Citrus Sinensis ID: 019876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEcEEEcccccHHHHHHcccEEEEcccccccccccccccccccEEEccccccHHHccccccccccccccccEEEEEccccHHHHHHHHHcccccccccccccHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHccccEEEEEcccccccccccHHHHHccHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccEEEccccccccEEEEEEEEEEEEccccccEEEEccccEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEccccccccHHHHccccccHHHHHHHHHHHHHHHcccEEEEEcccEcccEcHHHHHHHccEEEEcccccEEccccccccccccEEEHHHHHHHHcccHHHccccccccccEEEEEEcccHHHHHHHHHHHccHHHHccccccHHHHHHHHHccccEEEEEccccHHHccccHHHHHHHHcccccEEEEcHHHccccccHHHHHHcccHHHHHHHHHHHHHHHccccccccccEEEEEEEcccEEEEcccccccEEEEEEEEEEEEccccccEEEEEccccEEccc
Coil and Loop (DISEMBL)
MYKARAWLSRSFtalssnplrvcvvgsgpagfyTAEKTLKAHQEAQVDIidrlptpfglvrsgvapdhpetkIVINQFSRVVQHERcsffgnvtlgssvslseLRQLYHVVVLAYgaesdralgipgedligvhsAREFVWwynghpdgknlspdlkstdTAVILGQGNVALDVARIllrpteelattDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYvhireddliksptdeeemkNSRIQRRVYELLSKAAasassqpmlgqreLHFVffrkpdsflesnersghvsgvhfektalkgggpgkqyavgtgefedld
Flexible Loop (DISEMBL)
mykarawlsrsftalssnplrVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELReilgiknlyvhireddliksptdeeemknSRIQRRVYELLSKAAAsassqpmlgQRELHFVFFRKPDSFLESNERSGHVSGVHFektalkgggpgkqyavgtgefedld
Low Complexity Region (SEG)
MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLskaaasassQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD
Disordered region (IsUnstruct)
*****AWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG******LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL***************************************ELHFVFFRK********************************************
Disordered Region (DISOPRED)
*********************VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD********IQRRVYELLS****************LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE*EDL*
Disordered Region (DISEMBL)
********SRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSP*********RIQRRVYELLSK********PMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD
Disordered Region (DISPRO)
MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
P82861	498	NADPH:adrenodoxin oxidore	N/A	no	0.949	0.636	0.487	1e-79
Q61578	494	NADPH:adrenodoxin oxidore	yes	no	0.949	0.641	0.470	3e-72
P56522	494	NADPH:adrenodoxin oxidore	yes	no	0.946	0.639	0.465	1e-71
P08165	492	NADPH:adrenodoxin oxidore	yes	no	0.937	0.636	0.466	2e-71
P22570	491	NADPH:adrenodoxin oxidore	yes	no	0.943	0.641	0.486	5e-71
Q9V3T9	466	NADPH:adrenodoxin oxidore	yes	no	0.805	0.577	0.485	2e-69
O05783	456	NADPH-ferredoxin reductas	yes	no	0.916	0.671	0.421	4e-57
O59710	469	Probable NADPH:adrenodoxi	yes	no	0.667	0.475	0.468	2e-55
O32886	456	NADPH-ferredoxin reductas	yes	no	0.793	0.581	0.436	2e-54
Q54KG7	515	Probable NADPH:adrenodoxi	yes	no	0.958	0.621	0.375	5e-54

>sp|P82861|ADRO_SALFO NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Salvelinus fontinalis GN=fdxr PE=2 SV=1

 Score =  296 bits (759), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/330 (48%), Positives = 215/330 (65%), Gaps = 13/330 (3%)

Query: 11  SFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE 70
           S +  +S+P +VC+VG GPAGFYTA+  +K   + QVDI +RLP PFGLVR GVAPDHPE
Sbjct: 36  STSTPASSP-KVCIVGGGPAGFYTAQHLVKTRTDVQVDIYERLPVPFGLVRFGVAPDHPE 94

Query: 71  TKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDL 130
            K VIN F++  +H RCSF GNV +G  V++ EL++ YH VVL+YGAE +R +G+PGEDL
Sbjct: 95  VKNVINTFTQTARHARCSFHGNVRVGKDVTVEELQEAYHAVVLSYGAEGNRTMGVPGEDL 154

Query: 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDI 190
            GV+SA++FV WYNG P  + L PDL S +TAVILGQGNVALDVAR+LL P + L  TDI
Sbjct: 155 AGVYSAKDFVGWYNGLPRNRELRPDL-SCETAVILGQGNVALDVARMLLSPVDILKKTDI 213

Query: 191 ASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250
             +A  AL  SS+R+V +VGRRGP+Q ACT KELRE++ +      +   +        E
Sbjct: 214 TQHALDALAESSVRRVLIVGRRGPLQVACTIKELREMVNLPGTRPEMEASEF---EGIAE 270

Query: 251 EMKN-SRIQRRVYELLSKAAASASSQPML-----GQRELHFVFFRKPDSFLESNERSGHV 304
            +K+ +R ++R+ ELL KAA     +  L      +R   F F R+P   L S +     
Sbjct: 271 TLKSLARPRKRLTELLLKAAIETPGEEELEKRNKAERAWGFRFLRRPLEVLPSTDLI-RA 329

Query: 305 SGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
           +G+      L+G G G + AV TGE ED++
Sbjct: 330 AGIRLAVNRLEGDGEGVR-AVATGEVEDVE 358

Salvelinus fontinalis (taxid: 8038)
EC: 1EC: .EC: 1EC: 8EC: .EC: 1EC: .EC: 2

>sp|Q61578|ADRO_MOUSE NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Mus musculus GN=Fdxr PE=2 SV=1

 Score =  271 bits (694), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 157/334 (47%), Positives = 204/334 (61%), Gaps = 17/334 (5%)

Query: 8   LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD 67
             + F+     P ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPD
Sbjct: 30  FCQKFSTQEKTP-QICVVGSGPAGFYTAQHLLKHHTHAHVDIYEKQLVPFGLVRFGVAPD 88

Query: 68  HPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
           HPE K VIN F++  + +RC+F GNV +G  VS+ ELR+ YH VVL+YGAE  + LGIPG
Sbjct: 89  HPEVKNVINTFTQTARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLGIPG 148

Query: 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187
           E+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L  
Sbjct: 149 EELPGVVSARAFVGWYNGLPENQELAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEK 207

Query: 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247
           TDI   A  AL  S ++ V++VGRRGP+Q A T KELRE++ +      +   D +    
Sbjct: 208 TDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPSDFLGL-- 265

Query: 248 DEEEMKNSRIQRRVYELLSKAAASASSQP--------MLGQRELHFVFFRKPDSFLESNE 299
            ++ +K+  + R    L      +A+ +P         L  R     FFR P   L + +
Sbjct: 266 -QDRIKD--VPRPRRRLTELLLRTATEKPGVEEAARQALASRAWGLRFFRSPQQVLPTPD 322

Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
               V+G+    T+L+G G   + AV TG+ EDL
Sbjct: 323 -GQRVAGIRLAVTSLEGVGESTR-AVPTGDVEDL 354

Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|P56522|ADRO_RAT NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Fdxr PE=1 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/335 (46%), Positives = 208/335 (62%), Gaps = 19/335 (5%)

Query: 8   LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD 67
             + F+   + P ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPD
Sbjct: 30  FCKKFSTQETTP-QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPD 88

Query: 68  HPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
           HPE K VIN F++  + +RC+F GNV +G  VS+ ELR+ YH VVL+YGAE  + L IPG
Sbjct: 89  HPEVKNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPG 148

Query: 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187
           E+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L  
Sbjct: 149 EELPGVVSARAFVGWYNGLPENQKLAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEK 207

Query: 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247
           TDI   A   L  S ++ V++VGRRGP+Q A T KELRE++ +      +   D +    
Sbjct: 208 TDITEVALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGL-- 265

Query: 248 DEEEMKN-SRIQRRVYELLSKAAASASSQPMLGQRELH--------FVFFRKPDSFLESN 298
            ++ +K+  R ++R+ ELL +   +A+ +P + +              FFR P   L + 
Sbjct: 266 -QDRIKDVPRPRKRLTELLLR---TATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTP 321

Query: 299 ERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
           +    V+G+    T L+G G   + AV TG+ EDL
Sbjct: 322 D-GRRVAGIRLAVTRLEGVGESTR-AVPTGDVEDL 354

Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|P08165|ADRO_BOVIN NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Bos taurus GN=FDXR PE=1 SV=3

 Score =  269 bits (688), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 154/330 (46%), Positives = 205/330 (62%), Gaps = 17/330 (5%)

Query: 12  FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
           F+     P ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPDHPE 
Sbjct: 32  FSTQEQTP-QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEV 90

Query: 72  KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
           K VIN F++  + +RC+F+GNV +G  V++ EL+  YH VVL+YGAE  +AL IPGE+L 
Sbjct: 91  KNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELP 150

Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
           GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L  TDI 
Sbjct: 151 GVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDIT 209

Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
             A  AL  S ++ V++VGRRGP+Q A T KELRE++ +      +   D +     +  
Sbjct: 210 EAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--LQDRI 267

Query: 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELH--------FVFFRKPDSFLESNERSGH 303
            + +R ++R+ ELL +   +A+ +P + +              FFR P   L S +    
Sbjct: 268 KEAARPRKRLMELLLR---TATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD-GRR 323

Query: 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
            +G+    T L+G G   + AV TG+ EDL
Sbjct: 324 AAGIRLAVTRLEGIGEATR-AVPTGDVEDL 352

Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|P22570|ADRO_HUMAN NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Homo sapiens GN=FDXR PE=1 SV=3

 Score =  268 bits (684), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 200/327 (61%), Gaps = 12/327 (3%)

Query: 12  FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
           F+     P ++CVVGSGPAGFYTA+  LK H +A VDI ++ P PFGLVR GVAPDHPE 
Sbjct: 32  FSTQEKTP-QICVVGSGPAGFYTAQHLLK-HPQAHVDIYEKQPVPFGLVRFGVAPDHPEV 89

Query: 72  KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
           K VIN F++     RC+F+GNV +G  V++ ELR+ YH VVL+YGAE  RAL IPGE+L 
Sbjct: 90  KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 149

Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
           GV SAR FV WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L  TDI 
Sbjct: 150 GVCSARAFVGWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDIT 208

Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
             A   L  S ++ V+LVGRRGP+Q A T KELRE++ +      +   D +      +E
Sbjct: 209 KAALGVLRQSRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKE 268

Query: 252 MKNSRIQRRVYELL-----SKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306
           +   R  +R+ ELL      K   + +++     R     FFR P   L S +     +G
Sbjct: 269 VPRPR--KRLTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPD-GRRAAG 325

Query: 307 VHFEKTALKGGGPGKQYAVGTGEFEDL 333
           V    T L+G     + AV TG+ EDL
Sbjct: 326 VRLAVTRLEGVDEATR-AVPTGDMEDL 351

Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9V3T9|ADRO_DROME NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Drosophila melanogaster GN=dare PE=2 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/274 (48%), Positives = 178/274 (64%), Gaps = 5/274 (1%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           R+C+VG+GPAGFY A+  LK      VD++++LP PFGLVR GVAPDHPE K VIN F++
Sbjct: 31  RICIVGAGPAGFYAAQLILKQLDNCVVDVVEKLPVPFGLVRFGVAPDHPEVKNVINTFTK 90

Query: 81  VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
             +H R  +FGN++LG+ VSL ELR  YH V+L YGA+ DR L +  E L  V SAR+FV
Sbjct: 91  TAEHPRLRYFGNISLGTDVSLRELRDRYHAVLLTYGADQDRQLELENEQLDNVISARKFV 150

Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
            WYNG P  +NL+PDL   D  ++ GQGNVA+DVAR+LL P + L TTD   YA  AL  
Sbjct: 151 AWYNGLPGAENLAPDLSGRDVTIV-GQGNVAVDVARMLLSPLDALKTTDTTEYALEALSC 209

Query: 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260
           S + +V+LVGRRGP+QAA T KELRE+L + N+    R +D   S  D +  K  R ++R
Sbjct: 210 SQVERVHLVGRRGPLQAAFTIKELREMLKLPNVDTRWRTEDF--SGIDMQLDKLQRPRKR 267

Query: 261 VYELLSKAAASASSQPMLGQRELHFVFFRKPDSF 294
           + EL+ K+        + G ++   +F R P + 
Sbjct: 268 LTELMLKSLKEQGR--ISGSKQFLPIFLRAPKAI 299

Required for synthesis of steroid hormones, for olfactory sensory behavior and completion of the second larval molt (a steroid mediated developmental transition) and pupariation.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|O05783|FPRA_MYCTU NADPH-ferredoxin reductase FprA OS=Mycobacterium tuberculosis GN=fprA PE=1 SV=1

 Score =  222 bits (565), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/320 (42%), Positives = 184/320 (57%), Gaps = 14/320 (4%)

Query: 19  PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKI 73
           P  + +VGSGP+ F+ A   LKA    +     VD+++ LPTP+GLVRSGVAPDHP+ K 
Sbjct: 3   PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 62

Query: 74  VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
           +  QF +  +  R  FFGNV +G  V   EL + Y  V+ A GA+SDR L IPGEDL G 
Sbjct: 63  ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122

Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
            +A +FV WYN HP  + +SPDL S   AV++G GNVALDVARILL   + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181

Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
           A  +L    I++V +VGRRGP+QAA T  ELRE+  +  + V I   +L    TDE+   
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL-DGITDEDAAA 240

Query: 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
             ++ ++  ++L      A  +P  G R + F F   P   +E   +   V  +   +  
Sbjct: 241 VGKVCKQNIKVLR---GYADREPRPGHRRMVFRFLTSP---IEIKGKR-KVERIVLGRNE 293

Query: 314 LKGGGPGKQYAVGTGEFEDL 333
           L   G G+  A  TGE E+L
Sbjct: 294 LVSDGSGRVAAKDTGEREEL 313

May serve as electron transfer protein and supply electrons to P450 systems.

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|O59710|ADRO_SCHPO Probable NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arh1 PE=3 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/224 (46%), Positives = 151/224 (67%), Gaps = 1/224 (0%)

Query: 7   WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP 66
           ++ R+++  +S+P+ V ++GSGPA FYTA + L+     ++D+ +  P PFGLVR GVAP
Sbjct: 5   FIKRTYSTQTSSPV-VGIIGSGPAAFYTAHRLLRNDPNVKIDMFESRPVPFGLVRYGVAP 63

Query: 67  DHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIP 126
           DHPE K V ++FS + +  +  F GNV +G+ VSL +L + Y  +VLAYGA  D+ LGIP
Sbjct: 64  DHPEVKHVEHKFSEIAESTQFRFLGNVNVGTDVSLRDLTKNYDCLVLAYGAAGDKRLGIP 123

Query: 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELA 186
           GEDL GV+SARE V WYN  P  +NL  DL   + AV++G GNV+LDVARILL    +L+
Sbjct: 124 GEDLSGVYSAREVVGWYNSDPRNQNLELDLSQVEDAVVIGHGNVSLDVARILLSNPAQLS 183

Query: 187 TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGI 230
            TDI      +LE S+++++++VGRR     + T KELRE+  +
Sbjct: 184 PTDINPLFLKSLERSNLKRLHIVGRRNIFSVSFTIKELRELFAL 227

Serves as the first electron transfer protein in all the mitochondrial P450 systems.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|O32886|FPRA_MYCLE NADPH-ferredoxin reductase FprA OS=Mycobacterium leprae (strain TN) GN=fprA PE=3 SV=1

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/275 (43%), Positives = 162/275 (58%), Gaps = 10/275 (3%)

Query: 22  VCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKIVIN 76
           + +VGSGP+GF+ A   LKA   +      VD+++ LPTP+GLVRSGVAPDHP+ K +  
Sbjct: 9   IAIVGSGPSGFFAAASVLKAADASDEINVAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 68

Query: 77  QFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136
           QF +  +  R  FFGNV +G  +  +EL + Y  V+ A GA+SDRAL IPGEDL G  +A
Sbjct: 69  QFEKTAEDPRFRFFGNVIVGKHIEPAELAERYDAVIYAVGAQSDRALNIPGEDLPGSIAA 128

Query: 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT 196
            +FV WYN HP+    SPDL S   AV++G GNVALDV RIL+   + LA TDIA +A  
Sbjct: 129 VDFVGWYNAHPNFHERSPDL-SGSRAVVIGNGNVALDVTRILITDPDVLAFTDIADHALE 187

Query: 197 ALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256
           +L    I +V +VGRRGP+Q A T  ELRE+  I+ + V +    L +  +DE      +
Sbjct: 188 SLRPRGIEEVVIVGRRGPLQTAFTTLELRELADIEGVDVLVDPAQL-EGISDENAAAAGK 246

Query: 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291
             R+  ++L          P  G R + F F   P
Sbjct: 247 TTRQNIKVLRDYTVRT---PKPGHRRIVFRFLTSP 278

May serve as electron transfer protein and supply electrons to P450 systems.

Mycobacterium leprae (taxid: 1769)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|Q54KG7|ADRO_DICDI Probable NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Dictyostelium discoideum GN=fdxr PE=3 SV=1

 Score =  211 bits (538), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 191/336 (56%), Gaps = 16/336 (4%)

Query: 9   SRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH 68
           S S   ++  P  +C++GSGPAG YTA K  +    A + I+++LP PFGLVRSG++PDH
Sbjct: 31  SSSTNQVNKTPFNLCIIGSGPAGLYTAAKVHRQIPHANITILEKLPYPFGLVRSGISPDH 90

Query: 69  PETKIVINQFSRV-VQH-ERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIP 126
              K V N   +V ++H  +  F GNV +   +    ++  +H VVLA G E D+ LGIP
Sbjct: 91  QNEKKVKNTLEKVLLEHPHQIQFIGNVDIEKDIKFQYIKDNFHAVVLACGIEGDKKLGIP 150

Query: 127 GE-DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP-TEE 184
           GE  L  V+ AREF+ W NG+   ++   DL S +   I+GQGNVALDVAR+LL+  ++E
Sbjct: 151 GELTLKNVYFAREFIGWLNGNLKDQHKQFDL-SNENLAIVGQGNVALDVARLLLKKNSDE 209

Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244
           L  TDI S ++  +  S+++ ++++GRRGP++ + T KE+REIL ++N+   I  +D+  
Sbjct: 210 LKKTDITSTSFDKINKSNVKNIHIIGRRGPLEVSFTNKEIREILTLQNVNTFI--NDIST 267

Query: 245 SPTDEEEM-KNSRIQRRVYELLSKAAASASSQ-PMLGQRELHFVFFRKPDSFLESNERSG 302
               EE++ K  R ++R +EL  +       +    G   L F F R P   L+    S 
Sbjct: 268 LDVSEEDVSKLERAKKRTFELFKQHLKPFDQEIANNGNMNLIFHFLRSPVELLDKYGSSS 327

Query: 303 H------VSGVHFEKTALKGGGPGKQ-YAVGTGEFE 331
                  +S +  EK  L      +Q  A+G+GEFE
Sbjct: 328 GSGDGMVLSKIKLEKNKLIIDEKTQQKKAIGSGEFE 363

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
255573812	492	NADPH:adrenodoxin oxidoreductase, mitoch	0.997	0.676	0.819	1e-160
356513151	484	PREDICTED: NADPH:adrenodoxin oxidoreduct	0.988	0.681	0.801	1e-154
356553385	484	PREDICTED: NADPH:adrenodoxin oxidoreduct	0.988	0.681	0.795	1e-152
225445178	486	PREDICTED: NADPH:adrenodoxin oxidoreduct	0.991	0.681	0.819	1e-152
449432374	486	PREDICTED: NADPH:adrenodoxin oxidoreduct	1.0	0.687	0.763	1e-149
449487548	486	PREDICTED: NADPH:adrenodoxin oxidoreduct	1.0	0.687	0.763	1e-149
224065242	496	predicted protein [Populus trichocarpa]	0.949	0.639	0.839	1e-148
297802792	484	hypothetical protein ARALYDRAFT_913213 [	0.997	0.688	0.746	1e-141
22329089	483	ferredoxin--NADP+ reductase [Arabidopsis	0.997	0.689	0.745	1e-137
357520949	452	NADPH:adrenodoxin oxidoreductase [Medica	0.883	0.652	0.810	1e-135

>gi|255573812|ref|XP_002527825.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative [Ricinus communis] gi|223532749|gb|EEF34528.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative [Ricinus communis]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/333 (81%), Positives = 299/333 (89%)

Query: 2   YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
           YKA  WLSR F+ L+S+PLRVCVVGSGPAGFYTAEK LKAH+EA++DIIDRLPTPFGLVR
Sbjct: 10  YKAMKWLSRRFSNLTSHPLRVCVVGSGPAGFYTAEKMLKAHREAEIDIIDRLPTPFGLVR 69

Query: 62  SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
           SGVAPDHPETKIVINQFSR+VQ+ERCSFFGNVTLGSS+SL+ELR LYHVVVLAYGAESDR
Sbjct: 70  SGVAPDHPETKIVINQFSRLVQNERCSFFGNVTLGSSISLAELRDLYHVVVLAYGAESDR 129

Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
           ALGIPGEDL+G+HSAREFVWWYNGHPD KNL+PDLK TDTAVILGQGNVALD  RILLRP
Sbjct: 130 ALGIPGEDLLGIHSAREFVWWYNGHPDCKNLNPDLKGTDTAVILGQGNVALDATRILLRP 189

Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
           T ELA TDIA +A  ALE S IRKVYLVGRRGPVQAACTAKELRE+LGIK+L++HI+E D
Sbjct: 190 TAELARTDIACHALAALEQSCIRKVYLVGRRGPVQAACTAKELREVLGIKDLFIHIKEAD 249

Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERS 301
           L+KS  DEEE+K SRIQRR+Y+LLSKAAAS  S P  GQRELHFVFFRKPD FL+S  R 
Sbjct: 250 LLKSSDDEEELKGSRIQRRIYDLLSKAAASGPSHPSSGQRELHFVFFRKPDRFLDSEVRI 309

Query: 302 GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
           GHV+GVHFEKT LKG  PGKQ AVGTG+FEDLD
Sbjct: 310 GHVAGVHFEKTVLKGISPGKQVAVGTGKFEDLD 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513151|ref|XP_003525277.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Glycine max]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/333 (80%), Positives = 292/333 (87%), Gaps = 3/333 (0%)

Query: 1   MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
           +  AR WL RS   +SSNPLRVCVVGSGPAGFYTAEK LKAHQ+AQVDIIDRLPTPFGLV
Sbjct: 6   LLGARRWLCRS---ISSNPLRVCVVGSGPAGFYTAEKMLKAHQQAQVDIIDRLPTPFGLV 62

Query: 61  RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
           RSGVAPDHPETKIVINQFSRV  HERCSF GNVTLGSS+SLSELR+LYHVVVLAYGAESD
Sbjct: 63  RSGVAPDHPETKIVINQFSRVAHHERCSFLGNVTLGSSISLSELRELYHVVVLAYGAESD 122

Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           R+LGIPGE+L G+HSAREFVWWYNGHPDG+NL PDLKSTDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLGIPGENLKGIHSAREFVWWYNGHPDGRNLEPDLKSTDTAVILGQGNVALDVARILLR 182

Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
           PT ELATTDIAS+A   LE SSIR VYLVGRRGP QAACTAKELREILGI N+ + I+E 
Sbjct: 183 PTTELATTDIASHALATLEESSIRVVYLVGRRGPAQAACTAKELREILGIHNVDIFIQES 242

Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
           DL+ +P DEEE+K++RIQRRV+ELLSKAA S      L QRELHFVFFRKP+SF ES +R
Sbjct: 243 DLLLTPVDEEELKSNRIQRRVHELLSKAATSKPKHACLNQRELHFVFFRKPNSFQESKDR 302

Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
           +GHVSG+HFEKT L+G  PGKQ AVG GEFED+
Sbjct: 303 AGHVSGMHFEKTVLQGVSPGKQIAVGAGEFEDI 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553385|ref|XP_003545037.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Glycine max]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/333 (79%), Positives = 289/333 (86%), Gaps = 3/333 (0%)

Query: 1   MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
           +  AR WL RS   +SSNPLRVCVVGSGPAGFYTAEK LKAHQ+A VDIIDRL TPFGLV
Sbjct: 6   LLGARRWLCRS---ISSNPLRVCVVGSGPAGFYTAEKMLKAHQQAHVDIIDRLSTPFGLV 62

Query: 61  RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
           RSGVAPDHPETKIVINQFSRV  HERCSF GNVTLGSS+SLSELR LYHVVVLAYGAESD
Sbjct: 63  RSGVAPDHPETKIVINQFSRVAHHERCSFLGNVTLGSSISLSELRDLYHVVVLAYGAESD 122

Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           R+LGIPGE+L G+HSAREFVWWYNGHPDG+NL PDLKSTDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLGIPGENLKGIHSAREFVWWYNGHPDGRNLEPDLKSTDTAVILGQGNVALDVARILLR 182

Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
           PT ELATTDIAS+A   LE SSIR VYLVGRRGP QAACTAKELREILGI N+ + I+E 
Sbjct: 183 PTTELATTDIASHALATLEESSIRVVYLVGRRGPAQAACTAKELREILGIHNVDIFIQES 242

Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
           DL+ +P DEEE+K++RIQRRV+ELLSKAA S      L QRELHFVFFRKP+SF ES +R
Sbjct: 243 DLLLTPVDEEELKSNRIQRRVHELLSKAATSKPKHACLNQRELHFVFFRKPNSFQESKDR 302

Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
           +GHVSG+HFEKT L+G  PGKQ AVG GEFED+
Sbjct: 303 AGHVSGMHFEKTVLQGVSPGKQIAVGAGEFEDI 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445178|ref|XP_002280736.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Vitis vinifera] gi|297738792|emb|CBI28037.3| unnamed protein product [Vitis vinifera]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/333 (81%), Positives = 298/333 (89%), Gaps = 2/333 (0%)

Query: 3   KARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62
           +A+ W SRSF++LSSNPLRVCVVGSGPAGFYTAEK LKAHQ A++DI+DRLPTPFGLVRS
Sbjct: 5   RAKTWFSRSFSSLSSNPLRVCVVGSGPAGFYTAEKMLKAHQGAEIDIVDRLPTPFGLVRS 64

Query: 63  GVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRA 122
           GVAPDHPETKIV+NQFSRV Q++RCSF GNVTLGSS+SLSELR+LYHVVVLAYGAESDR 
Sbjct: 65  GVAPDHPETKIVVNQFSRVAQNDRCSFIGNVTLGSSISLSELRELYHVVVLAYGAESDRV 124

Query: 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPT 182
           LGIPGED  G+HSAREFVWWYNGHPD KNL PDLKSTDTAVILGQGNVALDVARILLRPT
Sbjct: 125 LGIPGEDFAGIHSAREFVWWYNGHPDCKNLDPDLKSTDTAVILGQGNVALDVARILLRPT 184

Query: 183 EELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242
            ELA TDIAS+A  ALE SSIRKVYLVGRRGPVQAACTAKELREILGIK+L VHI+E DL
Sbjct: 185 MELAKTDIASHALAALEESSIRKVYLVGRRGPVQAACTAKELREILGIKDLNVHIQESDL 244

Query: 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG 302
           +KSP DEEE+KN+RIQRRVYELLSK AAS  S    GQRELHFVFFRKPD FL+S +R+G
Sbjct: 245 LKSPADEEELKNNRIQRRVYELLSK-AASGPSLTSSGQRELHFVFFRKPDRFLDSGDRNG 303

Query: 303 HVSGVHFEKTALKGG-GPGKQYAVGTGEFEDLD 334
           HV+GVH EKT LK   G GKQ AVGTG+FEDL+
Sbjct: 304 HVAGVHCEKTILKESVGSGKQIAVGTGQFEDLE 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432374|ref|XP_004133974.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Cucumis sativus]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/334 (76%), Positives = 288/334 (86%)

Query: 1   MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
           + +ARA   RSF+  +S+P  +CVVGSGPAGFYTAEK LKA   AQVDIIDRLPTPFGLV
Sbjct: 3   LSRARALFCRSFSTFASHPTHICVVGSGPAGFYTAEKLLKALPNAQVDIIDRLPTPFGLV 62

Query: 61  RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
           RSGVAPDHPETKIV+NQF+RV QH+RCSFFGN+ LGSS+SL +LR+LYH VVLAYGAESD
Sbjct: 63  RSGVAPDHPETKIVVNQFTRVAQHQRCSFFGNIKLGSSISLLDLRELYHTVVLAYGAESD 122

Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           R+L IPGEDL G+ SAREFVWWYNGHPD +NL+P LK+TDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLKIPGEDLCGIQSAREFVWWYNGHPDCRNLNPGLKATDTAVILGQGNVALDVARILLR 182

Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
           PT ELA+TDIAS+A  AL+ SSIRKV LVGRRGPVQAACTAKELRE+LGIKNL++HI+E 
Sbjct: 183 PTSELASTDIASHALEALQESSIRKVLLVGRRGPVQAACTAKELREVLGIKNLHIHIQEA 242

Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
           DL+KSPTDEEE+KNSRIQRRVYELL+KAAAS       G RELHFVFFRKP+ FL S ++
Sbjct: 243 DLLKSPTDEEEVKNSRIQRRVYELLAKAAASGPPHSGTGLRELHFVFFRKPEEFLSSVDK 302

Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
             HV+GV FEKT L+G  PGKQ A GTGEFEDLD
Sbjct: 303 KDHVAGVRFEKTVLEGSSPGKQIARGTGEFEDLD 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487548|ref|XP_004157681.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Cucumis sativus]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/334 (76%), Positives = 288/334 (86%)

Query: 1   MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
           + +ARA   RSF+  +S+P  +CVVGSGPAGFYTAEK LKA   AQVDIIDRLPTPFGLV
Sbjct: 3   LSRARALFCRSFSTFASHPTHICVVGSGPAGFYTAEKLLKALPNAQVDIIDRLPTPFGLV 62

Query: 61  RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
           RSGVAPDHPETKIV+NQF+RV QH+RCSFFGN+ LGSS+SL +LR+LYH VVLAYGAESD
Sbjct: 63  RSGVAPDHPETKIVVNQFTRVAQHQRCSFFGNIKLGSSISLLDLRELYHTVVLAYGAESD 122

Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           R+L IPGEDL G+ SAREFVWWYNGHPD +NL+P LK+TDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLKIPGEDLCGIQSAREFVWWYNGHPDCRNLNPGLKATDTAVILGQGNVALDVARILLR 182

Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
           PT ELA+TDIAS+A  AL+ SSIRKV LVGRRGPVQAACTAKELRE+LGIKNL++HI+E 
Sbjct: 183 PTSELASTDIASHALEALQESSIRKVLLVGRRGPVQAACTAKELREVLGIKNLHIHIQEA 242

Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
           DL+KSPTDEEE+KNSRIQRRVYELL+KAAAS       G RELHFVFFRKP+ FL S ++
Sbjct: 243 DLLKSPTDEEEVKNSRIQRRVYELLAKAAASGPPHSGTGLRELHFVFFRKPEEFLSSVDK 302

Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
             HV+GV FEKT L+G  PGKQ A GTGEFEDLD
Sbjct: 303 KDHVAGVRFEKTVLEGSSPGKQIARGTGEFEDLD 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065242|ref|XP_002301734.1| predicted protein [Populus trichocarpa] gi|222843460|gb|EEE81007.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/317 (83%), Positives = 284/317 (89%)

Query: 18  NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQ 77
           NPLRVCVVG+GPAGFYTAEK LKAHQ A+VDIIDRLPTPFGLVRSGVAPDHP+TKIV+NQ
Sbjct: 30  NPLRVCVVGTGPAGFYTAEKMLKAHQGAEVDIIDRLPTPFGLVRSGVAPDHPDTKIVMNQ 89

Query: 78  FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
           FS+V QHERCSFFGNVTLGSSVSLSELR+LYHVVVLAYGAESDRALGIPGE L G+HSAR
Sbjct: 90  FSKVAQHERCSFFGNVTLGSSVSLSELRELYHVVVLAYGAESDRALGIPGEYLSGIHSAR 149

Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197
           EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILL+ T  LATTDIAS+A  A
Sbjct: 150 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLQSTSVLATTDIASHALEA 209

Query: 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI 257
           LE SSIRKVYLVGRRGP QAACTAKELRE+LGIK+L +HI E DL KSP DEE +KN+RI
Sbjct: 210 LEQSSIRKVYLVGRRGPAQAACTAKELREVLGIKDLCIHINEVDLRKSPEDEEVLKNNRI 269

Query: 258 QRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317
            RRVYELLSKAAASA S P   QRELHFVFFRKPD FL+S E SG V+GVHFEKT LK  
Sbjct: 270 HRRVYELLSKAAASAPSHPSSSQRELHFVFFRKPDRFLDSGEGSGRVAGVHFEKTMLKAV 329

Query: 318 GPGKQYAVGTGEFEDLD 334
           GPG+Q AVGTG +EDLD
Sbjct: 330 GPGRQIAVGTGSYEDLD 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802792|ref|XP_002869280.1| hypothetical protein ARALYDRAFT_913213 [Arabidopsis lyrata subsp. lyrata] gi|297315116|gb|EFH45539.1| hypothetical protein ARALYDRAFT_913213 [Arabidopsis lyrata subsp. lyrata]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/335 (74%), Positives = 284/335 (84%), Gaps = 2/335 (0%)

Query: 2   YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
           Y AR  +SR  +++SS PL VC+VGSGPAG YTA+K LKAH+ A VDIIDRLPTPFGLVR
Sbjct: 4   YLARYMVSRYLSSVSSRPLHVCIVGSGPAGLYTADKVLKAHEGAHVDIIDRLPTPFGLVR 63

Query: 62  SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
           SGVAPDHPETKI INQFSRV +HERCSF+GNV LGS + LSELR LYHVVVLAYGAESD+
Sbjct: 64  SGVAPDHPETKIAINQFSRVAKHERCSFYGNVKLGSDLLLSELRDLYHVVVLAYGAESDK 123

Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
            LGIPGE L G++SAREFVWWYNGHPD  +L PDLKS+DTAVILGQGNVALDVARILLRP
Sbjct: 124 DLGIPGESLSGIYSAREFVWWYNGHPDYSSLKPDLKSSDTAVILGQGNVALDVARILLRP 183

Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
           T ELA+TDIA +A + LE SSIRKVYL+GRRGPVQAA TAKELRE+LGIKNL + I+E D
Sbjct: 184 TTELASTDIARHALSVLEESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLRIRIKETD 243

Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSK--AAASASSQPMLGQRELHFVFFRKPDSFLESNE 299
           L  +P DEEEMKNSR ++R+YELLSK  AAA+ +S+    QRELHFVFFR+PD FLES+E
Sbjct: 244 LSLTPADEEEMKNSRARKRIYELLSKAAAAAAGTSEADPDQRELHFVFFRQPDRFLESDE 303

Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
           R GHVSGV+ EKT L+  G GKQ AVGTGEFEDL+
Sbjct: 304 RKGHVSGVNLEKTILESVGSGKQIAVGTGEFEDLN 338

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329089|ref|NP_194962.2| ferredoxin--NADP+ reductase [Arabidopsis thaliana] gi|17481351|dbj|BAB79228.1| MFDR [Arabidopsis thaliana] gi|28192433|gb|AAL82814.1| NADP adrenodoxin-like ferredoxin reductase [Arabidopsis thaliana] gi|332660646|gb|AEE86046.1| ferredoxin--NADP+ reductase [Arabidopsis thaliana]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/334 (74%), Positives = 286/334 (85%), Gaps = 1/334 (0%)

Query: 2   YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
           Y AR  +SR F++ SS PL VC+VGSGPAGFYTA+K LKAH+ A VDIIDRLPTPFGLVR
Sbjct: 4   YLARYMVSRYFSSASSRPLHVCIVGSGPAGFYTADKVLKAHEGAHVDIIDRLPTPFGLVR 63

Query: 62  SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
           SGVAPDHPETKI INQFSRV QHERCSF GNV LGS +SLSELR LYHVVVLAYGAESD+
Sbjct: 64  SGVAPDHPETKIAINQFSRVAQHERCSFIGNVKLGSDLSLSELRDLYHVVVLAYGAESDK 123

Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
            LGIPGE L G++SAREFVWWYNGHPD  +L PDLK++D+AVILGQGNVALDVARILLRP
Sbjct: 124 DLGIPGESLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILLRP 183

Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
           T ELA+TDIA++A +AL+ SSIRKVYL+GRRGPVQAA TAKELRE+LGIKNL++ I++ D
Sbjct: 184 TTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTD 243

Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM-LGQRELHFVFFRKPDSFLESNER 300
           L  +P DEEEMK SR ++R+YELLSKAAA+A +      QRELHFVFFR+PD FLES+ER
Sbjct: 244 LSVTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDER 303

Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
            GHVSGV+ +KT L+  G GKQ AVGTGEFEDL+
Sbjct: 304 KGHVSGVNLQKTILESVGTGKQIAVGTGEFEDLN 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520949|ref|XP_003630763.1| NADPH:adrenodoxin oxidoreductase [Medicago truncatula] gi|355524785|gb|AET05239.1| NADPH:adrenodoxin oxidoreductase [Medicago truncatula]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/295 (81%), Positives = 261/295 (88%)

Query: 39  LKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98
           LKA Q+AQVDIIDRLPTPFGLVRSGVAPDHPETKIV+NQFSRV QHERCSFFGNVTLGS+
Sbjct: 2   LKASQQAQVDIIDRLPTPFGLVRSGVAPDHPETKIVVNQFSRVAQHERCSFFGNVTLGSN 61

Query: 99  VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKS 158
           VSL+ELR+LYHVVVLAYGAESDR+LGIPGE+L G+ SAREFVWWYNGHPDG+NL PDLKS
Sbjct: 62  VSLAELRKLYHVVVLAYGAESDRSLGIPGENLKGILSAREFVWWYNGHPDGRNLDPDLKS 121

Query: 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA 218
            DTAVILGQGNVALDVARILLRPT ELATTDIAS+A + LE SSIR VYLVGRRGP QAA
Sbjct: 122 IDTAVILGQGNVALDVARILLRPTTELATTDIASHALSTLEESSIRVVYLVGRRGPAQAA 181

Query: 219 CTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPML 278
           CTAKELRE+LGIKNL V I+E DL  +PTDEEE+K++RI RR++ELLSKAA S      L
Sbjct: 182 CTAKELREVLGIKNLDVSIQESDLHLTPTDEEELKSNRIHRRIFELLSKAATSRPIHAGL 241

Query: 279 GQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
            QR+L FVFFRKPDSF ES + +GHVSGV FEKT LKG GPGKQ AVGTGEFEDL
Sbjct: 242 NQRQLRFVFFRKPDSFQESKDSTGHVSGVLFEKTVLKGVGPGKQIAVGTGEFEDL 296

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2127811	483	AT4G32360 [Arabidopsis thalian	0.997	0.689	0.727	7.6e-128
UNIPROTKB|F1NRB1	466	FDXR "NADPH:adrenodoxin oxidor	0.955	0.684	0.473	2.1e-70
MGI|MGI:104724	494	Fdxr "ferredoxin reductase" [M	0.949	0.641	0.481	1.1e-69
RGD|621648	494	Fdxr "ferredoxin reductase" [R	0.949	0.641	0.472	3.5e-68
UNIPROTKB|P56522	494	Fdxr "NADPH:adrenodoxin oxidor	0.949	0.641	0.472	3.5e-68
UNIPROTKB|P08165	492	FDXR "NADPH:adrenodoxin oxidor	0.943	0.640	0.469	9.2e-68
UNIPROTKB|P22570	491	FDXR "NADPH:adrenodoxin oxidor	0.943	0.641	0.483	1.5e-67
UNIPROTKB|F1RV70	492	FDXR "NADPH:adrenodoxin oxidor	0.952	0.646	0.471	1.9e-67
UNIPROTKB|E7EQC1	522	FDXR "NADPH:adrenodoxin oxidor	0.919	0.588	0.490	3.1e-67
UNIPROTKB|J3QQX3	463	FDXR "NADPH:adrenodoxin oxidor	0.625	0.451	0.606	1.4e-66

TAIR|locus:2127811 AT4G32360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
 Identities = 243/334 (72%), Positives = 279/334 (83%)

Query:     2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
             Y AR  +SR F++ SS PL VC+VGSGPAGFYTA+K LKAH+ A VDIIDRLPTPFGLVR
Sbjct:     4 YLARYMVSRYFSSASSRPLHVCIVGSGPAGFYTADKVLKAHEGAHVDIIDRLPTPFGLVR 63

Query:    62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
             SGVAPDHPETKI INQFSRV QHERCSF GNV LGS +SLSELR LYHVVVLAYGAESD+
Sbjct:    64 SGVAPDHPETKIAINQFSRVAQHERCSFIGNVKLGSDLSLSELRDLYHVVVLAYGAESDK 123

Query:   122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
              LGIPGE L G++SAREFVWWYNGHPD  +L PDLK++D+AVILGQGNVALDVARILLRP
Sbjct:   124 DLGIPGESLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILLRP 183

Query:   182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
             T ELA+TDIA++A +AL+ SSIRKVYL+GRRGPVQAA TAKELRE+LGIKNL++ I++ D
Sbjct:   184 TTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTD 243

Query:   242 LIKSPTDEEEMKNSRIQRRVYELLXXXXXXX-XXQPMLGQRELHFVFFRKPDSFLESNER 300
             L  +P DEEEMK SR ++R+YELL          +    QRELHFVFFR+PD FLES+ER
Sbjct:   244 LSVTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDER 303

Query:   301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
              GHVSGV+ +KT L+  G GKQ AVGTGEFEDL+
Sbjct:   304 KGHVSGVNLQKTILESVGTGKQIAVGTGEFEDLN 337

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|F1NRB1 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 159/336 (47%), Positives = 212/336 (63%)

Query:     5 RAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV 64
             R WLS    A    P R+CVVGSGPAGFYTA+  LK H  AQVDI ++LP PFGLVR GV
Sbjct:     2 RRWLSSRAPA----P-RICVVGSGPAGFYTAQHILKHHDLAQVDIYEKLPVPFGLVRFGV 56

Query:    65 APDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALG 124
             APDHPE K VIN F+   + +RC+++GNVT+G  V++ EL+Q YH VVL+YGAE +R LG
Sbjct:    57 APDHPEVKNVINTFTHTARSDRCAYYGNVTVGRDVTVGELQQAYHAVVLSYGAEDNRVLG 116

Query:   125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEE 184
             IPGE+L GV+SAR FV WYNG P+ ++L PDL S +TA+ILG GNVALD+ARILL P + 
Sbjct:   117 IPGENLSGVYSARAFVGWYNGLPENRDLKPDL-SCETALILGHGNVALDIARILLSPLDF 175

Query:   185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244
             L  TDI   +  AL  S +++V+L GRRGP+Q A T KELRE++ +      +   D   
Sbjct:   176 LRKTDITDCSLAALACSKVKRVWLAGRRGPLQVAFTIKELREMINLPGTQPVLNPADFTG 235

Query:   245 SPTDEEEMKNS-RIQRRVYELLXXXXXXXXXQP-MLGQ----RELHFVFFRKPDSFLESN 298
                 E  +K++ R ++R+ EL+         +  ++ Q    R+    F R P   L + 
Sbjct:   236 L---ENAVKDAPRPRKRLTELMIKTALEKHREKAVMAQAAVPRQWGLKFQRSPQEVLPTA 292

Query:   299 ERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
             +    V GV    T L+G G   + AV TG+ E+L+
Sbjct:   293 DGM-RVRGVRMALTRLEGSGDSAK-AVPTGDMEELE 326

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

MGI|MGI:104724 Fdxr "ferredoxin reductase" [Mus musculus (taxid:10090)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 159/330 (48%), Positives = 205/330 (62%)

Query:    10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
             + F+     P ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPDHP
Sbjct:    32 QKFSTQEKTP-QICVVGSGPAGFYTAQHLLKHHTHAHVDIYEKQLVPFGLVRFGVAPDHP 90

Query:    70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
             E K VIN F++  + +RC+F GNV +G  VS+ ELR+ YH VVL+YGAE  + LGIPGE+
Sbjct:    91 EVKNVINTFTQTARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLGIPGEE 150

Query:   130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
             L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L  TD
Sbjct:   151 LPGVVSARAFVGWYNGLPENQELAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 209

Query:   190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
             I   A  AL  S ++ V++VGRRGP+Q A T KELRE++ +      +   D +     +
Sbjct:   210 ITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPSDFLGL---Q 266

Query:   250 EEMKN-SRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGH 303
             + +K+  R +RR+ ELL              +  L  R     FFR P   L + +    
Sbjct:   267 DRIKDVPRPRRRLTELLLRTATEKPGVEEAARQALASRAWGLRFFRSPQQVLPTPDGQ-R 325

Query:   304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
             V+G+    T+L+G G   + AV TG+ EDL
Sbjct:   326 VAGIRLAVTSLEGVGESTR-AVPTGDVEDL 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0015039 "NADPH-adrenodoxin reductase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=ISO

GO:0070995 "NADPH oxidation" evidence=ISO

RGD|621648 Fdxr "ferredoxin reductase" [Rattus norvegicus (taxid:10116)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 156/330 (47%), Positives = 203/330 (61%)

Query:    10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
             + F+   + P ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPDHP
Sbjct:    32 KKFSTQETTP-QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHP 90

Query:    70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
             E K VIN F++  + +RC+F GNV +G  VS+ ELR+ YH VVL+YGAE  + L IPGE+
Sbjct:    91 EVKNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEE 150

Query:   130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
             L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L  TD
Sbjct:   151 LPGVVSARAFVGWYNGLPENQKLAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 209

Query:   190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
             I   A   L  S ++ V++VGRRGP+Q A T KELRE++ +      +   D +     +
Sbjct:   210 ITEVALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGL---Q 266

Query:   250 EEMKN-SRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGH 303
             + +K+  R ++R+ ELL              +  L  R     FFR P   L + +    
Sbjct:   267 DRIKDVPRPRKRLTELLLRTATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTPD-GRR 325

Query:   304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
             V+G+    T L+G G   + AV TG+ EDL
Sbjct:   326 VAGIRLAVTRLEGVGESTR-AVPTGDVEDL 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0015039 "NADPH-adrenodoxin reductase activity" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070402 "NADPH binding" evidence=IDA

GO:0070995 "NADPH oxidation" evidence=IDA

UNIPROTKB|P56522 Fdxr "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 156/330 (47%), Positives = 203/330 (61%)

Query:    10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
             + F+   + P ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPDHP
Sbjct:    32 KKFSTQETTP-QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHP 90

Query:    70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
             E K VIN F++  + +RC+F GNV +G  VS+ ELR+ YH VVL+YGAE  + L IPGE+
Sbjct:    91 EVKNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEE 150

Query:   130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
             L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L  TD
Sbjct:   151 LPGVVSARAFVGWYNGLPENQKLAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 209

Query:   190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
             I   A   L  S ++ V++VGRRGP+Q A T KELRE++ +      +   D +     +
Sbjct:   210 ITEVALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGL---Q 266

Query:   250 EEMKN-SRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGH 303
             + +K+  R ++R+ ELL              +  L  R     FFR P   L + +    
Sbjct:   267 DRIKDVPRPRKRLTELLLRTATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTPD-GRR 325

Query:   304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
             V+G+    T L+G G   + AV TG+ EDL
Sbjct:   326 VAGIRLAVTRLEGVGESTR-AVPTGDVEDL 354

GO:0005759 "mitochondrial matrix" evidence=IEA

UNIPROTKB|P08165 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 154/328 (46%), Positives = 201/328 (61%)

Query:    12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
             F+     P ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPDHPE 
Sbjct:    32 FSTQEQTP-QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEV 90

Query:    72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
             K VIN F++  + +RC+F+GNV +G  V++ EL+  YH VVL+YGAE  +AL IPGE+L 
Sbjct:    91 KNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELP 150

Query:   132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
             GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L  TDI 
Sbjct:   151 GVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDIT 209

Query:   192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
               A  AL  S ++ V++VGRRGP+Q A T KELRE++ +      +   D +     ++ 
Sbjct:   210 EAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGL---QDR 266

Query:   252 MKNS-RIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGHVS 305
             +K + R ++R+ ELL              +     R     FFR P   L S +     +
Sbjct:   267 IKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD-GRRAA 325

Query:   306 GVHFEKTALKGGGPGKQYAVGTGEFEDL 333
             G+    T L+G G   + AV TG+ EDL
Sbjct:   326 GIRLAVTRLEGIGEATR-AVPTGDVEDL 352

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=TAS

GO:0006694 "steroid biosynthetic process" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0050661 "NADP binding" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=TAS

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|P22570 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 158/327 (48%), Positives = 196/327 (59%)

Query:    12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
             F+     P ++CVVGSGPAGFYTA+  LK H +A VDI ++ P PFGLVR GVAPDHPE 
Sbjct:    32 FSTQEKTP-QICVVGSGPAGFYTAQHLLK-HPQAHVDIYEKQPVPFGLVRFGVAPDHPEV 89

Query:    72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
             K VIN F++     RC+F+GNV +G  V++ ELR+ YH VVL+YGAE  RAL IPGE+L 
Sbjct:    90 KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 149

Query:   132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
             GV SAR FV WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L  TDI 
Sbjct:   150 GVCSARAFVGWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDIT 208

Query:   192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
               A   L  S ++ V+LVGRRGP+Q A T KELRE++ +      +   D +      +E
Sbjct:   209 KAALGVLRQSRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKE 268

Query:   252 MKNSRIQRRVYELLXXXXX-----XXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306
             +   R  +R+ ELL              +     R     FFR P   L S +     +G
Sbjct:   269 VPRPR--KRLTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPD-GRRAAG 325

Query:   307 VHFEKTALKGGGPGKQYAVGTGEFEDL 333
             V    T L+G     + AV TG+ EDL
Sbjct:   326 VRLAVTRLEGVDEATR-AVPTGDMEDL 351

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0015039 "NADPH-adrenodoxin reductase activity" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0070995 "NADPH oxidation" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=TAS

GO:0006091 "generation of precursor metabolites and energy" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0006694 "steroid biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1RV70 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 155/329 (47%), Positives = 199/329 (60%)

Query:    10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
             + F+     P ++CVVGSGPAGFYTA+  LK H  A+VDI ++   PFGLVR GVAPDHP
Sbjct:    30 QQFSTQEQTP-QICVVGSGPAGFYTAQHLLKHHSRARVDIYEKQLVPFGLVRFGVAPDHP 88

Query:    70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
             E K VIN F++  + +RC+F GNV +G  V++ EL++ YH VVL+YGAE  RAL IPGE+
Sbjct:    89 EVKNVINTFTQTARSDRCAFHGNVVVGRDVTVPELQEAYHAVVLSYGAEDHRALEIPGEE 148

Query:   130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
             L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L  TD
Sbjct:   149 LPGVFSARAFVGWYNGLPENQELAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 207

Query:   190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
             I   A  AL  S ++ V++VGRRGP+Q A T KELRE++ +      +   D +      
Sbjct:   208 ITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPADFLGLQDRI 267

Query:   250 EEMKNSRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGHV 304
             +E+   R  +R+ ELL              +     R     F R P   L S +     
Sbjct:   268 KEVPRPR--KRLMELLLRTATEKPGAEEAARRASASRAWGLRFSRSPQQVLPSAD-GRRA 324

Query:   305 SGVHFEKTALKGGGPGKQYAVGTGEFEDL 333
             +G+    T L+G G   + AV TG+ EDL
Sbjct:   325 AGIRLAVTRLEGVGEATR-AVPTGDVEDL 352

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E7EQC1 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 156/318 (49%), Positives = 193/318 (60%)

Query:    21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
             ++CVVGSGPAGFYTA+  LK H +A VDI ++ P PFGLVR GVAPDHPE K VIN F++
Sbjct:    71 QICVVGSGPAGFYTAQHLLK-HPQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQ 129

Query:    81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
                  RC+F+GNV +G  V++ ELR+ YH VVL+YGAE  RAL IPGE+L GV SAR FV
Sbjct:   130 TAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFV 189

Query:   141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
              WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L  TDI   A   L  
Sbjct:   190 GWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDITKAALGVLRQ 248

Query:   201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260
             S ++ V+LVGRRGP+Q A T KELRE++ +      +   D +      +E+   R  +R
Sbjct:   249 SRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEVPRPR--KR 306

Query:   261 VYELLXXXXX-----XXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315
             + ELL              +     R     FFR P   L S +     +GV    T L+
Sbjct:   307 LTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPD-GRRAAGVRLAVTRLE 365

Query:   316 GGGPGKQYAVGTGEFEDL 333
             G     + AV TG+ EDL
Sbjct:   366 GVDEATR-AVPTGDMEDL 382

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

UNIPROTKB|J3QQX3 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 633 (227.9 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 128/211 (60%), Positives = 151/211 (71%)

Query:    12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
             F+     P ++CVVGSGPAGFYTA+  LK H +A VDI ++ P PFGLVR GVAPDHPE 
Sbjct:    32 FSTQEKTP-QICVVGSGPAGFYTAQHLLKQHPQAHVDIYEKQPVPFGLVRFGVAPDHPEV 90

Query:    72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
             K VIN F++     RC+F+GNV +G  V++ ELR+ YH VVL+YGAE  RAL IPGE+L 
Sbjct:    91 KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 150

Query:   132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
             GV SAR FV WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L  TDI 
Sbjct:   151 GVCSARAFVGWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDIT 209

Query:   192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAK 222
               A   L  S ++ V+LVGRRGP+Q A T K
Sbjct:   210 KAALGVLRQSRVKTVWLVGRRGPLQVAFTIK 240

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.18.1.2	0.824
3rd Layer	1.18.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
PLN02852	491	PLN02852, PLN02852, ferredoxin-NADP+ reductase	0.0
PTZ00188	506	PTZ00188, PTZ00188, adrenodoxin reductase; Provisi	3e-48
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-24
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	3e-22
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-19
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	2e-16
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	5e-16
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	1e-15
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	1e-15
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	4e-15
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	1e-13
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	3e-13
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	5e-13
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	3e-12
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	1e-11
PRK12809	639	PRK12809, PRK12809, putative oxidoreductase Fe-S b	2e-11
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	6e-09
PRK12779	944	PRK12779, PRK12779, putative bifunctional glutamat	1e-08
PRK12775	1006	PRK12775, PRK12775, putative trifunctional 2-polyp	6e-08
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	1e-07
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	2e-07
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	6e-06

>gnl|CDD|215457 PLN02852, PLN02852, ferredoxin-NADP+ reductase

 Score =  607 bits (1566), Expect = 0.0
 Identities = 249/340 (73%), Positives = 278/340 (81%), Gaps = 6/340 (1%)

Query: 1   MYKARAWLSRSF-----TALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55
             +AR WLSR+      ++ +S PL VCVVGSGPAGFYTA+K LKAH  A+VDII+RLPT
Sbjct: 3   RLRARTWLSRALSFSNSSSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62

Query: 56  PFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAY 115
           PFGLVRSGVAPDHPETK V NQFSRV   +R SFFGNVTLG  VSLSELR LYHVVVLAY
Sbjct: 63  PFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDVSLSELRDLYHVVVLAY 122

Query: 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175
           GAESDR LGIPGEDL GV SAREFVWWYNGHPD  +L PDLKS+DTAV+LGQGNVALD A
Sbjct: 123 GAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCA 182

Query: 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235
           RILLRPT+ELA+TDIA +A  AL GSS+RKVYLVGRRGPVQAACTAKELRE+LG+KN+ V
Sbjct: 183 RILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRV 242

Query: 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295
            I+E DL  SP DEEE+K SR +RRVYELLSKAAA+    P  GQRELHFVFFR P  FL
Sbjct: 243 RIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFL 302

Query: 296 ESNERSGHVSGVHFEKTALKG-GGPGKQYAVGTGEFEDLD 334
           +S + +GHV+GV  E+T L+G  G GKQ AVGTGEFEDL 
Sbjct: 303 DSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLP 342

Length = 491

>gnl|CDD|240308 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional

 Score =  168 bits (428), Expect = 3e-48
 Identities = 96/285 (33%), Positives = 157/285 (55%), Gaps = 30/285 (10%)

Query: 7   WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP 66
           +  + F    + P +V ++G+GP+  Y  +  LK H+  +VDI ++LP P+GL+R GVAP
Sbjct: 27  FTGKCFFTNEAKPFKVGIIGAGPSALYCCKHLLK-HERVKVDIFEKLPNPYGLIRYGVAP 85

Query: 67  DHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGA-ESDRALGI 125
           DH   K     F  V       FFGNV +G  + + ELR  Y+ V+   GA E    +G 
Sbjct: 86  DHIHVKNTYKTFDPVFLSPNYRFFGNVHVGVDLKMEELRNHYNCVIFCCGASEVSIPIGQ 145

Query: 126 PGEDLI------------GVHSAREFVWWYNGHPDG---KNLSPDLKSTD---TAVILGQ 167
             ED              G+  AR+ +++YN   +    K +   L S +   T++I+G 
Sbjct: 146 QDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGN 205

Query: 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227
           GNV+LD+ARIL++  ++L+ TDI+S     ++  +I+ +Y+VGRRG  Q++ T  ELRE+
Sbjct: 206 GNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELREL 265

Query: 228 LGIKNLYVHIRED--DL---IKSPTDEEEMKNSRIQRRVYELLSK 267
           + ++N  V + +   DL   +KS  DEE   N+ +++R +E+  K
Sbjct: 266 ISLENTKVILSKKNYDLCCHLKS--DEE---NTNMKKRQHEIFQK 305

Length = 506

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score =  103 bits (258), Expect = 1e-24
 Identities = 58/217 (26%), Positives = 80/217 (36%), Gaps = 11/217 (5%)

Query: 17  SNPLRVCVVGSGP-AGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVRSGVAPDHPETKI 73
               R  VVGSGP A  Y A + L           + + +P P GLVR GV  DH   K+
Sbjct: 3   PKDFREAVVGSGPEAAIYEAARCLDCGDPCITGCPVHNDIPEPIGLVREGV--DHEAIKL 60

Query: 74  VINQFSRVVQHERCSFFGNVTLGSSVSL-SELRQLYHVVVLAYGAESDRALGIPGEDLIG 132
           +    +      R    GN+  G+ V    EL      +  A G ++DR   IPGE  + 
Sbjct: 61  IHKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGE--LP 118

Query: 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIAS 192
                + V      P G   + DL S     +     VALD   +L    +     DI  
Sbjct: 119 GSRTGKKVAVIGAGPAGLAAADDL-SRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILD 177

Query: 193 YAWTALEGSSIRKVYLVGRRG-PVQAACTAKELREIL 228
                LE S + +  L  R G  +      KE   + 
Sbjct: 178 RRLELLERSGV-EFKLNVRVGRDITLEELLKEYDAVF 213

Length = 457

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 96.4 bits (241), Expect = 3e-22
 Identities = 56/187 (29%), Positives = 79/187 (42%), Gaps = 43/187 (22%)

Query: 12  FTALSSNPLRVCVVGSGPAGFYTAEK-TLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE 70
           F        +V V+G+GPAG   A +   K +    V I +      GL+R G+    PE
Sbjct: 133 FKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAGGLLRYGI----PE 185

Query: 71  TKIVINQFSRVVQHE-----------RCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAES 119
            ++  +    +V  E           R     N  +G  ++L ELR  Y  V +  GA  
Sbjct: 186 FRLPKD----IVDREVERLLKLGVEIRT----NTEVGRDITLDELRAGYDAVFIGTGAGL 237

Query: 120 DRALGIPGEDLIGVHSAREF------VWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALD 173
            R LGIPGE+L GV+SA +F             P GK +          V++G GN A+D
Sbjct: 238 PRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRV----------VVIGGGNTAMD 287

Query: 174 VARILLR 180
            AR   R
Sbjct: 288 AARTAKR 294

Length = 457

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           +V V+G+GPAG   A+    +     V + +R+    GL+  G+ PD    K ++++   
Sbjct: 125 KVAVIGAGPAGLAAADDL--SRAGHDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLE 181

Query: 81  VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
           +++     F  NV +G  ++L EL + Y  V LA GA   R L IPGED  GV  A +F+
Sbjct: 182 LLERSGVEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFL 241

Query: 141 WWYNGHPDGKNLSPDLKST--DTAVILGQGNVALDVARILLR 180
              N    G               V++G G+ A+D A   LR
Sbjct: 242 TRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALR 283

Length = 457

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           +V V+G+GPAG   A +  KA     V + + L  P G+V  G+ P+    K ++    +
Sbjct: 135 KVAVIGAGPAGLACASELAKAGHS--VTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIK 191

Query: 81  VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF- 139
            ++    +F  N  +G + +L EL   Y  V +  GA   + + IPGE+L GV+SA +F 
Sbjct: 192 TLKKLGVTFRMNFLVGKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFL 251

Query: 140 --VWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
                   +      +P + +  + V++G GN A+D AR  LR
Sbjct: 252 TRANLMKAYEFPHADTP-VYAGKSVVVIGGGNTAVDSARTALR 293

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 78.3 bits (193), Expect = 5e-16
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           +V VVGSGPAG   A++  +A     V + +R     GL+  G+ P+    K ++++   
Sbjct: 145 KVAVVGSGPAGLAAADQLNRAGHT--VTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRID 201

Query: 81  VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
           ++  E   F  N  +G  +S  EL++ +  VVLA GA   R L IPG +L G+H A EF+
Sbjct: 202 LLSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFL 261

Query: 141 WWYNGHPDGKNLS-PDLKSTD--TAVILGQGNVALDVARILLR 180
                   GK+              V++G G+   D     LR
Sbjct: 262 PSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLR 304

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 68/245 (27%), Positives = 96/245 (39%), Gaps = 62/245 (25%)

Query: 16  SSNPLRVCVVGSGPAGFYTAEKTL--KAHQEAQVDIIDRLPTPFGL-------------- 59
                +V ++G+GPAG   A   L    ++   V + D+LP P GL              
Sbjct: 15  PPTGKKVAIIGAGPAGL-AAAGYLACLGYE---VHVYDKLPEPGGLMLFGIPEFRIPIER 70

Query: 60  VRSGV-------APDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVV 112
           VR GV          H  TK+       + + E   F   +     VSL EL + Y  V+
Sbjct: 71  VREGVKELEEAGVVFHTRTKVCCG--EPLHEEEGDEFVERI-----VSLEELVKKYDAVL 123

Query: 113 LAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA----VILGQG 168
           +A G    R LGIPGEDL GV+SA E+++       G    P  K         V++G G
Sbjct: 124 IATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLG--YLPWEKVPPVEGKKVVVVGAG 181

Query: 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI- 227
             A+D A        E             L G+   KVYL  RR   +A     E+  + 
Sbjct: 182 LTAVDAA-------LE-----------AVLLGA--EKVYLAYRRTINEAPAGKYEIERLI 221

Query: 228 -LGIK 231
             G++
Sbjct: 222 ARGVE 226

Length = 352

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 77.1 bits (191), Expect = 1e-15
 Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 14/166 (8%)

Query: 21  RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
           +V VVGSGPAG   A++  +A H+   V + +R     GL+R G+ PD    K VI++  
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIGGLLRYGI-PDFKLEKEVIDRRI 200

Query: 80  RVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF 139
            +++ E   F  NV +G  ++  EL   Y  V L  GA   R LGIPG DL GVH A +F
Sbjct: 201 ELMEAEGIEFRTNVEVGKDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDF 260

Query: 140 VWWYNGHPDGKNLSPDLKSTDTA-----VILGQGNVALDVARILLR 180
           +        G    P +    +A     V++G G+  +D     +R
Sbjct: 261 LIQNTRRVLGDETEPFI----SAKGKHVVVIGGGDTGMDCVGTAIR 302

Length = 471

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 16/163 (9%)

Query: 21  RVCVVGSGPAGFYTAEKTL-KAHQEAQVDIIDRLPTPFGLVRSGVAPDH--PETKIVINQ 77
           +V ++G+GPAG   A   L K H    V I D      G++R G+ P    PE+  VI+ 
Sbjct: 195 KVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAGGMMRYGI-PRFRLPES--VIDA 248

Query: 78  FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
               ++     F  N   G  ++L EL++ +  V+LA GA+    +GIPGE+L GV S  
Sbjct: 249 DIAPLRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGI 308

Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           +F+        G  L P  K     V++G GN A+D AR  LR
Sbjct: 309 DFLRNVA---LGTALHPGKK----VVVIGGGNTAIDAARTALR 344

Length = 652

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 38/174 (21%)

Query: 21  RVCVVGSGPAGFYTAEK-TLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
           RV V+G GPAG   A       H    V I +  P   G++R G+ P +        +  
Sbjct: 139 RVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGGMMRYGI-PAY--------RLP 186

Query: 80  R-VVQHE-----------RCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
           R V+  E           R      V +G  ++L +L   +  V +A GA+  + L IPG
Sbjct: 187 REVLDAEIQRILDLGVEVRL----GVRVGEDITLEQLEGEFDAVFVAIGAQLGKRLPIPG 242

Query: 128 EDLIGVHSAREFVWWYN-GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           ED  GV  A +F+     G P               V++G GN A+D AR   R
Sbjct: 243 EDAAGVLDAVDFLRAVGEGEPP--------FLGKRVVVIGGGNTAMDAARTARR 288

Length = 564

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 15/172 (8%)

Query: 17  SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH--PETKIV 74
               +V V+GSGPAG  T    L A     V I + L  P G++  G+ P+   P+  +V
Sbjct: 138 KKGKKVAVIGSGPAGL-TCAGDL-AKMGYDVTIFEALHEPGGVLVYGI-PEFRLPKETVV 194

Query: 75  INQFSRVVQHERCSFFGNVTLGSSVSLSELRQ--LYHVVVLAYGAESDRALGIPGEDLIG 132
             +   + +        NV +G +V++ EL +   +  V +  GA   + +GIPGE+L G
Sbjct: 195 KKEIENIKKLG-VKIETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNG 253

Query: 133 VHSAREFVWWYNGHPDGKNLSPD----LKSTDTAVILGQGNVALDVARILLR 180
           V SA EF+   N     K   P+    +K      ++G GNVA+D AR  LR
Sbjct: 254 VFSANEFLTRVN---LMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALR 302

Length = 464

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 69.1 bits (169), Expect = 5e-13
 Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           RV V+G+GPAG   A+   +A    QV + DR P   GL+  G+ P     K V+++   
Sbjct: 143 RVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRRE 199

Query: 81  VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
           +       F  N  +G  +SL +L + Y  V L  G       G+PGED  GV  A  F+
Sbjct: 200 IFTAMGIEFHLNCEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFL 259

Query: 141 WWYNGHPDGKNLSPDLKSTDTA----VILGQGNVALDVARILLR 180
                   G   SP+    D      V+LG G+ A+D  R  +R
Sbjct: 260 IANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIR 303

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 19/167 (11%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           +V +VGSGPAG   A     A    +V + + L  P G++R G+    P  ++      +
Sbjct: 285 KVAIVGSGPAGLSAA--YFLATMGYEVTVYESLSKPGGVMRYGI----PSYRLPDEALDK 338

Query: 81  ---VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA- 136
               ++        N  +G  + L ELR+ +  V L+ G    R+  IPG D   V  A 
Sbjct: 339 DIAFIEALGVKIHLNTRVGKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL 398

Query: 137 ---REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
              RE   +  G  +G    P  K   + V++G GNVA+D+AR + R
Sbjct: 399 PLLREIRDYLRG--EG----PKPKIPRSLVVIGGGNVAMDIARSMAR 439

Length = 604

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 47/234 (20%)

Query: 17  SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVIN 76
            N  +V V+GSGPAG   A    K   +  V + + L    G+++ G+    PE ++   
Sbjct: 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYD--VTVFEALHEIGGVLKYGI----PEFRLP-- 480

Query: 77  QFSRVVQHE-------RCSFFGNVTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGE 128
              ++V  E          F  +V +G ++++ EL  + +  + +A GA     + IPGE
Sbjct: 481 --KKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEEGFKGIFIASGAGLPNFMNIPGE 538

Query: 129 DLIGVHSAREFVWWYNGHPDGKNLSPD----LKSTDTAVILGQGNVALDVARILLRPTEE 184
           +  GV S+ E++   N        SPD    +K      ++G GN A+D AR   R   E
Sbjct: 539 NSNGVMSSNEYLTRVNLM---DAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAE 595

Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL--GIKNLYVH 236
                               +V +V RR   +     +E++     GI+ L +H
Sbjct: 596 --------------------RVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLH 629

Length = 752

>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 64.3 bits (156), Expect = 2e-11
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 7/164 (4%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           +V V+G+GPAG   A+  + A    QVD+ DR P   G++  G+ P   + K V++Q   
Sbjct: 312 KVAVIGAGPAGLGCAD--ILARAGVQVDVFDRHPEIGGMLTFGIPPFKLD-KTVLSQRRE 368

Query: 81  VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
           +       F  N  +G  ++ S+L   Y  V +  G        +P ED  GV  A  F+
Sbjct: 369 IFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFL 428

Query: 141 WWYNGHPDGKNLSPDLKSTDT----AVILGQGNVALDVARILLR 180
             +     G   S +   TD      V+LG G+  +D  R  +R
Sbjct: 429 TAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIR 472

Length = 639

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 48/208 (23%)

Query: 14  ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI 73
           A   +  +V V+G+GPAG   A    +A     V + +R     G+V++           
Sbjct: 534 AGIGSRKKVAVIGAGPAGLAAAYFLARAGHP--VTVFEREENAGGVVKN----------- 580

Query: 74  VINQF---SRVVQH--ERCSFFG-NVTLGSSVSLS---ELRQLYHVVVLAYGAESDRALG 124
           +I QF   + ++QH  E     G     G S  L+      + Y  VV+A GA+ +  L 
Sbjct: 581 IIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTVEQLKNEGYDYVVVAIGADKNGGLK 640

Query: 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEE 184
           + G +   V  A  F+  Y        L   +      V++G GN A+D AR        
Sbjct: 641 LEGGNQ-NVIKALPFLEEYKNKGTALKLGKHV------VVVGGGNTAMDAAR-------- 685

Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRR 212
                       AL    + KV +V RR
Sbjct: 686 -----------AALRVPGVEKVTVVYRR 702

Length = 1019

>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 15/167 (8%)

Query: 22  VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRV 81
           + VVGSGP+G   A   L A +   V + +      G++R G+    PE ++       V
Sbjct: 309 IAVVGSGPSGLINA--YLLAVEGFPVTVFEAFHDLGGVLRYGI----PEFRLPNQLIDDV 362

Query: 82  VQHERC---SFFGNVTLGSSVSLSELRQL-YHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
           V+  +     F  N  +G + +L +L+   +  + +  GA     + +PGE L+GV SA 
Sbjct: 363 VEKIKLLGGRFVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSAN 422

Query: 138 EFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           EF+   N       D +   P++K  +  VI G GN A+D AR   R
Sbjct: 423 EFLTRVNLMRGLDDDYETPLPEVKGKEVFVI-GGGNTAMDAARTAKR 468

Length = 944

>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 33/224 (14%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           +V + GSGPAG   A   +K      V + + L    G+++ G+        I+  +  R
Sbjct: 432 KVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQR 489

Query: 81  VVQHERCSFFGNVTLGSSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSARE 138
           +V         N  +G + ++ +L   + +  V L  GA +   LGIPGE    V+SA E
Sbjct: 490 LVD-IGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANE 548

Query: 139 FVWWYNGHPDGKNLSPDLKST----DTAVILGQGNVALDVARILLRPTEELATTDIASYA 194
           F+   N    G +  P L +      + V++G GN A+D  R+  R              
Sbjct: 549 FLTRVNLM--GGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKR-------------- 592

Query: 195 WTALEGSSIRKVYLVGRRGPVQAACTAKELREIL--GIKNLYVH 236
              L   ++R VY   RR   +A    +E+R     GI   ++H
Sbjct: 593 ---LGAPTVRCVY---RRSEAEAPARIEEIRHAKEEGIDFFFLH 630

Length = 1006

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 29/176 (16%)

Query: 14  ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI 73
              S+  +V V+G+GPAG         A     V + ++   P G+V           K 
Sbjct: 532 QGKSSAHKVAVIGAGPAGLSAG--YFLARAGHPVTVFEKKEKPGGVV-----------KN 578

Query: 74  VINQF---SRVVQH--ERCSFFG-NVTLGSS--VSLSEL-RQLYHVVVLAYGAESDRALG 124
           +I +F   +  +Q   E   F G     G S  ++++EL  Q Y  V+LA GA     L 
Sbjct: 579 IIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTVAELKNQGYKYVILAIGAWKHGPLR 638

Query: 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           + G     V  + EF+  +   P               V++G GN A+D AR  LR
Sbjct: 639 LEG-GGERVLKSLEFLRAFKEGP------TINPLGKHVVVVGGGNTAMDAARAALR 687

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 7/164 (4%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           RV ++G+GPAG   A+  + A     V + DR P   GL+  G+ P     K ++ +   
Sbjct: 329 RVAIIGAGPAGLACAD--VLARNGVAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRRE 385

Query: 81  VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
           +       F  N  +G  +SL  L + Y  V +  G       G+P ED  GV+ A  F+
Sbjct: 386 IFSAMGIEFELNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFL 445

Query: 141 WWYNGHPDGKNLSPDLKSTDTA----VILGQGNVALDVARILLR 180
                   G    P+    +TA    V+LG G+ A+D  R  LR
Sbjct: 446 IANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALR 489

Length = 654

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 43/183 (23%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR----------LPTPFGL----------V 60
            V ++G GPAG   A   L A    +V +I+R          LP    L           
Sbjct: 1   DVVIIGGGPAG-LAAAIRL-ARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIG 58

Query: 61  RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
            +     + E  + +   + VV        G  T+      +     Y  +++A GA   
Sbjct: 59  LALPEEVYKEFGVEVLLGTEVVD----IDRGEKTVVLKDVETGREITYDKLIIATGA-RP 113

Query: 121 RALGIPGEDLI---GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177
           R  GIPG ++    GV  + E +         K +          V++G G + L++A  
Sbjct: 114 RIPGIPGVEVATLRGVIDSDEIL---ELLELPKRV----------VVVGGGYIGLELAAA 160

Query: 178 LLR 180
           L +
Sbjct: 161 LAK 163

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
PLN02852	491	ferredoxin-NADP+ reductase	100.0
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	100.0
PTZ00188	506	adrenodoxin reductase; Provisional	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.98
PRK12831	464	putative oxidoreductase; Provisional	99.98
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.97
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.97
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.96
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.96
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.96
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.96
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.95
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.95
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.95
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.95
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.95
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.94
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.94
PRK13984	604	putative oxidoreductase; Provisional	99.93
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.93
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.92
PRK06370	463	mercuric reductase; Validated	99.9
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.9
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.9
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.9
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.89
TIGR02053	463	MerA mercuric reductase. This model represents the	99.89
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.89
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.88
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.88
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.88
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.88
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.88
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.88
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.87
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.87
PTZ00058	561	glutathione reductase; Provisional	99.87
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.87
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.87
PRK06116	450	glutathione reductase; Validated	99.87
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.87
PLN02546	558	glutathione reductase	99.87
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.87
PRK10262	321	thioredoxin reductase; Provisional	99.87
PLN02507	499	glutathione reductase	99.86
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.86
PRK14694	468	putative mercuric reductase; Provisional	99.86
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.86
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.86
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.85
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.85
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.85
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.85
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.85
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.85
PRK07846	451	mycothione reductase; Reviewed	99.85
PRK13748	561	putative mercuric reductase; Provisional	99.85
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.84
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.84
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.84
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.84
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.84
PRK14727	479	putative mercuric reductase; Provisional	99.84
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.84
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.83
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.83
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.83
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.82
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.82
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.82
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.82
PTZ00052	499	thioredoxin reductase; Provisional	99.82
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.82
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.8
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.8
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.78
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.78
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.74
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.71
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.71
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.59
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.58
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.54
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.51
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.36
PRK09897	534	hypothetical protein; Provisional	99.27
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.27
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.12
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.11
COG2081	408	Predicted flavoproteins [General function predicti	99.01
KOG2755	334	consensus Oxidoreductase [General function predict	98.93
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.92
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	98.84
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.82
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.73
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.55
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.55
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.54
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.51
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.51
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.47
PLN02463	447	lycopene beta cyclase	98.47
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.46
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.43
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.43
PRK06847	375	hypothetical protein; Provisional	98.4
PLN02661	357	Putative thiazole synthesis	98.38
PRK10157	428	putative oxidoreductase FixC; Provisional	98.38
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.37
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.37
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.29
PRK10015	429	oxidoreductase; Provisional	98.29
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.27
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.27
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.27
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.26
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.24
TIGR02053	463	MerA mercuric reductase. This model represents the	98.24
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.23
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.23
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.23
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.22
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	98.22
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.21
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.21
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.19
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.18
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.18
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.17
PRK06834	488	hypothetical protein; Provisional	98.17
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.17
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.16
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.16
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.16
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.15
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.15
PRK06370	463	mercuric reductase; Validated	98.15
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.14
PRK06184	502	hypothetical protein; Provisional	98.14
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.14
PRK14694	468	putative mercuric reductase; Provisional	98.14
PRK08163	396	salicylate hydroxylase; Provisional	98.14
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.13
PRK07236	386	hypothetical protein; Provisional	98.13
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.13
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.12
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.12
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.12
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.11
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.11
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.1
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.09
PLN02697	529	lycopene epsilon cyclase	98.09
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.08
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.08
PRK14727	479	putative mercuric reductase; Provisional	98.08
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.08
PRK06116	450	glutathione reductase; Validated	98.07
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.06
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.06
PRK13748	561	putative mercuric reductase; Provisional	98.05
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.04
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.04
PLN02507	499	glutathione reductase	98.03
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.02
PRK08244	493	hypothetical protein; Provisional	98.02
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.01
PRK07588	391	hypothetical protein; Provisional	98.01
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.0
PRK11445	351	putative oxidoreductase; Provisional	98.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.98
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.97
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.97
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.97
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.96
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.95
PRK07846	451	mycothione reductase; Reviewed	97.94
PRK08401	466	L-aspartate oxidase; Provisional	97.94
PTZ00058	561	glutathione reductase; Provisional	97.93
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.92
COG3349	485	Uncharacterized conserved protein [Function unknow	97.92
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.92
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.91
PRK07208	479	hypothetical protein; Provisional	97.91
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.9
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.89
PLN02576	496	protoporphyrinogen oxidase	97.89
PTZ00052	499	thioredoxin reductase; Provisional	97.89
PRK07233	434	hypothetical protein; Provisional	97.87
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.86
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.86
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.86
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.86
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.86
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.85
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.85
PLN02268	435	probable polyamine oxidase	97.84
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.83
PLN02546	558	glutathione reductase	97.83
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.83
PRK06996	398	hypothetical protein; Provisional	97.82
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.8
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.78
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.76
PRK07804	541	L-aspartate oxidase; Provisional	97.76
PRK10262	321	thioredoxin reductase; Provisional	97.76
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.75
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.71
PRK06753	373	hypothetical protein; Provisional	97.71
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.7
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.7
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.69
PRK07045	388	putative monooxygenase; Reviewed	97.69
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.68
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.67
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.67
PLN02568	539	polyamine oxidase	97.65
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.64
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.62
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.6
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.58
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.57
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.57
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.56
PRK07538	413	hypothetical protein; Provisional	97.56
PRK08013	400	oxidoreductase; Provisional	97.56
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.55
PLN02529	738	lysine-specific histone demethylase 1	97.54
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.54
PRK05868	372	hypothetical protein; Validated	97.54
PRK09126	392	hypothetical protein; Provisional	97.53
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.51
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.51
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.49
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.48
PRK06475	400	salicylate hydroxylase; Provisional	97.47
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.47
PLN02676	487	polyamine oxidase	97.46
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.45
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.45
PLN02487	569	zeta-carotene desaturase	97.45
PRK07190	487	hypothetical protein; Provisional	97.42
PRK06126	545	hypothetical protein; Provisional	97.42
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.42
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.41
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.41
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.4
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.4
COG2081	408	Predicted flavoproteins [General function predicti	97.39
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.37
PRK06185	407	hypothetical protein; Provisional	97.36
PLN02612	567	phytoene desaturase	97.36
PLN02985	514	squalene monooxygenase	97.35
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.34
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.33
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.33
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.33
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.33
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.3
PRK05257	494	malate:quinone oxidoreductase; Validated	97.3
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.3
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.29
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.28
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.26
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.26
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.26
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.25
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.25
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.22
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.22
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.21
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.21
PRK12831	464	putative oxidoreductase; Provisional	97.19
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.19
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.18
PRK08274	466	tricarballylate dehydrogenase; Validated	97.17
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.16
PLN03000	881	amine oxidase	97.16
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.15
PRK07121	492	hypothetical protein; Validated	97.15
PRK08294	634	phenol 2-monooxygenase; Provisional	97.13
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.13
PRK12839	572	hypothetical protein; Provisional	97.13
COG0579	429	Predicted dehydrogenase [General function predicti	97.11
PTZ00367	567	squalene epoxidase; Provisional	97.11
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.11
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.11
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.11
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.11
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.08
PLN02976	1713	amine oxidase	97.07
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.04
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.04
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.03
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.02
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.02
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.02
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.01
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.99
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.98
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.98
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	96.97
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.97
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.96
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.95
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.95
PRK08275	554	putative oxidoreductase; Provisional	96.95
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	96.94
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.94
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	96.93
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.92
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	96.92
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.88
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.87
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	96.86
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.85
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.85
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.85
PRK13339	497	malate:quinone oxidoreductase; Reviewed	96.84
PLN02464	627	glycerol-3-phosphate dehydrogenase	96.84
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.82
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.8
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.78
COG3573	552	Predicted oxidoreductase [General function predict	96.76
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.75
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.73
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.72
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	96.71
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	96.7
PRK06175	433	L-aspartate oxidase; Provisional	96.7
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.68
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.67
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.66
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.66
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	96.65
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.65
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.65
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.62
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.61
PRK07395	553	L-aspartate oxidase; Provisional	96.58
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.58
PRK08071	510	L-aspartate oxidase; Provisional	96.56
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.55
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.51
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.51
PRK07236	386	hypothetical protein; Provisional	96.51
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.49
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.47
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.46
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.46
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.4
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	96.38
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.33
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.33
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.32
PRK09077	536	L-aspartate oxidase; Provisional	96.31
PRK07045	388	putative monooxygenase; Reviewed	96.28
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	96.22
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.21
PLN02815	594	L-aspartate oxidase	96.21
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.14
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.13
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.12
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.1
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.09
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.07
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.07
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	96.05
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	96.04
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.04
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	95.99
PRK06847	375	hypothetical protein; Provisional	95.99
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	95.88
PRK02106	560	choline dehydrogenase; Validated	95.87
PRK06126	545	hypothetical protein; Provisional	95.8
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	95.77
PLN02661	357	Putative thiazole synthesis	95.77
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.75
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.75
TIGR00275	400	flavoprotein, HI0933 family. The model when search	95.73
PRK06185	407	hypothetical protein; Provisional	95.68
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.65
PRK07512	513	L-aspartate oxidase; Provisional	95.64
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	95.62
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.62
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	95.53
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.53
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.5
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.49
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.49
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	95.48
PRK08244	493	hypothetical protein; Provisional	95.48
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	95.47
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.43
PRK07190	487	hypothetical protein; Provisional	95.38
PRK10015	429	oxidoreductase; Provisional	95.37
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.37
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.37
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.33
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	95.32
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.32
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.29
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	95.29
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.26
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	95.22
PRK06834	488	hypothetical protein; Provisional	95.2
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	95.12
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.11
PLN02852	491	ferredoxin-NADP+ reductase	95.11
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	95.05
KOG2852	380	consensus Possible oxidoreductase [General functio	95.05
PRK10157	428	putative oxidoreductase FixC; Provisional	94.98
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	94.97
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	94.97
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.96
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	94.95
PRK08274	466	tricarballylate dehydrogenase; Validated	94.93
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.9
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	94.88
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	94.87
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	94.85
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	94.79
PLN02463	447	lycopene beta cyclase	94.78
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	94.77
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	94.65
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.61
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.6
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	94.57
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.55
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	94.46
PRK06996	398	hypothetical protein; Provisional	94.44
PLN02785	587	Protein HOTHEAD	94.3
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.19
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	94.12
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	94.09
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.08
PTZ00188	506	adrenodoxin reductase; Provisional	94.07
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.02
PRK11883	451	protoporphyrinogen oxidase; Reviewed	93.96
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.86
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	93.85
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.8
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.8
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.78
PRK09496	453	trkA potassium transporter peripheral membrane com	93.75
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	93.74
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	93.74
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	93.7
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	93.68
PRK06475	400	salicylate hydroxylase; Provisional	93.68
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.66
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.64
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.62
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.61
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.59
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.51
PLN02268	435	probable polyamine oxidase	93.48
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	93.45
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	93.44
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.41
PRK07233	434	hypothetical protein; Provisional	93.4
PRK06567	1028	putative bifunctional glutamate synthase subunit b	93.3
PRK08163	396	salicylate hydroxylase; Provisional	93.29
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	93.28
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.27
PRK06184	502	hypothetical protein; Provisional	93.23
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	93.21
PRK05868	372	hypothetical protein; Validated	93.17
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.14
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.08
PRK13984	604	putative oxidoreductase; Provisional	92.92
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	92.89
PRK10669	558	putative cation:proton antiport protein; Provision	92.88
PRK06753	373	hypothetical protein; Provisional	92.87
COG3349	485	Uncharacterized conserved protein [Function unknow	92.76
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	92.74
PRK12416	463	protoporphyrinogen oxidase; Provisional	92.71
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	92.7
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.68
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	92.68
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.66
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	92.62
PRK05562	223	precorrin-2 dehydrogenase; Provisional	92.6
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	92.59
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	92.53
PLN02697	529	lycopene epsilon cyclase	92.52
PRK06175	433	L-aspartate oxidase; Provisional	92.52
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.48
PRK07208	479	hypothetical protein; Provisional	92.44
PRK15116	268	sulfur acceptor protein CsdL; Provisional	92.38
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.36
PRK07588	391	hypothetical protein; Provisional	92.35
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.33
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	92.28
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	92.21
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	92.21
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	92.2
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	92.18
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	92.17

>PLN02852 ferredoxin-NADP+ reductase

Probab=100.00  E-value=7.5e-46  Score=358.31  Aligned_cols=317  Identities=77%  Similarity=1.181  Sum_probs=270.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++|+||||||||++||..|++..++++|+|||+.+.+||+++|++.|+++..+.+...+.+++...+++|+.+..++
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg  103 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG  103 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC
Confidence            35689999999999999999998743459999999999999999999989998888888888888888899999999999


Q ss_pred             eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHH
Q 019876           97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR  176 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~  176 (334)
                      .+++++++...||+||||||+..++.++|||.+.+||+++.+|+.+++.++++..+...+..+++|+|||+|++|+|+|+
T Consensus       104 ~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar  183 (491)
T PLN02852        104 RDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCAR  183 (491)
T ss_pred             ccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHH
Confidence            88888888778999999999964578899999999999999999999887766544444457899999999999999999


Q ss_pred             HHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccH
Q 019876          177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR  256 (334)
Q Consensus       177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~  256 (334)
                      .|.+...++..|||++++++.|+..++++|+|++||++...+|+.+|++++++++++.+++++..+..++.+..+...++
T Consensus       184 ~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r  263 (491)
T PLN02852        184 ILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASR  263 (491)
T ss_pred             HHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccch
Confidence            99999999999999999999999999999999999999999999999999999999999999888765555555566788


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeecC-CCCcceeecCCceEeC
Q 019876          257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG-GPGKQYAVGTGEFEDL  333 (334)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~  333 (334)
                      ..+|..++|++.............++|+|+|..+|++|....+++++|++|++..+++..+ ++|+..+++||++++|
T Consensus       264 ~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i  341 (491)
T PLN02852        264 PKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDL  341 (491)
T ss_pred             hhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEE
Confidence            9999999998764310000011348999999999999982111137899999999998754 4788888999998775

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=100.00  E-value=4.6e-44  Score=322.32  Aligned_cols=309  Identities=54%  Similarity=0.840  Sum_probs=272.5

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      +...++|+|||+||||+++|..|+++.++++|+|+|+.+.++|+.+||++|+++..+.+...|...+++.+..|+.|..+
T Consensus        17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v   96 (468)
T KOG1800|consen   17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV   96 (468)
T ss_pred             ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence            44556999999999999999999998778999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876           96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA  175 (334)
Q Consensus        96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A  175 (334)
                      +.++++.+++..||+||||+|+..++.+.|||++++||+++++|..||+..|+..++..++. +.+|+|||.|++++|+|
T Consensus        97 G~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls-~~~vvIvG~GNVAlDvA  175 (468)
T KOG1800|consen   97 GRDVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLS-GRKVVIVGNGNVALDVA  175 (468)
T ss_pred             cccccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccc-cceEEEEccCchhhhhh
Confidence            99999999999999999999998899999999999999999999999999999998888886 99999999999999999


Q ss_pred             HHHccCCccc-ccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhc
Q 019876          176 RILLRPTEEL-ATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN  254 (334)
Q Consensus       176 ~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~  254 (334)
                      +.|......+ ..|||+.++|+.+++..+++|+|+.||+++...|+.++||+.++.+|++.++.+..|+.-..+..++..
T Consensus       176 RiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~  255 (468)
T KOG1800|consen  176 RILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQ  255 (468)
T ss_pred             hhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccc
Confidence            9999866665 599999999999999999999999999999999999999999999999999999888866666666665


Q ss_pred             cHHHHHHHHHHHHHHhccC---CCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeecCCCCcceeecCCceE
Q 019876          255 SRIQRRVYELLSKAAASAS---SQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFE  331 (334)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~  331 (334)
                      .|...|+.+++.+.+.++.   .......+-++++|...|.+|.  . ..+.|.++.|..+.+..    ++ .++||++.
T Consensus       256 ~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~--~-~~~~v~~~~~~~t~l~~----~~-~~~tg~~e  327 (468)
T KOG1800|consen  256 HRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAIL--P-GADGVSGVRFQVTILEG----TQ-AVPTGAFE  327 (468)
T ss_pred             cCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhc--c-CcccccceEEEeeeehh----hc-ccccCceE
Confidence            6777888888777666522   1223345679999999999998  4 24569999999988763    22 56677776


Q ss_pred             eC
Q 019876          332 DL  333 (334)
Q Consensus       332 ~~  333 (334)
                      +|
T Consensus       328 ~~  329 (468)
T KOG1800|consen  328 TL  329 (468)
T ss_pred             ee
Confidence            65

>PTZ00188 adrenodoxin reductase; Provisional

Probab=100.00  E-value=1.7e-41  Score=323.22  Aligned_cols=306  Identities=29%  Similarity=0.540  Sum_probs=246.5

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ...+++|+||||||||++||.+|++.. +++|+|||+.+.+||+++|++.|+++..+.+...+...+...+++|+.+..+
T Consensus        36 ~~~~krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V  114 (506)
T PTZ00188         36 EAKPFKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV  114 (506)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence            345789999999999999999876432 4999999999999999999999998888888888888777789999999999


Q ss_pred             ceEEecccceeccCeEEEeccCCCCCCCCCC------------Ccc----CCCccchhhHHHHhcCCCCCC---CCCCC-
Q 019876           96 GSSVSLSELRQLYHVVVLAYGAESDRALGIP------------GED----LIGVHSAREFVWWYNGHPDGK---NLSPD-  155 (334)
Q Consensus        96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ip------------G~~----~~~v~~~~~~~~~~~~~~~~~---~~~~~-  155 (334)
                      +.+++.+++...||+||+|||+. +  +.+|            |++    ..|+|++.+|..||+.++++.   ..... 
T Consensus       115 G~Dvt~eeL~~~YDAVIlAtGA~-~--l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL  191 (506)
T PTZ00188        115 GVDLKMEELRNHYNCVIFCCGAS-E--VSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYL  191 (506)
T ss_pred             cCccCHHHHHhcCCEEEEEcCCC-C--CCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCccccccccccc
Confidence            98888888888999999999995 3  3455            655    679999999999999988653   11111 


Q ss_pred             --CCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCce
Q 019876          156 --LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNL  233 (334)
Q Consensus       156 --~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv  233 (334)
                        +...++++|||+||+|+|+|+.|++.+++|..|||++++|+.|++.++++|+|+.||++.++.|+.+|++|+++++++
T Consensus       192 ~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~  271 (506)
T PTZ00188        192 NSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENT  271 (506)
T ss_pred             cccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCC
Confidence              225689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCccCCCCCchhhhhccHHHHH----HHHHHHHHHhc-cCCCCCCCceEEEEEeccccceeeccccCCCCeeEEE
Q 019876          234 YVHIREDDLIKSPTDEEEMKNSRIQRR----VYELLSKAAAS-ASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH  308 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~  308 (334)
                      ++++++..++............+..+|    ..++|++.... .........+.|.|+|..+|++|.  + .+++|++|+
T Consensus       272 ~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~--~-~~~~v~~v~  348 (506)
T PTZ00188        272 KVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIR--P-IDGAMKNVE  348 (506)
T ss_pred             eEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEE--C-CCCcEeEEE
Confidence            999998877531110011234666666    55666665420 001101245899999999999999  6 357999999


Q ss_pred             EEEeeeecCCCCcceeecCCceEeC
Q 019876          309 FEKTALKGGGPGKQYAVGTGEFEDL  333 (334)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~  333 (334)
                      ++.|++..   |+.  ++||++.+|
T Consensus       349 ~~~n~l~~---~~~--~~tg~~~~~  368 (506)
T PTZ00188        349 LELNKNVP---MSF--SSFKENKVL  368 (506)
T ss_pred             EEEeeccc---Ccc--CCCCeeEEE
Confidence            99998864   332  667776665

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=2.8e-31  Score=275.32  Aligned_cols=240  Identities=24%  Similarity=0.362  Sum_probs=191.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++|+|||||||||+||.+|++.|  ++|+|||+.+.+||+++||+ |.+++++++.++..+.++..|++|++++.++
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~~~GG~l~yGI-P~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG  380 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFHDLGGVLRYGI-PEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG  380 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCCCCceEEccC-CCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence            45799999999999999999999997  99999999999999999998 8899999999988888999999999999999


Q ss_pred             eEEeccccee-ccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCC-CC--CCCCCCCCeEEEEcCCHHHH
Q 019876           97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK-NL--SPDLKSTDTAVILGQGNVAL  172 (334)
Q Consensus        97 ~~v~~~~~~~-~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~-~~--~~~~~~~k~vvVIG~G~~g~  172 (334)
                      .+++++++.. .||+||||||++.|+.++|||.+.+||+++.+|+...+...... ..  ......+|+|+|||||++|+
T Consensus       381 ~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~  460 (944)
T PRK12779        381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAM  460 (944)
T ss_pred             cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHH
Confidence            9999888764 79999999999769999999999999999999987543211000 00  00112689999999999999


Q ss_pred             HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhh
Q 019876          173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM  252 (334)
Q Consensus       173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~  252 (334)
                      |+|..+.+                    .|+ +||+++|++...                            ++....  
T Consensus       461 D~A~ta~R--------------------~Ga-~Vtlv~rr~~~~----------------------------mpa~~~--  489 (944)
T PRK12779        461 DAARTAKR--------------------LGG-NVTIVYRRTKSE----------------------------MPARVE--  489 (944)
T ss_pred             HHHHHHHH--------------------cCC-EEEEEEecCccc----------------------------ccccHH--
Confidence            99999986                    787 599999986421                            111111  


Q ss_pred             hccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccC-CCCeeEEEEEEeeee-cCCCCcceeecCCce
Q 019876          253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER-SGHVSGVHFEKTALK-GGGPGKQYAVGTGEF  330 (334)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~-~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~  330 (334)
                                 .+...          .++||+|+++..|++|.  +++ +++|+++++....+. .|.+|+++++++|+.
T Consensus       490 -----------e~~~a----------~eeGV~~~~~~~p~~i~--~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e  546 (944)
T PRK12779        490 -----------ELHHA----------LEEGINLAVLRAPREFI--GDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEI  546 (944)
T ss_pred             -----------HHHHH----------HHCCCEEEeCcceEEEE--ecCCCCEEEEEEEEEEEeccccCcCceeeecCCce
Confidence                       11111          14699999999999998  521 247999998877664 466899888888876


Q ss_pred             EeC
Q 019876          331 EDL  333 (334)
Q Consensus       331 ~~~  333 (334)
                      +.+
T Consensus       547 ~~i  549 (944)
T PRK12779        547 ERV  549 (944)
T ss_pred             EEE
Confidence            654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.98  E-value=6.3e-31  Score=274.78  Aligned_cols=240  Identities=27%  Similarity=0.389  Sum_probs=190.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      +.++|+|||||||||+||.+|++.+  ++|+|||+.+.+||++++++ |.+..++++.....+.+...|++|++++.++.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G--~~VtV~E~~~~~GG~l~~gi-p~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~  505 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQYGI-PSFRLPRDIIDREVQRLVDIGVKIETNKVIGK  505 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCcceeeccC-CccCCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence            5689999999999999999999997  99999999999999999988 77777888888888888999999999988877


Q ss_pred             EEecccce--eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCC--CCCCCCCCCCCCCeEEEEcCCHHHHH
Q 019876           98 SVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP--DGKNLSPDLKSTDTAVILGQGNVALD  173 (334)
Q Consensus        98 ~v~~~~~~--~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~k~vvVIG~G~~g~e  173 (334)
                      ++++++..  ..||+||||||++.|+.++|||.+.++|++..+|+...+...  .+.........+|+|+|||||++|+|
T Consensus       506 ~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D  585 (1006)
T PRK12775        506 TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMD  585 (1006)
T ss_pred             ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHH
Confidence            77666553  479999999999668999999999999999999987654221  11111122347899999999999999


Q ss_pred             HHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhh
Q 019876          174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK  253 (334)
Q Consensus       174 ~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~  253 (334)
                      +|+.+.+                    .|+++|++++|+.....+....++                             
T Consensus       586 ~A~~a~r--------------------lGa~~Vtiv~rr~~~em~a~~~e~-----------------------------  616 (1006)
T PRK12775        586 CLRVAKR--------------------LGAPTVRCVYRRSEAEAPARIEEI-----------------------------  616 (1006)
T ss_pred             HHHHHHH--------------------cCCCEEEEEeecCcccCCCCHHHH-----------------------------
Confidence            9998886                    788889999988644211111111                             


Q ss_pred             ccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeecCCceEe
Q 019876          254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED  332 (334)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~~~  332 (334)
                                  + .+         .+.||+|++++.|++|.  ++++|+|++|++.++.+. .|.+|+++|+++|+.+.
T Consensus       617 ------------~-~a---------~eeGI~~~~~~~p~~i~--~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~  672 (1006)
T PRK12775        617 ------------R-HA---------KEEGIDFFFLHSPVEIY--VDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKD  672 (1006)
T ss_pred             ------------H-HH---------HhCCCEEEecCCcEEEE--eCCCCeEEEEEEEEEEecccCCCCCccccCCCceEE
Confidence                        1 11         25699999999999997  434689999999887765 35679988888887654


Q ss_pred             C
Q 019876          333 L  333 (334)
Q Consensus       333 ~  333 (334)
                      |
T Consensus       673 i  673 (1006)
T PRK12775        673 L  673 (1006)
T ss_pred             E
Confidence            3

>PRK12831 putative oxidoreductase; Provisional

Probab=99.98  E-value=1.2e-30  Score=253.90  Aligned_cols=239  Identities=30%  Similarity=0.429  Sum_probs=181.6

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhH-HHHHHHHHhhcCCcEEEeCeE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI-VINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~-~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ..+.++|+||||||||++||.+|++.+  ++|+|||+.+.+||++.|++ |.+..+.+ +..+..+++++.|++++.++.
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~~gv~i~~~~~  213 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMG--YDVTIFEALHEPGGVLVYGI-PEFRLPKETVVKKEIENIKKLGVKIETNVV  213 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCCCeeeecC-CCccCCccHHHHHHHHHHHHcCCEEEcCCE
Confidence            456799999999999999999999997  99999999988999999987 66655544 777777788889999999998


Q ss_pred             EceEEecccce--eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCC-CCCCCCCCCeEEEEcCCHHH
Q 019876           95 LGSSVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVA  171 (334)
Q Consensus        95 v~~~v~~~~~~--~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~k~vvVIG~G~~g  171 (334)
                      ++.+++.++..  ..||+||||||++.|+.+++||.+.++|++..+|+...+....+.. .......+++|+|||+|++|
T Consensus       214 v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va  293 (464)
T PRK12831        214 VGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVA  293 (464)
T ss_pred             ECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHH
Confidence            87666665542  3699999999995588999999999999999999865432221110 11123478999999999999


Q ss_pred             HHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhh
Q 019876          172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE  251 (334)
Q Consensus       172 ~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~  251 (334)
                      +|+|..|.+                    .|++ ||+++|++...                            ++....+
T Consensus       294 ~d~A~~l~r--------------------~Ga~-Vtlv~r~~~~~----------------------------m~a~~~e  324 (464)
T PRK12831        294 MDAARTALR--------------------LGAE-VHIVYRRSEEE----------------------------LPARVEE  324 (464)
T ss_pred             HHHHHHHHH--------------------cCCE-EEEEeecCccc----------------------------CCCCHHH
Confidence            999999996                    7875 99999986421                            1111111


Q ss_pred             hhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCc
Q 019876          252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGE  329 (334)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~  329 (334)
                                   +.+ +         .+.||+|++++.|++|.  ++++|++++|++...++. .+.+|++.|+. +|+
T Consensus       325 -------------~~~-a---------~~eGV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~  379 (464)
T PRK12831        325 -------------VHH-A---------KEEGVIFDLLTNPVEIL--GDENGWVKGMKCIKMELGEPDASGRRRPVEIEGS  379 (464)
T ss_pred             -------------HHH-H---------HHcCCEEEecccceEEE--ecCCCeEEEEEEEEEEecCcCCCCCccceecCCc
Confidence                         111 1         15699999999999997  434678999999877665 35578877765 454


Q ss_pred             eE
Q 019876          330 FE  331 (334)
Q Consensus       330 ~~  331 (334)
                      ..
T Consensus       380 ~~  381 (464)
T PRK12831        380 EF  381 (464)
T ss_pred             eE
Confidence            43

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.97  E-value=3.4e-30  Score=250.02  Aligned_cols=238  Identities=27%  Similarity=0.398  Sum_probs=180.4

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      +.+.++|+|||+||||++||..|++.+  ++|+|||+.+.+||.+.+++ |.+..++++.....+.+.+.+++++.+..+
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  206 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAG--HSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKTLKKLGVTFRMNFLV  206 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcEeeecC-CCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence            345689999999999999999999987  99999999999999998887 666666677777777788889999999888


Q ss_pred             ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCC--CCCCCCCCCCCeEEEEcCCHHHHH
Q 019876           96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKSTDTAVILGQGNVALD  173 (334)
Q Consensus        96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~k~vvVIG~G~~g~e  173 (334)
                      +.++++++....||+||||||++.|+.|++||.+.++|++..+++........+  .........+++|+|||+|++|+|
T Consensus       207 ~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d  286 (449)
T TIGR01316       207 GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVD  286 (449)
T ss_pred             CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHH
Confidence            777777665568999999999855888999999999999998887543322111  011112346899999999999999


Q ss_pred             HHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhh
Q 019876          174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK  253 (334)
Q Consensus       174 ~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~  253 (334)
                      +|..+.+                    .|.+ ||+++|+++...+                            ....+  
T Consensus       287 ~A~~l~~--------------------~G~~-Vtlv~~~~~~~~~----------------------------~~~~~--  315 (449)
T TIGR01316       287 SARTALR--------------------LGAE-VHCLYRRTREDMT----------------------------ARVEE--  315 (449)
T ss_pred             HHHHHHH--------------------cCCE-EEEEeecCcccCC----------------------------CCHHH--
Confidence            9999986                    6875 9999998643211                            11110  


Q ss_pred             ccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCce
Q 019876          254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF  330 (334)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~~  330 (334)
                                 + +.+         .++||+|++++.|++|.  ++++|++++|.+.+..+. .+++|+++|++ +|+.
T Consensus       316 -----------~-~~l---------~~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~  371 (449)
T TIGR01316       316 -----------I-AHA---------EEEGVKFHFLCQPVEII--GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAE  371 (449)
T ss_pred             -----------H-HHH---------HhCCCEEEeccCcEEEE--EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCce
Confidence                       0 111         25699999999999998  523578999999876554 34578776664 4443

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.97  E-value=1.6e-29  Score=259.50  Aligned_cols=238  Identities=26%  Similarity=0.400  Sum_probs=183.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++|+||||||||++||.+|++.+  ++|+|||+.+.+||++.|++ |.+..++++.....+.+.+.|++|+.++.++
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~  505 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRG--YDVTVFEALHEIGGVLKYGI-PEFRLPKKIVDVEIENLKKLGVKFETDVIVG  505 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCCCCCHHHHHHHHHHHHHCCCEEECCCEEC
Confidence            46789999999999999999999997  99999999988999999988 7777777777777778888999999999988


Q ss_pred             eEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCC-CCCCCCCCCeEEEEcCCHHHHHH
Q 019876           97 SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVALDV  174 (334)
Q Consensus        97 ~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~k~vvVIG~G~~g~e~  174 (334)
                      .++++++.. ..||+||||||++.|+.+++||.+.+||++..+|+...+....+.. .......+++|+|||||++|+|+
T Consensus       506 ~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~  585 (752)
T PRK12778        506 KTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDS  585 (752)
T ss_pred             CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHH
Confidence            777777654 4699999999996688999999999999999998875442221110 01123468999999999999999


Q ss_pred             HHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhc
Q 019876          175 ARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN  254 (334)
Q Consensus       175 A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~  254 (334)
                      |..+.+                    .|+++||+++|++...                            ++....+   
T Consensus       586 A~~~~r--------------------~Ga~~Vtlv~r~~~~~----------------------------~~~~~~e---  614 (752)
T PRK12778        586 ARTAKR--------------------LGAERVTIVYRRSEEE----------------------------MPARLEE---  614 (752)
T ss_pred             HHHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHH---
Confidence            999986                    7887799999986421                            1111111   


Q ss_pred             cHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCce
Q 019876          255 SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF  330 (334)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~~  330 (334)
                                +. .+         .+.||+|++++.|.+|.  ++++|++++|++.+..+. .+.+|+++|+. +|+.
T Consensus       615 ----------~~-~~---------~~~GV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~  670 (752)
T PRK12778        615 ----------VK-HA---------KEEGIEFLTLHNPIEYL--ADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGST  670 (752)
T ss_pred             ----------HH-HH---------HHcCCEEEecCcceEEE--ECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCe
Confidence                      01 11         25699999999999997  434578999999877654 34567766654 4443

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.96  E-value=1.8e-28  Score=248.21  Aligned_cols=240  Identities=27%  Similarity=0.356  Sum_probs=182.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++|+||||||||++||.+|++.|  ++|+|||+.+.+||++.+++ |.+.+.+++.....++++..|++++.++.++
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~  401 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRREIFSAMGIEFELNCEVG  401 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceeeecC-CCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence            35789999999999999999999997  99999999999999999988 7777778888777788888999999999887


Q ss_pred             eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhc-CCCCCCCC---CCCCCCCCeEEEEcCCHHHH
Q 019876           97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN-GHPDGKNL---SPDLKSTDTAVILGQGNVAL  172 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~-~~~~~~~~---~~~~~~~k~vvVIG~G~~g~  172 (334)
                      .+++..+....||+||+|||++.+..+++||.+.+|++...+|+.... ........   ......+++|+|||+|++|+
T Consensus       402 ~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~  481 (654)
T PRK12769        402 KDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAM  481 (654)
T ss_pred             CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHH
Confidence            666665555689999999999767788999999999998776653211 10000000   00113689999999999999


Q ss_pred             HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhh
Q 019876          173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM  252 (334)
Q Consensus       173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~  252 (334)
                      |+|..+.+                    .|+++||+++|++....+..+.++                            
T Consensus       482 d~A~~a~r--------------------~ga~~Vt~i~~~~~~~~~~~~~e~----------------------------  513 (654)
T PRK12769        482 DCVRTALR--------------------HGASNVTCAYRRDEANMPGSKKEV----------------------------  513 (654)
T ss_pred             HHHHHHHH--------------------cCCCeEEEeEecCCCCCCCCHHHH----------------------------
Confidence            99988775                    788889999998754322222111                            


Q ss_pred             hccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCce
Q 019876          253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF  330 (334)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~~  330 (334)
                                    +.+         .++||+|+++..|++|.  ++++|++++|++....+. .+++|+++|++ +|+.
T Consensus       514 --------------~~~---------~~~Gv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~  568 (654)
T PRK12769        514 --------------KNA---------REEGANFEFNVQPVALE--LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSE  568 (654)
T ss_pred             --------------HHH---------HHcCCeEEeccCcEEEE--ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCce
Confidence                          111         25699999999999997  424689999999876654 35578876665 4554


Q ss_pred             Ee
Q 019876          331 ED  332 (334)
Q Consensus       331 ~~  332 (334)
                      +.
T Consensus       569 ~~  570 (654)
T PRK12769        569 FV  570 (654)
T ss_pred             EE
Confidence            44

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.96  E-value=4.1e-28  Score=244.73  Aligned_cols=240  Identities=26%  Similarity=0.385  Sum_probs=183.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++|+|||+||+|+++|..|++.|  ++|+|||+.+.+||+++|++ |.+...+++.....+++...|++++.++.++
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~  384 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGMLTFGI-PPFKLDKTVLSQRREIFTAMGIDFHLNCEIG  384 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCCCCCCeeeccC-CcccCCHHHHHHHHHHHHHCCeEEEcCCccC
Confidence            35799999999999999999999997  89999999999999999998 6666777777777788889999999999887


Q ss_pred             eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhc----CCCCCCCCCCCCCCCCeEEEEcCCHHHH
Q 019876           97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL  172 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~k~vvVIG~G~~g~  172 (334)
                      .++++.+....||+||+|||+..++.+++||.+.+|++++.+|+....    ...+..........+++|+|||+|++|+
T Consensus       385 ~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~  464 (639)
T PRK12809        385 RDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTM  464 (639)
T ss_pred             CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHH
Confidence            666666666689999999999767778999999999998877764321    1111000001123689999999999999


Q ss_pred             HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhh
Q 019876          173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM  252 (334)
Q Consensus       173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~  252 (334)
                      |+|..+.+                    .|+++||+++|++....+....++                            
T Consensus       465 d~a~~~~~--------------------~Ga~~Vt~v~rr~~~~~~~~~~e~----------------------------  496 (639)
T PRK12809        465 DCLRTSIR--------------------LNAASVTCAYRRDEVSMPGSRKEV----------------------------  496 (639)
T ss_pred             HHHHHHHH--------------------cCCCeEEEeeecCcccCCCCHHHH----------------------------
Confidence            99988775                    688889999998754322221111                            


Q ss_pred             hccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCce
Q 019876          253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF  330 (334)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~~  330 (334)
                                   .. +         .++||+|++++.|++|.  ++++|+|++|++..+.+. .+++|+++|++ +|+.
T Consensus       497 -------------~~-a---------~~eGv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~  551 (639)
T PRK12809        497 -------------VN-A---------REEGVEFQFNVQPQYIA--CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSE  551 (639)
T ss_pred             -------------HH-H---------HHcCCeEEeccCCEEEE--ECCCCeEEEEEEEEEEecCcCCCCCccceecCCce
Confidence                         11 1         15699999999999997  534678999998776654 35678877765 4554


Q ss_pred             Ee
Q 019876          331 ED  332 (334)
Q Consensus       331 ~~  332 (334)
                      +.
T Consensus       552 ~~  553 (639)
T PRK12809        552 FE  553 (639)
T ss_pred             EE
Confidence            43

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.96  E-value=6.3e-28  Score=235.07  Aligned_cols=234  Identities=29%  Similarity=0.411  Sum_probs=176.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++|+|||+||+|+++|.+|++.+  ++|+|||+.+.+||++++++ |.+...+++.....+++.+.|++++.++.++
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~  215 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRREIFTAMGIEFHLNCEVG  215 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeecC-ccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence            35689999999999999999999987  89999999999999999987 7777777888778888889999999999887


Q ss_pred             eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhc----CCCCCCCCCCCCCCCCeEEEEcCCHHHH
Q 019876           97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL  172 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~k~vvVIG~G~~g~  172 (334)
                      .++..++....||+||+|||+..+..+++||.+.+||+++.+|+....    ...+..........+++|+|||+|++|+
T Consensus       216 ~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~  295 (467)
T TIGR01318       216 RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAM  295 (467)
T ss_pred             CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHH
Confidence            665555555589999999999645678999999999998877654211    1111101111113589999999999999


Q ss_pred             HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhh
Q 019876          173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM  252 (334)
Q Consensus       173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~  252 (334)
                      |+|..+.+                    .|+++|||++|++....+....++                            
T Consensus       296 d~A~~a~~--------------------~Ga~~Vtvv~r~~~~~~~~~~~e~----------------------------  327 (467)
T TIGR01318       296 DCVRTAIR--------------------LGAASVTCAYRRDEANMPGSRREV----------------------------  327 (467)
T ss_pred             HHHHHHHH--------------------cCCCeEEEEEecCcccCCCCHHHH----------------------------
Confidence            99998875                    687789999998754322211111                            


Q ss_pred             hccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec
Q 019876          253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG  326 (334)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~  326 (334)
                                   . .+         .++||+|++++.|++|.  ++++|++++|++..+.+. .+++|+..|+.
T Consensus       328 -------------~-~~---------~~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~  377 (467)
T TIGR01318       328 -------------A-NA---------REEGVEFLFNVQPVYIE--CDEDGRVTGVGLVRTALGEPDADGRRRPVP  377 (467)
T ss_pred             -------------H-HH---------HhcCCEEEecCCcEEEE--ECCCCeEEEEEEEEEEecccCCCCCcccee
Confidence                         1 11         15699999999999997  423578999998766543 34567766554

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.96  E-value=9.2e-28  Score=233.82  Aligned_cols=227  Identities=30%  Similarity=0.461  Sum_probs=174.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      +...++|+||||||||+++|..|++.+  ++|+|||+.+.+||.+.+++ |.+....++..+..+++...+++++.++.+
T Consensus       137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g--~~V~lie~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  213 (457)
T PRK11749        137 PKTGKKVAVIGAGPAGLTAAHRLARKG--YDVTIFEARDKAGGLLRYGI-PEFRLPKDIVDREVERLLKLGVEIRTNTEV  213 (457)
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCcEeeccC-CCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence            345789999999999999999999987  99999999999999998877 666666677777778888889999999888


Q ss_pred             ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876           96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA  175 (334)
Q Consensus        96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A  175 (334)
                      +..+++++....||+||||||++.|+.+++||.+.+++++..+++.........    ..+..+++|+|||+|++|+|+|
T Consensus       214 ~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~----~~~~~g~~VvViGgG~~g~e~A  289 (457)
T PRK11749        214 GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD----YDLPVGKRVVVIGGGNTAMDAA  289 (457)
T ss_pred             CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhcccc----ccCCCCCeEEEECCCHHHHHHH
Confidence            766665555578999999999955788899999888999888887655432111    1233689999999999999999


Q ss_pred             HHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhcc
Q 019876          176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS  255 (334)
Q Consensus       176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~  255 (334)
                      ..|.+                    .|+++|++++|++....+....++                               
T Consensus       290 ~~l~~--------------------~G~~~Vtlv~~~~~~~~~~~~~~~-------------------------------  318 (457)
T PRK11749        290 RTAKR--------------------LGAESVTIVYRRGREEMPASEEEV-------------------------------  318 (457)
T ss_pred             HHHHH--------------------cCCCeEEEeeecCcccCCCCHHHH-------------------------------
Confidence            99986                    688789999998643211111110                               


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcce
Q 019876          256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQY  323 (334)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~  323 (334)
                                 +.+         .+.||+|++++.|++|.  + +++++++|.+.+..+. .+.+|++.
T Consensus       319 -----------~~~---------~~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~  364 (457)
T PRK11749        319 -----------EHA---------KEEGVEFEWLAAPVEIL--G-DEGRVTGVEFVRMELGEPDASGRRR  364 (457)
T ss_pred             -----------HHH---------HHCCCEEEecCCcEEEE--e-cCCceEEEEEEEEEecCcCCCCCcc
Confidence                       111         25699999999999998  5 3556788988776544 24466643

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.95  E-value=6.5e-27  Score=240.09  Aligned_cols=227  Identities=26%  Similarity=0.358  Sum_probs=169.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++|+||||||||++||.+|++.|  ++|+|||+.+.+||.+++++ |.+..+.++.....+++...|++++.++.+ 
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~~~GG~lr~~I-P~~Rlp~evL~~die~l~~~GVe~~~gt~V-  612 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREENAGGVVKNII-PQFRIPAELIQHDIEFVKAHGVKFEFGCSP-  612 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecccccCcceeeec-ccccccHHHHHHHHHHHHHcCCEEEeCcee-
Confidence            46789999999999999999999997  99999999999999998876 888777777777777888889999999877 


Q ss_pred             eEEeccccee-ccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876           97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA  175 (334)
Q Consensus        97 ~~v~~~~~~~-~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A  175 (334)
                       ++++++... .||+||||||++.+..+++||.+ +++++..+++..++...      ..+..+++|+|||||++|+|+|
T Consensus       613 -di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~------~~~~~GKrVVVIGGGnVAmD~A  684 (1019)
T PRK09853        613 -DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKG------TALKLGKHVVVVGGGNTAMDAA  684 (1019)
T ss_pred             -EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhc------ccccCCCEEEEECCChHHHHHH
Confidence             345555544 59999999999667778899875 67888878876553221      1234689999999999999999


Q ss_pred             HHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhcc
Q 019876          176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS  255 (334)
Q Consensus       176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~  255 (334)
                      +.+.+                   ..++++|++++|++....+...+++                               
T Consensus       685 r~a~R-------------------lgGakeVTLVyRr~~~~MPA~~eEl-------------------------------  714 (1019)
T PRK09853        685 RAALR-------------------VPGVEKVTVVYRRTKQEMPAWREEY-------------------------------  714 (1019)
T ss_pred             HHHHh-------------------cCCCceEEEEEccCcccccccHHHH-------------------------------
Confidence            98875                   1255789999998743212111111                               


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeecCCceEe
Q 019876          256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED  332 (334)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~~~  332 (334)
                                ++..          ++||+|+++..|++|.  +  +|+++..   ...+. .+.+|+.+++.+++...
T Consensus       715 ----------e~Al----------eeGVe~~~~~~p~~I~--~--dG~l~~~---~~~lg~~d~~Gr~~~v~tg~~~~  765 (1019)
T PRK09853        715 ----------EEAL----------EDGVEFKELLNPESFD--A--DGTLTCR---VMKLGEPDESGRRRPVETGETVT  765 (1019)
T ss_pred             ----------HHHH----------HcCCEEEeCCceEEEE--c--CCcEEEE---EEEeecccCCCceEEeeCCCeEE
Confidence                      1111          4589999999999997  5  4654432   22332 24568887777776544

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.95  E-value=5.7e-27  Score=236.65  Aligned_cols=168  Identities=31%  Similarity=0.462  Sum_probs=140.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++|+|||+||||+++|..|++.+  ++|+|||+.+.+||.+++++ |.+..++++.....+.+...|++++.++.++
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~  267 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAPLRAMGAEFRFNTVFG  267 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeecC-CCCCCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence            35689999999999999999999997  99999999999999999987 7777777777777778888999999998876


Q ss_pred             eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHH
Q 019876           97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR  176 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~  176 (334)
                      .+++.++....||+||||||++.+..+++||.+.+++++..+++.......       ....+++|+|||+|++|+|+|.
T Consensus       268 ~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~-------~~~~gk~VvVIGgG~~a~e~A~  340 (652)
T PRK12814        268 RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT-------ALHPGKKVVVIGGGNTAIDAAR  340 (652)
T ss_pred             CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCC-------cccCCCeEEEECCCHHHHHHHH
Confidence            655555555579999999999645678999999999998877775433211       1347899999999999999999


Q ss_pred             HHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .+.+                    .|+++||+++|++.
T Consensus       341 ~l~~--------------------~Ga~~Vtlv~r~~~  358 (652)
T PRK12814        341 TALR--------------------LGAESVTILYRRTR  358 (652)
T ss_pred             HHHH--------------------cCCCeEEEeeecCc
Confidence            9886                    68888999999875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.95  E-value=5.9e-27  Score=237.63  Aligned_cols=160  Identities=21%  Similarity=0.288  Sum_probs=123.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC----------------------------CCccccccccCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP----------------------------TPFGLVRSGVAPD   67 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~----------------------------~~gg~~~~~~~p~   67 (334)
                      +.+.++|+|||+||||++||.+|++.|  ++|+|||+.+                            .+||+..||+ | 
T Consensus       380 ~~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI-p-  455 (1028)
T PRK06567        380 EPTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI-T-  455 (1028)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc-c-
Confidence            357899999999999999999999987  9999999752                            1688999998 4 


Q ss_pred             CcchhHHHHHHHHHhhc-CCcEEEeCeEEceEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcC
Q 019876           68 HPETKIVINQFSRVVQH-ERCSFFGNVTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG  145 (334)
Q Consensus        68 ~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~  145 (334)
                      +..+++..+.....++. .++.++.++.++.+++.++.. ..||+|+||||++.|+.++|||.+.++|+++.+|+...+.
T Consensus       456 ~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~  535 (1028)
T PRK06567        456 VRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQS  535 (1028)
T ss_pred             ccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhh
Confidence            44556555554444443 357788899998888887754 5799999999997799999999999999999998876533


Q ss_pred             CCCC-CCCCCCCCCCCeEEEEcCCHHHHHHHHHHc
Q 019876          146 HPDG-KNLSPDLKSTDTAVILGQGNVALDVARILL  179 (334)
Q Consensus       146 ~~~~-~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~  179 (334)
                      .... .....++..+++|||||||++|+|+|+...
T Consensus       536 ~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAl  570 (1028)
T PRK06567        536 GGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESL  570 (1028)
T ss_pred             cccccccccCcccCCCCEEEEcCcHHHHHHHHHHH
Confidence            2111 011122335789999999999999998444

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.95  E-value=1.3e-27  Score=229.27  Aligned_cols=248  Identities=28%  Similarity=0.413  Sum_probs=195.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ..+.++|+||||||||++||..|.+.+  +.|+++|+.+.+||++.||+ |.+.+.+++.+...++++..|++|+.++.+
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~~GGll~yGI-P~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v  196 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLELLERSGVEFKLNVRV  196 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCCCceeEEecC-chhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence            456699999999999999999999998  99999999999999999998 999999999999999999999999999999


Q ss_pred             ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCC--CCCCCCCCCCCeEEEEcCCHHHHH
Q 019876           96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKSTDTAVILGQGNVALD  173 (334)
Q Consensus        96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~k~vvVIG~G~~g~e  173 (334)
                      +.+++.+++...||++++|||+..|+.+++||.+.++|+.+.+|+...+.....  .........+|+|+|||+|++++|
T Consensus       197 G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D  276 (457)
T COG0493         197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMD  276 (457)
T ss_pred             CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHH
Confidence            999999998889999999999988999999999999999999999765422111  101112235699999999999999


Q ss_pred             HHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhh
Q 019876          174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK  253 (334)
Q Consensus       174 ~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~  253 (334)
                      ++....+                    +|+++|+.+++...-. ...+                    ...++.      
T Consensus       277 ~~~t~~r--------------------~Ga~~v~~~~~~~~~~-~~~~--------------------~~~~~~------  309 (457)
T COG0493         277 CAGTALR--------------------LGAKSVTCFYREDRDD-ETNE--------------------WPTWAA------  309 (457)
T ss_pred             HHHHHhh--------------------cCCeEEEEeccccccc-cCCc--------------------ccccch------
Confidence            9987775                    7999999997543210 0000                    000000      


Q ss_pred             ccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeec--CCCCcceeec-CCce
Q 019876          254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG--GGPGKQYAVG-TGEF  330 (334)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~--~~~~~~~~~~-~~~~  330 (334)
                               ++..+.         ..++|+.+.++..+.+++  ++++|+|+++.+.......  +..||+.|++ .|++
T Consensus       310 ---------~~~~~~---------a~eeg~~~~~~~~~~~~~--~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~  369 (457)
T COG0493         310 ---------QLEVRS---------AGEEGVERLPFVQPKAFI--GNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTE  369 (457)
T ss_pred             ---------hhhhhh---------hhhcCCcccccCCceeEe--ecCCCcEeeeecccccccCcccccccccCccccCce
Confidence                     011111         247789999999999999  6567999999998876653  3467888887 4666


Q ss_pred             EeC
Q 019876          331 EDL  333 (334)
Q Consensus       331 ~~~  333 (334)
                      +.+
T Consensus       370 ~~~  372 (457)
T COG0493         370 KTD  372 (457)
T ss_pred             EEe
Confidence            553

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.95  E-value=1.5e-26  Score=226.38  Aligned_cols=254  Identities=26%  Similarity=0.312  Sum_probs=177.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++|+|||+|++|+++|.+|++.+  ++|+|||+.+.+||++.|++ |.+...+++.....+++++.|++++.++.+.
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g--~~V~v~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~  217 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAG--HTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG  217 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeccC-CCccCCHHHHHHHHHHHHhCCCEEECCCEeC
Confidence            34589999999999999999999987  99999999999999999987 7666666677777778888999999998886


Q ss_pred             eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCC-CC--CCCCCCCCCCCCeEEEEcCCHHHHH
Q 019876           97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGH-PD--GKNLSPDLKSTDTAVILGQGNVALD  173 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~-~~--~~~~~~~~~~~k~vvVIG~G~~g~e  173 (334)
                      .+++.+.....||+||+|||+..|+.+++||.+.+||++..+++...... .+  ...+......+|+|+|||+|++|+|
T Consensus       218 ~~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d  297 (485)
T TIGR01317       218 VDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGAD  297 (485)
T ss_pred             CccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHH
Confidence            55544444468999999999955888999999999999988777543211 11  1011112247899999999999999


Q ss_pred             HHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhh
Q 019876          174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK  253 (334)
Q Consensus       174 ~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~  253 (334)
                      +|..+.+                    .++++|+++++.+..+......                    ..++..     
T Consensus       298 ~a~~a~~--------------------~ga~~V~vv~~~~~~~~~~~~~--------------------~~~~~~-----  332 (485)
T TIGR01317       298 CVGTSLR--------------------HGAASVHQFEIMPKPPEARAKD--------------------NPWPEW-----  332 (485)
T ss_pred             HHHHHHH--------------------cCCCEEEEEEecCCChhhcccc--------------------cCCCcc-----
Confidence            9877765                    6878899998876542111000                    000000     


Q ss_pred             ccHHHHHHHHHHHHHHhccCCCCCCCceEEE-EEeccccceeeccccCCCCeeEEEEEEeeeecCCCCcceeec-CCceE
Q 019876          254 NSRIQRRVYELLSKAAASASSQPMLGQRELH-FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG-TGEFE  331 (334)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~-~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~~~  331 (334)
                       .... +....+++..         ...||. +++++.|++|.  +++++++++|++.+.++..+++|+++|++ .|+.+
T Consensus       333 -~~~~-e~~~a~~e~~---------~~~gv~~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~  399 (485)
T TIGR01317       333 -PRVY-RVDYAHEEAA---------AHYGRDPREYSILTKEFI--GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEE  399 (485)
T ss_pred             -chhh-hhHHHHHhhh---------hhcCccceEEecCcEEEE--EcCCCeEEEEEEEEEEeccCCCCCccceecCCceE
Confidence             0000 0001111211         134664 46789999998  62247999999988776666789877765 44433

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.94  E-value=1.1e-25  Score=219.88  Aligned_cols=231  Identities=28%  Similarity=0.379  Sum_probs=165.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++|+|||+||||+++|..|++.+  ++|+|||+.+.+||.+++++ |.+....++.....+++.+.|++++.++.++
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  217 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERADRIGGLLRYGI-PDFKLEKEVIDRRIELMEAEGIEFRTNVEVG  217 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCceeeecC-CcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence            35689999999999999999999987  99999999999999999987 6666666777777777888999999998886


Q ss_pred             eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCC-CCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876           97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNLSPDLKSTDTAVILGQGNVALDVA  175 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~k~vvVIG~G~~g~e~A  175 (334)
                      .++...+....||+||+|||+..++.+++||.+.+||++..+|+......... .........+++|+|||+|++|+|+|
T Consensus       218 ~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A  297 (471)
T PRK12810        218 KDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV  297 (471)
T ss_pred             CcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence            55444444458999999999965888899999999999988777543211100 00011123689999999999999999


Q ss_pred             HHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhcc
Q 019876          176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS  255 (334)
Q Consensus       176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~  255 (334)
                      ..+.+                    .|+++|+++.+..........                 ..   .++.    +.. 
T Consensus       298 ~~~~~--------------------~ga~~Vt~~~~~~~~~~~~~~-----------------~~---~~~~----~~~-  332 (471)
T PRK12810        298 GTAIR--------------------QGAKSVTQRDIMPMPPSRRNK-----------------NN---PWPY----WPM-  332 (471)
T ss_pred             HHHHH--------------------cCCCeEEEccccCCCcccccc-----------------cc---CCcc----cch-
Confidence            88775                    688789966543321100000                 00   0000    000 


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeee
Q 019876          256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL  314 (334)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~  314 (334)
                             ....+.+         .+.||+|++++.|++|.  + +++++++|++....+
T Consensus       333 -------~~~~~~~---------~~~GV~i~~~~~~~~i~--~-~~g~v~~V~~~~~~~  372 (471)
T PRK12810        333 -------KLEVSNA---------HEEGVEREFNVQTKEFE--G-ENGKVTGVKVVRTEL  372 (471)
T ss_pred             -------HHHHHHH---------HHcCCeEEeccCceEEE--c-cCCEEEEEEEEEEEe
Confidence                   0001111         25699999999999998  6 478999999886554

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.94  E-value=3.9e-25  Score=227.98  Aligned_cols=225  Identities=28%  Similarity=0.401  Sum_probs=163.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      +.++|+||||||||++||.+|++.|  ++|+|||+.+.+||.+.+++ |.+..+.+...+..+++...|++++.+...  
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G--~~VTV~Ek~~~lGG~l~~~I-P~~rlp~e~l~~~ie~l~~~GVe~~~g~~~--  610 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPGGVVKNII-PEFRISAESIQKDIELVKFHGVEFKYGCSP--  610 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CeEEEEecccccCceeeecc-cccCCCHHHHHHHHHHHHhcCcEEEEeccc--
Confidence            4689999999999999999999997  99999999999999998876 777767777776667778889999888532  


Q ss_pred             EEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHH
Q 019876           98 SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR  176 (334)
Q Consensus        98 ~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~  176 (334)
                      ++++.+.. ..||+||||||++.+..++++|.. ++++...+++..+....      .....+++|+|||||++|+|+|+
T Consensus       611 d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~avefL~~~~~~~------~~~~~GK~VVVIGGGnvAmD~Ar  683 (1012)
T TIGR03315       611 DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLKSLEFLRAFKEGP------TINPLGKHVVVVGGGNTAMDAAR  683 (1012)
T ss_pred             ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceeeHHHHHHHhhccc------cccccCCeEEEECCCHHHHHHHH
Confidence            23344443 369999999999667777888864 57887777776554321      11236899999999999999999


Q ss_pred             HHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccH
Q 019876          177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR  256 (334)
Q Consensus       177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~  256 (334)
                      .+.+                   ..|+++|++++|++....+...+++                                
T Consensus       684 ~a~R-------------------l~Ga~kVtLVyRr~~~~Mpa~~eEl--------------------------------  712 (1012)
T TIGR03315       684 AALR-------------------VPGVEKVTVVYRRTKRYMPASREEL--------------------------------  712 (1012)
T ss_pred             HHHH-------------------hCCCceEEEEEccCccccccCHHHH--------------------------------
Confidence            8875                   1377789999998743211111111                                


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeecCCceEe
Q 019876          257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED  332 (334)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~~~  332 (334)
                               .+.+          ++||+|+++..|++|.  +   ++++   +....+. .+.+|+..++.+|+...
T Consensus       713 ---------~~al----------eeGVe~~~~~~p~~I~--~---g~l~---v~~~~l~~~d~sGr~~~v~~Gee~~  762 (1012)
T TIGR03315       713 ---------EEAL----------EDGVDFKELLSPESFE--D---GTLT---CEVMKLGEPDASGRRRPVGTGETVD  762 (1012)
T ss_pred             ---------HHHH----------HcCCEEEeCCceEEEE--C---CeEE---EEEEEeecccCCCceeeecCCCeEE
Confidence                     1111          4589999999999987  3   3443   3332333 24568877777777554

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.93  E-value=9e-25  Score=219.74  Aligned_cols=236  Identities=24%  Similarity=0.298  Sum_probs=169.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++|+|||+|+||+++|..|++.+  ++|+|||+.+.+||.+.+++ |.+..++++.....++++..|++++.++.++
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~~~gG~~~~~i-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  357 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLSKPGGVMRYGI-PSYRLPDEALDKDIAFIEALGVKIHLNTRVG  357 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceEeecC-CcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence            46789999999999999999999997  99999999999999998887 6666666777776778888999999998886


Q ss_pred             eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHH
Q 019876           97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR  176 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~  176 (334)
                      .++..+.....||+||+|||+..|+.+++||.+.+++++..+++.........  .......+++|+|||||++|+|+|.
T Consensus       358 ~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~--~~~~~~~~k~VvVIGGG~~g~e~A~  435 (604)
T PRK13984        358 KDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRG--EGPKPKIPRSLVVIGGGNVAMDIAR  435 (604)
T ss_pred             CcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhcc--CCCcCCCCCcEEEECCchHHHHHHH
Confidence            65555555568999999999965788999999889999888877644322110  0001124799999999999999999


Q ss_pred             HHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccH
Q 019876          177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR  256 (334)
Q Consensus       177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~  256 (334)
                      .|++....               ..+..+|+++..+...                           ..++....+     
T Consensus       436 ~l~r~~~~---------------~~g~~~V~v~~~~r~~---------------------------~~~~~~~~e-----  468 (604)
T PRK13984        436 SMARLQKM---------------EYGEVNVKVTSLERTF---------------------------EEMPADMEE-----  468 (604)
T ss_pred             HHHhcccc---------------ccCceEEEEeccccCc---------------------------ccCCCCHHH-----
Confidence            99861100               0134568887432111                           001111111     


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeecCCCCcceee
Q 019876          257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV  325 (334)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~  325 (334)
                              +.+.          .+.||+|+++..|++|.  + +++++++|++.+.....+.+|+..+.
T Consensus       469 --------~~~~----------~~~GV~i~~~~~~~~i~--~-~~g~v~~v~~~~~~~~~~~~G~~~~~  516 (604)
T PRK13984        469 --------IEEG----------LEEGVVIYPGWGPMEVV--I-ENDKVKGVKFKKCVEVFDEEGRFNPK  516 (604)
T ss_pred             --------HHHH----------HHcCCEEEeCCCCEEEE--c-cCCEEEEEEEEEEeeccCCCCCccce
Confidence                    1111          14599999999999997  5 47899999987653333455765443

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.93  E-value=3.4e-24  Score=202.06  Aligned_cols=222  Identities=28%  Similarity=0.392  Sum_probs=151.5

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      +..+++|+|||+|++|+++|..|++.+  .+|++||+.+.+||.+.++. +.+....+......+.+.+.+++++.++.+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v   91 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLG--YEVHVYDKLPEPGGLMLFGI-PEFRIPIERVREGVKELEEAGVVFHTRTKV   91 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeeecC-cccccCHHHHHHHHHHHHhCCeEEecCcEE
Confidence            345689999999999999999999987  99999999999998876654 322222222333333445558999888766


Q ss_pred             ceE---------------EecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCC-CCCC-CCCCC
Q 019876           96 GSS---------------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNLS-PDLKS  158 (334)
Q Consensus        96 ~~~---------------v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~-~~~~-~~~~~  158 (334)
                      ...               +..++....||+||||||++.|+.|++||.+.+++++..++...+...... .... .....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (352)
T PRK12770         92 CCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVE  171 (352)
T ss_pred             eeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccC
Confidence            211               111122357999999999944778899998888998877665543322111 0000 00124


Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR  238 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~  238 (334)
                      +++|+|||+|++|+|+|..|..                    .+.++|+++.|++....+....                
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~--------------------~g~~~Vtvi~~~~~~~~~~~~~----------------  215 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVL--------------------LGAEKVYLAYRRTINEAPAGKY----------------  215 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEEeecchhhCCCCHH----------------
Confidence            7899999999999999999875                    5776799999876432111100                


Q ss_pred             cCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee
Q 019876          239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK  315 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~  315 (334)
                                               .+ +.+         ..+||++++++++++|.  +  +++++.|++....+.
T Consensus       216 -------------------------~~-~~l---------~~~gi~i~~~~~v~~i~--~--~~~~~~v~~~~~~~~  253 (352)
T PRK12770        216 -------------------------EI-ERL---------IARGVEFLELVTPVRII--G--EGRVEGVELAKMRLG  253 (352)
T ss_pred             -------------------------HH-HHH---------HHcCCEEeeccCceeee--c--CCcEeEEEEEEEEec
Confidence                                     01 111         25689999999999998  6  467888888765543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.92  E-value=1.8e-23  Score=208.53  Aligned_cols=232  Identities=25%  Similarity=0.342  Sum_probs=172.4

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ....++|+|||+||+|+++|..|++.|  ++|+|||+.+.+||++++++ |.+..++++.....+.+.+.|++++.+..+
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~  210 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQRILDLGVEVRLGVRV  210 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            346789999999999999999999997  89999999999999999987 777777777776667777899999988877


Q ss_pred             ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876           96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA  175 (334)
Q Consensus        96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A  175 (334)
                      +.++........||+||+|||+..+..+.++|.+..|++....++.......       ....+++|+|||+|++|+|++
T Consensus       211 ~~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~-------~~~~gk~v~ViGgg~~a~d~a  283 (564)
T PRK12771        211 GEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE-------PPFLGKRVVVIGGGNTAMDAA  283 (564)
T ss_pred             CCcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC-------CcCCCCCEEEECChHHHHHHH
Confidence            4444343334479999999999656677899988888888777765332211       123689999999999999999


Q ss_pred             HHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhcc
Q 019876          176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS  255 (334)
Q Consensus       176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~  255 (334)
                      ..+.+                    .++++|++++|++....+....+                                
T Consensus       284 ~~a~~--------------------lga~~v~ii~r~~~~~~~~~~~~--------------------------------  311 (564)
T PRK12771        284 RTARR--------------------LGAEEVTIVYRRTREDMPAHDEE--------------------------------  311 (564)
T ss_pred             HHHHH--------------------cCCCEEEEEEecCcccCCCCHHH--------------------------------
Confidence            98775                    67778999999864321111111                                


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeecCCceEe
Q 019876          256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED  332 (334)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~~~  332 (334)
                               +.+.          .+.||+|++++.|++|.  + +++++.+|++...++. .+.+|++.|+ +|+.+.
T Consensus       312 ---------~~~a----------~~~GVki~~~~~~~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~-~g~~~~  366 (564)
T PRK12771        312 ---------IEEA----------LREGVEINWLRTPVEIE--G-DENGATGLRVITVEKMELDEDGRPSPV-TGEEET  366 (564)
T ss_pred             ---------HHHH----------HHcCCEEEecCCcEEEE--c-CCCCEEEEEEEEEEecccCCCCCeeec-CCceEE
Confidence                     1111          14689999999999998  5 3445558887765543 3557887776 555444

>PRK06370 mercuric reductase; Validated

Probab=99.90  E-value=1.6e-22  Score=197.34  Aligned_cols=165  Identities=19%  Similarity=0.226  Sum_probs=121.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCc---------------------------c
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP---------------------------E   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~---------------------------~   70 (334)
                      ..++|+|||+||||++||..|++.|  .+|+|||+....|++++.||.|.+.                           .
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLG--MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD   81 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence            4589999999999999999999997  9999999975555556667766421                           1


Q ss_pred             hhHHH-----------HHHHHHhhcC-CcEEEeCeEE---ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccc
Q 019876           71 TKIVI-----------NQFSRVVQHE-RCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS  135 (334)
Q Consensus        71 ~~~~~-----------~~~~~~~~~~-~i~~~~~~~v---~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~  135 (334)
                      ...+.           ..+..++++. +++++.++.+   .+.+.+++..+.||+||||||+ .|+.|++||.+..++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs-~p~~p~i~G~~~~~~~~  160 (463)
T PRK06370         82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGA-RAAIPPIPGLDEVGYLT  160 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCC-CCCCCCCCCCCcCceEc
Confidence            11111           2233455665 8999887653   2344454445789999999999 59999999987767766


Q ss_pred             hhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..++..    .         ...+++|+|||+|++|+|+|..|++                    .|. +|+++++.+.+
T Consensus       161 ~~~~~~----~---------~~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G~-~Vtli~~~~~~  206 (463)
T PRK06370        161 NETIFS----L---------DELPEHLVIIGGGYIGLEFAQMFRR--------------------FGS-EVTVIERGPRL  206 (463)
T ss_pred             chHhhC----c---------cccCCEEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEEcCCCC
Confidence            544331    1         0146899999999999999999986                    565 69999999877


Q ss_pred             ccCC
Q 019876          216 QAAC  219 (334)
Q Consensus       216 ~~~~  219 (334)
                      +..+
T Consensus       207 l~~~  210 (463)
T PRK06370        207 LPRE  210 (463)
T ss_pred             Cccc
Confidence            5443

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.6e-22  Score=185.39  Aligned_cols=200  Identities=25%  Similarity=0.329  Sum_probs=144.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCCcccccc----ccCCCCc---chhHHHHHHHHHhhcCCcEE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRS----GVAPDHP---ETKIVINQFSRVVQHERCSF   89 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~gg~~~~----~~~p~~~---~~~~~~~~~~~~~~~~~i~~   89 (334)
                      ..++|+|||||||||+||.++.+.+  .+ ++|+++ ..+||.+..    .-+|+++   ...++...+.++....++++
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~--l~~~li~~~-~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~   78 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEG-GEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEI   78 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcC--CCcEEEEec-CCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEE
Confidence            4579999999999999999999997  88 555555 456655432    1124443   34578888999988899988


Q ss_pred             EeCeEEc-------eEEecccceeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCCC
Q 019876           90 FGNVTLG-------SSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKST  159 (334)
Q Consensus        90 ~~~~~v~-------~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (334)
                      .......       ..+.+++..+.+++||||||+ .++.|.+||..   ..+|+++        ..||.      ++++
T Consensus        79 ~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~-~~~~~~~~~e~e~~g~gv~yc--------~~cdg------~~~~  143 (305)
T COG0492          79 VEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGA-GARKLGVPGEEEFEGKGVSYC--------ATCDG------FFKG  143 (305)
T ss_pred             EEEEEEEEeecCceEEEEECCCeEEEeEEEECcCC-cccCCCCCcchhhcCCceEEe--------eecCc------cccC
Confidence            7643321       134455566789999999999 58888888754   2344443        23332      4588


Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE  239 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~  239 (334)
                      |+|+|||||++|+|.|.+|++                     -+++||+++|++.+.+   .                  
T Consensus       144 k~v~ViGgG~sAve~Al~L~~---------------------~a~~Vtlv~r~~~~ra---~------------------  181 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSK---------------------IAKKVTLVHRRDEFRA---E------------------  181 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHH---------------------hcCeEEEEecCcccCc---C------------------
Confidence            999999999999999999996                     5567999999987631   0                  


Q ss_pred             CccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEee
Q 019876          240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA  313 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~  313 (334)
                                             +.+++.+.        ...+|++++++.+++|.  |  ++ +++|+++++.
T Consensus       182 -----------------------~~~~~~l~--------~~~~i~~~~~~~i~ei~--G--~~-v~~v~l~~~~  219 (305)
T COG0492         182 -----------------------EILVERLK--------KNVKIEVLTNTVVKEIL--G--DD-VEGVVLKNVK  219 (305)
T ss_pred             -----------------------HHHHHHHH--------hcCCeEEEeCCceeEEe--c--Cc-cceEEEEecC
Confidence                                   12223322        13379999999999999  7  45 9999998753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.90  E-value=3.2e-22  Score=194.45  Aligned_cols=163  Identities=18%  Similarity=0.245  Sum_probs=115.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCCcc---------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPE---------------------------   70 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~~~---------------------------   70 (334)
                      .++|+||||||||++||..+++.|  .+|+|||+.. +||. ++.||.|.+.+                           
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHG--AKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN   78 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence            579999999999999999999997  9999999964 6664 45577776411                           


Q ss_pred             hhH-----------HHHHHHHHhhcCCcEEEeCeEE---ceEEecccceeccCeEEEeccCCCCCCC-CCCCccCCCccc
Q 019876           71 TKI-----------VINQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRAL-GIPGEDLIGVHS  135 (334)
Q Consensus        71 ~~~-----------~~~~~~~~~~~~~i~~~~~~~v---~~~v~~~~~~~~yd~lIlATGs~~p~~~-~ipG~~~~~v~~  135 (334)
                      ...           +...+...++..+++++.++..   ...+.++...+.||+||||||+ .|+.| ++||.+.  ..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs-~p~~p~~i~g~~~--~~~  155 (450)
T TIGR01421        79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGG-KPSFPENIPGAEL--GTD  155 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCCCce--eEc
Confidence            111           1112334556678999887653   2234444345789999999999 58888 8898652  122


Q ss_pred             hhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..++.    ...         ..+++++|||||++|+|+|..|++                    .|. +||+++|++.+
T Consensus       156 ~~~~~----~~~---------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g~-~Vtli~~~~~i  201 (450)
T TIGR01421       156 SDGFF----ALE---------ELPKRVVIVGAGYIAVELAGVLHG--------------------LGS-ETHLVIRHERV  201 (450)
T ss_pred             HHHhh----Ccc---------ccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecCCCC
Confidence            22221    110         136899999999999999999986                    565 69999999887


Q ss_pred             ccCCCH
Q 019876          216 QAACTA  221 (334)
Q Consensus       216 ~~~~~~  221 (334)
                      +..+++
T Consensus       202 l~~~d~  207 (450)
T TIGR01421       202 LRSFDS  207 (450)
T ss_pred             CcccCH
Confidence            755543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.90  E-value=5.1e-22  Score=192.57  Aligned_cols=164  Identities=18%  Similarity=0.229  Sum_probs=119.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC-Cccc-cccccCCCCcc---------hhHHH-----------H
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGL-VRSGVAPDHPE---------TKIVI-----------N   76 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~-~gg~-~~~~~~p~~~~---------~~~~~-----------~   76 (334)
                      .++|+||||||||++||..|++.+  .+|+|||+.+. +||. ++.+|.|.+..         ..++.           .
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g--~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAG--KKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG   80 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCC--CEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999987  99999999864 4765 45677786642         12221           1


Q ss_pred             HHHHHhhcCCcEEEeCeEE---ceEEecc--c--ceeccCeEEEeccCCCCCCCCCCCcc-CCCccchhhHHHHhcCCCC
Q 019876           77 QFSRVVQHERCSFFGNVTL---GSSVSLS--E--LRQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHPD  148 (334)
Q Consensus        77 ~~~~~~~~~~i~~~~~~~v---~~~v~~~--~--~~~~yd~lIlATGs~~p~~~~ipG~~-~~~v~~~~~~~~~~~~~~~  148 (334)
                      ...+.+.+.+++++.+...   .+.+.+.  +  ..+.||+||||||+ .|+.|++||.+ .++++++.++..    .  
T Consensus        81 ~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs-~~~~p~i~G~~~~~~v~~~~~~~~----~--  153 (438)
T PRK07251         81 KNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGA-VSNVLPIPGLADSKHVYDSTGIQS----L--  153 (438)
T ss_pred             HHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCC-CCCCCCCCCcCCCCcEEchHHHhc----c--
Confidence            1234566778998876542   2233332  1  24689999999999 58889999974 566776654432    1  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCC
Q 019876          149 GKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC  219 (334)
Q Consensus       149 ~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~  219 (334)
                             ...+++|+|||+|++|+|+|..|++                    .|. +|++++|.+.++..+
T Consensus       154 -------~~~~~~vvIIGgG~~g~e~A~~l~~--------------------~g~-~Vtli~~~~~~l~~~  196 (438)
T PRK07251        154 -------ETLPERLGIIGGGNIGLEFAGLYNK--------------------LGS-KVTVLDAASTILPRE  196 (438)
T ss_pred             -------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEecCCccCCCC
Confidence                   1146899999999999999999986                    565 699999998776544

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.89  E-value=3.6e-22  Score=191.68  Aligned_cols=167  Identities=17%  Similarity=0.289  Sum_probs=124.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc-ccccccCCCCcchhH-----------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPETKI-----------------------   73 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg-~~~~~~~p~~~~~~~-----------------------   73 (334)
                      ..++++|||+||||..||..+++.+  .++.++|+.+..|| |+++||.|.+.+...                       
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G--~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i   80 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLG--LKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI   80 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCC--CCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence            4689999999999999999999998  66999999965555 556688887543220                       


Q ss_pred             ----HH-----------HHHHHHhhcCCcEEEeCeEE---ceEEeccc---ceeccCeEEEeccCCCCCCCCCCCccCCC
Q 019876           74 ----VI-----------NQFSRVVQHERCSFFGNVTL---GSSVSLSE---LRQLYHVVVLAYGAESDRALGIPGEDLIG  132 (334)
Q Consensus        74 ----~~-----------~~~~~~~~~~~i~~~~~~~v---~~~v~~~~---~~~~yd~lIlATGs~~p~~~~ipG~~~~~  132 (334)
                          +.           .....+++..+|+++.+...   ..++.+..   ....++++|||||| +|+.|+++|.+...
T Consensus        81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS-~p~~~~~~~~~~~~  159 (454)
T COG1249          81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGS-RPRIPPGPGIDGAR  159 (454)
T ss_pred             CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC-CCcCCCCCCCCCCe
Confidence                11           11233445557887766542   23455544   45689999999999 69999999988766


Q ss_pred             ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      +++..+.+..             ..-+++++|||||.+|+|+|..+++                    +|++ |||++|+
T Consensus       160 ~~~s~~~l~~-------------~~lP~~lvIiGgG~IGlE~a~~~~~--------------------LG~~-VTiie~~  205 (454)
T COG1249         160 ILDSSDALFL-------------LELPKSLVIVGGGYIGLEFASVFAA--------------------LGSK-VTVVERG  205 (454)
T ss_pred             EEechhhccc-------------ccCCCEEEEECCCHHHHHHHHHHHH--------------------cCCc-EEEEecC
Confidence            7666543321             1257999999999999999999997                    8985 9999999


Q ss_pred             CccccCCCH
Q 019876          213 GPVQAACTA  221 (334)
Q Consensus       213 ~~~~~~~~~  221 (334)
                      +++++.+++
T Consensus       206 ~~iLp~~D~  214 (454)
T COG1249         206 DRILPGEDP  214 (454)
T ss_pred             CCCCCcCCH
Confidence            999866554

>TIGR02053 MerA mercuric reductase

Probab=99.89  E-value=9.2e-22  Score=192.11  Aligned_cols=164  Identities=19%  Similarity=0.256  Sum_probs=118.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcch-------------------------h--
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET-------------------------K--   72 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~-------------------------~--   72 (334)
                      ++|+||||||||++||..+++.+  .+|+|||+.+..|.++++||.|.+.+.                         .  
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   78 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELG--ASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL   78 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence            48999999999999999999997  999999998644445566776743211                         0  


Q ss_pred             -----HHHHH-----HHHHhhcCCcEEEeCeEE---ceEEecccc--eeccCeEEEeccCCCCCCCCCCCccCCCccchh
Q 019876           73 -----IVINQ-----FSRVVQHERCSFFGNVTL---GSSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR  137 (334)
Q Consensus        73 -----~~~~~-----~~~~~~~~~i~~~~~~~v---~~~v~~~~~--~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~  137 (334)
                           ++...     +..++++.+++++.+...   ...+.+.++  ...||+||||||+ .|+.|++||.+..++++..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs-~p~~p~i~G~~~~~~~~~~  157 (463)
T TIGR02053        79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGA-RPAIPPIPGLKEAGYLTSE  157 (463)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCC-CCCCCCCCCcccCceECch
Confidence                 11111     234566778998877653   234555442  3589999999999 5899999998766666554


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876          138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                      +++.    .         -..+++++|||+|.+|+|+|..|++                    .|. +||++++.+.++.
T Consensus       158 ~~~~----~---------~~~~~~vvIIGgG~~g~E~A~~l~~--------------------~g~-~Vtli~~~~~~l~  203 (463)
T TIGR02053       158 EALA----L---------DRIPESLAVIGGGAIGVELAQAFAR--------------------LGS-EVTILQRSDRLLP  203 (463)
T ss_pred             hhhC----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEEcCCcCCC
Confidence            4321    0         0135899999999999999999986                    565 6999999987765


Q ss_pred             CCC
Q 019876          218 ACT  220 (334)
Q Consensus       218 ~~~  220 (334)
                      .++
T Consensus       204 ~~d  206 (463)
T TIGR02053       204 REE  206 (463)
T ss_pred             ccC
Confidence            443

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.89  E-value=3.7e-22  Score=199.04  Aligned_cols=163  Identities=31%  Similarity=0.457  Sum_probs=140.6

Q ss_pred             cccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEe
Q 019876           12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFG   91 (334)
Q Consensus        12 ~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~   91 (334)
                      ..+...+.++|+|||+||||++||..|-+.|  ..|+|+|+.+.+||++.||+ |...+.+.+.++-.+++...||+|.+
T Consensus      1778 ~pp~~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygi-pnmkldk~vv~rrv~ll~~egi~f~t 1854 (2142)
T KOG0399|consen 1778 CPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGI-PNMKLDKFVVQRRVDLLEQEGIRFVT 1854 (2142)
T ss_pred             CCcccccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecC-CccchhHHHHHHHHHHHHhhCceEEe
Confidence            4555567899999999999999999999997  99999999999999999999 88878888888888999999999999


Q ss_pred             CeEEceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhc-----CCCCCCCCCCCCCCCCeEEEEc
Q 019876           92 NVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN-----GHPDGKNLSPDLKSTDTAVILG  166 (334)
Q Consensus        92 ~~~v~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~vvVIG  166 (334)
                      |+.+++++.++.+..++|++|+|+||..|+.+|+||.+.+||+.+.+|+..-.     ...|...   .-.++|+|+|||
T Consensus      1855 n~eigk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~---~~~~gkkvivig 1931 (2142)
T KOG0399|consen 1855 NTEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNY---ISAKGKKVIVIG 1931 (2142)
T ss_pred             eccccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccce---eccCCCeEEEEC
Confidence            99999999998888899999999999889999999999999998888875421     1111111   113799999999


Q ss_pred             CCHHHHHHHHHHcc
Q 019876          167 QGNVALDVARILLR  180 (334)
Q Consensus       167 ~G~~g~e~A~~L~~  180 (334)
                      ||.+|-|+...-.+
T Consensus      1932 ggdtg~dcigtsvr 1945 (2142)
T KOG0399|consen 1932 GGDTGTDCIGTSVR 1945 (2142)
T ss_pred             CCCccccccccchh
Confidence            99999999876665

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.88  E-value=1.8e-21  Score=190.02  Aligned_cols=168  Identities=18%  Similarity=0.181  Sum_probs=120.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCcch------------------------
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHPET------------------------   71 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~~~------------------------   71 (334)
                      +..++|+||||||||++||.+|.+.+  .+|+|||+.+.+||.+. .++.|.+...                        
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRI   80 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCcc
Confidence            34589999999999999999999997  99999999777777664 4666643211                        


Q ss_pred             --hHHH-----------HHHHHHhhcCCcEEEeCeEE--c-e--EEecccc---eeccCeEEEeccCCCCCCCCCCCccC
Q 019876           72 --KIVI-----------NQFSRVVQHERCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL  130 (334)
Q Consensus        72 --~~~~-----------~~~~~~~~~~~i~~~~~~~v--~-~--~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~~  130 (334)
                        .++.           ..+..++.+.+++++.+...  + .  .+...++   .+.||+||||||+ .|..|++++.+.
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs-~p~~p~~~~~~~  159 (461)
T PRK05249         81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGS-RPYRPPDVDFDH  159 (461)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCCCC
Confidence              1111           12234456678888877542  1 1  2322232   4689999999999 588888887766


Q ss_pred             CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEe
Q 019876          131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG  210 (334)
Q Consensus       131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~  210 (334)
                      +++++..++...             ...+++++|||+|++|+|+|..|++                    .|. +||+++
T Consensus       160 ~~v~~~~~~~~~-------------~~~~~~v~IiGgG~~g~E~A~~l~~--------------------~g~-~Vtli~  205 (461)
T PRK05249        160 PRIYDSDSILSL-------------DHLPRSLIIYGAGVIGCEYASIFAA--------------------LGV-KVTLIN  205 (461)
T ss_pred             CeEEcHHHhhch-------------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEe
Confidence            677766544321             0146899999999999999999996                    565 699999


Q ss_pred             ecCccccCCCH
Q 019876          211 RRGPVQAACTA  221 (334)
Q Consensus       211 r~~~~~~~~~~  221 (334)
                      +++.++..+++
T Consensus       206 ~~~~~l~~~d~  216 (461)
T PRK05249        206 TRDRLLSFLDD  216 (461)
T ss_pred             cCCCcCCcCCH
Confidence            99887655443

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.88  E-value=1.5e-21  Score=189.68  Aligned_cols=169  Identities=14%  Similarity=0.173  Sum_probs=115.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc----cccccccCCC-CcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----GLVRSGVAPD-HPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g----g~~~~~~~p~-~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      |+|||||||+||++||..|++.+++.+|+|||+++..+    +...+ . ++ +....++..+..+.+++.+++++.+..
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   78 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYF-V-GGFFDDPNTMIARTPEEFIKSGIDVKTEHE   78 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceE-e-ccccCCHHHhhcCCHHHHHHCCCeEEecCE
Confidence            58999999999999999999987778999999987642    11111 1 11 122333444445566777999887654


Q ss_pred             Ec------eEEeccc----ceec--cCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeE
Q 019876           95 LG------SSVSLSE----LRQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA  162 (334)
Q Consensus        95 v~------~~v~~~~----~~~~--yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~v  162 (334)
                      +.      ..+.+.+    ....  ||+||||||+ .|..|++||.+.+++++...+..... ..+.  + . -..+++|
T Consensus        79 V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~g~~~~~v~~~~~~~~~~~-l~~~--l-~-~~~~~~v  152 (444)
T PRK09564         79 VVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA-RPIIPPIKNINLENVYTLKSMEDGLA-LKEL--L-K-DEEIKNI  152 (444)
T ss_pred             EEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHH-HHHH--H-h-hcCCCEE
Confidence            42      2333322    2334  9999999999 58888999987777876554432111 0000  0 0 0146899


Q ss_pred             EEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876          163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       163 vVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                      +|||+|++|+|+|..|.+                    .|. +|+++.+.+.++.
T Consensus       153 vVvGgG~~g~e~A~~l~~--------------------~g~-~Vtli~~~~~~l~  186 (444)
T PRK09564        153 VIIGAGFIGLEAVEAAKH--------------------LGK-NVRIIQLEDRILP  186 (444)
T ss_pred             EEECCCHHHHHHHHHHHh--------------------cCC-cEEEEeCCcccCc
Confidence            999999999999999885                    564 6999999887653

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.88  E-value=3.6e-21  Score=186.83  Aligned_cols=165  Identities=18%  Similarity=0.167  Sum_probs=116.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC-Ccccc-ccccCCCCcchh----------------HHHHHH--
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLV-RSGVAPDHPETK----------------IVINQF--   78 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~-~gg~~-~~~~~p~~~~~~----------------~~~~~~--   78 (334)
                      .++|+||||||||++||.+|++.+  .+|+|||+.+. .||.+ +.+|.|.+.+..                .+..++  
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRN   80 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999987  99999999754 57765 457777643211                111111  


Q ss_pred             ---HHHhhcCCcEEEeCeEE--c---eEEecccc--eeccCeEEEeccCCCCCCCCCCCcc-CCCccchhhHHHHhcCCC
Q 019876           79 ---SRVVQHERCSFFGNVTL--G---SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHP  147 (334)
Q Consensus        79 ---~~~~~~~~i~~~~~~~v--~---~~v~~~~~--~~~yd~lIlATGs~~p~~~~ipG~~-~~~v~~~~~~~~~~~~~~  147 (334)
                         .++.+..+++++.+...  +   ..+...++  .+.||+||||||+ .|..|++||.+ .++++++.++..    . 
T Consensus        81 ~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs-~p~~p~i~G~~~~~~v~~~~~~~~----~-  154 (441)
T PRK08010         81 KNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGA-QTVVPPIPGITTTPGVYDSTGLLN----L-  154 (441)
T ss_pred             hHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCC-cCCCCCCCCccCCCCEEChhHhhc----c-
Confidence               12233348888766532  1   12333333  4689999999999 58889999975 467776544331    1 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCC
Q 019876          148 DGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT  220 (334)
Q Consensus       148 ~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~  220 (334)
                              ...+++++|||+|.+|+|+|..|.+                    .|. +||+++|.+.+++.++
T Consensus       155 --------~~~~~~v~ViGgG~~g~E~A~~l~~--------------------~g~-~Vtli~~~~~~l~~~~  198 (441)
T PRK08010        155 --------KELPGHLGILGGGYIGVEFASMFAN--------------------FGS-KVTILEAASLFLPRED  198 (441)
T ss_pred             --------cccCCeEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCCCCCCcC
Confidence                    0146799999999999999999986                    565 6999999887765543

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.88  E-value=3.4e-21  Score=187.13  Aligned_cols=162  Identities=19%  Similarity=0.292  Sum_probs=114.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcch--------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPET--------------------------   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~~--------------------------   71 (334)
                      .++|+||||||||++||..+++.|  .+|+|+|+. .+||.+ +.||.|.+.+.                          
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHG--AKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW   78 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCC--CcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence            479999999999999999999997  999999985 567765 44777775210                          


Q ss_pred             -----------hHHHHHHHHHhhcCCcEEEeCeEE--c-eEEec--ccceeccCeEEEeccCCCCCCCCCCCccCCCccc
Q 019876           72 -----------KIVINQFSRVVQHERCSFFGNVTL--G-SSVSL--SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS  135 (334)
Q Consensus        72 -----------~~~~~~~~~~~~~~~i~~~~~~~v--~-~~v~~--~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~  135 (334)
                                 ..+...+...+++.+++++.+...  + ..+.+  ....+.||+||||||+ .|..|++||.+.  ..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs-~p~~p~i~G~~~--~~~  155 (446)
T TIGR01424        79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGG-RPQKPNLPGHEL--GIT  155 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCC-cCCCCCCCCccc--eec
Confidence                       012233445566778998877542  2 12222  2234689999999999 588889998642  222


Q ss_pred             hhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..+..    ...         ..+++++|||+|++|+|+|..|++                    .|. +|+++++.+.+
T Consensus       156 ~~~~~----~l~---------~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G~-~Vtli~~~~~~  201 (446)
T TIGR01424       156 SNEAF----HLP---------TLPKSILILGGGYIAVEFAGIWRG--------------------LGV-QVTLIYRGELI  201 (446)
T ss_pred             hHHhh----ccc---------ccCCeEEEECCcHHHHHHHHHHHH--------------------cCC-eEEEEEeCCCC
Confidence            22221    110         146899999999999999999986                    565 69999998877


Q ss_pred             ccCCC
Q 019876          216 QAACT  220 (334)
Q Consensus       216 ~~~~~  220 (334)
                      +..++
T Consensus       202 l~~~d  206 (446)
T TIGR01424       202 LRGFD  206 (446)
T ss_pred             CcccC
Confidence            65443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.88  E-value=1.2e-21  Score=186.41  Aligned_cols=168  Identities=18%  Similarity=0.217  Sum_probs=116.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-ccccc-cccCCCCcchhHHHH-HHHHHhhcCCcEEEeCeEEc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVR-SGVAPDHPETKIVIN-QFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-gg~~~-~~~~p~~~~~~~~~~-~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ++|||||||+||+.+|..|++.+++.+|+||++++.. +.... ...+.+.....++.. ...+++++.+++++.+..+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            5899999999999999999998888999999987642 22111 111122223344443 24566677899998876542


Q ss_pred             ------eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHH
Q 019876           97 ------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNV  170 (334)
Q Consensus        97 ------~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~  170 (334)
                            +.+..++..+.||+||||||+ .|..|++||.+.  +++...+... ...      ...+..+++|+|||+|++
T Consensus        83 ~id~~~~~v~~~~~~~~yd~LVlATG~-~~~~p~i~G~~~--v~~~~~~~~~-~~~------~~~~~~~~~vvViGgG~~  152 (377)
T PRK04965         83 DIDAEAQVVKSQGNQWQYDKLVLATGA-SAFVPPIPGREL--MLTLNSQQEY-RAA------ETQLRDAQRVLVVGGGLI  152 (377)
T ss_pred             EEECCCCEEEECCeEEeCCEEEECCCC-CCCCCCCCCCce--EEEECCHHHH-HHH------HHHhhcCCeEEEECCCHH
Confidence                  224444445789999999999 588889999754  4443332211 100      011235789999999999


Q ss_pred             HHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC
Q 019876          171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA  218 (334)
Q Consensus       171 g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~  218 (334)
                      |+|+|..|.+                    .+. +|+++++.+.++..
T Consensus       153 g~e~A~~L~~--------------------~g~-~Vtlv~~~~~~l~~  179 (377)
T PRK04965        153 GTELAMDLCR--------------------AGK-AVTLVDNAASLLAS  179 (377)
T ss_pred             HHHHHHHHHh--------------------cCC-eEEEEecCCcccch
Confidence            9999999986                    454 69999998876543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.88  E-value=4.7e-22  Score=204.64  Aligned_cols=212  Identities=19%  Similarity=0.232  Sum_probs=146.6

Q ss_pred             EEEECCchHHHHHHHHHhhcC-CCCeEEEEcCCCCCc-cccc-cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876           22 VCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPF-GLVR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--   96 (334)
Q Consensus        22 vvIIGaG~aGl~aA~~l~~~~-~~~~v~vie~~~~~g-g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--   96 (334)
                      |||||+|+||+++|..|++.. ++++|+||++++.++ ..+. ..+..+....+++.....+++++.+++++.++.+.  
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            689999999999999998875 468999999998753 2111 11223333344554455667788899999886542  


Q ss_pred             ----eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHH
Q 019876           97 ----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVA  171 (334)
Q Consensus        97 ----~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g  171 (334)
                          +.+.+.++ .+.||+||||||+ .|+.|++||.+.++++..+++... ...      ......+++++|||||++|
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATGs-~p~~p~ipG~~~~~v~~~rt~~d~-~~i------~~~~~~~k~vvVVGgG~~G  152 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATGS-YPFILPIPGADKKGVYVFRTIEDL-DAI------MAMAQRFKKAAVIGGGLLG  152 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCCC-CcCCCCCCCCCCCCEEEeCCHHHH-HHH------HHHhhcCCeEEEECCCHHH
Confidence                23444444 4689999999999 599999999988888876543211 100      0112357899999999999


Q ss_pred             HHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhh
Q 019876          172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE  251 (334)
Q Consensus       172 ~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~  251 (334)
                      +|+|..|++                    .|. +|+++++.+.++....++.+                           
T Consensus       153 lE~A~~L~~--------------------~G~-~Vtvv~~~~~ll~~~ld~~~---------------------------  184 (785)
T TIGR02374       153 LEAAVGLQN--------------------LGM-DVSVIHHAPGLMAKQLDQTA---------------------------  184 (785)
T ss_pred             HHHHHHHHh--------------------cCC-eEEEEccCCchhhhhcCHHH---------------------------
Confidence            999999996                    565 69999998876432222111                           


Q ss_pred             hhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                                .+.+++.+         .+.||++++++.+++|.  +  ++++.+|.+.++
T Consensus       185 ----------~~~l~~~l---------~~~GV~v~~~~~v~~i~--~--~~~~~~v~~~dG  222 (785)
T TIGR02374       185 ----------GRLLQREL---------EQKGLTFLLEKDTVEIV--G--ATKADRIRFKDG  222 (785)
T ss_pred             ----------HHHHHHHH---------HHcCCEEEeCCceEEEE--c--CCceEEEEECCC
Confidence                      12223333         25689999999999997  5  466777777643

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.87  E-value=7.7e-22  Score=203.34  Aligned_cols=169  Identities=12%  Similarity=0.111  Sum_probs=119.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCCCCCc-ccccc-ccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPF-GLVRS-GVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~~~~g-g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      +++|||||+|+||+.+|..|++..  ++++|+||++++.+. ..+.. ..+.. ...+++.....++++..+++++.+..
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l~~~~~~~~~~~gI~~~~g~~   81 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEELSLVREGFYEKHGIKVLVGER   81 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHccCCCHHHHHhCCCEEEcCCE
Confidence            469999999999999999998763  358999999988752 22111 11111 22334444445677788999998865


Q ss_pred             Ec------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 019876           95 LG------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ  167 (334)
Q Consensus        95 v~------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~  167 (334)
                      +.      +.|.+.++ .++||+||||||+ .|+.|++||.+.++++..+++.... ..      ......+++++||||
T Consensus        82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs-~p~~p~ipG~~~~~v~~~rt~~d~~-~l------~~~~~~~k~vvVIGg  153 (847)
T PRK14989         82 AITINRQEKVIHSSAGRTVFYDKLIMATGS-YPWIPPIKGSETQDCFVYRTIEDLN-AI------EACARRSKRGAVVGG  153 (847)
T ss_pred             EEEEeCCCcEEEECCCcEEECCEEEECCCC-CcCCCCCCCCCCCCeEEECCHHHHH-HH------HHHHhcCCeEEEECC
Confidence            42      23444444 4689999999999 5999999999888877554433211 00      001225789999999


Q ss_pred             CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876          168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       168 G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                      |++|+|+|..|++                    .|. +|+|+++.+.++.
T Consensus       154 G~iGlE~A~~L~~--------------------~G~-~VtvVe~~~~ll~  182 (847)
T PRK14989        154 GLLGLEAAGALKN--------------------LGV-ETHVIEFAPMLMA  182 (847)
T ss_pred             CHHHHHHHHHHHH--------------------cCC-eEEEEeccccchh
Confidence            9999999999996                    676 5999999887654

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=7.4e-21  Score=161.23  Aligned_cols=207  Identities=19%  Similarity=0.304  Sum_probs=151.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC----CCcccccc----ccCCCCcc---hhHHHHHHHHHhhcCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP----TPFGLVRS----GVAPDHPE---TKIVINQFSRVVQHERC   87 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~----~~gg~~~~----~~~p~~~~---~~~~~~~~~~~~~~~~i   87 (334)
                      ..+|+|||+|||+..||.|+++..  ++.+|||-.-    .+||++..    .-+|+|+.   ..++.+.++.+.+++|.
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt   85 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT   85 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence            459999999999999999999985  8999999542    25776643    12466653   45789999999999999


Q ss_pred             EEEeCeEEceE-------EecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH---hcCCCCCCCCCCCCC
Q 019876           88 SFFGNVTLGSS-------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW---YNGHPDGKNLSPDLK  157 (334)
Q Consensus        88 ~~~~~~~v~~~-------v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~  157 (334)
                      ++++.++-..+       +..+.....+|+||+|||+ ..+.+.+||... +     .|++.   .+..||..   ..++
T Consensus        86 ~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGA-sAkRl~~pg~ge-~-----~fWqrGiSaCAVCDGa---apif  155 (322)
T KOG0404|consen   86 EIITETVSKVDLSSKPFKLWTDARPVTADAVILATGA-SAKRLHLPGEGE-G-----EFWQRGISACAVCDGA---APIF  155 (322)
T ss_pred             eeeeeehhhccccCCCeEEEecCCceeeeeEEEeccc-ceeeeecCCCCc-c-----hHHhcccchhhcccCc---chhh
Confidence            99887654322       2233445689999999999 588889998721 1     12221   12334432   2356


Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      ++|..+|||||.++||.|.+|.+                    ++ ++|+|++|++.+.                     
T Consensus       156 rnk~laVIGGGDsA~EEA~fLtk--------------------ya-skVyii~Rrd~fR---------------------  193 (322)
T KOG0404|consen  156 RNKPLAVIGGGDSAMEEALFLTK--------------------YA-SKVYIIHRRDHFR---------------------  193 (322)
T ss_pred             cCCeeEEEcCcHHHHHHHHHHHh--------------------hc-cEEEEEEEhhhhh---------------------
Confidence            89999999999999999999996                    44 5799999998762                     


Q ss_pred             ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEee
Q 019876          238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA  313 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~  313 (334)
                                             ..+++|+.+.        ++.+|++++|+.+.+..  | +.+.+.++++.+..
T Consensus       194 -----------------------As~~Mq~ra~--------~npnI~v~~nt~~~ea~--g-d~~~l~~l~ikn~~  235 (322)
T KOG0404|consen  194 -----------------------ASKIMQQRAE--------KNPNIEVLYNTVAVEAL--G-DGKLLNGLRIKNVK  235 (322)
T ss_pred             -----------------------HHHHHHHHHh--------cCCCeEEEechhhhhhc--c-CcccccceEEEecc
Confidence                                   1235555554        47889999999999988  7 34678888888743

>PTZ00058 glutathione reductase; Provisional

Probab=99.87  E-value=6.6e-21  Score=188.58  Aligned_cols=183  Identities=16%  Similarity=0.269  Sum_probs=132.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc-ccccccCCCCcchh------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPETK------------------------   72 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg-~~~~~~~p~~~~~~------------------------   72 (334)
                      ..++|+||||||||+.||..+++.|  .+|+|||++. +|| +++.||.|.+.+..                        
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G--~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~  123 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNK--AKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL  123 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence            4579999999999999999999997  9999999974 555 55668877653110                        


Q ss_pred             -HH-----------HHHHHHHhhcCCcEEEeCeEE--c-eEEe----------------------------cccc-eecc
Q 019876           73 -IV-----------INQFSRVVQHERCSFFGNVTL--G-SSVS----------------------------LSEL-RQLY  108 (334)
Q Consensus        73 -~~-----------~~~~~~~~~~~~i~~~~~~~v--~-~~v~----------------------------~~~~-~~~y  108 (334)
                       .+           ...+.+.+++.+|+++.+...  + .+|.                            .+++ .+.|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~a  203 (561)
T PTZ00058        124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEG  203 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEEC
Confidence             11           112234456678998877631  1 1121                            1233 4689


Q ss_pred             CeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccc
Q 019876          109 HVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATT  188 (334)
Q Consensus       109 d~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~  188 (334)
                      |+||||||+ .|+.|++||.+  .+++..+++.              +..+++|+|||+|++|+|+|..|++        
T Consensus       204 d~lVIATGS-~P~~P~IpG~~--~v~ts~~~~~--------------l~~pk~VvIIGgG~iGlE~A~~l~~--------  258 (561)
T PTZ00058        204 KNILIAVGN-KPIFPDVKGKE--FTISSDDFFK--------------IKEAKRIGIAGSGYIAVELINVVNR--------  258 (561)
T ss_pred             CEEEEecCC-CCCCCCCCCce--eEEEHHHHhh--------------ccCCCEEEEECCcHHHHHHHHHHHH--------
Confidence            999999999 58889999864  3444433321              1136899999999999999999986        


Q ss_pred             cccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEccCc
Q 019876          189 DIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIREDD  241 (334)
Q Consensus       189 ~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~~  241 (334)
                                  .|. +||+++++++++..+++   +.+.+.|+..||+++++...
T Consensus       259 ------------~G~-~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V  301 (561)
T PTZ00058        259 ------------LGA-ESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANV  301 (561)
T ss_pred             ------------cCC-cEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence                        676 69999999988877765   45667788899999887643

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.87  E-value=1.1e-20  Score=184.61  Aligned_cols=164  Identities=17%  Similarity=0.240  Sum_probs=114.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc-ccccccCCCCcch--------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPET--------------------------   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg-~~~~~~~p~~~~~--------------------------   71 (334)
                      +++|+||||||+|++||..+++.+  .+|+|||+.+.+|| ++++||.|.+.+.                          
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDI   81 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence            589999999999999999999997  99999999766777 4455777764321                          


Q ss_pred             hHHHHH-----------HHHHhhcCCcEEEeCeEE--c-eE--Eecccc---eeccCeEEEeccCCCCCC-CCCCCccCC
Q 019876           72 KIVINQ-----------FSRVVQHERCSFFGNVTL--G-SS--VSLSEL---RQLYHVVVLAYGAESDRA-LGIPGEDLI  131 (334)
Q Consensus        72 ~~~~~~-----------~~~~~~~~~i~~~~~~~v--~-~~--v~~~~~---~~~yd~lIlATGs~~p~~-~~ipG~~~~  131 (334)
                      ..+..+           +...++..+++++.+...  + ..  +...++   .+.||+||||||+ .|+. |.+++ +.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~p~~~~-~~~  159 (471)
T PRK06467         82 DKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGS-RPIQLPFIPH-DDP  159 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCC-CCCCCCCCCC-CCC
Confidence            111111           123355668999877643  1 12  332233   4689999999999 5764 44554 344


Q ss_pred             CccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEee
Q 019876          132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR  211 (334)
Q Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r  211 (334)
                      ++++..+.+.    .         ...+++++|||+|++|+|+|..|++                    .|. +||++++
T Consensus       160 ~v~~~~~~~~----~---------~~~~~~vvIiGgG~iG~E~A~~l~~--------------------~G~-~Vtlv~~  205 (471)
T PRK06467        160 RIWDSTDALE----L---------KEVPKRLLVMGGGIIGLEMGTVYHR--------------------LGS-EVDVVEM  205 (471)
T ss_pred             cEEChHHhhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-CEEEEec
Confidence            5655443331    1         0145899999999999999999986                    675 5999999


Q ss_pred             cCccccCCC
Q 019876          212 RGPVQAACT  220 (334)
Q Consensus       212 ~~~~~~~~~  220 (334)
                      .+.+++.++
T Consensus       206 ~~~il~~~d  214 (471)
T PRK06467        206 FDQVIPAAD  214 (471)
T ss_pred             CCCCCCcCC
Confidence            988775554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.87  E-value=1.3e-20  Score=183.96  Aligned_cols=162  Identities=19%  Similarity=0.284  Sum_probs=112.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcc--------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPE--------------------------   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~--------------------------   70 (334)
                      ..++|+||||||||++||..+++.+  .+|+|+|+.+ +||.+ ..+|.|.+..                          
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID   79 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCC--CcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence            4579999999999999999999997  9999999987 67754 5577675421                          


Q ss_pred             hhHHHHH-----------HHHHhhcCCcEEEeCeEEc---eEEecc----cceeccCeEEEeccCCCCCCCCCCCccCCC
Q 019876           71 TKIVINQ-----------FSRVVQHERCSFFGNVTLG---SSVSLS----ELRQLYHVVVLAYGAESDRALGIPGEDLIG  132 (334)
Q Consensus        71 ~~~~~~~-----------~~~~~~~~~i~~~~~~~v~---~~v~~~----~~~~~yd~lIlATGs~~p~~~~ipG~~~~~  132 (334)
                      ..++.++           +...++..+++++.+....   ..+.+.    ...+.||+||||||+ .|..|  ||.+..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs-~p~~~--pg~~~~~  156 (462)
T PRK06416         80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGS-RPREL--PGIEIDG  156 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCC-CCCCC--CCCCCCC
Confidence            1122222           3345566789988776431   123332    134689999999999 46543  5554333


Q ss_pred             --ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEe
Q 019876          133 --VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG  210 (334)
Q Consensus       133 --v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~  210 (334)
                        +++..+...    .         ...+++++|||+|++|+|+|..|++                    .|. +||+++
T Consensus       157 ~~v~~~~~~~~----~---------~~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g~-~Vtli~  202 (462)
T PRK06416        157 RVIWTSDEALN----L---------DEVPKSLVVIGGGYIGVEFASAYAS--------------------LGA-EVTIVE  202 (462)
T ss_pred             CeEEcchHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEE
Confidence              444333221    1         0145899999999999999999986                    565 699999


Q ss_pred             ecCccccCC
Q 019876          211 RRGPVQAAC  219 (334)
Q Consensus       211 r~~~~~~~~  219 (334)
                      |.+.+++.+
T Consensus       203 ~~~~~l~~~  211 (462)
T PRK06416        203 ALPRILPGE  211 (462)
T ss_pred             cCCCcCCcC
Confidence            998776444

>PRK06116 glutathione reductase; Validated

Probab=99.87  E-value=5.9e-21  Score=185.79  Aligned_cols=162  Identities=17%  Similarity=0.232  Sum_probs=113.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCCcch--------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPET--------------------------   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~~~~--------------------------   71 (334)
                      .++|+||||||||++||..|++.+  .+|+|||+. .+||. ++.+|.|.+.+.                          
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYG--AKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD   80 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence            479999999999999999999997  999999986 56664 445666654110                          


Q ss_pred             -hHH-----------HHHHHHHhhcCCcEEEeCeEE---ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccch
Q 019876           72 -KIV-----------INQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA  136 (334)
Q Consensus        72 -~~~-----------~~~~~~~~~~~~i~~~~~~~v---~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~  136 (334)
                       ..+           ...+...+...+++++.+...   ...+.++...+.||+||||||+ .|+.|++||.+.  +++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~g~~~--~~~~  157 (450)
T PRK06116         81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGG-RPSIPDIPGAEY--GITS  157 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCcce--eEch
Confidence             111           112233455678998877642   1244453345789999999999 588889998642  3333


Q ss_pred             hhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      .++..    .         ...+++|+|||+|.+|+|+|..|++                    .|. +|++++|++.++
T Consensus       158 ~~~~~----~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g~-~Vtlv~~~~~~l  203 (450)
T PRK06116        158 DGFFA----L---------EELPKRVAVVGAGYIAVEFAGVLNG--------------------LGS-ETHLFVRGDAPL  203 (450)
T ss_pred             hHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEecCCCCc
Confidence            22211    1         0146899999999999999999986                    565 699999988765


Q ss_pred             cCCC
Q 019876          217 AACT  220 (334)
Q Consensus       217 ~~~~  220 (334)
                      ..++
T Consensus       204 ~~~~  207 (450)
T PRK06116        204 RGFD  207 (450)
T ss_pred             cccC
Confidence            4443

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.87  E-value=1.8e-21  Score=186.39  Aligned_cols=170  Identities=15%  Similarity=0.146  Sum_probs=114.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-ccccc--cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVR--SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-gg~~~--~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      .++|||||||+||++||..|++.+++.+|+|+++++.. +....  ..+..... .........+++...+++++.++.+
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~g~~V   81 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDS-PQLQQVLPANWWQENNVHLHSGVTI   81 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCC-ccccccCCHHHHHHCCCEEEcCCEE
Confidence            46899999999999999999999877899999998653 21110  00000000 0000011134456678999988654


Q ss_pred             c------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCC
Q 019876           96 G------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG  168 (334)
Q Consensus        96 ~------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G  168 (334)
                      .      +.+.+.++ .+.||+||||||+ .|+.+++++...+++++.++......       +...+..+++|+|||+|
T Consensus        82 ~~id~~~~~v~~~~g~~~~yd~LViATGs-~~~~~p~~~~~~~~v~~~~~~~da~~-------l~~~~~~~~~vvViGgG  153 (396)
T PRK09754         82 KTLGRDTRELVLTNGESWHWDQLFIATGA-AARPLPLLDALGERCFTLRHAGDAAR-------LREVLQPERSVVIVGAG  153 (396)
T ss_pred             EEEECCCCEEEECCCCEEEcCEEEEccCC-CCCCCCCCCcCCCCEEecCCHHHHHH-------HHHHhhcCCeEEEECCC
Confidence            1      23444444 4689999999999 58777877766677776543322110       11123367999999999


Q ss_pred             HHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC
Q 019876          169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA  218 (334)
Q Consensus       169 ~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~  218 (334)
                      ++|+|+|..|++                    .|. +||++++.+.++..
T Consensus       154 ~ig~E~A~~l~~--------------------~g~-~Vtlv~~~~~~l~~  182 (396)
T PRK09754        154 TIGLELAASATQ--------------------RRC-KVTVIELAATVMGR  182 (396)
T ss_pred             HHHHHHHHHHHH--------------------cCC-eEEEEecCCcchhh
Confidence            999999999986                    565 69999998877544

>PLN02546 glutathione reductase

Probab=99.87  E-value=1.4e-20  Score=186.39  Aligned_cols=163  Identities=15%  Similarity=0.176  Sum_probs=115.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC---------CCCcc-ccccccCCCCcchh----------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---------PTPFG-LVRSGVAPDHPETK----------------   72 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~---------~~~gg-~~~~~~~p~~~~~~----------------   72 (334)
                      .++|+|||+||+|+.||..+++.|  .+|+|||+.         ..+|| |+++||.|.+.+..                
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~  156 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFG--ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW  156 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence            478999999999999999999997  999999961         23455 44557766543110                


Q ss_pred             ----------------------HHHHHHHHHhhcCCcEEEeCeE--Ec-eEEecccceeccCeEEEeccCCCCCCCCCCC
Q 019876           73 ----------------------IVINQFSRVVQHERCSFFGNVT--LG-SSVSLSELRQLYHVVVLAYGAESDRALGIPG  127 (334)
Q Consensus        73 ----------------------~~~~~~~~~~~~~~i~~~~~~~--v~-~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG  127 (334)
                                            .+..++.+.+++.+++++.+..  ++ ..+.++...+.||+||||||+ .|..|++||
T Consensus       157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs-~p~~P~IpG  235 (558)
T PLN02546        157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGG-RPFIPDIPG  235 (558)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCC-CCCCCCCCC
Confidence                                  1122344556677899887643  22 234443345789999999999 588889998


Q ss_pred             ccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEE
Q 019876          128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY  207 (334)
Q Consensus       128 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt  207 (334)
                      .+  .++++.++..    .         ...+++|+|||+|++|+|+|..|+.                    .+. +|+
T Consensus       236 ~~--~v~~~~~~l~----~---------~~~~k~V~VIGgG~iGvE~A~~L~~--------------------~g~-~Vt  279 (558)
T PLN02546        236 IE--HAIDSDAALD----L---------PSKPEKIAIVGGGYIALEFAGIFNG--------------------LKS-DVH  279 (558)
T ss_pred             hh--hccCHHHHHh----c---------cccCCeEEEECCCHHHHHHHHHHHh--------------------cCC-eEE
Confidence            64  2444433221    1         1256899999999999999999985                    554 699


Q ss_pred             EEeecCccccCCC
Q 019876          208 LVGRRGPVQAACT  220 (334)
Q Consensus       208 iv~r~~~~~~~~~  220 (334)
                      ++++.+.++..++
T Consensus       280 lv~~~~~il~~~d  292 (558)
T PLN02546        280 VFIRQKKVLRGFD  292 (558)
T ss_pred             EEEeccccccccC
Confidence            9999887765444

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.87  E-value=1.7e-20  Score=183.61  Aligned_cols=165  Identities=18%  Similarity=0.220  Sum_probs=110.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcchh------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETK------------------------   72 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~~~------------------------   72 (334)
                      ..++|+||||||||++||..|++.|  .+|+|||+. .+||.+ ++||.|.+.+..                        
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   79 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLG--LKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD   79 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            3589999999999999999999997  999999996 566655 557767643111                        


Q ss_pred             --HH-------H----HHHHHHhhcCCcEEEeCeEE--c----------eEEecccc---eeccCeEEEeccCCCCCCCC
Q 019876           73 --IV-------I----NQFSRVVQHERCSFFGNVTL--G----------SSVSLSEL---RQLYHVVVLAYGAESDRALG  124 (334)
Q Consensus        73 --~~-------~----~~~~~~~~~~~i~~~~~~~v--~----------~~v~~~~~---~~~yd~lIlATGs~~p~~~~  124 (334)
                        .+       .    ....+.+++.+++++.+...  +          ..+...++   .+.||+||||||+ .|..++
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs-~p~~~p  158 (472)
T PRK05976         80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS-RPVELP  158 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC-CCCCCC
Confidence              01       1    11224456668998877542  1          12333333   4689999999999 475443


Q ss_pred             CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc
Q 019876          125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR  204 (334)
Q Consensus       125 ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (334)
                      ..+.+...+++..+...    ..         ..+++|+|||+|++|+|+|..|++                    .|. 
T Consensus       159 ~~~~~~~~~~~~~~~~~----~~---------~~~~~vvIIGgG~~G~E~A~~l~~--------------------~g~-  204 (472)
T PRK05976        159 GLPFDGEYVISSDEALS----LE---------TLPKSLVIVGGGVIGLEWASMLAD--------------------FGV-  204 (472)
T ss_pred             CCCCCCceEEcchHhhC----cc---------ccCCEEEEECCCHHHHHHHHHHHH--------------------cCC-
Confidence            22222222443333221    10         135899999999999999999986                    565 


Q ss_pred             eEEEEeecCccccCCC
Q 019876          205 KVYLVGRRGPVQAACT  220 (334)
Q Consensus       205 ~Vtiv~r~~~~~~~~~  220 (334)
                      +||+++|.+.++..++
T Consensus       205 ~Vtli~~~~~il~~~~  220 (472)
T PRK05976        205 EVTVVEAADRILPTED  220 (472)
T ss_pred             eEEEEEecCccCCcCC
Confidence            6999999987765443

>PRK10262 thioredoxin reductase; Provisional

Probab=99.87  E-value=2.5e-20  Score=173.56  Aligned_cols=204  Identities=20%  Similarity=0.255  Sum_probs=135.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc-c---CCCC---cchhHHHHHHHHHhhcCCcEEE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-V---APDH---PETKIVINQFSRVVQHERCSFF   90 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~-~---~p~~---~~~~~~~~~~~~~~~~~~i~~~   90 (334)
                      ..++|+||||||||++||.+|.+.+  .++++||.. ..||.+... .   +|..   .....+..++.++...++++++
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII   81 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence            4679999999999999999999997  889999964 556654321 0   1321   2233566777777777777766


Q ss_pred             eCeEEce-------EEecccceeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCCCC
Q 019876           91 GNVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTD  160 (334)
Q Consensus        91 ~~~~v~~-------~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k  160 (334)
                      .+.....       .++.+...+.||+||||||+ .|+.|++||.+   ..+++.+..        ++     .....++
T Consensus        82 ~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~-~~~~~~i~g~~~~~~~~v~~~~~--------~~-----~~~~~g~  147 (321)
T PRK10262         82 FDHINKVDLQNRPFRLTGDSGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACAT--------CD-----GFFYRNQ  147 (321)
T ss_pred             eeEEEEEEecCCeEEEEecCCEEEECEEEECCCC-CCCCCCCCCHHHcCCCcEEEeec--------CC-----HHHcCCC
Confidence            5532211       12222334689999999999 48888999864   223322210        00     1123689


Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED  240 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~  240 (334)
                      +|+|||+|++|+|+|..|++                    .+ ++|++++|++.+.  .. +.+.               
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~--------------------~~-~~Vtlv~~~~~~~--~~-~~~~---------------  188 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSN--------------------IA-SEVHLIHRRDGFR--AE-KILI---------------  188 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHh--------------------hC-CEEEEEEECCccC--CC-HHHH---------------
Confidence            99999999999999999996                    44 4799999987542  11 1111               


Q ss_pred             ccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                            +.+++.         +++.||++++++.+++|.  + +++.+++|++.+
T Consensus       189 ----------------------~~~~~~---------l~~~gV~i~~~~~v~~v~--~-~~~~~~~v~~~~  225 (321)
T PRK10262        189 ----------------------KRLMDK---------VENGNIILHTNRTLEEVT--G-DQMGVTGVRLRD  225 (321)
T ss_pred             ----------------------HHHHhh---------ccCCCeEEEeCCEEEEEE--c-CCccEEEEEEEE
Confidence                                  112222         246789999999999997  5 344677787764

>PLN02507 glutathione reductase

Probab=99.86  E-value=1.7e-20  Score=184.24  Aligned_cols=175  Identities=19%  Similarity=0.260  Sum_probs=116.6

Q ss_pred             ccccccccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcC---------CCCCcccc-ccccCCCCcch-----
Q 019876            7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR---------LPTPFGLV-RSGVAPDHPET-----   71 (334)
Q Consensus         7 ~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~---------~~~~gg~~-~~~~~p~~~~~-----   71 (334)
                      |++...+.+....++|+||||||+|+.||..+.+.|  .+|+|||+         ...+||.| +.||.|.+...     
T Consensus        13 ~~~~~~~~~~~~~yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~   90 (499)
T PLN02507         13 KVNADEANATHYDFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATF   90 (499)
T ss_pred             hHhhhhhcccccccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHH
Confidence            444333322234579999999999999999999997  99999996         24467765 44776654321     


Q ss_pred             ----------------------hHHH-----------HHHHHHhhcCCcEEEeCeE--Ec---eEEecccc---eeccCe
Q 019876           72 ----------------------KIVI-----------NQFSRVVQHERCSFFGNVT--LG---SSVSLSEL---RQLYHV  110 (334)
Q Consensus        72 ----------------------~~~~-----------~~~~~~~~~~~i~~~~~~~--v~---~~v~~~~~---~~~yd~  110 (334)
                                            ..+.           ..+...+...+|+++.+..  ++   ..++..++   .+.||+
T Consensus        91 ~~~~~~~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~  170 (499)
T PLN02507         91 GGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKH  170 (499)
T ss_pred             HHHHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCE
Confidence                                  0111           1122344557888887743  22   23333343   358899


Q ss_pred             EEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccc
Q 019876          111 VVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDI  190 (334)
Q Consensus       111 lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~  190 (334)
                      ||||||+ .|..|++||.+.  ..+..+...    .      .   ..+++|+|||+|++|+|+|..|++          
T Consensus       171 LIIATGs-~p~~p~ipG~~~--~~~~~~~~~----l------~---~~~k~vvVIGgG~ig~E~A~~l~~----------  224 (499)
T PLN02507        171 ILIATGS-RAQRPNIPGKEL--AITSDEALS----L------E---ELPKRAVVLGGGYIAVEFASIWRG----------  224 (499)
T ss_pred             EEEecCC-CCCCCCCCCccc--eechHHhhh----h------h---hcCCeEEEECCcHHHHHHHHHHHH----------
Confidence            9999999 588889998642  222222211    1      0   136899999999999999999985          


Q ss_pred             cHHHHHHHhcCCcceEEEEeecCccccCCC
Q 019876          191 ASYAWTALEGSSIRKVYLVGRRGPVQAACT  220 (334)
Q Consensus       191 ~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~  220 (334)
                                .|. +|+|++|.+.++..++
T Consensus       225 ----------~G~-~Vtli~~~~~~l~~~d  243 (499)
T PLN02507        225 ----------MGA-TVDLFFRKELPLRGFD  243 (499)
T ss_pred             ----------cCC-eEEEEEecCCcCcccC
Confidence                      565 6999999887654444

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.86  E-value=3.5e-20  Score=181.00  Aligned_cols=166  Identities=21%  Similarity=0.223  Sum_probs=115.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchh--------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETK--------------------------   72 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~--------------------------   72 (334)
                      +++|+|||+||+|+.||..+.+.+  .+|+|||++...|.+++.+|.|.+.+..                          
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g--~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   78 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLG--ADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV   78 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence            468999999999999999999997  9999999976434445557777643211                          


Q ss_pred             ---HH-----------HHHHHHHhhcCCcEEEeCeEEc-------eE--Eecccc---eeccCeEEEeccCCCCCCCCCC
Q 019876           73 ---IV-----------INQFSRVVQHERCSFFGNVTLG-------SS--VSLSEL---RQLYHVVVLAYGAESDRALGIP  126 (334)
Q Consensus        73 ---~~-----------~~~~~~~~~~~~i~~~~~~~v~-------~~--v~~~~~---~~~yd~lIlATGs~~p~~~~ip  126 (334)
                         .+           ...+.+.++..+++++.+....       ..  +...++   .+.||+||||||+ .|..|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs-~p~~~p~~  157 (466)
T PRK07845         79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA-SPRILPTA  157 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC-CCCCCCCC
Confidence               00           1123345566789998875432       22  323333   4689999999999 58766665


Q ss_pred             CccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceE
Q 019876          127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV  206 (334)
Q Consensus       127 G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V  206 (334)
                      +.+...+++..++..    ..         ..+++++|||+|.+|+|+|..|++                    .|. +|
T Consensus       158 ~~~~~~v~~~~~~~~----~~---------~~~~~vvVIGgG~ig~E~A~~l~~--------------------~g~-~V  203 (466)
T PRK07845        158 EPDGERILTWRQLYD----LD---------ELPEHLIVVGSGVTGAEFASAYTE--------------------LGV-KV  203 (466)
T ss_pred             CCCCceEEeehhhhc----cc---------ccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eE
Confidence            554455665544321    10         135899999999999999999986                    565 69


Q ss_pred             EEEeecCccccCCCH
Q 019876          207 YLVGRRGPVQAACTA  221 (334)
Q Consensus       207 tiv~r~~~~~~~~~~  221 (334)
                      |++++.+.++..+++
T Consensus       204 tli~~~~~~l~~~d~  218 (466)
T PRK07845        204 TLVSSRDRVLPGEDA  218 (466)
T ss_pred             EEEEcCCcCCCCCCH
Confidence            999999887665543

>PRK14694 putative mercuric reductase; Provisional

Probab=99.86  E-value=5.2e-20  Score=179.92  Aligned_cols=162  Identities=20%  Similarity=0.260  Sum_probs=108.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCcc-------------------------
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHPE-------------------------   70 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~~-------------------------   70 (334)
                      ...++|+||||||||++||..|++.+  .+|+|||+. .+||.|. .||.|.+..                         
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g--~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~   80 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERG--ARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV   80 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence            45689999999999999999999997  899999997 4666553 366554321                         


Q ss_pred             --hhHHHHHH------------HHHhhc-CCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCCCCC
Q 019876           71 --TKIVINQF------------SRVVQH-ERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPG  127 (334)
Q Consensus        71 --~~~~~~~~------------~~~~~~-~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG  127 (334)
                        ...+..+.            ...+.. .+++++.+....     ..+.+.++   +++||+||||||+ .|+.|++||
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs-~p~~p~i~G  159 (468)
T PRK14694         81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA-RPAEPPVPG  159 (468)
T ss_pred             cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC-CCCCCCCCC
Confidence              01111111            111222 367777665431     23443333   4689999999999 589999999


Q ss_pred             ccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEE
Q 019876          128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY  207 (334)
Q Consensus       128 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt  207 (334)
                      .+...+++..+...    .      .   ..+++++|||+|++|+|+|..|++                    .+. +|+
T Consensus       160 ~~~~~~~~~~~~~~----l------~---~~~~~vvViG~G~~G~E~A~~l~~--------------------~g~-~Vt  205 (468)
T PRK14694        160 LAETPYLTSTSALE----L------D---HIPERLLVIGASVVALELAQAFAR--------------------LGS-RVT  205 (468)
T ss_pred             CCCCceEcchhhhc----h------h---cCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEE
Confidence            76433333322110    0      0   136899999999999999999986                    565 699


Q ss_pred             EEeecCcccc
Q 019876          208 LVGRRGPVQA  217 (334)
Q Consensus       208 iv~r~~~~~~  217 (334)
                      ++.+ ++++.
T Consensus       206 lv~~-~~~l~  214 (468)
T PRK14694        206 VLAR-SRVLS  214 (468)
T ss_pred             EEEC-CCCCC
Confidence            9986 44443

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.86  E-value=2.9e-20  Score=181.26  Aligned_cols=185  Identities=17%  Similarity=0.197  Sum_probs=130.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcch----------------------------
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET----------------------------   71 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~----------------------------   71 (334)
                      |+|+|||+||||++||..+++.+  .+|+|||+++..|.+++.||.|.+.+.                            
T Consensus         1 ~~vvVIG~G~aG~~aA~~~~~~g--~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   78 (458)
T PRK06912          1 SKLVVIGGGPAGYVAAITAAQNG--KNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW   78 (458)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence            48999999999999999999987  999999998655556666777744321                            


Q ss_pred             hHHHH-----------HHHHHhhcCCcEEEeCeEE---ceE--Eecccc--eeccCeEEEeccCCCCCCCCCCCccCCCc
Q 019876           72 KIVIN-----------QFSRVVQHERCSFFGNVTL---GSS--VSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV  133 (334)
Q Consensus        72 ~~~~~-----------~~~~~~~~~~i~~~~~~~v---~~~--v~~~~~--~~~yd~lIlATGs~~p~~~~ipG~~~~~v  133 (334)
                      ..+..           .....++..+++++.+...   ...  +...+.  .+.||+||||||+ .|+.+++++.+...+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs-~p~~~p~~~~~~~~v  157 (458)
T PRK06912         79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGS-EPTELPFAPFDGKWI  157 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCC-CCCCCCCCCCCCCeE
Confidence            11111           1122344567888766542   122  222232  4689999999999 588788887665556


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++..+...    ..         ..+++++|||+|++|+|+|..|.+                    .|. +|+++++.+
T Consensus       158 ~~~~~~~~----~~---------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g~-~Vtli~~~~  203 (458)
T PRK06912        158 INSKHAMS----LP---------SIPSSLLIVGGGVIGCEFASIYSR--------------------LGT-KVTIVEMAP  203 (458)
T ss_pred             EcchHHhC----cc---------ccCCcEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEecCC
Confidence            65543321    11         135899999999999999999885                    565 699999999


Q ss_pred             ccccCCCH---HHHHHHHcCCceEEEEccCc
Q 019876          214 PVQAACTA---KELREILGIKNLYVHIREDD  241 (334)
Q Consensus       214 ~~~~~~~~---~~~~~~l~~~gv~~~~~~~~  241 (334)
                      .++..+++   +.+.+.|+..||+++++...
T Consensus       204 ~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V  234 (458)
T PRK06912        204 QLLPGEDEDIAHILREKLENDGVKIFTGAAL  234 (458)
T ss_pred             CcCccccHHHHHHHHHHHHHCCCEEEECCEE
Confidence            88777654   45666777889999987543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.86  E-value=3.9e-20  Score=184.07  Aligned_cols=159  Identities=23%  Similarity=0.263  Sum_probs=113.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-cc---CCCCc--chhHHHHHHHHHhhcCCcEEEeC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GV---APDHP--ETKIVINQFSRVVQHERCSFFGN   92 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~---~p~~~--~~~~~~~~~~~~~~~~~i~~~~~   92 (334)
                      .++|+||||||||++||.+|++.+  ++|+|||++ ..||.+.. ..   +|+..  ...++..++.+.++..+++++..
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g--~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~   80 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQA   80 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEecc
Confidence            579999999999999999999987  999999996 56666532 11   23322  23467777888888889988644


Q ss_pred             eEEce-------EEecccceeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeE
Q 019876           93 VTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA  162 (334)
Q Consensus        93 ~~v~~-------~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~v  162 (334)
                      .....       .+...+....||+||||||+ .|+.|++||.+   ..+++.+.        .++     .....+++|
T Consensus        81 ~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa-~p~~~~ipG~~~~~~~~v~~~~--------~~~-----~~~~~g~~V  146 (555)
T TIGR03143        81 EVLDVDFDGDIKTIKTARGDYKTLAVLIATGA-SPRKLGFPGEEEFTGRGVAYCA--------TCD-----GEFFTGMDV  146 (555)
T ss_pred             EEEEEEecCCEEEEEecCCEEEEeEEEECCCC-ccCCCCCCCHHHhCCceEEEEe--------ecC-----hhhcCCCEE
Confidence            33221       23333445678999999999 58889999964   22333221        111     113368999


Q ss_pred             EEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       163 vVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|||||++|+|+|..|++                    .+. +|++++|.+.+
T Consensus       147 vVIGgG~~g~E~A~~L~~--------------------~g~-~Vtli~~~~~~  178 (555)
T TIGR03143       147 FVIGGGFAAAEEAVFLTR--------------------YAS-KVTVIVREPDF  178 (555)
T ss_pred             EEECCCHHHHHHHHHHHc--------------------cCC-EEEEEEeCCcc
Confidence            999999999999999986                    554 69999998754

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.85  E-value=6.6e-20  Score=179.02  Aligned_cols=163  Identities=15%  Similarity=0.249  Sum_probs=110.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcchhH--HH--------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETKI--VI--------------------   75 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~~~~--~~--------------------   75 (334)
                      .++|+|||+||||++||..+.+.|  .+|+|||+.+.+||.+ +.||.|.+.+...  ..                    
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G--~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~   80 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN   80 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence            479999999999999999999997  9999999866677764 5578787643211  00                    


Q ss_pred             ----------------HHHHHHhhcCCcEEEeCeEE--c-eE--Eecccc---eeccCeEEEeccCCCCCCCCCCCccCC
Q 019876           76 ----------------NQFSRVVQHERCSFFGNVTL--G-SS--VSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLI  131 (334)
Q Consensus        76 ----------------~~~~~~~~~~~i~~~~~~~v--~-~~--v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~~~  131 (334)
                                      ......++..+++++.+...  + ..  +...++   .+.||+||||||+ .|.  ++||.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~--~ipg~~~~  157 (466)
T PRK06115         81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGS-EPT--PLPGVTID  157 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCC-CCC--CCCCCCCC
Confidence                            01112233446777655321  1 12  222232   4689999999999 464  46776543


Q ss_pred             C--ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEE
Q 019876          132 G--VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV  209 (334)
Q Consensus       132 ~--v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv  209 (334)
                      +  +++..+++.    .         ...+++|+|||+|++|+|+|..|.+                    .|. +||++
T Consensus       158 ~~~~~~~~~~~~----~---------~~~~~~vvIIGgG~ig~E~A~~l~~--------------------~G~-~Vtli  203 (466)
T PRK06115        158 NQRIIDSTGALS----L---------PEVPKHLVVIGAGVIGLELGSVWRR--------------------LGA-QVTVV  203 (466)
T ss_pred             CCeEECHHHHhC----C---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEE
Confidence            4  333332221    0         0146999999999999999999886                    565 69999


Q ss_pred             eecCccccCCC
Q 019876          210 GRRGPVQAACT  220 (334)
Q Consensus       210 ~r~~~~~~~~~  220 (334)
                      ++.++++..++
T Consensus       204 e~~~~il~~~d  214 (466)
T PRK06115        204 EYLDRICPGTD  214 (466)
T ss_pred             eCCCCCCCCCC
Confidence            99988765544

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.85  E-value=7.7e-20  Score=167.90  Aligned_cols=158  Identities=27%  Similarity=0.379  Sum_probs=112.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-c---cCCCCc---chhHHHHHHHHHhhcCCcEEEeC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G---VAPDHP---ETKIVINQFSRVVQHERCSFFGN   92 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~---~~p~~~---~~~~~~~~~~~~~~~~~i~~~~~   92 (334)
                      ++|+|||||+||++||..|++.+  .+|+|||+.+ +||.+.. .   -+|++.   ...++..++.+.+++.++++++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~   77 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARAN--LKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYE   77 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEE
Confidence            48999999999999999999987  9999999886 5554432 1   124432   33577788888888889998874


Q ss_pred             eEEce-------EEeccc-ceeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCCCCe
Q 019876           93 VTLGS-------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT  161 (334)
Q Consensus        93 ~~v~~-------~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~  161 (334)
                      ..+..       .+...+ ..+.||+||+|||+ .|..+++||.+.   .+++.+.        ..     ......+++
T Consensus        78 ~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~i~g~~~~~~~~~~~~~--------~~-----~~~~~~~~~  143 (300)
T TIGR01292        78 EVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA-SARKLGIPGEDEFLGRGVSYCA--------TC-----DGPFFKNKE  143 (300)
T ss_pred             EEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC-CcccCCCCChhhcCCccEEEee--------ec-----ChhhcCCCE
Confidence            33321       233333 24689999999999 588888998642   1222111        00     011236789


Q ss_pred             EEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       162 vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      |+|||+|++|+|+|..|++                    .+ ++|+++.|++.+
T Consensus       144 v~ViG~G~~~~e~a~~l~~--------------------~~-~~V~~v~~~~~~  176 (300)
T TIGR01292       144 VAVVGGGDSAIEEALYLTR--------------------IA-KKVTLVHRRDKF  176 (300)
T ss_pred             EEEECCChHHHHHHHHHHh--------------------hc-CEEEEEEeCccc
Confidence            9999999999999999985                    44 579999998644

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.85  E-value=6.1e-20  Score=179.20  Aligned_cols=161  Identities=17%  Similarity=0.246  Sum_probs=109.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcchh--HHHHH-------------------
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETK--IVINQ-------------------   77 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~~~--~~~~~-------------------   77 (334)
                      ++|+||||||||++||..|.+.+  .+|+|||+ +.+||.+ +++|.|.+....  ++...                   
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G--~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   78 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLG--LKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE   78 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence            68999999999999999999987  99999999 6677765 446766642211  11111                   


Q ss_pred             ----------------HHHHhhcCCcEEEeCeEEc---eE--Eeccc--ceeccCeEEEeccCCCCCCCCCC-CccCCCc
Q 019876           78 ----------------FSRVVQHERCSFFGNVTLG---SS--VSLSE--LRQLYHVVVLAYGAESDRALGIP-GEDLIGV  133 (334)
Q Consensus        78 ----------------~~~~~~~~~i~~~~~~~v~---~~--v~~~~--~~~~yd~lIlATGs~~p~~~~ip-G~~~~~v  133 (334)
                                      ....++..+++++.+....   ..  +...+  ..+.||+||||||+ .|+.|++| +.+...+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~-~p~~~~~~~~~~~~~~  157 (461)
T TIGR01350        79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGS-RPRSLPGPFDFDGEVV  157 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCC-CCCCCCCCCCCCCceE
Confidence                            1123344567777665431   12  22222  24689999999999 58877776 3332234


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++..+...    .         ...+++++|||+|.+|+|+|..|.+                    .|. +||+++|.+
T Consensus       158 ~~~~~~~~----~---------~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtli~~~~  203 (461)
T TIGR01350       158 ITSTGALN----L---------KEVPESLVIIGGGVIGIEFASIFAS--------------------LGS-KVTVIEMLD  203 (461)
T ss_pred             EcchHHhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEEcCC
Confidence            44333221    0         0145899999999999999999986                    565 699999988


Q ss_pred             ccccC
Q 019876          214 PVQAA  218 (334)
Q Consensus       214 ~~~~~  218 (334)
                      .+++.
T Consensus       204 ~~l~~  208 (461)
T TIGR01350       204 RILPG  208 (461)
T ss_pred             CCCCC
Confidence            76543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.85  E-value=5.5e-20  Score=179.86  Aligned_cols=168  Identities=20%  Similarity=0.285  Sum_probs=112.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCC--------CCCccc-cccccCCCCcchh---------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRL--------PTPFGL-VRSGVAPDHPETK---------------   72 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~--------~~~gg~-~~~~~~p~~~~~~---------------   72 (334)
                      +.++|+|||+||+|+.||..+++. +  .+|+|||+.        ..+||. +++||.|.+.+..               
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g--~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g   79 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYK--KRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG   79 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcC--CEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence            457999999999999999999996 6  999999973        346664 4557766643211               


Q ss_pred             -------------HH-----------HHHHHHHhhc-CCcEEEeCeEE--c-eEEecc---------cceeccCeEEEec
Q 019876           73 -------------IV-----------INQFSRVVQH-ERCSFFGNVTL--G-SSVSLS---------ELRQLYHVVVLAY  115 (334)
Q Consensus        73 -------------~~-----------~~~~~~~~~~-~~i~~~~~~~v--~-~~v~~~---------~~~~~yd~lIlAT  115 (334)
                                   .+           ...+.+.++. .+++++.+...  + .++.+.         ...+.||+|||||
T Consensus        80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIAT  159 (486)
T TIGR01423        80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLAT  159 (486)
T ss_pred             eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEec
Confidence                         01           1112233444 48888876542  1 233332         1246899999999


Q ss_pred             cCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHH
Q 019876          116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW  195 (334)
Q Consensus       116 Gs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~  195 (334)
                      |+ .|..|++||.+.  +++..+.+.    .      .   ..+++++|||+|++|+|+|..+..               
T Consensus       160 Gs-~p~~p~i~G~~~--~~~~~~~~~----~------~---~~~~~vvIIGgG~iG~E~A~~~~~---------------  208 (486)
T TIGR01423       160 GS-WPQMLGIPGIEH--CISSNEAFY----L------D---EPPRRVLTVGGGFISVEFAGIFNA---------------  208 (486)
T ss_pred             CC-CCCCCCCCChhh--eechhhhhc----c------c---cCCCeEEEECCCHHHHHHHHHHHH---------------
Confidence            99 588899998652  333322211    0      0   146899999999999999987763               


Q ss_pred             HHHhcCCcceEEEEeecCccccCCCH
Q 019876          196 TALEGSSIRKVYLVGRRGPVQAACTA  221 (334)
Q Consensus       196 ~~~~~~~~~~Vtiv~r~~~~~~~~~~  221 (334)
                        |...|. +|||+++.+.++..+++
T Consensus       209 --l~~~G~-~Vtli~~~~~il~~~d~  231 (486)
T TIGR01423       209 --YKPRGG-KVTLCYRNNMILRGFDS  231 (486)
T ss_pred             --hccCCC-eEEEEecCCccccccCH
Confidence              112354 79999999888755543

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.85  E-value=1.6e-20  Score=176.40  Aligned_cols=215  Identities=18%  Similarity=0.204  Sum_probs=146.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC-CccccccccCCCCcchhHHHHHHHHHhhcCC-cEEEeCeEE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTL   95 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~-~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~-i~~~~~~~v   95 (334)
                      .+++|||||||++|+.+|..|.+..++.+|++||++++ +.-.+.|.+..+.....++...+...+...+ ++|+.+...
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~   81 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT   81 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence            46799999999999999999998733589999999875 3344444444454455677777888888555 999988765


Q ss_pred             c-----eEEeccc-ceeccCeEEEeccCCCCCCCCCCCcc--C---CCccchhhHHHHhcCCCCCCC-CCCCCCCCCeEE
Q 019876           96 G-----SSVSLSE-LRQLYHVVVLAYGAESDRALGIPGED--L---IGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAV  163 (334)
Q Consensus        96 ~-----~~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~--~---~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~k~vv  163 (334)
                      +     +.|.+++ ..++||+||||+|+ .+..+++||..  .   +.+-.+..+...+....+... ...+ ..-.+++
T Consensus        82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs-~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~-~~~lti~  159 (405)
T COG1252          82 DIDRDAKKVTLADLGEISYDYLVVALGS-ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDD-RALLTIV  159 (405)
T ss_pred             EEcccCCEEEeCCCccccccEEEEecCC-cCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccc-cceeEEE
Confidence            4     3566666 45799999999999 58888999954  1   222223232222211101000 0000 1224799


Q ss_pred             EEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEccC
Q 019876          164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIRED  240 (334)
Q Consensus       164 VIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~  240 (334)
                      |+|||++|+|+|.+|....+++.....       .... --+|++|++.+++++.|++   +...+.|++.||+|+++..
T Consensus       160 IvGgG~TGVElAgeL~~~~~~l~~~~~-------~~~~-~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~  231 (405)
T COG1252         160 IVGGGPTGVELAGELAERLHRLLKKFR-------VDPS-ELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTP  231 (405)
T ss_pred             EECCChhHHHHHHHHHHHHHHHhhhhc-------CCcc-ccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCc
Confidence            999999999999999862221111000       0011 1269999999999999997   5677789999999999876


Q ss_pred             cc
Q 019876          241 DL  242 (334)
Q Consensus       241 ~~  242 (334)
                      .-
T Consensus       232 Vt  233 (405)
T COG1252         232 VT  233 (405)
T ss_pred             eE
Confidence            53

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.85  E-value=2.4e-20  Score=181.00  Aligned_cols=165  Identities=19%  Similarity=0.237  Sum_probs=119.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc--------------------------------
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV--------------------------------   64 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~--------------------------------   64 (334)
                      ...++|+|||||+|||+||.+|++.|  .+++|||+++.+||.|.+.-                                
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~   85 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC   85 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence            34689999999999999999999997  99999999999999986520                                


Q ss_pred             -----CCC-------------CcchhHHHHHHHHHhhcCCcE--EEeCeEEce--------EEeccc--c---eeccCeE
Q 019876           65 -----APD-------------HPETKIVINQFSRVVQHERCS--FFGNVTLGS--------SVSLSE--L---RQLYHVV  111 (334)
Q Consensus        65 -----~p~-------------~~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~--------~v~~~~--~---~~~yd~l  111 (334)
                           +|.             |+...++.+++..+.+.+++.  +++++.|..        .|+..+  .   +..||+|
T Consensus        86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V  165 (461)
T PLN02172         86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV  165 (461)
T ss_pred             ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence                 111             223357888999999888877  667766521        122221  1   2369999


Q ss_pred             EEeccCC-CCCCCCCCCcc-CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCccccccc
Q 019876          112 VLAYGAE-SDRALGIPGED-LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD  189 (334)
Q Consensus       112 IlATGs~-~p~~~~ipG~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~  189 (334)
                      |+|||.+ .|+.|++||.+ .+|....         ..+++.  .+..++|+|+|||+|++|+|+|..|+.         
T Consensus       166 IvAtG~~~~P~~P~ipG~~~f~G~~iH---------s~~yr~--~~~~~gk~VvVVG~G~Sg~diA~~L~~---------  225 (461)
T PLN02172        166 VVCNGHYTEPNVAHIPGIKSWPGKQIH---------SHNYRV--PDPFKNEVVVVIGNFASGADISRDIAK---------  225 (461)
T ss_pred             EEeccCCCCCcCCCCCCcccCCceEEE---------ecccCC--ccccCCCEEEEECCCcCHHHHHHHHHH---------
Confidence            9999963 48889999975 3442110         011111  122479999999999999999999995         


Q ss_pred             ccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          190 IASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       190 ~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                                  .+++|+++.|++..
T Consensus       226 ------------~a~~V~l~~r~~~~  239 (461)
T PLN02172        226 ------------VAKEVHIASRASES  239 (461)
T ss_pred             ------------hCCeEEEEEeeccc
Confidence                        55789999998643

>PRK07846 mycothione reductase; Reviewed

Probab=99.85  E-value=1e-19  Score=176.84  Aligned_cols=162  Identities=14%  Similarity=0.203  Sum_probs=112.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcch--------------------------hH
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET--------------------------KI   73 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~--------------------------~~   73 (334)
                      ++++|||+||+|+.||..+  .|  .+|+|||++...|.|+++||.|.+.+.                          .+
T Consensus         2 yD~vVIG~G~~g~~aa~~~--~G--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   77 (451)
T PRK07846          2 YDLIIIGTGSGNSILDERF--AD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPD   77 (451)
T ss_pred             CCEEEECCCHHHHHHHHHH--CC--CeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHH
Confidence            6899999999999988653  45  999999997555556666887764211                          11


Q ss_pred             HHHH-------H-----HHH-hhcCCcEEEeCeEE---ceEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccch
Q 019876           74 VINQ-------F-----SRV-VQHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSA  136 (334)
Q Consensus        74 ~~~~-------~-----~~~-~~~~~i~~~~~~~v---~~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~  136 (334)
                      +..+       +     ... ++..+++++.+...   .+.+.+.++ .+.||+||||||+ .|+.|++||.+...+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs-~p~~p~i~g~~~~~~~~~  156 (451)
T PRK07846         78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGS-RPVIPPVIADSGVRYHTS  156 (451)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC-CCCCCCCCCcCCccEEch
Confidence            1111       1     111 44567887766543   234555544 4689999999999 589999999765455544


Q ss_pred             hhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      .++.. +.            ..+++++|||+|++|+|+|..|++                    .|. +||+++|++.++
T Consensus       157 ~~~~~-l~------------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G~-~Vtli~~~~~ll  202 (451)
T PRK07846        157 DTIMR-LP------------ELPESLVIVGGGFIAAEFAHVFSA--------------------LGV-RVTVVNRSGRLL  202 (451)
T ss_pred             HHHhh-hh------------hcCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEEcCCccc
Confidence            43321 10            135899999999999999999986                    565 699999998876


Q ss_pred             cCCC
Q 019876          217 AACT  220 (334)
Q Consensus       217 ~~~~  220 (334)
                      ..++
T Consensus       203 ~~~d  206 (451)
T PRK07846        203 RHLD  206 (451)
T ss_pred             cccC
Confidence            4443

>PRK13748 putative mercuric reductase; Provisional

Probab=99.85  E-value=1.1e-19  Score=181.68  Aligned_cols=163  Identities=23%  Similarity=0.278  Sum_probs=109.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcc--------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPE--------------------------   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~--------------------------   70 (334)
                      ..++|+||||||||++||..|++.|  .+|+|||++ .+||.| +.||.|.+..                          
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~  173 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI  173 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence            3589999999999999999999997  999999997 667655 3366554311                          


Q ss_pred             -hhHHHHH------------HHHHhhcC-CcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCCCCCc
Q 019876           71 -TKIVINQ------------FSRVVQHE-RCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGE  128 (334)
Q Consensus        71 -~~~~~~~------------~~~~~~~~-~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~  128 (334)
                       .+.+..+            +...+... +++++.+....     ..+...++   .+.||+||||||+ .|..|++||.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~  252 (561)
T PRK13748        174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGA-SPAVPPIPGL  252 (561)
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCC
Confidence             1111111            11223333 68877664321     12333332   3689999999999 5888999997


Q ss_pred             cCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEE
Q 019876          129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL  208 (334)
Q Consensus       129 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vti  208 (334)
                      +...+++..+.+.   .          -..+++++|||+|++|+|+|..|++                    .|. +|++
T Consensus       253 ~~~~~~~~~~~~~---~----------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~g~-~Vtl  298 (561)
T PRK13748        253 KETPYWTSTEALV---S----------DTIPERLAVIGSSVVALELAQAFAR--------------------LGS-KVTI  298 (561)
T ss_pred             CccceEccHHHhh---c----------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-EEEE
Confidence            6433333222111   0          0146899999999999999999986                    565 6999


Q ss_pred             EeecCccccCC
Q 019876          209 VGRRGPVQAAC  219 (334)
Q Consensus       209 v~r~~~~~~~~  219 (334)
                      +.|.. ++..+
T Consensus       299 i~~~~-~l~~~  308 (561)
T PRK13748        299 LARST-LFFRE  308 (561)
T ss_pred             EecCc-ccccc
Confidence            99853 44333

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.84  E-value=5.5e-20  Score=178.30  Aligned_cols=188  Identities=16%  Similarity=0.226  Sum_probs=124.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCC----c-chhHHHHH-HHHHhhcCCcEEEeC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH----P-ETKIVINQ-FSRVVQHERCSFFGN   92 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~----~-~~~~~~~~-~~~~~~~~~i~~~~~   92 (334)
                      +++|||||||+||+.||..|++.+++.+|+|||+++..+ ....++ |..    . ...+.... ..+++++.+++++.+
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-~~~~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~   78 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-FANCAL-PYYIGEVVEDRKYALAYTPEKFYDRKQITVKTY   78 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-cccCCc-chhhcCccCCHHHcccCCHHHHHHhCCCEEEeC
Confidence            469999999999999999999987789999999987643 111111 111    0 11122211 234446678998876


Q ss_pred             eEEc------eEEecccc------eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCCCCCCCC
Q 019876           93 VTLG------SSVSLSEL------RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKS  158 (334)
Q Consensus        93 ~~v~------~~v~~~~~------~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~  158 (334)
                      ..|.      +.+.+.+.      ++.||+||||||+ .|+.|++++   +++++..++...  +.....       -..
T Consensus        79 ~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs-~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~-------~~~  147 (438)
T PRK13512         79 HEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA-SANSLGFES---DITFTLRNLEDTDAIDQFIK-------ANQ  147 (438)
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC-CCCCCCCCC---CCeEEecCHHHHHHHHHHHh-------hcC
Confidence            5542      23333221      2589999999999 577666543   345443322211  110000       014


Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEE
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYV  235 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~  235 (334)
                      +++++|||+|++|+|+|..|++                    .|. +||+++++++++..+++   +.+.+.|+..||++
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~--------------------~g~-~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i  206 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYE--------------------RGL-HPTLIHRSDKINKLMDADMNQPILDELDKREIPY  206 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecccccchhcCHHHHHHHHHHHHhcCCEE
Confidence            6899999999999999999986                    565 69999999888776665   56777888899999


Q ss_pred             EEccC
Q 019876          236 HIRED  240 (334)
Q Consensus       236 ~~~~~  240 (334)
                      +++..
T Consensus       207 ~~~~~  211 (438)
T PRK13512        207 RLNEE  211 (438)
T ss_pred             EECCe
Confidence            87643

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.84  E-value=1.8e-19  Score=178.11  Aligned_cols=201  Identities=21%  Similarity=0.268  Sum_probs=141.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--cc--CCC--CcchhHHHHHHHHHhhcCCcEEE
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF   90 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~--~p~--~~~~~~~~~~~~~~~~~~~i~~~   90 (334)
                      ...++|+||||||||++||.+|++.|  ++++||++.  +||.+..  ++  +++  +....++..++.++++..+++++
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G--~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~  284 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKG--IRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM  284 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence            34689999999999999999999997  999999864  6776631  11  111  12345788888888888899998


Q ss_pred             eCeEEce--------EEecccc-eeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCC
Q 019876           91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS  158 (334)
Q Consensus        91 ~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  158 (334)
                      .++.+..        .+.+.++ .+.||+||+|||+ .|+.+++||.+   ..+++.+.        .++     .....
T Consensus       285 ~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~-~~r~~~ipG~~~~~~~~v~~~~--------~~~-----~~~~~  350 (517)
T PRK15317        285 NLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA-RWRNMNVPGEDEYRNKGVAYCP--------HCD-----GPLFK  350 (517)
T ss_pred             cCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC-CcCCCCCCCHHHhcCceEEEee--------ccC-----chhcC
Confidence            7765421        2233333 4689999999999 58888899863   12333221        111     11237


Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR  238 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~  238 (334)
                      +++|+|||+|++|+|+|..|+.                    .+ ++|+++++.+.+..   .                 
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~--------------------~~-~~Vtlv~~~~~l~~---~-----------------  389 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAG--------------------IV-KHVTVLEFAPELKA---D-----------------  389 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--------------------cC-CEEEEEEECccccc---c-----------------
Confidence            8999999999999999999985                    34 57999998875420   0                 


Q ss_pred             cCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                              +.+++.+.        ...||++++++.+++|.  + +++++++|.+.+
T Consensus       390 ------------------------~~l~~~l~--------~~~gI~i~~~~~v~~i~--~-~~g~v~~v~~~~  427 (517)
T PRK15317        390 ------------------------QVLQDKLR--------SLPNVTIITNAQTTEVT--G-DGDKVTGLTYKD  427 (517)
T ss_pred             ------------------------HHHHHHHh--------cCCCcEEEECcEEEEEE--c-CCCcEEEEEEEE
Confidence                                    01122221        24689999999999998  5 347888888764

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.84  E-value=2.6e-20  Score=174.26  Aligned_cols=215  Identities=17%  Similarity=0.236  Sum_probs=158.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC-CccccccccCCCCcc--hhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVRSGVAPDHPE--TKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~-~gg~~~~~~~p~~~~--~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ..+.++|||+|++|..|+.++++.++..+++++-++.. ++...+   .|.+..  .+.+..+..+++++.+|+++.++.
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~---Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~  149 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRAR---LSKFLLTVGEGLAKRTPEFYKEKGIELILGTS  149 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchh---cccceeeccccccccChhhHhhcCceEEEcce
Confidence            46799999999999999999999998889999986543 222211   122211  224455566788999999999987


Q ss_pred             Ec------eEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 019876           95 LG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ  167 (334)
Q Consensus        95 v~------~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~  167 (334)
                      +.      +++...+++ .+|++++||||+ +++.|++||.+.+++++.++....       ..+...+..+.+|+++|+
T Consensus       150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs-~~~~l~~pG~~~~nv~~ireieda-------~~l~~~~~~~~~vV~vG~  221 (478)
T KOG1336|consen  150 VVKADLASKTLVLGNGETLKYSKLIIATGS-SAKTLDIPGVELKNVFYLREIEDA-------NRLVAAIQLGGKVVCVGG  221 (478)
T ss_pred             eEEeeccccEEEeCCCceeecceEEEeecC-ccccCCCCCccccceeeeccHHHH-------HHHHHHhccCceEEEECc
Confidence            63      344454444 589999999999 699999999999999888766532       111222335789999999


Q ss_pred             CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCC
Q 019876          168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT  247 (334)
Q Consensus       168 G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~  247 (334)
                      |++|+|+|..|..                     ..++||+|++.+..+.++....+++                     
T Consensus       222 G~ig~Evaa~l~~---------------------~~~~VT~V~~e~~~~~~lf~~~i~~---------------------  259 (478)
T KOG1336|consen  222 GFIGMEVAAALVS---------------------KAKSVTVVFPEPWLLPRLFGPSIGQ---------------------  259 (478)
T ss_pred             hHHHHHHHHHHHh---------------------cCceEEEEccCccchhhhhhHHHHH---------------------
Confidence            9999999999995                     5678999999987764433222221                     


Q ss_pred             chhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                                      .+.+.+         .++||+|++++.+.++.  ++.+|++..|.+.+.
T Consensus       260 ----------------~~~~y~---------e~kgVk~~~~t~~s~l~--~~~~Gev~~V~l~dg  297 (478)
T KOG1336|consen  260 ----------------FYEDYY---------ENKGVKFYLGTVVSSLE--GNSDGEVSEVKLKDG  297 (478)
T ss_pred             ----------------HHHHHH---------HhcCeEEEEecceeecc--cCCCCcEEEEEeccC
Confidence                            122222         37899999999999998  655689999999875

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.84  E-value=1.9e-19  Score=177.77  Aligned_cols=201  Identities=21%  Similarity=0.285  Sum_probs=139.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--cc--CCC--CcchhHHHHHHHHHhhcCCcEEE
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF   90 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~--~p~--~~~~~~~~~~~~~~~~~~~i~~~   90 (334)
                      ...++|+||||||||++||.+|++.+  .+|+||+.  .+||.+..  ++  .+.  +....++...+.++++..+++++
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~  285 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM  285 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence            35689999999999999999999987  99999975  46776532  11  011  12345677788888888899998


Q ss_pred             eCeEEc--------eEEecccc-eeccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCC
Q 019876           91 GNVTLG--------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS  158 (334)
Q Consensus        91 ~~~~v~--------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  158 (334)
                      .+..+.        ..+.+.++ .+.||+||+|||+ .|+.+++||.+   ..+++.+.        .++     ..+..
T Consensus       286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa-~~~~~~ipG~~~~~~~~v~~~~--------~~~-----~~~~~  351 (515)
T TIGR03140       286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA-RWRKLGVPGEKEYIGKGVAYCP--------HCD-----GPFFK  351 (515)
T ss_pred             cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC-CcCCCCCCCHHHcCCCeEEEee--------ccC-----hhhcC
Confidence            876542        12333333 3689999999999 48888999853   12332221        111     11236


Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR  238 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~  238 (334)
                      +++|+|||||++|+|+|..|+.                    .+ ++||++++.+.+..   .+                
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~--------------------~g-~~Vtli~~~~~l~~---~~----------------  391 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAG--------------------IV-RHVTVLEFADELKA---DK----------------  391 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--------------------cC-cEEEEEEeCCcCCh---hH----------------
Confidence            8999999999999999999985                    44 57999998765420   00                


Q ss_pred             cCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                               .+.+.+.        ...||+|++++.+++|.  + +++++++|.+.+
T Consensus       392 -------------------------~l~~~l~--------~~~gV~i~~~~~v~~i~--~-~~~~v~~v~~~~  428 (515)
T TIGR03140       392 -------------------------VLQDKLK--------SLPNVDILTSAQTTEIV--G-DGDKVTGIRYQD  428 (515)
T ss_pred             -------------------------HHHHHHh--------cCCCCEEEECCeeEEEE--c-CCCEEEEEEEEE
Confidence                                     1122221        13589999999999997  6 346788887764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.84  E-value=3.2e-20  Score=161.13  Aligned_cols=156  Identities=25%  Similarity=0.323  Sum_probs=101.1

Q ss_pred             EEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCCcccccc-c----c-CCC---------------------------C
Q 019876           23 CVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRS-G----V-APD---------------------------H   68 (334)
Q Consensus        23 vIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~gg~~~~-~----~-~p~---------------------------~   68 (334)
                      +||||||+|+++|.+|.+.+  .+ ++|||+++.+||.|.. .    + .|.                           +
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g--~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERG--IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred             CEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence            69999999999999999997  77 9999999999987742 0    0 111                           1


Q ss_pred             cchhHHHHHHHHHhhcCCcEEEeCeEEce--------EEecccc-eeccCeEEEeccCC-CCCCCCCCC-ccCCCccchh
Q 019876           69 PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE-SDRALGIPG-EDLIGVHSAR  137 (334)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~-~p~~~~ipG-~~~~~v~~~~  137 (334)
                      ...+++.+++..+.+++++++++++.|..        .+++.+. .+.+|+||+|||.. .|+.|.+|| .+. .+++..
T Consensus        79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~  157 (203)
T PF13738_consen   79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSA  157 (203)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGG
T ss_pred             CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehh
Confidence            12235678888888889999888877632        3555555 56899999999973 488889999 433 333332


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ++.    ...        -.++++|+|||+|++|+|+|..|++                    .+ ++|+++.|++.
T Consensus       158 ~~~----~~~--------~~~~k~V~VVG~G~SA~d~a~~l~~--------------------~g-~~V~~~~R~~~  201 (203)
T PF13738_consen  158 DWR----DPE--------DFKGKRVVVVGGGNSAVDIAYALAK--------------------AG-KSVTLVTRSPI  201 (203)
T ss_dssp             G-S----TTG--------GCTTSEEEEE--SHHHHHHHHHHTT--------------------TC-SEEEEEESS--
T ss_pred             hcC----Chh--------hcCCCcEEEEcChHHHHHHHHHHHh--------------------hC-CEEEEEecCCC
Confidence            221    111        1267999999999999999999996                    55 68999999864

...

>PRK14727 putative mercuric reductase; Provisional

Probab=99.84  E-value=2.5e-19  Score=175.59  Aligned_cols=164  Identities=19%  Similarity=0.241  Sum_probs=109.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcc--------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPE--------------------------   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~--------------------------   70 (334)
                      .+++++|||+||+|+++|..|++.+  .+|+|+|+.+.+||.|.+ ||.|.+.+                          
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   92 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID   92 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence            4589999999999999999999997  899999998777876644 66554311                          


Q ss_pred             hhHHH-------HH-----HHHHhhcC-CcEEEeCeEE--c-e--EEecccc---eeccCeEEEeccCCCCCCCCCCCcc
Q 019876           71 TKIVI-------NQ-----FSRVVQHE-RCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGED  129 (334)
Q Consensus        71 ~~~~~-------~~-----~~~~~~~~-~i~~~~~~~v--~-~--~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~  129 (334)
                      ...+.       .+     +...++.. +++++.+...  + .  .+...++   ++.||+||||||+ .|+.|++||.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~p~i~G~~  171 (479)
T PRK14727         93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS-TPTIPPIPGLM  171 (479)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC-CCCCCCCCCcC
Confidence            00111       11     12223322 6777655432  1 1  2333332   4689999999999 59999999975


Q ss_pred             CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEE
Q 019876          130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV  209 (334)
Q Consensus       130 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv  209 (334)
                      ...+++..+.+   ..          -..+++++|||+|++|+|+|..|.+                    .|. +||++
T Consensus       172 ~~~~~~~~~~l---~~----------~~~~k~vvVIGgG~iG~E~A~~l~~--------------------~G~-~Vtlv  217 (479)
T PRK14727        172 DTPYWTSTEAL---FS----------DELPASLTVIGSSVVAAEIAQAYAR--------------------LGS-RVTIL  217 (479)
T ss_pred             ccceecchHHh---cc----------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-EEEEE
Confidence            43333322211   00          0145899999999999999999986                    565 69999


Q ss_pred             eecCccccCC
Q 019876          210 GRRGPVQAAC  219 (334)
Q Consensus       210 ~r~~~~~~~~  219 (334)
                      ++. .++..+
T Consensus       218 ~~~-~~l~~~  226 (479)
T PRK14727        218 ARS-TLLFRE  226 (479)
T ss_pred             EcC-CCCCcc
Confidence            875 444333

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.84  E-value=2.3e-19  Score=188.92  Aligned_cols=201  Identities=24%  Similarity=0.204  Sum_probs=142.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc--CCCCcchhHHHHHHHHHhhcC-CcEEEeCeEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV--APDHPETKIVINQFSRVVQHE-RCSFFGNVTL   95 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~--~p~~~~~~~~~~~~~~~~~~~-~i~~~~~~~v   95 (334)
                      .++|+|||||||||+||.++++.+  .+|+|||+.+.+||.+.+..  .++. ...++...+.+.+... +++++.++.+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G--~~V~liD~~~~~GG~~~~~~~~~~g~-~~~~~~~~~~~~l~~~~~v~v~~~t~V  239 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAG--ARVILVDEQPEAGGSLLSEAETIDGK-PAADWAAATVAELTAMPEVTLLPRTTA  239 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCeeeccccccCCc-cHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence            578999999999999999999987  99999999999998876421  1221 2234434454555544 5888876544


Q ss_pred             ce-----------EEe----------cccc--eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCC
Q 019876           96 GS-----------SVS----------LSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNL  152 (334)
Q Consensus        96 ~~-----------~v~----------~~~~--~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~  152 (334)
                      ..           ...          ..+.  .+.||+||||||+ .++.|++||.+.++|++.......+...      
T Consensus       240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa-~~r~~pipG~~~pgV~~~~~~~~~l~~~------  312 (985)
T TIGR01372       240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA-HERPLVFANNDRPGVMLAGAARTYLNRY------  312 (985)
T ss_pred             EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC-CCcCCCCCCCCCCCcEEchHHHHHHHhh------
Confidence            11           000          0011  3579999999999 5899999999999999875544332211      


Q ss_pred             CCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCc
Q 019876          153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKN  232 (334)
Q Consensus       153 ~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~g  232 (334)
                        ....+++|+|||+|++|+|+|..|++                    .|.+.|+|+++++.+.     ..         
T Consensus       313 --~~~~gk~VvViG~G~~g~e~A~~L~~--------------------~G~~vV~vv~~~~~~~-----~~---------  356 (985)
T TIGR01372       313 --GVAPGKRIVVATNNDSAYRAAADLLA--------------------AGIAVVAIIDARADVS-----PE---------  356 (985)
T ss_pred             --CcCCCCeEEEECCCHHHHHHHHHHHH--------------------cCCceEEEEccCcchh-----HH---------
Confidence              12368999999999999999999986                    6777799998765331     00         


Q ss_pred             eEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876          233 LYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                                                      +.+.+         ++.||++++++.+++|.  +  ++++++|++.
T Consensus       357 --------------------------------l~~~L---------~~~GV~i~~~~~v~~i~--g--~~~v~~V~l~  389 (985)
T TIGR01372       357 --------------------------------ARAEA---------RELGIEVLTGHVVAATE--G--GKRVSGVAVA  389 (985)
T ss_pred             --------------------------------HHHHH---------HHcCCEEEcCCeEEEEe--c--CCcEEEEEEE
Confidence                                            11111         25689999999999998  6  5678888876

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.83  E-value=2e-19  Score=175.78  Aligned_cols=163  Identities=17%  Similarity=0.281  Sum_probs=106.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchh--HHHHHHHH----------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETK--IVINQFSR----------------   80 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~--~~~~~~~~----------------   80 (334)
                      .++|+||||||||++||.+|++.+  .+|+|||++...|.+...||.|.+....  ++...+..                
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G--~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~   81 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG   81 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence            479999999999999999999997  9999999875445555668878653321  11111111                


Q ss_pred             -------------------HhhcCCcEEEeCeE--Ec-eEEec--ccc---eeccCeEEEeccCCCCCCCCCCCccC-CC
Q 019876           81 -------------------VVQHERCSFFGNVT--LG-SSVSL--SEL---RQLYHVVVLAYGAESDRALGIPGEDL-IG  132 (334)
Q Consensus        81 -------------------~~~~~~i~~~~~~~--v~-~~v~~--~~~---~~~yd~lIlATGs~~p~~~~ipG~~~-~~  132 (334)
                                         .++..+++.+.+..  ++ ..+.+  .++   .+.||+||||||+ .|+.+  ||.+. ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~--pg~~~~~~  158 (466)
T PRK07818         82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGS-STRLL--PGTSLSEN  158 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCC-CCCCC--CCCCCCCc
Confidence                               11223455544321  11 12222  222   4689999999999 47653  56542 23


Q ss_pred             ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      +++..+..   . .         -..+++|+|||+|++|+|+|..|++                    .|. +|+++++.
T Consensus       159 v~~~~~~~---~-~---------~~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G~-~Vtlv~~~  204 (466)
T PRK07818        159 VVTYEEQI---L-S---------RELPKSIVIAGAGAIGMEFAYVLKN--------------------YGV-DVTIVEFL  204 (466)
T ss_pred             EEchHHHh---c-c---------ccCCCeEEEECCcHHHHHHHHHHHH--------------------cCC-eEEEEecC
Confidence            44433211   0 0         0146899999999999999999986                    565 69999999


Q ss_pred             CccccCCC
Q 019876          213 GPVQAACT  220 (334)
Q Consensus       213 ~~~~~~~~  220 (334)
                      +++++.++
T Consensus       205 ~~~l~~~d  212 (466)
T PRK07818        205 DRALPNED  212 (466)
T ss_pred             CCcCCccC
Confidence            87765543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.83  E-value=7.4e-19  Score=171.53  Aligned_cols=160  Identities=21%  Similarity=0.285  Sum_probs=106.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCc--------------------------ch
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHP--------------------------ET   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~--------------------------~~   71 (334)
                      .++|+||||||+|++||.+|.+.+  .+|+|||+ +.+||.+. .||.|.+.                          ..
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~   79 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLG--KKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDF   79 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCC--CeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCH
Confidence            479999999999999999999987  99999999 56777553 35544321                          11


Q ss_pred             hHHHHHHH------------HHhhcCCcEEEeCeEE---ceEEecccceeccCeEEEeccCCCCCCCCCCCcc---CCCc
Q 019876           72 KIVINQFS------------RVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGV  133 (334)
Q Consensus        72 ~~~~~~~~------------~~~~~~~i~~~~~~~v---~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~---~~~v  133 (334)
                      +++..+..            ..++..+++++.+...   ...+.++...+.||+||||||+ .  .|++||.+   ...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs-~--~p~ipg~~~~~~~~~  156 (460)
T PRK06292         80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGS-R--VPPIPGVWLILGDRL  156 (460)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCC-C--CCCCCCCcccCCCcE
Confidence            22222221            1233446776654321   1233443345789999999999 4  45677753   2334


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++..+...    .         -..+++++|||+|.+|+|+|..|.+                    .|. +|++++|.+
T Consensus       157 ~~~~~~~~----~---------~~~~k~v~VIGgG~~g~E~A~~l~~--------------------~g~-~Vtli~~~~  202 (460)
T PRK06292        157 LTSDDAFE----L---------DKLPKSLAVIGGGVIGLELGQALSR--------------------LGV-KVTVFERGD  202 (460)
T ss_pred             ECchHHhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecCC
Confidence            44332221    1         0246899999999999999999986                    675 599999998


Q ss_pred             ccccC
Q 019876          214 PVQAA  218 (334)
Q Consensus       214 ~~~~~  218 (334)
                      .++..
T Consensus       203 ~~l~~  207 (460)
T PRK06292        203 RILPL  207 (460)
T ss_pred             CcCcc
Confidence            77543

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.83  E-value=4.7e-20  Score=181.38  Aligned_cols=161  Identities=27%  Similarity=0.390  Sum_probs=109.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc---------c-----------------------CCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG---------V-----------------------APD   67 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~---------~-----------------------~p~   67 (334)
                      ++|+|||||++||++|..|++.|  +++++||+++.+||.|.+.         +                       .|.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~   79 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPD   79 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCC--CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCC
Confidence            69999999999999999999997  9999999999999999641         1                       123


Q ss_pred             CcchhHHHHHHHHHhhcCCc--EEEeCeEEce-------------EEecc-cc---eeccCeEEEeccCCC-CCCCC--C
Q 019876           68 HPETKIVINQFSRVVQHERC--SFFGNVTLGS-------------SVSLS-EL---RQLYHVVVLAYGAES-DRALG--I  125 (334)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~-------------~v~~~-~~---~~~yd~lIlATGs~~-p~~~~--i  125 (334)
                      ++...++.+|+..+.+++++  .+++++.|..             .|+.. ++   +..||+||+|||.+. |+.|.  +
T Consensus        80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~  159 (531)
T PF00743_consen   80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF  159 (531)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred             CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence            34456889999999988876  3666766521             12221 12   136999999999854 77663  8


Q ss_pred             CCcc-CCC-ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc
Q 019876          126 PGED-LIG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI  203 (334)
Q Consensus       126 pG~~-~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~  203 (334)
                      ||.+ .+| ++++.+|.    ..        ...++|+|+|||+|++|+|+|..|+.                     -+
T Consensus       160 ~G~e~F~G~i~HS~~yr----~~--------~~f~gKrVlVVG~g~Sg~DIa~el~~---------------------~a  206 (531)
T PF00743_consen  160 PGLEKFKGEIIHSKDYR----DP--------EPFKGKRVLVVGGGNSGADIAVELSR---------------------VA  206 (531)
T ss_dssp             CTGGGHCSEEEEGGG------TG--------GGGTTSEEEEESSSHHHHHHHHHHTT---------------------TS
T ss_pred             hhhhcCCeeEEccccCc----Ch--------hhcCCCEEEEEeCCHhHHHHHHHHHH---------------------hc
Confidence            8875 233 33333332    11        12389999999999999999999996                     56


Q ss_pred             ceEEEEeecCcc
Q 019876          204 RKVYLVGRRGPV  215 (334)
Q Consensus       204 ~~Vtiv~r~~~~  215 (334)
                      ++|++..|++.+
T Consensus       207 ~~v~~s~R~~~w  218 (531)
T PF00743_consen  207 KKVYLSTRRGAW  218 (531)
T ss_dssp             CCEEEECC----
T ss_pred             CCeEEEEecccc
Confidence            679999998654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.82  E-value=1e-18  Score=171.16  Aligned_cols=163  Identities=17%  Similarity=0.253  Sum_probs=109.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC--------CCccc-cccccCCCCcchh-----------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHPETK-----------------   72 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~--------~~gg~-~~~~~~p~~~~~~-----------------   72 (334)
                      .++|+|||+||+|+.||..+++.+  .+|++||+..        ..||. ++.||.|.+.+..                 
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G--~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~   79 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYG--AKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN   79 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence            369999999999999999999997  9999999731        35665 4557877543211                 


Q ss_pred             ----------HH-----------HHHHHHHhhcCCcEEEeCeEE--c-eEEecc--c---ceeccCeEEEeccCCCCCCC
Q 019876           73 ----------IV-----------INQFSRVVQHERCSFFGNVTL--G-SSVSLS--E---LRQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        73 ----------~~-----------~~~~~~~~~~~~i~~~~~~~v--~-~~v~~~--~---~~~~yd~lIlATGs~~p~~~  123 (334)
                                .+           ...+...++..+++++.+...  + ..+.+.  +   ..+.||+||||||+ .|+.|
T Consensus        80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~~p  158 (484)
T TIGR01438        80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGE-RPRYP  158 (484)
T ss_pred             cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCC-CCCCC
Confidence                      00           111223455667887766442  1 223322  2   24689999999999 68889


Q ss_pred             CCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc
Q 019876          124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI  203 (334)
Q Consensus       124 ~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~  203 (334)
                      ++||.+.. .++..++..    ..         ...++++|||+|++|+|+|..|++                    .|.
T Consensus       159 ~ipG~~~~-~~~~~~~~~----~~---------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G~  204 (484)
T TIGR01438       159 GIPGAKEL-CITSDDLFS----LP---------YCPGKTLVVGASYVALECAGFLAG--------------------IGL  204 (484)
T ss_pred             CCCCccce-eecHHHhhc----cc---------ccCCCEEEECCCHHHHHHHHHHHH--------------------hCC
Confidence            99987422 233322221    11         135789999999999999999986                    565


Q ss_pred             ceEEEEeecCccccCCC
Q 019876          204 RKVYLVGRRGPVQAACT  220 (334)
Q Consensus       204 ~~Vtiv~r~~~~~~~~~  220 (334)
                       +||++.| +.++..++
T Consensus       205 -~Vtli~~-~~~l~~~d  219 (484)
T TIGR01438       205 -DVTVMVR-SILLRGFD  219 (484)
T ss_pred             -cEEEEEe-cccccccC
Confidence             6999987 45554444

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.82  E-value=1e-18  Score=171.12  Aligned_cols=165  Identities=17%  Similarity=0.240  Sum_probs=107.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcC------CCCCcccc-ccccCCCCcchh-------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR------LPTPFGLV-RSGVAPDHPETK-------------------   72 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~------~~~~gg~~-~~~~~p~~~~~~-------------------   72 (334)
                      .++++|||+||||++||.++++.+  .+|+|+|+      ...+||.+ +++|.|.+....                   
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g--~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~   81 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLG--LKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV   81 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCC--CeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence            579999999999999999999997  99999998      23456654 446655421100                   


Q ss_pred             --------HHH-----------HHHHHHhhcCCcEEEeCeEE--c-----eEEecc--c-ceeccCeEEEeccCCCCCCC
Q 019876           73 --------IVI-----------NQFSRVVQHERCSFFGNVTL--G-----SSVSLS--E-LRQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        73 --------~~~-----------~~~~~~~~~~~i~~~~~~~v--~-----~~v~~~--~-~~~~yd~lIlATGs~~p~~~  123 (334)
                              .+.           ..+...++..+++++.+...  +     ..+.+.  + ..+.||+||||||+ .|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs-~p~~~  160 (475)
T PRK06327         82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGS-EPRHL  160 (475)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCC-CCCCC
Confidence                    001           11223344567887765432  1     234332  1 25689999999999 47654


Q ss_pred             CCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc
Q 019876          124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI  203 (334)
Q Consensus       124 ~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~  203 (334)
                      +..+.+...++++.....    .         -..+++|+|||+|++|+|+|..|++                    .+.
T Consensus       161 p~~~~~~~~~~~~~~~~~----~---------~~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g~  207 (475)
T PRK06327        161 PGVPFDNKIILDNTGALN----F---------TEVPKKLAVIGAGVIGLELGSVWRR--------------------LGA  207 (475)
T ss_pred             CCCCCCCceEECcHHHhc----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cCC
Confidence            322222333444332221    1         0146899999999999999999986                    565


Q ss_pred             ceEEEEeecCccccCCC
Q 019876          204 RKVYLVGRRGPVQAACT  220 (334)
Q Consensus       204 ~~Vtiv~r~~~~~~~~~  220 (334)
                       +||++++++.++..++
T Consensus       208 -~Vtli~~~~~~l~~~d  223 (475)
T PRK06327        208 -EVTILEALPAFLAAAD  223 (475)
T ss_pred             -eEEEEeCCCccCCcCC
Confidence             6999999987754443

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.82  E-value=1.4e-19  Score=176.64  Aligned_cols=215  Identities=20%  Similarity=0.275  Sum_probs=159.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCC-CCeEEEEcCCCCC-ccccc-cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTP-FGLVR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~-~~~v~vie~~~~~-gg~~~-~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      .+++||||.|++|..+...++...| .++|++|..++++ +..+. ..+.++....+++...-.+|+++++|+++.+..+
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            5799999999999999999988544 4899999988775 22211 1234554455666666678899999999998776


Q ss_pred             c------eEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCC
Q 019876           96 G------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG  168 (334)
Q Consensus        96 ~------~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G  168 (334)
                      .      +.|..+.+. ..||+||+|||| .|+.+|+||.+.++++..+++...+. ..++      -...++.+|||||
T Consensus        83 ~~idr~~k~V~t~~g~~~~YDkLilATGS-~pfi~PiPG~~~~~v~~~R~i~D~~a-m~~~------ar~~~~avVIGGG  154 (793)
T COG1251          83 IQIDRANKVVTTDAGRTVSYDKLIIATGS-YPFILPIPGSDLPGVFVYRTIDDVEA-MLDC------ARNKKKAVVIGGG  154 (793)
T ss_pred             EEeccCcceEEccCCcEeecceeEEecCc-cccccCCCCCCCCCeeEEecHHHHHH-HHHH------HhccCCcEEEccc
Confidence            2      345555444 589999999999 59999999999999998887764322 1111      1245668999999


Q ss_pred             HHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCc
Q 019876          169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD  248 (334)
Q Consensus       169 ~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~  248 (334)
                      ..|+|+|..|.+                    .|. +|++++-.+.++.                             .+
T Consensus       155 LLGlEaA~~L~~--------------------~Gm-~~~Vvh~~~~lMe-----------------------------rQ  184 (793)
T COG1251         155 LLGLEAARGLKD--------------------LGM-EVTVVHIAPTLME-----------------------------RQ  184 (793)
T ss_pred             hhhhHHHHHHHh--------------------CCC-ceEEEeecchHHH-----------------------------Hh
Confidence            999999999996                    676 5999998887631                             11


Q ss_pred             hhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                      ++..        -.++|+..+         .+.||+|++++.+++|.  +  ++++++|+|++.
T Consensus       185 LD~~--------ag~lL~~~l---------e~~Gi~~~l~~~t~ei~--g--~~~~~~vr~~DG  227 (793)
T COG1251         185 LDRT--------AGRLLRRKL---------EDLGIKVLLEKNTEEIV--G--EDKVEGVRFADG  227 (793)
T ss_pred             hhhH--------HHHHHHHHH---------Hhhcceeecccchhhhh--c--CcceeeEeecCC
Confidence            1111        123444443         37899999999999998  7  789999999875

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.82  E-value=1.3e-18  Score=174.60  Aligned_cols=165  Identities=14%  Similarity=0.107  Sum_probs=111.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC-CCCccc-cccccCCCCcchh------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFGL-VRSGVAPDHPETK------------------------   72 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~-~~~gg~-~~~~~~p~~~~~~------------------------   72 (334)
                      .++|+|||+||+|+.||..+++.|  .+|+|||+. +.+||. ++.||.|.+.+..                        
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G--~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~  193 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERG--LKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF  193 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence            579999999999999999999997  999999974 345654 4557777643211                        


Q ss_pred             -----------------------HHHH-----------HHHHHhhcCC-------cEEEeCeEE--c-eEEec--cccee
Q 019876           73 -----------------------IVIN-----------QFSRVVQHER-------CSFFGNVTL--G-SSVSL--SELRQ  106 (334)
Q Consensus        73 -----------------------~~~~-----------~~~~~~~~~~-------i~~~~~~~v--~-~~v~~--~~~~~  106 (334)
                                             .+..           .+...++..+       ++++.+...  + .++.+  ...++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i  273 (659)
T PTZ00153        194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEF  273 (659)
T ss_pred             cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEE
Confidence                                   0000           0112222222       455444321  1 12322  22346


Q ss_pred             ccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccc
Q 019876          107 LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELA  186 (334)
Q Consensus       107 ~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~  186 (334)
                      .||+||||||+ .|..|++++.+.++++++.+... +.            ..+++|+|||+|++|+|+|..|+.      
T Consensus       274 ~ad~lIIATGS-~P~~P~~~~~~~~~V~ts~d~~~-l~------------~lpk~VvIVGgG~iGvE~A~~l~~------  333 (659)
T PTZ00153        274 KVKNIIIATGS-TPNIPDNIEVDQKSVFTSDTAVK-LE------------GLQNYMGIVGMGIIGLEFMDIYTA------  333 (659)
T ss_pred             ECCEEEEcCCC-CCCCCCCCCCCCCcEEehHHhhh-hh------------hcCCceEEECCCHHHHHHHHHHHh------
Confidence            89999999999 58887777766667877655432 11            136899999999999999999886      


Q ss_pred             cccccHHHHHHHhcCCcceEEEEeecCccccCCC
Q 019876          187 TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT  220 (334)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~  220 (334)
                                    .|. +||++++.+.++..++
T Consensus       334 --------------~G~-eVTLIe~~~~ll~~~d  352 (659)
T PTZ00153        334 --------------LGS-EVVSFEYSPQLLPLLD  352 (659)
T ss_pred             --------------CCC-eEEEEeccCcccccCC
Confidence                          565 6999999988765443

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.82  E-value=1.6e-18  Score=170.42  Aligned_cols=181  Identities=14%  Similarity=0.206  Sum_probs=113.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC--------CCccc-cccccCCCCcc-------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHPE-------------------   70 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~--------~~gg~-~~~~~~p~~~~-------------------   70 (334)
                      .++|+||||||||++||.++.+.+  .+|+|+|+..        .+||. ++.||.|.+..                   
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~   82 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW   82 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence            479999999999999999999997  9999999631        35665 45577775311                   


Q ss_pred             -------hhHHHHHHHHH-----------hhcCCcEEEeCeEE---ceEEeccc----ceeccCeEEEeccCCCCCCC-C
Q 019876           71 -------TKIVINQFSRV-----------VQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRAL-G  124 (334)
Q Consensus        71 -------~~~~~~~~~~~-----------~~~~~i~~~~~~~v---~~~v~~~~----~~~~yd~lIlATGs~~p~~~-~  124 (334)
                             ..++.+++...           ++..+|+++.+...   .+.+.+.+    ..+.||+||||||+ .|+.| +
T Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs-~p~~p~~  161 (499)
T PTZ00052         83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG-RPSIPED  161 (499)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC-CCCCCCC
Confidence                   11222222222           22346666554322   12333321    24689999999999 57766 4


Q ss_pred             CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc
Q 019876          125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR  204 (334)
Q Consensus       125 ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (334)
                      +||.+.. .++..++..    .         ...+++++|||+|++|+|+|..|++                    .|. 
T Consensus       162 i~G~~~~-~~~~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G~-  206 (499)
T PTZ00052        162 VPGAKEY-SITSDDIFS----L---------SKDPGKTLIVGASYIGLETAGFLNE--------------------LGF-  206 (499)
T ss_pred             CCCccce-eecHHHHhh----h---------hcCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-
Confidence            8886532 233333221    0         0135799999999999999999996                    675 


Q ss_pred             eEEEEeecCccccCCCH---HHHHHHHcCCceEEEEc
Q 019876          205 KVYLVGRRGPVQAACTA---KELREILGIKNLYVHIR  238 (334)
Q Consensus       205 ~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~  238 (334)
                      +||++.+. .++..+++   +.+.+.|+..||+++++
T Consensus       207 ~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~~~  242 (499)
T PTZ00052        207 DVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFLEG  242 (499)
T ss_pred             cEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEEcC
Confidence            59999874 44444443   23333333444444433

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.82  E-value=2.4e-19  Score=169.81  Aligned_cols=199  Identities=16%  Similarity=0.230  Sum_probs=129.1

Q ss_pred             eEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCCC-ccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876           21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--   96 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~~-gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--   96 (334)
                      +|||||||+||+.+|..|+++ .++.+|+|||+++.. +.........+.....++...+.++++..+++|+.+..+.  
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id   80 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID   80 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence            589999999999999999755 457999999998753 1111111111222334565566777778899998875543  


Q ss_pred             ---eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhh---HHHHhcCCCCCCCCCCCCCCCCeEEEEcCCH
Q 019876           97 ---SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSARE---FVWWYNGHPDGKNLSPDLKSTDTAVILGQGN  169 (334)
Q Consensus        97 ---~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~  169 (334)
                         ..+.+.++ +++||+||||||+ .|..|++||. .++++..+.   +...+....+.  . .....+++|+|||+|.
T Consensus        81 ~~~~~V~~~~g~~~~yD~LviAtG~-~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~vvVvG~G~  155 (364)
T TIGR03169        81 PDRRKVLLANRPPLSYDVLSLDVGS-TTPLSGVEGA-ADLAVPVKPIENFLARWEALLES--A-DAPPGTKRLAVVGGGA  155 (364)
T ss_pred             cccCEEEECCCCcccccEEEEccCC-CCCCCCCCcc-cccccccCCHHHHHHHHHHHHHH--H-hcCCCCceEEEECCCH
Confidence               23445544 4689999999999 5888899984 334433222   11100000000  0 0012467999999999


Q ss_pred             HHHHHHHHHccCCcccccccccHHHHHHHhcCCc-ceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEccCc
Q 019876          170 VALDVARILLRPTEELATTDIASYAWTALEGSSI-RKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIREDD  241 (334)
Q Consensus       170 ~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~~  241 (334)
                      +|+|+|..|++                .+++.+. .+|+++ +.+.++..+.+   +.+.+.|+..||+++.+...
T Consensus       156 ~g~E~A~~l~~----------------~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v  214 (364)
T TIGR03169       156 AGVEIALALRR----------------RLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPV  214 (364)
T ss_pred             HHHHHHHHHHH----------------HHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCee
Confidence            99999999974                1112332 379999 66666665543   56777888999999987544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.80  E-value=1.4e-18  Score=167.84  Aligned_cols=215  Identities=15%  Similarity=0.100  Sum_probs=131.9

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc-cccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g-g~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ..++++|||||||+||+.+|..|.+.  +.+|+||++++... ..+.+....+.....++...+...+...+++++.+..
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~--~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V   84 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPK--KYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVV   84 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcC--CCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEE
Confidence            34567999999999999999998654  48999999987631 1111111122223445656667777777888887755


Q ss_pred             Ec-----eEEec----------ccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHH------HHhcCC---CCC
Q 019876           95 LG-----SSVSL----------SEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV------WWYNGH---PDG  149 (334)
Q Consensus        95 v~-----~~v~~----------~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~------~~~~~~---~~~  149 (334)
                      ..     +.+.+          .++ +++||+||||||+ .+..+++||.+. .++....+.      ..+...   .+.
T Consensus        85 ~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs-~~~~~~ipG~~e-~~~~~~~~~~a~~~~~~l~~~~~~~~~  162 (424)
T PTZ00318         85 YDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA-RPNTFNIPGVEE-RAFFLKEVNHARGIRKRIVQCIERASL  162 (424)
T ss_pred             EEEEcCCCEEEEecccccccccCCceEecCCEEEECCCc-ccCCCCCCCHHH-cCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            42     23333          223 4699999999999 588889999752 222222211      111000   000


Q ss_pred             CCC-CCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHH
Q 019876          150 KNL-SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELR  225 (334)
Q Consensus       150 ~~~-~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~  225 (334)
                      ... ....+..++++|||+|++|+|+|..|+....+.     .......+ +.+ .+|+++++.+.++..++.   +.+.
T Consensus       163 ~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~-----~~~~~~~~-~~~-~~Vtlv~~~~~ll~~~~~~~~~~~~  235 (424)
T PTZ00318        163 PTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDD-----VRNLNPEL-VEE-CKVTVLEAGSEVLGSFDQALRKYGQ  235 (424)
T ss_pred             CCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHH-----HHhhhhcc-ccc-CEEEEEcCCCcccccCCHHHHHHHH
Confidence            000 000113369999999999999999987410000     00000000 023 469999999888877754   5667


Q ss_pred             HHHcCCceEEEEccCc
Q 019876          226 EILGIKNLYVHIREDD  241 (334)
Q Consensus       226 ~~l~~~gv~~~~~~~~  241 (334)
                      +.|+..||+++++...
T Consensus       236 ~~L~~~gV~v~~~~~v  251 (424)
T PTZ00318        236 RRLRRLGVDIRTKTAV  251 (424)
T ss_pred             HHHHHCCCEEEeCCeE
Confidence            7889999999987644

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=8.9e-19  Score=157.39  Aligned_cols=199  Identities=22%  Similarity=0.296  Sum_probs=144.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--cc-----CCCCcchhHHHHHHHHHhhcCCcEEE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV-----APDHPETKIVINQFSRVVQHERCSFF   90 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~-----~p~~~~~~~~~~~~~~~~~~~~i~~~   90 (334)
                      ..++|+|||+||||.+||.|.+++|  .+.-++-.  ..||+..-  ++     .|. ....++...+.++.+++.+++.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKG--iRTGl~ae--rfGGQvldT~~IENfIsv~~-teGpkl~~ale~Hv~~Y~vDim  284 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKG--IRTGLVAE--RFGGQVLDTMGIENFISVPE-TEGPKLAAALEAHVKQYDVDVM  284 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhc--chhhhhhh--hhCCeeccccchhheecccc-ccchHHHHHHHHHHhhcCchhh
Confidence            4689999999999999999999997  88777753  34555422  22     122 2233567778888888888775


Q ss_pred             eCeEEc-----------eEEecccce-eccCeEEEeccCCCCCCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCC
Q 019876           91 GNVTLG-----------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPD  155 (334)
Q Consensus        91 ~~~~v~-----------~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~  155 (334)
                      ...+..           ..++++++. .....+|||||+ +++.+++||++   .+||.+|        -+||.     .
T Consensus       285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA-rWRn~nvPGE~e~rnKGVayC--------PHCDG-----P  350 (520)
T COG3634         285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA-RWRNMNVPGEDEYRNKGVAYC--------PHCDG-----P  350 (520)
T ss_pred             hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc-chhcCCCCchHHHhhCCeeeC--------CCCCC-----c
Confidence            443321           245565554 378999999999 58889999986   3555433        45543     4


Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEE
Q 019876          156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV  235 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~  235 (334)
                      ++++|+|+|||||++|+|.|..|+.                     -+.+||+++-.+.+                    
T Consensus       351 LF~gK~VAVIGGGNSGvEAAIDLAG---------------------iv~hVtllEF~~eL--------------------  389 (520)
T COG3634         351 LFKGKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEL--------------------  389 (520)
T ss_pred             ccCCceEEEECCCcchHHHHHhHHh---------------------hhheeeeeecchhh--------------------
Confidence            6799999999999999999999994                     56799999765433                    


Q ss_pred             EEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                       .++       +.||+++.        .-++|.+++|...++|.  | +..+|++++..+
T Consensus       390 -----------------kAD-------~VLq~kl~--------sl~Nv~ii~na~Ttei~--G-dg~kV~Gl~Y~d  430 (520)
T COG3634         390 -----------------KAD-------AVLQDKLR--------SLPNVTIITNAQTTEVK--G-DGDKVTGLEYRD  430 (520)
T ss_pred             -----------------hhH-------HHHHHHHh--------cCCCcEEEecceeeEEe--c-CCceecceEEEe
Confidence                             111       23444443        35789999999999999  8 346899998876

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.78  E-value=2.5e-18  Score=166.26  Aligned_cols=165  Identities=21%  Similarity=0.220  Sum_probs=115.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCCccccccccC--------------CCCcc--------hhH
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVA--------------PDHPE--------TKI   73 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~gg~~~~~~~--------------p~~~~--------~~~   73 (334)
                      ....+|+|||||++|+++|..|++.+  .. ++|||+++.+||.|++..+              |.++.        ...
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g--~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~   83 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAG--VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE   83 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcC--CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence            45689999999999999999999998  44 9999999999998755321              22222        113


Q ss_pred             HHHHHHHHhhcCCcEE----EeCeEEc--------eEEecccce---eccCeEEEeccCCC-CCCCCCCCccC-CC-ccc
Q 019876           74 VINQFSRVVQHERCSF----FGNVTLG--------SSVSLSELR---QLYHVVVLAYGAES-DRALGIPGEDL-IG-VHS  135 (334)
Q Consensus        74 ~~~~~~~~~~~~~i~~----~~~~~v~--------~~v~~~~~~---~~yd~lIlATGs~~-p~~~~ipG~~~-~~-v~~  135 (334)
                      +..++..+++.+++.+    ...+.+.        -.|+++++.   +.+|.||+|||... |+.|.++|.+. .| +++
T Consensus        84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H  163 (443)
T COG2072          84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH  163 (443)
T ss_pred             HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence            5666667776665543    2222221        123333333   34999999999744 99999999863 22 222


Q ss_pred             hhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +.++       ++.     ...++|+|+|||+|++|+++|..|.+                    .+ ++||++.|++..
T Consensus       164 S~~~-------~~~-----~~~~GKrV~VIG~GaSA~di~~~l~~--------------------~g-a~vt~~qRs~~~  210 (443)
T COG2072         164 SADW-------PNP-----EDLRGKRVLVIGAGASAVDIAPELAE--------------------VG-ASVTLSQRSPPH  210 (443)
T ss_pred             hhcC-------CCc-----cccCCCeEEEECCCccHHHHHHHHHh--------------------cC-CeeEEEecCCCc
Confidence            2221       111     12389999999999999999999996                    56 689999999765


Q ss_pred             c
Q 019876          216 Q  216 (334)
Q Consensus       216 ~  216 (334)
                      .
T Consensus       211 ~  211 (443)
T COG2072         211 I  211 (443)
T ss_pred             e
Confidence            4

>TIGR03452 mycothione_red mycothione reductase

Probab=99.78  E-value=2.2e-17  Score=160.66  Aligned_cols=162  Identities=12%  Similarity=0.190  Sum_probs=104.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcch--------------------------h
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET--------------------------K   72 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~--------------------------~   72 (334)
                      +++++|||+||+|+.||..  ..|  .+|+|||++...|.|+++||.|.+.+.                          +
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~   77 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FAD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP   77 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCC--CeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence            4799999999999998654  355  999999986544445566887765321                          1


Q ss_pred             HHHHH--------H----HHHh---hcCCcEEEeCeEE---ceEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCc
Q 019876           73 IVINQ--------F----SRVV---QHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGV  133 (334)
Q Consensus        73 ~~~~~--------~----~~~~---~~~~i~~~~~~~v---~~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v  133 (334)
                      .+..+        +    ....   +..+++++.+...   ...+.+.++ .+.||+||||||+ .|..|++.+.+...+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs-~p~~p~~~~~~~~~~  156 (452)
T TIGR03452        78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGS-RPYIPPAIADSGVRY  156 (452)
T ss_pred             HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECC-CCCCCCCCCCCCCEE
Confidence            11111        1    0111   1257777766543   234555443 4689999999999 577776444322223


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+..+...    ..         ..+++++|||+|++|+|+|..|++                    .|. +||++++.+
T Consensus       157 ~~~~~~~~----l~---------~~~k~vvVIGgG~ig~E~A~~l~~--------------------~G~-~Vtli~~~~  202 (452)
T TIGR03452       157 HTNEDIMR----LP---------ELPESLVIVGGGYIAAEFAHVFSA--------------------LGT-RVTIVNRST  202 (452)
T ss_pred             EcHHHHHh----hh---------hcCCcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEEccC
Confidence            33333321    10         136899999999999999999986                    565 699999988


Q ss_pred             ccccCC
Q 019876          214 PVQAAC  219 (334)
Q Consensus       214 ~~~~~~  219 (334)
                      .++..+
T Consensus       203 ~ll~~~  208 (452)
T TIGR03452       203 KLLRHL  208 (452)
T ss_pred             cccccc
Confidence            765433

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.74  E-value=1.9e-17  Score=158.64  Aligned_cols=149  Identities=26%  Similarity=0.379  Sum_probs=106.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc--------c---------------CCCC------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--------V---------------APDH------   68 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~--------~---------------~p~~------   68 (334)
                      ..++|+|||||||||++|..|++.|  .++++||+.+.+||+|.|.        -               +|++      
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~   82 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD   82 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCC--CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence            4679999999999999999999997  9999999999999999764        1               1111      


Q ss_pred             ----cchhHHHHHHHHHhhcCCc--EEEeCeEE---c-----e-EEeccc-----ceeccCeEEEeccCCC-CCCCCCCC
Q 019876           69 ----PETKIVINQFSRVVQHERC--SFFGNVTL---G-----S-SVSLSE-----LRQLYHVVVLAYGAES-DRALGIPG  127 (334)
Q Consensus        69 ----~~~~~~~~~~~~~~~~~~i--~~~~~~~v---~-----~-~v~~~~-----~~~~yd~lIlATGs~~-p~~~~ipG  127 (334)
                          +...++.+|+..+++++++  .+.+++.+   .     . .|...+     .+.-||.|++|||.+. |+.|.+||
T Consensus        83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g  162 (448)
T KOG1399|consen   83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG  162 (448)
T ss_pred             cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence                2234788999999998885  24444422   1     0 122211     1235999999999976 88888887


Q ss_pred             cc---CCC-ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          128 ED---LIG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       128 ~~---~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ..   .+| ++++          .+|+  ..+...+|+|+|||+|++|+|+|..++.
T Consensus       163 ~~~~~f~G~~iHS----------~~Yk--~~e~f~~k~VlVIG~g~SG~DIs~d~~~  207 (448)
T KOG1399|consen  163 PGIESFKGKIIHS----------HDYK--SPEKFRDKVVLVVGCGNSGMDISLDLLR  207 (448)
T ss_pred             CchhhcCCcceeh----------hhcc--CcccccCceEEEECCCccHHHHHHHHHH
Confidence            32   222 2222          2222  1234488999999999999999999885

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.71  E-value=1.1e-16  Score=145.65  Aligned_cols=165  Identities=17%  Similarity=0.245  Sum_probs=110.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcchhH--HHHHHHH-HhhcCC-------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKI--VINQFSR-VVQHER-------   86 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~~~~--~~~~~~~-~~~~~~-------   86 (334)
                      ..++++|||+||+|..||..+.+.|  ++.+.+|++..+||.+.. ||.|.+.+...  ++..++. .++..|       
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlG--lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~  115 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS  115 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhc--ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence            5689999999999999999999998  999999999888876644 88888654321  1121221 233333       


Q ss_pred             -----------------------------cEEEeCeE--Ec-eEEec--cc---ceeccCeEEEeccCCCCCCCCCCCcc
Q 019876           87 -----------------------------CSFFGNVT--LG-SSVSL--SE---LRQLYHVVVLAYGAESDRALGIPGED  129 (334)
Q Consensus        87 -----------------------------i~~~~~~~--v~-~~v~~--~~---~~~~yd~lIlATGs~~p~~~~ipG~~  129 (334)
                                                   +++..+.-  ++ ..|..  .+   ..+.+..+||||||.   .+++||.+
T Consensus       116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe---V~~~PGI~  192 (506)
T KOG1335|consen  116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE---VTPFPGIT  192 (506)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc---cCCCCCeE
Confidence                                         33332211  11 11222  12   235789999999994   23566753


Q ss_pred             --CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEE
Q 019876          130 --LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY  207 (334)
Q Consensus       130 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt  207 (334)
                        .+-+.++...+. +            -+.+++.+|||+|.+|+|++....+                    +|+ +||
T Consensus       193 IDekkIVSStgALs-L------------~~vPk~~~viG~G~IGLE~gsV~~r--------------------LGs-eVT  238 (506)
T KOG1335|consen  193 IDEKKIVSSTGALS-L------------KEVPKKLTVIGAGYIGLEMGSVWSR--------------------LGS-EVT  238 (506)
T ss_pred             ecCceEEecCCccc-h------------hhCcceEEEEcCceeeeehhhHHHh--------------------cCC-eEE
Confidence              444554432221 0            1257999999999999999988886                    787 599


Q ss_pred             EEeecCccccCCCH
Q 019876          208 LVGRRGPVQAACTA  221 (334)
Q Consensus       208 iv~r~~~~~~~~~~  221 (334)
                      +|+-.+.+...++.
T Consensus       239 ~VEf~~~i~~~mD~  252 (506)
T KOG1335|consen  239 VVEFLDQIGGVMDG  252 (506)
T ss_pred             EEEehhhhccccCH
Confidence            99998877655443

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.71  E-value=3.8e-16  Score=140.56  Aligned_cols=165  Identities=19%  Similarity=0.274  Sum_probs=114.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCCcch-------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPET-------------------------   71 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~~~~-------------------------   71 (334)
                      +..+..|||||.+|+++|+.++..|  .++.|+|..-.+||. .++||.|.+...                         
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~G--Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f   96 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF   96 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcC--ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence            4789999999999999999999997  999999987456654 445665543210                         


Q ss_pred             ---------hHHHHHH----HHHhhcCCcEEEeCeE-E-c---eEEecccce---eccCeEEEeccCCCCCCCCCCCccC
Q 019876           72 ---------KIVINQF----SRVVQHERCSFFGNVT-L-G---SSVSLSELR---QLYHVVVLAYGAESDRALGIPGEDL  130 (334)
Q Consensus        72 ---------~~~~~~~----~~~~~~~~i~~~~~~~-v-~---~~v~~~~~~---~~yd~lIlATGs~~p~~~~ipG~~~  130 (334)
                               .....++    +..+.+.+++++.+.. + +   .+|...++.   +.+.+++||||. .|..|.|||.+.
T Consensus        97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg-~p~~PnIpG~E~  175 (478)
T KOG0405|consen   97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGG-RPIIPNIPGAEL  175 (478)
T ss_pred             cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCC-ccCCCCCCchhh
Confidence                     0122222    3334455677766543 1 1   234444443   578999999999 599999999752


Q ss_pred             CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEe
Q 019876          131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG  210 (334)
Q Consensus       131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~  210 (334)
                       ++ ++..|+    ...         ..+||++|||+|++|+|+|..++.                    +|. +++++-
T Consensus       176 -gi-dSDgff----~Le---------e~Pkr~vvvGaGYIavE~Agi~~g--------------------Lgs-ethlfi  219 (478)
T KOG0405|consen  176 -GI-DSDGFF----DLE---------EQPKRVVVVGAGYIAVEFAGIFAG--------------------LGS-ETHLFI  219 (478)
T ss_pred             -cc-cccccc----chh---------hcCceEEEEccceEEEEhhhHHhh--------------------cCC-eeEEEE
Confidence             11 111111    010         257999999999999999999986                    787 599999


Q ss_pred             ecCccccCCCH
Q 019876          211 RRGPVQAACTA  221 (334)
Q Consensus       211 r~~~~~~~~~~  221 (334)
                      |.+.++..|++
T Consensus       220 R~~kvLR~FD~  230 (478)
T KOG0405|consen  220 RQEKVLRGFDE  230 (478)
T ss_pred             ecchhhcchhH
Confidence            99988877654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.59  E-value=1.2e-14  Score=140.55  Aligned_cols=153  Identities=17%  Similarity=0.211  Sum_probs=98.9

Q ss_pred             HHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCC-----cchhHHHHH-HHHHhhcCCcEEEeCeEEc------eEEe
Q 019876           33 YTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----PETKIVINQ-FSRVVQHERCSFFGNVTLG------SSVS  100 (334)
Q Consensus        33 ~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~-----~~~~~~~~~-~~~~~~~~~i~~~~~~~v~------~~v~  100 (334)
                      +||.+|++.+++.+|+|||+++..+ ...+++ |..     ...++...+ ..+++...+++++.+..|.      ..+.
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~-~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~   78 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVS-FANCGL-PYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV   78 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCcee-EEcCCC-CeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence            4788998887789999999987542 111111 211     112232322 2345577899987765542      1232


Q ss_pred             ccc----ceec--cCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCCCCCCCCCCeEEEEcCCHHHH
Q 019876          101 LSE----LRQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTAVILGQGNVAL  172 (334)
Q Consensus       101 ~~~----~~~~--yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~  172 (334)
                      +..    ....  ||+||||||+ .|+.|++||.+.+++++..++...  +....+       -..+++|+|||+|++|+
T Consensus        79 ~~~~~~~~~~~~~yd~lIiATG~-~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~-------~~~~~~vvViGgG~~g~  150 (427)
T TIGR03385        79 VRNNKTNETYEESYDYLILSPGA-SPIVPNIEGINLDIVFTLRNLEDTDAIKQYID-------KNKVENVVIIGGGYIGI  150 (427)
T ss_pred             EEECCCCCEEecCCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHh-------hcCCCeEEEECCCHHHH
Confidence            321    1345  9999999999 588889999876677665443211  000000       02468999999999999


Q ss_pred             HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      |+|..|++                    .+. +|+++.+.+.++
T Consensus       151 e~A~~l~~--------------------~g~-~Vtli~~~~~~~  173 (427)
T TIGR03385       151 EMAEALRE--------------------RGK-NVTLIHRSERIL  173 (427)
T ss_pred             HHHHHHHh--------------------CCC-cEEEEECCcccC
Confidence            99999986                    565 699999987663

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=4.2e-14  Score=127.11  Aligned_cols=199  Identities=20%  Similarity=0.294  Sum_probs=123.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcC---CCC-----Cccc-cccccCCCCcchh---------------
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR---LPT-----PFGL-VRSGVAPDHPETK---------------   72 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~---~~~-----~gg~-~~~~~~p~~~~~~---------------   72 (334)
                      .-.++++|||||.+|++||..++..|  .+|.++|-   .|.     +||. .+.||+|.+....               
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G--~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG   94 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLG--AKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG   94 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcC--CcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence            35689999999999999999999997  89999873   222     2343 3446766542211               


Q ss_pred             -------------HHHHHHHHHhhcCC-----------cEEEeC--eEEc-eEE--ecccc---eeccCeEEEeccCCCC
Q 019876           73 -------------IVINQFSRVVQHER-----------CSFFGN--VTLG-SSV--SLSEL---RQLYHVVVLAYGAESD  120 (334)
Q Consensus        73 -------------~~~~~~~~~~~~~~-----------i~~~~~--~~v~-~~v--~~~~~---~~~yd~lIlATGs~~p  120 (334)
                                   .+.+..++..+..+           ++++..  .-++ +.+  +...+   ...++.++||||. +|
T Consensus        95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~-RP  173 (503)
T KOG4716|consen   95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL-RP  173 (503)
T ss_pred             CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC-CC
Confidence                         11222222222211           111000  0001 011  11222   2478999999999 69


Q ss_pred             CCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhc
Q 019876          121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG  200 (334)
Q Consensus       121 ~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~  200 (334)
                      +.|+|||...-++.+ .++.    ..+         +.+-+-+|||+|++|+|+|..|+.                    
T Consensus       174 rYp~IpG~~Ey~ITS-DDlF----sl~---------~~PGkTLvVGa~YVaLECAgFL~g--------------------  219 (503)
T KOG4716|consen  174 RYPDIPGAKEYGITS-DDLF----SLP---------YEPGKTLVVGAGYVALECAGFLKG--------------------  219 (503)
T ss_pred             CCCCCCCceeeeecc-cccc----ccc---------CCCCceEEEccceeeeehhhhHhh--------------------
Confidence            999999965333322 1211    111         234567899999999999999995                    


Q ss_pred             CCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCc
Q 019876          201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQ  280 (334)
Q Consensus       201 ~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (334)
                      .|. +||++.|+-.+                                       ..+++.+++.+.+++.         +
T Consensus       220 fg~-~vtVmVRSI~L---------------------------------------rGFDqdmae~v~~~m~---------~  250 (503)
T KOG4716|consen  220 FGY-DVTVMVRSILL---------------------------------------RGFDQDMAELVAEHME---------E  250 (503)
T ss_pred             cCC-CcEEEEEEeec---------------------------------------ccccHHHHHHHHHHHH---------H
Confidence            665 59999987432                                       2334555667777765         7


Q ss_pred             eEEEEEeccccceeeccccCCCC
Q 019876          281 RELHFVFFRKPDSFLESNERSGH  303 (334)
Q Consensus       281 ~gv~~~~~~~~~~i~~~~~~~~~  303 (334)
                      .||+|.-...|..+.+.+  +++
T Consensus       251 ~Gikf~~~~vp~~Veq~~--~g~  271 (503)
T KOG4716|consen  251 RGIKFLRKTVPERVEQID--DGK  271 (503)
T ss_pred             hCCceeecccceeeeecc--CCc
Confidence            899999888888887432  455

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.54  E-value=7e-14  Score=129.37  Aligned_cols=193  Identities=18%  Similarity=0.176  Sum_probs=112.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-ccccccccCCCCcchhHHHHHHHHHhhcC--CcEEEeCeE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHE--RCSFFGNVT   94 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-gg~~~~~~~p~~~~~~~~~~~~~~~~~~~--~i~~~~~~~   94 (334)
                      ++++|||+|+|.+|.+++..|-...  ++|+|++++++. ...+...+.-+....+.+.+.........  +++++....
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~--YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec  131 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSL--YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAEC  131 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccc--cceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEeccc
Confidence            5689999999999999999998875  999999988652 11111111112223455666666665544  345543322


Q ss_pred             E--c---eEEec----c-c----ceeccCeEEEeccCCCCCCCCCCCccC-----CCccchhhHHHHhcCCCC---CCCC
Q 019876           95 L--G---SSVSL----S-E----LRQLYHVVVLAYGAESDRALGIPGEDL-----IGVHSAREFVWWYNGHPD---GKNL  152 (334)
Q Consensus        95 v--~---~~v~~----~-~----~~~~yd~lIlATGs~~p~~~~ipG~~~-----~~v~~~~~~~~~~~~~~~---~~~~  152 (334)
                      +  +   +.+..    + .    ..+.||+||+|+|+ .+..++|||...     +-+.++.++...+-...+   ...+
T Consensus       132 ~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA-~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l  210 (491)
T KOG2495|consen  132 TKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGA-EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGL  210 (491)
T ss_pred             EeecccccEEEEeeeccCCCcceeeecccEEEEeccC-CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Confidence            2  1   11211    1 1    23589999999999 589999999753     222333222111110000   0011


Q ss_pred             C-CCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC-CcceEEEEeecCccccCCCH
Q 019876          153 S-PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS-SIRKVYLVGRRGPVQAACTA  221 (334)
Q Consensus       153 ~-~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vtiv~r~~~~~~~~~~  221 (334)
                      . ++..+--++||||||++|+|+|.+|+.        .++.....++... .--+||+++..+.+++.|+.
T Consensus       211 ~~eerkRlLh~VVVGGGPTGVEFAaEL~D--------fi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdk  273 (491)
T KOG2495|consen  211 SDEERKRLLHFVVVGGGPTGVEFAAELAD--------FIPEDLRKIYPELKKDIKVTLIEAADHILNMFDK  273 (491)
T ss_pred             ChHHhhheEEEEEECCCCcceeehHHHHH--------HHHHHHHHhhhcchhheEEEeeccchhHHHHHHH
Confidence            0 111233589999999999999999985        2222222222211 12259999988877655544

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.51  E-value=5.6e-13  Score=127.54  Aligned_cols=164  Identities=20%  Similarity=0.182  Sum_probs=106.0

Q ss_pred             EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc---cccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876           22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--   96 (334)
Q Consensus        22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~---~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--   96 (334)
                      ++|||+|++|+.+|..+++..++.+++++..++.....   +.+.+.........+..... +....++++..++.+.  
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i   79 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI   79 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence            58999999999999999998888999988877543111   11111111111122222112 2235578887776542  


Q ss_pred             ----eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCCCCCCCCCCeEEEEcCCHH
Q 019876           97 ----SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTAVILGQGNV  170 (334)
Q Consensus        97 ----~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~vvVIG~G~~  170 (334)
                          ..+.+.++++.||++++|||+ .|..++  +....++++.+.....  +...         ....++++|||+|.+
T Consensus        80 d~~~~~v~~~~g~~~yd~LvlatGa-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~vvG~G~~  147 (415)
T COG0446          80 DPENKVVLLDDGEIEYDYLVLATGA-RPRPPP--ISDWEGVVTLRLREDAEALKGG---------AEPPKDVVVVGAGPI  147 (415)
T ss_pred             cCCCCEEEECCCcccccEEEEcCCC-cccCCC--ccccCceEEECCHHHHHHHHHH---------HhccCeEEEECCcHH
Confidence                345555566789999999999 477665  4444555554433321  1111         112589999999999


Q ss_pred             HHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCC
Q 019876          171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC  219 (334)
Q Consensus       171 g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~  219 (334)
                      |+++|..+.+                    .|. +|++++..+++...+
T Consensus       148 gle~A~~~~~--------------------~G~-~v~l~e~~~~~~~~~  175 (415)
T COG0446         148 GLEAAEAAAK--------------------RGK-KVTLIEAADRLGGQL  175 (415)
T ss_pred             HHHHHHHHHH--------------------cCC-eEEEEEcccccchhh
Confidence            9999999996                    675 699999998875433

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.36  E-value=8.1e-12  Score=117.00  Aligned_cols=166  Identities=18%  Similarity=0.145  Sum_probs=96.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC---ccccccc----c----------CC----------------
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSG----V----------AP----------------   66 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~---gg~~~~~----~----------~p----------------   66 (334)
                      .++++||.||++|+.|..|...+ ..++..+|+.+..   -|++..+    +          -|                
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl   81 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL   81 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence            58999999999999999999886 6899999987652   1222110    0          00                


Q ss_pred             --------CCcchhHHHHHHHHHhhcCCcEEEeCeEEc------------eEEecc-----cceeccCeEEEeccCCCCC
Q 019876           67 --------DHPETKIVINQFSRVVQHERCSFFGNVTLG------------SSVSLS-----ELRQLYHVVVLAYGAESDR  121 (334)
Q Consensus        67 --------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~------------~~v~~~-----~~~~~yd~lIlATGs~~p~  121 (334)
                              .++...++.+|+.+..++.+-.+..+..|.            -.|...     .....++.||||||. .|.
T Consensus        82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~-~P~  160 (341)
T PF13434_consen   82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG-QPR  160 (341)
T ss_dssp             HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE-----EE-
T ss_pred             hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC-CCC
Confidence                    112234566777777777664466665542            123331     123478999999997 587


Q ss_pred             CCCCCC-cc-CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHh
Q 019876          122 ALGIPG-ED-LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE  199 (334)
Q Consensus       122 ~~~ipG-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~  199 (334)
                      .|..-. .. .+.|++..+++.....          ....++|+|||||.+|.|++..|.+                   
T Consensus       161 iP~~~~~~~~~~~v~Hss~~~~~~~~----------~~~~~~V~VVGgGQSAAEi~~~L~~-------------------  211 (341)
T PF13434_consen  161 IPEWFQDLPGSPRVFHSSEYLSRIDQ----------SLAGKRVAVVGGGQSAAEIFLDLLR-------------------  211 (341)
T ss_dssp             --GGGGGGTT-TTEEEGGGHHHHHT---------------EEEEEE-SSHHHHHHHHHHHH-------------------
T ss_pred             CCcchhhcCCCCCEEEehHhhhcccc----------ccCCCeEEEECCcHhHHHHHHHHHh-------------------
Confidence            764332 22 3678888888765432          2267999999999999999999986                   


Q ss_pred             cCCcceEEEEeecCccc
Q 019876          200 GSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       200 ~~~~~~Vtiv~r~~~~~  216 (334)
                      +....+|+++.|+..+.
T Consensus       212 ~~~~~~V~~i~R~~~~~  228 (341)
T PF13434_consen  212 RGPEAKVTWISRSPGFF  228 (341)
T ss_dssp             H-TTEEEEEEESSSS-E
T ss_pred             CCCCcEEEEEECCCccC
Confidence            22325799999997554

>PRK09897 hypothetical protein; Provisional

Probab=99.27  E-value=1.7e-10  Score=113.76  Aligned_cols=39  Identities=23%  Similarity=0.447  Sum_probs=34.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      +++|+||||||+|+++|..|.+.....+|+|||+...+|
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG   39 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence            368999999999999999999876568999999987666

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.27  E-value=2.7e-12  Score=110.95  Aligned_cols=128  Identities=23%  Similarity=0.364  Sum_probs=77.0

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcc------hhHHH--H--HHHHHhhcCCcEEE
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE------TKIVI--N--QFSRVVQHERCSFF   90 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~------~~~~~--~--~~~~~~~~~~i~~~   90 (334)
                      ||+||||||||++||.+|++.+  .+++|+++.+..+.. ...+ +....      .....  .  .+.+.+...+++++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~--~~v~ii~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   76 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPG--AKVLIIEKSPGTPYN-SGCI-PSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIR   76 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--SEEEEESSSSHHHHH-HSHH-HHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEE
T ss_pred             CEEEEecHHHHHHHHHHHhcCC--CeEEEEecccccccc-cccc-cccccccccccccccccccccccccccccceEEEe
Confidence            6999999999999999999876  999999887643221 1101 11000      00111  1  33333455678774


Q ss_pred             eCeEE-c-----eE-------E----ecccceeccCeEEEeccCCCCCCCCCCCcc----CCCccchhhHHHHhcCCCCC
Q 019876           91 GNVTL-G-----SS-------V----SLSELRQLYHVVVLAYGAESDRALGIPGED----LIGVHSAREFVWWYNGHPDG  149 (334)
Q Consensus        91 ~~~~v-~-----~~-------v----~~~~~~~~yd~lIlATGs~~p~~~~ipG~~----~~~v~~~~~~~~~~~~~~~~  149 (334)
                      .+..+ .     ..       +    ..+..++.||+||||||+ .|+.|++||.+    ..++.++..+.....     
T Consensus        77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~-----  150 (201)
T PF07992_consen   77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS-RPRTPNIPGEEVAYFLRGVDDAQRFLELLE-----  150 (201)
T ss_dssp             HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE-EEEEESSTTTTTECBTTSEEHHHHHHTHSS-----
T ss_pred             eccccccccccccccccCcccceeeccCCceEecCCeeeecCcc-ccceeecCCCcccccccccccccccccccc-----
Confidence            43322 1     11       1    112234689999999998 58888999963    234555544443221     


Q ss_pred             CCCCCCCCCCCeEEEEc
Q 019876          150 KNLSPDLKSTDTAVILG  166 (334)
Q Consensus       150 ~~~~~~~~~~k~vvVIG  166 (334)
                              ..++|+|||
T Consensus       151 --------~~~~v~VvG  159 (201)
T PF07992_consen  151 --------SPKRVAVVG  159 (201)
T ss_dssp             --------TTSEEEEES
T ss_pred             --------ccccccccc
Confidence                    345999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.12  E-value=3.2e-10  Score=83.45  Aligned_cols=79  Identities=19%  Similarity=0.305  Sum_probs=59.0

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED  240 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~  240 (334)
                      +|+|||||++|+|+|..|++                    .+. +||+++|++.++..+ ++.+++              
T Consensus         1 ~vvViGgG~ig~E~A~~l~~--------------------~g~-~vtli~~~~~~~~~~-~~~~~~--------------   44 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAE--------------------LGK-EVTLIERSDRLLPGF-DPDAAK--------------   44 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--------------------TTS-EEEEEESSSSSSTTS-SHHHHH--------------
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------hCc-EEEEEeccchhhhhc-CHHHHH--------------
Confidence            68999999999999999996                    665 799999999887333 332222              


Q ss_pred             ccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                             .+++.+.         +.||++++++.+++|.  .++++ ++ |++++
T Consensus        45 -----------------------~~~~~l~---------~~gV~v~~~~~v~~i~--~~~~~-~~-V~~~~   79 (80)
T PF00070_consen   45 -----------------------ILEEYLR---------KRGVEVHTNTKVKEIE--KDGDG-VE-VTLED   79 (80)
T ss_dssp             -----------------------HHHHHHH---------HTTEEEEESEEEEEEE--EETTS-EE-EEEET
T ss_pred             -----------------------HHHHHHH---------HCCCEEEeCCEEEEEE--EeCCE-EE-EEEec
Confidence                                   2233332         5699999999999998  42344 87 88875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.11  E-value=2.9e-09  Score=101.14  Aligned_cols=168  Identities=22%  Similarity=0.328  Sum_probs=95.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcC-CCCeEEEEcCCCCCcccccccc-----------------CCCCc-----------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSGV-----------------APDHP-----------   69 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~-~~~~v~vie~~~~~gg~~~~~~-----------------~p~~~-----------   69 (334)
                      +++|+|||+|++|+.+|.+|.+.- +...|.|||+.+..|+.+.|.-                 .|+.+           
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~   80 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL   80 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence            479999999999999999999875 2344999999988766554421                 12200           


Q ss_pred             ---------------------chhHHHHHHHHHhhcCC---cEEEeCeEEce---------EEecccce-eccCeEEEec
Q 019876           70 ---------------------ETKIVINQFSRVVQHER---CSFFGNVTLGS---------SVSLSELR-QLYHVVVLAY  115 (334)
Q Consensus        70 ---------------------~~~~~~~~~~~~~~~~~---i~~~~~~~v~~---------~v~~~~~~-~~yd~lIlAT  115 (334)
                                           ....+.+++..+++...   +.++....++.         .+...++. ..+|.+|+||
T Consensus        81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                                 00011122222333222   44433333321         12233343 3799999999


Q ss_pred             cCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHH
Q 019876          116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW  195 (334)
Q Consensus       116 Gs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~  195 (334)
                      |...|..++ -..+.++-..   +..    .+.-......+....+|+|+|+|.+.+|....|.+.              
T Consensus       161 gh~~~~~~~-~~~~~~~~~~---~ia----~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~--------------  218 (474)
T COG4529         161 GHSAPPADP-AARDLKGSPR---LIA----DPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRR--------------  218 (474)
T ss_pred             cCCCCCcch-hhhccCCCcc---eec----cccCCcccccccCCCceEEecCCchhHHHHHHHhcc--------------
Confidence            984333322 1122221111   110    000001122344667899999999999999999872              


Q ss_pred             HHHhcCCcceEEEEeecC
Q 019876          196 TALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       196 ~~~~~~~~~~Vtiv~r~~  213 (334)
                           .....||+++|++
T Consensus       219 -----gh~g~It~iSRrG  231 (474)
T COG4529         219 -----GHKGPITAISRRG  231 (474)
T ss_pred             -----CCccceEEEeccc
Confidence                 2234699999997

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.01  E-value=4.3e-09  Score=97.75  Aligned_cols=98  Identities=21%  Similarity=0.312  Sum_probs=71.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc--------ccccc---------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF--------GLVRS---------------------------   62 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g--------g~~~~---------------------------   62 (334)
                      ..++|+|||||||||.||..+.+.+  .+|+|||+.+.+|        |.++.                           
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G--~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f   79 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAG--RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF   79 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcC--CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence            3579999999999999999999997  9999999997753        33311                           


Q ss_pred             ------------cc----------CCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--------eEEecccc-eeccCeE
Q 019876           63 ------------GV----------APDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSEL-RQLYHVV  111 (334)
Q Consensus        63 ------------~~----------~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--------~~v~~~~~-~~~yd~l  111 (334)
                                  |+          +|.-.....+.+.+..-+++.||++++++.+.        ..+++.++ ++.+|++
T Consensus        80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l  159 (408)
T COG2081          80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL  159 (408)
T ss_pred             CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence                        00          12212233566666777788899999888763        23555666 5799999


Q ss_pred             EEeccC
Q 019876          112 VLAYGA  117 (334)
Q Consensus       112 IlATGs  117 (334)
                      |||||.
T Consensus       160 ilAtGG  165 (408)
T COG2081         160 ILATGG  165 (408)
T ss_pred             EEecCC
Confidence            999995

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=98.93  E-value=8.6e-10  Score=96.39  Aligned_cols=171  Identities=16%  Similarity=0.189  Sum_probs=99.1

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc-c---CCCC----cchhHHHHHHHHHhhcCCcEEEeC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-V---APDH----PETKIVINQFSRVVQHERCSFFGN   92 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~-~---~p~~----~~~~~~~~~~~~~~~~~~i~~~~~   92 (334)
                      +.+|||||.||.+||..|+...|..+|.++...+..-..-+|. +   ...|    ....++...++.++.+  +.- .+
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~--v~~-~~   77 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND--VVT-WD   77 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh--hhh-hc
Confidence            4689999999999999999999999999998875432221110 0   0000    0001122222222222  110 01


Q ss_pred             eEEceEEeccc-ceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHH
Q 019876           93 VTLGSSVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVA  171 (334)
Q Consensus        93 ~~v~~~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g  171 (334)
                      .. .+.+.+++ .+..|++|.+|||+ +|.. ...|.+ +-+...++-..       ..-+.-.+.+.|.|.|+|.|-++
T Consensus        78 s~-ehci~t~~g~~~ky~kKOG~tg~-kPkl-q~E~~n-~~Iv~irDtDs-------aQllq~kl~kaK~VlilgnGgia  146 (334)
T KOG2755|consen   78 SS-EHCIHTQNGEKLKYFKLCLCTGY-KPKL-QVEGIN-PKIVGIRDTDS-------AQLLQCKLVKAKIVLILGNGGIA  146 (334)
T ss_pred             cc-cceEEecCCceeeEEEEEEecCC-Ccce-eecCCC-ceEEEEecCcH-------HHHHHHHHhhcceEEEEecCchh
Confidence            11 11233333 34689999999999 5654 444422 12221111000       00011124478999999999999


Q ss_pred             HHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHH
Q 019876          172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL  228 (334)
Q Consensus       172 ~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l  228 (334)
                      +|.+.++.                      .. +|++......+...|.++-..+.+
T Consensus       147 ~El~yElk----------------------~~-nv~w~ikd~~IsaTFfdpGaaef~  180 (334)
T KOG2755|consen  147 MELTYELK----------------------IL-NVTWKIKDEGISATFFDPGAAEFY  180 (334)
T ss_pred             HHHHHHhh----------------------cc-eeEEEecchhhhhcccCccHHHHh
Confidence            99999987                      33 588888888787777776555554

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.92  E-value=3e-09  Score=101.83  Aligned_cols=97  Identities=22%  Similarity=0.265  Sum_probs=54.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc--------ccccc------------c----------------
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF--------GLVRS------------G----------------   63 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g--------g~~~~------------~----------------   63 (334)
                      ++|+|||||||||.||..+++.+  .+|+|+|+++.+|        |.++.            .                
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g--~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~   78 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKG--ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS   78 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence            58999999999999999999987  9999999997753        22211            0                


Q ss_pred             ------------c----------CCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce---------EEec-ccceeccCeE
Q 019876           64 ------------V----------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSL-SELRQLYHVV  111 (334)
Q Consensus        64 ------------~----------~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~---------~v~~-~~~~~~yd~l  111 (334)
                                  +          +|......++.+.+...+++.++++++++.|..         .+.. ....+.+|+|
T Consensus        79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v  158 (409)
T PF03486_consen   79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV  158 (409)
T ss_dssp             HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred             HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence                        0          111112234555666667778899998887631         2344 3445689999


Q ss_pred             EEeccCC
Q 019876          112 VLAYGAE  118 (334)
Q Consensus       112 IlATGs~  118 (334)
                      |||||..
T Consensus       159 ILAtGG~  165 (409)
T PF03486_consen  159 ILATGGK  165 (409)
T ss_dssp             EE----S
T ss_pred             EEecCCC
Confidence            9999973

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=98.84  E-value=5.1e-09  Score=97.04  Aligned_cols=204  Identities=17%  Similarity=0.156  Sum_probs=118.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-c-------cccccccCCCCc-----------------ch
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-F-------GLVRSGVAPDHP-----------------ET   71 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-g-------g~~~~~~~p~~~-----------------~~   71 (334)
                      +++.-.+|||+|.+..+++...+...++..+.+|..++.. +       .+|.|+- |.-.                 .+
T Consensus       176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~d-pn~~k~lrfkqwsGkeRsiffep  254 (659)
T KOG1346|consen  176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGD-PNSAKKLRFKQWSGKERSIFFEP  254 (659)
T ss_pred             cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCC-CChhhheeecccCCccceeEecC
Confidence            3456789999999999999988888788999999877542 1       2343322 1100                 00


Q ss_pred             hHHHHHH--HHHhhcCCcEEEeCeEE------ceEEecccce-eccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH
Q 019876           72 KIVINQF--SRVVQHERCSFFGNVTL------GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW  142 (334)
Q Consensus        72 ~~~~~~~--~~~~~~~~i~~~~~~~v------~~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~  142 (334)
                      ..+.-..  .....+-||-+..+..+      ++.|.++++. +.||+++||||. +|+.++.-....+.+..-..   .
T Consensus       255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~-~Pk~l~~~~~A~~evk~kit---~  330 (659)
T KOG1346|consen  255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGV-RPKKLQVFEEASEEVKQKIT---Y  330 (659)
T ss_pred             CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCc-CcccchhhhhcCHHhhhhee---E
Confidence            0000000  01122345666555443      2346666664 699999999999 58876542211111110000   1


Q ss_pred             hcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec----CccccC
Q 019876          143 YNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR----GPVQAA  218 (334)
Q Consensus       143 ~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~----~~~~~~  218 (334)
                      ++...|+..+..-+...++|.|||+|++|.|+|-.|.+..                +..|.+ |+-+.-.    +.+++.
T Consensus       331 fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~----------------r~~g~e-V~QvF~Ek~nm~kiLPe  393 (659)
T KOG1346|consen  331 FRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKY----------------RNEGVE-VHQVFEEKYNMEKILPE  393 (659)
T ss_pred             EecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhh----------------hccCcE-EEEeecccCChhhhhHH
Confidence            1111222222222334589999999999999999998722                224654 6554332    345555


Q ss_pred             CCHHHHHHHHcCCceEEEEccCcc
Q 019876          219 CTAKELREILGIKNLYVHIREDDL  242 (334)
Q Consensus       219 ~~~~~~~~~l~~~gv~~~~~~~~~  242 (334)
                      +-.+--.+.+++.||.|+-+....
T Consensus       394 yls~wt~ekir~~GV~V~pna~v~  417 (659)
T KOG1346|consen  394 YLSQWTIEKIRKGGVDVRPNAKVE  417 (659)
T ss_pred             HHHHHHHHHHHhcCceeccchhhh
Confidence            555555677788999998877653

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.82  E-value=4.1e-07  Score=84.73  Aligned_cols=168  Identities=15%  Similarity=0.100  Sum_probs=104.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC---cccccccc--------------CCC-------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSGV--------------APD-------------   67 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~---gg~~~~~~--------------~p~-------------   67 (334)
                      ...+++.||-||+-++.|..|...+ +.++..+|+.+..   .|++..+.              -|.             
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~   82 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG   82 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence            4579999999999999999998875 5789999998752   23221110              010             


Q ss_pred             -----------CcchhHHHHHHHHHhhcCCcEEEeCeEEce------------EEecccc-eeccCeEEEeccCCCCCCC
Q 019876           68 -----------HPETKIVINQFSRVVQHERCSFFGNVTLGS------------SVSLSEL-RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        68 -----------~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~------------~v~~~~~-~~~yd~lIlATGs~~p~~~  123 (334)
                                 +....++.+|..+....+ -.++++..|..            .+...+. ...+..|||++|. .|+.|
T Consensus        83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~-~P~IP  160 (436)
T COG3486          83 RLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT-QPYIP  160 (436)
T ss_pred             hHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC-CcCCC
Confidence                       111234455555554443 33444544420            1222222 4578999999999 58877


Q ss_pred             C-CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC
Q 019876          124 G-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS  202 (334)
Q Consensus       124 ~-ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~  202 (334)
                      + +.....+.+++..+++.....          +...++|.|||+|-+|.|+...|.....                ...
T Consensus       161 ~~f~~l~~~~vfHss~~~~~~~~----------~~~~~~V~ViG~GQSAAEi~~~Ll~~~~----------------~~~  214 (436)
T COG3486         161 PCFRSLIGERVFHSSEYLERHPE----------LLQKRSVTVIGSGQSAAEIFLDLLNSQP----------------PQD  214 (436)
T ss_pred             hHHhCcCccceeehHHHHHhhHH----------hhcCceEEEEcCCccHHHHHHHHHhCCC----------------CcC
Confidence            4 333334568888887753222          2233459999999999999988875221                122


Q ss_pred             cceEEEEeecCcc
Q 019876          203 IRKVYLVGRRGPV  215 (334)
Q Consensus       203 ~~~Vtiv~r~~~~  215 (334)
                      . ++.++.|+..+
T Consensus       215 ~-~l~witR~~gf  226 (436)
T COG3486         215 Y-QLNWITRSSGF  226 (436)
T ss_pred             c-cceeeeccCCC
Confidence            2 48889998654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.73  E-value=1.1e-07  Score=85.71  Aligned_cols=100  Identities=20%  Similarity=0.271  Sum_probs=66.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-c--------------------c-----CCCC--c
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G--------------------V-----APDH--P   69 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~--------------------~-----~p~~--~   69 (334)
                      ...+|+||||||||++||.+|++.+  ++|+|+|+.+.+||.+.. +                    +     .++.  .
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G--~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~v  101 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVA  101 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceec
Confidence            3579999999999999999999986  999999998876543211 1                    0     0000  1


Q ss_pred             chhHHHHHHHHHhhcCCcEEEeCeEEceEEe----------c------------ccceeccCeEEEeccCCC
Q 019876           70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVS----------L------------SELRQLYHVVVLAYGAES  119 (334)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v~----------~------------~~~~~~yd~lIlATGs~~  119 (334)
                      ...++...+.+...+.|++++.++.+..-..          .            +...+.++.||+|||...
T Consensus       102 d~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176        102 DSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            1234455566666777899887765421110          0            012357999999999853

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.55  E-value=5.3e-07  Score=81.11  Aligned_cols=39  Identities=28%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ...+|+||||||||++||..|++.+  .+|+|+|+.+.+|+
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G--~~V~vlEk~~~~Gg   58 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNG--LKVCVLERSLAFGG   58 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence            4579999999999999999999997  99999999987653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.55  E-value=1.3e-06  Score=64.11  Aligned_cols=64  Identities=20%  Similarity=0.265  Sum_probs=54.1

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      +|+|||||+.|+.+|..|.+.+  .+|+|+++.+.+.        |.  ...++...+.+.+++.||++++++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~~~--------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~   64 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDRLL--------PG--FDPDAAKILEEYLRKRGVEVHTNTKVK   64 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSSSS--------TT--SSHHHHHHHHHHHHHTTEEEEESEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccchhh--------hh--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence            6899999999999999999987  9999999998753        21  134677788888899999999998875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.54  E-value=5.5e-07  Score=82.10  Aligned_cols=98  Identities=21%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-------------------------------c---c-
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-------------------------------G---V-   64 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-------------------------------~---~-   64 (334)
                      ++|+|||||++|+++|..|++.+  .+|+|+|+.+.++..+..                               +   . 
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKG--LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI   78 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence            47999999999999999999987  999999998654321100                               0   0 


Q ss_pred             -CCC-C---cchhHHHHHHHHHhhcCCcEEEeCeEEce--------EEecc--cceeccCeEEEeccCCC
Q 019876           65 -APD-H---PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLS--ELRQLYHVVVLAYGAES  119 (334)
Q Consensus        65 -~p~-~---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~--~~~~~yd~lIlATGs~~  119 (334)
                       .+. .   .....+...+.+.+.+.|++++.++.+..        .+.+.  ...+.+|.||+|+|.++
T Consensus        79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence             000 0   11224555666666778899887766531        12222  23468999999999853

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.51  E-value=8.5e-07  Score=85.09  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=66.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc----------ccCCCCc------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS----------GVAPDHP------------------   69 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~----------~~~p~~~------------------   69 (334)
                      ..++|+||||||||.+||..|++.|  ++|.|+|+.+.+|.....          .+.|.+.                  
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~   79 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK   79 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence            3589999999999999999999998  999999998765431110          0011110                  


Q ss_pred             ------------c-hhHHHHHHHHHhhcCCcEEEeCeEEceEEecc----------cceeccCeEEEeccCCC
Q 019876           70 ------------E-TKIVINQFSRVVQHERCSFFGNVTLGSSVSLS----------ELRQLYHVVVLAYGAES  119 (334)
Q Consensus        70 ------------~-~~~~~~~~~~~~~~~~i~~~~~~~v~~~v~~~----------~~~~~yd~lIlATGs~~  119 (334)
                                  . ...+-..+.+..++.|.+++.++.+......+          +.++.++.||.|+|..+
T Consensus        80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s  152 (396)
T COG0644          80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS  152 (396)
T ss_pred             eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence                        0 11233345566677899988887764322111          12568999999999743

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.51  E-value=6.3e-07  Score=76.94  Aligned_cols=40  Identities=33%  Similarity=0.323  Sum_probs=35.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL   59 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~   59 (334)
                      ...+|+||||||+||+||++|++.+  .+|+|||++-.+||-
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG   68 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGG   68 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCC--ceEEEEEeecccCCc
Confidence            3469999999999999999999997  999999998777543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.47  E-value=1.5e-06  Score=84.13  Aligned_cols=94  Identities=16%  Similarity=0.211  Sum_probs=74.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .-+++++|||||+.|+..|..+++.|  .+|||+|+.+.+        .|.+  .+++...+...+++.++++++++.+.
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG--~~VTiie~~~~i--------Lp~~--D~ei~~~~~~~l~~~gv~i~~~~~v~  238 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALG--SKVTVVERGDRI--------LPGE--DPEISKELTKQLEKGGVKILLNTKVT  238 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCC--------CCcC--CHHHHHHHHHHHHhCCeEEEccceEE
Confidence            45789999999999999999999998  999999998864        2533  45788888888888889999888763


Q ss_pred             e--------EEecccc---eeccCeEEEeccCCCCCCC
Q 019876           97 S--------SVSLSEL---RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        97 ~--------~v~~~~~---~~~yd~lIlATGs~~p~~~  123 (334)
                      .        .+.++++   ...+|+|++|+|- .|+..
T Consensus       239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR-~Pn~~  275 (454)
T COG1249         239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR-KPNTD  275 (454)
T ss_pred             EEEecCCeEEEEEecCCCCEEEeeEEEEccCC-ccCCC
Confidence            2        2333333   3569999999998 56654

>PLN02463 lycopene beta cyclase

Probab=98.47  E-value=1.4e-06  Score=84.64  Aligned_cols=101  Identities=24%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-----ccccc-----ccc-------CCC-----------
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-----FGLVR-----SGV-------APD-----------   67 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-----gg~~~-----~~~-------~p~-----------   67 (334)
                      ....++|+||||||||+++|..|.+.|  ++|+|+|+.+..     ++.|.     .++       .+.           
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~G--l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~  102 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEAG--LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKK  102 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHCC--CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCc
Confidence            345689999999999999999999986  999999986531     22210     000       000           


Q ss_pred             ------C-cchhHHHHHHHHHhhcCCcEEEeCeEEc-------eEEecccc-eeccCeEEEeccCC
Q 019876           68 ------H-PETKIVINQFSRVVQHERCSFFGNVTLG-------SSVSLSEL-RQLYHVVVLAYGAE  118 (334)
Q Consensus        68 ------~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~-------~~v~~~~~-~~~yd~lIlATGs~  118 (334)
                            . .....+...+.+.+...|++++......       ..|..+++ .+.+|.||.|+|..
T Consensus       103 ~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~  168 (447)
T PLN02463        103 DLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS  168 (447)
T ss_pred             cccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence                  0 1122344555555666788886443221       12444555 46899999999985

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.46  E-value=9.9e-07  Score=76.01  Aligned_cols=42  Identities=36%  Similarity=0.454  Sum_probs=33.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ...+|+||||||+|++||.+|++.+  ++|.+||++..+||...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g--~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAG--LKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHT--S-EEEEESSSS-BTTTT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCC--CeEEEEecCCCCCcccc
Confidence            3479999999999999999999997  99999999988776543

>TIGR00275 flavoprotein, HI0933 family

Probab=98.43  E-value=1.5e-06  Score=83.49  Aligned_cols=34  Identities=18%  Similarity=0.275  Sum_probs=30.8

Q ss_pred             EEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           23 CVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        23 vIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      +|||||+||++||..+++.+  .+|+|+|+.+.+|+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G--~~V~llEk~~~~G~   34 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREG--LSVLLLEKNKKIGK   34 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcC--CcEEEEecCccccc
Confidence            69999999999999999987  99999999887654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.43  E-value=3.5e-07  Score=64.96  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.3

Q ss_pred             EECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876           24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        24 IIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      |||||++|+++|..|++.+  .+|+|+|+.+.+||.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~   37 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDRLGGRARS   37 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTT--SEEEEEESSSSSSGGGCE
T ss_pred             CEeeCHHHHHHHHHHHHCC--CcEEEEecCcccCcceeE
Confidence            8999999999999999996  899999999999988754

...

>PRK06847 hypothetical protein; Provisional

Probab=98.40  E-value=2.8e-06  Score=80.58  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++++|+|||||++|+++|..|++.+  ++|+|+|+.+.
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence            3579999999999999999999987  99999998754

>PLN02661 Putative thiazole synthesis

Probab=98.38  E-value=2.8e-06  Score=79.14  Aligned_cols=39  Identities=33%  Similarity=0.475  Sum_probs=34.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..+|+|||||++|+.||.+|.+. ++.+|+|+|+...+||
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GG  130 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGG  130 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCccccc
Confidence            57999999999999999999975 2599999999877654

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.38  E-value=3.3e-06  Score=81.88  Aligned_cols=38  Identities=29%  Similarity=0.278  Sum_probs=34.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      ..++|+||||||||++||..|++.|  ++|+|+|+.+.++
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G--~~V~llEr~~~~g   41 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREG--AQVLVIERGNSAG   41 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Confidence            4589999999999999999999997  9999999986543

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.37  E-value=2.8e-06  Score=81.10  Aligned_cols=96  Identities=20%  Similarity=0.269  Sum_probs=61.6

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc-------------------------CCCC-------
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------------------------APDH-------   68 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~-------------------------~p~~-------   68 (334)
                      +|+||||||||+++|..|.+.+  .+|+|+|+.+..++...+++                         .+..       
T Consensus         1 DviIiGaG~AGl~~A~~la~~g--~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPG--LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA   78 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence            5899999999999999999886  99999998865443211110                         0110       


Q ss_pred             ---cchhHHHHHHHHHhhcCCcEEEeCeEEce--------EEecccc-eeccCeEEEeccCC
Q 019876           69 ---PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE  118 (334)
Q Consensus        69 ---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~  118 (334)
                         .....+...+.+.+...+++++.+..+..        .+...++ .+.++.||.|+|..
T Consensus        79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~  140 (388)
T TIGR01790        79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFG  140 (388)
T ss_pred             eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCc
Confidence               01123445555555666787765433221        1333344 46899999999985

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.37  E-value=3.5e-06  Score=81.95  Aligned_cols=92  Identities=18%  Similarity=0.254  Sum_probs=67.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++|+|||+|++|+.+|..+++.+  .+|+++++.+.+.        |..  ..++...+.+.+++.|++++.+..+..
T Consensus       156 ~~~~vvIIGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~GI~i~~~~~V~~  223 (438)
T PRK07251        156 LPERLGIIGGGNIGLEFAGLYNKLG--SKVTVLDAASTIL--------PRE--EPSVAALAKQYMEEDGITFLLNAHTTE  223 (438)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCccC--------CCC--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence            3579999999999999999999986  8999999987542        222  234555666778888999998865421


Q ss_pred             ------E--EecccceeccCeEEEeccCCCCCC
Q 019876           98 ------S--VSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ------~--v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                            .  +..++.+++||.||+|+|. .|..
T Consensus       224 i~~~~~~v~v~~~g~~i~~D~viva~G~-~p~~  255 (438)
T PRK07251        224 VKNDGDQVLVVTEDETYRFDALLYATGR-KPNT  255 (438)
T ss_pred             EEecCCEEEEEECCeEEEcCEEEEeeCC-CCCc
Confidence                  1  2222334689999999998 4654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.29  E-value=5.7e-06  Score=79.43  Aligned_cols=34  Identities=47%  Similarity=0.653  Sum_probs=31.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++|+||||||||++||..|++.|  ++|+|+|+.+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAG--IQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCC
Confidence            58999999999999999999997  99999998743

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK10015 oxidoreductase; Provisional

Probab=98.29  E-value=6e-06  Score=80.07  Aligned_cols=37  Identities=30%  Similarity=0.338  Sum_probs=33.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..++|+||||||||++||..|++.|  ++|+|+|+.+.+
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G--~~VlliEr~~~~   40 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSA   40 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCC
Confidence            3579999999999999999999997  999999998654

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.27  E-value=2.7e-06  Score=85.55  Aligned_cols=41  Identities=27%  Similarity=0.315  Sum_probs=36.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ...+|||||+|++|++||..+++.+  .+|+|+|+.+..||..
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~gG~~   48 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcc
Confidence            3569999999999999999999987  8999999998777654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.27  E-value=7.1e-06  Score=80.56  Aligned_cols=91  Identities=13%  Similarity=0.173  Sum_probs=67.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS   98 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~   98 (334)
                      .++|+|||+|++|+.+|..|++.+  .+|+|+++.+.+.        |.+  ..++...+.+.+++.||+++.++.+...
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--~~~~~~~l~~~l~~~gI~i~~~~~v~~i  247 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFG--VEVTVVEAADRIL--------PTE--DAELSKEVARLLKKLGVRVVTGAKVLGL  247 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccC--------CcC--CHHHHHHHHHHHHhcCCEEEeCcEEEEE
Confidence            579999999999999999999987  8999999886531        322  2356666777788889999988755211


Q ss_pred             ----------Eecccc---eeccCeEEEeccCCCCCC
Q 019876           99 ----------VSLSEL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        99 ----------v~~~~~---~~~yd~lIlATGs~~p~~  122 (334)
                                +...++   .++||.||+|+|. .|..
T Consensus       248 ~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~-~p~~  283 (472)
T PRK05976        248 TLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR-RPNT  283 (472)
T ss_pred             EEecCCCEEEEEEeCCceEEEEeCEEEEeeCC-ccCC
Confidence                      111122   3689999999999 4654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.27  E-value=6.7e-06  Score=80.44  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|++|+.+|..|++.+  .+|+++++.+.+.        |..  ..++...+.+.+++.|++++.++.+..
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~gi~i~~~~~v~~  236 (461)
T TIGR01350       169 VPESLVIIGGGVIGIEFASIFASLG--SKVTVIEMLDRIL--------PGE--DAEVSKVVAKALKKKGVKILTNTKVTA  236 (461)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCCCC--------CCC--CHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence            3579999999999999999999987  8999999987542        221  234556667778888999998876531


Q ss_pred             ------E--Eecccc---eeccCeEEEeccCCCCCCC
Q 019876           98 ------S--VSLSEL---RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 ------~--v~~~~~---~~~yd~lIlATGs~~p~~~  123 (334)
                            .  +...++   .+++|.||+|+|. .|...
T Consensus       237 i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~-~p~~~  272 (461)
T TIGR01350       237 VEKNDDQVVYENKGGETETLTGEKVLVAVGR-KPNTE  272 (461)
T ss_pred             EEEeCCEEEEEEeCCcEEEEEeCEEEEecCC-cccCC
Confidence                  1  222233   4689999999998 46543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.26  E-value=5.9e-06  Score=79.18  Aligned_cols=37  Identities=24%  Similarity=0.358  Sum_probs=33.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +++|+||||||+|+++|..|++.+++++|+|+|+.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            3689999999999999999999876799999998753

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.24  E-value=1.3e-05  Score=74.94  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=30.2

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +|+|||||.+|+++|.+|++.+  .+|+|+|++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERGD   32 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTT--SEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CeEEEEeecc
Confidence            6999999999999999999987  9999999983

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR02053 MerA mercuric reductase

Probab=98.24  E-value=1.1e-05  Score=78.95  Aligned_cols=92  Identities=14%  Similarity=0.215  Sum_probs=67.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      .++++|||+|++|+.+|..|++.+  .+|+++++.+.+.        |.+  ..++...+.+.++..||+++.++.+.. 
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~i  233 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLG--SEVTILQRSDRLL--------PRE--EPEISAAVEEALAEEGIEVVTSAQVKAV  233 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCcCC--------Ccc--CHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence            479999999999999999999987  8999999886542        321  234556677778888999998875421 


Q ss_pred             -------EEecc----cceeccCeEEEeccCCCCCCC
Q 019876           98 -------SVSLS----ELRQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 -------~v~~~----~~~~~yd~lIlATGs~~p~~~  123 (334)
                             .+.+.    ..++++|.||+|+|. .|...
T Consensus       234 ~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~-~p~~~  269 (463)
T TIGR02053       234 SVRGGGKIITVEKPGGQGEVEADELLVATGR-RPNTD  269 (463)
T ss_pred             EEcCCEEEEEEEeCCCceEEEeCEEEEeECC-CcCCC
Confidence                   12221    124689999999998 46553

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.23  E-value=9.7e-06  Score=77.24  Aligned_cols=92  Identities=18%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.. ....+...+.+.+++.|++++.++.+..
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~  208 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAG--KAVTLVDNAASLL--------ASL-MPPEVSSRLQHRLTEMGVHLLLKSQLQG  208 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCccc--------chh-CCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence            4579999999999999999999987  8999999876542        111 1234556677778888999988766531


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDR  121 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~  121 (334)
                              .+.+.++ .+++|.||+|+|. .|.
T Consensus       209 i~~~~~~~~v~~~~g~~i~~D~vI~a~G~-~p~  240 (377)
T PRK04965        209 LEKTDSGIRATLDSGRSIEVDAVIAAAGL-RPN  240 (377)
T ss_pred             EEccCCEEEEEEcCCcEEECCEEEECcCC-Ccc
Confidence                    1333333 3689999999998 454

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.23  E-value=1.1e-05  Score=78.92  Aligned_cols=92  Identities=17%  Similarity=0.269  Sum_probs=68.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|++|+.+|..+.+.+  .+|+++++.+.+.        |..  ..++...+.+.+++.||++++++.+..
T Consensus       169 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~ll--------~~~--d~e~~~~l~~~L~~~GI~i~~~~~V~~  236 (458)
T PRK06912        169 IPSSLLIVGGGVIGCEFASIYSRLG--TKVTIVEMAPQLL--------PGE--DEDIAHILREKLENDGVKIFTGAALKG  236 (458)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------ccc--cHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence            3579999999999999999999986  8999999876542        322  245666777778888999998876531


Q ss_pred             ------EEecc-cc---eeccCeEEEeccCCCCCC
Q 019876           98 ------SVSLS-EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ------~v~~~-~~---~~~yd~lIlATGs~~p~~  122 (334)
                            .+.+. ++   +++||.||+|+|. .|+.
T Consensus       237 i~~~~~~v~~~~~g~~~~i~~D~vivA~G~-~p~~  270 (458)
T PRK06912        237 LNSYKKQALFEYEGSIQEVNAEFVLVSVGR-KPRV  270 (458)
T ss_pred             EEEcCCEEEEEECCceEEEEeCEEEEecCC-ccCC
Confidence                  12221 12   3689999999998 4654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.23  E-value=4.7e-06  Score=86.45  Aligned_cols=36  Identities=28%  Similarity=0.531  Sum_probs=32.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      |+|+||||||||+++|..|++.+++++|+|+|+.+.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999999865699999999865

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.22  E-value=8.3e-06  Score=78.27  Aligned_cols=93  Identities=19%  Similarity=0.215  Sum_probs=67.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+|+++.+.+.+..         ....+...+.+.+++.||+++++..+..
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l~~~---------~~~~~~~~l~~~l~~~GV~i~~~~~V~~  211 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRR--CKVTVIELAATVMGRN---------APPPVQRYLLQRHQQAGVRILLNNAIEH  211 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCcchhhh---------cCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence            3579999999999999999999987  8999999877542211         1234555666777788999998876531


Q ss_pred             -------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 -------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                             .+.+.++ .+.+|.||+|+|. .|+.
T Consensus       212 i~~~~~~~v~l~~g~~i~aD~Vv~a~G~-~pn~  243 (396)
T PRK09754        212 VVDGEKVELTLQSGETLQADVVIYGIGI-SAND  243 (396)
T ss_pred             EEcCCEEEEEECCCCEEECCEEEECCCC-Chhh
Confidence                   1233333 3589999999998 4553

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=98.22  E-value=2.1e-06  Score=77.57  Aligned_cols=40  Identities=25%  Similarity=0.384  Sum_probs=35.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++.+|+|||||.+|+.+|..+.++.+.-+|.|+|+.+.
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            3467899999999999999999988876789999998754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.21  E-value=1.2e-05  Score=78.77  Aligned_cols=92  Identities=21%  Similarity=0.268  Sum_probs=68.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |.+  ..++...+.+.+++.|++++.+..+..
T Consensus       171 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~gV~i~~~~~V~~  238 (462)
T PRK06416        171 VPKSLVVIGGGYIGVEFASAYASLG--AEVTIVEALPRIL--------PGE--DKEISKLAERALKKRGIKIKTGAKAKK  238 (462)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCcC--------CcC--CHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence            3579999999999999999999987  8999999987642        321  235666777778888999998876521


Q ss_pred             --------EEeccc----ceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSE----LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~----~~~~yd~lIlATGs~~p~~  122 (334)
                              .+...+    ..++||.||+|+|. .|..
T Consensus       239 i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~-~p~~  274 (462)
T PRK06416        239 VEQTDDGVTVTLEDGGKEETLEADYVLVAVGR-RPNT  274 (462)
T ss_pred             EEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC-ccCC
Confidence                    122222    23589999999998 4654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.21  E-value=1e-05  Score=78.71  Aligned_cols=92  Identities=18%  Similarity=0.203  Sum_probs=68.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      .++|+|||+|++|+.+|..+++.+  .+|+++++.+.+.        +. ....++...+.+.+++.|++++.++.+.. 
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~-~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i  217 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLG--KNVRIIQLEDRIL--------PD-SFDKEITDVMEEELRENGVELHLNEFVKSL  217 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC--CcEEEEeCCcccC--------ch-hcCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence            579999999999999999999987  8999998876431        11 01245667777888889999998876532 


Q ss_pred             -------EEecccceeccCeEEEeccCCCCCC
Q 019876           98 -------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                             .+..++.++.+|.||+|+|. .|..
T Consensus       218 ~~~~~~~~v~~~~~~i~~d~vi~a~G~-~p~~  248 (444)
T PRK09564        218 IGEDKVEGVVTDKGEYEADVVIVATGV-KPNT  248 (444)
T ss_pred             ecCCcEEEEEeCCCEEEcCEEEECcCC-CcCH
Confidence                   12233445789999999998 4553

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.19  E-value=1.9e-06  Score=83.62  Aligned_cols=40  Identities=38%  Similarity=0.437  Sum_probs=32.9

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      +|||||||+||++||..+++.|  .+|+|+|+.+.+||....
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G--~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAG--AKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT--S-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCC--CEEEEEECCccCCCcceE
Confidence            6999999999999999999997  999999999999887644

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.18  E-value=1.1e-05  Score=78.59  Aligned_cols=91  Identities=12%  Similarity=0.106  Sum_probs=68.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      ..+++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        +.  ...++...+.+.+++.||+++.+..+.. 
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~l~--------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i  215 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERG--LHPTLIHRSDKIN--------KL--MDADMNQPILDELDKREIPYRLNEEIDAI  215 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CcEEEEecccccc--------hh--cCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence            479999999999999999999987  8999999876532        21  1235666777778888999998876532 


Q ss_pred             ---EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 ---SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                         .+.+.++ ..++|.|++|+|. .|+.
T Consensus       216 ~~~~v~~~~g~~~~~D~vl~a~G~-~pn~  243 (438)
T PRK13512        216 NGNEVTFKSGKVEHYDMIIEGVGT-HPNS  243 (438)
T ss_pred             eCCEEEECCCCEEEeCEEEECcCC-CcCh
Confidence               2333333 3589999999998 4654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.18  E-value=1.4e-05  Score=77.44  Aligned_cols=93  Identities=16%  Similarity=0.133  Sum_probs=67.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|++|+.+|..|++.+  .+|+++++.+.+..       +.+  ..++...+.+.+++.||+++.+..+..
T Consensus       136 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~~~-------~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~  204 (427)
T TIGR03385       136 KVENVVIIGGGYIGIEMAEALRERG--KNVTLIHRSERILN-------KLF--DEEMNQIVEEELKKHEINLRLNEEVDS  204 (427)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccCc-------ccc--CHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence            3579999999999999999999987  89999998765410       111  234556677778888999998876531


Q ss_pred             -----E-Eecc-cceeccCeEEEeccCCCCCC
Q 019876           98 -----S-VSLS-ELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -----~-v~~~-~~~~~yd~lIlATGs~~p~~  122 (334)
                           . +... ...++||.||+|+|. .|..
T Consensus       205 i~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~  235 (427)
T TIGR03385       205 IEGEERVKVFTSGGVYQADMVILATGI-KPNS  235 (427)
T ss_pred             EecCCCEEEEcCCCEEEeCEEEECCCc-cCCH
Confidence                 1 1222 234689999999998 4553

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.17  E-value=1.2e-05  Score=76.95  Aligned_cols=32  Identities=31%  Similarity=0.538  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ++|+||||||||+++|..|++.|  ++|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G--~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAG--IETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECC
Confidence            48999999999999999999997  999999987

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06834 hypothetical protein; Provisional

Probab=98.17  E-value=2e-05  Score=77.70  Aligned_cols=36  Identities=31%  Similarity=0.526  Sum_probs=32.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +..+|+||||||+|+++|..|++.|  .+|+|+|+.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G--~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAG--VDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence            3479999999999999999999997  99999998753

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.17  E-value=9.8e-06  Score=75.61  Aligned_cols=34  Identities=41%  Similarity=0.648  Sum_probs=29.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++|+|||||++|+++|..|++.|  ++|+|||+.+.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcc--cccccchhccc
Confidence            58999999999999999999998  99999999854

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.16  E-value=1.2e-05  Score=76.66  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+||||||||+++|..|.+.|  .+|+|+|+.+.+
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~   40 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSG--LRVALLAPRAPP   40 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCc
Confidence            468999999999999999999987  999999988654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.16  E-value=9.8e-06  Score=77.88  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=31.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|+|||||++|+++|..|.+.|  ++|+|||+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSG--LEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence            368999999999999999999987  9999999875

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.16  E-value=1.8e-05  Score=77.77  Aligned_cols=93  Identities=17%  Similarity=0.279  Sum_probs=67.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++|+|||+|+.|+.+|..|++.+  .+|+|+++.+.+.        |..  ..++...+.+.++..|++++.++.+..
T Consensus       182 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~~~~~l~~~gi~i~~~~~v~~  249 (475)
T PRK06327        182 VPKKLAVIGAGVIGLELGSVWRRLG--AEVTILEALPAFL--------AAA--DEQVAKEAAKAFTKQGLDIHLGVKIGE  249 (475)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCccC--------CcC--CHHHHHHHHHHHHHcCcEEEeCcEEEE
Confidence            3579999999999999999999987  8999999877531        221  235556666777788999998865421


Q ss_pred             --------EEeccc-----ceeccCeEEEeccCCCCCCC
Q 019876           98 --------SVSLSE-----LRQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 --------~v~~~~-----~~~~yd~lIlATGs~~p~~~  123 (334)
                              .+...+     ..+++|.|++|+|. .|...
T Consensus       250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~-~p~~~  287 (475)
T PRK06327        250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR-VPNTD  287 (475)
T ss_pred             EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC-ccCCC
Confidence                    122222     23689999999998 46643

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.15  E-value=1.3e-05  Score=66.72  Aligned_cols=33  Identities=24%  Similarity=0.611  Sum_probs=29.3

Q ss_pred             EEECCchHHHHHHHHHhhc---CCCCeEEEEcCCCC
Q 019876           23 CVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPT   55 (334)
Q Consensus        23 vIIGaG~aGl~aA~~l~~~---~~~~~v~vie~~~~   55 (334)
                      +|||+|++|++++..|.+.   .+..+|+|||+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            6999999999999999988   35799999999765

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.15  E-value=2e-05  Score=76.77  Aligned_cols=92  Identities=13%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|+.|+.+|..|.+.+  .+|+|+++.+.+        .|.+  ..++...+.+.+++.|++++++..+..
T Consensus       157 ~~~~v~ViGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~--------l~~~--~~~~~~~l~~~l~~~gV~v~~~~~v~~  224 (441)
T PRK08010        157 LPGHLGILGGGYIGVEFASMFANFG--SKVTILEAASLF--------LPRE--DRDIADNIATILRDQGVDIILNAHVER  224 (441)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCC--------CCCc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence            4579999999999999999999987  999999987643        1332  235566677788888999998876531


Q ss_pred             --------EEecccceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                              .+...+.+..+|.|++|+|. .|+.
T Consensus       225 i~~~~~~v~v~~~~g~i~~D~vl~a~G~-~pn~  256 (441)
T PRK08010        225 ISHHENQVQVHSEHAQLAVDALLIASGR-QPAT  256 (441)
T ss_pred             EEEcCCEEEEEEcCCeEEeCEEEEeecC-CcCC
Confidence                    12223345689999999998 4654

>PRK06370 mercuric reductase; Validated

Probab=98.15  E-value=1.8e-05  Score=77.52  Aligned_cols=92  Identities=18%  Similarity=0.228  Sum_probs=68.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++|+|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |..  ..++...+.+.++..|+++++++.+..
T Consensus       170 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~GV~i~~~~~V~~  237 (463)
T PRK06370        170 LPEHLVIIGGGYIGLEFAQMFRRFG--SEVTVIERGPRLL--------PRE--DEDVAAAVREILEREGIDVRLNAECIR  237 (463)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCCC--------ccc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence            3579999999999999999999987  8999999887542        221  234556677778888999998865521


Q ss_pred             --------EEec---c-cceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSL---S-ELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~---~-~~~~~yd~lIlATGs~~p~~  122 (334)
                              .+..   . ...+++|.||+|+|. .|+.
T Consensus       238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~-~pn~  273 (463)
T PRK06370        238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGR-VPNT  273 (463)
T ss_pred             EEEcCCEEEEEEEeCCCceEEEeCEEEECcCC-CcCC
Confidence                    1222   1 124689999999998 4654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.14  E-value=1.8e-05  Score=77.55  Aligned_cols=92  Identities=18%  Similarity=0.246  Sum_probs=68.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|+.|+.+|..|++.+  .+|+|+++.+.+.        |..  ..++...+.+.+++.||+++.++.+..
T Consensus       171 ~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~  238 (466)
T PRK07818        171 LPKSIVIAGAGAIGMEFAYVLKNYG--VDVTIVEFLDRAL--------PNE--DAEVSKEIAKQYKKLGVKILTGTKVES  238 (466)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Ccc--CHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence            3579999999999999999999987  8999999876531        332  235666777888888999998876521


Q ss_pred             --------EEecc--cc---eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS--EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~--~~---~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.  ++   .+++|.||+|+|. .|..
T Consensus       239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~-~pn~  275 (466)
T PRK07818        239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF-APRV  275 (466)
T ss_pred             EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc-ccCC
Confidence                    12221  22   3689999999998 4654

>PRK06184 hypothetical protein; Provisional

Probab=98.14  E-value=1.9e-05  Score=78.18  Aligned_cols=35  Identities=26%  Similarity=0.501  Sum_probs=32.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+||||||+|+++|..|++.|  ++|+|||+.+.
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~G--i~v~viE~~~~   37 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRG--VSFRLIEKAPE   37 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence            478999999999999999999997  99999999754

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.14  E-value=7.9e-06  Score=77.64  Aligned_cols=89  Identities=20%  Similarity=0.251  Sum_probs=70.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcC-----------CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAH-----------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS   88 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~-----------~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~   88 (334)
                      .+|+|+|||+.|+..|-.|...-           .+.+|+|+|+.+.+        .|.+  ++++..+..+.+++.||+
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I--------Lp~~--~~~l~~~a~~~L~~~GV~  225 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI--------LPMF--PPKLSKYAERALEKLGVE  225 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------ccCC--CHHHHHHHHHHHHHCCCE
Confidence            47999999999999999886542           12599999998864        3543  456788888999999999


Q ss_pred             EEeCeEEce----EEecccce--eccCeEEEeccCC
Q 019876           89 FFGNVTLGS----SVSLSELR--QLYHVVVLAYGAE  118 (334)
Q Consensus        89 ~~~~~~v~~----~v~~~~~~--~~yd~lIlATGs~  118 (334)
                      +.+++.|..    .++++++.  ++++.+|.|+|..
T Consensus       226 v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~  261 (405)
T COG1252         226 VLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVR  261 (405)
T ss_pred             EEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCc
Confidence            999988742    35555443  8999999999984

>PRK14694 putative mercuric reductase; Provisional

Probab=98.14  E-value=2e-05  Score=77.39  Aligned_cols=90  Identities=13%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      +++++|||+|+.|+.+|..|++.+  .+|+++++...+         |.  ...++...+.+.+++.||+++.+..+.. 
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g--~~Vtlv~~~~~l---------~~--~~~~~~~~l~~~l~~~GI~v~~~~~v~~i  244 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLG--SRVTVLARSRVL---------SQ--EDPAVGEAIEAAFRREGIEVLKQTQASEV  244 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEECCCCC---------CC--CCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence            579999999999999999999987  899999864211         22  1235666777888888999998865531 


Q ss_pred             -------EEecccceeccCeEEEeccCCCCCC
Q 019876           98 -------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                             .+...+..+++|.||+|+|. .|+.
T Consensus       245 ~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~  275 (468)
T PRK14694        245 DYNGREFILETNAGTLRAEQLLVATGR-TPNT  275 (468)
T ss_pred             EEcCCEEEEEECCCEEEeCEEEEccCC-CCCc
Confidence                   12223345789999999998 4655

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.14  E-value=1.6e-05  Score=76.11  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      +++|+|||||++|+++|..|++.|  ++|+|||+.+.+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~~   39 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAEI   39 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCccc
Confidence            579999999999999999999987  999999998653

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.13  E-value=1.3e-05  Score=76.70  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...+|+||||||+|+++|..|.+.|  .+|+|+|+.+.
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~~   40 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAG--LSVALVEGREP   40 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCCC
Confidence            4579999999999999999999997  99999999753

>PRK07236 hypothetical protein; Provisional

Probab=98.13  E-value=1e-05  Score=77.24  Aligned_cols=36  Identities=31%  Similarity=0.471  Sum_probs=32.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||||++|+++|..|++.|  ++|+|+|+.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence            4589999999999999999999997  99999999763

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.13  E-value=2.1e-05  Score=76.73  Aligned_cols=91  Identities=12%  Similarity=0.122  Sum_probs=68.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      +++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.+  ..++...+.+.+++.||+++.++.+.. 
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--d~~~~~~~~~~l~~~gI~i~~~~~v~~i  233 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLG--SETHLVIRHERVL--------RSF--DSMISETITEEYEKEGINVHKLSKPVKV  233 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCC--------ccc--CHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence            579999999999999999999987  8999999886542        222  345666777788888999998865421 


Q ss_pred             --------EEecccc--eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSEL--RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~--~~~yd~lIlATGs~~p~~  122 (334)
                              .+...++  ..++|.||+|+|. .|..
T Consensus       234 ~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~-~pn~  267 (450)
T TIGR01421       234 EKTVEGKLVIHFEDGKSIDDVDELIWAIGR-KPNT  267 (450)
T ss_pred             EEeCCceEEEEECCCcEEEEcCEEEEeeCC-CcCc
Confidence                    1223333  3589999999998 4654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.12  E-value=3e-06  Score=81.55  Aligned_cols=43  Identities=26%  Similarity=0.466  Sum_probs=40.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      ++|+|||||.+||+||..|.+.+|+.+++|||+.+..||++..
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T   43 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT   43 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence            5899999999999999999999999999999999999998754

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.12  E-value=2.8e-05  Score=75.84  Aligned_cols=36  Identities=39%  Similarity=0.550  Sum_probs=32.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...++|+||||||||++||..|++.|  ++|+|+|+.+
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~   72 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKL   72 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence            35689999999999999999999997  9999999874

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.12  E-value=3.2e-06  Score=82.19  Aligned_cols=42  Identities=19%  Similarity=0.362  Sum_probs=38.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ++|+|||||.|||+||..|.+.|++.+|+|+|+++.+||.+.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~   42 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ   42 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence            589999999999999999999865689999999999998764

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.11  E-value=1.6e-05  Score=75.26  Aligned_cols=29  Identities=38%  Similarity=0.423  Sum_probs=25.6

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIID   51 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie   51 (334)
                      +|+|||||+||..||..+++.|  .+|.|+.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G--~~V~Lit   29 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMG--AKVLLIT   29 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT----EEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCEEEEe
Confidence            6999999999999999999998  9999994

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.11  E-value=2.4e-05  Score=76.29  Aligned_cols=92  Identities=21%  Similarity=0.157  Sum_probs=68.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..+++.+  .+|+++++.+.+.        +.+  ..++...+.+.+++.|++++.+..+..
T Consensus       165 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~  232 (446)
T TIGR01424       165 LPKSILILGGGYIAVEFAGIWRGLG--VQVTLIYRGELIL--------RGF--DDDMRALLARNMEGRGIRIHPQTSLTS  232 (446)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEeCCCCC--------ccc--CHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            3578999999999999999999987  8999999876531        221  245666677778888999998875421


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                              .+...++ .+++|.||+|+|. .|..
T Consensus       233 i~~~~~~~~v~~~~g~~i~~D~viva~G~-~pn~  265 (446)
T TIGR01424       233 ITKTDDGLKVTLSHGEEIVADVVLFATGR-SPNT  265 (446)
T ss_pred             EEEcCCeEEEEEcCCcEeecCEEEEeeCC-CcCC
Confidence                    1223233 3689999999998 4654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.10  E-value=3.6e-06  Score=82.63  Aligned_cols=45  Identities=20%  Similarity=0.222  Sum_probs=40.3

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ...+.++|+|||||.|||+||.+|...|  .+|+|+|.++.+||.+.
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~   55 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIY   55 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeE
Confidence            3445689999999999999999999998  99999999999998764

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.09  E-value=2.6e-05  Score=74.68  Aligned_cols=36  Identities=17%  Similarity=0.346  Sum_probs=32.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+|+|||||.+|+++|.+|+++.|+.+|+|+|+.+.
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            689999999999999999999844599999999753

>PLN02697 lycopene epsilon cyclase

Probab=98.09  E-value=2.9e-05  Score=76.93  Aligned_cols=100  Identities=21%  Similarity=0.279  Sum_probs=61.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC---cccccc-----cc--------------CCCC-------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRS-----GV--------------APDH-------   68 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~---gg~~~~-----~~--------------~p~~-------   68 (334)
                      ..++|+||||||||+++|..|.+.+  ++|+|+|+....   +|.|..     ++              .+..       
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~G--l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~  184 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGR  184 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCC--CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccC
Confidence            4589999999999999999999987  999999975321   333310     00              0000       


Q ss_pred             ----cchhHHHHHHHHHhhcCCcEEEeCeEEce-------E-Eecc-cceeccCeEEEeccCCC
Q 019876           69 ----PETKIVINQFSRVVQHERCSFFGNVTLGS-------S-VSLS-ELRQLYHVVVLAYGAES  119 (334)
Q Consensus        69 ----~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-------~-v~~~-~~~~~yd~lIlATGs~~  119 (334)
                          .....+...+.+.+...|+++........       . +... +..+.++.||.|+|..+
T Consensus       185 ~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        185 AYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             cccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence                11123444555555667888744322211       1 1222 23468999999999854

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.08  E-value=2.7e-05  Score=76.15  Aligned_cols=92  Identities=14%  Similarity=0.118  Sum_probs=68.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|+.|+.+|..+++.+  .+|+++++.+.+.        |.  ...++...+.+.+++.|++++.++.+..
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gI~v~~~~~v~~  241 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIFAALG--VKVTLINTRDRLL--------SF--LDDEISDALSYHLRDSGVTIRHNEEVEK  241 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence            3589999999999999999999987  9999999887542        22  1245666777778888999998866531


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                              .+...++ .+++|.||+|+|. .|+.
T Consensus       242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~  274 (461)
T PRK05249        242 VEGGDDGVIVHLKSGKKIKADCLLYANGR-TGNT  274 (461)
T ss_pred             EEEeCCeEEEEECCCCEEEeCEEEEeecC-Cccc
Confidence                    1222222 3689999999998 4654

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.08  E-value=2.9e-05  Score=77.43  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||||+||+.||..+++.|  .+|.|+|+..
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G--~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMG--AKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcC--CcEEEEeccc
Confidence            3579999999999999999999997  9999999873

>PRK14727 putative mercuric reductase; Provisional

Probab=98.08  E-value=3.3e-05  Score=76.01  Aligned_cols=90  Identities=13%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      +++++|||+|+.|+.+|..+.+.+  .+|+++++.. +        .+.  ...++...+.+.+++.|++++++..+.. 
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G--~~Vtlv~~~~-~--------l~~--~d~~~~~~l~~~L~~~GV~i~~~~~V~~i  254 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLG--SRVTILARST-L--------LFR--EDPLLGETLTACFEKEGIEVLNNTQASLV  254 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCC-C--------CCc--chHHHHHHHHHHHHhCCCEEEcCcEEEEE
Confidence            479999999999999999999987  8999998642 1        122  1335666777788888999998876521 


Q ss_pred             -------EEecccceeccCeEEEeccCCCCCC
Q 019876           98 -------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                             .+...+.++.+|.||+|+|. .|+.
T Consensus       255 ~~~~~~~~v~~~~g~i~aD~VlvA~G~-~pn~  285 (479)
T PRK14727        255 EHDDNGFVLTTGHGELRAEKLLISTGR-HANT  285 (479)
T ss_pred             EEeCCEEEEEEcCCeEEeCEEEEccCC-CCCc
Confidence                   12233445689999999998 4654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.08  E-value=3.2e-05  Score=75.85  Aligned_cols=92  Identities=17%  Similarity=0.225  Sum_probs=67.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++|+|||+|+.|+.+|..+.+.+  .+|+++++.+.+.        |.+  ..++...+.+.+++.||+++.++.+..
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G--~~Vtlie~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~  240 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLG--AQVTVVEYLDRIC--------PGT--DTETAKTLQKALTKQGMKFKLGSKVTG  240 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCCCC--------CCC--CHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence            4689999999999999999999987  8999999876541        322  234556677778888999998865421


Q ss_pred             --------EEecc---c---ceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS---E---LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~---~---~~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.   +   ..+++|.|++|+|. .|..
T Consensus       241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~-~pn~  278 (466)
T PRK06115        241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR-RPYT  278 (466)
T ss_pred             EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC-cccc
Confidence                    11221   1   23589999999998 4654

>PRK06116 glutathione reductase; Validated

Probab=98.07  E-value=3.5e-05  Score=75.19  Aligned_cols=92  Identities=15%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.+  ..++...+.+.+++.|++++.++.+..
T Consensus       166 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~--~~~~~~~l~~~L~~~GV~i~~~~~V~~  233 (450)
T PRK06116        166 LPKRVAVVGAGYIAVEFAGVLNGLG--SETHLFVRGDAPL--------RGF--DPDIRETLVEEMEKKGIRLHTNAVPKA  233 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCc--------ccc--CHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence            3579999999999999999999987  8999999876531        221  235666777778888999998876521


Q ss_pred             ---------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                               .+...++ .+++|.||+|+|. .|..
T Consensus       234 i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~-~p~~  267 (450)
T PRK06116        234 VEKNADGSLTLTLEDGETLTVDCLIWAIGR-EPNT  267 (450)
T ss_pred             EEEcCCceEEEEEcCCcEEEeCEEEEeeCC-CcCC
Confidence                     1222222 3589999999998 4654

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.06  E-value=4.6e-06  Score=82.18  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=39.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      +.++|||||||++||+||.+|++.|  ++|+|+|+++.+||..+.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~GG~a~t   44 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVGGRART   44 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCCcceEE
Confidence            4689999999999999999999998  999999999999997644

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.06  E-value=2.4e-05  Score=74.76  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=32.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||||++|+++|..|.+.|  ++|+|||+.+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHG--FSVAVLEHAA   38 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence            4579999999999999999999987  9999999874

>PRK13748 putative mercuric reductase; Provisional

Probab=98.05  E-value=3.2e-05  Score=77.60  Aligned_cols=91  Identities=13%  Similarity=0.137  Sum_probs=68.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|+.|+.+|..|.+.+  .+|+|+++...         .+.+  ..++...+.+.+++.||+++.+..+..
T Consensus       269 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~---------l~~~--d~~~~~~l~~~l~~~gI~i~~~~~v~~  335 (561)
T PRK13748        269 IPERLAVIGSSVVALELAQAFARLG--SKVTILARSTL---------FFRE--DPAIGEAVTAAFRAEGIEVLEHTQASQ  335 (561)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCcc---------cccc--CHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence            3579999999999999999999987  89999987431         1221  245667777888888999998876531


Q ss_pred             --------EEecccceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                              .+...+..+.+|.||+|+|. .|+.
T Consensus       336 i~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~  367 (561)
T PRK13748        336 VAHVDGEFVLTTGHGELRADKLLVATGR-APNT  367 (561)
T ss_pred             EEecCCEEEEEecCCeEEeCEEEEccCC-CcCC
Confidence                    12223345789999999998 4665

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.04  E-value=3.9e-05  Score=75.09  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=32.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..+|+|||||.+|+++|.+|++.+|+.+|+|+|++.
T Consensus        24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            468999999999999999999985569999999874

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.04  E-value=3.7e-05  Score=74.08  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=31.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|+|||+|++|+.+|..+.+.+  .+|+||++..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g--~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAG--KRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCC--CcEEEEECCC
Confidence            468999999999999999999997  9999999863

>PLN02507 glutathione reductase

Probab=98.03  E-value=4e-05  Score=75.80  Aligned_cols=91  Identities=20%  Similarity=0.169  Sum_probs=68.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      .++++|||+|+.|+.+|..+++.+  .+|+|+++.+.+.        +.  ...++...+.+.+++.||+++.++.+.. 
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~V~~i  270 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMG--ATVDLFFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTNLTQL  270 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEecCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence            579999999999999999999987  8999999876531        22  1245666677778888999998876531 


Q ss_pred             -------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 -------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                             .+...++ .+++|.|++|+|. .|..
T Consensus       271 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~  302 (499)
T PLN02507        271 TKTEGGIKVITDHGEEFVADVVLFATGR-APNT  302 (499)
T ss_pred             EEeCCeEEEEECCCcEEEcCEEEEeecC-CCCC
Confidence                   1222233 3689999999998 4654

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.02  E-value=4e-05  Score=72.96  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .+|+|||||++|+++|..|++.|  ++|+|+|+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~   33 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKG--IKTTIFESK   33 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCC--CeEEEecCC
Confidence            58999999999999999999987  999999975

>PRK08244 hypothetical protein; Provisional

Probab=98.02  E-value=3.5e-05  Score=76.11  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=31.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+|+||||||+|+++|..|.+.|  ++|+|||+.+.
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G--~~v~viEr~~~   36 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAG--VKTCVIERLKE   36 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence            68999999999999999999997  99999998754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.01  E-value=5.1e-05  Score=74.45  Aligned_cols=92  Identities=17%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      +++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |.+  ..++...+.+.+++.||+++.+..+.. 
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~v  244 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELG--VKVTLVSSRDRVL--------PGE--DADAAEVLEEVFARRGMTVLKRSRAESV  244 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCcCC--------CCC--CHHHHHHHHHHHHHCCcEEEcCCEEEEE
Confidence            479999999999999999999987  8999999876532        322  234556777788888999998865421 


Q ss_pred             -------EEecccc-eeccCeEEEeccCCCCCCC
Q 019876           98 -------SVSLSEL-RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 -------~v~~~~~-~~~yd~lIlATGs~~p~~~  123 (334)
                             .+...++ ++++|.||+|+|. .|...
T Consensus       245 ~~~~~~~~v~~~~g~~l~~D~vl~a~G~-~pn~~  277 (466)
T PRK07845        245 ERTGDGVVVTLTDGRTVEGSHALMAVGS-VPNTA  277 (466)
T ss_pred             EEeCCEEEEEECCCcEEEecEEEEeecC-CcCCC
Confidence                   1222222 3589999999998 46553

>PRK07588 hypothetical protein; Provisional

Probab=98.01  E-value=4.4e-05  Score=72.98  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++|+|||||++|+++|..|++.|  ++|+|+|+.+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence            58999999999999999999987  99999998754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.00  E-value=4.8e-05  Score=76.02  Aligned_cols=37  Identities=30%  Similarity=0.491  Sum_probs=33.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...++|+||||||+|+++|..|.+.|  ++|+|||+.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G--~~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYG--VRVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence            35679999999999999999999987  99999999864

>PRK11445 putative oxidoreductase; Provisional

Probab=98.00  E-value=5.4e-05  Score=71.44  Aligned_cols=33  Identities=30%  Similarity=0.351  Sum_probs=29.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +++|+||||||||+++|..|++.   ++|+|+|+.+
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~   33 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK---MKVIAIDKKH   33 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc---CCEEEEECCC
Confidence            36899999999999999999875   7999999876

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.98  E-value=4.6e-05  Score=75.07  Aligned_cols=91  Identities=16%  Similarity=0.155  Sum_probs=66.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-   96 (334)
                      .+.+++|||+|+.|+.+|..|++.+  .+|+++++. .+        .|.+  ..++...+.+.+++.||+++++..+. 
T Consensus       179 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~--------l~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~  245 (484)
T TIGR01438       179 CPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRS-IL--------LRGF--DQDCANKVGEHMEEHGVKFKRQFVPIK  245 (484)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhC--CcEEEEEec-cc--------cccc--CHHHHHHHHHHHHHcCCEEEeCceEEE
Confidence            3468999999999999999999987  899999863 22        1322  34566677788888899999886431 


Q ss_pred             -------eEEecccc----eeccCeEEEeccCCCCCC
Q 019876           97 -------SSVSLSEL----RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 -------~~v~~~~~----~~~yd~lIlATGs~~p~~  122 (334)
                             ..+...+.    ++++|.||+|+|. .|..
T Consensus       246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~-~pn~  281 (484)
T TIGR01438       246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR-DACT  281 (484)
T ss_pred             EEEcCCeEEEEEecCCcceEEEeCEEEEEecC-CcCC
Confidence                   12333222    4689999999998 4654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.97  E-value=4.3e-05  Score=72.96  Aligned_cols=91  Identities=20%  Similarity=0.241  Sum_probs=69.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-e
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-S   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-~   97 (334)
                      .++++|||+|++|+.+|.++++.|  .+|+++|..+.+++....         .++...+.+.++..+|+++.+..+. .
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G--~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i  204 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRG--KKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGV  204 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence            579999999999999999999998  999999999887654421         3566677888888899998776642 1


Q ss_pred             E----------Eecc-cceeccCeEEEeccCCCCC
Q 019876           98 S----------VSLS-ELRQLYHVVVLAYGAESDR  121 (334)
Q Consensus        98 ~----------v~~~-~~~~~yd~lIlATGs~~p~  121 (334)
                      .          +... ....++|.+++++|. .|.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~-~p~  238 (415)
T COG0446         205 EGKGNTLVVERVVGIDGEEIKADLVIIGPGE-RPN  238 (415)
T ss_pred             EcccCcceeeEEEEeCCcEEEeeEEEEeecc-ccc
Confidence            1          1222 223579999999999 464

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.97  E-value=4e-05  Score=79.84  Aligned_cols=93  Identities=14%  Similarity=0.172  Sum_probs=68.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+|+++.+.+.        +. .........+.+.+++.||+++++..+..
T Consensus       139 ~~k~vvVVGgG~~GlE~A~~L~~~G--~~Vtvv~~~~~ll--------~~-~ld~~~~~~l~~~l~~~GV~v~~~~~v~~  207 (785)
T TIGR02374       139 RFKKAAVIGGGLLGLEAAVGLQNLG--MDVSVIHHAPGLM--------AK-QLDQTAGRLLQRELEQKGLTFLLEKDTVE  207 (785)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEccCCchh--------hh-hcCHHHHHHHHHHHHHcCCEEEeCCceEE
Confidence            3578999999999999999999997  8999999876531        11 11234555667778888999998875421


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.++ .+++|.||+|+|. .|+.
T Consensus       208 i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~-~Pn~  240 (785)
T TIGR02374       208 IVGATKADRIRFKDGSSLEADLIVMAAGI-RPND  240 (785)
T ss_pred             EEcCCceEEEEECCCCEEEcCEEEECCCC-CcCc
Confidence                    2333444 4689999999998 4654

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.97  E-value=5.6e-05  Score=73.21  Aligned_cols=91  Identities=18%  Similarity=0.194  Sum_probs=67.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcC------------CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC   87 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~------------~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i   87 (334)
                      ++++|||+|+.|+.+|..|....            ++.+|+|+++.+.+.        |.+  .+.+.....+.+++.||
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--------~~~--~~~~~~~~~~~L~~~gV  243 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--------GSF--DQALRKYGQRRLRRLGV  243 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--------ccC--CHHHHHHHHHHHHHCCC
Confidence            48999999999999999887521            248999999876542        221  24566777888889999


Q ss_pred             EEEeCeEEce----EEecccc-eeccCeEEEeccCCCCC
Q 019876           88 SFFGNVTLGS----SVSLSEL-RQLYHVVVLAYGAESDR  121 (334)
Q Consensus        88 ~~~~~~~v~~----~v~~~~~-~~~yd~lIlATGs~~p~  121 (334)
                      +++.+..+..    .+.++++ ++++|.+|+|+|. .|.
T Consensus       244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~-~~~  281 (424)
T PTZ00318        244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGV-GPG  281 (424)
T ss_pred             EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCC-CCc
Confidence            9998876632    3445444 4689999999997 454

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.96  E-value=4.3e-05  Score=79.93  Aligned_cols=93  Identities=14%  Similarity=0.168  Sum_probs=68.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+|++..+.+.        |. ....+....+.+.+++.||+++++..+..
T Consensus       144 ~~k~vvVIGgG~iGlE~A~~L~~~G--~~VtvVe~~~~ll--------~~-~ld~~~~~~l~~~L~~~GV~v~~~~~v~~  212 (847)
T PRK14989        144 RSKRGAVVGGGLLGLEAAGALKNLG--VETHVIEFAPMLM--------AE-QLDQMGGEQLRRKIESMGVRVHTSKNTLE  212 (847)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeccccch--------hh-hcCHHHHHHHHHHHHHCCCEEEcCCeEEE
Confidence            3578999999999999999999997  8999999876531        21 12345566777788889999998875421


Q ss_pred             ----------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 ----------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ----------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                                .+.+.++ .+++|.||+|+|. .|+.
T Consensus       213 I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~-rPn~  247 (847)
T PRK14989        213 IVQEGVEARKTMRFADGSELEVDFIVFSTGI-RPQD  247 (847)
T ss_pred             EEecCCCceEEEEECCCCEEEcCEEEECCCc-ccCc
Confidence                      1223333 3689999999998 4654

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.95  E-value=1.7e-05  Score=75.42  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=55.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--ccCCCCc-chhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GVAPDHP-ETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~~p~~~-~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ..++++|||||+||++||..|+..|  ++++|+|+++.+||.+.-  .++|... ..=-+...+.+...+.++++++...
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G--~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae  200 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMG--FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAE  200 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcC--CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeee
Confidence            4579999999999999999999998  999999999999987532  2333220 0112333455666677788877766


Q ss_pred             E
Q 019876           95 L   95 (334)
Q Consensus        95 v   95 (334)
                      |
T Consensus       201 V  201 (622)
T COG1148         201 V  201 (622)
T ss_pred             e
Confidence            5

>PRK07846 mycothione reductase; Reviewed

Probab=97.94  E-value=8.8e-05  Score=72.45  Aligned_cols=92  Identities=14%  Similarity=0.126  Sum_probs=64.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |.+  ..++...+.+.+ +.+++++.+..+..
T Consensus       165 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~~~ll--------~~~--d~~~~~~l~~l~-~~~v~i~~~~~v~~  231 (451)
T PRK07846        165 LPESLVIVGGGFIAAEFAHVFSALG--VRVTVVNRSGRLL--------RHL--DDDISERFTELA-SKRWDVRLGRNVVG  231 (451)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------ccc--CHHHHHHHHHHH-hcCeEEEeCCEEEE
Confidence            3579999999999999999999987  8999999877542        221  234444454444 35799888865521


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~~~  123 (334)
                              .+...++ .+++|.|++|+|. .|...
T Consensus       232 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~~  265 (451)
T PRK07846        232 VSQDGSGVTLRLDDGSTVEADVLLVATGR-VPNGD  265 (451)
T ss_pred             EEEcCCEEEEEECCCcEeecCEEEEEECC-ccCcc
Confidence                    1233233 3689999999998 46553

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.94  E-value=7.5e-05  Score=73.23  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=31.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +++|+|||+|.||++||..+++.+  .+|+|+|+.+.
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~G--~~V~liek~~~   35 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKG--FDVTIIGPGIK   35 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence            379999999999999999999987  99999999743

>PTZ00058 glutathione reductase; Provisional

Probab=97.93  E-value=7.5e-05  Score=74.66  Aligned_cols=91  Identities=14%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      +++|+|||+|+.|+.+|..+.+.+  .+|+++++.+.+.        |.+  ..++...+.+.+++.||+++.+..+.. 
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G--~~Vtli~~~~~il--------~~~--d~~i~~~l~~~L~~~GV~i~~~~~V~~I  304 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLG--AESYIFARGNRLL--------RKF--DETIINELENDMKKNNINIITHANVEEI  304 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC--CcEEEEEeccccc--------ccC--CHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence            689999999999999999999987  8999999876531        322  245666777778888999988876421 


Q ss_pred             --------EEec-ccc-eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSL-SEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~-~~~-~~~yd~lIlATGs~~p~~  122 (334)
                              .+.. .+. .+++|.|++|+|. .|..
T Consensus       305 ~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr-~Pn~  338 (561)
T PTZ00058        305 EKVKEKNLTIYLSDGRKYEHFDYVIYCVGR-SPNT  338 (561)
T ss_pred             EecCCCcEEEEECCCCEEEECCEEEECcCC-CCCc
Confidence                    1111 112 3689999999998 4654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.92  E-value=7.5e-05  Score=73.37  Aligned_cols=91  Identities=19%  Similarity=0.348  Sum_probs=65.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|+.|+.+|..+.+.+  .+|+|+++.+.+.        |.+  ..++...+.+.++.. ++++.+..+..
T Consensus       173 ~~~~vvIiGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~il--------~~~--d~~~~~~~~~~l~~~-v~i~~~~~v~~  239 (471)
T PRK06467        173 VPKRLLVMGGGIIGLEMGTVYHRLG--SEVDVVEMFDQVI--------PAA--DKDIVKVFTKRIKKQ-FNIMLETKVTA  239 (471)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCC--------CcC--CHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence            3579999999999999999999987  8999999887531        322  245556666677666 88888765421


Q ss_pred             --------EEeccc-----ceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSE-----LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~-----~~~~yd~lIlATGs~~p~~  122 (334)
                              .+...+     .++++|.||+|+|. .|..
T Consensus       240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~pn~  276 (471)
T PRK06467        240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR-VPNG  276 (471)
T ss_pred             EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc-cccC
Confidence                    122211     13689999999998 4654

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=1.1e-05  Score=77.72  Aligned_cols=41  Identities=29%  Similarity=0.336  Sum_probs=38.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      |||+|+|||.|||+||.+|...|  ++|+|+|.++.+||.+..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g--~~vt~~ea~~~~GGk~~s   41 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGGKVAS   41 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCC--CceEEEeccCccCceeee
Confidence            68999999999999999999998  999999999999997643

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.92  E-value=8.6e-05  Score=73.14  Aligned_cols=94  Identities=17%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcC-CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~-~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+++++|||+|+.|+.+|..+.... .+.+|+|+++.+.+.        |.+  ..++...+.+.+++.|++++.+..+.
T Consensus       186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--------~~~--d~~~~~~l~~~L~~~GI~i~~~~~v~  255 (486)
T TIGR01423       186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--------RGF--DSTLRKELTKQLRANGINIMTNENPA  255 (486)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--------ccc--CHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            3579999999999999998765541 138999999877541        322  34566777778888899999887542


Q ss_pred             e---------EEeccc-ceeccCeEEEeccCCCCCC
Q 019876           97 S---------SVSLSE-LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~~~-~~~~yd~lIlATGs~~p~~  122 (334)
                      .         .+.+.+ ..+++|.||+|+|. .|..
T Consensus       256 ~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~Pn~  290 (486)
T TIGR01423       256 KVTLNADGSKHVTFESGKTLDVDVVMMAIGR-VPRT  290 (486)
T ss_pred             EEEEcCCceEEEEEcCCCEEEcCEEEEeeCC-CcCc
Confidence            1         122222 24689999999998 4654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.91  E-value=1.9e-05  Score=78.06  Aligned_cols=47  Identities=19%  Similarity=0.318  Sum_probs=40.5

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCCCCCccccc
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~~~~gg~~~   61 (334)
                      .....++++|||||.|||+||.+|.+.+  ++.+|+|+|+.+.+||.+.
T Consensus        18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~   66 (576)
T PRK13977         18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD   66 (576)
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence            3344689999999999999999999975  5689999999999998764

>PRK07208 hypothetical protein; Provisional

Probab=97.91  E-value=1.3e-05  Score=78.70  Aligned_cols=42  Identities=33%  Similarity=0.521  Sum_probs=38.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      +.++|+|||||++||+||..|.+++  .+|+|+|+.+.+||.+.
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~~~GG~~~   44 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADPVVGGISR   44 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCceee
Confidence            4578999999999999999999987  99999999999998763

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.90  E-value=8.4e-05  Score=74.80  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||+|.||++||..+++.+++.+|+|+|+.+..
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~   40 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI   40 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence            35899999999999999999987666899999998653

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.89  E-value=9.8e-05  Score=70.38  Aligned_cols=97  Identities=16%  Similarity=0.156  Sum_probs=74.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ...+|+++|+|..|+.+|..|....  .+|++|++++.+        .|. .....+...+..++++.+++++.++.+..
T Consensus       212 ~~~~vV~vG~G~ig~Evaa~l~~~~--~~VT~V~~e~~~--------~~~-lf~~~i~~~~~~y~e~kgVk~~~~t~~s~  280 (478)
T KOG1336|consen  212 LGGKVVCVGGGFIGMEVAAALVSKA--KSVTVVFPEPWL--------LPR-LFGPSIGQFYEDYYENKGVKFYLGTVVSS  280 (478)
T ss_pred             cCceEEEECchHHHHHHHHHHHhcC--ceEEEEccCccc--------hhh-hhhHHHHHHHHHHHHhcCeEEEEecceee
Confidence            3678999999999999999999986  999999998753        132 12345777888899999999999887631


Q ss_pred             ----------EEecccce-eccCeEEEeccCCCCCCCCCC
Q 019876           98 ----------SVSLSELR-QLYHVVVLAYGAESDRALGIP  126 (334)
Q Consensus        98 ----------~v~~~~~~-~~yd~lIlATGs~~p~~~~ip  126 (334)
                                .+.+.+++ ..+|-||+.+|+ .|......
T Consensus       281 l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~-~p~t~~~~  319 (478)
T KOG1336|consen  281 LEGNSDGEVSEVKLKDGKTLEADLVVVGIGI-KPNTSFLE  319 (478)
T ss_pred             cccCCCCcEEEEEeccCCEeccCeEEEeecc-cccccccc
Confidence                      24444444 589999999999 57765544

>PLN02576 protoporphyrinogen oxidase

Probab=97.89  E-value=1.6e-05  Score=78.54  Aligned_cols=43  Identities=21%  Similarity=0.216  Sum_probs=38.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCCCccccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~~gg~~~   61 (334)
                      ...++|+|||||++||+||.+|.+. +  .+|+|+|+++.+||.+.
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g--~~v~vlEa~~rvGGr~~   53 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHG--VNVLVTEARDRVGGNIT   53 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcC--CCEEEEecCCCCCCcee
Confidence            3457999999999999999999998 6  89999999999998764

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.89  E-value=0.00011  Score=72.82  Aligned_cols=90  Identities=19%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      +++++|||+|+.|+.+|..|.+.+  .+|+|+++. .+.        +.+  ..++...+.+.+++.||+++.+..+.. 
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~l--------~~~--d~~~~~~l~~~l~~~GV~i~~~~~v~~v  248 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELG--FDVTVAVRS-IPL--------RGF--DRQCSEKVVEYMKEQGTLFLEGVVPINI  248 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcC-ccc--------ccC--CHHHHHHHHHHHHHcCCEEEcCCeEEEE
Confidence            469999999999999999999987  899999863 221        221  235666777788888999998865321 


Q ss_pred             -------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 -------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                             .+.+.++ .+.+|.||+|+|. .|+.
T Consensus       249 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~  280 (499)
T PTZ00052        249 EKMDDKIKVLFSDGTTELFDTVLYATGR-KPDI  280 (499)
T ss_pred             EEcCCeEEEEECCCCEEEcCEEEEeeCC-CCCc
Confidence                   1222222 3589999999998 4654

>PRK07233 hypothetical protein; Provisional

Probab=97.87  E-value=1.5e-05  Score=76.98  Aligned_cols=39  Identities=26%  Similarity=0.366  Sum_probs=36.3

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      +|+|||||.+||+||..|.+.|  .+|+|+|+++.+||.+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~   39 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAA   39 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCcee
Confidence            6899999999999999999997  99999999999999763

>TIGR03452 mycothione_red mycothione reductase

Probab=97.86  E-value=0.00012  Score=71.65  Aligned_cols=91  Identities=14%  Similarity=0.193  Sum_probs=63.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +..  ..++...+.+.++ .+++++++..+..
T Consensus       168 ~~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~ll--------~~~--d~~~~~~l~~~~~-~gI~i~~~~~V~~  234 (452)
T TIGR03452       168 LPESLVIVGGGYIAAEFAHVFSALG--TRVTIVNRSTKLL--------RHL--DEDISDRFTEIAK-KKWDIRLGRNVTA  234 (452)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCccc--------ccc--CHHHHHHHHHHHh-cCCEEEeCCEEEE
Confidence            3579999999999999999999987  8999999876532        211  2344445555444 4799888765421


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                              .+...++ ++++|.|++|+|. .|..
T Consensus       235 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~  267 (452)
T TIGR03452       235 VEQDGDGVTLTLDDGSTVTADVLLVATGR-VPNG  267 (452)
T ss_pred             EEEcCCeEEEEEcCCCEEEcCEEEEeecc-CcCC
Confidence                    1222223 4689999999998 4655

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.86  E-value=2e-05  Score=73.93  Aligned_cols=46  Identities=24%  Similarity=0.388  Sum_probs=42.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      ...++|+|+|||.+|+++|.+|++++|+..|+|||..++.||+++.
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            3568999999999999999999999999999999999999998865

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.86  E-value=0.00013  Score=71.29  Aligned_cols=92  Identities=18%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.  ...++...+.+.+++. ++++++..+..
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~-I~i~~~~~v~~  234 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLG--VKVTVFERGDRIL--------PL--EDPEVSKQAQKILSKE-FKIKLGAKVTS  234 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--------cc--hhHHHHHHHHHHHhhc-cEEEcCCEEEE
Confidence            4579999999999999999999987  8999999887542        22  1245666777778877 99988765521


Q ss_pred             -------EEec----cc-ceeccCeEEEeccCCCCCCC
Q 019876           98 -------SVSL----SE-LRQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 -------~v~~----~~-~~~~yd~lIlATGs~~p~~~  123 (334)
                             .+.+    .+ ..+++|.|++|+|. .|+..
T Consensus       235 i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~p~~~  271 (460)
T PRK06292        235 VEKSGDEKVEELEKGGKTETIEADYVLVATGR-RPNTD  271 (460)
T ss_pred             EEEcCCceEEEEEcCCceEEEEeCEEEEccCC-ccCCC
Confidence                   1221    11 23689999999998 46653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.86  E-value=0.00013  Score=74.26  Aligned_cols=91  Identities=18%  Similarity=0.164  Sum_probs=64.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHh-hcCCcEEEeCeEEce
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLGS   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~v~~   97 (334)
                      +++|+|||+|+.|+.+|..+.+.+  .+|+++++.+.+.        |.+  ..++...+...+ ++.||+++.+..+..
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G--~eVTLIe~~~~ll--------~~~--d~eis~~l~~~ll~~~GV~I~~~~~V~~  379 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALG--SEVVSFEYSPQLL--------PLL--DADVAKYFERVFLKSKPVRVHLNTLIEY  379 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccc--------ccC--CHHHHHHHHHHHhhcCCcEEEcCCEEEE
Confidence            579999999999999999999987  8999999987642        321  234555555543 567899998876521


Q ss_pred             --------EEec--c-------cc---------eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSL--S-------EL---------RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~--~-------~~---------~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+  .       +.         .+++|.||+|||. .|+.
T Consensus       380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr-~Pnt  429 (659)
T PTZ00153        380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR-KPNT  429 (659)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc-ccCC
Confidence                    0211  1       11         4689999999998 4664

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.86  E-value=1.7e-05  Score=77.53  Aligned_cols=43  Identities=16%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCC--CCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~--~~~v~vie~~~~~gg~~~   61 (334)
                      +++|+|||||.+||+||..|.+.+|  +.+|+|+|+++.+||.+.
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~   46 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ   46 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence            4689999999999999999999843  499999999999998764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.85  E-value=1.9e-05  Score=77.32  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=37.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcC----CCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~----~~~~v~vie~~~~~gg~~~   61 (334)
                      ++|+|||||.+||+||..|.+.+    .+.+|+|+|+++.+||.+.
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~   47 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH   47 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence            58999999999999999999863    2479999999999999764

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.85  E-value=5.1e-05  Score=70.33  Aligned_cols=93  Identities=17%  Similarity=0.260  Sum_probs=73.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .-+++++|||+|..|+..+.-..+.|  .+||++|-.+.+|+.+          ..++...++..+...++.|.+++.+.
T Consensus       209 ~vPk~~~viG~G~IGLE~gsV~~rLG--seVT~VEf~~~i~~~m----------D~Eisk~~qr~L~kQgikF~l~tkv~  276 (506)
T KOG1335|consen  209 EVPKKLTVIGAGYIGLEMGSVWSRLG--SEVTVVEFLDQIGGVM----------DGEISKAFQRVLQKQGIKFKLGTKVT  276 (506)
T ss_pred             hCcceEEEEcCceeeeehhhHHHhcC--CeEEEEEehhhhcccc----------CHHHHHHHHHHHHhcCceeEeccEEE
Confidence            45789999999999999999999998  9999999988876543          24677888889999999999998873


Q ss_pred             e---------EEeccc------ceeccCeEEEeccCCCCCC
Q 019876           97 S---------SVSLSE------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~~~------~~~~yd~lIlATGs~~p~~  122 (334)
                      .         .+.+.+      ...++|.+++|+|- +|+.
T Consensus       277 ~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR-rP~t  316 (506)
T KOG1335|consen  277 SATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR-RPFT  316 (506)
T ss_pred             EeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC-cccc
Confidence            1         222222      12479999999998 5765

>PLN02268 probable polyamine oxidase

Probab=97.84  E-value=2e-05  Score=76.54  Aligned_cols=40  Identities=28%  Similarity=0.300  Sum_probs=36.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      .+|+|||||.|||+||..|.+.+  .+|+|+|+++.+||.+.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g--~~v~vlEa~~r~GGri~   40 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDAS--FKVTLLESRDRIGGRVH   40 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCceee
Confidence            47999999999999999999986  89999999999999764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.83  E-value=8.1e-05  Score=73.30  Aligned_cols=80  Identities=23%  Similarity=0.186  Sum_probs=59.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|.+|+++|..|++.|  .+|+++|+.+.                 .....+.+.+++.|++++.+.... 
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~-----------------~~~~~~~~~l~~~gv~~~~~~~~~-   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDD-----------------ERHRALAAILEALGATVRLGPGPT-   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCch-----------------hhhHHHHHHHHHcCCEEEECCCcc-
Confidence            4579999999999999999999987  89999997642                 111233444566789988775432 


Q ss_pred             EEecccceeccCeEEEeccCCCCCCCC
Q 019876           98 SVSLSELRQLYHVVVLAYGAESDRALG  124 (334)
Q Consensus        98 ~v~~~~~~~~yd~lIlATGs~~p~~~~  124 (334)
                            ....+|.||+++|. .|..+-
T Consensus        75 ------~~~~~D~Vv~s~Gi-~~~~~~   94 (480)
T PRK01438         75 ------LPEDTDLVVTSPGW-RPDAPL   94 (480)
T ss_pred             ------ccCCCCEEEECCCc-CCCCHH
Confidence                  22468999999998 466553

>PLN02546 glutathione reductase

Probab=97.83  E-value=0.00014  Score=72.70  Aligned_cols=92  Identities=14%  Similarity=0.144  Sum_probs=67.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+|+++.+.+.        +.+  ..++...+.+.+++.||+++.+..+..
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g--~~Vtlv~~~~~il--------~~~--d~~~~~~l~~~L~~~GV~i~~~~~v~~  318 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLK--SDVHVFIRQKKVL--------RGF--DEEVRDFVAEQMSLRGIEFHTEESPQA  318 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeccccc--------ccc--CHHHHHHHHHHHHHCCcEEEeCCEEEE
Confidence            4579999999999999999999886  8999999876532        221  345666677778888999998865421


Q ss_pred             ---------EEeccccee-ccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLSELRQ-LYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~~~~~-~yd~lIlATGs~~p~~  122 (334)
                               .+...+.+. .+|.||+|+|. .|+.
T Consensus       319 i~~~~~g~v~v~~~~g~~~~~D~Viva~G~-~Pnt  352 (558)
T PLN02546        319 IIKSADGSLSLKTNKGTVEGFSHVMFATGR-KPNT  352 (558)
T ss_pred             EEEcCCCEEEEEECCeEEEecCEEEEeecc-ccCC
Confidence                     112223333 48999999998 4654

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.83  E-value=2.1e-05  Score=77.67  Aligned_cols=40  Identities=28%  Similarity=0.387  Sum_probs=37.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ++|+|||||++||+||..|++.|  ++|+|+|+++.+||...
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~   41 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAG   41 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccc
Confidence            58999999999999999999997  99999999999998764

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06996 hypothetical protein; Provisional

Probab=97.82  E-value=0.00014  Score=69.74  Aligned_cols=41  Identities=20%  Similarity=0.413  Sum_probs=34.1

Q ss_pred             cCCCCCCeEEEECCchHHHHHHHHHhhcCC--CCeEEEEcCCC
Q 019876           14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLP   54 (334)
Q Consensus        14 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~--~~~v~vie~~~   54 (334)
                      ++....++|+||||||+|+++|..|++.+-  +.+|+|+|+.+
T Consensus         6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            345566899999999999999999999851  36899999864

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.80  E-value=0.00016  Score=68.88  Aligned_cols=36  Identities=39%  Similarity=0.611  Sum_probs=30.9

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      +|+||||||||+++|..|.+..++.+|+|+|+.+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            689999999999999999555556999999987654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.78  E-value=0.00019  Score=68.00  Aligned_cols=92  Identities=20%  Similarity=0.203  Sum_probs=63.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhc----CCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKA----HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~----~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      ..++|+|||+|++|+.+|..|.+.    +...+|+|+. .+.+.        +.  ....+...+.+.+++.+|+++.+.
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l--------~~--~~~~~~~~~~~~l~~~gV~v~~~~  212 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL--------PG--FPAKVRRLVLRLLARRGIEVHEGA  212 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc--------cc--CCHHHHHHHHHHHHHCCCEEEeCC
Confidence            346999999999999999999753    2225899993 32211        11  123455667778888999999987


Q ss_pred             EEce----EEecccc-eeccCeEEEeccCCCCC
Q 019876           94 TLGS----SVSLSEL-RQLYHVVVLAYGAESDR  121 (334)
Q Consensus        94 ~v~~----~v~~~~~-~~~yd~lIlATGs~~p~  121 (334)
                      .+..    .+.+.++ .+++|.||+|+|.. |.
T Consensus       213 ~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~-p~  244 (364)
T TIGR03169       213 PVTRGPDGALILADGRTLPADAILWATGAR-AP  244 (364)
T ss_pred             eeEEEcCCeEEeCCCCEEecCEEEEccCCC-hh
Confidence            6531    3444433 46899999999984 54

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.76  E-value=2.4e-05  Score=77.36  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=35.7

Q ss_pred             EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      |||||||.+||+||.+|++.|  .+|+|+|+++.+||++.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~   38 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAG   38 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceE
Confidence            689999999999999999997  99999999999999864

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.76  E-value=0.00021  Score=71.39  Aligned_cols=38  Identities=29%  Similarity=0.331  Sum_probs=33.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      ...+|+|||+|.||+.||..+++.+  .+|+|+|+.+..+
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G--~~VilleK~~~~~   52 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAG--RRVLVVTKAALDD   52 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcC--CeEEEEEccCCCC
Confidence            3579999999999999999999987  9999999986543

>PRK10262 thioredoxin reductase; Provisional

Probab=97.76  E-value=0.00022  Score=66.30  Aligned_cols=90  Identities=22%  Similarity=0.224  Sum_probs=65.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|..|+.+|..|++.+  .+|+++++.+..         +.   ...+...+.+.+++.+|+++.+..+..
T Consensus       145 ~g~~vvVvGgG~~g~e~A~~l~~~~--~~Vtlv~~~~~~---------~~---~~~~~~~~~~~l~~~gV~i~~~~~v~~  210 (321)
T PRK10262        145 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGF---------RA---EKILIKRLMDKVENGNIILHTNRTLEE  210 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEECCcc---------CC---CHHHHHHHHhhccCCCeEEEeCCEEEE
Confidence            4679999999999999999999986  899999987542         11   123455667777888999988765421


Q ss_pred             ---------EEeccc-------ceeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLSE-------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~~-------~~~~yd~lIlATGs~~p~~  122 (334)
                               .+.+.+       ..+++|.||+|+|. .|..
T Consensus       211 v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~-~p~~  250 (321)
T PRK10262        211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH-SPNT  250 (321)
T ss_pred             EEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC-ccCh
Confidence                     122221       13689999999998 4654

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.75  E-value=3.8e-05  Score=73.91  Aligned_cols=37  Identities=24%  Similarity=0.391  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...++|+|||||+||+++|..|++.|  ++|+|+|+.+.
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   52 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPA   52 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCc
Confidence            44689999999999999999999997  99999998764

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.71  E-value=4.9e-05  Score=67.50  Aligned_cols=39  Identities=23%  Similarity=0.288  Sum_probs=34.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ..|+|||+|++|++||..|+..|  .+|+||||..-.||.+
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~GvGGRl   40 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRL   40 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCcccch
Confidence            36999999999999999999997  9999999987666654

>PRK06753 hypothetical protein; Provisional

Probab=97.71  E-value=4e-05  Score=72.69  Aligned_cols=34  Identities=15%  Similarity=0.433  Sum_probs=31.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++|+|||||++|+++|..|++.|  ++|+|+|+.+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence            58999999999999999999997  99999999865

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.70  E-value=0.00019  Score=68.27  Aligned_cols=38  Identities=26%  Similarity=0.303  Sum_probs=32.7

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      +|+|||||+||+++|..|.+..++.+|.|+|+.+..++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~   38 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG   38 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            68999999999999999998734599999999876554

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.70  E-value=5e-05  Score=72.12  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=36.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ++|+|||||++|+++|..|.+.+  .+|+|+|+++.+||.+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G--~~V~viEk~~~iGG~~~   41 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLN--KRVLVVEKRNHIGGNCY   41 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcee
Confidence            58999999999999999999876  89999999988888654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.69  E-value=4.3e-05  Score=74.59  Aligned_cols=38  Identities=26%  Similarity=0.282  Sum_probs=35.5

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      +|+|||||++|++||.+|.+.|  .+|+|+|+.+.+||.+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~   38 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKV   38 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCc
Confidence            5899999999999999999997  9999999999999865

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07045 putative monooxygenase; Reviewed

Probab=97.69  E-value=4.8e-05  Score=72.65  Aligned_cols=36  Identities=31%  Similarity=0.390  Sum_probs=32.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+||||||+|+++|..|++.|  ++|+|+|+.+.
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~   39 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAAR   39 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCc
Confidence            4579999999999999999999997  99999998764

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.68  E-value=5.7e-05  Score=71.93  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=37.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ...+|||||||.||++||..|...+ ..+++|+|..+++||.+
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI   61 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRI   61 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceE
Confidence            3459999999999999999999776 58999999999999865

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.67  E-value=0.00032  Score=70.02  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++|+|||||+||+.+|..+++.+  .+|+|+++..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G--~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMG--AKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCC--CCEEEEeccc
Confidence            47999999999999999999987  9999999864

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.67  E-value=0.00028  Score=70.61  Aligned_cols=34  Identities=26%  Similarity=0.257  Sum_probs=30.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||+|.||++||..+ +.+  .+|+|+|+.+.
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G--~~VilleK~~~   40 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERG--KNVVIVSKGLF   40 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcC--CCEEEEEccCC
Confidence            46999999999999999999 776  99999999754

>PLN02568 polyamine oxidase

Probab=97.65  E-value=7.5e-05  Score=74.38  Aligned_cols=44  Identities=18%  Similarity=0.323  Sum_probs=38.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcC---CCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~---~~~~v~vie~~~~~gg~~~   61 (334)
                      ..++|+|||||++|++||.+|.+.+   ++.+|+|+|+++.+||.+.
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~   50 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN   50 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence            3468999999999999999999865   2489999999999998764

>TIGR00551 nadB L-aspartate oxidase

Probab=97.64  E-value=0.00037  Score=68.78  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=30.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      .+|+|||+|.||+.||..+.+.+  . |+|+|+.+..
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G--~-V~lleK~~~~   36 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQG--R-VIVLSKAPVT   36 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCC--C-EEEEEccCCC
Confidence            58999999999999999999886  5 9999998543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR02730 carot_isom carotene isomerase

Probab=97.62  E-value=6.8e-05  Score=74.10  Aligned_cols=41  Identities=29%  Similarity=0.360  Sum_probs=37.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      .+|+|||||.+|+++|..|++.|  .+|+|+|+++.+||+...
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~~   41 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAGY   41 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCceeE
Confidence            37999999999999999999997  999999999999987753

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.60  E-value=5.6e-05  Score=69.32  Aligned_cols=41  Identities=20%  Similarity=0.214  Sum_probs=36.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ..+++|+|||+|.+|++||..|.+.   .+|++||.+..+||-.
T Consensus         6 ~~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha   46 (447)
T COG2907           6 HPRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHA   46 (447)
T ss_pred             CCCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCcc
Confidence            4678999999999999999999998   7999999998888743

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.58  E-value=8.9e-05  Score=70.74  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++.++|+|||||++|+++|..|++.|  ++|+|||+.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAG--ASVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCCC
Confidence            34579999999999999999999987  99999999754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.57  E-value=0.00019  Score=68.93  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=65.4

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc-------------------------
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV-------------------------  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~-------------------------  215 (334)
                      +|+|||||.+|+=+|..+++                    .|. +|.|++|.+.+                         
T Consensus         2 dviIIGgGaAGl~aA~~aa~--------------------~g~-~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~   60 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAE--------------------KGA-RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFL   60 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHH--------------------TT---EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEE
T ss_pred             cEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEeCCcccccceeecCCCCccccccccchhhHh
Confidence            58999999999999999986                    343 35555555322                         


Q ss_pred             -------------ccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceE
Q 019876          216 -------------QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE  282 (334)
Q Consensus       216 -------------~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  282 (334)
                                   +..|++.++.+.++..||.....+...-+.        .+...+.+.+.|.+.+.         +.|
T Consensus        61 ~~~~~~~~f~~~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP--------~s~~a~~Vv~~L~~~l~---------~~g  123 (409)
T PF03486_consen   61 SGYGRNPKFLKSALKRFSPEDLIAFFEELGVPTKIEEDGRVFP--------KSDKASSVVDALLEELK---------RLG  123 (409)
T ss_dssp             CS-TBTTTCTHHHHHHS-HHHHHHHHHHTT--EEE-STTEEEE--------TT--HHHHHHHHHHHHH---------HHT
T ss_pred             hhcccchHHHHHHHhcCCHHHHHHHHHhcCCeEEEcCCCEECC--------CCCcHHHHHHHHHHHHH---------HcC
Confidence                         123444677788888898887665442211        22233445566666554         679


Q ss_pred             EEEEeccccceeeccccCCCCeeEEEE-EEeeeec
Q 019876          283 LHFVFFRKPDSFLESNERSGHVSGVHF-EKTALKG  316 (334)
Q Consensus       283 v~~~~~~~~~~i~~~~~~~~~v~~v~~-~~~~~~~  316 (334)
                      |+|++++.+.+|.  . .++.+-.|++ ....+..
T Consensus       124 v~i~~~~~V~~i~--~-~~~~~f~v~~~~~~~~~a  155 (409)
T PF03486_consen  124 VEIHFNTRVKSIE--K-KEDGVFGVKTKNGGEYEA  155 (409)
T ss_dssp             -EEE-S--EEEEE--E-ETTEEEEEEETTTEEEEE
T ss_pred             CEEEeCCEeeeee--e-cCCceeEeeccCcccccC
Confidence            9999999999997  3 2566677888 4434443

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.57  E-value=0.0046  Score=59.35  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++++|||+|++|+.+|..+.+.+  .+|+|+++..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g--~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAG--KKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence            47999999999999999999886  8999999874

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.56  E-value=0.00012  Score=68.89  Aligned_cols=92  Identities=17%  Similarity=0.220  Sum_probs=67.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcC------------CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC   87 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~------------~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i   87 (334)
                      -++|||||||.|+.+|..|...-            ...+|+++|..+.+        .+.|  .+.+..+-.+++.+.+|
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------L~mF--dkrl~~yae~~f~~~~I  288 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------LNMF--DKRLVEYAENQFVRDGI  288 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------HHHH--HHHHHHHHHHHhhhccc
Confidence            57999999999999999986421            25899999987753        1322  45677888889999999


Q ss_pred             EEEeCeEEc----eEEec--ccc---eeccCeEEEeccCCCCCC
Q 019876           88 SFFGNVTLG----SSVSL--SEL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        88 ~~~~~~~v~----~~v~~--~~~---~~~yd~lIlATGs~~p~~  122 (334)
                      ++.+++.|.    .++..  .++   .++|-.||-|||. .|++
T Consensus       289 ~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~-~~rp  331 (491)
T KOG2495|consen  289 DLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGN-GPRP  331 (491)
T ss_pred             eeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCC-CCch
Confidence            999997663    22322  222   3589999999998 4654

>PRK07538 hypothetical protein; Provisional

Probab=97.56  E-value=8.8e-05  Score=71.53  Aligned_cols=34  Identities=21%  Similarity=0.368  Sum_probs=31.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      |+|+|||||++|+++|..|++.|  ++|+|||+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCc
Confidence            58999999999999999999997  99999999864

>PRK08013 oxidoreductase; Provisional

Probab=97.56  E-value=9.6e-05  Score=70.98  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|+||||||+|+++|..|++.|  ++|+|+|+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence            469999999999999999999987  99999998764

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.55  E-value=9.7e-05  Score=70.54  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|+||||||+|+++|..|++.|  ++|+|||+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence            368999999999999999999987  9999999764

>PLN02529 lysine-specific histone demethylase 1

Probab=97.54  E-value=0.00011  Score=75.28  Aligned_cols=41  Identities=29%  Similarity=0.352  Sum_probs=36.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ..++|+|||||++|++||..|.+.|  ++|+|+|+++.+||.+
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~  199 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFG--FKVVVLEGRNRPGGRV  199 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcC--CcEEEEecCccCcCce
Confidence            4679999999999999999999997  9999999988776643

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.54  E-value=9.1e-05  Score=70.33  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=30.8

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +|+|||||+||+++|..|++.|  ++|+|||+.+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G--~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSG--LKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCC--CEEEEEeCCCc
Confidence            5899999999999999999997  99999999864

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK05868 hypothetical protein; Validated

Probab=97.54  E-value=0.00011  Score=70.02  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +++|+|||||++|+++|..|++.|  ++|+|||+.+.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Confidence            468999999999999999999987  99999998865

>PRK09126 hypothetical protein; Provisional

Probab=97.53  E-value=9.8e-05  Score=70.52  Aligned_cols=35  Identities=34%  Similarity=0.542  Sum_probs=32.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+||||||+|+++|..|++.|  ++|+|+|+.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCc
Confidence            478999999999999999999997  99999999754

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.51  E-value=0.00011  Score=70.39  Aligned_cols=33  Identities=36%  Similarity=0.570  Sum_probs=31.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .++|+||||||+|+++|..|++.|  ++|+|||+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence            579999999999999999999998  999999997

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.51  E-value=0.00011  Score=70.29  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhc---CCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~---~~~~~v~vie~~   53 (334)
                      +.++|+||||||||+++|..|++.   |  .+|+|||+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence            457999999999999999999997   7  999999994

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.49  E-value=0.00012  Score=70.04  Aligned_cols=35  Identities=26%  Similarity=0.467  Sum_probs=32.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|+|||||++|+++|..|++.|  ++|+|||+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence            368999999999999999999997  99999999863

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.48  E-value=0.00018  Score=69.19  Aligned_cols=50  Identities=22%  Similarity=0.249  Sum_probs=38.8

Q ss_pred             ccccccccccCCCCCCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCC
Q 019876            5 RAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPT   55 (334)
Q Consensus         5 ~~~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~   55 (334)
                      +.|-.+..+++.....+|+|||||.+|+++|.+|.+. + ..+|+|+|+...
T Consensus        16 ~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g-~~~V~vle~~~~   66 (407)
T TIGR01373        16 RGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHG-ITNVAVLEKGWL   66 (407)
T ss_pred             CCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcC-CCeEEEEEcccc
Confidence            3454444555566778999999999999999999985 4 138999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.47  E-value=0.00014  Score=69.90  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=31.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+|+|||||++|+++|..|++.|  ++|+|+|+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence            68999999999999999999987  99999998764

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.47  E-value=0.00011  Score=68.78  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=37.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcC----CCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~----~~~~v~vie~~~~~gg~~~   61 (334)
                      ...+|+|||||||||+||..|++..    .+++|.|+|+...+||...
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl  122 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL  122 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence            3579999999999999999997653    5789999999988877543

>PLN02676 polyamine oxidase

Probab=97.46  E-value=0.00016  Score=71.23  Aligned_cols=43  Identities=23%  Similarity=0.285  Sum_probs=38.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCcccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~~   62 (334)
                      ...+|+|||||++|++||.+|.+.+  . +|+|+|+++.+||.+..
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g--~~~v~vlE~~~~~GG~~~~   68 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAG--IEDILILEATDRIGGRMRK   68 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEecCCCCCCCccee
Confidence            4679999999999999999999987  6 69999999999987643

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.45  E-value=0.00017  Score=69.63  Aligned_cols=36  Identities=31%  Similarity=0.450  Sum_probs=31.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ++|+|||||++|+++|..|++.+ .++|+|||+.+..
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g-~~~v~v~Er~~~~   36 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHS-HLNVQLFEAAPAF   36 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC-CCCEEEEecCCcC
Confidence            58999999999999999999985 3599999998653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.45  E-value=0.00014  Score=71.59  Aligned_cols=39  Identities=36%  Similarity=0.431  Sum_probs=35.8

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      +|+|||||.+|+++|..|.+.|  ++|+|+|+++.+||.+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~   39 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAG--HEVDIYESRSFIGGKVG   39 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCceee
Confidence            5899999999999999999987  99999999999988654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02487 zeta-carotene desaturase

Probab=97.45  E-value=0.00019  Score=71.76  Aligned_cols=41  Identities=37%  Similarity=0.487  Sum_probs=37.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      +++|+|||+|++|+++|..|.+.|  ++|+|+|+.+.+||.+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g--~~v~i~E~~~~~gG~~~  115 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRPFIGGKVG  115 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CeeEEEecCCCCCCcee
Confidence            469999999999999999999997  99999999999988653

>PRK07190 hypothetical protein; Provisional

Probab=97.42  E-value=0.00019  Score=70.73  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=32.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...+|+||||||+|+.+|..|++.|  .+|+|+|+.+.
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~G--i~V~llEr~~~   39 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCG--LNTVIVDKSDG   39 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcC--CCEEEEeCCCc
Confidence            4579999999999999999999987  99999999864

>PRK06126 hypothetical protein; Provisional

Probab=97.42  E-value=0.0002  Score=71.69  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ....+|+||||||+|+++|..|.+.|  ++|+|||+.+.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G--~~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRG--VDSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence            34579999999999999999999997  99999998753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.42  E-value=0.001  Score=66.20  Aligned_cols=86  Identities=10%  Similarity=0.128  Sum_probs=59.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhc-CCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~   96 (334)
                      ..++|+|||+|+.|+.+|..|++.+  .+|+++++.+.+.        .     .   ..+...++. .||+++.++.+.
T Consensus       351 ~~k~VvViGgG~~g~E~A~~L~~~g--~~Vtli~~~~~l~--------~-----~---~~l~~~l~~~~gV~i~~~~~v~  412 (515)
T TIGR03140       351 KGKDVAVIGGGNSGIEAAIDLAGIV--RHVTVLEFADELK--------A-----D---KVLQDKLKSLPNVDILTSAQTT  412 (515)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcC--cEEEEEEeCCcCC--------h-----h---HHHHHHHhcCCCCEEEECCeeE
Confidence            3579999999999999999999886  8999998765431        1     1   123344444 589998876542


Q ss_pred             e---------EEeccc------ceeccCeEEEeccCCCCCC
Q 019876           97 S---------SVSLSE------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~~~------~~~~yd~lIlATGs~~p~~  122 (334)
                      .         .+.+.+      ...++|.|++|+|. .|..
T Consensus       413 ~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~-~Pn~  452 (515)
T TIGR03140       413 EIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL-VPNT  452 (515)
T ss_pred             EEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC-cCCc
Confidence            1         132221      13589999999998 4654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.41  E-value=0.0002  Score=73.86  Aligned_cols=41  Identities=34%  Similarity=0.494  Sum_probs=37.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ..++|+|||||++|++||..|.+.+  .+|+|+|+++.+||.+
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~v~E~~~r~GGr~  277 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMG--FKVVVLEGRARPGGRV  277 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeccccCCCcc
Confidence            4688999999999999999999987  9999999998888764

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.41  E-value=0.00099  Score=61.07  Aligned_cols=38  Identities=26%  Similarity=0.453  Sum_probs=33.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      .+..+++|||||.-|+++|.+|++.+  .++.++|+.+.+
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g--~killLeqf~~p   42 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRG--DKILLLEQFPLP   42 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcC--CeEEEEeccCCC
Confidence            45678999999999999999999998  999999987543

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.40  E-value=0.0006  Score=66.36  Aligned_cols=145  Identities=31%  Similarity=0.440  Sum_probs=76.7

Q ss_pred             CCeEEEECCch-HHHHHHHHHhhcCC--CCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcC----CcEEEe
Q 019876           19 PLRVCVVGSGP-AGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE----RCSFFG   91 (334)
Q Consensus        19 ~~~vvIIGaG~-aGl~aA~~l~~~~~--~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~----~i~~~~   91 (334)
                      ..+.+++|.++ +++..|..+...+.  ...+-+.+.-|.+.++++++.      .++..+.+.+...-.    .+....
T Consensus         5 ~~~e~~~~~~~~~a~~~a~rCl~C~~~C~~~cp~~~~IP~~~~lv~~g~------~~~a~~~i~~tn~~p~~~gRvcp~~   78 (457)
T COG0493           5 DFREAVVGSGPEAAIYEAARCLDCGDPCITGCPVHNDIPEPIGLVREGV------DHEAIKLIHKTNNLPAITGRVCPLG   78 (457)
T ss_pred             cceeeecCCCHHHHHHHHHHHHcCCCccccCCcCCCcCCCHHHHHhcCC------cHHHHHHHHHhCCCccccCccCCCC
Confidence            57899999999 88888888888751  001111111122222222222      112222222111111    011111


Q ss_pred             CeEEceEEec-ccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHH
Q 019876           92 NVTLGSSVSL-SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNV  170 (334)
Q Consensus        92 ~~~v~~~v~~-~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~  170 (334)
                      +.-.+..+.. .+....++.|..+.|........+|+. .++                       -..+++|+|||+|+.
T Consensus        79 ~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~-~~~-----------------------~~tg~~VaviGaGPA  134 (457)
T COG0493          79 NLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGE-LPG-----------------------SRTGKKVAVIGAGPA  134 (457)
T ss_pred             CceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCC-CCC-----------------------CCCCCEEEEECCCch
Confidence            1112222222 344456777777777632222233332 111                       125699999999999


Q ss_pred             HHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       171 g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      |+.+|..|++                    .|. .||+.+|.+.
T Consensus       135 Gl~~a~~L~~--------------------~G~-~Vtv~e~~~~  157 (457)
T COG0493         135 GLAAADDLSR--------------------AGH-DVTVFERVAL  157 (457)
T ss_pred             HhhhHHHHHh--------------------CCC-eEEEeCCcCC
Confidence            9999999997                    665 6999988854

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.40  E-value=0.00018  Score=68.87  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=32.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+||||||+|+++|..|++.|  ++|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G--~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAG--IDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcC--CCEEEEEcCCc
Confidence            468999999999999999999997  99999999863

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.39  E-value=0.002  Score=60.51  Aligned_cols=111  Identities=12%  Similarity=0.080  Sum_probs=74.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc-------------------------
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP-------------------------  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~-------------------------  214 (334)
                      ..|+|||||..|+=+|..+++...                     +|+++++...                         
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~---------------------~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~l   62 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGR---------------------RVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFL   62 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCC---------------------EEEEEecCccccceeEecCCCCccccccccHHHHH
Confidence            579999999999999999997333                     3444443321                         


Q ss_pred             ------------cccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceE
Q 019876          215 ------------VQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE  282 (334)
Q Consensus       215 ------------~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  282 (334)
                                  .++.|+++.+.+..+..||..+..+.---+..++..        +.+++.|...+         ++.|
T Consensus        63 s~~p~~~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA--------~~Iv~~ll~~~---------~~~g  125 (408)
T COG2081          63 SRNPGNGHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKA--------SPIVDALLKEL---------EALG  125 (408)
T ss_pred             HhCCCcchHHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccch--------HHHHHHHHHHH---------HHcC
Confidence                        244788899999999999999987655433332221        12334444444         3679


Q ss_pred             EEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          283 LHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       283 v~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                      |++++++.+.+|.  .  ++..-.+.+.++
T Consensus       126 V~i~~~~~v~~v~--~--~~~~f~l~t~~g  151 (408)
T COG2081         126 VTIRTRSRVSSVE--K--DDSGFRLDTSSG  151 (408)
T ss_pred             cEEEecceEEeEE--e--cCceEEEEcCCC
Confidence            9999999999998  4  333444555554

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.37  E-value=0.00025  Score=68.27  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++|+|||||.+|+++|.+|++.+  .+|+|+|+++.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence            59999999999999999999987  99999999864

>PRK06185 hypothetical protein; Provisional

Probab=97.36  E-value=0.00022  Score=68.55  Aligned_cols=35  Identities=26%  Similarity=0.559  Sum_probs=32.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||||++|+++|..|++.|  ++|+|+|+.+
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G--~~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAG--VDVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence            4579999999999999999999987  9999999874

>PLN02612 phytoene desaturase

Probab=97.36  E-value=0.00028  Score=70.86  Aligned_cols=41  Identities=29%  Similarity=0.376  Sum_probs=37.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      .+++|+|||||.+|++||.+|.+.+  .+++|+|+.+.+||..
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g--~~~~~~e~~~~~gG~~  132 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAG--HKPILLEARDVLGGKV  132 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCCCCCcc
Confidence            4679999999999999999999997  9999999998888865

>PLN02985 squalene monooxygenase

Probab=97.35  E-value=0.00027  Score=70.12  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=32.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ....+|+|||||++|+++|..|++.|  .+|+|+|+.+
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G--~~V~vlEr~~   76 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDG--RRVHVIERDL   76 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcC--CeEEEEECcC
Confidence            45689999999999999999999987  9999999874

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.34  E-value=0.00026  Score=67.89  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=31.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|+|||||++|+.+|..|++.|  ++|+|||+.+.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~G--l~V~LiE~rp~   36 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRG--VPVELYEMRPV   36 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCc
Confidence            368999999999999999999997  99999997543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.33  E-value=0.00025  Score=68.23  Aligned_cols=33  Identities=18%  Similarity=0.405  Sum_probs=30.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .++|+||||||+|+++|..|.+.|  ++|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence            468999999999999999999987  999999985

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.33  E-value=0.00054  Score=62.39  Aligned_cols=41  Identities=22%  Similarity=0.207  Sum_probs=36.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      +.+++|||||.+|+.+|..|.+.|  .+|.|+|+++++||.+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNaY   41 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNAY   41 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCccc
Confidence            368999999999999999888887  99999999999998763

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.33  E-value=0.00023  Score=68.59  Aligned_cols=36  Identities=33%  Similarity=0.459  Sum_probs=31.2

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      +|+|||+|.||+.||..+++.+  .+|+|+|+.+..||
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeeccccc
Confidence            6999999999999999999997  89999999987555

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.0016  Score=56.32  Aligned_cols=111  Identities=22%  Similarity=0.240  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc----------ccCCC-HHHHHH
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV----------QAACT-AKELRE  226 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~----------~~~~~-~~~~~~  226 (334)
                      ....|+|||+|++|+-+|.+|++                    .+. +|.+++|+-.+          .+... .++.++
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk--------------------~g~-kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~   87 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAK--------------------AGL-KVAIFERKLSFGGGIWGGGMLFNKIVVREEADE   87 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHh--------------------CCc-eEEEEEeecccCCcccccccccceeeecchHHH
Confidence            34679999999999999999997                    677 49999998422          11111 378888


Q ss_pred             HHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCC-Cee
Q 019876          227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG-HVS  305 (334)
Q Consensus       227 ~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~-~v~  305 (334)
                      +|+.-||+..-.++.+-  ..+..+.        ...++...+          +.|.++..+.++..+.  - .++ +|+
T Consensus        88 iL~e~gI~ye~~e~g~~--v~ds~e~--------~skl~~~a~----------~aGaki~n~~~veDvi--~-r~~~rVa  144 (262)
T COG1635          88 ILDEFGIRYEEEEDGYY--VADSAEF--------ASKLAARAL----------DAGAKIFNGVSVEDVI--V-RDDPRVA  144 (262)
T ss_pred             HHHHhCCcceecCCceE--EecHHHH--------HHHHHHHHH----------hcCceeeecceEEEEE--E-ecCCceE
Confidence            99888888876665432  1111111        112222222          5689999999999987  3 345 899


Q ss_pred             EEEEEEe
Q 019876          306 GVHFEKT  312 (334)
Q Consensus       306 ~v~~~~~  312 (334)
                      ||.+.++
T Consensus       145 GvVvNWt  151 (262)
T COG1635         145 GVVVNWT  151 (262)
T ss_pred             EEEEecc
Confidence            9999885

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.30  E-value=0.00027  Score=68.79  Aligned_cols=32  Identities=28%  Similarity=0.483  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHhh----cCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLK----AHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~----~~~~~~v~vie~~   53 (334)
                      ++|+||||||+|+++|..|++    .|  ++|+|||+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G--~~v~viE~~   36 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKD--LKVLLLDAV   36 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCC--CeEEEEeCC
Confidence            479999999999999999998    55  999999994

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.30  E-value=0.00032  Score=69.25  Aligned_cols=39  Identities=15%  Similarity=0.206  Sum_probs=34.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +...+|+|||||..|+++|.+|.+.+|+.+|+|+|+++.
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            345799999999999999999999877799999999864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.30  E-value=0.0015  Score=59.62  Aligned_cols=86  Identities=20%  Similarity=0.205  Sum_probs=58.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcC-CcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE-RCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~-~i~~~~~~~v~   96 (334)
                      ..++|+|||+|+.|+.+|..|++.+  .+|+++++.+...        +    ..    .+.+.+.+. +++++.++.+.
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l~~~~--~~V~~v~~~~~~~--------~----~~----~~~~~l~~~~gv~~~~~~~v~  201 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYLTRIA--KKVTLVHRRDKFR--------A----EK----ILLDRLRKNPNIEFLWNSTVK  201 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhhc--CEEEEEEeCcccC--------c----CH----HHHHHHHhCCCeEEEeccEEE
Confidence            4579999999999999999999886  8999999865321        1    11    122334444 89988776542


Q ss_pred             e--------EEecc-----c-ceeccCeEEEeccCCCCCC
Q 019876           97 S--------SVSLS-----E-LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~--------~v~~~-----~-~~~~yd~lIlATGs~~p~~  122 (334)
                      .        .+.+.     + ..+++|.+|+|+|. .|..
T Consensus       202 ~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~-~~~~  240 (300)
T TIGR01292       202 EIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGH-EPNT  240 (300)
T ss_pred             EEEccCcEEEEEEEecCCCceEEEEccEEEEeeCC-CCCh
Confidence            1        12221     1 23589999999997 4543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.29  E-value=0.00097  Score=65.12  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||+|..|+.+|..+.+.+  .+|+++.+.+.
T Consensus       271 ~gk~VvVIGgG~~a~d~A~~l~~~G--~~Vtlv~~~~~  306 (449)
T TIGR01316       271 AGKSVVVIGGGNTAVDSARTALRLG--AEVHCLYRRTR  306 (449)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEeecCc
Confidence            4579999999999999999999997  88999998753

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.28  E-value=0.00028  Score=71.52  Aligned_cols=36  Identities=25%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++.+|+|||||++|+++|..|++.|  ++|+|||+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~G--i~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKG--FDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEeccc
Confidence            35689999999999999999999997  9999999875

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.26  E-value=0.00042  Score=65.96  Aligned_cols=42  Identities=31%  Similarity=0.311  Sum_probs=38.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      .+..+|+|||+|.+||.+|..|.+.|  ++|+|+|.++..||.+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~   46 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRS   46 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCcee
Confidence            46689999999999999999999998  9999999999988865

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.26  E-value=0.00036  Score=69.20  Aligned_cols=38  Identities=26%  Similarity=0.450  Sum_probs=34.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..+|||||+|.||++||..+++.|  .+|+|+|+.+..||
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~GG   98 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVAGG   98 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
Confidence            568999999999999999999997  99999999877654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.26  E-value=0.00089  Score=62.78  Aligned_cols=86  Identities=20%  Similarity=0.260  Sum_probs=54.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV   99 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v   99 (334)
                      |+|.|||.|+.|+..|.-|++.|  ++|+.+|..+.--..++.|..|-+.  ..+.+.+.+......+.+-        .
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~g~~PI~E--pgLe~ll~~~~~~gRl~fT--------t   68 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNKGISPIYE--PGLEELLKENLASGRLRFT--------T   68 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhCCCCCCcC--ccHHHHHHhccccCcEEEE--------c
Confidence            68999999999999999999997  9999999876533344445545431  1122222222222112221        1


Q ss_pred             ecccceeccCeEEEeccC
Q 019876          100 SLSELRQLYHVVVLAYGA  117 (334)
Q Consensus       100 ~~~~~~~~yd~lIlATGs  117 (334)
                      ..+..-..+|.++||+|.
T Consensus        69 d~~~a~~~adv~fIavgT   86 (414)
T COG1004          69 DYEEAVKDADVVFIAVGT   86 (414)
T ss_pred             CHHHHHhcCCEEEEEcCC
Confidence            122223478999999998

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.25  E-value=0.00032  Score=66.70  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +|+||||||+|+++|..|.+.| +++|+|+|+.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G-~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLG-KIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCC-CceEEEEeCCCc
Confidence            5899999999999999999983 389999998754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.25  E-value=0.00042  Score=69.40  Aligned_cols=36  Identities=31%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...+|+||||||+|+++|..|.+.|  ++|+|||+.+.
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G--~~v~viE~~~~   57 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQG--VPVVLLDDDDT   57 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence            4579999999999999999999987  99999999864

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.22  E-value=0.00096  Score=64.87  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .++|+|||||+||+.||...++.|  .++.|+-.+
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG--~ktlLlT~~   36 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMG--AKTLLLTLN   36 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccC--CeEEEEEcC
Confidence            479999999999999999999997  888887655

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.22  E-value=0.00045  Score=65.50  Aligned_cols=36  Identities=25%  Similarity=0.272  Sum_probs=32.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||||.+|+++|.+|++.+  .+|+|+|+....
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~~~   38 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFMPP   38 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCC--CeEEEEecccCC
Confidence            468999999999999999999997  999999997543

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.21  E-value=0.00044  Score=65.68  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=31.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+|+|||||.+|+++|.+|.+.+  .+|+|+|+.+.
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCC
Confidence            47999999999999999999987  89999999754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.21  E-value=0.0005  Score=65.35  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=33.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      .+++|+|||||.+|+++|.+|.+.+  .+|+++|+....
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~~~   39 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGEAG   39 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCccC
Confidence            4689999999999999999999998  799999988654

>PRK12831 putative oxidoreductase; Provisional

Probab=97.19  E-value=0.0025  Score=62.48  Aligned_cols=36  Identities=31%  Similarity=0.399  Sum_probs=32.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...++|+|||+|..|+.+|..|.+.+  .+|+++.+.+
T Consensus       279 ~~gk~VvVIGgG~va~d~A~~l~r~G--a~Vtlv~r~~  314 (464)
T PRK12831        279 KVGKKVAVVGGGNVAMDAARTALRLG--AEVHIVYRRS  314 (464)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHcC--CEEEEEeecC
Confidence            35689999999999999999999997  8899998764

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.19  E-value=0.0013  Score=62.09  Aligned_cols=87  Identities=26%  Similarity=0.193  Sum_probs=56.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .++++|||+|+.|+.+|..|.+.+  .+ |+|+++.+..       ..+.   ..    ...+.++..+|+++++..+..
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g--~~~Vtvi~~~~~~-------~~~~---~~----~~~~~l~~~gi~i~~~~~v~~  235 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLG--AEKVYLAYRRTIN-------EAPA---GK----YEIERLIARGVEFLELVTPVR  235 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeecchh-------hCCC---CH----HHHHHHHHcCCEEeeccCcee
Confidence            579999999999999999998876  65 9999876421       0011   11    122345667888877653210


Q ss_pred             --------EEec---------------------ccceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSL---------------------SELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~---------------------~~~~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+                     +...+++|.||+|+|.. |..
T Consensus       236 i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~-p~~  288 (352)
T PRK12770        236 IIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI-PTP  288 (352)
T ss_pred             eecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC-CCc
Confidence                    1111                     11246899999999984 543

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.18  E-value=6.4e-05  Score=64.35  Aligned_cols=40  Identities=33%  Similarity=0.444  Sum_probs=36.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..+|+|||+|.+|++||+++.++.|+.+|.|||..-.+||
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG  115 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG  115 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence            4699999999999999999999889999999999877654

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.17  E-value=0.00053  Score=67.21  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=32.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|||||+|+||++||..+++.+  .+|+|+|+.+.
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~G--~~V~vlEk~~~   38 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREAG--ASVLLLEAAPR   38 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence            469999999999999999999997  99999999863

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.16  E-value=0.00049  Score=66.22  Aligned_cols=34  Identities=41%  Similarity=0.559  Sum_probs=31.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      |+|+|||||.+|+++|.+|++.+  .+|+|+|+...
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence            58999999999999999999987  89999999753

>PLN03000 amine oxidase

Probab=97.16  E-value=0.00057  Score=70.86  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=37.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      +..+|+|||||++|+.||..|.+.+  .+|+|+|+++.+||.+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G--~~V~VlE~~~riGGRi  223 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFG--FKVTVLEGRKRPGGRV  223 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCC--CcEEEEEccCcCCCCc
Confidence            4689999999999999999999987  8999999998887754

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.15  E-value=0.00062  Score=67.57  Aligned_cols=37  Identities=16%  Similarity=0.147  Sum_probs=33.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..++|+|||||..|+++|..|++.|  ++|+|+|+++..
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rG--l~V~LvEk~d~~   41 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRG--LSVLLCEQDDLA   41 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence            3579999999999999999999997  999999998653

>PRK07121 hypothetical protein; Validated

Probab=97.15  E-value=0.00058  Score=67.48  Aligned_cols=39  Identities=33%  Similarity=0.387  Sum_probs=34.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ...+|||||+|.||++||..+++.+  .+|+|+|+.+..||
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~gG   57 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGAGG   57 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCC
Confidence            3579999999999999999999997  99999999876544

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.13  E-value=0.00053  Score=69.82  Aligned_cols=36  Identities=31%  Similarity=0.522  Sum_probs=32.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~   55 (334)
                      ...+|+||||||+|+.+|..|++. |  ++|+|||+.+.
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~G--i~v~IiE~~~~   67 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPD--ITTRIVERKPG   67 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCC--CcEEEEEcCCC
Confidence            467999999999999999999995 6  99999998753

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.13  E-value=0.00055  Score=67.43  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=32.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+|+|||||.+|+++|..|++..|+.+|+|+|+++.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~   36 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA   36 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            479999999999999999999866799999999753

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12839 hypothetical protein; Provisional

Probab=97.13  E-value=0.0007  Score=68.09  Aligned_cols=43  Identities=28%  Similarity=0.334  Sum_probs=37.0

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL   59 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~   59 (334)
                      ......+|+|||+|.+|++||..+.+.+  .+|+|+|+.+.+||.
T Consensus         4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~   46 (572)
T PRK12839          4 SMTHTYDVVVVGSGAGGLSAAVAAAYGG--AKVLVVEKASTCGGA   46 (572)
T ss_pred             CcCCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcc
Confidence            3445689999999999999999999987  999999998776654

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.11  E-value=0.00067  Score=65.12  Aligned_cols=40  Identities=18%  Similarity=0.211  Sum_probs=36.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      .+++|+|||||..|+++|..|.+..|+++|+|+|+.+.++
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a   41 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA   41 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence            4579999999999999999999999899999999987653

>PTZ00367 squalene epoxidase; Provisional

Probab=97.11  E-value=0.00066  Score=68.03  Aligned_cols=35  Identities=26%  Similarity=0.212  Sum_probs=32.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||||++|+++|..|++.|  .+|+|+|+.+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G--~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQG--RKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcC--CEEEEEcccc
Confidence            4679999999999999999999987  9999999875

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.11  E-value=0.00071  Score=67.06  Aligned_cols=37  Identities=16%  Similarity=0.176  Sum_probs=33.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ...+|+|||||..|+++|..|.++|  ++|+|+|+.+..
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rG--~~V~LlEk~d~~   41 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGRG--LKVLLCEKDDLA   41 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCC
Confidence            4579999999999999999999997  999999998654

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.11  E-value=0.00074  Score=66.59  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=34.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .....+|+|||||..|+++|.+|++.++..+|+|+|+.+.
T Consensus        42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~   81 (497)
T PTZ00383         42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD   81 (497)
T ss_pred             cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence            3456899999999999999999999865679999999853

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.11  E-value=0.0018  Score=59.04  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=32.9

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL   59 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~   59 (334)
                      .+||||+|.||++|+..+...+  -.|+++|+....||.
T Consensus        11 pvvVIGgGLAGLsasn~iin~g--g~V~llek~~s~GGN   47 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKG--GIVILLEKAGSIGGN   47 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcC--CeEEEEeccCCcCCc
Confidence            6999999999999999999987  569999998777663

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.11  E-value=0.00067  Score=64.13  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=31.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+|+|||||.+|+++|.+|++.+  .+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G--~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRG--LSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence            37999999999999999999987  89999999754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.08  E-value=0.00063  Score=65.49  Aligned_cols=34  Identities=29%  Similarity=0.289  Sum_probs=31.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+|+|||||++|+.||..|++.|  .+|+|||+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G--~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAG--VPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--CcEEEEecccc
Confidence            37999999999999999999997  99999997655

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02976 amine oxidase

Probab=97.07  E-value=0.00076  Score=72.72  Aligned_cols=44  Identities=27%  Similarity=0.385  Sum_probs=39.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ....++|+|||||++|+++|..|.+.+  .+|+|||+.+.+||.+.
T Consensus       690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G--~~V~VlEa~~~vGGri~  733 (1713)
T PLN02976        690 SVDRKKIIVVGAGPAGLTAARHLQRQG--FSVTVLEARSRIGGRVY  733 (1713)
T ss_pred             cCCCCcEEEECchHHHHHHHHHHHHCC--CcEEEEeeccCCCCcee
Confidence            345689999999999999999999987  89999999988888754

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.04  E-value=0.00076  Score=67.01  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..+|||||+| +|++||..+++.+  .+|+|+|+.+..||
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg   43 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGG   43 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence            5699999999 9999999999987  99999999876443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.04  E-value=0.003  Score=61.63  Aligned_cols=75  Identities=20%  Similarity=0.147  Sum_probs=52.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      +.++++|+|+|.+|+.+|..|++.|  ++|+++|+...                ..+ ....+.+...+++++.+.... 
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~----------------~~~-~~~~~~l~~~~~~~~~~~~~~-   63 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEE----------------DQL-KEALEELGELGIELVLGEYPE-   63 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCch----------------HHH-HHHHHHHHhcCCEEEeCCcch-
Confidence            4579999999999999999999998  99999988641                011 111222345577765544332 


Q ss_pred             EEecccceeccCeEEEeccC
Q 019876           98 SVSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        98 ~v~~~~~~~~yd~lIlATGs  117 (334)
                           .....+|.||+++|.
T Consensus        64 -----~~~~~~d~vv~~~g~   78 (450)
T PRK14106         64 -----EFLEGVDLVVVSPGV   78 (450)
T ss_pred             -----hHhhcCCEEEECCCC
Confidence                 122368999999997

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.03  E-value=0.00081  Score=67.91  Aligned_cols=36  Identities=33%  Similarity=0.487  Sum_probs=32.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      +.+|+|||+|.||++||..+++.+  .+|+|+|+.+..
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lieK~~~~   38 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAG--VHVDLFSLVPVK   38 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence            458999999999999999999987  999999987653

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.02  E-value=0.00097  Score=65.19  Aligned_cols=36  Identities=31%  Similarity=0.535  Sum_probs=29.0

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCC-CeEEEEcCCCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIIDRLPTP   56 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~-~~v~vie~~~~~   56 (334)
                      ||+|||||+||..+|..|++.++. .+|+|||+...+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence            699999999999999999999865 899999987543

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.02  E-value=0.0036  Score=62.29  Aligned_cols=86  Identities=15%  Similarity=0.204  Sum_probs=59.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhh-cCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ-HERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~~~~~v~   96 (334)
                      ..++|+|||+|+.|+.+|..|...+  .+|+|+++.+.+.        +.    .    .+...+. ..||+++.++.+.
T Consensus       350 ~gk~VvVVGgG~~g~e~A~~L~~~~--~~Vtlv~~~~~l~--------~~----~----~l~~~l~~~~gI~i~~~~~v~  411 (517)
T PRK15317        350 KGKRVAVIGGGNSGVEAAIDLAGIV--KHVTVLEFAPELK--------AD----Q----VLQDKLRSLPNVTIITNAQTT  411 (517)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEECcccc--------cc----H----HHHHHHhcCCCcEEEECcEEE
Confidence            4579999999999999999999886  8999998775431        11    1    1223333 3589998886542


Q ss_pred             e---------EEeccc------ceeccCeEEEeccCCCCCC
Q 019876           97 S---------SVSLSE------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~~~------~~~~yd~lIlATGs~~p~~  122 (334)
                      .         .+.+.+      ..+.+|.+++|+|. .|..
T Consensus       412 ~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~-~p~~  451 (517)
T PRK15317        412 EVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL-VPNT  451 (517)
T ss_pred             EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC-ccCc
Confidence            1         122221      13579999999998 4654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.02  E-value=0.00078  Score=65.49  Aligned_cols=37  Identities=41%  Similarity=0.518  Sum_probs=32.0

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      +|||||+|.||++||..+++.+ ..+|+|+|+.+..||
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G-~~~V~vlEk~~~~gg   37 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAG-AANVVLLEKMPVIGG   37 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CccEEEEecCCCCCC
Confidence            6999999999999999999974 279999999876544

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.01  E-value=0.0018  Score=59.65  Aligned_cols=99  Identities=14%  Similarity=0.139  Sum_probs=71.2

Q ss_pred             cccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEe
Q 019876           12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFG   91 (334)
Q Consensus        12 ~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~   91 (334)
                      |....+.+++++|||||+.++..|--++..+  .++.++=|.+.+        .-+|  .+.+.....+.++..||+++.
T Consensus       182 ff~Lee~Pkr~vvvGaGYIavE~Agi~~gLg--sethlfiR~~kv--------LR~F--D~~i~~~v~~~~~~~ginvh~  249 (478)
T KOG0405|consen  182 FFDLEEQPKRVVVVGAGYIAVEFAGIFAGLG--SETHLFIRQEKV--------LRGF--DEMISDLVTEHLEGRGINVHK  249 (478)
T ss_pred             ccchhhcCceEEEEccceEEEEhhhHHhhcC--CeeEEEEecchh--------hcch--hHHHHHHHHHHhhhcceeecc
Confidence            4455567899999999999999999999997  888888776542        1222  345666677788889999998


Q ss_pred             CeEEceEEecc---------ccee-ccCeEEEeccCCCCCCC
Q 019876           92 NVTLGSSVSLS---------ELRQ-LYHVVVLAYGAESDRAL  123 (334)
Q Consensus        92 ~~~v~~~v~~~---------~~~~-~yd~lIlATGs~~p~~~  123 (334)
                      ++.+...+...         .+.+ .+|.|+.|+|- .|...
T Consensus       250 ~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR-~Pntk  290 (478)
T KOG0405|consen  250 NSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR-KPNTK  290 (478)
T ss_pred             cccceeeeecCCCceEEEEeccccccccEEEEEecC-CCCcc
Confidence            87764322221         2233 58999999997 46553

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.99  E-value=0.00098  Score=67.36  Aligned_cols=36  Identities=19%  Similarity=0.394  Sum_probs=32.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...+|+|||+|.||+.||..+++.+  .+|+|+|+...
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~vleK~~~   46 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAG--LSVAVLSKVFP   46 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence            4579999999999999999999986  89999999753

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.98  E-value=0.0045  Score=60.58  Aligned_cols=87  Identities=20%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ..++|+|||+|..|+.+|..|.+.+  . +|+++++.+..      .. |..   ..    ..+.+.+.||+++.++.+.
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G--~~~Vtlv~~~~~~------~~-~~~---~~----~~~~~~~~GV~i~~~~~v~  335 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLG--AESVTIVYRRGRE------EM-PAS---EE----EVEHAKEEGVEFEWLAAPV  335 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecCcc------cC-CCC---HH----HHHHHHHCCCEEEecCCcE
Confidence            4689999999999999999999886  5 89999876431      01 221   11    1234456789988765431


Q ss_pred             e---------EEecc-------------------c-ceeccCeEEEeccCCCCC
Q 019876           97 S---------SVSLS-------------------E-LRQLYHVVVLAYGAESDR  121 (334)
Q Consensus        97 ~---------~v~~~-------------------~-~~~~yd~lIlATGs~~p~  121 (334)
                      .         .+.+.                   + ..+++|.||+|+|. .|.
T Consensus       336 ~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~-~p~  388 (457)
T PRK11749        336 EILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ-TPN  388 (457)
T ss_pred             EEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC-CCC
Confidence            1         02211                   1 13589999999998 455

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.98  E-value=0.0068  Score=58.48  Aligned_cols=32  Identities=28%  Similarity=0.432  Sum_probs=29.3

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +|+|||+|.|||++|..|...   .+|+|+.|.+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC---CcEEEEeCCCC
Confidence            799999999999999999886   79999998754

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=96.97  E-value=0.0011  Score=66.31  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|+|||||..|+++|..|++.|  ++|+|+|+.+.
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG--~~V~LlEk~d~   40 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRG--LRCILVERHDI   40 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCC
Confidence            579999999999999999999997  99999999754

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.97  E-value=0.0024  Score=60.03  Aligned_cols=40  Identities=35%  Similarity=0.353  Sum_probs=30.9

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ....++|+|||||-++...+..|.+.++..+|+++-+.+.
T Consensus       187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~  226 (341)
T PF13434_consen  187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG  226 (341)
T ss_dssp             ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred             ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence            3467899999999999999999999986679999998754

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.96  E-value=0.0012  Score=66.36  Aligned_cols=39  Identities=28%  Similarity=0.392  Sum_probs=34.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ...+|+|||+|++|++||..+++.+  .+|+|+|+.+.+||
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G--~~v~llEk~~~~gG   44 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRG--LSTVVVEKAPHYGG   44 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCc
Confidence            3579999999999999999999987  99999999876554

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.95  E-value=0.00099  Score=67.11  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      ..+|+|||+|.||+.||..+++.+++.+|+|+||....+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~   41 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR   41 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence            358999999999999999999876668999999986543

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.95  E-value=0.001  Score=67.07  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=33.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||+|.||+.||..+++.+++.+|+|+||.+..
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            35899999999999999999987666899999998653

>PRK08275 putative oxidoreductase; Provisional

Probab=96.95  E-value=0.0011  Score=66.64  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||+|.||+.||..+++.+++.+|+|+|+.+.
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            4689999999999999999998755689999999865

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=96.94  E-value=0.001  Score=66.62  Aligned_cols=38  Identities=32%  Similarity=0.354  Sum_probs=34.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC--CCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--TPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~--~~gg   58 (334)
                      ..+|+|||+|.||++||..+++.+  .+|+|+|+.+  ..||
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G--~~VivlEK~~~~~~GG   43 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAG--KRVLLLDQENEANLGG   43 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCCC
Confidence            468999999999999999999997  9999999988  5555

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.94  E-value=0.0012  Score=67.76  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=31.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|+|||||.+|+++|.+|++.|  .+|+|+|+..
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G--~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRG--WQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCC--CeEEEEecCC
Confidence            369999999999999999999997  8999999975

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=96.93  E-value=0.0069  Score=54.62  Aligned_cols=109  Identities=21%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC-----------CCHHHHHHHH
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-----------CTAKELREIL  228 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~-----------~~~~~~~~~l  228 (334)
                      -.|+|||+|..|+-+|..|++                    .|. +|.++++...+...           ...+...+.|
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~--------------------~G~-~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l   84 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAK--------------------AGL-KVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEIL   84 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHh--------------------CCC-eEEEEecCCCCCCccccCccccccccchHHHHHHH
Confidence            579999999999999999986                    566 59999988643211           1124455667


Q ss_pred             cCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEE
Q 019876          229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH  308 (334)
Q Consensus       229 ~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~  308 (334)
                      +..|+.+......+-  ..+.         .++.+.|.+.+.         +.|+++++++.+..+.  -++++++.+|.
T Consensus        85 ~~~gv~~~~~~~g~~--~vd~---------~~l~~~L~~~A~---------~~Gv~I~~~t~V~dl~--~~~~g~V~Gvv  142 (257)
T PRK04176         85 DEFGIRYKEVEDGLY--VADS---------VEAAAKLAAAAI---------DAGAKIFNGVSVEDVI--LREDPRVAGVV  142 (257)
T ss_pred             HHCCCCceeecCcce--eccH---------HHHHHHHHHHHH---------HcCCEEEcCceeceee--EeCCCcEEEEE
Confidence            777776654322110  0010         112233333332         5699999999999987  21234899988


Q ss_pred             EEE
Q 019876          309 FEK  311 (334)
Q Consensus       309 ~~~  311 (334)
                      +.+
T Consensus       143 ~~~  145 (257)
T PRK04176        143 INW  145 (257)
T ss_pred             Ecc
Confidence            754

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.92  E-value=0.0012  Score=62.11  Aligned_cols=36  Identities=25%  Similarity=0.377  Sum_probs=32.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||||.+|+++|..|.++|  ++++|+|+...+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G--~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKG--IDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcC--CeEEEEeecccc
Confidence            468999999999999999999998  999999987554

>TIGR00292 thiazole biosynthesis enzyme

Probab=96.92  E-value=0.0056  Score=55.08  Aligned_cols=108  Identities=20%  Similarity=0.243  Sum_probs=68.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC-------C----CHHHHHHHH
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-------C----TAKELREIL  228 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~-------~----~~~~~~~~l  228 (334)
                      -.|+|||+|..|+-+|..|++                    .|. +|.+++|...+...       |    ......+.+
T Consensus        22 ~DVvIVGgGpAGL~aA~~la~--------------------~G~-~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l   80 (254)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAK--------------------NGL-KVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEIL   80 (254)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCCCCCccccCCCcceecccccchHHHHH
Confidence            469999999999999999996                    565 69999998654211       1    113345566


Q ss_pred             cCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCC--CeeE
Q 019876          229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG--HVSG  306 (334)
Q Consensus       229 ~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~--~v~~  306 (334)
                      +..|+.+......+-  ..+.         ..+.+.|.+.+.         +.|+++++++.+.++.  - .++  ++.+
T Consensus        81 ~~~gi~~~~~~~g~~--~~~~---------~el~~~L~~~a~---------e~GV~I~~~t~V~dli--~-~~~~~~V~G  137 (254)
T TIGR00292        81 DEFGIRYEDEGDGYV--VADS---------AEFISTLASKAL---------QAGAKIFNGTSVEDLI--T-RDDTVGVAG  137 (254)
T ss_pred             HHCCCCeeeccCceE--EeeH---------HHHHHHHHHHHH---------HcCCEEECCcEEEEEE--E-eCCCCceEE
Confidence            666766543322110  0010         112233333332         5689999999999987  3 234  6999


Q ss_pred             EEEEE
Q 019876          307 VHFEK  311 (334)
Q Consensus       307 v~~~~  311 (334)
                      |.+..
T Consensus       138 Vv~~~  142 (254)
T TIGR00292       138 VVINW  142 (254)
T ss_pred             EEeCC
Confidence            98854

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.88  E-value=0.0012  Score=66.54  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=30.9

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      +|+|||+|.||++||..+++.+  .+|+|+|+.+..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G--~~V~lleK~~~~   34 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAG--LNTAVISKVYPT   34 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence            5999999999999999999987  999999997643

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.87  E-value=0.0014  Score=65.85  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=34.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL   59 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~   59 (334)
                      ..+|+|||+|.+|++||..+++.+  .+|+|+|+.+..||.
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G--~~v~liEk~~~~gG~   44 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSG--LEPLIVEKQDKVGGS   44 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCce
Confidence            568999999999999999999997  999999998766553

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=96.86  E-value=0.0015  Score=63.52  Aligned_cols=42  Identities=21%  Similarity=0.105  Sum_probs=38.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ...+|+|||+|.+|+.+|..|.+.|  .+|.++|+++..||.+.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccc
Confidence            3579999999999999999999998  99999999999998764

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.85  E-value=0.0014  Score=66.12  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=34.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..+|||||+|.||++||..+++.+  .+|+|+|+.+..||
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G--~~VivlEk~~~~gG   48 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARG--LDTLVVEKSAHFGG   48 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCC--CcEEEEEcCCCCCc
Confidence            469999999999999999999987  99999999876554

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.85  E-value=0.0014  Score=66.75  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||+|.||+.||..+++.+  .+|+|+|+.+..
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G--~~V~lieK~~~~   43 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERG--LRVAVVCKSLFG   43 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCC--CCEEEEeccCCC
Confidence            468999999999999999999987  999999998654

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.85  E-value=0.0016  Score=65.41  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=35.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ....+|||||+| +|++||..+++.+  .+|+|+|+.+..||..
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G--~~v~v~Ek~~~~GG~~   54 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELG--LSVLIVEKSSYVGGST   54 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCC--CcEEEEecCCCCcCcc
Confidence            346899999999 8999999999987  9999999988777643

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=96.84  E-value=0.0017  Score=63.97  Aligned_cols=38  Identities=16%  Similarity=0.260  Sum_probs=33.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...+|||||||.+|+++|..|++..|+.+|+|+|+.+.
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~   42 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDS   42 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence            45699999999999999999999977899999999434

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=96.84  E-value=0.0016  Score=66.25  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=33.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..++|+|||||..|.++|..|.+.|  ++|+|+|+.+..
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rG--l~V~LvE~~d~a  106 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRG--LRVGLVEREDFS  106 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccC
Confidence            4589999999999999999999997  999999998643

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.82  E-value=0.0064  Score=63.33  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~   54 (334)
                      ..++|+|||+|..|+.+|..+.+.+  .+ |+++++++
T Consensus       569 ~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtlv~r~~  604 (752)
T PRK12778        569 FGKKVAVVGGGNTAMDSARTAKRLG--AERVTIVYRRS  604 (752)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcC--CCeEEEeeecC
Confidence            4589999999999999999999997  66 99998764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.80  E-value=0.0017  Score=65.33  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=31.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||+|.||++||..+.+.+  .+|+|+||.+.
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G--~~V~lveK~~~   39 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAG--FKVAVISKVFP   39 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCC--CcEEEEEccCC
Confidence            469999999999999999999986  99999999854

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.78  E-value=0.0083  Score=58.99  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=30.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..++|+|||+|+.|+.+|..+.+.+ ..+|++++..+.+
T Consensus       280 ~gk~VvVIGgG~~g~e~A~~~~~~g-a~~Vt~~~~~~~~  317 (471)
T PRK12810        280 KGKHVVVIGGGDTGMDCVGTAIRQG-AKSVTQRDIMPMP  317 (471)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEccccCCC
Confidence            4689999999999999999988886 2378888766543

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.76  E-value=0.012  Score=54.01  Aligned_cols=35  Identities=34%  Similarity=0.399  Sum_probs=31.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+++|||+|.||+.||..|+..+  .+|.|+|++..
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG--~~V~ildQEge   39 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAG--KRVLILDQEGE   39 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcC--ceEEEEccccc
Confidence            468999999999999999999997  99999998753

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.75  E-value=0.0017  Score=65.90  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=32.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      ..+|+|||+|.||+.||..+++.|  .+|+|+||.+..+
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~lveK~~~~~   65 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELG--YKTACISKLFPTR   65 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcC--CcEEEEeccCCCC
Confidence            468999999999999999999986  9999999986543

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.73  E-value=0.0021  Score=65.52  Aligned_cols=36  Identities=28%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||+|.||++||..+++.+  .+|+|+++...+
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G--~~VilieK~~~~   70 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELG--YNVKVFCYQDSP   70 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcC--CcEEEEecCCCC
Confidence            469999999999999999999987  999999986443

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.72  E-value=0.0016  Score=59.68  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +++||||+|++|..+|..|.+.+ +.+|.|+|+.+.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~-~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAG-NKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTST-TS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCC-CCcEEEEEcccc
Confidence            48999999999999999999874 579999999864

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR02462 pyranose_ox pyranose oxidase

Probab=96.71  E-value=0.0021  Score=63.91  Aligned_cols=39  Identities=26%  Similarity=0.280  Sum_probs=35.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ++|+|||+||+|+.+|.+|.+.+  ++|.|||+....|+.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g--~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAG--LKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCC--CeEEEEeccCccCCCc
Confidence            48999999999999999999997  9999999998776544

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.70  E-value=0.0019  Score=65.32  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=32.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...+|+|||+|.||++||..+++.+  .+|+|+||...
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G--~~V~lveK~~~   46 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAG--LKTACITKVFP   46 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCC
Confidence            3468999999999999999999986  89999999754

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.70  E-value=0.0019  Score=62.74  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=31.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..+|+|||+|.||++||..+. .+  .+|+|+||.+..+|
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G--~~V~lleK~~~~gg   40 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KD--LKILMVSKGKLNEC   40 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cC--CCEEEEecCCCCCC
Confidence            469999999999999999974 45  99999999866443

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.68  E-value=0.002  Score=65.51  Aligned_cols=36  Identities=25%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||+|.||+.||..+++.+  .+|+|+||....
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G--~~VilveK~~~~   85 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPT   85 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcC--CcEEEEEcCCCC
Confidence            368999999999999999999987  999999998653

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.67  E-value=0.002  Score=65.29  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||+|.||+.||..+++.+++.+|+|+|+.+.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            4689999999999999999998723399999999764

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.66  E-value=0.0024  Score=64.42  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=32.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCC-CCeEEEEcCCCCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPF   57 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~-~~~v~vie~~~~~g   57 (334)
                      ..+|+|||+|.||++||..+++.++ +.+|+|+|+.+..+
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~   44 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR   44 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence            4589999999999999999999862 27999999986543

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.66  E-value=0.0022  Score=64.84  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=32.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||+|.||++||..+++.+  .+|+|+||....
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lleK~~~~   42 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSG--QSCALLSKVFPT   42 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence            468999999999999999999986  999999998543

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=96.65  E-value=0.0061  Score=52.91  Aligned_cols=110  Identities=22%  Similarity=0.228  Sum_probs=65.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC-------CCH----HHHHHHH
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-------CTA----KELREIL  228 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~-------~~~----~~~~~~l  228 (334)
                      -.|+|||+|.+|+-+|..|++                    .|. +|.+++++..+--.       |..    ++...+|
T Consensus        18 ~DV~IVGaGpaGl~aA~~La~--------------------~g~-kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL   76 (230)
T PF01946_consen   18 YDVAIVGAGPAGLTAAYYLAK--------------------AGL-KVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEIL   76 (230)
T ss_dssp             ESEEEE--SHHHHHHHHHHHH--------------------HTS--EEEEESSSS-BTTTTS-CTT---EEEETTTHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHH--------------------CCC-eEEEEecCCCCCccccccccccchhhhhhhHHHHH
Confidence            579999999999999999997                    576 59999988433221       111    4556677


Q ss_pred             cCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEE
Q 019876          229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH  308 (334)
Q Consensus       229 ~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~  308 (334)
                      +.-||++.-..+.+- . .+..+        -...++....          ..|+++.....+..+.- - ++++|.||.
T Consensus        77 ~elgi~y~~~~~g~~-v-~d~~~--------~~s~L~s~a~----------~aGakifn~~~vEDvi~-r-~~~rV~GvV  134 (230)
T PF01946_consen   77 DELGIPYEEYGDGYY-V-ADSVE--------FTSTLASKAI----------DAGAKIFNLTSVEDVIV-R-EDDRVAGVV  134 (230)
T ss_dssp             HHHT---EE-SSEEE-E-S-HHH--------HHHHHHHHHH----------TTTEEEEETEEEEEEEE-E-CSCEEEEEE
T ss_pred             HhCCceeEEeCCeEE-E-EcHHH--------HHHHHHHHHh----------cCCCEEEeeeeeeeeEE-E-cCCeEEEEE
Confidence            777887764443221 1 11111        1122333332          57999999999999862 2 237999999


Q ss_pred             EEEe
Q 019876          309 FEKT  312 (334)
Q Consensus       309 ~~~~  312 (334)
                      +.++
T Consensus       135 iNWt  138 (230)
T PF01946_consen  135 INWT  138 (230)
T ss_dssp             EEEH
T ss_pred             EEeh
Confidence            9985

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.65  E-value=0.0026  Score=64.15  Aligned_cols=40  Identities=28%  Similarity=0.287  Sum_probs=35.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL   59 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~   59 (334)
                      ...+|+|||+|.+|+.+|..+.+.+  .+|+|||+.+..||.
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~   50 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHG--LKVIVVEKDPVFGGT   50 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCcc
Confidence            4579999999999999999999987  999999998766553

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.65  E-value=0.0029  Score=55.84  Aligned_cols=74  Identities=20%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhh-cCCcEEEeCeEEceE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ-HERCSFFGNVTLGSS   98 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~~~~~v~~~   98 (334)
                      |+++|||+|..|...|..|.+.+  .+|+++|+++.                     ...+++. ......+.+.....+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~---------------------~~~~~~~~~~~~~~v~gd~t~~~   57 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEE---------------------RVEEFLADELDTHVVIGDATDED   57 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHH---------------------HHHHHhhhhcceEEEEecCCCHH
Confidence            68999999999999999999997  99999998742                     1112122 233444333222211


Q ss_pred             Eeccc-ceeccCeEEEeccC
Q 019876           99 VSLSE-LRQLYHVVVLAYGA  117 (334)
Q Consensus        99 v~~~~-~~~~yd~lIlATGs  117 (334)
                      + +.+ +-..+|.+|.+||.
T Consensus        58 ~-L~~agi~~aD~vva~t~~   76 (225)
T COG0569          58 V-LEEAGIDDADAVVAATGN   76 (225)
T ss_pred             H-HHhcCCCcCCEEEEeeCC
Confidence            1 222 23479999999998

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.62  E-value=0.0058  Score=53.15  Aligned_cols=34  Identities=35%  Similarity=0.370  Sum_probs=31.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||||.+|...+..|.+.+  .+|+|++++
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~   41 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEE   41 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCC
Confidence            3579999999999999999999987  999999875

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.61  E-value=0.0068  Score=59.32  Aligned_cols=77  Identities=19%  Similarity=0.188  Sum_probs=51.7

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEEe
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVS  100 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v~  100 (334)
                      +|+|||.|++|+++|..|.+.|  ++|+++|+++.+          .       .......++..|+.++.+...... .
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~----------~-------~~~~~~~l~~~gi~~~~g~~~~~~-~   61 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSP----------E-------LLERQQELEQEGITVKLGKPLELE-S   61 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCCch----------h-------hHHHHHHHHHcCCEEEECCccchh-h
Confidence            6999999999999999999997  999999987542          1       011122345568888765432210 0


Q ss_pred             cccceeccCeEEEeccC
Q 019876          101 LSELRQLYHVVVLAYGA  117 (334)
Q Consensus       101 ~~~~~~~yd~lIlATGs  117 (334)
                      .......+|.||++.|.
T Consensus        62 ~~~~~~~~d~vv~s~gi   78 (459)
T PRK02705         62 FQPWLDQPDLVVVSPGI   78 (459)
T ss_pred             hhHHhhcCCEEEECCCC
Confidence            00112368999998887

>PRK07395 L-aspartate oxidase; Provisional

Probab=96.58  E-value=0.0029  Score=63.43  Aligned_cols=38  Identities=34%  Similarity=0.459  Sum_probs=32.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ...+|+|||+|.||++||..+. .+  .+|+|+||.+..+|
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G--~~V~lieK~~~~gg   45 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SH--LRVGLITKDTLKTS   45 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cC--CCEEEEEccCCCCC
Confidence            3569999999999999999985 35  89999999876443

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.58  E-value=0.0027  Score=64.87  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||+|.||+.||..+++.|  ++|+|+++.+..
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G--~~VivleK~~~~   40 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRG--LDTIVLSLVPAK   40 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcC--CCEEEEeCCCCC
Confidence            468999999999999999999987  999999987653

>PRK08071 L-aspartate oxidase; Provisional

Probab=96.56  E-value=0.0028  Score=62.89  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..+|+|||+|.||+.||..+.+ +  .+|+|+|+.+..+|
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g--~~V~lveK~~~~~g   39 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-E--YNVIIITKKTKRNS   39 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-C--CCEEEEeccCCCCC
Confidence            4699999999999999999975 5  89999999875433

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.55  E-value=0.0025  Score=54.51  Aligned_cols=86  Identities=19%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV   99 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v   99 (334)
                      |+|.|||.|+.|+..|..|++.|  ++|+.+|.++..-..++.|..|-. . ..+...+.+.....+..+..        
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~g~~p~~-E-~~l~~ll~~~~~~~~l~~t~--------   68 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNNGELPIY-E-PGLDELLKENVSAGRLRATT--------   68 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHTTSSSS--C-TTHHHHHHHHHHTTSEEEES--------
T ss_pred             CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhhcccccc-c-cchhhhhccccccccchhhh--------
Confidence            69999999999999999999998  999999988654333444443332 1 12333344444333333211        


Q ss_pred             ecccceeccCeEEEeccC
Q 019876          100 SLSELRQLYHVVVLAYGA  117 (334)
Q Consensus       100 ~~~~~~~~yd~lIlATGs  117 (334)
                      .....-..+|.++||.+.
T Consensus        69 ~~~~ai~~adv~~I~VpT   86 (185)
T PF03721_consen   69 DIEEAIKDADVVFICVPT   86 (185)
T ss_dssp             EHHHHHHH-SEEEE----
T ss_pred             hhhhhhhccceEEEecCC
Confidence            111112379999999997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.51  E-value=0.018  Score=55.07  Aligned_cols=120  Identities=18%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec-CccccCCC----HHHHHHHHcCCce-
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR-GPVQAACT----AKELREILGIKNL-  233 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~-~~~~~~~~----~~~~~~~l~~~gv-  233 (334)
                      ..|+|||||.+|+-+|..|++                    .|. +|+|++++ ..+.....    .+.-.++|+.-|+ 
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~--------------------~G~-~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~   61 (387)
T COG0654           3 LDVAIVGAGPAGLALALALAR--------------------AGL-DVTLLERAPRELLERGRGIALSPNALRALERLGLW   61 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEccCccccccCceeeeecHhHHHHHHHcCCh
Confidence            579999999999999999997                    675 59999998 33322221    1233334444443 


Q ss_pred             E-------------EEEccC--ccCCCCCch--hhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeec
Q 019876          234 Y-------------VHIRED--DLIKSPTDE--EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE  296 (334)
Q Consensus       234 ~-------------~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~  296 (334)
                      .             ......  .........  ......-....+.+.|.+.+.        ...+|+++++++++.+. 
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--------~~~~v~~~~~~~v~~~~-  132 (387)
T COG0654          62 DRLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAAR--------ALPNVTLRFGAEVEAVE-  132 (387)
T ss_pred             hhhhhccCCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHh--------hCCCcEEEcCceEEEEE-
Confidence            1             111111  011111110  011111223444455666553        24559999999999998 


Q ss_pred             cccCCCCeeEEEEE-Ee
Q 019876          297 SNERSGHVSGVHFE-KT  312 (334)
Q Consensus       297 ~~~~~~~v~~v~~~-~~  312 (334)
                       . +++.++ +.+. ++
T Consensus       133 -~-~~~~v~-v~l~~dG  146 (387)
T COG0654         133 -Q-DGDGVT-VTLSFDG  146 (387)
T ss_pred             -E-cCCceE-EEEcCCC
Confidence             3 245676 7777 44

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.51  E-value=0.0037  Score=63.03  Aligned_cols=41  Identities=27%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ...+|+|||+|++|+.||..+.+.+  .+|+|+|+.+.+||..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~l~ek~~~~gg~~   55 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAG--LKVLLVERTEYVGGTT   55 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcc
Confidence            3579999999999999999999987  9999999987766644

>PRK07236 hypothetical protein; Provisional

Probab=96.51  E-value=0.016  Score=55.30  Aligned_cols=55  Identities=24%  Similarity=0.167  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCC-----HHHHHHHHcCCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT-----AKELREILGIKN  232 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~-----~~~~~~~l~~~g  232 (334)
                      ...+|+|||||.+|+.+|..|++                    .|. +|+|+++++.......     .+...+.|+..|
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg   63 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRR--------------------AGW-DVDVFERSPTELDGRGAGIVLQPELLRALAEAG   63 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcC
Confidence            34789999999999999999996                    676 5999999864332211     244455555544


Q ss_pred             e
Q 019876          233 L  233 (334)
Q Consensus       233 v  233 (334)
                      +
T Consensus        64 ~   64 (386)
T PRK07236         64 V   64 (386)
T ss_pred             C
Confidence            4

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.49  E-value=0.0036  Score=68.12  Aligned_cols=39  Identities=36%  Similarity=0.405  Sum_probs=35.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL   59 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~   59 (334)
                      ..+|||||+|.||++||..+++.|  .+|+|+|+.+..||.
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~G--a~VivlEK~~~~GG~  447 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCG--AQVILLEKEAKLGGN  447 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEccCCCCCc
Confidence            478999999999999999999987  999999998776653

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.47  E-value=0.0048  Score=58.73  Aligned_cols=54  Identities=17%  Similarity=0.249  Sum_probs=44.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCcchh
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHPETK   72 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~~~~   72 (334)
                      ++.++++|||+|..|+.||.+|.+.+  .+|+++|++...||... -.++|+++...
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g--~~V~vlerrhv~gGaavteeivpGfKfsr   66 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYG--QSVAVLERRHVIGGAAVTEEIVPGFKFSR   66 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcC--cceEEEEEeeecCcceeeehhccccccch
Confidence            56789999999999999999999997  99999999866655443 36778876543

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.46  E-value=0.0028  Score=64.22  Aligned_cols=31  Identities=32%  Similarity=0.366  Sum_probs=29.2

Q ss_pred             EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|||+|.||++||..+++.+  .+|+|+|+.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G--~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELG--YHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcC--CCEEEEEecC
Confidence            689999999999999999987  8999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.46  E-value=0.016  Score=58.22  Aligned_cols=87  Identities=20%  Similarity=0.151  Sum_probs=57.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+++++.+...        .    ...+.   ...+...+|+++.+..+..
T Consensus       142 ~g~~VvVIGgG~~g~E~A~~L~~~g--~~Vtli~~~~~~~--------~----~~~~~---~~~~~~~gV~i~~~~~V~~  204 (555)
T TIGR03143       142 TGMDVFVIGGGFAAAEEAVFLTRYA--SKVTVIVREPDFT--------C----AKLIA---EKVKNHPKIEVKFNTELKE  204 (555)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHccC--CEEEEEEeCCccc--------c----CHHHH---HHHHhCCCcEEEeCCEEEE
Confidence            4689999999999999999999886  8999999876420        1    11221   2233456899988876521


Q ss_pred             -----E---Ee---cccce-----eccCe----EEEeccCCCCCC
Q 019876           98 -----S---VS---LSELR-----QLYHV----VVLAYGAESDRA  122 (334)
Q Consensus        98 -----~---v~---~~~~~-----~~yd~----lIlATGs~~p~~  122 (334)
                           .   +.   ..+++     ..+|.    |++|+|. .|..
T Consensus       205 i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~-~Pn~  248 (555)
T TIGR03143       205 ATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY-APSS  248 (555)
T ss_pred             EEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCC-CCCh
Confidence                 0   11   11221     13565    9999998 4654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.40  E-value=0.0073  Score=58.03  Aligned_cols=38  Identities=21%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      ..++++|||||..|+.+|..|++                    .|.+ |++|++.+.+.
T Consensus       123 v~~svLVIGGGvAGitAAl~La~--------------------~G~~-v~LVEKepsiG  160 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELAD--------------------MGFK-VYLVEKEPSIG  160 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHH--------------------cCCe-EEEEecCCccc
Confidence            46899999999999999999997                    7885 99999987663

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=96.38  E-value=0.0032  Score=61.09  Aligned_cols=30  Identities=13%  Similarity=0.298  Sum_probs=0.0

Q ss_pred             CceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          279 GQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       279 ~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                      .+.||++++++.+.++.  - ++++|++|.+.+
T Consensus       101 ~e~gv~v~~~t~v~~v~--~-~~~~i~~V~~~~  130 (428)
T PF12831_consen  101 AEAGVEVLLGTRVVDVI--R-DGGRITGVIVET  130 (428)
T ss_dssp             ---------------------------------
T ss_pred             ccccccccccccccccc--c-cccccccccccc
Confidence            46899999999999998  4 357999999975

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.33  E-value=0.023  Score=60.45  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=31.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||||..|+-+|..+.+.+  .+|+++.+++
T Consensus       446 ~Gk~VvVIGGG~tA~D~A~ta~R~G--a~Vtlv~rr~  480 (944)
T PRK12779        446 KGKEVFVIGGGNTAMDAARTAKRLG--GNVTIVYRRT  480 (944)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEecC
Confidence            4589999999999999999999997  7999998764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.33  E-value=0.029  Score=55.10  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++++|||+|..|+.+|..+.+.+ ..+|+|+++.+.
T Consensus       281 ~gk~VvVIGgG~~a~d~A~~a~~~G-a~~Vtvv~r~~~  317 (467)
T TIGR01318       281 EGKRVVVLGGGDTAMDCVRTAIRLG-AASVTCAYRRDE  317 (467)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEEecCc
Confidence            3589999999999999999999886 137999987653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.32  E-value=0.0046  Score=62.62  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             eEEEECCchHHHHHHHHHh----hcCCCCeEEEEcCCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTL----KAHQEAQVDIIDRLPT   55 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~----~~~~~~~v~vie~~~~   55 (334)
                      +|+|||+|.||+.||..++    +.|  .+|+|++|...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G--~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKG--LKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCC--CeEEEEEccCC
Confidence            5999999999999999998    455  89999999754

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK09077 L-aspartate oxidase; Provisional

Probab=96.31  E-value=0.0057  Score=61.17  Aligned_cols=38  Identities=26%  Similarity=0.432  Sum_probs=32.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ...+|+|||+|.||+.||..+.+.   .+|+|+|+.+..+|
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~~~~g   44 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGPLSEG   44 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccCCCCC
Confidence            346999999999999999999874   79999999865433

>PRK07045 putative monooxygenase; Reviewed

Probab=96.28  E-value=0.031  Score=53.30  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=30.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -+|+|||||.+|+-+|..|++                    .|. +|+|+++++..
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~--------------------~G~-~v~v~E~~~~~   40 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGA--------------------RGH-SVTVVERAARN   40 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHh--------------------cCC-cEEEEeCCCcc
Confidence            479999999999999999996                    676 59999988754

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.22  E-value=0.006  Score=61.61  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||+|.||++||..+++.   .+|+|+||.+.
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~---~~VilleK~~~   38 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR---ARTAVLTKLYP   38 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC---CCEEEEeCCCC
Confidence            46899999999999999999864   79999999754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.21  E-value=0.033  Score=57.16  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=30.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||+|..|+.+|..+.+.+ ..+|+++.+.+
T Consensus       467 ~gk~VvVIGgG~~a~d~A~~a~r~g-a~~Vt~i~~~~  502 (654)
T PRK12769        467 AGLNVVVLGGGDTAMDCVRTALRHG-ASNVTCAYRRD  502 (654)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcC-CCeEEEeEecC
Confidence            4579999999999999999998886 23699988764

>PLN02815 L-aspartate oxidase

Probab=96.21  E-value=0.0067  Score=61.27  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=31.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      ..+|+|||+|.||+.||..+++.+   +|+|+|+.+..+
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G---~VvlleK~~~~g   64 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG---TVAIITKDEPHE   64 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC---CEEEEECCCCCC
Confidence            469999999999999999998874   799999987543

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.14  E-value=0.013  Score=59.05  Aligned_cols=93  Identities=16%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-   96 (334)
                      +..+-+|||+|--|+.+|..|...+  .+++|+.-.+.+         ....+...-...++..+++.|++++++..+. 
T Consensus       144 ~~~~avVIGGGLLGlEaA~~L~~~G--m~~~Vvh~~~~l---------MerQLD~~ag~lL~~~le~~Gi~~~l~~~t~e  212 (793)
T COG1251         144 NKKKAVVIGGGLLGLEAARGLKDLG--MEVTVVHIAPTL---------MERQLDRTAGRLLRRKLEDLGIKVLLEKNTEE  212 (793)
T ss_pred             ccCCcEEEccchhhhHHHHHHHhCC--CceEEEeecchH---------HHHhhhhHHHHHHHHHHHhhcceeecccchhh
Confidence            4566899999999999999999997  999998765432         1111222344456677788899998876532 


Q ss_pred             -------eEEecccce-eccCeEEEeccCCCCCC
Q 019876           97 -------SSVSLSELR-QLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 -------~~v~~~~~~-~~yd~lIlATGs~~p~~  122 (334)
                             ..+.+.++. +.+|-||.|+|. +|+.
T Consensus       213 i~g~~~~~~vr~~DG~~i~ad~VV~a~GI-rPn~  245 (793)
T COG1251         213 IVGEDKVEGVRFADGTEIPADLVVMAVGI-RPND  245 (793)
T ss_pred             hhcCcceeeEeecCCCcccceeEEEeccc-cccc
Confidence                   234555655 489999999999 4654

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.13  E-value=0.0075  Score=57.83  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .....++|||||||+||..||...++.|  .+.+++..+
T Consensus        24 s~~~~~dVvVIGgGHAG~EAAaAaaR~G--a~TlLlT~~   60 (679)
T KOG2311|consen   24 SSTSTYDVVVIGGGHAGCEAAAAAARLG--ARTLLLTHN   60 (679)
T ss_pred             cCCCcccEEEECCCccchHHHHHHHhcC--CceEEeecc
Confidence            3356789999999999999999999997  888888765

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.12  E-value=0.0086  Score=58.96  Aligned_cols=40  Identities=20%  Similarity=0.275  Sum_probs=35.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ....+|+|||||..|+.+|..++.+|  ++|+|+|+.+...|
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RG--l~v~LvE~~D~AsG   49 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRG--LKVALVEKGDLASG   49 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCC--CeEEEEecCcccCc
Confidence            36689999999999999999999998  99999999976544

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.10  E-value=0.04  Score=58.48  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|||||||..|+.+|..+.+.+...+|+++.+++
T Consensus       667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            4689999999999999999988875113899998865

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.09  E-value=0.017  Score=56.61  Aligned_cols=35  Identities=23%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||+|.+|+..|..|....  .+|+++.+..
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a--~~V~l~~r~~  237 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVA--KEVHIASRAS  237 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhC--CeEEEEEeec
Confidence            5689999999999999999999986  7999998764

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.07  E-value=0.063  Score=51.57  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..+|+|||||..|+-+|..|++                    .|. +|+|+++++..
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~~   53 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKD--------------------SGL-RIALIEAQPAE   53 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEecCCcc
Confidence            4679999999999999999996                    676 59999998654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.07  E-value=0.039  Score=56.55  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...++|+|||+|..|+.+|..+.+.+ ..+|+|+.+++
T Consensus       321 ~~gk~VvVIGgG~~a~e~A~~l~~~G-a~~Vtlv~r~~  357 (652)
T PRK12814        321 HPGKKVVVIGGGNTAIDAARTALRLG-AESVTILYRRT  357 (652)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEeeecC
Confidence            35689999999999999999999886 23699998765

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=96.05  E-value=0.018  Score=54.74  Aligned_cols=115  Identities=13%  Similarity=0.288  Sum_probs=62.4

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEE-eecCccc-cCCCH-----------HHHHH-
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV-GRRGPVQ-AACTA-----------KELRE-  226 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv-~r~~~~~-~~~~~-----------~~~~~-  226 (334)
                      .|+|||||..|+|+|..+++                    .|++ |.++ ++.+.+. .++.+           +|++. 
T Consensus         1 DViVVGgG~AG~eAA~aaAr--------------------~G~~-V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidal   59 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR--------------------MGAK-VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDAL   59 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--------------------TT---EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHT
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------CCCC-EEEEeecccccccccchhhhccccccchhHHHhhh
Confidence            48999999999999999997                    7875 8888 3333332 12222           22222 


Q ss_pred             ------HHcCCceEEEEccCccCCCCCchhhhhccHHHH-HHHHHHHHHHhccCCCCCCCceEEEEEeccccceeecccc
Q 019876          227 ------ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQR-RVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE  299 (334)
Q Consensus       227 ------~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~  299 (334)
                            .....+|.+.+....-  -++-..  .....++ +..+.+++.+.        ...+|+++ ...+++|.  - 
T Consensus        60 gg~m~~~aD~~~i~~~~lN~sk--Gpav~a--~r~qvDr~~y~~~~~~~l~--------~~~nl~i~-~~~V~~l~--~-  123 (392)
T PF01134_consen   60 GGLMGRAADETGIHFRMLNRSK--GPAVHA--LRAQVDRDKYSRAMREKLE--------SHPNLTII-QGEVTDLI--V-  123 (392)
T ss_dssp             T-SHHHHHHHHEEEEEEESTTS---GGCTE--EEEEE-HHHHHHHHHHHHH--------TSTTEEEE-ES-EEEEE--E-
T ss_pred             hhHHHHHHhHhhhhhhcccccC--CCCccc--hHhhccHHHHHHHHHHHHh--------cCCCeEEE-EcccceEE--e-
Confidence                  1223456665542211  111000  0001111 12233444543        35789996 67899997  4 


Q ss_pred             CCCCeeEEEEEEe
Q 019876          300 RSGHVSGVHFEKT  312 (334)
Q Consensus       300 ~~~~v~~v~~~~~  312 (334)
                      ++++|.+|.+.++
T Consensus       124 e~~~v~GV~~~~g  136 (392)
T PF01134_consen  124 ENGKVKGVVTKDG  136 (392)
T ss_dssp             CTTEEEEEEETTS
T ss_pred             cCCeEEEEEeCCC
Confidence            4789999999654

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.04  E-value=0.0087  Score=59.88  Aligned_cols=37  Identities=27%  Similarity=0.494  Sum_probs=33.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ...+|+|||+|.||+.||..++..+  .+|+|+++.+..
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g--~~V~l~~K~~~~   41 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAG--LKVALLSKAPPK   41 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhcC--CcEEEEEccccC
Confidence            4579999999999999999999997  999999997653

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.04  E-value=0.009  Score=55.89  Aligned_cols=35  Identities=31%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ....+|+|||||.+|-+.|..|.+.|  -+|+||||+
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdG--RrVhVIERD   77 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDG--RRVHVIERD   77 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCC--cEEEEEecc
Confidence            34578999999999999999999997  999999987

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=95.99  E-value=0.043  Score=58.90  Aligned_cols=85  Identities=15%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|.+.+ ...|+|++..+..                  ...+.+.+++.||+++.+..+..
T Consensus       316 ~gk~VvViG~G~~g~e~A~~L~~~G-~~vV~vv~~~~~~------------------~~~l~~~L~~~GV~i~~~~~v~~  376 (985)
T TIGR01372       316 PGKRIVVATNNDSAYRAAADLLAAG-IAVVAIIDARADV------------------SPEARAEARELGIEVLTGHVVAA  376 (985)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC-CceEEEEccCcch------------------hHHHHHHHHHcCCEEEcCCeEEE
Confidence            3579999999999999999999986 2357888876432                  11233456777999988865421


Q ss_pred             --------EEecc----c-ceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS----E-LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~----~-~~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.    + ..+++|.|+++.|. .|..
T Consensus       377 i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~-~Pnt  413 (985)
T TIGR01372       377 TEGGKRVSGVAVARNGGAGQRLEADALAVSGGW-TPVV  413 (985)
T ss_pred             EecCCcEEEEEEEecCCceEEEECCEEEEcCCc-Cchh
Confidence                    12222    1 23579999999998 4543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06847 hypothetical protein; Provisional

Probab=95.99  E-value=0.051  Score=51.43  Aligned_cols=36  Identities=31%  Similarity=0.314  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      +.++|+|||||..|+-+|..|++                    .|. +|+|++++..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRR--------------------AGI-AVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCC
Confidence            35789999999999999999986                    676 5999998864

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=95.88  E-value=0.082  Score=50.69  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=30.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhc---CCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~---~~~~~v~vie~~   53 (334)
                      ...+++||||||+|+.+|..+...   .+...|.++|..
T Consensus        17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g   55 (486)
T COG2509          17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG   55 (486)
T ss_pred             hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEec
Confidence            467999999999999999998753   346899999875

>PRK02106 choline dehydrogenase; Validated

Probab=95.87  E-value=0.012  Score=59.23  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=31.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...++||||+|++|+.+|..|.+. ++.+|+|+|+.+
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCC
Confidence            347999999999999999999993 359999999884

>PRK06126 hypothetical protein; Provisional

Probab=95.80  E-value=0.08  Score=53.02  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..+|+|||||.+|+-+|..|++                    .|. +|+|++|++.
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~--------------------~G~-~v~viEr~~~   41 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGR--------------------RGV-DSILVERKDG   41 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCC
Confidence            3679999999999999999997                    687 4999998864

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.77  E-value=0.052  Score=53.42  Aligned_cols=49  Identities=24%  Similarity=0.388  Sum_probs=37.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV   64 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~   64 (334)
                      .....+++|||||.+|-..+..+++...-..|..+|.++..-|.--.|+
T Consensus       113 ~~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv  161 (588)
T COG1086         113 KDNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGV  161 (588)
T ss_pred             ccCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCEEece
Confidence            3456899999999999999999998765456777888877655444443

>PLN02661 Putative thiazole synthesis

Probab=95.77  E-value=0.046  Score=51.32  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc----------CC-CHHHHHHH
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA----------AC-TAKELREI  227 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~----------~~-~~~~~~~~  227 (334)
                      .-.|+|||+|..|+-+|..|++                    .+..+|+++++...+..          .+ ......++
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~--------------------~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~  151 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSK--------------------NPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLF  151 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHH--------------------cCCCeEEEEecCcccccceeeCcccccccccccHHHHH
Confidence            4589999999999999999985                    32236999998754311          11 11234456


Q ss_pred             HcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEE
Q 019876          228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV  307 (334)
Q Consensus       228 l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v  307 (334)
                      |++.|+.+.-. ..+.....          .....+.|.+.+.        ...||+++.++.+.+++  - +++++.||
T Consensus       152 LeElGV~fd~~-dgy~vv~h----------a~e~~stLi~ka~--------~~~gVkI~~~t~V~DLI--~-~~grVaGV  209 (357)
T PLN02661        152 LDELGVPYDEQ-ENYVVIKH----------AALFTSTIMSKLL--------ARPNVKLFNAVAAEDLI--V-KGDRVGGV  209 (357)
T ss_pred             HHHcCCCcccC-CCeeEecc----------hHHHHHHHHHHHH--------hcCCCEEEeCeEeeeEE--e-cCCEEEEE
Confidence            67777765221 11100000          0111122333322        25689999999999998  4 36889999


Q ss_pred             EEEE
Q 019876          308 HFEK  311 (334)
Q Consensus       308 ~~~~  311 (334)
                      .+.+
T Consensus       210 Vvnw  213 (357)
T PLN02661        210 VTNW  213 (357)
T ss_pred             Eeec
Confidence            8754

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.75  E-value=0.08  Score=50.29  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=27.9

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      +|+|||||.+|+-+|..|++                    .|. +|+|+++.+
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~--------------------~G~-~v~l~E~~~   34 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQ--------------------KGI-KTTIFESKS   34 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHc--------------------CCC-eEEEecCCC
Confidence            59999999999999999996                    676 599999763

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.75  E-value=0.011  Score=62.84  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=31.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||+|.||+.||..+.+.+  .+|+|+++.+.
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G--~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHG--ANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCC--CeEEEEecccc
Confidence            468999999999999999999886  99999999764

>TIGR00275 flavoprotein, HI0933 family

Probab=95.73  E-value=0.051  Score=52.24  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=16.8

Q ss_pred             EEEcCCHHHHHHHHHHcc
Q 019876          163 VILGQGNVALDVARILLR  180 (334)
Q Consensus       163 vVIG~G~~g~e~A~~L~~  180 (334)
                      +|||||.+|+-+|..+++
T Consensus         1 vIIGgG~aGl~aAi~aa~   18 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAR   18 (400)
T ss_pred             CEEEEeHHHHHHHHHHHh
Confidence            599999999999999986

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06185 hypothetical protein; Provisional

Probab=95.68  E-value=0.077  Score=50.84  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ...|+|||||.+|+-+|..|++                    .|. +|+|+++.+.
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~--------------------~G~-~v~liE~~~~   40 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLAR--------------------AGV-DVTVLEKHAD   40 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCc
Confidence            3579999999999999999996                    676 5999998753

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.65  E-value=0.014  Score=44.84  Aligned_cols=34  Identities=38%  Similarity=0.443  Sum_probs=30.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +.++|+|||+|..|..-+..|.+.+  .+|+|+.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAG--AKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCc
Confidence            4689999999999999999999997  999999875

>PRK07512 L-aspartate oxidase; Provisional

Probab=95.64  E-value=0.013  Score=58.29  Aligned_cols=34  Identities=29%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      -..+|+|||+|.||+.||..+.  +  .+|+|+|+.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~--~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--P--RPVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--c--CCEEEEECCCC
Confidence            3479999999999999999986  3  69999999875

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.095  Score=48.45  Aligned_cols=87  Identities=17%  Similarity=0.204  Sum_probs=58.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++|+|||+|-+++..|.+|.+..  .+|+++-+.+..-        +    .+.+.+.+.   +..++.++.++.+.
T Consensus       141 ~~~k~v~ViGgG~sAve~Al~L~~~a--~~Vtlv~r~~~~r--------a----~~~~~~~l~---~~~~i~~~~~~~i~  203 (305)
T COG0492         141 FKGKDVVVIGGGDSAVEEALYLSKIA--KKVTLVHRRDEFR--------A----EEILVERLK---KNVKIEVLTNTVVK  203 (305)
T ss_pred             ccCCeEEEEcCCHHHHHHHHHHHHhc--CeEEEEecCcccC--------c----CHHHHHHHH---hcCCeEEEeCCcee
Confidence            34579999999999999999999986  7899998876421        1    122322222   22268887776542


Q ss_pred             -------eEEecccc-----eeccCeEEEeccCCCCC
Q 019876           97 -------SSVSLSEL-----RQLYHVVVLAYGAESDR  121 (334)
Q Consensus        97 -------~~v~~~~~-----~~~yd~lIlATGs~~p~  121 (334)
                             ..+.+++.     ...+|.++++.|.. |.
T Consensus       204 ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~-p~  239 (305)
T COG0492         204 EILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHL-PN  239 (305)
T ss_pred             EEecCccceEEEEecCCceEEEEeceEEEecCCC-Cc
Confidence                   23333332     34799999999984 54

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.62  E-value=0.069  Score=52.43  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +|+|+|||+|..|+..|..|++.+.+.+|+.+|.++.
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            4789999999999999999999866689999998754

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=95.53  E-value=0.017  Score=52.97  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..+|+|||||.||++|+..|.+.|  .+..||.+.
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~G--k~c~iv~~g   34 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAG--KRCAIVNRG   34 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcC--CcEEEEeCC
Confidence            468999999999999999999998  888888876

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.53  E-value=0.032  Score=54.91  Aligned_cols=58  Identities=21%  Similarity=0.209  Sum_probs=44.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++|+|||+|.+|+++|..|.+                    .|. +|+++++++..    ....+.+.|+..||.+++
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~--------------------~G~-~V~~~d~~~~~----~~~~~~~~l~~~gv~~~~   69 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLE--------------------LGA-RVTVVDDGDDE----RHRALAAILEALGATVRL   69 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEEeCCchh----hhHHHHHHHHHcCCEEEE
Confidence            57899999999999999999986                    676 59999876532    123445567778999987


Q ss_pred             ccC
Q 019876          238 RED  240 (334)
Q Consensus       238 ~~~  240 (334)
                      +..
T Consensus        70 ~~~   72 (480)
T PRK01438         70 GPG   72 (480)
T ss_pred             CCC
Confidence            653

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.50  E-value=0.063  Score=50.85  Aligned_cols=93  Identities=13%  Similarity=0.111  Sum_probs=61.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCC--CCeEE-EEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVD-IIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~--~~~v~-vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      .++|-|||+|+.|-..|..|.+...  +.+|. ||+....          .+..+++.+..+-.+.++..|+.++.+..|
T Consensus       347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----------m~kiLPeyls~wt~ekir~~GV~V~pna~v  416 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----------MEKILPEYLSQWTIEKIRKGGVDVRPNAKV  416 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC----------hhhhhHHHHHHHHHHHHHhcCceeccchhh
Confidence            5899999999999888888877642  34444 4443211          122233445555566677889999888765


Q ss_pred             c--------eEEecccce-eccCeEEEeccCCCCCC
Q 019876           96 G--------SSVSLSELR-QLYHVVVLAYGAESDRA  122 (334)
Q Consensus        96 ~--------~~v~~~~~~-~~yd~lIlATGs~~p~~  122 (334)
                      .        ..+.+.++. ...|.||+|+|. .|+.
T Consensus       417 ~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~-ePN~  451 (659)
T KOG1346|consen  417 ESVRKCCKNLVLKLSDGSELRTDLVVVAVGE-EPNS  451 (659)
T ss_pred             hhhhhhccceEEEecCCCeeeeeeEEEEecC-CCch
Confidence            2        124555554 489999999999 4654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=95.49  E-value=0.036  Score=52.90  Aligned_cols=34  Identities=35%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..+|+|||||.+|+-+|..|++                    .|. +|+|+++.+
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~--------------------~G~-~v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALAD--------------------AGL-SVALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEeCCC
Confidence            3579999999999999999996                    676 599999975

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.49  E-value=0.018  Score=55.37  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=30.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ++|+|||||.+|+++|..|++                    .|. +|+|+++++..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr--------------------~Gl-~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAK--------------------RGV-PVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEEccCcc
Confidence            589999999999999999996                    676 59999987654

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=95.48  E-value=0.021  Score=55.42  Aligned_cols=42  Identities=24%  Similarity=0.376  Sum_probs=36.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCCCCCcccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~~~~gg~~   60 (334)
                      .++.=|||+|.|+|+||.+|.+.+  |+-+|+|+|+.+.+||.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl   45 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL   45 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence            357889999999999999999876  788999999998877654

>PRK08244 hypothetical protein; Provisional

Probab=95.48  E-value=0.13  Score=50.84  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -.|+|||||.+|+-+|..|++                    .|. +|+|+++++..
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~--------------------~G~-~v~viEr~~~~   37 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELAL--------------------AGV-KTCVIERLKET   37 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCCCC
Confidence            369999999999999999996                    677 59999998643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=95.47  E-value=0.018  Score=55.65  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                      +|+|||||.+|+++|..|++                    .|. +|+|+++++....
T Consensus         2 ~VvVIGgGlAGleaA~~LAr--------------------~G~-~V~LiE~rp~~~~   37 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQ--------------------AGV-PVILYEMRPEKLT   37 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEeccccccC
Confidence            69999999999999999996                    676 5999998776433

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.43  E-value=0.088  Score=51.02  Aligned_cols=161  Identities=20%  Similarity=0.198  Sum_probs=88.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS   98 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~   98 (334)
                      .++|+|+|-|-.|+++|..|.+.|  ++|+++|.++.+         +.   ...      ..+...++++..+..-.  
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~---------~~---~~~------~~~~~~~i~~~~g~~~~--   64 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAP---------EG---LAA------QPLLLEGIEVELGSHDD--   64 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCc---------cc---hhh------hhhhccCceeecCccch--
Confidence            689999999999999999999998  999999977542         10   000      11123356654443211  


Q ss_pred             EecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcC-CHHH--HHHH
Q 019876           99 VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ-GNVA--LDVA  175 (334)
Q Consensus        99 v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~-G~~g--~e~A  175 (334)
                          .....+|.||+..|. .+..|-+.-....|+--..+..-++...          ...+-|+|=|. |-+-  .=++
T Consensus        65 ----~~~~~~d~vV~SPGi-~~~~p~v~~A~~~gi~i~~dieL~~r~~----------~~~p~vaITGTNGKTTTTsli~  129 (448)
T COG0771          65 ----EDLAEFDLVVKSPGI-PPTHPLVEAAKAAGIEIIGDIELFYRLS----------GEAPIVAITGTNGKTTTTSLIA  129 (448)
T ss_pred             ----hccccCCEEEECCCC-CCCCHHHHHHHHcCCcEEeHHHHHHHhc----------CCCCEEEEECCCchHHHHHHHH
Confidence                122368999999997 3444322111122222111222111111          02344555552 3221  1223


Q ss_pred             HHHccCC-cccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          176 RILLRPT-EELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       176 ~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      ..|.... +-.-+-+|...+++.+......++.+++-++.-+
T Consensus       130 ~~l~~~G~~~~lgGNIG~p~l~~~~~~~~~d~~VlElSSfQL  171 (448)
T COG0771         130 HLLKAAGLDALLGGNIGTPALELLEQAEPADVYVLELSSFQL  171 (448)
T ss_pred             HHHHhcCCCceeccccCccHHHhhcccCCCCEEEEEcccccc
Confidence            3333322 2245667777778877654445699999887543

>PRK07190 hypothetical protein; Provisional

Probab=95.38  E-value=0.14  Score=50.65  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      -.|+|||+|.+|+-+|..|++                    .|. +|.|+++.+.
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar--------------------~Gi-~V~llEr~~~   39 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQL--------------------CGL-NTVIVDKSDG   39 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHH--------------------cCC-CEEEEeCCCc
Confidence            479999999999999999986                    677 4999998864

>PRK10015 oxidoreductase; Provisional

Probab=95.37  E-value=0.11  Score=50.46  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -.|+|||||..|+-+|..|++                    .|. +|.+++|....
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~--------------------~G~-~VlliEr~~~~   40 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMAR--------------------AGL-DVLVIERGDSA   40 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHh--------------------CCC-eEEEEecCCCC
Confidence            369999999999999999996                    676 59999988654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.37  E-value=0.031  Score=57.14  Aligned_cols=62  Identities=21%  Similarity=0.395  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------cC--CCHH---HHH
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------AA--CTAK---ELR  225 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~~--~~~~---~~~  225 (334)
                      .+++|+|||+|..|+.+|..|++                    .|. +|+++++.+.+.       .+  +...   ...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--------------------~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~  367 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--------------------AGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRR  367 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--------------------cCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHH
Confidence            58999999999999999999996                    676 599999887531       11  2221   233


Q ss_pred             HHHcCCceEEEEccC
Q 019876          226 EILGIKNLYVHIRED  240 (334)
Q Consensus       226 ~~l~~~gv~~~~~~~  240 (334)
                      +.+...||+++++..
T Consensus       368 ~~~~~~Gv~~~~~~~  382 (639)
T PRK12809        368 EIFTAMGIDFHLNCE  382 (639)
T ss_pred             HHHHHCCeEEEcCCc
Confidence            566788999988764

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.37  E-value=0.029  Score=55.41  Aligned_cols=62  Identities=15%  Similarity=0.210  Sum_probs=44.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------cC--CCHH---HHH
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------AA--CTAK---ELR  225 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~~--~~~~---~~~  225 (334)
                      .+++|+|||+|..|+.+|..|++                    .|. +|+|+++.+.+.       +.  ....   ...
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~--------------------~g~-~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~  200 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNR--------------------AGH-TVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRI  200 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--------------------cCC-eEEEEecCCCCCceeeccCCCccCCHHHHHHHH
Confidence            56899999999999999999996                    565 599999876431       11  1222   223


Q ss_pred             HHHcCCceEEEEccC
Q 019876          226 EILGIKNLYVHIRED  240 (334)
Q Consensus       226 ~~l~~~gv~~~~~~~  240 (334)
                      +.++..||+++++..
T Consensus       201 ~~~~~~Gv~~~~~~~  215 (485)
T TIGR01317       201 DLLSAEGIDFVTNTE  215 (485)
T ss_pred             HHHHhCCCEEECCCE
Confidence            455678999987654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.33  E-value=0.025  Score=46.90  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ||+|||||..|.++|..|..++  .+|+|+.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccH
Confidence            6999999999999999999997  9999998863

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.32  E-value=0.021  Score=56.38  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +.++|+|||+|.+|+-+|+.|..                    .|.+ |+|++.|+++
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~--------------------~G~~-V~VLEARdRv   50 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQD--------------------FGFD-VLVLEARDRV   50 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHH--------------------cCCc-eEEEeccCCc
Confidence            45799999999999999999996                    6774 9999888654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.32  E-value=0.063  Score=53.55  Aligned_cols=35  Identities=29%  Similarity=0.279  Sum_probs=29.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||+|.+|.-.|..|.+..  .+|++.-|+.
T Consensus       182 ~gKrVlVVG~g~Sg~DIa~el~~~a--~~v~~s~R~~  216 (531)
T PF00743_consen  182 KGKRVLVVGGGNSGADIAVELSRVA--KKVYLSTRRG  216 (531)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHTTTS--CCEEEECC--
T ss_pred             CCCEEEEEeCCHhHHHHHHHHHHhc--CCeEEEEecc
Confidence            5789999999999999999998875  7888877763

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.29  E-value=0.11  Score=49.91  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=28.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .+|+|||||.+|+-+|..|++                    .|. +|+|+++.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~--------------------~G~-~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKE--------------------SDL-RIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHh--------------------CCC-EEEEEcCC
Confidence            579999999999999999986                    676 59999986

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=95.29  E-value=0.024  Score=39.94  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=26.4

Q ss_pred             EEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       164 VIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      |||+|.+|+-+|..|++                    .+. +|+|+++++.+
T Consensus         1 IiGaG~sGl~aA~~L~~--------------------~g~-~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAK--------------------AGY-RVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHH--------------------TTS-EEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHH--------------------CCC-cEEEEecCccc
Confidence            89999999999999996                    565 79999999765

...

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.26  E-value=0.031  Score=42.83  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++++|+|||||.+|..-+..|.+                    .|+ +|+++....
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~--------------------~gA-~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLE--------------------AGA-KVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCC--------------------CTB-EEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--------------------CCC-EEEEECCch
Confidence            68999999999999999999996                    676 699998764

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=95.22  E-value=0.062  Score=54.10  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=27.8

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .|+|||||..|+++|..+++                    .|. +|.++++.
T Consensus         6 DVIVVGGGpAG~eAA~~aAR--------------------~G~-kV~LiE~~   36 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAAR--------------------MGA-KTLLLTHN   36 (618)
T ss_pred             eEEEECchHHHHHHHHHHHH--------------------cCC-cEEEEecc
Confidence            69999999999999999996                    676 49999887

>PRK06834 hypothetical protein; Provisional

Probab=95.20  E-value=0.16  Score=50.14  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=29.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..|+|||+|.+|+-+|..|++                    .|. +|+|+++.+.
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~--------------------~G~-~v~vlEr~~~   37 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELAL--------------------AGV-DVAIVERRPN   37 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCCC
Confidence            579999999999999999996                    677 5999998864

>TIGR01810 betA choline dehydrogenase

Probab=95.12  E-value=0.023  Score=56.82  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++||||+|.||..+|..|.+.+ ..+|.|+|+.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~-~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDV-SNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCC-CCeEEEEecCC
Confidence            5899999999999999999874 57999999875

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.11  E-value=0.041  Score=45.70  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=30.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||||..|..-+..|.+.+  .+|+||+++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp~   45 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSPE   45 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCc
Confidence            5689999999999999999999987  999999643

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.11  E-value=0.092  Score=51.78  Aligned_cols=62  Identities=11%  Similarity=0.139  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc--c-----C-CCH-----HHH
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ--A-----A-CTA-----KEL  224 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~--~-----~-~~~-----~~~  224 (334)
                      .+++|+|||+|..|+.+|..|++.                  ..|. +|+|+++.+.+.  .     + +..     ..+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~------------------~~g~-~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~   85 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKA------------------HDGA-RVDIIERLPTPFGLVRSGVAPDHPETKNVTNQF   85 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhh------------------CCCC-eEEEEecCCCCcceEeeccCCCcchhHHHHHHH
Confidence            578999999999999999999730                  1354 699999986431  1     1 111     234


Q ss_pred             HHHHcCCceEEEEc
Q 019876          225 REILGIKNLYVHIR  238 (334)
Q Consensus       225 ~~~l~~~gv~~~~~  238 (334)
                      .+.+...+|+++.+
T Consensus        86 ~~~~~~~~v~~~~n   99 (491)
T PLN02852         86 SRVATDDRVSFFGN   99 (491)
T ss_pred             HHHHHHCCeEEEcC
Confidence            45566678886653

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=95.05  E-value=0.022  Score=52.04  Aligned_cols=39  Identities=21%  Similarity=0.358  Sum_probs=35.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+++||||||..|++.|..|.-+.|..+|.|+|++...
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l   85 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL   85 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence            468999999999999999999988888999999998653

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.05  E-value=0.014  Score=52.63  Aligned_cols=41  Identities=22%  Similarity=0.268  Sum_probs=34.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcC----CCCeEEEEcCCCCCc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPF   57 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~----~~~~v~vie~~~~~g   57 (334)
                      .+.++|+|||||..|..+|.+|.+..    ....|+|||.....|
T Consensus         8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~   52 (380)
T KOG2852|consen    8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG   52 (380)
T ss_pred             CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence            45689999999999999999999875    147999999875543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=94.98  E-value=0.15  Score=49.49  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -.|+|||||..|+-+|..|++                    .|. +|.|++|....
T Consensus         6 ~DViIVGaGpAG~~aA~~La~--------------------~G~-~V~llEr~~~~   40 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAR--------------------EGA-QVLVIERGNSA   40 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHh--------------------CCC-eEEEEEcCCCC
Confidence            479999999999999999996                    676 59999998643

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.97  E-value=0.024  Score=52.21  Aligned_cols=91  Identities=18%  Similarity=0.156  Sum_probs=63.6

Q ss_pred             cCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        14 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      +.+..+-+-+|||||+.++.||-.|...+  ++++|.-|.-.+         .+|  ..+..+...+.++..|+.|....
T Consensus       193 sl~~~PGkTLvVGa~YVaLECAgFL~gfg--~~vtVmVRSI~L---------rGF--Dqdmae~v~~~m~~~Gikf~~~~  259 (503)
T KOG4716|consen  193 SLPYEPGKTLVVGAGYVALECAGFLKGFG--YDVTVMVRSILL---------RGF--DQDMAELVAEHMEERGIKFLRKT  259 (503)
T ss_pred             cccCCCCceEEEccceeeeehhhhHhhcC--CCcEEEEEEeec---------ccc--cHHHHHHHHHHHHHhCCceeecc
Confidence            34445668889999999999999999987  888887665321         232  45677778888888999987553


Q ss_pred             EEc-------eE--E------ecccceeccCeEEEeccC
Q 019876           94 TLG-------SS--V------SLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        94 ~v~-------~~--v------~~~~~~~~yd~lIlATGs  117 (334)
                      ...       ..  |      +.+.++..||.|++|.|-
T Consensus       260 vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR  298 (503)
T KOG4716|consen  260 VPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGR  298 (503)
T ss_pred             cceeeeeccCCcEEEEeecccccccccchhhhhhhhhcc
Confidence            211       01  1      112233579999999997

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=94.97  E-value=0.11  Score=48.74  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=69.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC----c----cccCCCHHHHHH-----
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG----P----VQAACTAKELRE-----  226 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~----~----~~~~~~~~~~~~-----  226 (334)
                      -.|+|||+|-.|.-+|..|++                    .| ++|++|+|.-    +    ++.+-.-..+.+     
T Consensus        46 ~DvIIVGAGV~GsaLa~~L~k--------------------dG-RrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~D  104 (509)
T KOG1298|consen   46 ADVIIVGAGVAGSALAYALAK--------------------DG-RRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLED  104 (509)
T ss_pred             ccEEEECCcchHHHHHHHHhh--------------------CC-cEEEEEecccccchHHHHHhcCcchhHHHHHhCHHH
Confidence            459999999999999999997                    45 5799999972    1    122222212211     


Q ss_pred             ---HHc---CCceEEEEccCccCCC-C---CchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeec
Q 019876          227 ---ILG---IKNLYVHIREDDLIKS-P---TDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE  296 (334)
Q Consensus       227 ---~l~---~~gv~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~  296 (334)
                         -+.   ..|..++-+.++.+.. |   ...++.+-+-+.-|+.+-|++.+.        ...+|++..++ +.++. 
T Consensus       105 cve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~--------slpNV~~eeGt-V~sLl-  174 (509)
T KOG1298|consen  105 CVEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAA--------SLPNVRLEEGT-VKSLL-  174 (509)
T ss_pred             HhhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHh--------cCCCeEEeeee-HHHHH-
Confidence               111   1244455444333210 1   001111223344556666666654        57889998666 56666 


Q ss_pred             cccCCCCeeEEEEEE
Q 019876          297 SNERSGHVSGVHFEK  311 (334)
Q Consensus       297 ~~~~~~~v~~v~~~~  311 (334)
                       . ++|-|+||+.++
T Consensus       175 -e-e~gvvkGV~yk~  187 (509)
T KOG1298|consen  175 -E-EEGVVKGVTYKN  187 (509)
T ss_pred             -h-ccCeEEeEEEec
Confidence             3 478999999876

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.96  E-value=0.046  Score=44.10  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+++++|||+|-+|-.++..|..                    .|+++|+++.|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~--------------------~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAA--------------------LGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHH--------------------TTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHH--------------------cCCCEEEEEECCH
Confidence            68999999999999999999996                    7999999999873

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=94.95  E-value=0.17  Score=48.40  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=28.5

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC-cceEEEEeecCc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGP  214 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~Vtiv~r~~~  214 (334)
                      .|+|||||.+|+-+|..|++                    .| .-+|+|+++++.
T Consensus         3 dv~IvGaG~aGl~~A~~L~~--------------------~g~g~~v~liE~~~~   37 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQ--------------------AAPHLPVTVVDAAPA   37 (403)
T ss_pred             CEEEECccHHHHHHHHHHhc--------------------CCCCCEEEEEeCCCc
Confidence            58999999999999999996                    44 236999999864

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=94.93  E-value=0.28  Score=48.06  Aligned_cols=28  Identities=7%  Similarity=0.065  Sum_probs=23.4

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                      +.|+++++++.+++|.  . ++++|.+|.+.
T Consensus       143 ~~gv~i~~~t~v~~l~--~-~~g~v~gv~~~  170 (466)
T PRK08274        143 RLGVEIRYDAPVTALE--L-DDGRFVGARAG  170 (466)
T ss_pred             HCCCEEEcCCEEEEEE--e-cCCeEEEEEEE
Confidence            5689999999999998  4 36789988874

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.90  E-value=0.1  Score=45.41  Aligned_cols=52  Identities=21%  Similarity=0.332  Sum_probs=37.8

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++|+|||||.+|..-+..|.+                    .|+ +|+++....       .+++.++.+..+|.++-
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~--------------------~ga-~VtVvsp~~-------~~~l~~l~~~~~i~~~~   59 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLK--------------------AGA-QLRVIAEEL-------ESELTLLAEQGGITWLA   59 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--------------------CCC-EEEEEcCCC-------CHHHHHHHHcCCEEEEe
Confidence            67999999999999999999986                    676 599986532       14555554444565544

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=94.88  E-value=0.074  Score=56.68  Aligned_cols=60  Identities=15%  Similarity=0.273  Sum_probs=42.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------cCC--CHHHH---H
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------AAC--TAKEL---R  225 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~~~--~~~~~---~  225 (334)
                      .+++|+|||||..|+.+|..|++                    .|. +|+|+++++.+.       +.+  ....+   .
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr--------------------~G~-~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~i  594 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLAR--------------------AGH-PVTVFEKKEKPGGVVKNIIPEFRISAESIQKDI  594 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecccccCceeeecccccCCCHHHHHHHH
Confidence            56899999999999999999996                    675 699999875321       111  12222   2


Q ss_pred             HHHcCCceEEEEc
Q 019876          226 EILGIKNLYVHIR  238 (334)
Q Consensus       226 ~~l~~~gv~~~~~  238 (334)
                      +.+...||+++++
T Consensus       595 e~l~~~GVe~~~g  607 (1012)
T TIGR03315       595 ELVKFHGVEFKYG  607 (1012)
T ss_pred             HHHHhcCcEEEEe
Confidence            3455679999887

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=94.87  E-value=0.3  Score=48.49  Aligned_cols=29  Identities=17%  Similarity=0.373  Sum_probs=24.0

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                      +.||++++++.+++|.  . ++++|.+|.+..
T Consensus       202 ~~gv~i~~~t~v~~l~--~-~~g~V~Gv~~~~  230 (506)
T PRK06481        202 ERKIPLFVNADVTKIT--E-KDGKVTGVKVKI  230 (506)
T ss_pred             HcCCeEEeCCeeEEEE--e-cCCEEEEEEEEe
Confidence            5689999999999998  4 367899988753

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=94.85  E-value=0.067  Score=57.42  Aligned_cols=61  Identities=15%  Similarity=0.110  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------cCC--CH---HHHH
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------AAC--TA---KELR  225 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~~~--~~---~~~~  225 (334)
                      .+++|+|||||..|+.+|..|++                    .|. +|+|+++.+.+.       +.+  ..   ....
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~--------------------~G~-~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~  487 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVK--------------------YGV-DVTVYEALHVVGGVLQYGIPSFRLPRDIIDREV  487 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecCCCCcceeeccCCccCCCHHHHHHHH
Confidence            57899999999999999999996                    675 699999875431       111  11   1233


Q ss_pred             HHHcCCceEEEEcc
Q 019876          226 EILGIKNLYVHIRE  239 (334)
Q Consensus       226 ~~l~~~gv~~~~~~  239 (334)
                      +.+...||+++++.
T Consensus       488 ~~l~~~Gv~~~~~~  501 (1006)
T PRK12775        488 QRLVDIGVKIETNK  501 (1006)
T ss_pred             HHHHHCCCEEEeCC
Confidence            45667899999885

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=94.79  E-value=0.025  Score=54.94  Aligned_cols=30  Identities=33%  Similarity=0.532  Sum_probs=28.0

Q ss_pred             EECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        24 IIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      |||+|.||++||..+++.+  .+|+|+||.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~G--a~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAG--ASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence            7999999999999999997  99999999874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PLN02463 lycopene beta cyclase

Probab=94.78  E-value=0.19  Score=49.02  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=29.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      -.|+|||||..|+-+|..|++                    .|. +|.+++++..
T Consensus        29 ~DVvIVGaGpAGLalA~~La~--------------------~Gl-~V~liE~~~~   62 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSE--------------------AGL-SVCCIDPSPL   62 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEeccCcc
Confidence            379999999999999999986                    576 5999998753

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=94.77  E-value=0.13  Score=54.42  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          155 DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       155 ~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ....+++|+|||+|..|+-+|..|.+                    .| ..|++.+|+++.
T Consensus      1781 ~~rtg~~vaiigsgpaglaaadqlnk--------------------~g-h~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNK--------------------AG-HTVTVYERSDRV 1820 (2142)
T ss_pred             ccccCcEEEEEccCchhhhHHHHHhh--------------------cC-cEEEEEEecCCc
Confidence            35589999999999999999999996                    45 479999999865

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=94.65  E-value=0.12  Score=49.24  Aligned_cols=35  Identities=31%  Similarity=0.453  Sum_probs=30.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -.|+|||||..|+-+|..|++                    .|. +|+|+++....
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~~   40 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQ--------------------SGL-RVALLAPRAPP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHh--------------------CCC-eEEEEecCCCc
Confidence            479999999999999999996                    676 69999988654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.61  E-value=0.11  Score=50.84  Aligned_cols=74  Identities=16%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS   98 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~   98 (334)
                      .++|.|+|.|.+|+++|..|++.|  ++|+++|..+..          ..   ...   . ..++..|+.+..+...   
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~----------~~---~~~---~-~~l~~~gi~~~~~~~~---   71 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEE----------EL---GEV---S-NELKELGVKLVLGENY---   71 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCc----------cc---hHH---H-HHHHhCCCEEEeCCCC---
Confidence            468999999999999999999997  999999976421          10   011   1 1234567776544210   


Q ss_pred             EecccceeccCeEEEeccC
Q 019876           99 VSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        99 v~~~~~~~~yd~lIlATGs  117 (334)
                        . +.-..+|.||++.|.
T Consensus        72 --~-~~~~~~dlVV~Spgi   87 (458)
T PRK01710         72 --L-DKLDGFDVIFKTPSM   87 (458)
T ss_pred             --h-HHhccCCEEEECCCC
Confidence              0 111358999998887

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.60  E-value=0.063  Score=46.55  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||||..|...|..|.+.+  .+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCC
Confidence            4679999999999999999999987  899999864

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=94.57  E-value=0.048  Score=49.44  Aligned_cols=38  Identities=32%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhh-----cCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLK-----AHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~-----~~~~~~v~vie~~~~   55 (334)
                      ++++|+|||+|..|++.|..+.+     .-|.++|++++....
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~   44 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT   44 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence            46899999999999999988877     337799999987644

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.55  E-value=0.05  Score=42.29  Aligned_cols=71  Identities=21%  Similarity=0.214  Sum_probs=45.5

Q ss_pred             EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEEec
Q 019876           22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSL  101 (334)
Q Consensus        22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v~~  101 (334)
                      |+|+|.|..|...+..|.+.+  .+|+++|+++.                  .    .+.+...++.++.+...... .+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~------------------~----~~~~~~~~~~~i~gd~~~~~-~l   55 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPE------------------R----VEELREEGVEVIYGDATDPE-VL   55 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHH------------------H----HHHHHHTTSEEEES-TTSHH-HH
T ss_pred             eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcH------------------H----HHHHHhcccccccccchhhh-HH
Confidence            689999999999999999964  79999998631                  1    12223445666554332211 11


Q ss_pred             ccc-eeccCeEEEeccC
Q 019876          102 SEL-RQLYHVVVLAYGA  117 (334)
Q Consensus       102 ~~~-~~~yd~lIlATGs  117 (334)
                      ... -.+++.+|++|+.
T Consensus        56 ~~a~i~~a~~vv~~~~~   72 (116)
T PF02254_consen   56 ERAGIEKADAVVILTDD   72 (116)
T ss_dssp             HHTTGGCESEEEEESSS
T ss_pred             hhcCccccCEEEEccCC
Confidence            111 2378999999885

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=94.46  E-value=0.06  Score=51.95  Aligned_cols=39  Identities=15%  Similarity=0.203  Sum_probs=35.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      +..+||+||||..|.+.+..|.+..|..+|.|+|+.+.+
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~   40 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV   40 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence            457999999999999999999999999999999998654

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06996 hypothetical protein; Provisional

Probab=94.44  E-value=0.29  Score=46.92  Aligned_cols=37  Identities=32%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc---ceEEEEeecCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGP  214 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~Vtiv~r~~~  214 (334)
                      ....|+|||||.+|+-+|..|++                    .|.   .+|+++++.+.
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~--------------------~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLAR--------------------RSATRALSIALIDAREP   49 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhc--------------------CCCcCCceEEEecCCCC
Confidence            34589999999999999999996                    442   35999998753

>PLN02785 Protein HOTHEAD

Probab=94.30  E-value=0.059  Score=54.43  Aligned_cols=34  Identities=26%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++++|||+|.||+.+|..|.+ .  .+|.|+|+.+
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~--~~VLllE~G~   87 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-N--FSVLLLERGG   87 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-C--CcEEEEecCC
Confidence            35899999999999999999999 3  8999999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.19  E-value=0.083  Score=44.31  Aligned_cols=35  Identities=34%  Similarity=0.415  Sum_probs=29.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .+.+|+|+|+|.+|..|+..+...+  ++++++|..+
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCH
Confidence            4689999999999999999999997  9999999763

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=94.12  E-value=0.066  Score=53.60  Aligned_cols=36  Identities=25%  Similarity=0.245  Sum_probs=31.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ....++||||+|.+|..+|..|...  +.+|.|+|...
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~--g~~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDA--GLSVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCC--CCeEEEEeCCC
Confidence            3568999999999999999999955  59999999874

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=94.09  E-value=0.06  Score=49.92  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=28.6

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      .|+|||||..|+-+|..|++                    .|. +|+|++|++...
T Consensus         3 dV~IvGaG~aGl~~A~~L~~--------------------~G~-~v~i~E~~~~~~   37 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALAR--------------------AGI-DVTIIERRPDPR   37 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHH--------------------TTC-EEEEEESSSSCC
T ss_pred             eEEEECCCHHHHHHHHHHHh--------------------ccc-ccccchhccccc
Confidence            69999999999999999997                    676 599999986543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.08  E-value=0.12  Score=52.08  Aligned_cols=64  Identities=14%  Similarity=0.103  Sum_probs=44.7

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------c--CCC----HH
Q 019876          156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------A--ACT----AK  222 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~--~~~----~~  222 (334)
                      ...+++|+|||+|.+|+-+|..|++                    .|. +|+++++.+.+.       +  .+.    ..
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~--------------------~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~  192 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRR--------------------MGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDA  192 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHH
Confidence            3478999999999999999999986                    677 599998765331       0  111    12


Q ss_pred             HHHHHHcCCceEEEEccCc
Q 019876          223 ELREILGIKNLYVHIREDD  241 (334)
Q Consensus       223 ~~~~~l~~~gv~~~~~~~~  241 (334)
                      ++ +.+...|++++++...
T Consensus       193 ~l-~~~~~~Gv~~~~~~~~  210 (564)
T PRK12771        193 EI-QRILDLGVEVRLGVRV  210 (564)
T ss_pred             HH-HHHHHCCCEEEeCCEE
Confidence            22 3345678988887543

>PTZ00188 adrenodoxin reductase; Provisional

Probab=94.07  E-value=0.075  Score=52.12  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..++|+|||+|+.|+.+|..|+.                   ..+. +|+|+++.+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~-------------------~~g~-~VtlfEk~p~   74 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLK-------------------HERV-KVDIFEKLPN   74 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-------------------hcCC-eEEEEecCCC
Confidence            57899999999999999997763                   2455 5999999864

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.02  E-value=0.11  Score=41.97  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~   53 (334)
                      ..++++|||+|-+|-.++.+|...+  .+ |+|+.|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g--~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALG--AKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTT--SSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence            4689999999999999999999997  54 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=93.96  E-value=0.069  Score=51.79  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHcc
Q 019876          160 DTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ++|+|||||.+|+-+|..|++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~   21 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHK   21 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHH
Confidence            479999999999999999996

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.86  E-value=0.097  Score=44.48  Aligned_cols=33  Identities=33%  Similarity=0.466  Sum_probs=28.1

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +|.|||+|..|...|..++..|  ++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChH
Confidence            6899999999999999999997  99999998753

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=93.85  E-value=0.24  Score=47.52  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      -.|+|||+|..|.-+|..|++                    .|. +|.+++++...-
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~--------------------~G~-~VlvlEk~~~~G   39 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAK--------------------AGL-DVLVLEKGSEPG   39 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHH--------------------cCC-eEEEEecCCCCC
Confidence            369999999999999999997                    675 699999986543

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.80  E-value=0.13  Score=41.87  Aligned_cols=35  Identities=20%  Similarity=0.289  Sum_probs=31.1

Q ss_pred             CeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +||+|||+ |..|.+.|..|...+-..++.|+|..+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            58999999 999999999999887557899999864

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.80  E-value=0.098  Score=43.44  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHcc
Q 019876          158 STDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .+++|+|||||.+|..-+..|.+
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~   34 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKD   34 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh
Confidence            68999999999999999999986

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.78  E-value=0.22  Score=46.08  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=29.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|.|+|+|..|...|..|.+.+  ..|+++-+.+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~   33 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSR   33 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHH
Confidence            68999999999999999999997  7888887653

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.75  E-value=0.097  Score=51.00  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=30.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      |+|+|+|+|..|...|..|.+.+  .+++++++++.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~   34 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEE   34 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CcEEEEECCHH
Confidence            58999999999999999999986  89999998643

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=93.74  E-value=0.071  Score=49.11  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=32.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+.|-|||||.||-.||..+++.|  ..|.++|.++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~G--v~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRG--VPVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcC--CcEEEEEcccc
Confidence            457999999999999999999998  99999998865

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=93.74  E-value=0.081  Score=50.82  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=29.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++|+|||+|.+|+-+|..|++                    .|. +|+|++|..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~--------------------~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQ--------------------RGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeCCC
Confidence            489999999999999999996                    564 699999875

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.70  E-value=0.16  Score=49.50  Aligned_cols=37  Identities=27%  Similarity=0.454  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..++|+|||+|.+|+-.|+.|.+                    .|. +|++++|.+.+
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~--------------------~g~-~v~vfEr~~~i   41 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLR--------------------EGH-EVVVFERTDDI   41 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHH--------------------CCC-CceEEEecCCc
Confidence            46899999999999999999996                    565 59999999654

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=93.68  E-value=0.095  Score=52.34  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...++.+|||||.||...|..|.+. |+++|.|+|+...
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~   92 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGD   92 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCC
Confidence            4579999999999999999999987 5899999998754

>PRK06475 salicylate hydroxylase; Provisional

Probab=93.68  E-value=0.12  Score=49.50  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=30.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ++|+|||||..|+-+|..|++                    .|. +|+|+++.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~--------------------~G~-~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAA--------------------RGW-AVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCcc
Confidence            789999999999999999986                    676 59999988643

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.66  E-value=0.24  Score=43.54  Aligned_cols=52  Identities=21%  Similarity=0.369  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      ++++|+|||||.+|..=+..|.+                    .|+ +||||...       ..+++.++.....++++-
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~--------------------~gA-~VtVVap~-------i~~el~~l~~~~~i~~~~   75 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLK--------------------KGC-YVYILSKK-------FSKEFLDLKKYGNLKLIK   75 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--------------------CCC-EEEEEcCC-------CCHHHHHHHhCCCEEEEe
Confidence            57899999999999998888886                    576 59998543       234455555555566664

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.64  E-value=0.3  Score=45.89  Aligned_cols=36  Identities=31%  Similarity=0.363  Sum_probs=31.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...+|+|||+|..|..+|..|.+.| -.+++|+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCc
Confidence            3578999999999999999999997 23899999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.62  E-value=0.12  Score=47.92  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +..++|+|||+|..|...|..|.+.+  .+|+++.++
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~   37 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRS   37 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeC
Confidence            45579999999999999999999987  999999875

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.61  E-value=0.26  Score=45.65  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=29.7

Q ss_pred             CeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++|+|||+ |..|..+|..|...+...+|+++|+..
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~   36 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK   36 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence            68999998 999999999999886334699999843

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.59  E-value=0.16  Score=49.06  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      |+|.|||.|..|+..|..|.+.|  ++|+++|+++.
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~   34 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQE   34 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHH
Confidence            47999999999999999999987  89999998755

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.51  E-value=0.077  Score=42.69  Aligned_cols=34  Identities=35%  Similarity=0.556  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .++|+|+|.|.+|.++|..|++                    .|+.+++++...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~--------------------~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLAR--------------------SGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHH--------------------HTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHH--------------------hCCCceeecCCc
Confidence            4799999999999999999996                    799899999776

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02268 probable polyamine oxidase

Probab=93.48  E-value=0.092  Score=50.90  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHcc
Q 019876          160 DTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .+|+|||+|.+|+-+|..|.+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~   21 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHD   21 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHh
Confidence            379999999999999999986

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.45  E-value=0.098  Score=44.57  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=27.5

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      +|+|||||..|+.+|..|++                    .+. +|+++++.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~--------------------~~~-~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR--------------------PGA-KVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--------------------TTS-EEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhc--------------------CCC-eEEEEeccc
Confidence            58999999999999999996                    566 599997655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=93.44  E-value=0.11  Score=49.96  Aligned_cols=38  Identities=24%  Similarity=0.370  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ...+|||||+|.+|+-+|..|..                    +|..+|+|++.++++
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle--------------------~gf~~~~IlEa~dRI   57 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLE--------------------NGFIDVLILEASDRI   57 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHH--------------------hCCceEEEEEecccc
Confidence            45689999999999999999885                    677889999888765

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.41  E-value=0.29  Score=44.35  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=31.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...+|+|||+|..|..+|..|.+.| =.+++|+|...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCE
Confidence            3579999999999999999999997 35899999764

>PRK07233 hypothetical protein; Provisional

Probab=93.40  E-value=0.095  Score=50.45  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=28.3

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      +|+|||+|.+|+-+|..|++                    .|. +|+|++++++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~--------------------~G~-~v~vlE~~~~   33 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAK--------------------RGH-EVTVFEADDQ   33 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEEeCCC
Confidence            58999999999999999996                    564 5999988863

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=93.30  E-value=0.1  Score=55.19  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=27.8

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEEEee
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA  313 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~  313 (334)
                      ++||.|+++..|.+|.  ++++|++++|++.+..
T Consensus       652 eEGV~f~~~~~P~~i~--~d~~g~v~~l~~~~~~  683 (1028)
T PRK06567        652 ALGVDFKENMQPLRIN--VDKYGHVESVEFENRN  683 (1028)
T ss_pred             HcCcEEEecCCcEEEE--ecCCCeEEEEEEEEEe
Confidence            5899999999999998  5346899999999865

>PRK08163 salicylate hydroxylase; Provisional

Probab=93.29  E-value=0.13  Score=49.04  Aligned_cols=36  Identities=31%  Similarity=0.401  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..+|+|||||..|+-+|..|++                    .|. +|+|++|++.+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~--------------------~g~-~v~v~Er~~~~   39 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALAR--------------------QGI-KVKLLEQAAEI   39 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHh--------------------CCC-cEEEEeeCccc
Confidence            4689999999999999999996                    676 59999998654

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=93.28  E-value=0.13  Score=48.80  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=30.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~   53 (334)
                      ..++|+|+||||+|.+.|..|....  ...++.|+|..
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            3689999999999999999998543  25899999987

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.27  E-value=0.13  Score=44.64  Aligned_cols=50  Identities=22%  Similarity=0.291  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV  235 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~  235 (334)
                      .+++|+|||||.+|...+..|..                    .|+ +|+++.+.       ..+++.++.....+.+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~--------------------~ga-~V~VIs~~-------~~~~l~~l~~~~~i~~   58 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLK--------------------YGA-HIVVISPE-------LTENLVKLVEEGKIRW   58 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEcCC-------CCHHHHHHHhCCCEEE
Confidence            68999999999999999998886                    575 69999653       1234445544444544

>PRK06184 hypothetical protein; Provisional

Probab=93.23  E-value=0.16  Score=50.38  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -.|+|||+|.+|+-+|..|++                    .|. +|+|+++++..
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~--------------------~Gi-~v~viE~~~~~   38 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELAR--------------------RGV-SFRLIEKAPEP   38 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCC
Confidence            479999999999999999997                    787 49999998644

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=93.21  E-value=0.63  Score=46.88  Aligned_cols=28  Identities=18%  Similarity=0.139  Sum_probs=22.8

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                      +.||++++++.++++.  . ++|++.+|...
T Consensus       141 ~~gv~i~~~~~v~~L~--~-~~g~v~Gv~~~  168 (566)
T TIGR01812       141 KLGVSFFNEYFALDLI--H-DDGRVRGVVAY  168 (566)
T ss_pred             HcCCEEEeccEEEEEE--E-eCCEEEEEEEE
Confidence            4589999999999997  4 36889888764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05868 hypothetical protein; Validated

Probab=93.17  E-value=0.12  Score=49.22  Aligned_cols=35  Identities=26%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ++|+|||||..|+-+|..|++                    .|. +|+|+++++.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~--------------------~G~-~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGR--------------------HGY-SVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEcCCCCC
Confidence            579999999999999999986                    676 59999988654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.14  E-value=0.49  Score=38.31  Aligned_cols=33  Identities=27%  Similarity=0.289  Sum_probs=29.1

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +|+|||+|..|...|..|.+.| -.+++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCC
Confidence            5899999999999999999998 23899999763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.08  E-value=0.13  Score=50.86  Aligned_cols=35  Identities=31%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .+.+|+|+|+|++|+.++..++..|  .+|+++|.++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~  198 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRP  198 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence            4689999999999999999999998  7899998764

>PRK13984 putative oxidoreductase; Provisional

Probab=92.92  E-value=0.19  Score=51.06  Aligned_cols=63  Identities=14%  Similarity=0.177  Sum_probs=44.9

Q ss_pred             CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------c--CCCH---HHH
Q 019876          157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------A--ACTA---KEL  224 (334)
Q Consensus       157 ~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~--~~~~---~~~  224 (334)
                      ..+++|+|||+|..|+.+|..|.+                    .|. +|+|+++.+...       .  ....   ...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~--------------------~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~  339 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLAT--------------------MGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKD  339 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHH
Confidence            468899999999999999999996                    675 699998876431       0  1112   122


Q ss_pred             HHHHcCCceEEEEccC
Q 019876          225 REILGIKNLYVHIRED  240 (334)
Q Consensus       225 ~~~l~~~gv~~~~~~~  240 (334)
                      .+.++..|++++++..
T Consensus       340 ~~~~~~~gv~~~~~~~  355 (604)
T PRK13984        340 IAFIEALGVKIHLNTR  355 (604)
T ss_pred             HHHHHHCCcEEECCCE
Confidence            3456677899887654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=92.89  E-value=0.12  Score=44.21  Aligned_cols=33  Identities=33%  Similarity=0.461  Sum_probs=24.5

Q ss_pred             EEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       163 vVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|||+|..|+-+|..|.+                    .|..+|+|++|.+.+
T Consensus         1 ~IIGaG~aGl~~a~~l~~--------------------~g~~~v~v~e~~~~~   33 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLE--------------------RGIDPVVVLERNDRP   33 (203)
T ss_dssp             EEE--SHHHHHHHHHHHH--------------------TT---EEEEESSSSS
T ss_pred             CEECcCHHHHHHHHHHHh--------------------CCCCcEEEEeCCCCC
Confidence            699999999999999986                    687669999998543

...

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.88  E-value=0.17  Score=50.85  Aligned_cols=74  Identities=15%  Similarity=0.126  Sum_probs=50.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS   98 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~   98 (334)
                      ..+++|+|.|..|...|..|.+.+  .+++++|+++.                  ..+.    +++.+..++.+...+.+
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~------------------~~~~----~~~~g~~~i~GD~~~~~  472 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRT------------------RVDE----LRERGIRAVLGNAANEE  472 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHH------------------HHHH----HHHCCCeEEEcCCCCHH
Confidence            368999999999999999999987  89999998631                  1111    23346666555332211


Q ss_pred             Eeccc-ceeccCeEEEeccC
Q 019876           99 VSLSE-LRQLYHVVVLAYGA  117 (334)
Q Consensus        99 v~~~~-~~~~yd~lIlATGs  117 (334)
                      + +++ +-.++|.++++++.
T Consensus       473 ~-L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        473 I-MQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             H-HHhcCccccCEEEEEcCC
Confidence            1 122 22378999999986

>PRK06753 hypothetical protein; Provisional

Probab=92.87  E-value=0.14  Score=48.46  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=29.9

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|+|||||.+|+-+|..|++                    .|. +|+|++|++.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQE--------------------QGH-EVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCcc
Confidence            69999999999999999996                    676 59999998754

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=92.76  E-value=0.14  Score=49.92  Aligned_cols=36  Identities=25%  Similarity=0.220  Sum_probs=31.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      +||+|+|+|..|+-+|.+|++                    .|. +|||.++++++-
T Consensus         1 ~rVai~GaG~AgL~~a~~La~--------------------~g~-~vt~~ea~~~~G   36 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELAD--------------------AGY-DVTLYEARDRLG   36 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHh--------------------CCC-ceEEEeccCccC
Confidence            589999999999999999997                    676 599999997653

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.74  E-value=0.16  Score=47.01  Aligned_cols=34  Identities=26%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++|.|||+|..|...|..|++.|  ++|+++|+.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHH
Confidence            58999999999999999999997  89999998753

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=92.71  E-value=0.13  Score=50.22  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=19.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHcc
Q 019876          160 DTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ++|+|||||.+|+-+|..|.+
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~   22 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEK   22 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHh
Confidence            579999999999999999986

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=92.70  E-value=0.13  Score=48.88  Aligned_cols=31  Identities=26%  Similarity=0.200  Sum_probs=27.9

Q ss_pred             hHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           29 PAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        29 ~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      .|||+||.+|++.|  .+|+|+|+++.+||.+.
T Consensus         1 iaGL~aA~~L~~~G--~~v~vlEa~~r~GGr~~   31 (450)
T PF01593_consen    1 IAGLAAAYYLAKAG--YDVTVLEASDRVGGRIR   31 (450)
T ss_dssp             HHHHHHHHHHHHTT--TEEEEEESSSSSBTTS-
T ss_pred             ChHHHHHHHHHhCC--CCEEEEEcCCCCCcceE
Confidence            48999999999998  89999999999999764

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.68  E-value=0.16  Score=46.50  Aligned_cols=32  Identities=19%  Similarity=0.404  Sum_probs=29.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |+|+|||+|..|...|..|.+.+  .+|++++++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~   32 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAG--HDVTLVARR   32 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECC
Confidence            57999999999999999999987  899999975

>TIGR00551 nadB L-aspartate oxidase

Probab=92.68  E-value=1  Score=44.45  Aligned_cols=28  Identities=18%  Similarity=0.203  Sum_probs=23.2

Q ss_pred             eEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          281 RELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       281 ~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                      .||++++++.++++.  . +++++.+|.+.+
T Consensus       142 ~gi~i~~~~~v~~l~--~-~~g~v~Gv~~~~  169 (488)
T TIGR00551       142 PNIRIIEGENALDLL--I-ETGRVVGVWVWN  169 (488)
T ss_pred             CCcEEEECeEeeeee--c-cCCEEEEEEEEE
Confidence            689999999999998  4 367888887765

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.66  E-value=0.2  Score=46.48  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|.|||+|..|.++|..|...+.-.+++++|++.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            58999999999999999999886335899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=92.62  E-value=0.14  Score=47.40  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=26.2

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEEEeeeec
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG  316 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~  316 (334)
                      +.|++|++++.+++|.  - +++++++|++.++.+..
T Consensus       159 ~~Gv~i~~~~~V~~i~--~-~~~~v~gv~~~~g~i~a  192 (358)
T PF01266_consen  159 RAGVEIRTGTEVTSID--V-DGGRVTGVRTSDGEIRA  192 (358)
T ss_dssp             HTT-EEEESEEEEEEE--E-ETTEEEEEEETTEEEEE
T ss_pred             Hhhhhccccccccchh--h-ccccccccccccccccc
Confidence            4589999999999998  3 35788889988766554

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=92.60  E-value=0.23  Score=43.65  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=30.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +.++|+|||||..+..=+..|.+.+  .+|+|+.+.
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~   57 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKK   57 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCC
Confidence            5679999999999999999999987  999999865

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=92.59  E-value=0.2  Score=40.83  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=64.5

Q ss_pred             EEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe---EEceE
Q 019876           22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV---TLGSS   98 (334)
Q Consensus        22 vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~---~v~~~   98 (334)
                      |+|+|+|..|...|..|.+.+  .+|+++.+.+                   .   . +.+...++.+....   .+...
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r~~-------------------~---~-~~~~~~g~~~~~~~~~~~~~~~   55 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSRSP-------------------R---L-EAIKEQGLTITGPDGDETVQPP   55 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTT--CEEEEEESHH-------------------H---H-HHHHHHCEEEEETTEEEEEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCC--CceEEEEccc-------------------c---H-HhhhheeEEEEecccceecccc
Confidence            789999999999999999976  9999998752                   0   1 11344466665444   11111


Q ss_pred             Eeccc---ceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876           99 VSLSE---LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA  175 (334)
Q Consensus        99 v~~~~---~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A  175 (334)
                      .....   ....||.||+|+=+. ...               +.+..+...         +.....|+++-+|.-..|..
T Consensus        56 ~~~~~~~~~~~~~D~viv~vKa~-~~~---------------~~l~~l~~~---------~~~~t~iv~~qNG~g~~~~l  110 (151)
T PF02558_consen   56 IVISAPSADAGPYDLVIVAVKAY-QLE---------------QALQSLKPY---------LDPNTTIVSLQNGMGNEEVL  110 (151)
T ss_dssp             EEESSHGHHHSTESEEEE-SSGG-GHH---------------HHHHHHCTG---------EETTEEEEEESSSSSHHHHH
T ss_pred             cccCcchhccCCCcEEEEEeccc-chH---------------HHHHHHhhc---------cCCCcEEEEEeCCCCcHHHH
Confidence            11111   234799999999773 111               122222211         11345799999997777666


Q ss_pred             HHHc
Q 019876          176 RILL  179 (334)
Q Consensus       176 ~~L~  179 (334)
                      ....
T Consensus       111 ~~~~  114 (151)
T PF02558_consen  111 AEYF  114 (151)
T ss_dssp             HCHS
T ss_pred             HHHc
Confidence            5443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=92.53  E-value=0.16  Score=49.55  Aligned_cols=21  Identities=33%  Similarity=0.384  Sum_probs=19.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHcc
Q 019876          160 DTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ++|+|||||.+|+-+|..|.+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~   23 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEK   23 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHh
Confidence            579999999999999999986

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02697 lycopene epsilon cyclase

Probab=92.52  E-value=0.81  Score=45.67  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=29.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      -.|+|||+|..|+-+|..|++                    .|. +|.++++..++.
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak--------------------~Gl-~V~LIe~~~p~~  144 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAK--------------------LGL-NVGLIGPDLPFT  144 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEecCcccCC
Confidence            479999999999999999986                    566 599998765443

>PRK06175 L-aspartate oxidase; Provisional

Probab=92.52  E-value=0.72  Score=44.84  Aligned_cols=28  Identities=4%  Similarity=0.007  Sum_probs=22.0

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                      ..||+|++++.++.|+  . +++++.+|...
T Consensus       141 ~~gV~i~~~t~v~~Li--~-~~~~v~Gv~~~  168 (433)
T PRK06175        141 RKNITIIENCYLVDII--E-NDNTCIGAICL  168 (433)
T ss_pred             cCCCEEEECcEeeeeE--e-cCCEEEEEEEE
Confidence            4589999999999987  4 35788887653

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.48  E-value=0.2  Score=45.87  Aligned_cols=35  Identities=31%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|.|||+|..|...|..++..|  ++|+++|..+.
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~   39 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEE   39 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHH
Confidence            358999999999999999999987  99999998754

>PRK07208 hypothetical protein; Provisional

Probab=92.44  E-value=0.17  Score=49.69  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=28.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .++|+|||||.+|+-+|..|.+                    .|. +|+|+++++
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~--------------------~g~-~v~v~E~~~   37 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLK--------------------RGY-PVTVLEADP   37 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEecCC
Confidence            4689999999999999999996                    465 488888764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=92.38  E-value=0.19  Score=45.57  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      ...+|+|||.|.+|.++|..|++                    .|+.+++|+...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar--------------------~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALAR--------------------TGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH--------------------cCCCEEEEEeCC
Confidence            56899999999999999999997                    788899999876

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.36  E-value=0.21  Score=47.54  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=30.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ...+|+|||+|.+|..+|..+.+.|  .+|++++++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~  199 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDIN  199 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECC
Confidence            3568999999999999999999997  899999975

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07588 hypothetical protein; Provisional

Probab=92.35  E-value=0.17  Score=48.20  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=29.7

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|+|||||.+|+-+|..|++                    .|. +|+|+++++..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRR--------------------YGH-EPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHH--------------------CCC-ceEEEeCCCCc
Confidence            69999999999999999996                    676 59999988654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.33  E-value=0.19  Score=46.49  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .|+|+|||+|..|...|.+|.+.|  .+|+++.+.
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEec
Confidence            468999999999999999999987  899999885

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=92.28  E-value=0.27  Score=45.59  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +++||+|||+|..|.++|..|...+-..++.|+|...
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4579999999999999999998876456899999764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=92.21  E-value=0.6  Score=41.17  Aligned_cols=97  Identities=16%  Similarity=0.165  Sum_probs=0.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC----CCCcccccccc-CCCCcchhHHHHHHHHHhhcCCcEEEeC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL----PTPFGLVRSGV-APDHPETKIVINQFSRVVQHERCSFFGN   92 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~----~~~gg~~~~~~-~p~~~~~~~~~~~~~~~~~~~~i~~~~~   92 (334)
                      ...+|+|||+|..|..+|..|.+.| -.+++|+|.+    ..++....+.. --+....+.+.+.+.+......++.+..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc


Q ss_pred             eEEceEEecccceeccCeEEEeccC
Q 019876           93 VTLGSSVSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        93 ~~v~~~v~~~~~~~~yd~lIlATGs  117 (334)
                      ..  ..-...+.-..+|.||.|+..
T Consensus        99 ~i--~~~~~~~~~~~~DvVi~~~d~  121 (228)
T cd00757          99 RL--DAENAEELIAGYDLVLDCTDN  121 (228)
T ss_pred             ee--CHHHHHHHHhCCCEEEEcCCC

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=92.21  E-value=0.17  Score=47.93  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=27.8

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|+|||||.+|+-+|..|++                    .|. +|+|+++.+
T Consensus         2 dvvIIGaGi~G~s~A~~La~--------------------~g~-~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAK--------------------HGK-KTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccC
Confidence            58999999999999999996                    565 699999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02028 ChlP geranylgeranyl reductase

Probab=92.20  E-value=0.21  Score=48.03  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=29.5

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|+|||||..|+-+|..|++                    .|. +|.+++++...
T Consensus         2 ~VvIVGaGPAG~~aA~~la~--------------------~G~-~V~llE~~~~~   35 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLAS--------------------AGI-QTFLLERKPDN   35 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHh--------------------CCC-cEEEEecCCCC
Confidence            69999999999999999996                    676 59999987543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=92.18  E-value=0.17  Score=47.83  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|+|||||.+|+-+|..|++                    .|. +|+|++|..
T Consensus         5 dv~IIGgGi~G~s~A~~L~~--------------------~g~-~V~lie~~~   36 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLAR--------------------RGL-RVLGLDRFM   36 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccc
Confidence            59999999999999999996                    564 699999875

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.17  E-value=0.079  Score=51.82  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=34.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..+|+|||||..|..||.-+..+|  +++.++|+++...|
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRG--LktaLVE~~DF~SG  104 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRG--LKTALVEAGDFASG  104 (680)
T ss_pred             cccEEEECCCccCcceeehhhccc--ceeEEEecccccCC
Confidence            489999999999999999999997  99999999976544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	334
1cjc_A	460	Structure Of Adrenodoxin Reductase Of Mitochondrial		4e-71
1lqt_A	456	A Covalent Modification Of Nadp+ Revealed By The At		2e-57
2c7g_A	456	Fpra From Mycobacterium Tuberculosis: His57gln Muta		1e-56

>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450 Systems Length = 460

Iteration: 1
 Score =  264 bits (675), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 151/318 (47%), Positives = 196/318 (61%), Gaps = 10/318 (3%)
Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPDHPE K VIN F++
Sbjct: 8   QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 67
Query: 81  VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
             + +RC+F+GNV +G  V++ EL+  YH VVL+YGAE  +AL IPGE+L GV SAR FV
Sbjct: 68  TARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFV 127
Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
            WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L  TDI   A  AL  
Sbjct: 128 GWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 186
Query: 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260
           S ++ V++VGRRGP+Q A T KELRE++ +      +   D +     +   + +R ++R
Sbjct: 187 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--LQDRIKEAARPRKR 244
Query: 261 VYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315
           + ELL              +     R     FFR P   L S +     +G+    T L+
Sbjct: 245 LMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTRLE 303
Query: 316 GGGPGKQYAVGTGEFEDL 333
           G G   + AV TG+ EDL
Sbjct: 304 GIGEATR-AVPTGDVEDL 320

>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic Resolution Structure Of Fpra, A Mycobacterium Tuberculosis Oxidoreductase Length = 456

Iteration: 1
 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/320 (41%), Positives = 181/320 (56%), Gaps = 14/320 (4%)
Query: 19  PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKI 73
           P  + +VGSGP+ F+ A   LKA    +     VD+++ LPTP+GLVRSGVAPDHP+ K 
Sbjct: 3   PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 62
Query: 74  VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
           +  QF +  +  R  FFGNV +G  V   EL + Y  V+ A GA+SDR L IPGEDL G 
Sbjct: 63  ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
            +A +FV WYN HP  + +SPDL S   AV++G GNVALDVARILL   + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
           A  +L    I++V +VGRRGP+QAA T  ELRE+  +  + V I   +L    TDE+   
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL-DGITDEDAAA 240
Query: 254 NSRIQRRVYELLXXXXXXXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
             ++ ++  ++L         +P  G R + F F   P       +    V  +   +  
Sbjct: 241 VGKVCKQNIKVL---RGYADREPRPGHRRMVFRFLTSPIEIKGKRK----VERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDL 333
           L   G G+  A  TGE E+L
Sbjct: 294 LVSDGSGRVAAKDTGEREEL 313

>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant Length = 456

Iteration: 1
 Score =  216 bits (550), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/320 (41%), Positives = 182/320 (56%), Gaps = 14/320 (4%)
Query: 19  PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKI 73
           P  + +VGSGP+ F+ A   LKA    +     VD+++ LPTP+GLVRSGVAPD P+ K 
Sbjct: 3   PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDQPKIKS 62
Query: 74  VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
           +  QF +  +  R  FFGNV +G  V   EL + Y  V+ A GA+SDR L IPGEDL G 
Sbjct: 63  ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
            +A +FV WYN HP  + +SPDL S   AV++G GNVALDVARILL   + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
           A  +L    I++V +VGRRGP+QAA T  ELRE+  +  + V I   +L    TDE+   
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL-DGITDEDAAA 240
Query: 254 NSRIQRRVYELLXXXXXXXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
             ++ ++  ++L         +P  G R + F F   P   +E   +   V  +   +  
Sbjct: 241 VGKVCKQNIKVL---RGYADREPRPGHRRMVFRFLTSP---IEIKGKR-KVERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDL 333
           L   G G+  A  TGE E+L
Sbjct: 294 LVSDGSGRVAAKDTGEREEL 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	1e-121
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	1e-121
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	1e-19
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	4e-16
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	8e-08
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	8e-06

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score =  356 bits (914), Expect = e-121
 Identities = 133/321 (41%), Positives = 180/321 (56%), Gaps = 14/321 (4%)

Query: 19  PLRVCVVGSGPAGFYTAEKTLKAHQEA-----QVDIIDRLPTPFGLVRSGVAPDHPETKI 73
           P  + +VGSGP+ F+ A   LKA          VD+++ LPTP+GLVRSGVAPDHP+ K 
Sbjct: 3   PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 62

Query: 74  VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
           +  QF +  +  R  FFGNV +G  V   EL + Y  V+ A GA+SDR L IPGEDL G 
Sbjct: 63  ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122

Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
            +A +FV WYN HP  + +SPDL S   AV++G GNVALDVARILL   + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181

Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
           A  +L    I++V +VGRRGP+QAA T  ELRE+  +  + V I   + +   TDE+   
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAE-LDGITDEDAAA 240

Query: 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
             ++ ++  ++L   A     +P  G R + F F   P            V  +   +  
Sbjct: 241 VGKVCKQNIKVLRGYAD---REPRPGHRRMVFRFLTSPIEIKG----KRKVERIVLGRNE 293

Query: 314 LKGGGPGKQYAVGTGEFEDLD 334
           L   G G+  A  TGE E+L 
Sbjct: 294 LVSDGSGRVAAKDTGEREELP 314

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460

 Score =  354 bits (911), Expect = e-121
 Identities = 152/324 (46%), Positives = 199/324 (61%), Gaps = 10/324 (3%)

Query: 16  SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVI 75
                ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPDHPE K VI
Sbjct: 3   QEQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVI 62

Query: 76  NQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135
           N F++  + +RC+F+GNV +G  V++ EL+  YH VVL+YGAE  +AL IPGE+L GV S
Sbjct: 63  NTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFS 122

Query: 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195
           AR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L  TDI   A 
Sbjct: 123 ARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAAL 181

Query: 196 TALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255
            AL  S ++ V++VGRRGP+Q A T KELRE++ +      +   D       +   + +
Sbjct: 182 GALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADF--LGLQDRIKEAA 239

Query: 256 RIQRRVYELLSKAAAS-----ASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310
           R ++R+ ELL + A        +++     R     FFR P   L S +     +G+   
Sbjct: 240 RPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDG-RRAAGIRLA 298

Query: 311 KTALKGGGPGKQYAVGTGEFEDLD 334
            T L+G G   + AV TG+ EDL 
Sbjct: 299 VTRLEGIGEATR-AVPTGDVEDLP 321

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 88.3 bits (220), Expect = 1e-19
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 21  RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
            V V+G+GPAG   AE+     ++   V + DR     GL+  G+ P     K V+ +  
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGYE---VHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRV 179

Query: 80  RVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF 139
           +++      +  N  +G   SL ELR+ +  V++A G    R +  PG  L  + +A ++
Sbjct: 180 KLLADAGVIYHPNFEVGRDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDY 239

Query: 140 VWWYNGHPDGKNLSPDLKSTDTA-----VILGQGNVALDVARILLR 180
           +   N    G  +      +  A     V+LG G+ A+D  R  +R
Sbjct: 240 LTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIR 285

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 78.3 bits (193), Expect = 4e-16
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 25/175 (14%)

Query: 21  RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
           ++ ++G+GPA    A    +  + +  + I ++     GL  S +    P+ ++  +   
Sbjct: 189 KIALLGAGPASISCASFLARLGYSD--ITIFEKQEYVGGLSTSEI----PQFRLPYD--- 239

Query: 80  RVVQHERCS-------FFGNVTLG-SSVSLSELR-QLYHVVVLAYGAESDRALGIPG--E 128
            VV  E               +L  + ++L+ L+ + Y    +  G    +   I     
Sbjct: 240 -VVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLT 298

Query: 129 DLIGVHSAREF---VWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
              G +++++F   V   +        SP        ++LG G+ A D A   LR
Sbjct: 299 QDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALR 353

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 29/170 (17%)

Query: 17  SNPLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPTPFGLVR-SGVAPDHPETKI 73
                + VVG+GPAG   A     A  H   QV + D      G    +   P   E   
Sbjct: 371 VQKKNLAVVGAGPAGLAFA-INAAARGH---QVTLFDAHSEIGGQFNIAKQIPGKEEFYE 426

Query: 74  VINQFSRVVQHERCSFFGNVT--LGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
            +  + R+++         VT  L  +V+  +L+  +   +LA G    R   I G D  
Sbjct: 427 TLRYYRRMIEVT------GVTLKLNHTVTADQLQA-FDETILASGIVP-RTPPIDGIDHP 478

Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
            V S  + +   +  P G              I+G G +  D A  L +P
Sbjct: 479 KVLSYLDVL--RDKAPVGNK----------VAIIGCGGIGFDTAMYLSQP 516

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 50/216 (23%)

Query: 18  NPLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVI 75
           +  RV VVG+GP+G   A + L    +    V + +      G V    A          
Sbjct: 390 SDARVLVVGAGPSGLEAA-RALGVRGY---DVVLAEAGRDLGGRVTQESALPGLS----- 440

Query: 76  NQFSRVVQH--ERCSFFGNVT--LGSSVSLSELRQL-YHVVVLAYGA-------ESDRAL 123
             + RV ++     +   NV     S ++  ++ +  +  V+ A GA             
Sbjct: 441 -AWGRVKEYREAVLAELPNVEIYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTT 499

Query: 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN--VALDVARILLRP 181
            +P  + + V    +              +  L      V+    +  +   VA      
Sbjct: 500 ALPIAEGMQVLGPDDL------------FAGRLPDGKKVVVYDDDHYYLGGVVA------ 541

Query: 182 TEELA-----TTDIASYAWTALEGSSIRKVYLVGRR 212
            E LA      + +   A  +   ++  +V  + RR
Sbjct: 542 -ELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRR 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	100.0
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.97
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.92
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.9
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.9
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.89
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.89
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.89
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.88
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.88
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.88
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.88
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.88
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.88
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.88
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.87
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.87
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.87
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.87
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.87
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.87
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.86
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.86
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.86
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.86
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.86
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.86
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.86
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.86
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.86
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.86
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.86
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.86
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.86
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.86
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.86
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.86
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.86
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.86
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.85
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.85
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.85
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.85
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.85
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.85
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.85
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.85
4dna_A	463	Probable glutathione reductase; structural genomic	99.85
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.84
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.84
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.84
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.84
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.84
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.84
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.84
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.84
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.84
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.84
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.84
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.84
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.84
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.83
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.83
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.83
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.83
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.83
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.83
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.83
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.83
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.82
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.82
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.82
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.82
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.82
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.81
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.81
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.81
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.81
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.8
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.79
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.79
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.79
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.79
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.74
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.72
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.72
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.68
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.67
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.66
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.65
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.62
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.57
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.29
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.12
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.0
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.0
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.79
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.76
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.75
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.74
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.73
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.66
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.61
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.57
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.55
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.54
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.5
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.5
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.47
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.46
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.46
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.45
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.42
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.4
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.4
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.39
3dme_A	369	Conserved exported protein; structural genomics, P	98.39
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.38
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.36
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.36
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.35
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.35
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.34
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.34
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.33
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.33
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.32
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.32
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.31
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.31
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.31
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.31
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.31
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.3
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.3
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.29
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.29
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.28
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.28
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.28
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.27
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.26
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.26
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.25
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.24
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.23
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.23
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.22
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.22
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.22
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.21
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.2
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.2
3atr_A	453	Conserved archaeal protein; saturating double bond	98.2
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.2
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.2
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.19
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.18
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.17
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.17
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.17
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.16
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.16
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.16
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.15
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.14
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.14
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.13
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.12
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.12
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.11
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.11
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.09
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.08
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.08
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.08
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.08
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.06
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.06
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.06
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.05
4dna_A	463	Probable glutathione reductase; structural genomic	98.04
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.04
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.04
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.03
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.02
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.02
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.01
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.99
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	97.98
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.98
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.97
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.96
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.95
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.94
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.94
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.93
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.93
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.92
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.91
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.91
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.91
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.91
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.9
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.89
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.89
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.88
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.87
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.87
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.86
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.85
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.85
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.84
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.81
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.81
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.8
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.78
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.78
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.76
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.74
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.73
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.68
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.67
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.66
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.66
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.65
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	97.64
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.63
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.62
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.62
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.61
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.61
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.61
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.6
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.6
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.57
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.56
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.55
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.51
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.5
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.5
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.5
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.48
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.47
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.45
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.43
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.4
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.39
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.38
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.38
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.35
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.32
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.31
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.31
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.31
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.3
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.29
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.27
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.27
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.25
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.25
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.23
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.22
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.2
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.18
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.18
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.18
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.18
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.16
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.15
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.14
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.12
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.11
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.1
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.06
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.06
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.05
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.04
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.03
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.0
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.98
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.97
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.95
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	96.93
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.92
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.89
2cul_A	232	Glucose-inhibited division protein A-related PROT	96.88
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.86
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.8
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.78
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.7
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.67
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.62
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	96.61
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.58
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.57
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.57
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.57
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.57
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.56
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.55
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	96.42
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.36
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.36
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.34
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.28
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	96.21
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	96.19
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	96.18
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.16
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.14
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.08
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	96.05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	96.05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	96.03
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	95.99
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.97
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.94
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	95.9
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	95.89
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	95.87
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.78
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.74
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	95.69
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.61
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.48
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.46
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	95.41
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	95.4
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	95.19
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.15
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.15
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.08
4fk1_A	304	Putative thioredoxin reductase; structural genomic	95.04
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.04
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.02
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	94.86
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.85
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	94.84
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.75
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.72
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.72
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.7
4hb9_A	412	Similarities with probable monooxygenase; flavin,	94.67
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.47
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.46
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.27
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.24
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.19
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	94.15
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	94.01
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	94.0
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	94.0
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.79
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.78
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	93.77
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.73
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	93.72
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	93.7
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.6
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	93.58
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	93.5
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.5
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	93.46
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	93.43
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	93.43
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	93.42
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.41
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	93.41
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	93.41
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.38
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	93.32
3dme_A	369	Conserved exported protein; structural genomics, P	93.28
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.19
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.17
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	93.15
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	93.14
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.13
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.12
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.08
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	93.05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.0
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.95
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.91
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	92.9
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.89
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.89
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	92.88
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.81
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.79
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	92.76
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	92.69
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.64
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.6
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.59
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	92.54
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.53
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.51
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	92.5
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.46
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	92.4
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	92.38
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	92.38
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.37
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.35
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	92.33
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	92.24
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	92.23
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.2
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	92.17
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	92.15
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.12
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.09
3atr_A	453	Conserved archaeal protein; saturating double bond	92.07
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	91.91
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	91.89
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.89
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.88
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	91.88
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	91.85
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	91.83
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	91.82
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	91.79
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.79
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	91.77
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.69
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	91.62
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	91.56
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.52
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.52
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.51
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.48
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	91.45
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.45
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	91.42
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.35
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	91.32
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.29
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	91.29
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.25
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	91.23
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	91.22
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.21
3tl2_A	315	Malate dehydrogenase; center for structural genomi	91.17
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.13
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	91.12
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	91.11
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	91.06
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.06
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.0
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	91.0
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	90.97
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	90.96
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.95
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.88
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.85
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.84
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	90.79
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	90.79
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	90.77
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	90.76
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.75
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	90.75
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.72
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.7
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	90.67
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	90.66
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	90.65
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	90.61
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	90.6
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	90.54
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.48
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	90.46
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.46
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.44
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	90.44
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	90.41
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	90.39
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	90.36
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	90.36
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	90.36
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	90.33
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	90.32
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	90.27
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	90.26
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	90.25
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	90.24
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	90.24
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	90.22
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	90.21
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	90.16
3qha_A	296	Putative oxidoreductase; seattle structural genomi	90.13
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	90.11
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.1
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	90.06
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	90.04
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	90.04

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=100.00  E-value=1.4e-38  Score=308.60  Aligned_cols=306  Identities=48%  Similarity=0.809  Sum_probs=245.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++|+||||||||+++|..|++.+++.+|+|||+++.+||++++++.|+++..+++..++.+++++.+++++.++.++.
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~   84 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR   84 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEee
Confidence            46799999999999999999999877799999999999999999999888877788888888899999999999988766


Q ss_pred             EEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHH
Q 019876           98 SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI  177 (334)
Q Consensus        98 ~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~  177 (334)
                      ++++.+....||+||||||+..++.|++||.+.+++++++++..+++..+++......+ .+++|+|||+|++|+|+|..
T Consensus        85 ~V~~~~~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~-~~~~vvVIGgG~~g~e~A~~  163 (460)
T 1cjc_A           85 DVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARI  163 (460)
T ss_dssp             TBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCT-TSSEEEEESCSHHHHHHHHH
T ss_pred             EEEeccceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCC-CCCEEEEECCCHHHHHHHHH
Confidence            66666555689999999999535888999998899999999998888776665443334 68999999999999999999


Q ss_pred             HccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHH
Q 019876          178 LLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI  257 (334)
Q Consensus       178 L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~  257 (334)
                      |++..+++..|||++++++.+++.++++|+|++|++++...|+.+++++++..+++++.+++.+++.  ........++.
T Consensus       164 L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~--~~~~~~~~~~~  241 (460)
T 1cjc_A          164 LLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--LQDRIKEAARP  241 (460)
T ss_dssp             HHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTT--HHHHTTTSCHH
T ss_pred             HhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcc--hhhhhhhccHH
Confidence            9999999999999999999999999988999999999999999999999988999999988877642  11111124566


Q ss_pred             HHHHHHHHHHHHhcc-C--C--CCCCCceEEEEEeccccceeeccccCCC-CeeEEEEEEeeeecCCCCcceeecCCc
Q 019876          258 QRRVYELLSKAAASA-S--S--QPMLGQRELHFVFFRKPDSFLESNERSG-HVSGVHFEKTALKGGGPGKQYAVGTGE  329 (334)
Q Consensus       258 ~~~~~~~~~~~~~~~-~--~--~~~~~~~gv~~~~~~~~~~i~~~~~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~  329 (334)
                      .+++.++|++.+.+. +  .  ......+||+|+++++|++|.  +++++ ++++|++.++.+..+ +|+..++++|+
T Consensus       242 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~--~~~~~~~v~~v~~~~~~l~~~-~~~~~~~~~g~  316 (460)
T 1cjc_A          242 RKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVL--PSPDGRRAAGIRLAVTRLEGI-GEATRAVPTGD  316 (460)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEE--ECTTSSSEEEEEEEEEEEESS-GGGCEEEEEEE
T ss_pred             HHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEE--cCCCCceEEEEEEEEEEEccc-cCCCcccCCCc
Confidence            677777777665300 0  0  000123899999999999998  52126 899999987766432 23333444554

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=100.00  E-value=9.5e-39  Score=309.41  Aligned_cols=302  Identities=43%  Similarity=0.683  Sum_probs=247.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhh-cCC----CCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLK-AHQ----EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~-~~~----~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      +++|+||||||||++||.+|++ ..+    +.+|+|||+.+.+||.++|++.|++...+++..++.+++++.+++++.++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            5799999999999999999999 722    39999999998999999999989888888888888888999999999887


Q ss_pred             EEceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCC-CCCCCCCCCCCeEEEEcCCHHHH
Q 019876           94 TLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNLSPDLKSTDTAVILGQGNVAL  172 (334)
Q Consensus        94 ~v~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~k~vvVIG~G~~g~  172 (334)
                      .++.+++++++...||+||||||+..|+.+++||.+.++++++.++..+++.++++ ..+. .+ .+++|+|||+|++|+
T Consensus        83 ~v~~~v~~~~~~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~-~~-~~~~vvVIG~G~~g~  160 (456)
T 1lqt_A           83 VVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSP-DL-SGARAVVIGNGNVAL  160 (456)
T ss_dssp             CBTTTBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC-CC-CSSEEEEECCSHHHH
T ss_pred             EECCEEEECCCeEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchh-hc-CCCEEEEECCCHHHH
Confidence            76655666666678999999999944788899999888999999999888877655 2222 23 689999999999999


Q ss_pred             HHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhh
Q 019876          173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM  252 (334)
Q Consensus       173 e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~  252 (334)
                      |+|..|++...++..||+++++++.|++.++++|++++|+++++..|+.+++++++..+++++++++.+++ ........
T Consensus       161 e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~-~~~~~~~~  239 (456)
T 1lqt_A          161 DVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELD-GITDEDAA  239 (456)
T ss_dssp             HHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGT-TCCHHHHH
T ss_pred             HHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhc-cchhhhhh
Confidence            99999999888889999999999999999988999999999999999999999999999999999888774 22221122


Q ss_pred             hccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeecCCCCcceeecCCce
Q 019876          253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEF  330 (334)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~  330 (334)
                      ..++..++..++|++.+..   ......+||+|+++++|++|.  +  ++++++|++.++++..+..|+..++.+|+.
T Consensus       240 ~~~~~~~~~~~~l~~~~~~---~~~~~~~gv~i~~~~~~~~i~--~--~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~  310 (456)
T 1lqt_A          240 AVGKVCKQNIKVLRGYADR---EPRPGHRRMVFRFLTSPIEIK--G--KRKVERIVLGRNELVSDGSGRVAAKDTGER  310 (456)
T ss_dssp             HHCHHHHHHHHHHHHHHTC---C-CTTSEEEEEECSEEEEEEE--C--SSSCCEEEEEEEEEEECSSSSEEEEEEEEE
T ss_pred             hccHHHHHHHHHHHHHhhc---CCCCCCceEEEEeCCCCeEEe--c--CCcEeEEEEEEEEecCCCcccccccCCCce
Confidence            3456667777777776531   000122899999999999998  6  478999999988776665555556666654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.97  E-value=6.4e-31  Score=254.34  Aligned_cols=237  Identities=25%  Similarity=0.341  Sum_probs=181.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++|+||||||||+++|.+|++.+  ++|+|||+.+.+||++.|++ |.+..++++..+..+++++.|++|+.++.++
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  196 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKG--YEVHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRVKLLADAGVIYHPNFEVG  196 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHHTTCEEETTCCBT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCcEEEeCCEec
Confidence            45789999999999999999999997  89999999999999999987 7777777888888888889999999998887


Q ss_pred             eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcC--CCCCCCCCC---CCCCCCeEEEEcCCHHH
Q 019876           97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG--HPDGKNLSP---DLKSTDTAVILGQGNVA  171 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~--~~~~~~~~~---~~~~~k~vvVIG~G~~g  171 (334)
                      .+++++++...||+||||||+..|+.+++||.+.+++++..+|+...+.  ..+......   ....+++|+|||||++|
T Consensus       197 ~~v~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a  276 (456)
T 2vdc_G          197 RDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTA  276 (456)
T ss_dssp             TTBCHHHHHSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHH
T ss_pred             cEEEhhHhHhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhH
Confidence            6666666667899999999996588889999988999988877653221  101000000   12378999999999999


Q ss_pred             HHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhh
Q 019876          172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE  251 (334)
Q Consensus       172 ~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~  251 (334)
                      +|+|..+.+                    .|+++||+++|++....+....++                           
T Consensus       277 ~d~A~~~~r--------------------~Ga~~Vtiv~r~~~~~~p~~~~e~---------------------------  309 (456)
T 2vdc_G          277 MDCVRTAIR--------------------QGATSVKCLYRRDRKNMPGSQREV---------------------------  309 (456)
T ss_dssp             HHHHHHHHH--------------------TTCSEEEEECSSCSTTCSSCHHHH---------------------------
T ss_pred             HHHHHHHHH--------------------cCCCEEEEEEeCCccCCCCCHHHH---------------------------
Confidence            999999886                    688789999998865222221111                           


Q ss_pred             hhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeee-cCCCCcceeec-CCc
Q 019876          252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGE  329 (334)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~-~~~  329 (334)
                                 +    .+         .+.||+|++++.|++|.  +  ++++++|++.+.++. .+.+|+++|++ +|+
T Consensus       310 -----------~----~~---------~~~Gv~~~~~~~~~~i~--~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~  361 (456)
T 2vdc_G          310 -----------A----HA---------EEEGVEFIWQAAPEGFT--G--DTVVTGVRAVRIHLGVADATGRQTPQVIEGS  361 (456)
T ss_dssp             -----------H----HH---------HHTTCEEECCSSSCCEE--E--EEEEETTEEEEEEEEEEEECTTCCEEEEEEE
T ss_pred             -----------H----HH---------HHCCCEEEeCCCceEEe--C--CCcEEEEEEEEEEecccCCcCCccccccCCc
Confidence                       1    11         14589999999999998  6  578888888876654 24467776665 454


Q ss_pred             eE
Q 019876          330 FE  331 (334)
Q Consensus       330 ~~  331 (334)
                      .+
T Consensus       362 ~~  363 (456)
T 2vdc_G          362 EF  363 (456)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.92  E-value=5.5e-25  Score=231.67  Aligned_cols=226  Identities=22%  Similarity=0.337  Sum_probs=166.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      +.++|+||||||||++||.+|++.|  + +|+|||+.+.+||.+.+++ |.+..++++..+..+++++.|++++.++.++
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G--~~~Vtv~E~~~~~GG~~~~~i-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  262 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLG--YSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLS  262 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcC--CCcEEEEeCCCCCCccccccC-CcccCCHHHHHHHHHHHHHCCcEEEcccEec
Confidence            4679999999999999999999997  7 7999999989999998877 7776667777777788889999999998875


Q ss_pred             e-EEecccce-eccCeEEEeccCCCCCCCCC-CCcc-CCCccchhhHHHHhcCCC--CCCCCCCCC-CCCCeEEEEcCCH
Q 019876           97 S-SVSLSELR-QLYHVVVLAYGAESDRALGI-PGED-LIGVHSAREFVWWYNGHP--DGKNLSPDL-KSTDTAVILGQGN  169 (334)
Q Consensus        97 ~-~v~~~~~~-~~yd~lIlATGs~~p~~~~i-pG~~-~~~v~~~~~~~~~~~~~~--~~~~~~~~~-~~~k~vvVIG~G~  169 (334)
                      . +++++++. ..||+||||||++.|+.+++ +|.+ .+++++..+|+...+...  .+......+ ..+++|+|||||+
T Consensus       263 ~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~  342 (1025)
T 1gte_A          263 ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGD  342 (1025)
T ss_dssp             TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSH
T ss_pred             cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCCh
Confidence            3 45555543 58999999999954777765 4654 578998888876432110  000011111 2367999999999


Q ss_pred             HHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCch
Q 019876          170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE  249 (334)
Q Consensus       170 ~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~  249 (334)
                      +|+|+|..+.+                    .|+++||+++|++....+..+.++                         
T Consensus       343 ~g~e~A~~~~~--------------------~G~~~Vtvv~r~~~~~~~~~~~e~-------------------------  377 (1025)
T 1gte_A          343 TAFDCATSALR--------------------CGARRVFLVFRKGFVNIRAVPEEV-------------------------  377 (1025)
T ss_dssp             HHHHHHHHHHH--------------------TTCSEEEEECSSCGGGCCSCHHHH-------------------------
T ss_pred             HHHHHHHHHHH--------------------cCCCEEEEEEecChhhCCCCHHHH-------------------------
Confidence            99999999986                    787789999999843322222221                         


Q ss_pred             hhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeeeecCCCCcc
Q 019876          250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ  322 (334)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~  322 (334)
                                   +.+             .+.||+|++++.+++|.  + +++++++|++.+.+.  +++|+.
T Consensus       378 -------------~~~-------------~~~Gv~~~~~~~~~~i~--~-~~g~v~~v~~~~~~~--~~~g~~  419 (1025)
T 1gte_A          378 -------------ELA-------------KEEKCEFLPFLSPRKVI--V-KGGRIVAVQFVRTEQ--DETGKW  419 (1025)
T ss_dssp             -------------HHH-------------HHTTCEEECSEEEEEEE--E-ETTEEEEEEEEEEEE--CTTSCE
T ss_pred             -------------HHH-------------HHcCCEEEeCCCceEEE--c-cCCeEEEEEEEEeEE--cCCCCc
Confidence                         111             14589999999999998  5 367899999886553  334543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.90  E-value=3.1e-23  Score=200.40  Aligned_cols=215  Identities=16%  Similarity=0.187  Sum_probs=140.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc----cccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----GLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g----g~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ++|+|||||+||++||..|++.+++.+|+|||+++.+|    +...+ .........++.....+.+.+.+++++.+..+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V   81 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAY-FNHTINELHEARYITEEELRRQKIQLLLNREV   81 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC-----------------CCCCHHHHHHTTEEEECSCEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhh-hcCCCCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence            69999999999999999999996669999999998765    11111 10111111222222345556778998877665


Q ss_pred             c------eEEec----ccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEE
Q 019876           96 G------SSVSL----SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL  165 (334)
Q Consensus        96 ~------~~v~~----~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVI  165 (334)
                      .      ..+.+    +...+.||+||||||+ .|..|++||.+.+++++.+++...       ..+......+++++||
T Consensus        82 ~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~~~v~~~~~~~~~-------~~~~~~~~~~~~vvVi  153 (452)
T 3oc4_A           82 VAMDVENQLIAWTRKEEQQWYSYDKLILATGA-SQFSTQIRGSQTEKLLKYKFLSGA-------LAAVPLLENSQTVAVI  153 (452)
T ss_dssp             EEEETTTTEEEEEETTEEEEEECSEEEECCCC-CBCCCCCBTTTCTTEEEGGGCC-----------CCHHHHTCSEEEEE
T ss_pred             EEEECCCCEEEEEecCceEEEEcCEEEECCCc-ccCCCCCCCCCCCCEEEeCCHHHH-------HHHHHHHhcCCEEEEE
Confidence            3      12322    2234689999999999 699999999988888876543211       1111112357999999


Q ss_pred             cCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCC
Q 019876          166 GQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS  245 (334)
Q Consensus       166 G~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~  245 (334)
                      |+|++|+|+|..|.+                    .|. +|++++|.+.++....++++.                    
T Consensus       154 GgG~~g~E~A~~l~~--------------------~g~-~Vtlv~~~~~~l~~~~d~~~~--------------------  192 (452)
T 3oc4_A          154 GAGPIGMEAIDFLVK--------------------MKK-TVHVFESLENLLPKYFDKEMV--------------------  192 (452)
T ss_dssp             CCSHHHHHHHHHHHH--------------------TTC-EEEEEESSSSSSTTTCCHHHH--------------------
T ss_pred             CCCHHHHHHHHHHHh--------------------CCC-eEEEEEccCccccccCCHHHH--------------------
Confidence            999999999999986                    665 699999998876543222222                    


Q ss_pred             CCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEeee
Q 019876          246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL  314 (334)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~  314 (334)
                                       +.+.+.+.         +.||+|++++.+++|.  . .++++ .|.+.++.+
T Consensus       193 -----------------~~l~~~l~---------~~GV~i~~~~~v~~i~--~-~~~~v-~v~~~~g~i  231 (452)
T 3oc4_A          193 -----------------AEVQKSLE---------KQAVIFHFEETVLGIE--E-TANGI-VLETSEQEI  231 (452)
T ss_dssp             -----------------HHHHHHHH---------TTTEEEEETCCEEEEE--E-CSSCE-EEEESSCEE
T ss_pred             -----------------HHHHHHHH---------HcCCEEEeCCEEEEEE--c-cCCeE-EEEECCCEE
Confidence                             12223332         5689999999999987  3 24566 565544333

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.90  E-value=2.2e-22  Score=184.64  Aligned_cols=180  Identities=17%  Similarity=0.217  Sum_probs=123.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCC---CCcc--hhHHHHHHHHHhhcCCcEEEe
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAP---DHPE--TKIVINQFSRVVQHERCSFFG   91 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p---~~~~--~~~~~~~~~~~~~~~~i~~~~   91 (334)
                      ..++|+||||||||++||.+|++.+  ++|+|||+. .+||.+ +.++.+   .+..  ..++.........+.+..+..
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g--~~V~liE~~-~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRAN--LKTVMIERG-IPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQY   81 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccc
Confidence            4589999999999999999999997  999999986 455554 445543   3322  235555555666666666655


Q ss_pred             CeEEc-------eEEecccceeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCCCCe
Q 019876           92 NVTLG-------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT  161 (334)
Q Consensus        92 ~~~v~-------~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~  161 (334)
                      +..+.       ..+.....++.||+||||||+ .|+.|++||.+.   .++.+......             ....+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs-~~~~~~ipG~~~~~~~~v~~~~~~~~-------------~~~~~k~  147 (312)
T 4gcm_A           82 GDIKSVEDKGEYKVINFGNKELTAKAVIIATGA-EYKKIGVPGEQELGGRGVSYCAVCDG-------------AFFKNKR  147 (312)
T ss_dssp             CCCCEEEECSSCEEEECSSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHHHHG-------------GGGTTCE
T ss_pred             eeeeeeeeeecceeeccCCeEEEeceeEEcccC-ccCcCCCCChhhhCCccEEeeeccCc-------------cccCCCE
Confidence            43321       123334455789999999999 699999999763   23333211110             0125799


Q ss_pred             EEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       162 vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      |+|||||++|+|+|..|++                    .|. +||+++|+++++....  .....++..++....
T Consensus       148 vvViGgG~ig~E~A~~l~~--------------------~g~-~Vtlv~~~~~~~~~~~--~~~~~~~~~~~~~~~  200 (312)
T 4gcm_A          148 LFVIGGGDSAVEEGTFLTK--------------------FAD-KVTIVHRRDELRAQRI--LQDRAFKNDKIDFIW  200 (312)
T ss_dssp             EEEECCSHHHHHHHHHHTT--------------------TCS-EEEEECSSSSCCSCHH--HHHHHHHCTTEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHh--------------------cCC-EEEEEecccccCcchh--HHHHHHHhcCcceee
Confidence            9999999999999999996                    565 6999999988764332  223445555655543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.89  E-value=1.3e-22  Score=185.80  Aligned_cols=165  Identities=17%  Similarity=0.226  Sum_probs=115.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC----Cccccccc-----c--CCCCcchhHHHHHHHHHhhcCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT----PFGLVRSG-----V--APDHPETKIVINQFSRVVQHERC   87 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~----~gg~~~~~-----~--~p~~~~~~~~~~~~~~~~~~~~i   87 (334)
                      .++|+||||||||++||.+|++.+  .+|+|||+...    ++|++...     +  +|......++..++.+.+.+.++
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g--~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~   81 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSS--LKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGT   81 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCc
Confidence            579999999999999999999997  99999999753    23333210     0  12223446777888888888888


Q ss_pred             EEEeCeEEce-------EEec-ccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCC
Q 019876           88 SFFGNVTLGS-------SVSL-SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKST  159 (334)
Q Consensus        88 ~~~~~~~v~~-------~v~~-~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++........       .+.. +..++.||+||||||+ .|+.|++||.+........... .....       ..+..+
T Consensus        82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~-~~~~~~ipG~~~~~~~~~~~~~-~~~~~-------~~~~~~  152 (314)
T 4a5l_A           82 TIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGA-TAKRMHVPGEDKYWQNGVSACA-ICDGA-------VPIFRN  152 (314)
T ss_dssp             EEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCE-EECCCCCTTHHHHBTTTEESCH-HHHTT-------SGGGTT
T ss_pred             EEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccc-cccccCCCccccccccceeeeh-hhhhh-------hhhcCC
Confidence            8876654321       1222 2334689999999999 6999999998643222111111 11111       112367


Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ++|+|||+|++|+|+|..|++                    .|. +||+++|....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~--------------------~G~-~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTK--------------------YGS-KVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT--------------------TSS-EEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHH--------------------hCC-eeeeecccccc
Confidence            999999999999999999996                    675 69999987654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.89  E-value=1.9e-23  Score=199.75  Aligned_cols=217  Identities=20%  Similarity=0.210  Sum_probs=150.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc---cccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~---~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ..++|+|||||+||++||..|++.++..+|+|||+++.++..   +......+......+.....+++.+.+++++.++.
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   87 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE   87 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence            457999999999999999999999855669999998764321   11112122222233333345566778999998854


Q ss_pred             Ec------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCC-CCeEEEEc
Q 019876           95 LG------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKS-TDTAVILG  166 (334)
Q Consensus        95 v~------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~k~vvVIG  166 (334)
                      +.      ..+.+.++ .+.||+||+|||+ .|+.|++||.+.++++..++...... .      ...+.. +++|+|||
T Consensus        88 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~-~~~~~~i~g~~~~~v~~~~~~~d~~~-l------~~~~~~~~~~vvViG  159 (415)
T 3lxd_A           88 VVSLDPAAHTVKLGDGSAIEYGKLIWATGG-DPRRLSCVGADLAGVHAVRTKEDADR-L------MAELDAGAKNAVVIG  159 (415)
T ss_dssp             EEEEETTTTEEEETTSCEEEEEEEEECCCE-ECCCCBTTSSCCBTEECCCSHHHHHH-H------HHHHHTTCCEEEEEC
T ss_pred             EEEEECCCCEEEECCCCEEEeeEEEEccCC-ccCCCCCCCccccCEEEEcCHHHHHH-H------HHHhhhcCCeEEEEC
Confidence            42      24555444 4689999999999 69999999988788875543322110 0      000113 79999999


Q ss_pred             CCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCC
Q 019876          167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSP  246 (334)
Q Consensus       167 ~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~  246 (334)
                      +|++|+|+|..|.+                    .|. +||++++.+.++....++++.+.                   
T Consensus       160 gG~~g~e~A~~l~~--------------------~g~-~Vtvv~~~~~~l~~~~~~~~~~~-------------------  199 (415)
T 3lxd_A          160 GGYIGLEAAAVLTK--------------------FGV-NVTLLEALPRVLARVAGEALSEF-------------------  199 (415)
T ss_dssp             CSHHHHHHHHHHHH--------------------TTC-EEEEEESSSSTTTTTSCHHHHHH-------------------
T ss_pred             CCHHHHHHHHHHHh--------------------cCC-eEEEEecCCchhhhhcCHHHHHH-------------------
Confidence            99999999999986                    565 69999999887654433333222                   


Q ss_pred             CchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          247 TDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                                        +.+.+         .+.||+|++++.+++|.  + +++++++|.+.++
T Consensus       200 ------------------l~~~l---------~~~GV~i~~~~~v~~i~--~-~~~~v~~v~l~dG  235 (415)
T 3lxd_A          200 ------------------YQAEH---------RAHGVDLRTGAAMDCIE--G-DGTKVTGVRMQDG  235 (415)
T ss_dssp             ------------------HHHHH---------HHTTCEEEETCCEEEEE--E-SSSBEEEEEESSS
T ss_pred             ------------------HHHHH---------HhCCCEEEECCEEEEEE--e-cCCcEEEEEeCCC
Confidence                              22222         25699999999999998  5 3578888988654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.89  E-value=1.3e-23  Score=200.57  Aligned_cols=213  Identities=17%  Similarity=0.207  Sum_probs=143.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc---cccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~---~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ++|+|||||+||++||.+|++.++..+|+|||+++.++..   +...+..+......+ ....+++.+.+++++.++.+.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSCTTHHHHTTCEEEESCCEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCCHHHHHHCCCEEEeCCEEE
Confidence            5899999999999999999999866679999998764321   110010110001111 122344566799999885442


Q ss_pred             ------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCH
Q 019876           97 ------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN  169 (334)
Q Consensus        97 ------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~  169 (334)
                            ..+.+.++ .+.||+||||||+ .|+.|++||.+.+++++.+++.....       +...+..+++|+|||+|+
T Consensus        82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~-~p~~~~ipG~~~~~v~~~~~~~d~~~-------l~~~~~~~~~vvViGgG~  153 (410)
T 3ef6_A           82 ALDVQTRTISLDDGTTLSADAIVIATGS-RARTMALPGSQLPGVVTLRTYGDVQV-------LRDSWTSATRLLIVGGGL  153 (410)
T ss_dssp             EEETTTTEEEETTSCEEECSEEEECCCE-EECCCCCTTTTSTTEECCCSHHHHHH-------HHHHCCTTCEEEEECCSH
T ss_pred             EEECCCCEEEECCCCEEECCEEEEccCC-cccCCCCCCccccceEEeccHHHHHH-------HHHHhccCCeEEEECCCH
Confidence                  24555544 4689999999999 59999999988888876544432111       000123689999999999


Q ss_pred             HHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCch
Q 019876          170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE  249 (334)
Q Consensus       170 ~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~  249 (334)
                      +|+|+|..|.+                    .|. +||++++.+.++....+++                          
T Consensus       154 ~g~E~A~~l~~--------------------~g~-~Vtvv~~~~~~l~~~~~~~--------------------------  186 (410)
T 3ef6_A          154 IGCEVATTARK--------------------LGL-SVTILEAGDELLVRVLGRR--------------------------  186 (410)
T ss_dssp             HHHHHHHHHHH--------------------TTC-EEEEECSSSSSSHHHHCHH--------------------------
T ss_pred             HHHHHHHHHHh--------------------CCC-eEEEEecCCccchhhcCHH--------------------------
Confidence            99999999986                    565 6999999887642211111                          


Q ss_pred             hhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                                 ..+.+.+.+.         +.||+|++++.+++|.  +  ++++.+|.+.++
T Consensus       187 -----------~~~~l~~~l~---------~~GV~i~~~~~v~~i~--~--~~~~~~v~~~dg  225 (410)
T 3ef6_A          187 -----------IGAWLRGLLT---------ELGVQVELGTGVVGFS--G--EGQLEQVMASDG  225 (410)
T ss_dssp             -----------HHHHHHHHHH---------HHTCEEECSCCEEEEE--C--SSSCCEEEETTS
T ss_pred             -----------HHHHHHHHHH---------HCCCEEEeCCEEEEEe--c--cCcEEEEEECCC
Confidence                       1223333332         5699999999999998  5  457778887543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.88  E-value=5.5e-23  Score=195.85  Aligned_cols=216  Identities=17%  Similarity=0.190  Sum_probs=145.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc-ccc--ccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GLV--RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g-g~~--~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      +++|+|||||+||++||.+|++.+++.+|+|||+++... ...  ......+.....++.....+++.+.+++++.....
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~   80 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMV   80 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEE
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEE
Confidence            368999999999999999999998555999999987542 211  10111111111222223345566778998873322


Q ss_pred             c-----eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCH
Q 019876           96 G-----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN  169 (334)
Q Consensus        96 ~-----~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~  169 (334)
                      .     ..+.+.++ ...||+||+|||+ .|+.|++||.+.+++++.+........       ...+..+++++|||+|+
T Consensus        81 ~id~~~~~v~~~~g~~~~~d~lvlAtG~-~p~~~~i~g~~~~~v~~~~~~~d~~~l-------~~~~~~~~~vvViGgG~  152 (404)
T 3fg2_P           81 SIDREGRKLLLASGTAIEYGHLVLATGA-RNRMLDVPNASLPDVLYLRTLDESEVL-------RQRMPDKKHVVVIGAGF  152 (404)
T ss_dssp             EEETTTTEEEESSSCEEECSEEEECCCE-EECCCCSTTTTSTTEECCSSHHHHHHH-------HHHGGGCSEEEEECCSH
T ss_pred             EEECCCCEEEECCCCEEECCEEEEeeCC-CccCCCCCCCCCCcEEEECCHHHHHHH-------HHHhhcCCeEEEECCCH
Confidence            1     24555554 4689999999999 699999999888888865443321100       00122579999999999


Q ss_pred             HHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCch
Q 019876          170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE  249 (334)
Q Consensus       170 ~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~  249 (334)
                      +|+|+|..|.+                    .+. +|+++++.+.++....++++.+                       
T Consensus       153 ~g~e~A~~l~~--------------------~g~-~Vtvv~~~~~~~~~~~~~~~~~-----------------------  188 (404)
T 3fg2_P          153 IGLEFAATARA--------------------KGL-EVDVVELAPRVMARVVTPEISS-----------------------  188 (404)
T ss_dssp             HHHHHHHHHHH--------------------TTC-EEEEECSSSSTTTTTSCHHHHH-----------------------
T ss_pred             HHHHHHHHHHh--------------------CCC-EEEEEeCCCcchhhccCHHHHH-----------------------
Confidence            99999999986                    565 6999999987764433333322                       


Q ss_pred             hhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                                    .+.+.+         .+.||+|++++.+++|.  + +++++.+|.+.++
T Consensus       189 --------------~l~~~l---------~~~GV~i~~~~~v~~i~--~-~~~~v~~V~~~dG  225 (404)
T 3fg2_P          189 --------------YFHDRH---------SGAGIRMHYGVRATEIA--A-EGDRVTGVVLSDG  225 (404)
T ss_dssp             --------------HHHHHH---------HHTTCEEECSCCEEEEE--E-ETTEEEEEEETTS
T ss_pred             --------------HHHHHH---------HhCCcEEEECCEEEEEE--e-cCCcEEEEEeCCC
Confidence                          222222         25689999999999998  5 3578888888654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.88  E-value=9.5e-22  Score=179.71  Aligned_cols=199  Identities=19%  Similarity=0.282  Sum_probs=143.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEE-EcCCCCCccccccc----cCCCCc---chhHHHHHHHHHhhcCCcEE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDI-IDRLPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERCSF   89 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~v-ie~~~~~gg~~~~~----~~p~~~---~~~~~~~~~~~~~~~~~i~~   89 (334)
                      .+++|+|||||+||++||.+|++.+  .+|+| +|+ +.+||.+.+.    .+|.+.   ...++..++.+++.+.++++
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   79 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGG--LKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKH   79 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHT--CSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC--CCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEE
Confidence            4579999999999999999999987  99999 999 5677776441    124433   45678888899999999999


Q ss_pred             EeCeEEce--------E--EecccceeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCC
Q 019876           90 FGNVTLGS--------S--VSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDL  156 (334)
Q Consensus        90 ~~~~~v~~--------~--v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~  156 (334)
                      +.+..+..        .  +..++ ...||+||+|||+ .|+.|++||.+.   .+++....... .            .
T Consensus        80 ~~~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~-~------------~  144 (315)
T 3r9u_A           80 EMVGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGS-APKKAGFKGEDEFFGKGVSTCATCDG-F------------F  144 (315)
T ss_dssp             ECCCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCE-EECCCCCBTTTTTBTTTEESCHHHHG-G------------G
T ss_pred             EEEEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCC-CCCCCCCCChhhcCCCeEEeeecccc-c------------c
Confidence            88754332        1  22223 5689999999999 688889999764   44444322211 0            1


Q ss_pred             CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEE
Q 019876          157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH  236 (334)
Q Consensus       157 ~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~  236 (334)
                      ..+++++|||+|.+|+|+|..|.+                    .+ .+|++++|++.+.  .....             
T Consensus       145 ~~~~~v~viG~g~~~~e~a~~l~~--------------------~g-~~v~~~~~~~~~~--~~~~~-------------  188 (315)
T 3r9u_A          145 YKNKEVAVLGGGDTALEEALYLAN--------------------IC-SKIYLIHRRDEFR--AAPST-------------  188 (315)
T ss_dssp             GTTSEEEEECCBHHHHHHHHHHHT--------------------TS-SEEEEECSSSSCB--SCHHH-------------
T ss_pred             cCcCEEEEECCCHHHHHHHHHHHh--------------------hC-CEEEEEEeCCCCC--CCHHH-------------
Confidence            257999999999999999999996                    55 4699999987652  11111             


Q ss_pred             EccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876          237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                                                  +++.+         .+.||+|++++.+++|.  . +++++.+|.+.
T Consensus       189 ----------------------------~~~~~---------~~~gv~~~~~~~v~~i~--~-~~~~~~~v~~~  222 (315)
T 3r9u_A          189 ----------------------------VEKVK---------KNEKIELITSASVDEVY--G-DKMGVAGVKVK  222 (315)
T ss_dssp             ----------------------------HHHHH---------HCTTEEEECSCEEEEEE--E-ETTEEEEEEEE
T ss_pred             ----------------------------HHHHH---------hcCCeEEEeCcEEEEEE--c-CCCcEEEEEEE
Confidence                                        11111         15689999999999997  5 35678888887

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.88  E-value=2.6e-22  Score=193.69  Aligned_cols=170  Identities=18%  Similarity=0.192  Sum_probs=114.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc---CCCCcchhHHHHHHHHHh-hcCCcEEEeCeE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHPETKIVINQFSRVV-QHERCSFFGNVT   94 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~---~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~   94 (334)
                      +++|+|||||+||+++|..|++.+++.+|+|||+++..+... .++   .++.....++..+..+.+ ++.+++++.++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~   81 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP-CGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAE   81 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-------------------------CTHHHHTTCEEETTCE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC-cCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCE
Confidence            579999999999999999999987679999999988654221 111   111122233333333334 577999998865


Q ss_pred             Ec------eEEecccc--eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCCCCCCCCCCeEEE
Q 019876           95 LG------SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTAVI  164 (334)
Q Consensus        95 v~------~~v~~~~~--~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~vvV  164 (334)
                      +.      ..+...+.  ...||+||||||+ .|+.|++||.+.+++++.......  ....+.       -..+++++|
T Consensus        82 v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~vvV  153 (449)
T 3kd9_A           82 VIEVDTGYVRVRENGGEKSYEWDYLVFANGA-SPQVPAIEGVNLKGVFTADLPPDALAIREYME-------KYKVENVVI  153 (449)
T ss_dssp             EEEECSSEEEEECSSSEEEEECSEEEECCCE-EECCCSCBTTTSTTEECSCSTHHHHHHHHHHS-------SSCCCEEEE
T ss_pred             EEEEecCCCEEEECCceEEEEcCEEEECCCC-CCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHH-------hcCCCeEEE
Confidence            42      23444443  4689999999999 589999999887777755332211  111100       015789999


Q ss_pred             EcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC
Q 019876          165 LGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA  218 (334)
Q Consensus       165 IG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~  218 (334)
                      ||+|++|+|+|..|++                    .|. +|++++|+++++..
T Consensus       154 iGgG~~g~E~A~~l~~--------------------~g~-~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          154 IGGGYIGIEMAEAFAA--------------------QGK-NVTMIVRGERVLRR  186 (449)
T ss_dssp             ECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSSSTTTT
T ss_pred             ECCCHHHHHHHHHHHh--------------------CCC-eEEEEEcCCccchh
Confidence            9999999999999986                    565 69999999887655

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.88  E-value=1.1e-21  Score=181.20  Aligned_cols=205  Identities=15%  Similarity=0.236  Sum_probs=145.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC----CCcccccccc----CCC---CcchhHHHHHHHHHhhcC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP----TPFGLVRSGV----APD---HPETKIVINQFSRVVQHE   85 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~----~~gg~~~~~~----~p~---~~~~~~~~~~~~~~~~~~   85 (334)
                      ..+++|+|||||++|+++|..|++.+  ++|+|||+.+    .+||.+.+..    +|.   .....++..++.+.+.+.
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAE--IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKF   97 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHc
Confidence            35689999999999999999999997  9999999954    6788776421    233   334567888888888999


Q ss_pred             CcEEEeCeEEce-------EEec----ccceeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCC
Q 019876           86 RCSFFGNVTLGS-------SVSL----SELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKN  151 (334)
Q Consensus        86 ~i~~~~~~~v~~-------~v~~----~~~~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~  151 (334)
                      +++++.++.+..       .+..    ......||+||+|||+ .|+.|++||.+.   .++.......    ...    
T Consensus        98 gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~----~~~----  168 (338)
T 3itj_A           98 GTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA-SAKRMHLPGEETYWQKGISACAVCD----GAV----  168 (338)
T ss_dssp             TCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE-EECCCCCTTHHHHBTTTEESCHHHH----TTS----
T ss_pred             CCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC-CcCCCCCCCchhccCccEEEchhcc----cch----
Confidence            999998874321       1222    2234689999999999 588889998642   3333332111    100    


Q ss_pred             CCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCC
Q 019876          152 LSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIK  231 (334)
Q Consensus       152 ~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~  231 (334)
                         ....+++|+|||+|.+|+|+|..|.+                    .+. +|++++|++.+..  . +         
T Consensus       169 ---~~~~~~~v~vvG~G~~g~e~a~~l~~--------------------~g~-~v~~v~~~~~~~~--~-~---------  212 (338)
T 3itj_A          169 ---PIFRNKPLAVIGGGDSACEEAQFLTK--------------------YGS-KVFMLVRKDHLRA--S-T---------  212 (338)
T ss_dssp             ---GGGTTSEEEEECSSHHHHHHHHHHTT--------------------TSS-EEEEECSSSSCCS--C-H---------
T ss_pred             ---hhcCCCEEEEECCCHHHHHHHHHHHh--------------------cCC-EEEEEEcCCccCC--C-H---------
Confidence               02367999999999999999999996                    554 6999999876531  0 0         


Q ss_pred             ceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       232 gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                                      .+.+.+.        ...||+|++++.+++|.  + +++++.+|.+.+
T Consensus       213 --------------------------------~~~~~l~--------~~~gv~i~~~~~v~~i~--~-~~~~~~~v~~~~  249 (338)
T 3itj_A          213 --------------------------------IMQKRAE--------KNEKIEILYNTVALEAK--G-DGKLLNALRIKN  249 (338)
T ss_dssp             --------------------------------HHHHHHH--------HCTTEEEECSEEEEEEE--E-SSSSEEEEEEEE
T ss_pred             --------------------------------HHHHHHH--------hcCCeEEeecceeEEEE--c-ccCcEEEEEEEE
Confidence                                            0111111        13489999999999998  5 356788898876

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.88  E-value=3.7e-23  Score=195.90  Aligned_cols=191  Identities=14%  Similarity=0.159  Sum_probs=136.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc-cccc-ccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRS-GVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg-~~~~-~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      +..||+|||||+||++||..|...  +.+|+|||+++.++. .... ...++.....++..+..+++++.+++++.++.+
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~--~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V   85 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGK--CDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFA   85 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTT--CSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCC--CCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEE
Confidence            467999999999999999999444  599999999876531 1110 011222223344444556677789999988654


Q ss_pred             c------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCC
Q 019876           96 G------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG  168 (334)
Q Consensus        96 ~------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G  168 (334)
                      .      +.+.+.++ .+.||+||||||+ .|+.|++||.+  ++++.+++......       ...+..+++|+|||+|
T Consensus        86 ~~id~~~~~v~~~~g~~~~yd~lvlAtG~-~p~~p~i~G~~--~v~~~~~~~d~~~l-------~~~l~~~~~vvVIGgG  155 (385)
T 3klj_A           86 TSIDPNNKLVTLKSGEKIKYEKLIIASGS-IANKIKVPHAD--EIFSLYSYDDALKI-------KDECKNKGKAFIIGGG  155 (385)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCE-EECCCCCTTCS--CEECCSSHHHHHHH-------HHHHHHHSCEEEECCS
T ss_pred             EEEECCCCEEEECCCCEEECCEEEEecCC-CcCCCCCCCCC--CeEEeCCHHHHHHH-------HHHhhcCCeEEEECCC
Confidence            2      24555555 4689999999999 69999999987  77765444321110       0001136899999999


Q ss_pred             HHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC-CCH---HHHHHHHcCCceEEEEccCc
Q 019876          169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-CTA---KELREILGIKNLYVHIREDD  241 (334)
Q Consensus       169 ~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~-~~~---~~~~~~l~~~gv~~~~~~~~  241 (334)
                      ++|+|+|..|++                    .|. +||++++++.++.. +++   +.+.+.++..||+++.+...
T Consensus       156 ~~g~E~A~~l~~--------------------~g~-~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v  211 (385)
T 3klj_A          156 ILGIELAQAIID--------------------SGT-PASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF  211 (385)
T ss_dssp             HHHHHHHHHHHH--------------------HTC-CEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCG
T ss_pred             HHHHHHHHHHHh--------------------CCC-eEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            999999999986                    565 69999999988876 444   45677788899999987544

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.88  E-value=7.3e-22  Score=194.25  Aligned_cols=168  Identities=19%  Similarity=0.263  Sum_probs=121.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCC------------------------cc-
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDH------------------------PE-   70 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~------------------------~~-   70 (334)
                      ...++|+|||||++|++||.+|++.+  .+|+|||+++.+||.+.+ ++.|.+                        .. 
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~  118 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEK  118 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhh
Confidence            34689999999999999999999997  999999999867776543 332221                        11 


Q ss_pred             ---hhHHHHHHH-------HHh-----hcCCcEEE-eCeEE---ceEEecccceeccCeEEEeccCCCCCCCCCCCccCC
Q 019876           71 ---TKIVINQFS-------RVV-----QHERCSFF-GNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI  131 (334)
Q Consensus        71 ---~~~~~~~~~-------~~~-----~~~~i~~~-~~~~v---~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~  131 (334)
                         ..++..++.       .++     ++.+++++ .+...   ...+.+....+.||+||+|||+ .|..|++||.+.+
T Consensus       119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~G~~~~  197 (523)
T 1mo9_A          119 VVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGA-GPGTLDVPGVNAK  197 (523)
T ss_dssp             CCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCE-ECCCCCSTTTTSB
T ss_pred             hhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECCEEEEeCEEEECCCC-CCCCCCCCCcccC
Confidence               223333332       445     67789887 44321   1234444334689999999999 5899999998877


Q ss_pred             CccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEee
Q 019876          132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR  211 (334)
Q Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r  211 (334)
                      ++++..++...+..          . .+++++|||+|++|+|+|..|.+                    .|. +|+++++
T Consensus       198 ~v~~~~~~~~~l~~----------~-~g~~vvViGgG~~g~E~A~~l~~--------------------~G~-~Vtlv~~  245 (523)
T 1mo9_A          198 GVFDHATLVEELDY----------E-PGSTVVVVGGSKTAVEYGCFFNA--------------------TGR-RTVMLVR  245 (523)
T ss_dssp             TEEEHHHHHHHCCS----------C-CCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECS
T ss_pred             cEeeHHHHHHHHHh----------c-CCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEEe
Confidence            88877766522211          1 34999999999999999999986                    675 6999999


Q ss_pred             cCccccCC
Q 019876          212 RGPVQAAC  219 (334)
Q Consensus       212 ~~~~~~~~  219 (334)
                      .+.++..+
T Consensus       246 ~~~~l~~~  253 (523)
T 1mo9_A          246 TEPLKLIK  253 (523)
T ss_dssp             SCTTTTCC
T ss_pred             cCcccccc
Confidence            98776544

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.87  E-value=6.9e-22  Score=191.73  Aligned_cols=165  Identities=16%  Similarity=0.224  Sum_probs=119.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCc----------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHP----------------------------   69 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~----------------------------   69 (334)
                      .++|+|||||+||++||..|++.+  .+|+|||+++.+||.|.+ ++.|.+.                            
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLG--MKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTM   79 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence            468999999999999999999997  999999999888876532 3333211                            


Q ss_pred             chhHH-----------HHHHHHHhhcCCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCCCCCccC
Q 019876           70 ETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL  130 (334)
Q Consensus        70 ~~~~~-----------~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~~  130 (334)
                      ....+           ...+..++++.+++++.++.+.     ..+...++   .+.||+||+|||+ .|..|+++|.+.
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~-~p~~p~~~g~~~  158 (468)
T 2qae_A           80 DSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGS-EPTELPFLPFDE  158 (468)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCE-EECCBTTBCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCC-CcCCCCCCCCCc
Confidence            01111           1122455566789988776542     12333333   4689999999999 588888999876


Q ss_pred             CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEe
Q 019876          131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG  210 (334)
Q Consensus       131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~  210 (334)
                      +++++..++..    ..         ..+++++|||+|++|+|+|..|.+                    .|. +|++++
T Consensus       159 ~~v~t~~~~~~----~~---------~~~~~vvViGgG~~g~E~A~~l~~--------------------~g~-~Vtlv~  204 (468)
T 2qae_A          159 KVVLSSTGALA----LP---------RVPKTMVVIGGGVIGLELGSVWAR--------------------LGA-EVTVVE  204 (468)
T ss_dssp             SSEECHHHHHT----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEC
T ss_pred             CceechHHHhh----cc---------cCCceEEEECCCHHHHHHHHHHHH--------------------hCC-EEEEEe
Confidence            67877765542    11         146899999999999999999986                    565 699999


Q ss_pred             ecCccccCCC
Q 019876          211 RRGPVQAACT  220 (334)
Q Consensus       211 r~~~~~~~~~  220 (334)
                      |++.++..++
T Consensus       205 ~~~~~l~~~d  214 (468)
T 2qae_A          205 FAPRCAPTLD  214 (468)
T ss_dssp             SSSSSSTTSC
T ss_pred             cCCcccccCC
Confidence            9988765443

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.87  E-value=8.7e-22  Score=190.99  Aligned_cols=162  Identities=23%  Similarity=0.290  Sum_probs=115.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-cc------------------CCCC---------c
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GV------------------APDH---------P   69 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~------------------~p~~---------~   69 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|||++ .+||.|.+ ++                  .|.+         .
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQG--AQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI   79 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc
Confidence            3579999999999999999999987  999999998 56665422 21                  1111         0


Q ss_pred             chhHHH-------HH-----HHHHhhcC-CcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCCCCCc
Q 019876           70 ETKIVI-------NQ-----FSRVVQHE-RCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGE  128 (334)
Q Consensus        70 ~~~~~~-------~~-----~~~~~~~~-~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~  128 (334)
                      ....+.       .+     +.+++++. +++++.+....     ..+...++   .+.||+||||||+ .|+.|++||.
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~G~  158 (467)
T 1zk7_A           80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGA-SPAVPPIPGL  158 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCE-EECCCCCTTT
T ss_pred             CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCC-CCCCCCCCCC
Confidence            111121       11     23455666 89988765321     12333333   4689999999999 6999999998


Q ss_pred             cCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEE
Q 019876          129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL  208 (334)
Q Consensus       129 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vti  208 (334)
                      +..++++..++... .            ..+++|+|||+|++|+|+|..|++                    .|. +|++
T Consensus       159 ~~~~~~~~~~~~~~-~------------~~~~~vvViGgG~~g~E~A~~l~~--------------------~g~-~Vtl  204 (467)
T 1zk7_A          159 KESPYWTSTEALAS-D------------TIPERLAVIGSSVVALELAQAFAR--------------------LGS-KVTV  204 (467)
T ss_dssp             TTSCCBCHHHHHHC-S------------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEE
T ss_pred             CcCceecHHHHhcc-c------------ccCCEEEEECCCHHHHHHHHHHHH--------------------cCC-EEEE
Confidence            76667766655421 0            146899999999999999999986                    565 6999


Q ss_pred             EeecCcccc
Q 019876          209 VGRRGPVQA  217 (334)
Q Consensus       209 v~r~~~~~~  217 (334)
                      ++|++.++.
T Consensus       205 v~~~~~~l~  213 (467)
T 1zk7_A          205 LARNTLFFR  213 (467)
T ss_dssp             ECSSCTTTT
T ss_pred             EEECCccCC
Confidence            999987764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.87  E-value=4e-22  Score=192.31  Aligned_cols=211  Identities=18%  Similarity=0.284  Sum_probs=139.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc---CCC-CcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APD-HPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~---~p~-~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      |+|+|||||+||++||..|++.+++.+|+|||+++..+. ...++   ..+ ....+++..+..+.+++.+++++.+..+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   79 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF-LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB-CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCc-ccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence            589999999999999999999855699999999876531 11111   001 0112222223344556678998777665


Q ss_pred             c------eEEeccc---c---eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCC--CCCe
Q 019876           96 G------SSVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLK--STDT  161 (334)
Q Consensus        96 ~------~~v~~~~---~---~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~k~  161 (334)
                      .      ..+.+.+   +   ++.||+||||||+ .|..|++||.+.+++++..++.......       ..+.  .+++
T Consensus        80 ~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~-------~~~~~~~~~~  151 (447)
T 1nhp_A           80 TAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VPFELDIPGKDLDNIYLMRGRQWAIKLK-------QKTVDPEVNN  151 (447)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCSTTTTSBSEECCCHHHHHHHHH-------HHHTCTTCCE
T ss_pred             EEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCC-CcCCCCCCCCCCCCeEEECCHHHHHHHH-------HHhhhcCCCe
Confidence            2      2344432   2   2689999999999 5888999998877888765543211000       0011  5689


Q ss_pred             EEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCc
Q 019876          162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD  241 (334)
Q Consensus       162 vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~  241 (334)
                      ++|||+|++|+|+|..|++                    .|. +|+++++.+.++..+.++++.                
T Consensus       152 vvIiG~G~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~l~~~~~~~~~----------------  194 (447)
T 1nhp_A          152 VVVIGSGYIGIEAAEAFAK--------------------AGK-KVTVIDILDRPLGVYLDKEFT----------------  194 (447)
T ss_dssp             EEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSSSTTTTTCCHHHH----------------
T ss_pred             EEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCcccccccCCHHHH----------------
Confidence            9999999999999999986                    565 699999998775432222221                


Q ss_pred             cCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876          242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                                           +.+.+.+.         +.||+|++++.+++|.  +  ++++..|.+.
T Consensus       195 ---------------------~~l~~~l~---------~~gv~i~~~~~v~~i~--~--~~~v~~v~~~  229 (447)
T 1nhp_A          195 ---------------------DVLTEEME---------ANNITIATGETVERYE--G--DGRVQKVVTD  229 (447)
T ss_dssp             ---------------------HHHHHHHH---------TTTEEEEESCCEEEEE--C--SSBCCEEEES
T ss_pred             ---------------------HHHHHHHH---------hCCCEEEcCCEEEEEE--c--cCcEEEEEEC
Confidence                                 22233332         5689999999999987  5  3555555553

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.87  E-value=5.2e-21  Score=175.23  Aligned_cols=198  Identities=22%  Similarity=0.278  Sum_probs=142.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc----cCCCCc--chhHHHHHHHHHhhcCCcEEEeC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP--ETKIVINQFSRVVQHERCSFFGN   92 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~----~~p~~~--~~~~~~~~~~~~~~~~~i~~~~~   92 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||++  +||.+.+.    ..|.+.  ...++..++.+.+.+.+++++..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   90 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYM--LKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLD   90 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEES
T ss_pred             ccCEEEECccHHHHHHHHHHHHCC--CcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            469999999999999999999997  999999998  77777541    113332  34578888888888889998874


Q ss_pred             eEEce-------EEeccc-ceeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCCCCe
Q 019876           93 VTLGS-------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT  161 (334)
Q Consensus        93 ~~v~~-------~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~  161 (334)
                      .....       .+...+ ..+.||+||+|||+. |..|++||.+.   ++++... ....            ....+++
T Consensus        91 ~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~-~~~~~i~g~~~~~~~~~~~~~-~~~~------------~~~~~~~  156 (323)
T 3f8d_A           91 IVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK-RRKLGVPGEQEFAGRGISYCS-VADA------------PLFKNRV  156 (323)
T ss_dssp             CEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE-ECCCCCTTTTTTBTTTEESCH-HHHG------------GGGTTCE
T ss_pred             EEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC-CccCCCCchhhhcCCceEEec-cCCH------------hHcCCCE
Confidence            43321       234444 346899999999994 88889999764   4553321 1110            0125799


Q ss_pred             EEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCc
Q 019876          162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD  241 (334)
Q Consensus       162 vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~  241 (334)
                      |+|||+|.+|+|+|..|.+                    .+. +|++++|++.+..  .+.                   
T Consensus       157 v~vvG~G~~~~e~a~~l~~--------------------~g~-~v~~~~~~~~~~~--~~~-------------------  194 (323)
T 3f8d_A          157 VAVIGGGDSALEGAEILSS--------------------YST-KVYLIHRRDTFKA--QPI-------------------  194 (323)
T ss_dssp             EEEECCSHHHHHHHHHHHH--------------------HSS-EEEEECSSSSCCS--CHH-------------------
T ss_pred             EEEECCCHHHHHHHHHHHH--------------------hCC-eEEEEEeCCCCCc--CHH-------------------
Confidence            9999999999999999986                    454 6999999876532  110                   


Q ss_pred             cCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                            .+++..         ...||+|++++.+++|.  +  ++++.+|.+.+
T Consensus       195 ----------------------~~~~~~---------~~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~  229 (323)
T 3f8d_A          195 ----------------------YVETVK---------KKPNVEFVLNSVVKEIK--G--DKVVKQVVVEN  229 (323)
T ss_dssp             ----------------------HHHHHH---------TCTTEEEECSEEEEEEE--E--SSSEEEEEEEE
T ss_pred             ----------------------HHHHHH---------hCCCcEEEeCCEEEEEe--c--cCceeEEEEEE
Confidence                                  111111         24589999999999998  5  46788888876

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.87  E-value=7.2e-22  Score=191.92  Aligned_cols=162  Identities=17%  Similarity=0.180  Sum_probs=118.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcc---------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPE---------------------------   70 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~---------------------------   70 (334)
                      .++|+||||||||++||..|++.+  .+|+|||+++.+||.|.+ ++.|.+..                           
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~   83 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLG--FKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRL   83 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCcc
Confidence            478999999999999999999997  999999999888876543 33332110                           


Q ss_pred             -hhHH-----------HHHHHHHhhcCCcEEEeCeEEc-----eEEeccc---ceeccCeEEEeccCCCCCCCCCCCccC
Q 019876           71 -TKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSE---LRQLYHVVVLAYGAESDRALGIPGEDL  130 (334)
Q Consensus        71 -~~~~-----------~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~---~~~~yd~lIlATGs~~p~~~~ipG~~~  130 (334)
                       ...+           ...+.+++++.+++++.+..+.     ..+...+   ..+.||+||+|||+ .|..|+++|.+.
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs-~p~~p~i~g~~~  162 (474)
T 1zmd_A           84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGS-EVTPFPGITIDE  162 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCE-EECCCTTCCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCC-CCCCCCCCCCCc
Confidence             1111           1122455667789998886542     1233333   24689999999999 588889999876


Q ss_pred             CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEe
Q 019876          131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG  210 (334)
Q Consensus       131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~  210 (334)
                      .++++..++..    ..         ..+++|+|||+|++|+|+|..|++                    .|. +|++++
T Consensus       163 ~~v~t~~~~~~----~~---------~~~~~vvViGgG~~g~E~A~~l~~--------------------~g~-~Vtlv~  208 (474)
T 1zmd_A          163 DTIVSSTGALS----LK---------KVPEKMVVIGAGVIGVELGSVWQR--------------------LGA-DVTAVE  208 (474)
T ss_dssp             SSEECHHHHTT----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEC
T ss_pred             CcEEcHHHHhh----cc---------ccCceEEEECCCHHHHHHHHHHHH--------------------cCC-EEEEEe
Confidence            66776655431    11         136899999999999999999986                    675 699999


Q ss_pred             ecCcccc
Q 019876          211 RRGPVQA  217 (334)
Q Consensus       211 r~~~~~~  217 (334)
                      +++.++.
T Consensus       209 ~~~~~l~  215 (474)
T 1zmd_A          209 FLGHVGG  215 (474)
T ss_dssp             SSSSSSC
T ss_pred             ccCccCC
Confidence            9988765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.87  E-value=1e-20  Score=174.34  Aligned_cols=199  Identities=22%  Similarity=0.286  Sum_probs=139.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc----cCCCC---cchhHHHHHHHHHhhcCCcEEEe
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG   91 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~----~~p~~---~~~~~~~~~~~~~~~~~~i~~~~   91 (334)
                      .++|+||||||+|+++|..|++.+  .+|+|||+. .+||.+.+.    ..|.+   ....++..++.+.+++.+++++.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~   84 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQ--LSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM   84 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcC--CcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence            478999999999999999999987  999999998 577766531    12333   23456777788888888999877


Q ss_pred             CeEEce----------EEeccc-ceeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCC
Q 019876           92 NVTLGS----------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLK  157 (334)
Q Consensus        92 ~~~v~~----------~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~  157 (334)
                      +.....          .+...+ ..+.||+||+|||+ .|..|++||.+.   .+++.......    .         ..
T Consensus        85 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~-~~~~~~i~g~~~~~~~~~~~~~~~~~----~---------~~  150 (325)
T 2q7v_A           85 DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA-DPRKLGIPGEDNFWGKGVSTCATCDG----F---------FY  150 (325)
T ss_dssp             CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHHHHG----G---------GG
T ss_pred             eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC-CcCCCCCCChhhccCceEEEeccCCH----H---------Hc
Confidence            543321          122222 23689999999999 588888998752   33433221111    0         12


Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++|+|||+|.+|+|+|..|++                    .+ .+|++++|++.+.  ..+.               
T Consensus       151 ~~~~v~VvG~G~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~~--~~~~---------------  192 (325)
T 2q7v_A          151 KGKKVVVIGGGDAAVEEGMFLTK--------------------FA-DEVTVIHRRDTLR--ANKV---------------  192 (325)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTT--------------------TC-SEEEEECSSSSCC--SCHH---------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--------------------cC-CEEEEEeCCCcCC--cchH---------------
Confidence            57999999999999999999986                    55 4799999987542  1110               


Q ss_pred             ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                                 +.+.+.        ...||+|++++.+++|.  +  ++++.+|.+.+
T Consensus       193 ---------------------------~~~~l~--------~~~gv~i~~~~~v~~i~--~--~~~v~~v~~~~  227 (325)
T 2q7v_A          193 ---------------------------AQARAF--------ANPKMKFIWDTAVEEIQ--G--ADSVSGVKLRN  227 (325)
T ss_dssp             ---------------------------HHHHHH--------TCTTEEEECSEEEEEEE--E--SSSEEEEEEEE
T ss_pred             ---------------------------HHHHHH--------hcCCceEecCCceEEEc--c--CCcEEEEEEEE
Confidence                                       111111        24589999999999998  5  46777888863

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.86  E-value=9e-21  Score=175.09  Aligned_cols=166  Identities=22%  Similarity=0.309  Sum_probs=115.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcC----CCCCccccccc----cCCCC---cchhHHHHHHHHHhhcCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR----LPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERC   87 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~----~~~~gg~~~~~----~~p~~---~~~~~~~~~~~~~~~~~~i   87 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||+    ....||.+.+.    ..|.+   ....++..++.+.+.+.++
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv   85 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT   85 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCC
Confidence            469999999999999999999987  99999998    45566665431    11332   2345677778888888899


Q ss_pred             EEEeCeEEce-------EEecccceeccCeEEEeccCCCCCCCCCCCccC-CCccchhhH--HHHhcCCCCCCCCCCCCC
Q 019876           88 SFFGNVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGEDL-IGVHSAREF--VWWYNGHPDGKNLSPDLK  157 (334)
Q Consensus        88 ~~~~~~~v~~-------~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~-~~v~~~~~~--~~~~~~~~~~~~~~~~~~  157 (334)
                      +++.+.....       .+.++...+.||+||+|||+ .|..|++||.+. .+++....+  ........       ...
T Consensus        86 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~  157 (333)
T 1vdc_A           86 TIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGA-VAKRLSFVGSGEVLGGFWNRGISACAVCDGAA-------PIF  157 (333)
T ss_dssp             EEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCE-EECCCCCBTCSSSSSCCBTTTEESCHHHHTTS-------GGG
T ss_pred             EEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCC-CcCCCCCCCccccccccccCcEEEeccCccch-------hhc
Confidence            9988763211       23333334689999999999 488888998754 222211110  00111110       013


Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .+++|+|||+|.+|+|+|..|.+                    .+. +|++++|++.+
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~--------------------~g~-~V~lv~~~~~~  194 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTK--------------------YGS-KVYIIHRRDAF  194 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTT--------------------TSS-EEEEECSSSSC
T ss_pred             CCCeEEEECCChHHHHHHHHHHh--------------------cCC-eEEEEecCCcC
Confidence            67999999999999999999986                    554 79999998765

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.86  E-value=8.2e-21  Score=174.28  Aligned_cols=203  Identities=20%  Similarity=0.256  Sum_probs=141.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc----cCCCC---cchhHHHHHHHHHhhcCCcEEEe
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG   91 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~----~~p~~---~~~~~~~~~~~~~~~~~~i~~~~   91 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||+. .+||.+.+.    ..|.+   ....++..++.+.+.+.+++++.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF   81 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCS-STTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEccC-CCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence            468999999999999999999987  999999975 567665431    12333   23456777778888888999988


Q ss_pred             CeEEceE-----Ee-cc-cceeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCCCCe
Q 019876           92 NVTLGSS-----VS-LS-ELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT  161 (334)
Q Consensus        92 ~~~v~~~-----v~-~~-~~~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~  161 (334)
                      +.....+     +. .. .....||+||+|||+ .|..|++||.+.   .++++.......             +..+++
T Consensus        82 ~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~  147 (320)
T 1trb_A           82 DHINKVDLQNRPFRLNGDNGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACATSDGF-------------FYRNQK  147 (320)
T ss_dssp             CCEEEEECSSSSEEEEESSCEEEEEEEEECCCE-EECCCCCHHHHHTBTTTEESCHHHHGG-------------GGTTSE
T ss_pred             eeeeEEEecCCEEEEEeCCCEEEcCEEEECCCC-CcCCCCCCChHHhCCceeEecccCCcc-------------ccCCCe
Confidence            8643221     11 22 234689999999999 588888888642   334333221110             125799


Q ss_pred             EEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCc
Q 019876          162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD  241 (334)
Q Consensus       162 vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~  241 (334)
                      |+|||+|++|+|+|..|++                    .+. +|++++|++.+..   .+.+                 
T Consensus       148 v~ViG~G~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~~~---~~~~-----------------  186 (320)
T 1trb_A          148 VAVIGGGNTAVEEALYLSN--------------------IAS-EVHLIHRRDGFRA---EKIL-----------------  186 (320)
T ss_dssp             EEEECSSHHHHHHHHHHTT--------------------TSS-EEEEECSSSSCCC---CHHH-----------------
T ss_pred             EEEECCCHHHHHHHHHHHh--------------------cCC-eEEEEEeCCcccc---CHHH-----------------
Confidence            9999999999999999996                    554 7999999876521   1111                 


Q ss_pred             cCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                          .+.+.+.+         .+.||+|++++.+++|.  + +++++.+|.+.+
T Consensus       187 --------------------~~~l~~~l---------~~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~  224 (320)
T 1trb_A          187 --------------------IKRLMDKV---------ENGNIILHTNRTLEEVT--G-DQMGVTGVRLRD  224 (320)
T ss_dssp             --------------------HHHHHHHH---------HTSSEEEECSCEEEEEE--E-CSSSEEEEEEEC
T ss_pred             --------------------HHHHHHhc---------ccCCeEEEcCceeEEEE--c-CCCceEEEEEEe
Confidence                                11222222         25799999999999998  5 345788888875

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.86  E-value=1.2e-21  Score=188.15  Aligned_cols=216  Identities=17%  Similarity=0.175  Sum_probs=141.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc-cccc--cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GLVR--SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g-g~~~--~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      .++|+|||||+||+++|..|++.+.+.+|+|||+++... ....  ..+..+......+.....+++++.+++++.++.+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            479999999999999999999998445899999986532 1111  0111111111122112234456678999887654


Q ss_pred             c------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccCCC---ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEE
Q 019876           96 G------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIG---VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL  165 (334)
Q Consensus        96 ~------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVI  165 (334)
                      .      ..+.+.++ .+.||+||+|||+ .|+.|++||.+.++   +++.++......       +...+..+++|+||
T Consensus        84 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~p~~~~i~G~~~~~~~~v~~~~~~~d~~~-------l~~~l~~~~~vvVi  155 (431)
T 1q1r_A           84 TAINRDRQQVILSDGRALDYDRLVLATGG-RPRPLPVASGAVGKANNFRYLRTLEDAEC-------IRRQLIADNRLVVI  155 (431)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCE-EECCCGGGTTHHHHSTTEEESSSHHHHHH-------HHHTCCTTCEEEEE
T ss_pred             EEEECCCCEEEECCCCEEECCEEEEcCCC-CccCCCCCCcccCCCceEEEECCHHHHHH-------HHHHhhcCCeEEEE
Confidence            2      24555444 4689999999999 68888999976555   654433221100       00112357999999


Q ss_pred             cCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCC
Q 019876          166 GQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS  245 (334)
Q Consensus       166 G~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~  245 (334)
                      |+|++|+|+|..|.+                    .|. +|+++++.+.++....++++.+                   
T Consensus       156 GgG~~g~E~A~~l~~--------------------~G~-~Vtlv~~~~~~l~~~~~~~~~~-------------------  195 (431)
T 1q1r_A          156 GGGYIGLEVAATAIK--------------------ANM-HVTLLDTAARVLERVTAPPVSA-------------------  195 (431)
T ss_dssp             CCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSTTTTTSCHHHHH-------------------
T ss_pred             CCCHHHHHHHHHHHh--------------------CCC-EEEEEEeCCccccchhhHHHHH-------------------
Confidence            999999999999986                    565 6999999987764433322221                   


Q ss_pred             CCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeecccc-CCCCeeEEEEEE
Q 019876          246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE-RSGHVSGVHFEK  311 (334)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~-~~~~v~~v~~~~  311 (334)
                                        .+.+.+         .+.||+|++++.+++|.  ++ ++++++.|.+.+
T Consensus       196 ------------------~l~~~l---------~~~GV~i~~~~~v~~i~--~~~~~~~v~~v~~~~  233 (431)
T 1q1r_A          196 ------------------FYEHLH---------REAGVDIRTGTQVCGFE--MSTDQQKVTAVLCED  233 (431)
T ss_dssp             ------------------HHHHHH---------HHHTCEEECSCCEEEEE--ECTTTCCEEEEEETT
T ss_pred             ------------------HHHHHH---------HhCCeEEEeCCEEEEEE--eccCCCcEEEEEeCC
Confidence                              122222         14589999999999997  30 146777777754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.86  E-value=2.3e-20  Score=170.59  Aligned_cols=198  Identities=17%  Similarity=0.217  Sum_probs=138.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--cc--CC--CCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--AP--DHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~--~p--~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      ++|+||||||+|+++|..|++.+  .+|+|||+  ..||.+..  ++  .+  .+....++..++.+.+++.+++++.++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~li~~--~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   77 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKG--IRTGLMGE--RFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ   77 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--CCEEEECS--STTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeC--CCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccC
Confidence            58999999999999999999987  99999975  35666643  11  01  122345677788888888899999884


Q ss_pred             EEc-----------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCC
Q 019876           94 TLG-----------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKS  158 (334)
Q Consensus        94 ~v~-----------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~  158 (334)
                      .+.           ..+.++++ .+.||+||+|||+ .|..|++||.+.   .+++.......             ....
T Consensus        78 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~  143 (310)
T 1fl2_A           78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA-KWRNMNVPGEDQYRTKGVTYCPHCDG-------------PLFK  143 (310)
T ss_dssp             CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHHHHG-------------GGGB
T ss_pred             EEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC-CcCCCCCCChhhcccceeEEeccCcH-------------hhcC
Confidence            431           12344444 4689999999999 488888998752   23433221110             1225


Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR  238 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~  238 (334)
                      +++|+|||+|++|+|+|..|++                    .+ .+|++++|++.+.  ++ +.               
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~~--~~-~~---------------  184 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAG--------------------IV-EHVTLLEFAPEMK--AD-QV---------------  184 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT--------------------TB-SEEEEECSSSSCC--SC-HH---------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--------------------hC-CEEEEEEeCcccC--cc-HH---------------
Confidence            7999999999999999999986                    44 4799999987652  11 11               


Q ss_pred             cCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                                +.+.+.        ...||++++++.+++|.  + +++++.+|.+.+
T Consensus       185 --------------------------~~~~l~--------~~~gv~v~~~~~v~~i~--~-~~~~v~~v~~~~  220 (310)
T 1fl2_A          185 --------------------------LQDKLR--------SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRD  220 (310)
T ss_dssp             --------------------------HHHHHH--------TCTTEEEESSEEEEEEE--E-SSSSEEEEEEEE
T ss_pred             --------------------------HHHHHh--------hCCCeEEecCCceEEEE--c-CCCcEEEEEEEE
Confidence                                      111121        12589999999999998  5 356788888875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.86  E-value=1.2e-21  Score=191.39  Aligned_cols=163  Identities=20%  Similarity=0.265  Sum_probs=114.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhh-cCCCCeEEEEc--------CCCCCcccccc-ccCCCC--------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIID--------RLPTPFGLVRS-GVAPDH--------------------   68 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~-~~~~~~v~vie--------~~~~~gg~~~~-~~~p~~--------------------   68 (334)
                      .++|+||||||||++||..|++ .+  .+|+|||        +...+||.|.+ +|.|.+                    
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~   84 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYG--KRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGW   84 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcC--CeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCc
Confidence            4799999999999999999999 87  9999999        24566776543 443321                    


Q ss_pred             --------cchhHHHH-----------HHHHHhhcC-CcEEEeCeEEc---eEEecc---------cceeccCeEEEecc
Q 019876           69 --------PETKIVIN-----------QFSRVVQHE-RCSFFGNVTLG---SSVSLS---------ELRQLYHVVVLAYG  116 (334)
Q Consensus        69 --------~~~~~~~~-----------~~~~~~~~~-~i~~~~~~~v~---~~v~~~---------~~~~~yd~lIlATG  116 (334)
                              .....+..           .+...+++. +++++.+....   ..+.+.         ...+.||+||||||
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATG  164 (495)
T 2wpf_A           85 EFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATG  164 (495)
T ss_dssp             ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred             ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCC
Confidence                    11112221           223345566 89998886431   234443         23468999999999


Q ss_pred             CCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHH
Q 019876          117 AESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT  196 (334)
Q Consensus       117 s~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~  196 (334)
                      + .|+.|++||.+  .+++..++..    ..         ..+++++|||+|++|+|+|..|++                
T Consensus       165 s-~p~~p~i~G~~--~~~~~~~~~~----~~---------~~~~~vvViGgG~ig~E~A~~l~~----------------  212 (495)
T 2wpf_A          165 S-WPQMPAIPGIE--HCISSNEAFY----LP---------EPPRRVLTVGGGFISVEFAGIFNA----------------  212 (495)
T ss_dssp             E-EECCCCCTTGG--GCEEHHHHTT----CS---------SCCSEEEEECSSHHHHHHHHHHHH----------------
T ss_pred             C-CcCCCCCCCcc--ccccHHHHHh----hh---------hcCCeEEEECCCHHHHHHHHHHHh----------------
Confidence            9 58888999874  3555444331    11         146899999999999999999986                


Q ss_pred             HHhcC---CcceEEEEeecCccccCCC
Q 019876          197 ALEGS---SIRKVYLVGRRGPVQAACT  220 (334)
Q Consensus       197 ~~~~~---~~~~Vtiv~r~~~~~~~~~  220 (334)
                          .   |. +||+++|.+.++..++
T Consensus       213 ----~~~~g~-~Vtlv~~~~~~l~~~d  234 (495)
T 2wpf_A          213 ----YKPPGG-KVTLCYRNNLILRGFD  234 (495)
T ss_dssp             ----HCCTTC-EEEEEESSSSSCTTSC
T ss_pred             ----hCCCCC-eEEEEEcCCccccccC
Confidence                4   55 6999999988765544

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.86  E-value=1.8e-21  Score=188.87  Aligned_cols=165  Identities=16%  Similarity=0.195  Sum_probs=118.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCc---------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHP---------------------------   69 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~---------------------------   69 (334)
                      ..++|+|||||+||+++|..|++.+  .+|+|||+++.+||.|.+ ++.|.+.                           
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~   82 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI   82 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCcc
Confidence            4689999999999999999999997  999999999888876533 3333211                           


Q ss_pred             chhH-----------HHHHHHHHhhcCCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCCCCCccC
Q 019876           70 ETKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL  130 (334)
Q Consensus        70 ~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~~  130 (334)
                      ....           +...+...+++.+++++.+..+.     ..+...++   .+.||+||+|||+ .|..|+++|.+.
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs-~p~~p~~~g~~~  161 (470)
T 1dxl_A           83 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGS-DVKSLPGVTIDE  161 (470)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCE-EECCBTTBCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCC-CCCCCCCCCCCc
Confidence            0111           11123445566789998887542     12333333   4689999999999 588888998766


Q ss_pred             CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEe
Q 019876          131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG  210 (334)
Q Consensus       131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~  210 (334)
                      +++++..++..    ..         ..+++|+|||+|++|+|+|..|++                    .|. +|++++
T Consensus       162 ~~v~~~~~~~~----~~---------~~~~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtli~  207 (470)
T 1dxl_A          162 KKIVSSTGALA----LS---------EIPKKLVVIGAGYIGLEMGSVWGR--------------------IGS-EVTVVE  207 (470)
T ss_dssp             SSEECHHHHTT----CS---------SCCSEEEESCCSHHHHHHHHHHHH--------------------HTC-EEEEEC
T ss_pred             ccEEeHHHhhh----hh---------hcCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEE
Confidence            66776654431    11         146899999999999999999986                    565 699999


Q ss_pred             ecCccccCC
Q 019876          211 RRGPVQAAC  219 (334)
Q Consensus       211 r~~~~~~~~  219 (334)
                      |++.++..+
T Consensus       208 ~~~~~l~~~  216 (470)
T 1dxl_A          208 FASEIVPTM  216 (470)
T ss_dssp             SSSSSSTTS
T ss_pred             cCCcccccc
Confidence            998776443

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.86  E-value=1.4e-20  Score=174.47  Aligned_cols=161  Identities=22%  Similarity=0.252  Sum_probs=117.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc----cCCCC---cchhHHHHHHHHHhhcCCcEE
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSF   89 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~----~~p~~---~~~~~~~~~~~~~~~~~~i~~   89 (334)
                      ...++|+|||||++|+++|..|++.+  .+|+|||+. .+||.+.+.    ..|.+   ....++..++.+++.+.++++
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~   88 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQ--LAPLVFEGT-SFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADL   88 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTT--CCCEEECCS-SCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEE
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence            34579999999999999999999986  999999975 567766441    12333   234567778888888889999


Q ss_pred             EeCeEEce------EE-ecccc-eeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCC
Q 019876           90 FGNVTLGS------SV-SLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKS  158 (334)
Q Consensus        90 ~~~~~v~~------~v-~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~  158 (334)
                      +.+.....      .+ .+.++ .+.||+||+|||+ .|..|++||.+.   .++++.......             +..
T Consensus        89 ~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~-~~~~~~i~g~~~~~~~~~~~~~~~~~~-------------~~~  154 (335)
T 2a87_A           89 RMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGA-AARYLQVPGEQELLGRGVSSCATCDGF-------------FFR  154 (335)
T ss_dssp             ECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCE-EECCCCCTHHHHTBTTTEESCHHHHGG-------------GGT
T ss_pred             EEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCC-CccCCCCCchHhccCCceEEeeccchh-------------hcC
Confidence            88764322      23 33333 4689999999999 588888988642   334433221111             125


Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +++|+|||+|++|+|+|..|++                    .+. +|++++|++.+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~--------------------~g~-~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTR--------------------FAR-SVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTT--------------------TCS-EEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH--------------------hCC-eEEEEEcCCcC
Confidence            7999999999999999999986                    554 79999998765

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.86  E-value=3.2e-21  Score=186.24  Aligned_cols=168  Identities=15%  Similarity=0.218  Sum_probs=115.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc---CCCC-c--chhHHHHHHHHHhhcCCcEEEeCe
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH-P--ETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~---~p~~-~--~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      ++|+|||||++|+++|..|++.+++.+|+|||+++.++. ...++   ..+. .  .+.++...+.+.+++.+++++.+.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~   79 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF-LSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRH   79 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB-CGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc-ccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCC
Confidence            589999999999999999999855699999999875432 11110   0111 0  122222233445566789987776


Q ss_pred             EEc------eEEeccc------ceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCe
Q 019876           94 TLG------SSVSLSE------LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT  161 (334)
Q Consensus        94 ~v~------~~v~~~~------~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~  161 (334)
                      .+.      ..+.+.+      ..+.||+||+|||+ .|+.|++||.+.+++++.+++.....-.       .....+++
T Consensus        80 ~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~~~~~v~~~~~~~~~~~~~-------~~~~~~~~  151 (452)
T 2cdu_A           80 QVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS-KPTVPPIPGIDSSRVYLCKNYNDAKKLF-------EEAPKAKT  151 (452)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTTTSTTEEECSSHHHHHHHH-------HHGGGCSE
T ss_pred             EEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCC-CcCCCCCCCCCCCCEEEeCcHHHHHHHH-------HHhccCCe
Confidence            542      2344322      24689999999999 5888999998777777654432210000       00125789


Q ss_pred             EEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876          162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       162 vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                      ++|||+|++|+|+|..|++                    .|. +|+++++.+.++.
T Consensus       152 vvViGgG~~g~E~A~~l~~--------------------~g~-~Vtlv~~~~~~l~  186 (452)
T 2cdu_A          152 ITIIGSGYIGAELAEAYSN--------------------QNY-NVNLIDGHERVLY  186 (452)
T ss_dssp             EEEECCSHHHHHHHHHHHT--------------------TTC-EEEEEESSSSTTT
T ss_pred             EEEECcCHHHHHHHHHHHh--------------------cCC-EEEEEEcCCchhh
Confidence            9999999999999999986                    565 6999999988765

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.86  E-value=2.4e-21  Score=183.20  Aligned_cols=170  Identities=14%  Similarity=0.158  Sum_probs=119.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc----cccCCCCcchhHHHH-HHHHHhhcCCcEEEeCe
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR----SGVAPDHPETKIVIN-QFSRVVQHERCSFFGNV   93 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~----~~~~p~~~~~~~~~~-~~~~~~~~~~i~~~~~~   93 (334)
                      .++|+|||||+||++||..|++.+++.+|+|+|+++  |..+.    ....+......++.. .+.++++..+++++.+.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   81 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHT   81 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCC
Confidence            478999999999999999999998667899999875  21111    011122222333322 34555667789998765


Q ss_pred             EEc------eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 019876           94 TLG------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ  167 (334)
Q Consensus        94 ~v~------~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~  167 (334)
                      .+.      ..+.+.+..+.||+||+|||+ .|+.|++||.+.+++++.+++..... .      ...+..+++++|||+
T Consensus        82 ~v~~i~~~~~~v~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~~~v~~~~~~~~~~~-~------~~~~~~~~~v~ViGg  153 (384)
T 2v3a_A           82 RVTGIDPGHQRIWIGEEEVRYRDLVLAWGA-EPIRVPVEGDAQDALYPINDLEDYAR-F------RQAAAGKRRVLLLGA  153 (384)
T ss_dssp             CCCEEEGGGTEEEETTEEEECSEEEECCCE-EECCCCCBSTTTTCEEECSSHHHHHH-H------HHHHTTCCEEEEECC
T ss_pred             EEEEEECCCCEEEECCcEEECCEEEEeCCC-CcCCCCCCCcCcCCEEEECCHHHHHH-H------HHhhccCCeEEEECC
Confidence            432      345555556789999999999 58889999987677877666543211 0      001224799999999


Q ss_pred             CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCC
Q 019876          168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC  219 (334)
Q Consensus       168 G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~  219 (334)
                      |.+|+|+|..|.+                    .|. +|+++++.+.++..+
T Consensus       154 G~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~~~~~  184 (384)
T 2v3a_A          154 GLIGCEFANDLSS--------------------GGY-QLDVVAPCEQVMPGL  184 (384)
T ss_dssp             SHHHHHHHHHHHH--------------------TTC-EEEEEESSSSSSTTT
T ss_pred             CHHHHHHHHHHHh--------------------CCC-eEEEEecCcchhhcc
Confidence            9999999999996                    565 699999998776544

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.86  E-value=1.8e-20  Score=171.45  Aligned_cols=158  Identities=19%  Similarity=0.245  Sum_probs=114.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCccccccc----cCCCC---cchhHHHHHHHHHhhcCCcEEEe
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG   91 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~~~----~~p~~---~~~~~~~~~~~~~~~~~~i~~~~   91 (334)
                      ++|+|||||++|+++|..|++.+  . +|+|||++ .+||.+.+.    ..|.+   ....++..++.+.+.+.+++++.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g--~~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~   78 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGG--VKNAVLFEKG-MPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM   78 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CSSEEEECSS-STTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC
T ss_pred             ceEEEECccHHHHHHHHHHHHCC--CCcEEEEcCC-CCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE
Confidence            58999999999999999999987  8 99999995 566665431    12332   23456777888888888999887


Q ss_pred             CeEEce-------EEecccc-eeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCCCC
Q 019876           92 NVTLGS-------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTD  160 (334)
Q Consensus        92 ~~~v~~-------~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k  160 (334)
                      ......       .+...++ .+.||+||+|||+ .|+.|++||.+.   +++++.......             ...++
T Consensus        79 ~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~  144 (311)
T 2q0l_A           79 TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG-SPKRTGIKGESEYWGKGVSTCATCDGF-------------FYKNK  144 (311)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE-EECCCCCBTHHHHBTTTEESCHHHHGG-------------GGTTS
T ss_pred             EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC-CCCCCCCCChhhccCCcEEEeecCChh-------------hcCCC
Confidence            543321       2333333 4689999999999 588888998642   344443222110             12579


Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|+|||+|.+|+|+|..|++                    .+. +|++++|++.+
T Consensus       145 ~v~VvG~G~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~  178 (311)
T 2q0l_A          145 EVAVLGGGDTAVEEAIYLAN--------------------ICK-KVYLIHRRDGF  178 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--------------------TSS-EEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHh--------------------cCC-EEEEEeeCCcc
Confidence            99999999999999999986                    554 69999998765

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.86  E-value=2.1e-21  Score=189.95  Aligned_cols=161  Identities=16%  Similarity=0.282  Sum_probs=109.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCC-------------------------cch-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDH-------------------------PET-   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~-------------------------~~~-   71 (334)
                      .++|+|||||+||++||..|++.+  .+|+|||+++ .||.|.+ ++.|.+                         ... 
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHN--AKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP   78 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence            368999999999999999999986  9999999985 6665432 332211                         011 


Q ss_pred             ----------hHHHHHHHHHhhcCCcEEEeCeEEc---eEEeccc--------------ceeccCeEEEeccCCCCCCCC
Q 019876           72 ----------KIVINQFSRVVQHERCSFFGNVTLG---SSVSLSE--------------LRQLYHVVVLAYGAESDRALG  124 (334)
Q Consensus        72 ----------~~~~~~~~~~~~~~~i~~~~~~~v~---~~v~~~~--------------~~~~yd~lIlATGs~~p~~~~  124 (334)
                                ..+...+...+++.+++++.+..+.   ..+.+.+              ..+.||+||||||+ .|..|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs-~p~~p~  157 (500)
T 1onf_A           79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGN-KPVFPP  157 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCC-CBCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCC-CCCCCC
Confidence                      1122233455567789998875431   1233322              24689999999999 588888


Q ss_pred             CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc
Q 019876          125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR  204 (334)
Q Consensus       125 ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (334)
                      +||.+  .+++..++..    .          ..+++|+|||+|++|+|+|..|++                    .|. 
T Consensus       158 i~G~~--~~~~~~~~~~----~----------~~~~~vvViGgG~ig~E~A~~l~~--------------------~g~-  200 (500)
T 1onf_A          158 VKGIE--NTISSDEFFN----I----------KESKKIGIVGSGYIAVELINVIKR--------------------LGI-  200 (500)
T ss_dssp             CTTGG--GCEEHHHHTT----C----------CCCSEEEEECCSHHHHHHHHHHHT--------------------TTC-
T ss_pred             CCCCC--cccCHHHHhc----c----------CCCCeEEEECChHHHHHHHHHHHH--------------------cCC-
Confidence            99874  3444433321    1          126899999999999999999986                    675 


Q ss_pred             eEEEEeecCccccCCC
Q 019876          205 KVYLVGRRGPVQAACT  220 (334)
Q Consensus       205 ~Vtiv~r~~~~~~~~~  220 (334)
                      +||+++|.+.++..++
T Consensus       201 ~Vtlv~~~~~~l~~~d  216 (500)
T 1onf_A          201 DSYIFARGNRILRKFD  216 (500)
T ss_dssp             EEEEECSSSSSCTTSC
T ss_pred             eEEEEecCCccCcccc
Confidence            6999999988765444

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.86  E-value=6.6e-21  Score=175.39  Aligned_cols=160  Identities=22%  Similarity=0.289  Sum_probs=119.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc-------CCCCc--chhHHHHHHHHHhhcCCcEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCSF   89 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~-------~p~~~--~~~~~~~~~~~~~~~~~i~~   89 (334)
                      .++|+|||||+||+++|..|++.+  .+|+|||+.+.+||.+.+..       .|.+.  ...++..++.+.+.+.++++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQ--ASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTI   84 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcE
Confidence            469999999999999999999986  99999999999888774311       23333  34678888888888889999


Q ss_pred             EeCeEEce---------EEecccceeccCeEEEeccCC--CCCCCCCCCccC-C--CccchhhHHHHhcCCCCCCCCCCC
Q 019876           90 FGNVTLGS---------SVSLSELRQLYHVVVLAYGAE--SDRALGIPGEDL-I--GVHSAREFVWWYNGHPDGKNLSPD  155 (334)
Q Consensus        90 ~~~~~v~~---------~v~~~~~~~~yd~lIlATGs~--~p~~~~ipG~~~-~--~v~~~~~~~~~~~~~~~~~~~~~~  155 (334)
                      +.++.+..         .+...++++.||+||+|||+.  .|..|++||.+. .  +++.         ...+..     
T Consensus        85 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~---------~~~~~~-----  150 (332)
T 3lzw_A           85 CLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY---------FVDDLQ-----  150 (332)
T ss_dssp             ECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES---------SCSCGG-----
T ss_pred             EccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE---------ecCCHH-----
Confidence            87765421         344445557899999999983  377888998753 1  2221         111111     


Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ...+++|+|||+|.+|+|+|..|++                    .+ .+|++++|++.+
T Consensus       151 ~~~~~~v~vvG~g~~~~e~a~~l~~--------------------~~-~~v~~~~~~~~~  189 (332)
T 3lzw_A          151 KFAGRRVAILGGGDSAVDWALMLEP--------------------IA-KEVSIIHRRDKF  189 (332)
T ss_dssp             GGBTCEEEEECSSHHHHHHHHHHTT--------------------TB-SEEEEECSSSSC
T ss_pred             HcCCCEEEEECCCHhHHHHHHHHHh--------------------hC-CeEEEEEecCcC
Confidence            1157999999999999999999986                    45 479999998765

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.86  E-value=4e-21  Score=187.49  Aligned_cols=163  Identities=19%  Similarity=0.277  Sum_probs=114.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhh-cCCCCeEEEEc--------CCCCCcccccc-ccCCCC--------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIID--------RLPTPFGLVRS-GVAPDH--------------------   68 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~-~~~~~~v~vie--------~~~~~gg~~~~-~~~p~~--------------------   68 (334)
                      .++|+|||||++|++||..|++ .+  .+|+|||        +...+||.|.+ +|.|.+                    
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~   80 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHK--KRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW   80 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcC--CEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence            4799999999999999999999 87  9999999        24566776533 443321                    


Q ss_pred             --------cchhHH-----------HHHHHHHhhcC-CcEEEeCeEEc---eEEecc-----c----ceeccCeEEEecc
Q 019876           69 --------PETKIV-----------INQFSRVVQHE-RCSFFGNVTLG---SSVSLS-----E----LRQLYHVVVLAYG  116 (334)
Q Consensus        69 --------~~~~~~-----------~~~~~~~~~~~-~i~~~~~~~v~---~~v~~~-----~----~~~~yd~lIlATG  116 (334)
                              .....+           ...+...+++. +++++.+....   ..+.+.     +    ..+.||+||||||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtG  160 (490)
T 1fec_A           81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATG  160 (490)
T ss_dssp             ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred             ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCC
Confidence                    011111           12334455677 99998886432   234332     2    3468999999999


Q ss_pred             CCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHH
Q 019876          117 AESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT  196 (334)
Q Consensus       117 s~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~  196 (334)
                      + .|..|++||.+  .+++..++..    ..         ..+++++|||+|++|+|+|..|.+                
T Consensus       161 s-~p~~p~i~g~~--~~~~~~~~~~----~~---------~~~~~vvViGgG~ig~E~A~~l~~----------------  208 (490)
T 1fec_A          161 S-WPQHLGIEGDD--LCITSNEAFY----LD---------EAPKRALCVGGGYISIEFAGIFNA----------------  208 (490)
T ss_dssp             E-EECCCCSBTGG--GCBCHHHHTT----CS---------SCCSEEEEECSSHHHHHHHHHHHH----------------
T ss_pred             C-CCCCCCCCCcc--ceecHHHHhh----hh---------hcCCeEEEECCCHHHHHHHHHHHh----------------
Confidence            9 58888899874  3555444331    11         146899999999999999999986                


Q ss_pred             HHhcC---CcceEEEEeecCccccCCC
Q 019876          197 ALEGS---SIRKVYLVGRRGPVQAACT  220 (334)
Q Consensus       197 ~~~~~---~~~~Vtiv~r~~~~~~~~~  220 (334)
                          .   |. +||+++|.+.++..++
T Consensus       209 ----~~~~g~-~Vtlv~~~~~~l~~~d  230 (490)
T 1fec_A          209 ----YKARGG-QVDLAYRGDMILRGFD  230 (490)
T ss_dssp             ----HSCTTC-EEEEEESSSSSSTTSC
T ss_pred             ----hccCcC-eEEEEEcCCCcccccC
Confidence                4   65 6999999988765443

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.86  E-value=3.8e-21  Score=186.73  Aligned_cols=212  Identities=19%  Similarity=0.196  Sum_probs=129.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc----cccccccCCCC-cchhH-------HHHHHHHHhhcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----GLVRSGVAPDH-PETKI-------VINQFSRVVQHER   86 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g----g~~~~~~~p~~-~~~~~-------~~~~~~~~~~~~~   86 (334)
                      +++|+|||||+||++||..|++.+++.+|+|||+++.++    +...+ + ++. ....+       +..+...+.+..+
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYY-V-SGEVSNIESLQATPYNVVRDPEFFRINKD   80 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchh-h-cCCCCchHHhccccchhccCHHHHhhhcC
Confidence            479999999999999999999996669999999987743    11111 1 111 01112       2333344444578


Q ss_pred             cEEEeCeEEc------eEEeccc---c---eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCC
Q 019876           87 CSFFGNVTLG------SSVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNL  152 (334)
Q Consensus        87 i~~~~~~~v~------~~v~~~~---~---~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~  152 (334)
                      ++++.+..+.      ..+.+.+   +   .+.||+||+|||+ .|..|++||.+.+++++.......  +.....    
T Consensus        81 i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~----  155 (472)
T 3iwa_A           81 VEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS-KANRPPVEGMDLAGVTPVTNLDEAEFVQHAIS----  155 (472)
T ss_dssp             CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCSCTTTTSBTEEECCSHHHHHHHHHHCC----
T ss_pred             cEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC-CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh----
Confidence            9988877652      2233322   2   4589999999999 699999999887777655433211  110000    


Q ss_pred             CCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC-CcceEEEEeecCccccCCCHHHHHHHHcCC
Q 019876          153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS-SIRKVYLVGRRGPVQAACTAKELREILGIK  231 (334)
Q Consensus       153 ~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~  231 (334)
                         -..+++++|||+|++|+|+|..|.+                    . +. +|++++|.+.++....++++.+     
T Consensus       156 ---~~~~~~vvViGgG~~g~e~A~~l~~--------------------~~g~-~Vtlv~~~~~~l~~~~~~~~~~-----  206 (472)
T 3iwa_A          156 ---AGEVSKAVIVGGGFIGLEMAVSLAD--------------------MWGI-DTTVVELADQIMPGFTSKSLSQ-----  206 (472)
T ss_dssp             ---TTSCSEEEEECCSHHHHHHHHHHHH--------------------HHCC-EEEEECSSSSSSTTTSCHHHHH-----
T ss_pred             ---cCCCCEEEEECCCHHHHHHHHHHHH--------------------hcCC-cEEEEEccCcccccccCHHHHH-----
Confidence               0147899999999999999999986                    5 55 6999999987765222222221     


Q ss_pred             ceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       232 gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                                      .+.+.+.         +.||+|++++.+++|.  . .+++++ |.+.+
T Consensus       207 --------------------------------~l~~~l~---------~~GV~i~~~~~v~~i~--~-~~~~v~-v~~~~  241 (472)
T 3iwa_A          207 --------------------------------MLRHDLE---------KNDVVVHTGEKVVRLE--G-ENGKVA-RVITD  241 (472)
T ss_dssp             --------------------------------HHHHHHH---------HTTCEEECSCCEEEEE--E-SSSBEE-EEEES
T ss_pred             --------------------------------HHHHHHH---------hcCCEEEeCCEEEEEE--c-cCCeEE-EEEeC
Confidence                                            2222222         5689999999999997  4 345555 55554

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.86  E-value=3.3e-21  Score=186.32  Aligned_cols=162  Identities=14%  Similarity=0.209  Sum_probs=116.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCc-------------------------chhH
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHP-------------------------ETKI   73 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~-------------------------~~~~   73 (334)
                      ++|+||||||||++||..|++.+  .+|+|||+++.+||.+.+ ++.|.+.                         ....
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~   79 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLG--MKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPA   79 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCC--CeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHH
Confidence            68999999999999999999987  999999999778876533 3333210                         1111


Q ss_pred             H-----------HHHHHHHhhcCCcEEEeCeEEc---eEEecc--cceeccCeEEEeccCCCCCCCCCCCccCCCccchh
Q 019876           74 V-----------INQFSRVVQHERCSFFGNVTLG---SSVSLS--ELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR  137 (334)
Q Consensus        74 ~-----------~~~~~~~~~~~~i~~~~~~~v~---~~v~~~--~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~  137 (334)
                      +           ...+.+++++.+++++.+..+.   ..+.+.  ...+.||+||+|||+ .|+.|+++|.+..++++..
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~-~p~~~~~~g~~~~~v~~~~  158 (455)
T 2yqu_A           80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGS-APLIPPWAQVDYERVVTST  158 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCE-EECCCTTBCCCSSSEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCC-CCCCCCCCCCCcCcEechH
Confidence            1           1122445566789998876542   123222  234689999999999 5888888887655677665


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876          138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                      ++..    ..         ..+++|+|||+|.+|+|+|..|++                    .|. +|+++++++.+++
T Consensus       159 ~~~~----~~---------~~~~~vvIiGgG~~g~e~A~~l~~--------------------~g~-~V~lv~~~~~~l~  204 (455)
T 2yqu_A          159 EALS----FP---------EVPKRLIVVGGGVIGLELGVVWHR--------------------LGA-EVIVLEYMDRILP  204 (455)
T ss_dssp             HHTC----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSSCT
T ss_pred             Hhhc----cc---------cCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-EEEEEecCCcccc
Confidence            4431    11         146899999999999999999986                    565 6999999987654


Q ss_pred             C
Q 019876          218 A  218 (334)
Q Consensus       218 ~  218 (334)
                      .
T Consensus       205 ~  205 (455)
T 2yqu_A          205 T  205 (455)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.86  E-value=9.2e-21  Score=175.18  Aligned_cols=202  Identities=22%  Similarity=0.221  Sum_probs=139.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc-------CCCCc--chhHHHHHHHHHhhcCCcEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCSF   89 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~-------~p~~~--~~~~~~~~~~~~~~~~~i~~   89 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||+.+.+||.+....       .|.++  ...++..++.+.+...++++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRG--LSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVY   82 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence            479999999999999999999986  99999999988887764211       12221  24567777878888888988


Q ss_pred             EeCeEEce--------EEecccc-eeccCeEEEeccCC--CCCCCCCCCccC-C--CccchhhHHHHhcCCCCCCCCCCC
Q 019876           90 FGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE--SDRALGIPGEDL-I--GVHSAREFVWWYNGHPDGKNLSPD  155 (334)
Q Consensus        90 ~~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~--~p~~~~ipG~~~-~--~v~~~~~~~~~~~~~~~~~~~~~~  155 (334)
                      +.++.+..        .+...++ .+.||+||+|||+.  .|..+++||.+. .  +++..         ..+.     .
T Consensus        83 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~---------~~~~-----~  148 (335)
T 2zbw_A           83 SLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA---------VKSK-----A  148 (335)
T ss_dssp             EESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESS---------CSCG-----G
T ss_pred             EeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEe---------cCch-----h
Confidence            87755421        2333333 46899999999984  377778888642 1  12111         0010     0


Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEE
Q 019876          156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV  235 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~  235 (334)
                      ...+++|+|||+|++|+|+|..|++                    .+. +|++++|++.+...  + ..           
T Consensus       149 ~~~~~~v~viG~G~~g~e~a~~l~~--------------------~g~-~V~~v~~~~~~~~~--~-~~-----------  193 (335)
T 2zbw_A          149 EFQGKRVLIVGGGDSAVDWALNLLD--------------------TAR-RITLIHRRPQFRAH--E-AS-----------  193 (335)
T ss_dssp             GGTTCEEEEECSSHHHHHHHHHTTT--------------------TSS-EEEEECSSSSCCSC--H-HH-----------
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHh--------------------hCC-EEEEEEcCCccCcc--H-HH-----------
Confidence            1257999999999999999999986                    454 69999998765311  0 00           


Q ss_pred             EEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876          236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                                                .+.+.+.+.         +.||++++++.+++|.  +  ++++.+|.+.
T Consensus       194 --------------------------~~~l~~~l~---------~~gv~v~~~~~v~~i~--~--~~~~~~v~~~  229 (335)
T 2zbw_A          194 --------------------------VKELMKAHE---------EGRLEVLTPYELRRVE--G--DERVRWAVVF  229 (335)
T ss_dssp             --------------------------HHHHHHHHH---------TTSSEEETTEEEEEEE--E--SSSEEEEEEE
T ss_pred             --------------------------HHHHHhccc---------cCCeEEecCCcceeEc--c--CCCeeEEEEE
Confidence                                      112223322         5689999999999998  5  4677788876

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.86  E-value=2.6e-21  Score=186.86  Aligned_cols=162  Identities=12%  Similarity=0.187  Sum_probs=114.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCc---------------------------c
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHP---------------------------E   70 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~---------------------------~   70 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||++ ..||.|.+ +|.|.+.                           .
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~   80 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYG--QKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN   80 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            479999999999999999999986  999999998 56665532 3333210                           0


Q ss_pred             hhH-----------HHHHHHHHhhcCCcEEEeCeEEc---eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccch
Q 019876           71 TKI-----------VINQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA  136 (334)
Q Consensus        71 ~~~-----------~~~~~~~~~~~~~i~~~~~~~v~---~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~  136 (334)
                      ...           +...+...+...+++++.+....   ..+.++...+.||+||||||+ .|..|++||.+  .+++.
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs-~p~~p~i~g~~--~~~~~  157 (450)
T 1ges_A           81 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGG-RPSHPDIPGVE--YGIDS  157 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCE-EECCCCSTTGG--GSBCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCC-CCCCCCCCCcc--ceecH
Confidence            111           11222344566789998875421   234443334689999999999 58888999874  35555


Q ss_pred             hhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      .++..    ..         ..+++++|||+|++|+|+|..|++                    .|. +|+++++.+.++
T Consensus       158 ~~~~~----~~---------~~~~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~l  203 (450)
T 1ges_A          158 DGFFA----LP---------ALPERVAVVGAGYIGVELGGVING--------------------LGA-KTHLFEMFDAPL  203 (450)
T ss_dssp             HHHHH----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSSS
T ss_pred             HHhhh----hh---------hcCCeEEEECCCHHHHHHHHHHHh--------------------cCC-EEEEEEeCCchh
Confidence            44442    11         146899999999999999999986                    565 699999998776


Q ss_pred             cCCC
Q 019876          217 AACT  220 (334)
Q Consensus       217 ~~~~  220 (334)
                      ..++
T Consensus       204 ~~~~  207 (450)
T 1ges_A          204 PSFD  207 (450)
T ss_dssp             TTSC
T ss_pred             hhhh
Confidence            5443

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.86  E-value=8.6e-21  Score=183.41  Aligned_cols=162  Identities=14%  Similarity=0.201  Sum_probs=114.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCc--------------------------ch
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHP--------------------------ET   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~--------------------------~~   71 (334)
                      .++|+|||||+||++||..|++.+  .+|+|||++ .+||.+. +++.|.+.                          ..
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   79 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF   79 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            478999999999999999999997  999999998 5666542 23222110                          01


Q ss_pred             hH-----------HHHHHHHHhhcCCcEEEeCeEEc-----eEEecccc--eeccCeEEEeccCCCCCCCCCCCccCCCc
Q 019876           72 KI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV  133 (334)
Q Consensus        72 ~~-----------~~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~--~~~yd~lIlATGs~~p~~~~ipG~~~~~v  133 (334)
                      ..           +...+...+++.+++++.+..+.     ..+...++  .+.||+||+|||+ .|..|+++|.+.. +
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs-~p~~~~~~g~~~~-v  157 (455)
T 1ebd_A           80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGS-RPIELPNFKFSNR-I  157 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCE-EECCBTTBCCCSS-E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCC-CCCCCCCCCccce-E
Confidence            11           22233456677899998887642     12333333  4689999999999 5888888886543 5


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++..++..    ..         ..+++|+|||+|++|+|+|..|++                    .|. +|+++++++
T Consensus       158 ~~~~~~~~----~~---------~~~~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~  203 (455)
T 1ebd_A          158 LDSTGALN----LG---------EVPKSLVVIGGGYIGIELGTAYAN--------------------FGT-KVTILEGAG  203 (455)
T ss_dssp             ECHHHHHT----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSS
T ss_pred             ecHHHHhc----cc---------cCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEEcCC
Confidence            55544331    11         146899999999999999999986                    675 699999998


Q ss_pred             ccccCC
Q 019876          214 PVQAAC  219 (334)
Q Consensus       214 ~~~~~~  219 (334)
                      .++..+
T Consensus       204 ~~l~~~  209 (455)
T 1ebd_A          204 EILSGF  209 (455)
T ss_dssp             SSSTTS
T ss_pred             cccccc
Confidence            776443

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.85  E-value=3.6e-21  Score=187.38  Aligned_cols=172  Identities=15%  Similarity=0.170  Sum_probs=114.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-c--ccccCCCCcchhHHHHHHHHHh-hcCCcEEEeCeE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-V--RSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVT   94 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~--~~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~   94 (334)
                      +++|+|||||+||++||..|++.+++.+|+|||+++..+.. +  .+-.........++..+..+.+ +..+++++.+..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~  115 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE  115 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence            47999999999999999999997556999999998765321 1  0000011111222222222333 455899988765


Q ss_pred             Ec------eEEeccc---c---eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCCCCCCCCCC
Q 019876           95 LG------SSVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTD  160 (334)
Q Consensus        95 v~------~~v~~~~---~---~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k  160 (334)
                      +.      ..+.+..   +   .+.||+||+|||+ .|+.|++||.+.+++++..++...  +.....       -..++
T Consensus       116 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~-------~~~~~  187 (480)
T 3cgb_A          116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV-RPVMPEWEGRDLQGVHLLKTIPDAERILKTLE-------TNKVE  187 (480)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCBTTTSBTEECCSSHHHHHHHHHHHH-------SSCCC
T ss_pred             EEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC-cccCCCCCCccCCCEEEeCCHHHHHHHHHHhh-------hcCCC
Confidence            42      2343332   3   4689999999999 588899999877777765433221  110000       01579


Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC  219 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~  219 (334)
                      +|+|||+|++|+|+|..|.+                    .|. +|+++++++.++..+
T Consensus       188 ~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~l~~~  225 (480)
T 3cgb_A          188 DVTIIGGGAIGLEMAETFVE--------------------LGK-KVRMIERNDHIGTIY  225 (480)
T ss_dssp             EEEEECCHHHHHHHHHHHHH--------------------TTC-EEEEECCGGGTTSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh--------------------cCC-eEEEEEeCCchhhcC
Confidence            99999999999999999986                    565 699999998775433

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.85  E-value=4.2e-21  Score=186.07  Aligned_cols=162  Identities=16%  Similarity=0.207  Sum_probs=114.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCC--------------------------cch
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDH--------------------------PET   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~--------------------------~~~   71 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||++ .+||.|.+ +|.|.+                          ...
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   80 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFG--KRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDW   80 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCC--CcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence            579999999999999999999986  999999998 56665432 322211                          011


Q ss_pred             hH-----------HHHHHHHHhhcCCcEEEeCeEEc---eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchh
Q 019876           72 KI-----------VINQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR  137 (334)
Q Consensus        72 ~~-----------~~~~~~~~~~~~~i~~~~~~~v~---~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~  137 (334)
                      ..           +...+...+...+++++.+....   ..+.++...+.||+||||||+ .|..|++||.+  .+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs-~p~~p~i~G~~--~~~~~~  157 (463)
T 2r9z_A           81 PRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGG-RPIVPRLPGAE--LGITSD  157 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCE-EECCCSCTTGG--GSBCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCC-CCCCCCCCCcc--ceecHH
Confidence            11           11223344566789998876531   234443335689999999999 58888999874  345554


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876          138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                      ++..    ..         ..+++|+|||+|++|+|+|..|++                    .|. +|+++++++.++.
T Consensus       158 ~~~~----~~---------~~~~~vvVvGgG~~g~e~A~~l~~--------------------~G~-~Vtlv~~~~~~l~  203 (463)
T 2r9z_A          158 GFFA----LQ---------QQPKRVAIIGAGYIGIELAGLLRS--------------------FGS-EVTVVALEDRLLF  203 (463)
T ss_dssp             HHHH----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSSST
T ss_pred             HHhh----hh---------ccCCEEEEECCCHHHHHHHHHHHh--------------------cCC-EEEEEEcCCcccc
Confidence            4432    11         146899999999999999999986                    675 6999999987765


Q ss_pred             CCC
Q 019876          218 ACT  220 (334)
Q Consensus       218 ~~~  220 (334)
                      .++
T Consensus       204 ~~~  206 (463)
T 2r9z_A          204 QFD  206 (463)
T ss_dssp             TSC
T ss_pred             ccC
Confidence            444

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.85  E-value=7.9e-21  Score=184.77  Aligned_cols=162  Identities=17%  Similarity=0.225  Sum_probs=113.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCC--------------------------cch
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH--------------------------PET   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~--------------------------~~~   71 (334)
                      .++|+||||||+|++||..|++.+  .+|+|||++ ..||.|. .++.|.+                          ...
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G--~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELG--ARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW   96 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            579999999999999999999997  999999987 4565532 2332211                          011


Q ss_pred             h-----------HHHHHHHHHhhcCCcEEEeCeEEc-----eEEecccceeccCeEEEeccCCCCCCC---CCCCccCCC
Q 019876           72 K-----------IVINQFSRVVQHERCSFFGNVTLG-----SSVSLSELRQLYHVVVLAYGAESDRAL---GIPGEDLIG  132 (334)
Q Consensus        72 ~-----------~~~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~~~~yd~lIlATGs~~p~~~---~ipG~~~~~  132 (334)
                      .           .+...+...++..+++++.+....     ..+..+..++.||+||||||+ .|..|   ++||.+  .
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~-~p~~p~~~~i~G~~--~  173 (478)
T 3dk9_A           97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGG-MPSTPHESQIPGAS--L  173 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCE-EECCCCTTTSTTGG--G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCC-CCCCCCcCCCCCCc--e
Confidence            1           122233445566789988776431     234444445789999999999 58888   899875  2


Q ss_pred             ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      +.+..++..    ..         ..+++++|||+|++|+|+|..|++                    .|. +||+++|.
T Consensus       174 ~~~~~~~~~----~~---------~~~~~vvViGgG~~g~E~A~~l~~--------------------~g~-~Vtlv~~~  219 (478)
T 3dk9_A          174 GITSDGFFQ----LE---------ELPGRSVIVGAGYIAVEMAGILSA--------------------LGS-KTSLMIRH  219 (478)
T ss_dssp             SBCHHHHTT----CC---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSS
T ss_pred             eEchHHhhc----hh---------hcCccEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEEeC
Confidence            333333321    11         146899999999999999999986                    665 69999999


Q ss_pred             CccccCCC
Q 019876          213 GPVQAACT  220 (334)
Q Consensus       213 ~~~~~~~~  220 (334)
                      +.++..++
T Consensus       220 ~~~l~~~d  227 (478)
T 3dk9_A          220 DKVLRSFD  227 (478)
T ss_dssp             SSSCTTSC
T ss_pred             CccccccC
Confidence            88765444

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=6.2e-21  Score=185.64  Aligned_cols=163  Identities=15%  Similarity=0.170  Sum_probs=113.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCC----------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDH----------------------------   68 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~----------------------------   68 (334)
                      ..++|+|||||++|++||..|++.+  .+|+|||++ ..||.|.+ +|.|.+                            
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   86 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYG--AKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK   86 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTS--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCC--CcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence            3579999999999999999999986  999999997 46665432 221210                            


Q ss_pred             ----cchhHH-----------HHHHHHHhhcCCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCC-C
Q 019876           69 ----PETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRAL-G  124 (334)
Q Consensus        69 ----~~~~~~-----------~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~-~  124 (334)
                          .....+           ...+...++..+++++.+....     ..+...++   .+.||+||||||+ .|..| +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~~  165 (479)
T 2hqm_A           87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGG-KAIFPEN  165 (479)
T ss_dssp             GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCE-EECCCTT
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCC-CCCCCCC
Confidence                011111           1223345566789988775431     12333333   4689999999999 58888 8


Q ss_pred             CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc
Q 019876          125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR  204 (334)
Q Consensus       125 ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (334)
                      +||.+  .+++..++..    ..         ..+++++|||+|++|+|+|..|++                    .|. 
T Consensus       166 i~g~~--~~~~~~~~~~----l~---------~~~~~vvViGgG~ig~E~A~~l~~--------------------~g~-  209 (479)
T 2hqm_A          166 IPGFE--LGTDSDGFFR----LE---------EQPKKVVVVGAGYIGIELAGVFHG--------------------LGS-  209 (479)
T ss_dssp             STTGG--GSBCHHHHHH----CS---------SCCSEEEEECSSHHHHHHHHHHHH--------------------TTC-
T ss_pred             CCCcc--cccchHHHhc----cc---------ccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-
Confidence            99874  2455544432    10         146899999999999999999986                    565 


Q ss_pred             eEEEEeecCccccCCC
Q 019876          205 KVYLVGRRGPVQAACT  220 (334)
Q Consensus       205 ~Vtiv~r~~~~~~~~~  220 (334)
                      +|++++|.+.++..++
T Consensus       210 ~Vtlv~~~~~~l~~~d  225 (479)
T 2hqm_A          210 ETHLVIRGETVLRKFD  225 (479)
T ss_dssp             EEEEECSSSSSCTTSC
T ss_pred             ceEEEEeCCccccccC
Confidence            6999999988765443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.85  E-value=2e-20  Score=189.15  Aligned_cols=201  Identities=20%  Similarity=0.189  Sum_probs=145.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ..++|+|||||+||++||..|++.+  .+|+|||+++.+||.+.+ ...|++....++..++..++++.+++++.++.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  449 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT  449 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEec
Confidence            4689999999999999999999987  999999999888888765 3457665555666777777888899999887653


Q ss_pred             eEEeccccee-ccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHH
Q 019876           97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA  175 (334)
Q Consensus        97 ~~v~~~~~~~-~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A  175 (334)
                      .      ... .||+||||||+ .|+.|++||.+..++++..+++.   .         ....+++|+|||||++|+|+|
T Consensus       450 ~------~~~~~~d~lviAtG~-~p~~~~i~G~~~~~v~~~~~~l~---~---------~~~~~~~VvVIGgG~~g~E~A  510 (671)
T 1ps9_A          450 A------DQLQAFDETILASGI-VPRTPPIDGIDHPKVLSYLDVLR---D---------KAPVGNKVAIIGCGGIGFDTA  510 (671)
T ss_dssp             S------SSSCCSSEEEECCCE-EECCCCCBTTTSTTEEEHHHHHT---S---------CCCCCSEEEEECCHHHHHHHH
T ss_pred             H------HHhhcCCEEEEccCC-CcCCCCCCCCCCCcEeeHHHHhh---C---------CCCCCCeEEEECCChhHHHHH
Confidence            2      123 89999999999 69999999988778887655442   1         123689999999999999999


Q ss_pred             HHHccCCcccccccccHHHHHHH------------------hcCCcceEEEEeecCcccc----CCCHHHHHHHHcCCce
Q 019876          176 RILLRPTEELATTDIASYAWTAL------------------EGSSIRKVYLVGRRGPVQA----ACTAKELREILGIKNL  233 (334)
Q Consensus       176 ~~L~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~Vtiv~r~~~~~~----~~~~~~~~~~l~~~gv  233 (334)
                      ..|++...+...  ....+...+                  -.....+|+++++.+..+.    +.....+.+.|+..||
T Consensus       511 ~~l~~~G~~vtv--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV  588 (671)
T 1ps9_A          511 MYLSQPGESTSQ--NIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGV  588 (671)
T ss_dssp             HHHTCCSSCGGG--CHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCccc--chhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCC
Confidence            999974432210  000000000                  0012257999998765432    2234566788888999


Q ss_pred             EEEEccCc
Q 019876          234 YVHIREDD  241 (334)
Q Consensus       234 ~~~~~~~~  241 (334)
                      +++.+...
T Consensus       589 ~v~~~~~v  596 (671)
T 1ps9_A          589 KMIPGVSY  596 (671)
T ss_dssp             EEECSCEE
T ss_pred             EEEeCcEE
Confidence            99987643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.85  E-value=6.9e-21  Score=188.76  Aligned_cols=193  Identities=15%  Similarity=0.153  Sum_probs=134.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc---CCCC-cchh-HHHHHHHHHhhcCCcEEEeCe
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH-PETK-IVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~---~p~~-~~~~-~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      +++|+|||||+||++||..|++.+++.+|+|||+++.++. ...++   .++. .... .+..+...+.++.+++++.+.
T Consensus         1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   79 (565)
T 3ntd_A            1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSF-ANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKH   79 (565)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB-CGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccc-cccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECC
Confidence            3699999999999999999999976799999999987541 11111   0111 1111 122333444455789988877


Q ss_pred             EEc------eEEeccc---c---eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHH--hcCCCCCCCCCCCCCCC
Q 019876           94 TLG------SSVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKST  159 (334)
Q Consensus        94 ~v~------~~v~~~~---~---~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~  159 (334)
                      .+.      ..+.+.+   +   .+.||+||||||+ .|+.|++||.+.+++++..++...  +....       ....+
T Consensus        80 ~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~-------~~~~~  151 (565)
T 3ntd_A           80 EVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVPPIPGVDNPLTHSLRNIPDMDRILQTI-------QMNNV  151 (565)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTCCSTTEECCSSHHHHHHHHHHH-------HHTTC
T ss_pred             EEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCC-CCCCCCCCCCCCCCEEEeCCHHHHHHHHHHH-------hhCCC
Confidence            663      2233322   2   4589999999999 699999999987777765543321  11000       00256


Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEEE
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYVH  236 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~  236 (334)
                      ++|+|||+|++|+|+|..|++                    .|. +|++++|++.++..++.   ..+.+.++..||+++
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~  210 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHH--------------------LGI-KTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLR  210 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh--------------------cCC-cEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEE
Confidence            899999999999999999986                    565 69999999988887665   456677888999999


Q ss_pred             EccCc
Q 019876          237 IREDD  241 (334)
Q Consensus       237 ~~~~~  241 (334)
                      ++...
T Consensus       211 ~~~~v  215 (565)
T 3ntd_A          211 LGTAL  215 (565)
T ss_dssp             ETCCE
T ss_pred             eCCeE
Confidence            87543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.85  E-value=1.1e-20  Score=197.93  Aligned_cols=202  Identities=19%  Similarity=0.201  Sum_probs=145.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc---cCCCCcchhHHHHHHHHHhhc-CCcEEEeCeE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG---VAPDHPETKIVINQFSRVVQH-ERCSFFGNVT   94 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~---~~p~~~~~~~~~~~~~~~~~~-~~i~~~~~~~   94 (334)
                      .++|+||||||||++||.+|++.+  ++|+|||+++.+||.+.+.   ..++. ...+....+.+.+.. .+++++.++.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G--~~V~lie~~~~~GG~~~~~~k~~i~~~-~~~~~~~~~~~~l~~~~~v~~~~~~~  204 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSG--ARVMLLDERAEAGGTLLDTAGEQIDGM-DSSAWIEQVTSELAEAEETTHLQRTT  204 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGGGSSCCEETTE-EHHHHHHHHHHHHHHSTTEEEESSEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCCCceeccCCccccCCC-CHHHHHHHHHHHHhhcCCcEEEeCCE
Confidence            468999999999999999999987  9999999998888877641   11221 123444444444444 4899888765


Q ss_pred             EceE---------------Eec--------cc-ceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCC
Q 019876           95 LGSS---------------VSL--------SE-LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK  150 (334)
Q Consensus        95 v~~~---------------v~~--------~~-~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~  150 (334)
                      +...               +.+        .+ ..+.||+||||||+ .|+.|++||.+.+++++..++...+....   
T Consensus       205 V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs-~p~~~~ipG~~~~gv~~~~~~~~~l~~~~---  280 (965)
T 2gag_A          205 VFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA-HERPIVFENNDRPGIMLAGAVRSYLNRYG---  280 (965)
T ss_dssp             EEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE-EECCCCCBTCCSTTEEEHHHHHHHHHTTC---
T ss_pred             EEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCC-ccCCCCCCCCCCCCEEEhHHHHHHHHhcC---
Confidence            4210               011        11 13589999999999 58999999999999998876654333211   


Q ss_pred             CCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcC
Q 019876          151 NLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGI  230 (334)
Q Consensus       151 ~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~  230 (334)
                           ...+++|+|||+|++|+|+|..|++                    .|.+ |+|+++++.+...            
T Consensus       281 -----~~~gk~vvViGgG~~g~E~A~~L~~--------------------~G~~-Vtvv~~~~~~~~~------------  322 (965)
T 2gag_A          281 -----VRAGARIAVATTNDSAYELVRELAA--------------------TGGV-VAVIDARSSISAA------------  322 (965)
T ss_dssp             -----EESCSSEEEEESSTTHHHHHHHHGG--------------------GTCC-SEEEESCSSCCHH------------
T ss_pred             -----CCCCCeEEEEcCCHHHHHHHHHHHH--------------------cCCc-EEEEECCCccchh------------
Confidence                 1257899999999999999999996                    6775 9999998765310            


Q ss_pred             CceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876          231 KNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       231 ~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                                                     .+.+             .+.||+|++++.+++|.  +++++++++|.+.
T Consensus       323 -------------------------------~~~l-------------~~~GV~v~~~~~v~~i~--~~~~~~v~~v~~~  356 (965)
T 2gag_A          323 -------------------------------AAQA-------------VADGVQVISGSVVVDTE--ADENGELSAIVVA  356 (965)
T ss_dssp             -------------------------------HHHH-------------HHTTCCEEETEEEEEEE--ECTTSCEEEEEEE
T ss_pred             -------------------------------HHHH-------------HhCCeEEEeCCEeEEEe--ccCCCCEEEEEEE
Confidence                                           0111             14589999999999998  5115678888887


Q ss_pred             E
Q 019876          311 K  311 (334)
Q Consensus       311 ~  311 (334)
                      +
T Consensus       357 ~  357 (965)
T 2gag_A          357 E  357 (965)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.85  E-value=6.7e-20  Score=168.45  Aligned_cols=159  Identities=18%  Similarity=0.170  Sum_probs=113.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc----cCCCC--cchhHHHHHHHHHhhcCCcEEEeC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH--PETKIVINQFSRVVQHERCSFFGN   92 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~----~~p~~--~~~~~~~~~~~~~~~~~~i~~~~~   92 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||+. .+||.+.+.    ..|++  ....++..++.+.+.+.+++++..
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   92 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSG--FSVAILDKA-VAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGV   92 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-STTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeCC-CCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEe
Confidence            468999999999999999999987  899999995 566665431    12332  223466777777888889988775


Q ss_pred             eEEce-------EEecccceeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCCCCeE
Q 019876           93 VTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA  162 (334)
Q Consensus        93 ~~v~~-------~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~v  162 (334)
                      .....       .+..++..+.||+||+|||+ .|+.|++||.+.   .+++.......             ....+++|
T Consensus        93 ~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~-~~~~~~i~g~~~~~~~~~~~~~~~~~-------------~~~~~~~v  158 (319)
T 3cty_A           93 EVRSIKKTQGGFDIETNDDTYHAKYVIITTGT-THKHLGVKGESEYFGKGTSYCSTCDG-------------YLFKGKRV  158 (319)
T ss_dssp             CEEEEEEETTEEEEEESSSEEEEEEEEECCCE-EECCCCCBTTTTTBTTTEESCHHHHG-------------GGGBTSEE
T ss_pred             eEEEEEEeCCEEEEEECCCEEEeCEEEECCCC-CcccCCCCChHHhCCceEEEEEecch-------------hhcCCCeE
Confidence            43221       23333345689999999999 588888888642   34433222111             01257999


Q ss_pred             EEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       163 vVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|||+|.+|+|+|..|++                    .+ .+|++++|++.+
T Consensus       159 ~viG~G~~g~e~a~~l~~--------------------~g-~~V~~i~~~~~~  190 (319)
T 3cty_A          159 VTIGGGNSGAIAAISMSE--------------------YV-KNVTIIEYMPKY  190 (319)
T ss_dssp             EEECCSHHHHHHHHHHTT--------------------TB-SEEEEECSSSSC
T ss_pred             EEECCCHHHHHHHHHHHh--------------------hC-CcEEEEEcCCcc
Confidence            999999999999999996                    45 479999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.85  E-value=8.5e-21  Score=183.86  Aligned_cols=162  Identities=17%  Similarity=0.222  Sum_probs=114.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCC--------------------------cch
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDH--------------------------PET   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~--------------------------~~~   71 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||+ +.+||.|.+ ++.|.+                          ...
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALG--KKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDW   81 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTT--CCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCC--CEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCH
Confidence            479999999999999999999997  99999999 567775432 322211                          011


Q ss_pred             h-----------HHHHHHHHHhhcCCcEEEeCeEE---ceEEec--ccceeccCeEEEeccCCCCC-CCCCCCccCCCcc
Q 019876           72 K-----------IVINQFSRVVQHERCSFFGNVTL---GSSVSL--SELRQLYHVVVLAYGAESDR-ALGIPGEDLIGVH  134 (334)
Q Consensus        72 ~-----------~~~~~~~~~~~~~~i~~~~~~~v---~~~v~~--~~~~~~yd~lIlATGs~~p~-~~~ipG~~~~~v~  134 (334)
                      .           .+...+..++...+++++.+...   ...+.+  +...+.||++|+|||+ .|. .|++||.+  .++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~-~p~~~p~i~G~~--~~~  158 (463)
T 4dna_A           82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGG-HPSPHDALPGHE--LCI  158 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCE-EECCCTTSTTGG--GCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCC-CcccCCCCCCcc--ccc
Confidence            1           22233445556678998877543   123444  3334689999999999 588 88999875  244


Q ss_pred             chhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      +..++..    ..         ..+++++|||+|++|+|+|..|.+                    .|. +|+++++.+.
T Consensus       159 ~~~~~~~----~~---------~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g~-~Vt~v~~~~~  204 (463)
T 4dna_A          159 TSNEAFD----LP---------ALPESILIAGGGYIAVEFANIFHG--------------------LGV-KTTLIYRGKE  204 (463)
T ss_dssp             CHHHHTT----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSS
T ss_pred             cHHHHhh----hh---------cCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEEcCCc
Confidence            4443321    11         147899999999999999999986                    565 6999999987


Q ss_pred             cccCCC
Q 019876          215 VQAACT  220 (334)
Q Consensus       215 ~~~~~~  220 (334)
                      ++..++
T Consensus       205 ~l~~~~  210 (463)
T 4dna_A          205 ILSRFD  210 (463)
T ss_dssp             SSTTSC
T ss_pred             cccccC
Confidence            764443

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.84  E-value=1.5e-20  Score=182.15  Aligned_cols=162  Identities=16%  Similarity=0.219  Sum_probs=112.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCc-------------------------chh
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHP-------------------------ETK   72 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~-------------------------~~~   72 (334)
                      .++|+|||||+||++||..|++.+  .+|+|||+++ .||.|. .++.|.+.                         ...
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g--~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLG--LKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence            478999999999999999999987  8999999987 666542 24333211                         111


Q ss_pred             HHHH-----------HHHHHhhcCCcEEEeCeEEc---eEEecccceeccCeEEEeccCCCCCCCC-CCCccCCCccchh
Q 019876           73 IVIN-----------QFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALG-IPGEDLIGVHSAR  137 (334)
Q Consensus        73 ~~~~-----------~~~~~~~~~~i~~~~~~~v~---~~v~~~~~~~~yd~lIlATGs~~p~~~~-ipG~~~~~v~~~~  137 (334)
                      .+..           .+..++++.+++++.+..+.   ..+.+....+.||+||||||+ .|+.|+ +||.  ..+++..
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs-~p~~p~gi~~~--~~v~~~~  159 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGS-EPLELKGFPFG--EDVWDST  159 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCE-EECCBTTBCCS--SSEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCC-CCCCCCCCCCC--CcEEcHH
Confidence            1111           12345666799998886542   234443334689999999999 587775 7762  2466554


Q ss_pred             hHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876          138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                      ++..    ..+        ..+++++|||+|++|+|+|..|++                    .|. +|+++++.+.++.
T Consensus       160 ~~~~----l~~--------~~~~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          160 RALK----VEE--------GLPKRLLVIGGGAVGLELGQVYRR--------------------LGA-EVTLIEYMPEILP  206 (464)
T ss_dssp             HHTC----GGG--------CCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSSST
T ss_pred             HHHh----hhh--------hcCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEEcCCcccc
Confidence            4431    100        035899999999999999999986                    675 6999999987764


Q ss_pred             CC
Q 019876          218 AC  219 (334)
Q Consensus       218 ~~  219 (334)
                      .+
T Consensus       207 ~~  208 (464)
T 2eq6_A          207 QG  208 (464)
T ss_dssp             TS
T ss_pred             cc
Confidence            33

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.84  E-value=1.5e-21  Score=183.74  Aligned_cols=187  Identities=19%  Similarity=0.233  Sum_probs=127.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc---ccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG---LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg---~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ..+++||||||||++||..|++.+   +|+|||+++.++-   .+.. ...+....+++..+..+++++.+++++.++.+
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g---~V~lie~~~~~~~~~~~l~~-~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v   83 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSH-YIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEA   83 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS---EEEEECSSSSCCCCSTTHHH-HHTTSSCGGGGCSSCHHHHHHHTEEEECSCCE
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC---CEEEEECCCCCccccchhHH-HHhCCCCHHHhccCCHHHHHhCCcEEEECCEE
Confidence            469999999999999999998874   9999999875321   1111 11122222333333445566778999888543


Q ss_pred             c------eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCH
Q 019876           96 G------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN  169 (334)
Q Consensus        96 ~------~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~  169 (334)
                      .      ..+..+..++.||+||||||+ .|+.|++||  .+++++..++..... .      ...+..+++++|||+|+
T Consensus        84 ~~id~~~~~V~~~g~~~~~d~lViATGs-~p~~p~i~G--~~~v~~~~~~~~~~~-l------~~~~~~~~~vvViGgG~  153 (367)
T 1xhc_A           84 KLIDRGRKVVITEKGEVPYDTLVLATGA-RAREPQIKG--KEYLLTLRTIFDADR-I------KESIENSGEAIIIGGGF  153 (367)
T ss_dssp             EEEETTTTEEEESSCEEECSEEEECCCE-EECCCCSBT--GGGEECCCSHHHHHH-H------HHHHHHHSEEEEEECSH
T ss_pred             EEEECCCCEEEECCcEEECCEEEECCCC-CCCCCCCCC--cCCEEEEcCHHHHHH-H------HHHhhcCCcEEEECCCH
Confidence            2      134422334689999999999 688899998  345665433322110 0      00011358999999999


Q ss_pred             HHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEccCc
Q 019876          170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIREDD  241 (334)
Q Consensus       170 ~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~~  241 (334)
                      +|+|+|..|++                    .|. +||+++|.+.++. +++   +.+.+.|+..||+++++...
T Consensus       154 ~g~E~A~~l~~--------------------~g~-~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v  206 (367)
T 1xhc_A          154 IGLELAGNLAE--------------------AGY-HVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSEL  206 (367)
T ss_dssp             HHHHHHHHHHH--------------------TTC-EEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCE
T ss_pred             HHHHHHHHHHh--------------------CCC-EEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence            99999999986                    675 6999999988877 665   45677788899999987543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.84  E-value=2.1e-20  Score=178.26  Aligned_cols=165  Identities=20%  Similarity=0.240  Sum_probs=114.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc-ccccc--ccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GLVRS--GVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g-g~~~~--~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ..++|+|||||+||+++|..|++.+++.+|+|||+++..+ ..+..  .+..+.. .+.+  .+. ++++.+++++.++.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-~~~~~~v~~~~~~~   81 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGD-AEKI--RLD-CKRAPEVEWLLGVT   81 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCC-GGGS--BCC-CTTSCSCEEEETCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCc-hhhh--hHH-HHHHCCCEEEcCCE
Confidence            4579999999999999999999998555799999987532 11110  0000000 0000  011 45677899988864


Q ss_pred             Ec------eEEecccc-eeccCeEEEeccCCCCCCCCC-CCccCCCccchhhHHHH--hcCCCCCCCCCCCCCCCCeEEE
Q 019876           95 LG------SSVSLSEL-RQLYHVVVLAYGAESDRALGI-PGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTAVI  164 (334)
Q Consensus        95 v~------~~v~~~~~-~~~yd~lIlATGs~~p~~~~i-pG~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~vvV  164 (334)
                      +.      ..+.+.++ .+.||+||+|||+ .|+.|++ ||.+ +++++.++....  +..         .+..+++|+|
T Consensus        82 v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~i~~G~~-~~v~~~~~~~~~~~l~~---------~~~~~~~vvV  150 (408)
T 2gqw_A           82 AQSFDPQAHTVALSDGRTLPYGTLVLATGA-APRALPTLQGAT-MPVHTLRTLEDARRIQA---------GLRPQSRLLI  150 (408)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCCE-EECCCGGGTTCS-SCEEECCSHHHHHHHHT---------TCCTTCEEEE
T ss_pred             EEEEECCCCEEEECCCCEEECCEEEECCCC-CCCCCCccCCCC-CcEEEECCHHHHHHHHH---------HhhcCCeEEE
Confidence            32      23555444 4689999999999 5888899 9987 777654433221  111         1335799999


Q ss_pred             EcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC
Q 019876          165 LGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA  218 (334)
Q Consensus       165 IG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~  218 (334)
                      ||+|++|+|+|..|++                    .|. +||++++.+.++..
T Consensus       151 iGgG~~g~E~A~~l~~--------------------~g~-~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          151 VGGGVIGLELAATART--------------------AGV-HVSLVETQPRLMSR  183 (408)
T ss_dssp             ECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSSSSSTT
T ss_pred             ECCCHHHHHHHHHHHh--------------------CCC-EEEEEEeCCccccc
Confidence            9999999999999986                    565 69999999887654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.84  E-value=5.7e-21  Score=183.82  Aligned_cols=187  Identities=16%  Similarity=0.231  Sum_probs=128.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc---cccc---ccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG---LVRS---GVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg---~~~~---~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      .|||||||||||++||..|++.+++.+|+|||+++..+.   .+.+   +.....  ...+......++++.+++++.+.
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~   78 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDR--RYALAYTPEKFYDRKQITVKTYH   78 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCG--GGTBCCCHHHHHHHHCCEEEETE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccch--hhhhhcCHHHHHHhcCCEEEeCC
Confidence            479999999999999999999987889999999876432   1111   111110  00111122345566789988876


Q ss_pred             EEc------eEEecc------cceeccCeEEEeccCCCCCCCCCCCccCC---CccchhhHHHHhcCCCCCCCCCCCCCC
Q 019876           94 TLG------SSVSLS------ELRQLYHVVVLAYGAESDRALGIPGEDLI---GVHSAREFVWWYNGHPDGKNLSPDLKS  158 (334)
Q Consensus        94 ~v~------~~v~~~------~~~~~yd~lIlATGs~~p~~~~ipG~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~  158 (334)
                      .+.      +.+.+.      ..+..||+||||||+ .|+.|++||....   ++.++..+.....           ...
T Consensus        79 ~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs-~p~~p~i~g~~~~~~~~~~~~~~l~~~~~-----------~~~  146 (437)
T 4eqs_A           79 EVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA-SANSLGFESDITFTLRNLEDTDAIDQFIK-----------ANQ  146 (437)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCE-EECCCCCCCTTEECCSSHHHHHHHHHHHH-----------HHT
T ss_pred             eEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCC-ccccccccCceEEeeccHHHHHHHHHhhh-----------ccC
Confidence            542      122221      123589999999999 5888888885421   1111111111111           014


Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEE
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYV  235 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~  235 (334)
                      +++++|||||++|+|+|..+++                    .|. +||+++|+++++..+++   +.+.+.++..||++
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~--------------------~g~-~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i  205 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYE--------------------RGL-HPTLIHRSDKINKLMDADMNQPILDELDKREIPY  205 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--------------------HTC-EEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCE
T ss_pred             CcEEEEECCccchhhhHHHHHh--------------------cCC-cceeeeeeccccccccchhHHHHHHHhhccceEE
Confidence            6899999999999999999986                    565 69999999999887776   67888889999999


Q ss_pred             EEccCc
Q 019876          236 HIREDD  241 (334)
Q Consensus       236 ~~~~~~  241 (334)
                      +++...
T Consensus       206 ~~~~~v  211 (437)
T 4eqs_A          206 RLNEEI  211 (437)
T ss_dssp             EESCCE
T ss_pred             EeccEE
Confidence            987654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.84  E-value=2.9e-20  Score=180.68  Aligned_cols=166  Identities=15%  Similarity=0.205  Sum_probs=115.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC------Ccccccc-ccCCCCc---------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT------PFGLVRS-GVAPDHP---------------------   69 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~------~gg~~~~-~~~p~~~---------------------   69 (334)
                      ..++|+|||||++|++||..|++.+  .+|+|||+++.      .||.|.+ ++.|.+.                     
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~   79 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLG--LKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS   79 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCC--CEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            3579999999999999999999997  99999999863      3443321 2222110                     


Q ss_pred             ------chh-----------HHHHHHHHHhhcCCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCC
Q 019876           70 ------ETK-----------IVINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALG  124 (334)
Q Consensus        70 ------~~~-----------~~~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~  124 (334)
                            ...           .+...+...++..+++++.+....     ..+...++   .+.||+||||||+ .|..|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~-~p~~~~  158 (476)
T 3lad_A           80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGS-KPVEIP  158 (476)
T ss_dssp             CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCE-EECCCT
T ss_pred             cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCC-CCCCCC
Confidence                  011           111222344556789988876542     23333333   4689999999999 587776


Q ss_pred             CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc
Q 019876          125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR  204 (334)
Q Consensus       125 ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (334)
                      .++.+...+++..++..    ..         ..+++|+|||+|++|+|+|..|.+                    .|. 
T Consensus       159 ~~~~~~~~v~~~~~~~~----~~---------~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g~-  204 (476)
T 3lad_A          159 PAPVDQDVIVDSTGALD----FQ---------NVPGKLGVIGAGVIGLELGSVWAR--------------------LGA-  204 (476)
T ss_dssp             TSCCCSSSEEEHHHHTS----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-
T ss_pred             CCCCCcccEEechhhhc----cc---------cCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-
Confidence            66666667776654431    11         256899999999999999999986                    565 


Q ss_pred             eEEEEeecCccccCCC
Q 019876          205 KVYLVGRRGPVQAACT  220 (334)
Q Consensus       205 ~Vtiv~r~~~~~~~~~  220 (334)
                      +|++++|.+.++..++
T Consensus       205 ~Vtlv~~~~~~l~~~~  220 (476)
T 3lad_A          205 EVTVLEAMDKFLPAVD  220 (476)
T ss_dssp             EEEEEESSSSSSTTSC
T ss_pred             cEEEEecCCCcCcccC
Confidence            6999999988765444

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.84  E-value=1.6e-20  Score=181.96  Aligned_cols=163  Identities=16%  Similarity=0.201  Sum_probs=114.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCc--------------------------ch
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHP--------------------------ET   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~--------------------------~~   71 (334)
                      .++|+|||||+||+++|..|++.+  .+|+|||++ ..||.+. .++.|.+.                          ..
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G--~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLG--LSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY   79 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence            368999999999999999999997  999999998 5565442 23222210                          01


Q ss_pred             hH-----------HHHHHHHHhhcCCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCCCCCccCCC
Q 019876           72 KI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLIG  132 (334)
Q Consensus        72 ~~-----------~~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~~~~  132 (334)
                      ..           +...+.+.+++.+++++.++.+.     ..+...++   .+.||+||+|||+ .|+.|+++|.+.. 
T Consensus        80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~-~~~~~~~~g~~~~-  157 (464)
T 2a8x_A           80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGS-STRLVPGTSLSAN-  157 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCE-EECCCTTCCCBTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCC-CCCCCCCCCCCce-
Confidence            11           11223455666789998876542     12333333   4689999999999 5888888886543 


Q ss_pred             ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      +++..++..    ..         ..+++|+|||+|++|+|+|..|++                    .|. +||+++|+
T Consensus       158 ~~~~~~~~~----~~---------~~~~~vvViGgG~~g~E~A~~l~~--------------------~g~-~Vtlv~~~  203 (464)
T 2a8x_A          158 VVTYEEQIL----SR---------ELPKSIIIAGAGAIGMEFGYVLKN--------------------YGV-DVTIVEFL  203 (464)
T ss_dssp             EECHHHHHT----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSS
T ss_pred             EEecHHHhh----cc---------ccCCeEEEECCcHHHHHHHHHHHH--------------------cCC-eEEEEEcC
Confidence            555544331    11         146899999999999999999986                    675 69999999


Q ss_pred             CccccCCC
Q 019876          213 GPVQAACT  220 (334)
Q Consensus       213 ~~~~~~~~  220 (334)
                      +++++.++
T Consensus       204 ~~~l~~~~  211 (464)
T 2a8x_A          204 PRALPNED  211 (464)
T ss_dssp             SSSSTTSC
T ss_pred             CccccccC
Confidence            88765443

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.84  E-value=1.1e-20  Score=184.64  Aligned_cols=165  Identities=18%  Similarity=0.177  Sum_probs=117.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCC-CCeEEEEcCCCCCccccc-cccCCCC----------------------------c
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFGLVR-SGVAPDH----------------------------P   69 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~-~~~v~vie~~~~~gg~~~-~~~~p~~----------------------------~   69 (334)
                      ++|+|||||++|++||..|++..| +.+|+|||+++ +||.+. +++.|.+                            .
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            689999999999999999999833 49999999987 666532 2222210                            0


Q ss_pred             chhH-----------HHHHHHHHhhcCCcEEEeCeEEc---------eE--Eecccc---eeccCeEEEeccCCCCCCCC
Q 019876           70 ETKI-----------VINQFSRVVQHERCSFFGNVTLG---------SS--VSLSEL---RQLYHVVVLAYGAESDRALG  124 (334)
Q Consensus        70 ~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~---------~~--v~~~~~---~~~yd~lIlATGs~~p~~~~  124 (334)
                      ....           +...+.+++++.+++++.+....         ..  +...++   ...||+||+|||+ .|..|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs-~p~~p~  160 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA-SPRILP  160 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE-EECCCG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCC-CCCCCC
Confidence            1112           22234566677899998876431         22  222333   4689999999999 588889


Q ss_pred             CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc
Q 019876          125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR  204 (334)
Q Consensus       125 ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (334)
                      +||.+..++++..++..    ..         ..+++++|||+|++|+|+|..|.+                    .|. 
T Consensus       161 i~g~~~~~v~~~~~~~~----~~---------~~~~~vvViGgG~ig~E~A~~l~~--------------------~g~-  206 (499)
T 1xdi_A          161 SAQPDGERILTWRQLYD----LD---------ALPDHLIVVGSGVTGAEFVDAYTE--------------------LGV-  206 (499)
T ss_dssp             GGCCCSSSEEEGGGGGG----CS---------SCCSSEEEESCSHHHHHHHHHHHH--------------------TTC-
T ss_pred             CCCCCcCcEEehhHhhh----hh---------ccCCeEEEECCCHHHHHHHHHHHH--------------------cCC-
Confidence            99987667776655432    10         146899999999999999999986                    565 


Q ss_pred             eEEEEeecCccccCCC
Q 019876          205 KVYLVGRRGPVQAACT  220 (334)
Q Consensus       205 ~Vtiv~r~~~~~~~~~  220 (334)
                      +|+++++.+.++..++
T Consensus       207 ~Vtlv~~~~~~l~~~d  222 (499)
T 1xdi_A          207 PVTVVASQDHVLPYED  222 (499)
T ss_dssp             CEEEECSSSSSSCCSS
T ss_pred             eEEEEEcCCccccccC
Confidence            5999999988765543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.84  E-value=1.2e-20  Score=182.98  Aligned_cols=184  Identities=21%  Similarity=0.247  Sum_probs=130.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCc---------------------chhHH--
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHP---------------------ETKIV--   74 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~---------------------~~~~~--   74 (334)
                      .++|+||||||||++||..|++.+  .+|+|||+.+.+||.|.+ ++.|.+.                     ....+  
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G--~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAK--YNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD   81 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence            369999999999999999999997  999999988888887654 4434211                     11111  


Q ss_pred             --------H--HHHHHHhhcCCcEEEeCeEEc-----eEEecccc-e--eccCeEEEeccCCCCCCCCCCCccCCCccch
Q 019876           75 --------I--NQFSRVVQHERCSFFGNVTLG-----SSVSLSEL-R--QLYHVVVLAYGAESDRALGIPGEDLIGVHSA  136 (334)
Q Consensus        75 --------~--~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~-~--~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~  136 (334)
                              .  ..+...+++.+++++.+....     ..+...++ .  +.||+||||||+ .|+.|++||.+  ++++.
T Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~--~~~t~  158 (466)
T 3l8k_A           82 RKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGA-ETAKLRLPGVE--YCLTS  158 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCE-EECCCCCTTGG--GSBCH
T ss_pred             HHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCC-CccCCCCCCcc--ceEeH
Confidence                    1  344456677889988775431     12333332 3  689999999999 69999999987  67777


Q ss_pred             hhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      .++.......         ...+++++|||+|++|+|+|..|++                    .|. +|++++|.+.++
T Consensus       159 ~~~~~~~~~l---------~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~l  208 (466)
T 3l8k_A          159 DDIFGYKTSF---------RKLPQDMVIIGAGYIGLEIASIFRL--------------------MGV-QTHIIEMLDRAL  208 (466)
T ss_dssp             HHHHSTTCSC---------CSCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSSC
T ss_pred             HHHHHHHHHH---------hhCCCeEEEECCCHHHHHHHHHHHH--------------------cCC-EEEEEEeCCcCC
Confidence            6655211111         1146899999999999999999986                    565 699999999988


Q ss_pred             cCC-CHH---HHHHHHcCCceEEEEccC
Q 019876          217 AAC-TAK---ELREILGIKNLYVHIRED  240 (334)
Q Consensus       217 ~~~-~~~---~~~~~l~~~gv~~~~~~~  240 (334)
                      ..+ ++.   .+.+.++   |+++++..
T Consensus       209 ~~~~d~~~~~~l~~~l~---v~i~~~~~  233 (466)
T 3l8k_A          209 ITLEDQDIVNTLLSILK---LNIKFNSP  233 (466)
T ss_dssp             TTSCCHHHHHHHHHHHC---CCEECSCC
T ss_pred             CCCCCHHHHHHHHhcCE---EEEEECCE
Confidence            887 542   2333333   77776544

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.84  E-value=3.1e-20  Score=181.15  Aligned_cols=164  Identities=21%  Similarity=0.269  Sum_probs=111.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcc--------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPE--------------------------   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~--------------------------   70 (334)
                      ..++|+||||||||++||..|++.+  .+|+|||+.+.+||.|.+ ++.|.+..                          
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~  101 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKL  101 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCcc
Confidence            3478999999999999999999997  999999998888886533 33232110                          


Q ss_pred             -hh-----------HHHHHHHHHhhcCCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCCCCCCcc-
Q 019876           71 -TK-----------IVINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGED-  129 (334)
Q Consensus        71 -~~-----------~~~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~~ipG~~-  129 (334)
                       ..           .+...+...++..+++++.+....     ..+...++   .+.||+||||||+. |  +++||.+ 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~-p--~~ipg~~~  178 (491)
T 3urh_A          102 NLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSD-V--AGIPGVEV  178 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEE-C--CCBTTBCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCC-C--CCCCCccc
Confidence             01           111223344566788888776531     12333333   46899999999994 4  3567764 


Q ss_pred             ---CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceE
Q 019876          130 ---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV  206 (334)
Q Consensus       130 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V  206 (334)
                         ...+++..++.    ..         ...+++|+|||+|++|+|+|..|++                    .|. +|
T Consensus       179 ~~~~~~~~~~~~~~----~~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g~-~V  224 (491)
T 3urh_A          179 AFDEKTIVSSTGAL----AL---------EKVPASMIVVGGGVIGLELGSVWAR--------------------LGA-KV  224 (491)
T ss_dssp             CCCSSSEECHHHHT----SC---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------HTC-EE
T ss_pred             ccCCeeEEehhHhh----hh---------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cCC-EE
Confidence               23344443322    11         1257999999999999999999986                    565 69


Q ss_pred             EEEeecCccccCCC
Q 019876          207 YLVGRRGPVQAACT  220 (334)
Q Consensus       207 tiv~r~~~~~~~~~  220 (334)
                      +++++.+.++..++
T Consensus       225 tlv~~~~~~l~~~d  238 (491)
T 3urh_A          225 TVVEFLDTILGGMD  238 (491)
T ss_dssp             EEECSSSSSSSSSC
T ss_pred             EEEeccccccccCC
Confidence            99999988765544

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.84  E-value=2.7e-20  Score=181.29  Aligned_cols=203  Identities=16%  Similarity=0.216  Sum_probs=134.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCC--------------------------cch
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDH--------------------------PET   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~--------------------------~~~   71 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||+++.+||.+.+ ++.|.+                          ...
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~   83 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI   83 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence            478999999999999999999987  999999997777765422 222210                          011


Q ss_pred             hHHH-----------HHHHHHhhcCCcEEEeCeEEc---eEEec--cc-------------ceeccCeEEEeccCCCCCC
Q 019876           72 KIVI-----------NQFSRVVQHERCSFFGNVTLG---SSVSL--SE-------------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        72 ~~~~-----------~~~~~~~~~~~i~~~~~~~v~---~~v~~--~~-------------~~~~yd~lIlATGs~~p~~  122 (334)
                      ..+.           ..+...++..+++++.++.+.   ..+.+  .+             ..+.||+||+|||++ |..
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~-p~~  162 (482)
T 1ojt_A           84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSR-VTK  162 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEE-ECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCC-CCC
Confidence            1111           123345566789988776432   12222  22             246899999999994 777


Q ss_pred             CC-CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC
Q 019876          123 LG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS  201 (334)
Q Consensus       123 ~~-ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~  201 (334)
                      |+ +| .+. .+++..++..    ..         ..+++++|||+|++|+|+|..|++                    .
T Consensus       163 ~~~i~-~~~-~v~~~~~~~~----~~---------~~~~~vvViGgG~ig~E~A~~l~~--------------------~  207 (482)
T 1ojt_A          163 LPFIP-EDP-RIIDSSGALA----LK---------EVPGKLLIIGGGIIGLEMGTVYST--------------------L  207 (482)
T ss_dssp             CSSCC-CCT-TEECHHHHTT----CC---------CCCSEEEEESCSHHHHHHHHHHHH--------------------H
T ss_pred             CCCCC-ccC-cEEcHHHHhc----cc---------ccCCeEEEECCCHHHHHHHHHHHH--------------------c
Confidence            76 66 332 4555544331    11         147899999999999999999986                    5


Q ss_pred             CcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCce
Q 019876          202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR  281 (334)
Q Consensus       202 ~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (334)
                      |. +||+++|.+.++..+++. +                                     .+.+++.+         .+.
T Consensus       208 G~-~Vtlv~~~~~~l~~~~~~-~-------------------------------------~~~l~~~l---------~~~  239 (482)
T 1ojt_A          208 GS-RLDVVEMMDGLMQGADRD-L-------------------------------------VKVWQKQN---------EYR  239 (482)
T ss_dssp             TC-EEEEECSSSSSSTTSCHH-H-------------------------------------HHHHHHHH---------GGG
T ss_pred             CC-eEEEEEECCccccccCHH-H-------------------------------------HHHHHHHH---------Hhc
Confidence            65 699999998876544321 1                                     12233333         267


Q ss_pred             EEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          282 ELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       282 gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                      ||+|++++.+++|.  +  ++....|.+.+
T Consensus       240 gV~i~~~~~v~~i~--~--~~~~~~v~~~~  265 (482)
T 1ojt_A          240 FDNIMVNTKTVAVE--P--KEDGVYVTFEG  265 (482)
T ss_dssp             EEEEECSCEEEEEE--E--ETTEEEEEEES
T ss_pred             CCEEEECCEEEEEE--E--cCCeEEEEEec
Confidence            99999999999997  4  23334555553

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.84  E-value=2.8e-20  Score=189.69  Aligned_cols=185  Identities=19%  Similarity=0.131  Sum_probs=137.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcchhHHHHHHHHHhhc------CCcEE
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQH------ERCSF   89 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~~~~~~~~~~~~~~~------~~i~~   89 (334)
                      ...++|+||||||||++||.+|++.+  ++|+|||+++.+||.+.+ ...|++.....+..++...++.      .++++
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G--~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i  464 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLA  464 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEE
Confidence            35689999999999999999999997  999999999999998876 4456655444444444333332      25666


Q ss_pred             EeCeEEceEEecccc-eeccCeEEEeccCCC-------CCCCCCCCcc--CCCccchhhHHHHhcCCCCCCCCCCCCCCC
Q 019876           90 FGNVTLGSSVSLSEL-RQLYHVVVLAYGAES-------DRALGIPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKST  159 (334)
Q Consensus        90 ~~~~~v~~~v~~~~~-~~~yd~lIlATGs~~-------p~~~~ipG~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ..+.    .++.+++ ...||+||||||+..       |..|++||.+  .+++++..+++.   ..         ...+
T Consensus       465 ~~~~----~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~---~~---------~~~g  528 (729)
T 1o94_A          465 LGQK----PMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMD---GK---------KKIG  528 (729)
T ss_dssp             CSCC----CCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHH---CC---------SCCC
T ss_pred             EeCe----EEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhc---CC---------CCCC
Confidence            5443    2334443 358999999999941       4667899987  678888777653   11         2367


Q ss_pred             CeEEEEc--CCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc----CCCHHHHHHHHcCCce
Q 019876          160 DTAVILG--QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA----ACTAKELREILGIKNL  233 (334)
Q Consensus       160 k~vvVIG--~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~----~~~~~~~~~~l~~~gv  233 (334)
                      ++|+|||  ||++|+|+|..|++                    .|. +||+++|++ +..    +...+.+.+.|+..||
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~--------------------~G~-~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV  586 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLAT--------------------AGH-EVTIVSGVH-LANYMHFTLEYPNMMRRLHELHV  586 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHH--------------------TTC-EEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHH--------------------cCC-EEEEEeccc-ccccccccccHHHHHHHHHhCCC
Confidence            9999999  99999999999996                    676 699999988 533    2235778888889999


Q ss_pred             EEEEccCc
Q 019876          234 YVHIREDD  241 (334)
Q Consensus       234 ~~~~~~~~  241 (334)
                      +++++...
T Consensus       587 ~i~~~~~v  594 (729)
T 1o94_A          587 EELGDHFC  594 (729)
T ss_dssp             EEECSEEE
T ss_pred             EEEcCcEE
Confidence            99987543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.84  E-value=6.8e-20  Score=171.31  Aligned_cols=203  Identities=20%  Similarity=0.212  Sum_probs=139.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc-------CCCCc--chhHHHHHHHHHhhcCCcEE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCSF   89 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~-------~p~~~--~~~~~~~~~~~~~~~~~i~~   89 (334)
                      .++|+|||||++|+++|.+|++.+  .+|+|||+.+.+||.+..-.       .|.++  ...++..++.+.+...++++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   91 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNN--ISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDV   91 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEE
Confidence            579999999999999999999986  99999999988887664211       12222  23567777888888888998


Q ss_pred             EeCeEEce---------EEecccc-eeccCeEEEeccCC--CCCCCCCCC-cc-CC--CccchhhHHHHhcCCCCCCCCC
Q 019876           90 FGNVTLGS---------SVSLSEL-RQLYHVVVLAYGAE--SDRALGIPG-ED-LI--GVHSAREFVWWYNGHPDGKNLS  153 (334)
Q Consensus        90 ~~~~~v~~---------~v~~~~~-~~~yd~lIlATGs~--~p~~~~ipG-~~-~~--~v~~~~~~~~~~~~~~~~~~~~  153 (334)
                      +.+..+..         .+.+.++ .+.||+||+|||+.  .|..+++|| .+ ..  +++..         ..+.    
T Consensus        92 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~---------~~~~----  158 (360)
T 3ab1_A           92 VLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA---------VKSV----  158 (360)
T ss_dssp             ECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESS---------CSCG----
T ss_pred             EcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEe---------cCCH----
Confidence            87754421         2333333 46899999999984  266667777 43 11  12211         0010    


Q ss_pred             CCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCce
Q 019876          154 PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNL  233 (334)
Q Consensus       154 ~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv  233 (334)
                       ....+++|+|||+|++|+|+|..|.+                    .+. +|++++|++.+...  + .+.        
T Consensus       159 -~~~~~~~vvVvG~G~~g~e~A~~l~~--------------------~g~-~V~lv~~~~~~~~~--~-~~~--------  205 (360)
T 3ab1_A          159 -EDFKGKRVVIVGGGDSALDWTVGLIK--------------------NAA-SVTLVHRGHEFQGH--G-KTA--------  205 (360)
T ss_dssp             -GGGTTCEEEEECSSHHHHHHHHHTTT--------------------TSS-EEEEECSSSSCSSC--S-HHH--------
T ss_pred             -HHcCCCcEEEECCCHHHHHHHHHHHh--------------------cCC-EEEEEEcCCCCCCC--H-HHH--------
Confidence             01257999999999999999999986                    454 79999998765311  0 000        


Q ss_pred             EEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEE
Q 019876          234 YVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                                                   +.+.+..         .+.||+|++++.+++|.  + +++++.+|.+.
T Consensus       206 -----------------------------~~l~~~~---------~~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~  241 (360)
T 3ab1_A          206 -----------------------------HEVERAR---------ANGTIDVYLETEVASIE--E-SNGVLTRVHLR  241 (360)
T ss_dssp             -----------------------------HSSHHHH---------HHTSEEEESSEEEEEEE--E-ETTEEEEEEEE
T ss_pred             -----------------------------HHHHHHh---------hcCceEEEcCcCHHHhc--c-CCCceEEEEEE
Confidence                                         1111221         14589999999999998  5 35778788885

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.84  E-value=3.7e-20  Score=180.02  Aligned_cols=163  Identities=17%  Similarity=0.237  Sum_probs=111.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCc----------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHP----------------------------   69 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~----------------------------   69 (334)
                      .++|+||||||+|+++|..|++.+  .+|+|||+++.+||.+.+ ++.|.+.                            
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~   82 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI   82 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence            468999999999999999999997  899999998777776532 2222110                            


Q ss_pred             chhHH-----------HHHHHHHhhcCCcEEEeCeEEc-----eEEecccc---e------eccCeEEEeccCCCCCCCC
Q 019876           70 ETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---R------QLYHVVVLAYGAESDRALG  124 (334)
Q Consensus        70 ~~~~~-----------~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~---~------~~yd~lIlATGs~~p~~~~  124 (334)
                      ....+           ...+.+.+++.+++++.++.+.     ..+...++   .      +.||+||+|||+. |+  .
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~-p~--~  159 (478)
T 1v59_A           83 NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSE-VT--P  159 (478)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEE-EC--C
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCC-CC--C
Confidence            01111           1123345566789998887542     12333332   4      7899999999994 53  4


Q ss_pred             CCCccCCC--ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC
Q 019876          125 IPGEDLIG--VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS  202 (334)
Q Consensus       125 ipG~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~  202 (334)
                      +||.+..+  +++..++..    ..         ..+++++|||+|++|+|+|..|++                    .|
T Consensus       160 ~~g~~~~~~~v~~~~~~~~----~~---------~~~~~vvViGgG~~g~e~A~~l~~--------------------~g  206 (478)
T 1v59_A          160 FPGIEIDEEKIVSSTGALS----LK---------EIPKRLTIIGGGIIGLEMGSVYSR--------------------LG  206 (478)
T ss_dssp             CTTCCCCSSSEECHHHHTT----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred             CCCCCCCCceEEcHHHHHh----hh---------ccCceEEEECCCHHHHHHHHHHHH--------------------cC
Confidence            56654333  555443321    11         136899999999999999999986                    67


Q ss_pred             cceEEEEeecCccccCCC
Q 019876          203 IRKVYLVGRRGPVQAACT  220 (334)
Q Consensus       203 ~~~Vtiv~r~~~~~~~~~  220 (334)
                      . +||+++|++.++..++
T Consensus       207 ~-~Vtlv~~~~~~l~~~~  223 (478)
T 1v59_A          207 S-KVTVVEFQPQIGASMD  223 (478)
T ss_dssp             C-EEEEECSSSSSSSSSC
T ss_pred             C-EEEEEEeCCccccccC
Confidence            5 6999999988765443

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.83  E-value=9e-21  Score=186.54  Aligned_cols=164  Identities=17%  Similarity=0.200  Sum_probs=110.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC--------CCccc-cccccCCCCcch-------------------
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHPET-------------------   71 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~--------~~gg~-~~~~~~p~~~~~-------------------   71 (334)
                      ++++|||+||||+.||..+++.|  .+|+|||+..        .+||. ++.||.|.+.+.                   
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G--~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~  120 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHG--ARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWK  120 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--CCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcc
Confidence            79999999999999999999997  9999999643        25664 455776643211                   


Q ss_pred             --------hHHH-----------HHHHHHhhcCCcEEEeCeEE---ceEEec-------ccceeccCeEEEeccCCCCCC
Q 019876           72 --------KIVI-----------NQFSRVVQHERCSFFGNVTL---GSSVSL-------SELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        72 --------~~~~-----------~~~~~~~~~~~i~~~~~~~v---~~~v~~-------~~~~~~yd~lIlATGs~~p~~  122 (334)
                              ..+.           ..+...+++.+|+++.+...   ..++.+       ....+.+|++|||||+ +|..
T Consensus       121 ~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs-~P~~  199 (542)
T 4b1b_A          121 FDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGC-RPHI  199 (542)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCE-EECC
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCC-CCCC
Confidence                    1111           11223455667877655432   112221       1223589999999999 5888


Q ss_pred             CCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC
Q 019876          123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS  202 (334)
Q Consensus       123 ~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~  202 (334)
                      |+.++.+...++++.+++.    ..         ..+++++|||||++|+|+|..+++                    +|
T Consensus       200 P~~~~~~~~~~~ts~~~l~----l~---------~lP~~lvIIGgG~IGlE~A~~~~~--------------------lG  246 (542)
T 4b1b_A          200 PDDVEGAKELSITSDDIFS----LK---------KDPGKTLVVGASYVALECSGFLNS--------------------LG  246 (542)
T ss_dssp             CSSSBTHHHHCBCHHHHTT----CS---------SCCCSEEEECCSHHHHHHHHHHHH--------------------HT
T ss_pred             CCcccCCCccccCchhhhc----cc---------cCCceEEEECCCHHHHHHHHHHHh--------------------cC
Confidence            8665554445566665542    11         146899999999999999999996                    78


Q ss_pred             cceEEEEeecCccccCCCH
Q 019876          203 IRKVYLVGRRGPVQAACTA  221 (334)
Q Consensus       203 ~~~Vtiv~r~~~~~~~~~~  221 (334)
                      .+ ||++.|. +++..+++
T Consensus       247 ~~-VTii~~~-~~L~~~D~  263 (542)
T 4b1b_A          247 YD-VTVAVRS-IVLRGFDQ  263 (542)
T ss_dssp             CC-EEEEESS-CSSTTSCH
T ss_pred             Ce-EEEeccc-ccccccch
Confidence            74 9999874 55555543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.83  E-value=4.4e-20  Score=187.23  Aligned_cols=186  Identities=16%  Similarity=0.119  Sum_probs=148.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcchhHHHHHHHHHhhcC-CcEEEeCeE
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHE-RCSFFGNVT   94 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~~~~~~~~~~~~~~~~-~i~~~~~~~   94 (334)
                      ...++|+|||||+||++||.+|++.+  ++|+|||+++.+||.+.+ ...|++....++..++...+.+. +++++.++.
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G--~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~  466 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRG--YDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESP  466 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCC
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCe
Confidence            35689999999999999999999997  999999999999988766 34577777778888888888887 899988865


Q ss_pred             EceEEecccc-eeccCeEEEeccCCC-------CCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEc
Q 019876           95 LGSSVSLSEL-RQLYHVVVLAYGAES-------DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG  166 (334)
Q Consensus        95 v~~~v~~~~~-~~~yd~lIlATGs~~-------p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG  166 (334)
                      +    +..+. ...||+||+|||+..       |..|++||.+.+++++..+++..            ....+++|+|||
T Consensus       467 v----~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~------------~~~~g~~VvViG  530 (690)
T 3k30_A          467 M----TGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAG------------RLPDGKKVVVYD  530 (690)
T ss_dssp             C----CHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTT------------CCCSSSEEEEEE
T ss_pred             e----cHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCC------------CCCCCCEEEEEc
Confidence            4    23333 358999999999931       44678999887788877665421            133678999999


Q ss_pred             --CCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC----CCHHHHHHHHcCCceEEEEccC
Q 019876          167 --QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA----CTAKELREILGIKNLYVHIRED  240 (334)
Q Consensus       167 --~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~----~~~~~~~~~l~~~gv~~~~~~~  240 (334)
                        +|.+|+|+|..|.+                    .+. +|+++++.+.+...    .....+.+.|+..||+++.+..
T Consensus       531 ~ggG~~g~e~A~~L~~--------------------~g~-~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~  589 (690)
T 3k30_A          531 DDHYYLGGVVAELLAQ--------------------KGY-EVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHA  589 (690)
T ss_dssp             CSCSSHHHHHHHHHHH--------------------TTC-EEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEE
T ss_pred             CCCCccHHHHHHHHHh--------------------CCC-eeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcE
Confidence              99999999999996                    565 69999999876543    3357788888999999998765


Q ss_pred             c
Q 019876          241 D  241 (334)
Q Consensus       241 ~  241 (334)
                      .
T Consensus       590 V  590 (690)
T 3k30_A          590 V  590 (690)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.83  E-value=6.2e-20  Score=167.89  Aligned_cols=160  Identities=14%  Similarity=0.149  Sum_probs=104.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCC-----cchhHHHHHHHHHhhcC-CcEEE
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----PETKIVINQFSRVVQHE-RCSFF   90 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~-----~~~~~~~~~~~~~~~~~-~i~~~   90 (334)
                      ++.++|+||||||||++||.+|++.+  .+|+|||++. +||.+.... |++     ....++.....+.+.++ .+.+.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g--~~v~lie~~~-~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRAR--KQIALFDNNT-NRNRVTQNS-HGFITRDGIKPEEFKEIGLNEVMKYPSVHYY   79 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSC-CGGGGSSCB-CCSTTCTTBCHHHHHHHHHHHHTTSTTEEEE
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCC-CCCeeeeec-CCccCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence            45689999999999999999999997  9999999974 455442211 222     23445555555555544 45555


Q ss_pred             eCeEEc--------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCC
Q 019876           91 GNVTLG--------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKS  158 (334)
Q Consensus        91 ~~~~v~--------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~  158 (334)
                      ....+.        ..+...++ ++.||+||||||+ .|+.|++||.+.   .+++++.....    .         ..+
T Consensus        80 ~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs-~p~~p~i~G~~~~~~~~v~~~~~~~~----~---------~~~  145 (304)
T 4fk1_A           80 EKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGM-QEEFPSIPNVREYYGKSLFSCPYCDG----W---------ELK  145 (304)
T ss_dssp             ECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCC-EEECCSCTTHHHHBTTTEESCHHHHS----G---------GGT
T ss_pred             eeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCC-ccccccccCccccccceeeeccccch----h---------Hhc
Confidence            554432        12333333 4689999999999 699999999752   34444322211    0         125


Q ss_pred             CCeEEEEcCCHH-HHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNV-ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~-g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +++++|||||.. ++|+|..+.+                    .+ .+|+++.+...+
T Consensus       146 ~~~~~VIggG~~~~~e~a~~~~~--------------------~~-~~v~i~~~~~~~  182 (304)
T 4fk1_A          146 DQPLIIISENEDHTLHMTKLVYN--------------------WS-TDLVIATNGNEL  182 (304)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHTT--------------------TC-SCEEEECSSCCC
T ss_pred             CCceeeecCCCchhhhHHHHHHh--------------------CC-ceEEEEeccccc
Confidence            678888888865 5777777774                    44 569999877644

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.83  E-value=4.8e-20  Score=183.71  Aligned_cols=197  Identities=15%  Similarity=0.176  Sum_probs=137.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc---CCCC--cchhHHHHHHHHHhhcCCcEEEe
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH--PETKIVINQFSRVVQHERCSFFG   91 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~---~p~~--~~~~~~~~~~~~~~~~~~i~~~~   91 (334)
                      +.+++|+|||||+||++||.+|++.+++.+|+|||+++.++- ...++   .++.  .....+..++..+.+..+++++.
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~-~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~  112 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISF-ANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRV  112 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB-CGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEEC
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccc-cCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEE
Confidence            456899999999999999999999966799999999887531 11111   0111  01112334455566677899888


Q ss_pred             CeEEc------eEEecc---cc---eeccCeEEEeccCCCCCCCCCCCc-cCCCccchhhHHHHhcCCCCCCCCCCCCCC
Q 019876           92 NVTLG------SSVSLS---EL---RQLYHVVVLAYGAESDRALGIPGE-DLIGVHSAREFVWWYNGHPDGKNLSPDLKS  158 (334)
Q Consensus        92 ~~~v~------~~v~~~---~~---~~~yd~lIlATGs~~p~~~~ipG~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  158 (334)
                      +..+.      ..+.+.   ++   ...||+||||||+ .|+.|++||. +.+++++...+....... ..  +.  -..
T Consensus       113 ~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~~v~~~~~~~~~~~~~-~~--l~--~~~  186 (588)
T 3ics_A          113 LSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA-KPIVPSIPGIEEAKALFTLRNVPDTDRIK-AY--ID--EKK  186 (588)
T ss_dssp             SEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTTTTCTTEEECSSHHHHHHHH-HH--HH--HHC
T ss_pred             CCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCC-CCCCCCCCCcccCCCeEEeCCHHHHHHHH-HH--Hh--hcC
Confidence            77652      123332   22   3589999999999 6899999998 677777665443221000 00  00  014


Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEE
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYV  235 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~  235 (334)
                      +++++|||+|++|+|+|..|++                    .|. +|++++|.+.++..++.   +.+.+.++..||++
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i  245 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRE--------------------RGI-EVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVEL  245 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--------------------CCC-eEEEEecCCcccccCCHHHHHHHHHHHHHcCCEE
Confidence            7899999999999999999986                    565 69999999988888775   45677788899999


Q ss_pred             EEccCc
Q 019876          236 HIREDD  241 (334)
Q Consensus       236 ~~~~~~  241 (334)
                      +.+...
T Consensus       246 ~~~~~v  251 (588)
T 3ics_A          246 VFEDGV  251 (588)
T ss_dssp             ECSCCE
T ss_pred             EECCeE
Confidence            876543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.83  E-value=1.9e-19  Score=176.91  Aligned_cols=200  Identities=18%  Similarity=0.252  Sum_probs=140.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc--cc--CCC--CcchhHHHHHHHHHhhcCCcEEEe
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFFG   91 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~--~~--~p~--~~~~~~~~~~~~~~~~~~~i~~~~   91 (334)
                      ..++|+||||||||+++|.+|++.+  .+|+|+|+  ..||.+..  ++  ++.  +....++..++.+.+.+.+++++.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G--~~v~lie~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~  286 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKG--IRTGLMGE--RFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVID  286 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECS--STTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEEC
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCC--CeEEEEEC--CCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEc
Confidence            4679999999999999999999987  99999986  45666542  11  011  123456777888888889999998


Q ss_pred             CeEEc-----------eEEecccc-eeccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCC
Q 019876           92 NVTLG-----------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDL  156 (334)
Q Consensus        92 ~~~v~-----------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~  156 (334)
                      ++.+.           ..+.+.++ .+.||+||+|||+ .|+.+++||.+.   .+++.+.        ..     ....
T Consensus       287 ~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~-~~~~~~ipG~~~~~~~~v~~~~--------~~-----~~~~  352 (521)
T 1hyu_A          287 SQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA-KWRNMNVPGEDQYRTKGVTYCP--------HC-----DGPL  352 (521)
T ss_dssp             SCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE-EECCCCCTTTTTTTTTTEECCT--------TC-----CGGG
T ss_pred             CCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC-CcCCCCCCChhhhcCceEEEee--------cC-----chhh
Confidence            85431           12444444 4689999999999 588888998752   2222211        00     1112


Q ss_pred             CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEE
Q 019876          157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH  236 (334)
Q Consensus       157 ~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~  236 (334)
                      ..+++|+|||+|++|+|+|..|++                    .+ .+||+++|.+.+..   ++              
T Consensus       353 ~~~k~V~ViGgG~~g~E~A~~L~~--------------------~g-~~Vtlv~~~~~l~~---~~--------------  394 (521)
T 1hyu_A          353 FKGKRVAVIGGGNSGVEAAIDLAG--------------------IV-EHVTLLEFAPEMKA---DQ--------------  394 (521)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHHHH--------------------HB-SEEEEECSSSSCCS---CH--------------
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHh--------------------hC-CEEEEEEeCcccCc---CH--------------
Confidence            368999999999999999999986                    44 47999999876531   01              


Q ss_pred             EccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                                 .+++.+.        ...||++++++.+++|.  + +++++++|.+.+
T Consensus       395 ---------------------------~l~~~l~--------~~~gV~v~~~~~v~~i~--~-~~~~v~~v~~~~  431 (521)
T 1hyu_A          395 ---------------------------VLQDKVR--------SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRD  431 (521)
T ss_dssp             ---------------------------HHHHHHT--------TCTTEEEECSEEEEEEE--E-CSSSEEEEEEEE
T ss_pred             ---------------------------HHHHHHh--------cCCCcEEEeCCEEEEEE--c-CCCcEEEEEEEe
Confidence                                       1222221        12589999999999998  5 356888888875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.83  E-value=3.7e-20  Score=180.34  Aligned_cols=162  Identities=19%  Similarity=0.215  Sum_probs=111.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCc--------------------------ch
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHP--------------------------ET   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~--------------------------~~   71 (334)
                      .++|+|||||++|++||..|++.+  .+|+|||+ +.+||.+.+ ++.|.+.                          ..
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~  102 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALG--KRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNW  102 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCc--CEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence            469999999999999999999997  99999999 456665432 3322110                          01


Q ss_pred             -----------hHHHHHHHHHhhcCCcEEEeCeEEc---eEEec--ccceeccCeEEEeccCCCCC-CCCCCCccCCCcc
Q 019876           72 -----------KIVINQFSRVVQHERCSFFGNVTLG---SSVSL--SELRQLYHVVVLAYGAESDR-ALGIPGEDLIGVH  134 (334)
Q Consensus        72 -----------~~~~~~~~~~~~~~~i~~~~~~~v~---~~v~~--~~~~~~yd~lIlATGs~~p~-~~~ipG~~~~~v~  134 (334)
                                 ..+...+...+...+++++.+....   ..+.+  +...+.||++|||||+ .|. .|++||.+  .++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~-~p~~~p~i~G~~--~~~  179 (484)
T 3o0h_A          103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGA-KIVSNSAIKGSD--LCL  179 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCE-EECCC--CBTGG--GSB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCC-CcccCCCCCCcc--ccc
Confidence                       1222334455667789988775431   23444  3345689999999999 588 88899875  233


Q ss_pred             chhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      +..++..    .         ...+++++|||+|++|+|+|..|.+                    .|. +|+++++.+.
T Consensus       180 ~~~~~~~----~---------~~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g~-~Vtli~~~~~  225 (484)
T 3o0h_A          180 TSNEIFD----L---------EKLPKSIVIVGGGYIGVEFANIFHG--------------------LGV-KTTLLHRGDL  225 (484)
T ss_dssp             CTTTGGG----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSS
T ss_pred             cHHHHHh----H---------HhcCCcEEEECcCHHHHHHHHHHHH--------------------cCC-eEEEEECCCc
Confidence            3333221    0         1247899999999999999999986                    565 6999999987


Q ss_pred             cccCCC
Q 019876          215 VQAACT  220 (334)
Q Consensus       215 ~~~~~~  220 (334)
                      ++..++
T Consensus       226 ~l~~~~  231 (484)
T 3o0h_A          226 ILRNFD  231 (484)
T ss_dssp             SSTTSC
T ss_pred             cccccC
Confidence            765443

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.83  E-value=5.3e-20  Score=178.08  Aligned_cols=182  Identities=16%  Similarity=0.213  Sum_probs=128.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCC-----------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH-----------------------------   68 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~-----------------------------   68 (334)
                      .++|+||||||||++||..|++.+  .+|+|||+ +.+||.|. +++.|.+                             
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR   81 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHT--CCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCc
Confidence            479999999999999999999997  99999999 56676543 2322211                             


Q ss_pred             cchhHHHH-----------HHHHHhhcCCcEEEeCeEEc---eEEecccceeccCeEEEeccCCCCCCCC-CCCccCCCc
Q 019876           69 PETKIVIN-----------QFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALG-IPGEDLIGV  133 (334)
Q Consensus        69 ~~~~~~~~-----------~~~~~~~~~~i~~~~~~~v~---~~v~~~~~~~~yd~lIlATGs~~p~~~~-ipG~~~~~v  133 (334)
                      .....+..           .+..++++.+++++.+..+.   ..+.+.+..+.||+||||||+ .|+.|+ +|. +. .+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs-~p~~~~~~~~-~~-~v  158 (458)
T 1lvl_A           82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGS-SSVELPMLPL-GG-PV  158 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCE-EECCBTTBCC-BT-TE
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCC-CCCCCCCCCc-cC-cE
Confidence            01112211           23356677899998887542   245554545689999999999 577665 552 22 45


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++..++..    ..         ..+++|+|||+|++|+|+|..|++                    .|. +|+++++++
T Consensus       159 ~~~~~~~~----~~---------~~~~~vvViGgG~~g~e~A~~l~~--------------------~g~-~Vtlv~~~~  204 (458)
T 1lvl_A          159 ISSTEALA----PK---------ALPQHLVVVGGGYIGLELGIAYRK--------------------LGA-QVSVVEARE  204 (458)
T ss_dssp             ECHHHHTC----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------HTC-EEEEECSSS
T ss_pred             ecHHHHhh----hh---------ccCCeEEEECcCHHHHHHHHHHHH--------------------CCC-eEEEEEcCC
Confidence            55443321    11         146899999999999999999986                    565 699999999


Q ss_pred             ccccCCCH---HHHHHHHcCCceEEEEccC
Q 019876          214 PVQAACTA---KELREILGIKNLYVHIRED  240 (334)
Q Consensus       214 ~~~~~~~~---~~~~~~l~~~gv~~~~~~~  240 (334)
                      .++..+++   +.+.+.++..||+++++..
T Consensus       205 ~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~  234 (458)
T 1lvl_A          205 RILPTYDSELTAPVAESLKKLGIALHLGHS  234 (458)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHHTCEEETTCE
T ss_pred             ccccccCHHHHHHHHHHHHHCCCEEEECCE
Confidence            88876665   4566677788999987644

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.83  E-value=3.7e-20  Score=180.53  Aligned_cols=163  Identities=16%  Similarity=0.137  Sum_probs=109.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcC--------CCCCcccccc-ccCCCC--------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR--------LPTPFGLVRS-GVAPDH--------------------   68 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~--------~~~~gg~~~~-~~~p~~--------------------   68 (334)
                      ..++|+||||||||++||..|++.+  .+|+|||+        ...+||.|.+ +|.|.+                    
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~   82 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLG--KKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW   82 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence            3579999999999999999999997  99999997        3456775432 332211                    


Q ss_pred             -------cchhHHHH-----------HHHHHhhcCCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCC
Q 019876           69 -------PETKIVIN-----------QFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        69 -------~~~~~~~~-----------~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~  122 (334)
                             .....+..           .+...+...+++++.+....     ..+...++   .+.||+||||||+ .|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~  161 (488)
T 3dgz_A           83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGG-RPRY  161 (488)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCE-EECC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCC-CCCC
Confidence                   11111111           12334556788887665431     12333333   4689999999999 6888


Q ss_pred             CC-CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC
Q 019876          123 LG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS  201 (334)
Q Consensus       123 ~~-ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~  201 (334)
                      |+ +||.+.. +++..++.    ...         ..+++++|||+|++|+|+|..|++                    .
T Consensus       162 p~~i~G~~~~-~~~~~~~~----~~~---------~~~~~vvViGgG~ig~E~A~~l~~--------------------~  207 (488)
T 3dgz_A          162 PTQVKGALEY-GITSDDIF----WLK---------ESPGKTLVVGASYVALECAGFLTG--------------------I  207 (488)
T ss_dssp             CSSCBTHHHH-CBCHHHHT----TCS---------SCCCSEEEECCSHHHHHHHHHHHH--------------------T
T ss_pred             CCCCCCcccc-cCcHHHHH----hhh---------hcCCeEEEECCCHHHHHHHHHHHH--------------------c
Confidence            88 9997532 23333332    111         146789999999999999999996                    6


Q ss_pred             CcceEEEEeecCccccCC
Q 019876          202 SIRKVYLVGRRGPVQAAC  219 (334)
Q Consensus       202 ~~~~Vtiv~r~~~~~~~~  219 (334)
                      |. +||+++|.. ++..+
T Consensus       208 g~-~Vtlv~~~~-~l~~~  223 (488)
T 3dgz_A          208 GL-DTTVMMRSI-PLRGF  223 (488)
T ss_dssp             TC-CEEEEESSC-SSTTS
T ss_pred             CC-ceEEEEcCc-ccccC
Confidence            75 599999864 44333

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.82  E-value=2.3e-19  Score=167.80  Aligned_cols=157  Identities=16%  Similarity=0.134  Sum_probs=106.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCcccccc-----------------ccC---------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRS-----------------GVA---------------   65 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~~-----------------~~~---------------   65 (334)
                      .++|+|||||++|+++|..|++.+  . +|+|||+++ +||.|.+                 ++.               
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g--~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   80 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFG--ITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTF   80 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcC--CCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccc
Confidence            468999999999999999999987  7 999999987 6665421                 110               


Q ss_pred             -CCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--------eEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccch
Q 019876           66 -PDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA  136 (334)
Q Consensus        66 -p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--------~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~  136 (334)
                       ..+.....+..++.+++++.+++++.++.+.        ..+...+..+.||+||+|||++ +. |.+|+   ..+++.
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~-~~-p~ip~---~~~~~~  155 (369)
T 3d1c_A           81 NEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDY-NF-PKKPF---KYGIHY  155 (369)
T ss_dssp             CCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCST-TS-BCCCS---SSCEEG
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCC-Cc-cCCCC---Cceech
Confidence             0011224566677777788899998876442        1344444457899999999995 43 45666   123332


Q ss_pred             hhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      ..+.       +..     ...+++|+|||+|++|+|+|..|++                    .+. +|++++|++.+.
T Consensus       156 ~~~~-------~~~-----~~~~~~vvVvG~G~~g~e~a~~l~~--------------------~g~-~V~lv~~~~~~~  202 (369)
T 3d1c_A          156 SEIE-------DFD-----NFNKGQYVVIGGNESGFDAAYQLAK--------------------NGS-DIALYTSTTGLN  202 (369)
T ss_dssp             GGCS-------CGG-----GSCSSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECC-----
T ss_pred             hhcC-------Chh-----hcCCCEEEEECCCcCHHHHHHHHHh--------------------cCC-eEEEEecCCCCC
Confidence            2211       110     1257899999999999999999986                    565 699999987664

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.82  E-value=1e-19  Score=178.81  Aligned_cols=182  Identities=16%  Similarity=0.222  Sum_probs=126.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC--------CCcccccc-ccCCCC---------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGLVRS-GVAPDH---------------------   68 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~--------~~gg~~~~-~~~p~~---------------------   68 (334)
                      .++|+||||||||++||..|++.+  .+|+|||+.+        .+||.|.+ +|.|.+                     
T Consensus        32 ~~DVvVIGgGpaGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~  109 (519)
T 3qfa_A           32 DYDLIIIGGGSGGLAAAKEAAQYG--KKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK  109 (519)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence            479999999999999999999997  9999999854        56775432 333311                     


Q ss_pred             ------cchhHHHH-----------HHHHHhhcCCcEEEeCeEEc-----eEEecccc---eeccCeEEEeccCCCCCCC
Q 019876           69 ------PETKIVIN-----------QFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        69 ------~~~~~~~~-----------~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~---~~~yd~lIlATGs~~p~~~  123 (334)
                            .....+..           .+...++..+++++.+....     ..+...++   .+.||+||||||+ .|+.|
T Consensus       110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs-~p~~p  188 (519)
T 3qfa_A          110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGE-RPRYL  188 (519)
T ss_dssp             CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCE-EECCC
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCC-CcCCC
Confidence                  11111111           12234556789888775431     12333333   4689999999999 69989


Q ss_pred             CCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc
Q 019876          124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI  203 (334)
Q Consensus       124 ~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~  203 (334)
                      ++||.+. .+++..++.    ...         ...++++|||+|++|+|+|..|++                    .|.
T Consensus       189 ~i~G~~~-~~~t~~~~~----~l~---------~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G~  234 (519)
T 3qfa_A          189 GIPGDKE-YCISSDDLF----SLP---------YCPGKTLVVGASYVALECAGFLAG--------------------IGL  234 (519)
T ss_dssp             CCTTHHH-HCBCHHHHT----TCS---------SCCCSEEEECCSHHHHHHHHHHHH--------------------TTC
T ss_pred             CCCCccC-ceEcHHHHh----hhh---------hcCCeEEEECCcHHHHHHHHHHHH--------------------cCC
Confidence            9999643 233333332    111         145789999999999999999996                    676


Q ss_pred             ceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEcc
Q 019876          204 RKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIRE  239 (334)
Q Consensus       204 ~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~  239 (334)
                       +||+++|. .++..+++   +.+.+.|+..||+++.+.
T Consensus       235 -~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~v~~~~  271 (519)
T 3qfa_A          235 -DVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQF  271 (519)
T ss_dssp             -CEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEEESE
T ss_pred             -eEEEEecc-cccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence             59999985 66677765   456677888999998874

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.82  E-value=3.5e-20  Score=180.95  Aligned_cols=164  Identities=16%  Similarity=0.238  Sum_probs=109.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCC--------------------------cch
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDH--------------------------PET   71 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~--------------------------~~~   71 (334)
                      .++|+||||||||++||..|++.+  .+|+|||+++ +||.+ ++||.|.+                          ...
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G--~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   84 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHT--DKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNG   84 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTC--SCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCH
Confidence            379999999999999999999997  9999999975 66654 22332221                          111


Q ss_pred             hHHHHHHHH-----------Hhhc-CCcEEEeCeEE---ceEEeccc-ceeccCeEEEeccCCCCCCCCCCCccCCCccc
Q 019876           72 KIVINQFSR-----------VVQH-ERCSFFGNVTL---GSSVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDLIGVHS  135 (334)
Q Consensus        72 ~~~~~~~~~-----------~~~~-~~i~~~~~~~v---~~~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~  135 (334)
                      .++..++..           .+.. .+++++.+...   ...+.+.+ ..+.||+||||||+ .|..|++++...+++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs-~p~~p~~~~~~~~~v~t  163 (492)
T 3ic9_A           85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGS-RPNYPEFLAAAGSRLLT  163 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCE-ECCCCHHHHTTGGGEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCC-CCcCCCCCCccCCcEEc
Confidence            222222211           1111 13334433221   23455533 34689999999999 58888776655556776


Q ss_pred             hhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +.++..    ..         ..+++|+|||+|++|+|+|..|++                    .|. +||+++|++.+
T Consensus       164 ~~~~~~----~~---------~~~k~vvViGgG~ig~E~A~~l~~--------------------~g~-~Vtlv~~~~~~  209 (492)
T 3ic9_A          164 NDNLFE----LN---------DLPKSVAVFGPGVIGLELGQALSR--------------------LGV-IVKVFGRSGSV  209 (492)
T ss_dssp             HHHHTT----CS---------SCCSEEEEESSCHHHHHHHHHHHH--------------------TTC-EEEEECCTTCC
T ss_pred             HHHHhh----hh---------hcCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEEECCcc
Confidence            655432    11         147999999999999999999996                    665 69999999887


Q ss_pred             ccCCC
Q 019876          216 QAACT  220 (334)
Q Consensus       216 ~~~~~  220 (334)
                      +..++
T Consensus       210 l~~~d  214 (492)
T 3ic9_A          210 ANLQD  214 (492)
T ss_dssp             TTCCC
T ss_pred             cccCC
Confidence            64443

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.82  E-value=1.4e-19  Score=175.33  Aligned_cols=162  Identities=15%  Similarity=0.175  Sum_probs=117.4

Q ss_pred             CeEEEECCchHHHHHHHHHhh---cCCCCe---EEEEcCCCCCccccccc----c-------------------------
Q 019876           20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQ---VDIIDRLPTPFGLVRSG----V-------------------------   64 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~---~~~~~~---v~vie~~~~~gg~~~~~----~-------------------------   64 (334)
                      ++|+|||||+||++||..|++   .+  .+   |+|||+.+.+||.|.+.    +                         
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G--~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~   80 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKG--AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLE   80 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTT--CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcC--CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcc
Confidence            699999999999999999999   76  88   99999998899888652    1                         


Q ss_pred             C-------------CCCcchhHHHHHHHHHhhcCCcE--EEeCeEEc------e----EEeccc------ceeccCeEEE
Q 019876           65 A-------------PDHPETKIVINQFSRVVQHERCS--FFGNVTLG------S----SVSLSE------LRQLYHVVVL  113 (334)
Q Consensus        65 ~-------------p~~~~~~~~~~~~~~~~~~~~i~--~~~~~~v~------~----~v~~~~------~~~~yd~lIl  113 (334)
                      +             +.+....++..++.+++++.+++  ++.++.|.      .    .|++.+      ....||+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVv  160 (464)
T 2xve_A           81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVC  160 (464)
T ss_dssp             BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEE
Confidence            0             11222346677777877777876  77676542      1    344433      2358999999


Q ss_pred             eccCC-CCCCCCCCCccC-CC-ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccc
Q 019876          114 AYGAE-SDRALGIPGEDL-IG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDI  190 (334)
Q Consensus       114 ATGs~-~p~~~~ipG~~~-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~  190 (334)
                      |||.+ .|+.|++||.+. ++ +++..++.    ..        ....+++|+|||+|++|+|+|..|++          
T Consensus       161 AtG~~s~p~~p~ipG~~~~~g~~~hs~~~~----~~--------~~~~~k~VvVVG~G~sg~eiA~~l~~----------  218 (464)
T 2xve_A          161 CTGHFSTPYVPEFEGFEKFGGRILHAHDFR----DA--------LEFKDKTVLLVGSSYSAEDIGSQCYK----------  218 (464)
T ss_dssp             CCCSSSSBCCCCCBTTTTCCSEEEEGGGCC----CG--------GGGTTSEEEEECCSTTHHHHHHHHHH----------
T ss_pred             CCCCCCCCccCCCCCcccCCceEEehhhhC----CH--------hHcCCCEEEEEcCCCCHHHHHHHHHH----------
Confidence            99942 588889999763 33 33332221    11        01268999999999999999999996          


Q ss_pred             cHHHHHHHhcCCcceEEEEeecCccc
Q 019876          191 ASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       191 ~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                                .+. +|++++|++.++
T Consensus       219 ----------~g~-~V~li~~~~~~~  233 (464)
T 2xve_A          219 ----------YGA-KKLISCYRTAPM  233 (464)
T ss_dssp             ----------TTC-SEEEEECSSCCC
T ss_pred             ----------hCC-eEEEEEECCCCC
Confidence                      565 699999987654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.82  E-value=4e-19  Score=160.87  Aligned_cols=175  Identities=14%  Similarity=0.153  Sum_probs=127.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc--cccCCC--CcchhHHHHHHHHHhhcC-CcEEEeCeE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR--SGVAPD--HPETKIVINQFSRVVQHE-RCSFFGNVT   94 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~--~~~~p~--~~~~~~~~~~~~~~~~~~-~i~~~~~~~   94 (334)
                      ++|+|||||++|+++|..|++.+  .+|+|||+.+..+....  ++. +.  .....++..++.+.+.+. +++++.+..
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v   79 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRAR--KNILLVDAGERRNRFASHSHGF-LGQDGKAPGEIIAEARRQIERYPTIHWVEGRV   79 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCCGGGGCSCCCSS-TTCTTCCHHHHHHHHHHHHTTCTTEEEEESCE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhhcCC-cCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEE
Confidence            68999999999999999999997  89999999765443321  122 22  234557778888888776 788876644


Q ss_pred             Ece-------EEecccce-eccCeEEEeccCCCCCCCCCCCccC---CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEE
Q 019876           95 LGS-------SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAV  163 (334)
Q Consensus        95 v~~-------~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vv  163 (334)
                      ...       .+.+.++. +.||+||+|||+ .|+.|++||.+.   .+++.+. +..   ..         ...+++|+
T Consensus        80 ~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~-~~~~~~~~g~~~~~~~~~~~~~-~~~---~~---------~~~~~~v~  145 (297)
T 3fbs_A           80 TDAKGSFGEFIVEIDGGRRETAGRLILAMGV-TDELPEIAGLRERWGSAVFHCP-YCH---GY---------ELDQGKIG  145 (297)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEEEEEECCCC-EEECCCCBTTGGGBTTTEESCH-HHH---TG---------GGTTCEEE
T ss_pred             EEEEEcCCeEEEEECCCCEEEcCEEEECCCC-CCCCCCCCCchhhcCCeeEEcc-cCc---ch---------hhcCCEEE
Confidence            321       34444443 689999999999 588888998763   3444332 111   10         12579999


Q ss_pred             EEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       164 VIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      |||+|++|+|+|..|.+                    .+  +|+++.++..    ...+.+.+.|+..||+++.
T Consensus       146 vvG~G~~~~e~a~~l~~--------------------~g--~v~~v~~~~~----~~~~~~~~~l~~~gv~i~~  193 (297)
T 3fbs_A          146 VIAASPMAIHHALMLPD--------------------WG--ETTFFTNGIV----EPDADQHALLAARGVRVET  193 (297)
T ss_dssp             EECCSTTHHHHHHHGGG--------------------TS--EEEEECTTTC----CCCHHHHHHHHHTTCEEEC
T ss_pred             EEecCccHHHHHHHhhh--------------------cC--cEEEEECCCC----CCCHHHHHHHHHCCcEEEc
Confidence            99999999999999996                    55  7999998865    2245677888899999984

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.81  E-value=3.7e-19  Score=173.24  Aligned_cols=163  Identities=18%  Similarity=0.274  Sum_probs=108.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC---C------CCcccccc-ccCCC--------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---P------TPFGLVRS-GVAPD--------------------   67 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~---~------~~gg~~~~-~~~p~--------------------   67 (334)
                      ..++|+||||||||++||..|++.+  .+|+|||+.   +      ..||.|.+ +|.|.                    
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g   85 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNG--ARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYG   85 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--CEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcC
Confidence            4579999999999999999999997  999999942   1      25665532 33221                    


Q ss_pred             -------CcchhHHHHH-----------HHHHhhcCCcEEEeCeEEc-----eEEecccc--eeccCeEEEeccCCCCCC
Q 019876           68 -------HPETKIVINQ-----------FSRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        68 -------~~~~~~~~~~-----------~~~~~~~~~i~~~~~~~v~-----~~v~~~~~--~~~yd~lIlATGs~~p~~  122 (334)
                             ......+..+           +...+...+++++.+....     ..+...++  .+.||+||||||+ .|+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs-~p~~  164 (483)
T 3dgh_A           86 WNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGG-RPRY  164 (483)
T ss_dssp             BCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCE-EECC
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCC-CcCC
Confidence                   1111222111           2233456688887765431     12333333  4689999999999 6998


Q ss_pred             CCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC
Q 019876          123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS  202 (334)
Q Consensus       123 ~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~  202 (334)
                      |++||.+... ++..++.    ...         ..+++++|||+|++|+|+|..|++                    .|
T Consensus       165 p~i~G~~~~~-~~~~~~~----~~~---------~~~~~vvViGgG~~g~E~A~~l~~--------------------~g  210 (483)
T 3dgh_A          165 PDIPGAVEYG-ITSDDLF----SLD---------REPGKTLVVGAGYIGLECAGFLKG--------------------LG  210 (483)
T ss_dssp             CSSTTHHHHC-BCHHHHT----TCS---------SCCCEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred             CCCCCccccc-CcHHHHh----hhh---------hcCCcEEEECCCHHHHHHHHHHHH--------------------cC
Confidence            9999975332 3333332    111         146899999999999999999996                    66


Q ss_pred             cceEEEEeecCccccCC
Q 019876          203 IRKVYLVGRRGPVQAAC  219 (334)
Q Consensus       203 ~~~Vtiv~r~~~~~~~~  219 (334)
                      . +|++++|. .++..+
T Consensus       211 ~-~Vtlv~~~-~~l~~~  225 (483)
T 3dgh_A          211 Y-EPTVMVRS-IVLRGF  225 (483)
T ss_dssp             C-EEEEEESS-CSSTTS
T ss_pred             C-EEEEEeCC-CCCccc
Confidence            5 69999884 444333

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.81  E-value=3.3e-19  Score=171.84  Aligned_cols=164  Identities=20%  Similarity=0.252  Sum_probs=116.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC--eEEEEcCCCCCccccccccC-------C----------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLPTPFGLVRSGVA-------P----------------------   66 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~--~v~vie~~~~~gg~~~~~~~-------p----------------------   66 (334)
                      ..++|+|||||++|+++|..|++.+  .  +|+|||+.+.+||.|.+...       |                      
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G--~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~   82 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEK--AFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   82 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTT--CCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcC--CCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence            4579999999999999999999997  6  99999999888888766310       0                      


Q ss_pred             ---------------------------CCcchhHHHHHHHHHhhcCCcEEEeCeEEce--------EEeccc---c----
Q 019876           67 ---------------------------DHPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSE---L----  104 (334)
Q Consensus        67 ---------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~~---~----  104 (334)
                                                 .+.....+..++.++++..+..+++++.|..        .+++.+   +    
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence                                       0111235666777777766667777766521        344433   3    


Q ss_pred             eeccCeEEEeccCCC-CCCCCCCCccC-----CC-ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHH
Q 019876          105 RQLYHVVVLAYGAES-DRALGIPGEDL-----IG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI  177 (334)
Q Consensus       105 ~~~yd~lIlATGs~~-p~~~~ipG~~~-----~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~  177 (334)
                      ...||+||+|||+++ |+.|++||.+.     ++ ++++.++.       +.     ....+++|+|||+|++|+|+|..
T Consensus       163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~-------~~-----~~~~~k~VvVvG~G~sg~e~A~~  230 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFR-------EP-----ELFVGESVLVVGGASSANDLVRH  230 (447)
T ss_dssp             EEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCC-------CG-----GGGTTCCEEEECSSHHHHHHHHH
T ss_pred             EEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccC-------Ch-----hhcCCCEEEEEccCcCHHHHHHH
Confidence            368999999999843 77788998652     22 33332221       10     11268999999999999999999


Q ss_pred             HccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          178 LLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       178 L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      |++                    .+.+.|+++.|++.+
T Consensus       231 l~~--------------------~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          231 LTP--------------------VAKHPIYQSLLGGGD  248 (447)
T ss_dssp             HTT--------------------TSCSSEEEECTTCCS
T ss_pred             HHH--------------------HhCCcEEEEeCCCCc
Confidence            996                    454339999998765

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.81  E-value=2.3e-19  Score=176.91  Aligned_cols=163  Identities=18%  Similarity=0.196  Sum_probs=117.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHh-hcCCCCeEEEEcCCCCCccccccccCCCC---------------------------c
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTL-KAHQEAQVDIIDRLPTPFGLVRSGVAPDH---------------------------P   69 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~-~~~~~~~v~vie~~~~~gg~~~~~~~p~~---------------------------~   69 (334)
                      ..++|+|||||++|+++|..|+ +.+  .+|+|||+++.+||.|....+|+.                           .
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G--~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   84 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELG--LTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYI   84 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC--CCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCC--CCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCC
Confidence            3469999999999999999999 776  899999999888887754222221                           1


Q ss_pred             chhHHHHHHHHHhhcCCc--EEEeCeEEce----------EEecccce-eccCeEEEeccC-CCCCCCCCCCcc-CCCc-
Q 019876           70 ETKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED-LIGV-  133 (334)
Q Consensus        70 ~~~~~~~~~~~~~~~~~i--~~~~~~~v~~----------~v~~~~~~-~~yd~lIlATGs-~~p~~~~ipG~~-~~~v-  133 (334)
                      ...++..++...+++.++  +++.++.|..          .+.+.+++ +.||+||+|||. ..|+.|++||.+ ..|. 
T Consensus        85 ~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~  164 (540)
T 3gwf_A           85 TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGET  164 (540)
T ss_dssp             EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEE
T ss_pred             CHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCE
Confidence            234677778888888777  6776655421          34444444 689999999995 258889999976 2221 


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++...+       .+.     ....+|+|+|||+|.+|+|+|..|++                    .+ .+||+++|++
T Consensus       165 ~~~~~~-------~~~-----~~~~~krV~VIG~G~sgve~a~~l~~--------------------~~-~~Vtv~~r~~  211 (540)
T 3gwf_A          165 IHTAAW-------PEG-----KSLAGRRVGVIGTGSTGQQVITSLAP--------------------EV-EHLTVFVRTP  211 (540)
T ss_dssp             EEGGGC-------CSS-----CCCTTSEEEEECCSHHHHHHHHHHTT--------------------TC-SEEEEEESSC
T ss_pred             EEeecC-------CCc-----cccccceEEEECCCchHHHHHHHHHh--------------------hC-CEEEEEECCC
Confidence            211111       110     11368999999999999999999996                    44 5799999998


Q ss_pred             cc
Q 019876          214 PV  215 (334)
Q Consensus       214 ~~  215 (334)
                      .+
T Consensus       212 ~~  213 (540)
T 3gwf_A          212 QY  213 (540)
T ss_dssp             CC
T ss_pred             Cc
Confidence            74

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.81  E-value=4.7e-19  Score=171.28  Aligned_cols=173  Identities=14%  Similarity=0.046  Sum_probs=112.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCC---CeEEEEcCCCCCccccc---cc--c------------CCC-----------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQE---AQVDIIDRLPTPFGLVR---SG--V------------APD-----------   67 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~---~~v~vie~~~~~gg~~~---~~--~------------~p~-----------   67 (334)
                      .++|+|||||++|+++|..|++.++.   .+|+|||+++.+|....   .+  +            .|.           
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~  109 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHK  109 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhh
Confidence            35899999999999999999998644   89999999986541110   00  0            010           


Q ss_pred             -------------CcchhHHHHHHHHHhhcCCcEEEeCeEEce-------------EEecccc-----eeccCeEEEecc
Q 019876           68 -------------HPETKIVINQFSRVVQHERCSFFGNVTLGS-------------SVSLSEL-----RQLYHVVVLAYG  116 (334)
Q Consensus        68 -------------~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-------------~v~~~~~-----~~~yd~lIlATG  116 (334)
                                   ++...++..++.++.+..+++++.++.|..             .+...++     .+.||+||+|||
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG  189 (463)
T 3s5w_A          110 HDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG  189 (463)
T ss_dssp             TTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCC
T ss_pred             cCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCC
Confidence                         111234556667777777888887765421             2333333     468999999999


Q ss_pred             CCCCCCCC-CCCccCC-CccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHH
Q 019876          117 AESDRALG-IPGEDLI-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYA  194 (334)
Q Consensus       117 s~~p~~~~-ipG~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~  194 (334)
                      + .|..|+ +++.... .+++...+........      .....+++|+|||+|++|+|+|..|++              
T Consensus       190 ~-~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~vvVvGgG~sg~e~a~~l~~--------------  248 (463)
T 3s5w_A          190 G-TPRIPQVFRALKGDGRVFHHSQYLEHMAKQP------CSSGKPMKIAIIGGGQSAAEAFIDLND--------------  248 (463)
T ss_dssp             C-EECCCGGGGGGTTCTTEEEGGGHHHHHCC-------------CEEEEEECCSHHHHHHHHHHHH--------------
T ss_pred             C-CCCCcchhhhcCCCCcEEECHHHHhhHHHhh------hcccCCCeEEEECCCHhHHHHHHHHHh--------------
Confidence            9 577665 3333222 4555555554332211      011257999999999999999999986              


Q ss_pred             HHHHhcCCcceEEEEeecCcccc
Q 019876          195 WTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       195 ~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                           ..+..+|++++|++.+++
T Consensus       249 -----~~~~~~Vt~v~r~~~~~p  266 (463)
T 3s5w_A          249 -----SYPSVQADMILRASALKP  266 (463)
T ss_dssp             -----HCTTEEEEEECSSSSCCB
T ss_pred             -----cCCCCeEEEEEeCCCCcC
Confidence                 223467999999987654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.80  E-value=2.4e-19  Score=177.14  Aligned_cols=167  Identities=15%  Similarity=0.219  Sum_probs=119.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCC---------------------------Ccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~---------------------------~~~   70 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|||+++.+||.|....+|+                           +..
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~   97 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQG--LTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYAT   97 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCB
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCC
Confidence            3579999999999999999999986  89999999988888775322121                           112


Q ss_pred             hhHHHHHHHHHhhcCCc--EEEeCeEEce----------EEecccce-eccCeEEEecc--CCCCCCCCCCCcc-CCC-c
Q 019876           71 TKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYG--AESDRALGIPGED-LIG-V  133 (334)
Q Consensus        71 ~~~~~~~~~~~~~~~~i--~~~~~~~v~~----------~v~~~~~~-~~yd~lIlATG--s~~p~~~~ipG~~-~~~-v  133 (334)
                      ..++..++...+++.++  +++.++.|..          .+.+.++. +.||+||+|||  + .|..|++||.+ ..| +
T Consensus        98 ~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s-~p~~p~ipG~~~f~g~~  176 (549)
T 4ap3_A           98 QPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLS-NANTPAFDGLDRFTGDI  176 (549)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEE-ECCCCCCTTGGGCCSEE
T ss_pred             HHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCC-CCCCCCCCCcccCCCce
Confidence            34677788888888777  6776655421          34444444 68999999999  5 58889999976 233 2


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++...+.   ....       ++ .+|+|+|||+|.+|+|+|..|++                    .+ ++||+++|++
T Consensus       177 ~~~~~~~---~~~~-------~~-~~krV~VIG~G~sgve~a~~l~~--------------------~~-~~Vtv~~r~~  224 (549)
T 4ap3_A          177 VHTARWP---HDGV-------DF-TGKRVGVIGTGSSGIQSIPIIAE--------------------QA-EQLFVFQRSA  224 (549)
T ss_dssp             EEGGGCC---TTCC-------CC-BTCEEEEECCSHHHHHHHHHHHH--------------------HB-SEEEEEESSC
T ss_pred             EEecccc---cccc-------cc-CCCEEEEECCCchHHHHHHHHHh--------------------hC-CEEEEEECCC
Confidence            2221110   0011       12 68999999999999999999996                    34 5799999998


Q ss_pred             ccccCC
Q 019876          214 PVQAAC  219 (334)
Q Consensus       214 ~~~~~~  219 (334)
                      .+..+.
T Consensus       225 ~~ilp~  230 (549)
T 4ap3_A          225 NYSIPA  230 (549)
T ss_dssp             CCEEEC
T ss_pred             CccccC
Confidence            754433

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.79  E-value=6.3e-19  Score=173.96  Aligned_cols=169  Identities=18%  Similarity=0.185  Sum_probs=115.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCC---------------------------cc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH---------------------------PE   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~---------------------------~~   70 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|||+++.+||.|....+|+.                           ..
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g--~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~   85 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAG--MKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFAS   85 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCB
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCC
Confidence            4579999999999999999999976  899999999999988765444421                           12


Q ss_pred             hhHHHHHHHHHhhcCCc--EEEeCeEEce----------EEecccc-eeccCeEEEecc--CCCCCCCCCCCccC-CC-c
Q 019876           71 TKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSEL-RQLYHVVVLAYG--AESDRALGIPGEDL-IG-V  133 (334)
Q Consensus        71 ~~~~~~~~~~~~~~~~i--~~~~~~~v~~----------~v~~~~~-~~~yd~lIlATG--s~~p~~~~ipG~~~-~~-v  133 (334)
                      ..++..++....++.++  .++.++.|..          .+.+.++ .+.||+||+|||  + .|+.|++||.+. .+ +
T Consensus        86 ~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s-~p~~p~ipG~~~f~g~~  164 (545)
T 3uox_A           86 QPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLS-ASRMPDIKGIDSFKGES  164 (545)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCB-C---CCCTTGGGCCSEE
T ss_pred             HHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCC-CCcCCCCCCccccCCCe
Confidence            34667777777777666  5666654421          3444444 468999999999  5 588899999762 22 1


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      +....+...+...++     .....+|+|+|||+|.+|+|+|..|++                    . +++||+++|++
T Consensus       165 ~h~~~~~~~~~~~~~-----~~~~~~krV~VIG~G~tgve~a~~la~--------------------~-~~~Vtv~~r~~  218 (545)
T 3uox_A          165 FHSSRWPTDAEGAPK-----GVDFTGKRVGVIGTGATGVQIIPIAAE--------------------T-AKELYVFQRTP  218 (545)
T ss_dssp             EEGGGCCBCTTSCBS-----CCCCBTCEEEEECCSHHHHHHHHHHTT--------------------T-BSEEEEEESSC
T ss_pred             EEccccccccccccc-----ccccCCCeEEEECCCccHHHHHHHHHh--------------------h-CCEEEEEEcCC
Confidence            221111100000000     011268999999999999999999996                    3 46899999998


Q ss_pred             cc
Q 019876          214 PV  215 (334)
Q Consensus       214 ~~  215 (334)
                      .+
T Consensus       219 ~~  220 (545)
T 3uox_A          219 NW  220 (545)
T ss_dssp             CC
T ss_pred             Cc
Confidence            74

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.79  E-value=5.7e-20  Score=179.70  Aligned_cols=216  Identities=17%  Similarity=0.187  Sum_probs=127.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-ccccccccCCCCcchhHHHHHHHHH--hhcCCcEEEeC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRV--VQHERCSFFGN   92 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-gg~~~~~~~p~~~~~~~~~~~~~~~--~~~~~i~~~~~   92 (334)
                      ...+++|||||||+||+++|..|.+.+  ++|+|||++++. +..+.+.+..+.....++...+...  ....+++|+.+
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~~--~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~  116 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTKK--YNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA  116 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTTT--CEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhCC--CcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE
Confidence            445679999999999999999998875  999999998642 1111121212222222222222222  23457888766


Q ss_pred             eEEce-----EEecc---------------------cceeccCeEEEeccCCCCCCCCCCCccC-----CCccchhhHHH
Q 019876           93 VTLGS-----SVSLS---------------------ELRQLYHVVVLAYGAESDRALGIPGEDL-----IGVHSAREFVW  141 (334)
Q Consensus        93 ~~v~~-----~v~~~---------------------~~~~~yd~lIlATGs~~p~~~~ipG~~~-----~~v~~~~~~~~  141 (334)
                      .....     .+.++                     ..+++||+||||||+ .|..+++||.+.     ..+-.+..+..
T Consensus       117 ~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs-~~~~~~ipG~~e~a~~l~t~~dA~~ir~  195 (502)
T 4g6h_A          117 EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGA-EPNTFGIPGVTDYGHFLKEIPNSLEIRR  195 (502)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCC-EECCTTCTTHHHHCEECSSHHHHHHHHH
T ss_pred             EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCc-ccccCCccCcccccCCCCCHHHHHHHHH
Confidence            54321     22221                     224689999999999 588899999642     12222222111


Q ss_pred             HhcCCCCC----CCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc
Q 019876          142 WYNGHPDG----KNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA  217 (334)
Q Consensus       142 ~~~~~~~~----~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~  217 (334)
                      .+....+.    ....+......+++|||||++|+|+|..|+....+.    +. .....+. .. .+|+++++.++++.
T Consensus       196 ~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~----l~-~~~~~~~-~~-~~V~lve~~~~il~  268 (502)
T 4g6h_A          196 TFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQD----LR-KFLPALA-EE-VQIHLVEALPIVLN  268 (502)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHT----HH-HHCHHHH-HH-CEEEEECSSSSSST
T ss_pred             HHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHH----HH-hhccccc-cc-ceeEEecccccccc
Confidence            11000000    000000012358999999999999999987411000    00 0000111 12 36999999999998


Q ss_pred             CCCH---HHHHHHHcCCceEEEEccCc
Q 019876          218 ACTA---KELREILGIKNLYVHIREDD  241 (334)
Q Consensus       218 ~~~~---~~~~~~l~~~gv~~~~~~~~  241 (334)
                      .|++   +.+.+.|++.||+++++...
T Consensus       269 ~~~~~~~~~~~~~L~~~GV~v~~~~~v  295 (502)
T 4g6h_A          269 MFEKKLSSYAQSHLENTSIKVHLRTAV  295 (502)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred             CCCHHHHHHHHHHHHhcceeeecCceE
Confidence            8886   46677888999999987544

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.79  E-value=1.6e-18  Score=160.73  Aligned_cols=163  Identities=15%  Similarity=0.172  Sum_probs=117.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc-------------CCC---------CcchhHHHH
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------------APD---------HPETKIVIN   76 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~-------------~p~---------~~~~~~~~~   76 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||+.+.+||.|.+..             .++         +....++..
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSG--LSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLA   80 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSS--CCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHH
Confidence            368999999999999999999997  99999999988888765311             111         112256778


Q ss_pred             HHHHHhhcCCcEEEeCeEEce--------E-EecccceeccCeEEEeccCC-CCCCCCCCCccC-CC-ccchhhHHHHhc
Q 019876           77 QFSRVVQHERCSFFGNVTLGS--------S-VSLSELRQLYHVVVLAYGAE-SDRALGIPGEDL-IG-VHSAREFVWWYN  144 (334)
Q Consensus        77 ~~~~~~~~~~i~~~~~~~v~~--------~-v~~~~~~~~yd~lIlATGs~-~p~~~~ipG~~~-~~-v~~~~~~~~~~~  144 (334)
                      ++.+++++.+++++.++.+..        . +...++.+.||+||+|||++ .|..|++||.+. .+ ++....+     
T Consensus        81 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~-----  155 (357)
T 4a9w_A           81 YLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHY-----  155 (357)
T ss_dssp             HHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGC-----
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccC-----
Confidence            888888888999888765421        2 55556667999999999963 477788998752 11 1111111     


Q ss_pred             CCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC-cccc
Q 019876          145 GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG-PVQA  217 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~-~~~~  217 (334)
                        .+.     ....+++|+|||+|++|+|+|..|++                    .+  +|+++.|+. .++.
T Consensus       156 --~~~-----~~~~~~~v~VvG~G~~g~e~a~~l~~--------------------~~--~v~~v~~~~~~~~~  200 (357)
T 4a9w_A          156 --STP-----APFAGMRVAIIGGGNSGAQILAEVST--------------------VA--ETTWITQHEPAFLA  200 (357)
T ss_dssp             --CCS-----GGGTTSEEEEECCSHHHHHHHHHHTT--------------------TS--EEEEECSSCCCBCC
T ss_pred             --CCh-----hhcCCCEEEEECCCcCHHHHHHHHHh--------------------hC--CEEEEECCCCeecc
Confidence              111     11267999999999999999999996                    44  499999984 4433

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.79  E-value=8.1e-19  Score=175.21  Aligned_cols=184  Identities=15%  Similarity=0.207  Sum_probs=122.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC-C-------CCccccc-cccCCCC-------------------
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-P-------TPFGLVR-SGVAPDH-------------------   68 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~-~-------~~gg~~~-~~~~p~~-------------------   68 (334)
                      ...++|+||||||||++||.+|++.+  .+|+|||+. +       ..||.+. .++.|.+                   
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g--~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g  182 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYG--AKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG  182 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccEEEECCCccHHHHHHHHHhCC--CeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence            34689999999999999999999997  999999973 2       2555432 1222211                   


Q ss_pred             ---------cchhHHHHHH-----------HHHhhcCCcEEEeCeEE--c-eEE--ecccc---eeccCeEEEeccCCCC
Q 019876           69 ---------PETKIVINQF-----------SRVVQHERCSFFGNVTL--G-SSV--SLSEL---RQLYHVVVLAYGAESD  120 (334)
Q Consensus        69 ---------~~~~~~~~~~-----------~~~~~~~~i~~~~~~~v--~-~~v--~~~~~---~~~yd~lIlATGs~~p  120 (334)
                               ....++..++           ...+...+++++.+...  + ..+  ...++   .+.||+||||||+ .|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs-~p  261 (598)
T 2x8g_A          183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGE-RP  261 (598)
T ss_dssp             CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCE-EE
T ss_pred             ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCC-CC
Confidence                     1112222222           12244568888765432  1 122  22233   4689999999999 69


Q ss_pred             CCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhc
Q 019876          121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG  200 (334)
Q Consensus       121 ~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~  200 (334)
                      +.|++||.+.. +++..++.    ...         ..+++|+|||||++|+|+|..|++                    
T Consensus       262 ~~p~i~G~~~~-~~~~~~~~----~~~---------~~~~~vvViGgG~~g~E~A~~l~~--------------------  307 (598)
T 2x8g_A          262 KYPEIPGAVEY-GITSDDLF----SLP---------YFPGKTLVIGASYVALECAGFLAS--------------------  307 (598)
T ss_dssp             CCCSSTTHHHH-CEEHHHHT----TCS---------SCCCSEEEECCSHHHHHHHHHHHH--------------------
T ss_pred             CCCCCCCcccc-eEcHHHHh----hCc---------cCCCEEEEECCCHHHHHHHHHHHH--------------------
Confidence            99999996432 22332221    111         146789999999999999999996                    


Q ss_pred             CCcceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEcc
Q 019876          201 SSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIRE  239 (334)
Q Consensus       201 ~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~  239 (334)
                      .|. +||+++|+ .++..+++   +.+.+.|+..||+++++.
T Consensus       308 ~g~-~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv~i~~~~  347 (598)
T 2x8g_A          308 LGG-DVTVMVRS-ILLRGFDQQMAEKVGDYMENHGVKFAKLC  347 (598)
T ss_dssp             TTC-CEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEEETE
T ss_pred             cCC-EEEEEECC-cCcCcCCHHHHHHHHHHHHhCCCEEEECC
Confidence            676 59999998 56666654   456667788899999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.74  E-value=8.2e-19  Score=171.26  Aligned_cols=172  Identities=15%  Similarity=0.109  Sum_probs=104.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc-ccc------ccccCCC---------Cc--------chhH
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GLV------RSGVAPD---------HP--------ETKI   73 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g-g~~------~~~~~p~---------~~--------~~~~   73 (334)
                      ..++|+|||||+||++||..|++.+++.+|+|||+++.++ ..+      .++..+.         +.        ...+
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   89 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence            4579999999999999999999886679999999987542 111      1110000         00        0000


Q ss_pred             HHHHHHHH--hhcCCcEEEeCeEEc------eEEecccc-eeccCeEEEeccCCCCCCCCCCCcc----CCCccchhhHH
Q 019876           74 VINQFSRV--VQHERCSFFGNVTLG------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED----LIGVHSAREFV  140 (334)
Q Consensus        74 ~~~~~~~~--~~~~~i~~~~~~~v~------~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~----~~~v~~~~~~~  140 (334)
                      ......++  +.+.+++++.++.+.      ..+.+.++ .+.||+||||||+ .|+.|+++|..    .++++..++..
T Consensus        90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs-~p~~~~~~~~~~~~~~~~v~~~~~~~  168 (493)
T 1m6i_A           90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGG-TPRSLSAIDRAGAEVKSRTTLFRKIG  168 (493)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCE-EECCCHHHHTSCHHHHHTEEECCSHH
T ss_pred             hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCC-CCCCCCCcccccccccCceEEEcCHH
Confidence            00000000  124578988875442      24555544 3689999999999 58877766532    23444332221


Q ss_pred             H--HhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          141 W--WYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       141 ~--~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      .  .+..         .+..+++|+|||+|++|+|+|..|++                ..++.|. +|+++++.+.++
T Consensus       169 d~~~l~~---------~~~~~~~vvViGgG~iG~E~A~~l~~----------------~~~~~g~-~V~~v~~~~~~~  220 (493)
T 1m6i_A          169 DFRSLEK---------ISREVKSITIIGGGFLGSELACALGR----------------KARALGT-EVIQLFPEKGNM  220 (493)
T ss_dssp             HHHHHHH---------HHHHCSEEEEECCSHHHHHHHHHHHH----------------HHHHHTC-EEEEECSSSSTT
T ss_pred             HHHHHHH---------HhhcCCeEEEECCCHHHHHHHHHHHh----------------hhhhcCC-EEEEEecCcccc
Confidence            1  0110         01247999999999999999999874                0111244 699998876543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.72  E-value=7.4e-17  Score=159.21  Aligned_cols=163  Identities=17%  Similarity=0.241  Sum_probs=114.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCC---------------------------Ccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~---------------------------~~~   70 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|||+.+.+||.|....+|+                           +..
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~   92 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYAS   92 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCB
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCC
Confidence            4579999999999999999999997  89999999988888775333232                           111


Q ss_pred             hhHHHHHHHHHhhcCC--cEEEeCeEEce----------EEecccc-eeccCeEEEeccCC-CCCCCCCCCcc-CCC--c
Q 019876           71 TKIVINQFSRVVQHER--CSFFGNVTLGS----------SVSLSEL-RQLYHVVVLAYGAE-SDRALGIPGED-LIG--V  133 (334)
Q Consensus        71 ~~~~~~~~~~~~~~~~--i~~~~~~~v~~----------~v~~~~~-~~~yd~lIlATGs~-~p~~~~ipG~~-~~~--v  133 (334)
                      ..++..++....++.+  ++++.++.|..          .+.+.++ .+.||+||+|||.. .|+.|++||.+ .+|  +
T Consensus        93 ~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~  172 (542)
T 1w4x_A           93 QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLY  172 (542)
T ss_dssp             HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEE
T ss_pred             HHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceE
Confidence            2345666666666554  45666654421          2334444 46899999999963 47888899975 344  3


Q ss_pred             cchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++. .+    ..  +.    .+ ..+|+|+|||+|.+|+|+|..|++                    .+ .+|+++.|++
T Consensus       173 hs~-~~----~~--~~----~~-~~gk~V~VIG~G~sg~e~a~~l~~--------------------~~-~~vtv~~r~~  219 (542)
T 1w4x_A          173 HTG-NW----PH--EP----VD-FSGQRVGVIGTGSSGIQVSPQIAK--------------------QA-AELFVFQRTP  219 (542)
T ss_dssp             EGG-GC----CS--SC----CC-CBTCEEEEECCSHHHHHHHHHHHH--------------------HB-SEEEEEESSC
T ss_pred             ECC-CC----CC--ch----hc-cCCCEEEEECCCccHHHHHHHHhh--------------------cC-ceEEEEEcCC
Confidence            322 11    10  10    01 268999999999999999999986                    34 5799999997


Q ss_pred             cc
Q 019876          214 PV  215 (334)
Q Consensus       214 ~~  215 (334)
                      .+
T Consensus       220 ~~  221 (542)
T 1w4x_A          220 HF  221 (542)
T ss_dssp             CC
T ss_pred             cc
Confidence            66

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.72  E-value=3.2e-18  Score=164.53  Aligned_cols=199  Identities=13%  Similarity=0.126  Sum_probs=126.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhh-cCCCCeEEEEcCCCCCccccc-cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTPFGLVR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~-~~~~~~v~vie~~~~~gg~~~-~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      +++|+|||||+||+++|..|++ .+++.+|+|||+++....... ..+..+.....++...+.++++..+++++.+....
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~   83 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQ   83 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEE
Confidence            4799999999999999999998 112499999999875321110 01112223344555556677778899998765442


Q ss_pred             -----eEEecccce-eccCeEEEeccCCCCCCCCCCCccCC-----CccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEE
Q 019876           97 -----SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLI-----GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL  165 (334)
Q Consensus        97 -----~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVI  165 (334)
                           ..+.++++. +.||+||+|||+ .|+.+++||.+..     .+++..+.........       .+..+++++||
T Consensus        84 id~~~~~V~~~~g~~i~~d~lviAtG~-~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~vVV  155 (437)
T 3sx6_A           84 IDAEAQNITLADGNTVHYDYLMIATGP-KLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQ-------ALLREPGPIVI  155 (437)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCC-EECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHH-------HHHHSCCCEEE
T ss_pred             EEcCCCEEEECCCCEEECCEEEECCCC-CcCcccCCCCCcccCcceecccccHHHHHHHHHH-------HHHhCCCEEEE
Confidence                 245555554 689999999999 5888889997642     2333322221111000       00123567899


Q ss_pred             cCCHH----H--HHHHHHHccCCcccccccccHHHHHHHhcCCcc---e-EEEEeecCccc----cCC--CHHHHHHHHc
Q 019876          166 GQGNV----A--LDVARILLRPTEELATTDIASYAWTALEGSSIR---K-VYLVGRRGPVQ----AAC--TAKELREILG  229 (334)
Q Consensus       166 G~G~~----g--~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---~-Vtiv~r~~~~~----~~~--~~~~~~~~l~  229 (334)
                      |+|..    |  +|+|..++.                .+++.|.+   + |+++++.+.+.    ..+  ..+.+.+.|+
T Consensus       156 GgG~~~g~~G~~~E~a~~la~----------------~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~  219 (437)
T 3sx6_A          156 GAMAGASCFGPAYEYAMIVAS----------------DLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLK  219 (437)
T ss_dssp             EECTTCCCCHHHHHHHHHHHH----------------HHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHH
T ss_pred             EcCCCCCcCcHHHHHHHHHHH----------------HHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHH
Confidence            98654    4  888866553                23335543   2 99999988652    222  2467788889


Q ss_pred             CCceEEEEccCc
Q 019876          230 IKNLYVHIREDD  241 (334)
Q Consensus       230 ~~gv~~~~~~~~  241 (334)
                      ..||+++.+...
T Consensus       220 ~~gI~~~~~~~v  231 (437)
T 3sx6_A          220 EEGIEAYTNCKV  231 (437)
T ss_dssp             HTTCEEECSEEE
T ss_pred             HCCCEEEcCCEE
Confidence            999999876543

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.68  E-value=2.8e-16  Score=153.28  Aligned_cols=141  Identities=18%  Similarity=0.171  Sum_probs=102.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc--CCCCc-chhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV--APDHP-ETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~--~p~~~-~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ++|+|||||++|+++|.+|++.   .+|+|||+++.+||.+.+..  ..++. ...++...+.+.+ ..+++++.+..+.
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~  184 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSAL  184 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEEC
T ss_pred             CCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEE
Confidence            5899999999999999999987   89999999998888775421  11111 2345555555555 6689888776652


Q ss_pred             e--------EEe-cccc---eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEE
Q 019876           97 S--------SVS-LSEL---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVI  164 (334)
Q Consensus        97 ~--------~v~-~~~~---~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvV  164 (334)
                      .        .+. ..+.   .+.||+||||||+ .|+.|++||.+.+++++..++....+...        ...+++++|
T Consensus       185 ~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~vvV  255 (493)
T 1y56_A          185 GVFDKGEYFLVPVVRGDKLIEILAKRVVLATGA-IDSTMLFENNDMPGVFRRDFALEVMNVWE--------VAPGRKVAV  255 (493)
T ss_dssp             CCEECSSSEEEEEEETTEEEEEEESCEEECCCE-EECCCCCTTTTSTTEEEHHHHHHHHHTSC--------BCSCSEEEE
T ss_pred             EEEcCCcEEEEEEecCCeEEEEECCEEEECCCC-CccCCCCCCCCCCCEEEcHHHHHHHHhcc--------cCCCCEEEE
Confidence            1        111 1222   3689999999999 58889999999999998776654332211        225799999


Q ss_pred             EcCCHHHHH
Q 019876          165 LGQGNVALD  173 (334)
Q Consensus       165 IG~G~~g~e  173 (334)
                      ||+|++|+|
T Consensus       256 iGgG~~gle  264 (493)
T 1y56_A          256 TGSKADEVI  264 (493)
T ss_dssp             ESTTHHHHH
T ss_pred             ECCCHHHHH
Confidence            999999998

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.67  E-value=6.8e-17  Score=153.76  Aligned_cols=195  Identities=13%  Similarity=0.090  Sum_probs=123.3

Q ss_pred             CeEEEECCchHHHHHHHHHhh-cCCCCeEEEEcCCCCCcccccc-ccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876           20 LRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-   96 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~-~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-   96 (334)
                      ++|+|||||++|+++|..|++ .+++.+|+|||+++..+..... ...++.....++...+.+.+++.+++++.+.... 
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   81 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI   81 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence            689999999999999999999 2224999999998764322111 1112222233444456667777899998874432 


Q ss_pred             ----eEEecccce-----eccCeEEEeccCCCCCCCCCCCccC--CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEE
Q 019876           97 ----SSVSLSELR-----QLYHVVVLAYGAESDRALGIPGEDL--IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL  165 (334)
Q Consensus        97 ----~~v~~~~~~-----~~yd~lIlATGs~~p~~~~ipG~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVI  165 (334)
                          ..+.+.+..     +.||+||+|||+ .|..+++||.+.  ..+++..+.........       .  ..++++||
T Consensus        82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~-~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~-------~--~~~~~vVi  151 (409)
T 3h8l_A           82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGA-HLATELVKGWDKYGYSVCEPEFATKLREKLE-------S--FQGGNIAI  151 (409)
T ss_dssp             ETTTTEEEEECTTSCEEEEECSEEEECCCC-EECGGGSBTHHHHCEESSSTTHHHHHHHHHH-------H--CCSEEEEE
T ss_pred             eCCCCEEEEccCCcccceeeCCEEEECCCC-CcCccCCCChhhcCcCcCCHHHHHHHHHHHH-------H--hcCCeEEE
Confidence                134443333     689999999999 588888998753  12222211111100000       0  12567799


Q ss_pred             cCCH-------------------------HHHHHHHHHccCCcccccccccHHHHHHHhcCCc---ceEEEEeecCcccc
Q 019876          166 GQGN-------------------------VALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGPVQA  217 (334)
Q Consensus       166 G~G~-------------------------~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~Vtiv~r~~~~~~  217 (334)
                      |+|.                         +++|+|..++.                .+++.|.   .+|+++++.+ ++.
T Consensus       152 G~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~----------------~l~~~g~~~~~~v~~~~~~~-~l~  214 (409)
T 3h8l_A          152 GSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHG----------------YFKKKGMLDKVHVTVFSPGE-YLS  214 (409)
T ss_dssp             EECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHH----------------HHHTTTCTTTEEEEEECSSS-SST
T ss_pred             EecccccCCCccccccccccCCCCcccCCHHHHHHHHHHH----------------HHHHcCCCCCeEEEEEeCCc-ccc
Confidence            9992                         57888865542                2333553   3699999988 555


Q ss_pred             CCCH---HHHHHHHcCCceEEEEccCc
Q 019876          218 ACTA---KELREILGIKNLYVHIREDD  241 (334)
Q Consensus       218 ~~~~---~~~~~~l~~~gv~~~~~~~~  241 (334)
                      .++.   +.+.+.++..||+++.+...
T Consensus       215 ~~~~~~~~~~~~~l~~~gV~~~~~~~v  241 (409)
T 3h8l_A          215 DLSPNSRKAVASIYNQLGIKLVHNFKI  241 (409)
T ss_dssp             TBCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred             ccCHHHHHHHHHHHHHCCCEEEcCCce
Confidence            5554   55677788889999986543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.66  E-value=6.8e-18  Score=160.14  Aligned_cols=109  Identities=20%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc-cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-   96 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~-~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-   96 (334)
                      .+||||||||+||++||.+|++.+++.+|+|||+++..+.+.. +.+..+....+++...+.. +...+++++.+..+. 
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~-~~~~gv~~i~~~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDG-LRAHGIQVVHDSALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHH-HHHTTCEEECSCEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHH-HHHCCCEEEEeEEEEE
Confidence            5799999999999999999999887899999999875322111 0010111112222222222 334689998886653 


Q ss_pred             ----eEEecccc-eeccCeEEEeccCCCCCCCCCCCcc
Q 019876           97 ----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED  129 (334)
Q Consensus        97 ----~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~  129 (334)
                          +.+.+.++ ++.||+||||||+ .+..+++||.+
T Consensus        81 d~~~~~v~~~~g~~i~yd~LviAtG~-~~~~~~i~G~~  117 (401)
T 3vrd_B           81 DPDKKLVKTAGGAEFAYDRCVVAPGI-DLLYDKIEGYS  117 (401)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCE-EECGGGSBTCC
T ss_pred             EccCcEEEecccceeecceeeeccCC-ccccCCccCch
Confidence                23455544 4699999999999 58888899865

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.65  E-value=9.8e-18  Score=160.85  Aligned_cols=203  Identities=13%  Similarity=0.115  Sum_probs=117.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--   96 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--   96 (334)
                      ++|||||||+||++||.+|++.+++.+|+|||+++...-. ..+.+..+....+++...+.+++++.+++|+.+....  
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id   82 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID   82 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence            5899999999999999999998888999999998753111 0001111122223333344566777899999886543  


Q ss_pred             ---eEEecccc-eeccCeEEEeccCCCCCCCCCCCcc--CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHH
Q 019876           97 ---SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNV  170 (334)
Q Consensus        97 ---~~v~~~~~-~~~yd~lIlATGs~~p~~~~ipG~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~  170 (334)
                         +.|.++++ +++||+||||||+. + .+++||.+  ...+.+..+.....+...       ++..++.++|+|++ .
T Consensus        83 ~~~~~V~~~~g~~i~YD~LViAtG~~-~-~~~i~G~~e~~~~~~~~~~a~~~~~~l~-------~~~~~~~~vv~gg~-~  152 (430)
T 3hyw_A           83 PDANTVTTQSGKKIEYDYLVIATGPK-L-VFGAEGQEENSTSICTAEHALETQKKLQ-------ELYANPGPVVIGAI-P  152 (430)
T ss_dssp             TTTTEEEETTCCEEECSEEEECCCCE-E-ECCSBTHHHHSCCCSSHHHHHHHHHHHH-------HHHHSCCCEEEEEC-T
T ss_pred             CCCCEEEECCCCEEECCEEEEeCCCC-c-cCCccCcccCcCCcccHHHHHHHHHHHH-------hhccCCceEEEeCC-C
Confidence               35666665 46999999999994 4 35788864  223333322221111000       01134456666655 3


Q ss_pred             HHHHHHHHccCCcccccccccHHHHHHHhcCCc---ceEEEEeecCcccc---CC---CHHHHHHHHcCCceEEEEccCc
Q 019876          171 ALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGPVQA---AC---TAKELREILGIKNLYVHIREDD  241 (334)
Q Consensus       171 g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~Vtiv~r~~~~~~---~~---~~~~~~~~l~~~gv~~~~~~~~  241 (334)
                      |++++..+.+         +.......+++.+.   -+|+++...+.+..   ..   ..+.+.+.++..||+++++...
T Consensus       153 gve~~~~~~e---------~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v  223 (430)
T 3hyw_A          153 GVSCFGPAYE---------FALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAV  223 (430)
T ss_dssp             TCCCCHHHHH---------HHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEE
T ss_pred             cEEEhHHHHH---------HHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceE
Confidence            4443322221         11112223333332   14788876654321   11   1256778889999999987654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.57  E-value=4.5e-14  Score=137.93  Aligned_cols=171  Identities=15%  Similarity=0.125  Sum_probs=112.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcC------------CCCeEEEEcCCCCCc---ccccccc------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPF---GLVRSGV------------------   64 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~------------~~~~v~vie~~~~~g---g~~~~~~------------------   64 (334)
                      ..++|||||+||+||++|..|.+.+            .......+|+.+..+   |++..+.                  
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s  117 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRS  117 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTC
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCC
Confidence            3468999999999999999997653            134677888876422   1110000                  


Q ss_pred             --------------------CCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce----------------EEecccc----
Q 019876           65 --------------------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS----------------SVSLSEL----  104 (334)
Q Consensus        65 --------------------~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~----------------~v~~~~~----  104 (334)
                                          ...++...++.+|+.++.++++..+++++.|..                .|+..+.    
T Consensus       118 ~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~  197 (501)
T 4b63_A          118 SFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGE  197 (501)
T ss_dssp             TTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCC
T ss_pred             ccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCce
Confidence                                011233457888888888887777777766521                1222221    


Q ss_pred             --eeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCC
Q 019876          105 --RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPT  182 (334)
Q Consensus       105 --~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~  182 (334)
                        ...++.||+|||. .|..|+.++.. ..+++..++........      ..-..+|+|+|||+|.+|+|++..|++  
T Consensus       198 ~~~~~ar~vVlatG~-~P~iP~~~~~~-g~v~Hss~y~~~~~~~~------~~~~~gKrV~VVG~G~SA~ei~~~L~~--  267 (501)
T 4b63_A          198 ISARRTRKVVIAIGG-TAKMPSGLPQD-PRIIHSSKYCTTLPALL------KDKSKPYNIAVLGSGQSAAEIFHDLQK--  267 (501)
T ss_dssp             EEEEEEEEEEECCCC-EECCCTTSCCC-TTEEEGGGHHHHHHHHS------CCTTSCCEEEEECCSHHHHHHHHHHHH--
T ss_pred             EEEEEeCEEEECcCC-CCCCCCCCCCC-cceeeccccccchhhcc------ccccCCcEEEEECCcHHHHHHHHHHHh--
Confidence              2468999999997 57776655432 34666666654432111      112378999999999999999999975  


Q ss_pred             cccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          183 EELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                                       .....+|+++.|+..+
T Consensus       268 -----------------~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          268 -----------------RYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             -----------------HSTTCEEEEECSSSSC
T ss_pred             -----------------cCCCceEEEEeCCCcc
Confidence                             2344579999999654

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.29  E-value=8.5e-14  Score=128.41  Aligned_cols=139  Identities=17%  Similarity=0.120  Sum_probs=89.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc-cCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~-~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..+|+||||||||++||.+|++...+++|+|||+.+.+||.+.++ +.+......   .....++++.++++..+..   
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~---~~~~~~~~e~Gv~~~~~~~---  138 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMR---KPAHLFLQELEIPYEDEGD---  138 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEE---TTTHHHHHHTTCCCEECSS---
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHH---HHHHHHHHHcCCEEEECCc---
Confidence            468999999999999999997643359999999999999987763 222222111   1223345566777654321   


Q ss_pred             EEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHH
Q 019876           98 SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI  177 (334)
Q Consensus        98 ~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~  177 (334)
                            .....+.++++++. .++.++++|.+........++..  +   +     .....+++++|||+|+++++.|..
T Consensus       139 ------~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~--~---~-----~~~~~~~~v~viggg~~av~~a~~  201 (326)
T 3fpz_A          139 ------YVVVKHAALFISTV-LSKVLQLPNVKLFNATCVEDLVT--R---P-----PTEKGEVTVAGVVTNWTLVTQAHG  201 (326)
T ss_dssp             ------EEEESCHHHHHHHH-HHHHHTSTTEEEETTEEEEEEEE--E---S-----SCSSSSCEEEEEEEEEHHHHTCTT
T ss_pred             ------ceecceeEEEEcch-hhhccccccceeecccccceeec--c---C-----CcccCCCEEEEEccCceeeehhhh
Confidence                  11233445556665 46677888876333322222211  1   1     123478999999999999999988


Q ss_pred             Hcc
Q 019876          178 LLR  180 (334)
Q Consensus       178 L~~  180 (334)
                      +..
T Consensus       202 ~~~  204 (326)
T 3fpz_A          202 TQC  204 (326)
T ss_dssp             SSS
T ss_pred             hhh
Confidence            875

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.12  E-value=2.3e-10  Score=108.49  Aligned_cols=98  Identities=12%  Similarity=0.174  Sum_probs=67.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc--------cccc---ccCC--------CCc----------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG--------LVRS---GVAP--------DHP----------   69 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg--------~~~~---~~~p--------~~~----------   69 (334)
                      .++|+|||||++|++||..|++.+  .+|+|+|+.+.+|+        .+.+   ++.|        .+.          
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G--~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW   81 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCC--CCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence            368999999999999999999997  89999999876632        2211   1110        000          


Q ss_pred             -------------------------chhHHHHHHHHHhhcCCcEEEeCeEEce------------EEecccceeccCeEE
Q 019876           70 -------------------------ETKIVINQFSRVVQHERCSFFGNVTLGS------------SVSLSELRQLYHVVV  112 (334)
Q Consensus        70 -------------------------~~~~~~~~~~~~~~~~~i~~~~~~~v~~------------~v~~~~~~~~yd~lI  112 (334)
                                               ...++...+.+.+++.|++++.++.+..            .+...++.+.+|+||
T Consensus        82 ~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g~i~ad~VV  161 (401)
T 2gqf_A           82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLI  161 (401)
T ss_dssp             HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEE
T ss_pred             HHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCCEEECCEEE
Confidence                                     1234556666777778899988765421            122333456899999


Q ss_pred             EeccCC
Q 019876          113 LAYGAE  118 (334)
Q Consensus       113 lATGs~  118 (334)
                      +|||+.
T Consensus       162 lAtG~~  167 (401)
T 2gqf_A          162 VATGGL  167 (401)
T ss_dssp             ECCCCS
T ss_pred             ECCCCc
Confidence            999985

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.00  E-value=8.3e-10  Score=105.20  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=69.0

Q ss_pred             ccccccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc--------cc---cc--------CCCC-
Q 019876            9 SRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--------RS---GV--------APDH-   68 (334)
Q Consensus         9 ~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~--------~~---~~--------~p~~-   68 (334)
                      ++.+..+.+..++|+|||||++|++||..|++.+  .+|+|+|+.+.+|+.+        ..   ..        .+.+ 
T Consensus        17 n~~~~~M~~~~~dViIIGgG~AGl~aA~~La~~G--~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~   94 (417)
T 3v76_A           17 NLYFQSMVAEKQDVVIIGAGAAGMMCAIEAGKRG--RRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFC   94 (417)
T ss_dssp             -----------CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTT
T ss_pred             ccccccccCCCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHH
Confidence            3444445555689999999999999999999997  9999999998764322        10   00        0111 


Q ss_pred             ----------------------------------cchhHHHHHHHHHhhcCCcEEEeCeEEce--------EEeccccee
Q 019876           69 ----------------------------------PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSELRQ  106 (334)
Q Consensus        69 ----------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~~~~~  106 (334)
                                                        ....++...+.+.+++.|++++.++.|..        .+...++.+
T Consensus        95 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i  174 (417)
T 3v76_A           95 KSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTV  174 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTEEE
T ss_pred             HHHHHhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCcEE
Confidence                                              01124555666677777999998865521        234444567


Q ss_pred             ccCeEEEeccCCC
Q 019876          107 LYHVVVLAYGAES  119 (334)
Q Consensus       107 ~yd~lIlATGs~~  119 (334)
                      .+|+||+|||..+
T Consensus       175 ~ad~VIlAtG~~S  187 (417)
T 3v76_A          175 DAASLVVASGGKS  187 (417)
T ss_dssp             EESEEEECCCCSS
T ss_pred             EeeEEEECCCCcc
Confidence            8999999999853

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.00  E-value=2.1e-09  Score=89.89  Aligned_cols=97  Identities=18%  Similarity=0.162  Sum_probs=69.9

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCC---cchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDH---PETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~---~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ++|+|||||++|+.+|..|.+.+  .+|+|+|+.+..... ......|++   ....++...+.+.+++.+++++.+ .+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v   78 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAG--LKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VV   78 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EE
Confidence            58999999999999999999997  999999997632111 000011222   234677888888888899999888 44


Q ss_pred             ce--------EEecccceeccCeEEEeccCCCC
Q 019876           96 GS--------SVSLSELRQLYHVVVLAYGAESD  120 (334)
Q Consensus        96 ~~--------~v~~~~~~~~yd~lIlATGs~~p  120 (334)
                      ..        .+.++++.+.+|.||+|+|.. |
T Consensus        79 ~~i~~~~~~~~v~~~~g~i~ad~vI~A~G~~-~  110 (180)
T 2ywl_A           79 KGVRDMGGVFEVETEEGVEKAERLLLCTHKD-P  110 (180)
T ss_dssp             CEEEECSSSEEEECSSCEEEEEEEEECCTTC-C
T ss_pred             EEEEEcCCEEEEEECCCEEEECEEEECCCCC-C
Confidence            21        244445567899999999994 5

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.79  E-value=2.2e-08  Score=97.47  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=70.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCC----------------CC-------cchhH
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP----------------DH-------PETKI   73 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p----------------~~-------~~~~~   73 (334)
                      ...++|+|||||++|+++|..|++.|  .+|+|||+.+.+|+.....+.|                .+       ....+
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G--~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  167 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLG--ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQ  167 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHH
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCC--CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHH
Confidence            45689999999999999999999997  9999999987765432111111                00       11135


Q ss_pred             HHHHHHHHhhcCCcEEEeCeEEce-----------EEec--c-cc---eeccCeEEEeccCC
Q 019876           74 VINQFSRVVQHERCSFFGNVTLGS-----------SVSL--S-EL---RQLYHVVVLAYGAE  118 (334)
Q Consensus        74 ~~~~~~~~~~~~~i~~~~~~~v~~-----------~v~~--~-~~---~~~yd~lIlATGs~  118 (334)
                      +...+.+.+++.|++++.++.+..           .+.+  . ++   .+.+|+||+|+|..
T Consensus       168 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~  229 (497)
T 2bry_A          168 LQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK  229 (497)
T ss_dssp             HHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence            556667777778999988876521           2333  2 33   35899999999995

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.76  E-value=7.5e-08  Score=84.07  Aligned_cols=98  Identities=18%  Similarity=0.099  Sum_probs=64.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCC---c-----------chhHHHHHHHHHhhc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH---P-----------ETKIVINQFSRVVQH   84 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~---~-----------~~~~~~~~~~~~~~~   84 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|+|+.....|.+.....+.+   .           ....+...+.+.+++
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g--~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~   80 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKG--VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG   80 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHc
Confidence            479999999999999999999997  999999997433232211000000   0           122455666777777


Q ss_pred             C-CcEEEeCeEEce--------EEecccc-eeccCeEEEeccCC
Q 019876           85 E-RCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE  118 (334)
Q Consensus        85 ~-~i~~~~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~  118 (334)
                      . +++++.......        .+.+.++ .+.+|.||+|||.+
T Consensus        81 ~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~  124 (232)
T 2cul_A           81 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  124 (232)
T ss_dssp             CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             CCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence            6 898875432211        1333344 46899999999995

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.75  E-value=5.5e-09  Score=101.11  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +|+|||+|+||++||..|++.+  .+|+|+|+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G--~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAG--KKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCEEEEeCC
Confidence            6899999999999999999987  999999998

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.74  E-value=8.2e-08  Score=86.48  Aligned_cols=38  Identities=39%  Similarity=0.523  Sum_probs=34.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~~gg   58 (334)
                      .++|+|||||++|+++|..|++. +  .+|+|+|+.+.+++
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G--~~V~viEk~~~~gg   77 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVSPGG   77 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSSCCT
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCC--CeEEEEECCCCCCC
Confidence            46999999999999999999996 6  99999999887654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.73  E-value=3.5e-08  Score=98.16  Aligned_cols=130  Identities=16%  Similarity=0.140  Sum_probs=76.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC-CCccc-cc--c-cc-----------CCC--------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP-TPFGL-VR--S-GV-----------APD--------------   67 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~-~~gg~-~~--~-~~-----------~p~--------------   67 (334)
                      ..++|+|||||+||++||..|++.|  .+|+|+|+.+ .+|.. +.  . ++           ..+              
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G--~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~  104 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMG--QQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFR  104 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCC--CCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchh
Confidence            3579999999999999999999997  9999999874 22210 00  0 00           000              


Q ss_pred             ---------C------cchhHHHHHHHHHhhc-CCcEEEeCeEEce--------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           68 ---------H------PETKIVINQFSRVVQH-ERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        68 ---------~------~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                               .      .....+...+.+.+++ .|++++.......        .|.+.++ .+.+|.||+|||++ +..
T Consensus       105 ~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~-s~~  183 (651)
T 3ces_A          105 ILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTF-LDG  183 (651)
T ss_dssp             EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTT-TCC
T ss_pred             hhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCC-ccC
Confidence                     0      0112345556666666 6888854433211        1223233 36799999999995 555


Q ss_pred             CCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       123 ~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +.++|.+.        +                  .+.+   +| |.+++++|..|.+
T Consensus       184 ~~i~G~~~--------~------------------~~gr---iG-g~~a~eLA~~L~~  211 (651)
T 3ces_A          184 KIHIGLDN--------Y------------------SGGR---AG-DPPSIPLSRRLRE  211 (651)
T ss_dssp             EEECC-------------------------------------------CCHHHHHHHT
T ss_pred             ccccCccc--------C------------------CCCC---cc-chhhhHHHHHHHh
Confidence            56666531        0                  1122   56 8899999999986

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.66  E-value=8e-08  Score=89.91  Aligned_cols=100  Identities=15%  Similarity=0.068  Sum_probs=68.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc---c-----------cccc-------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---V-----------RSGV-------------------   64 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~---~-----------~~~~-------------------   64 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|||+.+.+++.   .           ..++                   
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G--~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   87 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNG--WDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH   87 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC
Confidence            3579999999999999999999997  999999998665321   0           0000                   


Q ss_pred             ------CC--CC----cchhHHHHHHHHHhhcCCcEEEeCeEEce-----EEecccc-eeccCeEEEeccCCC
Q 019876           65 ------AP--DH----PETKIVINQFSRVVQHERCSFFGNVTLGS-----SVSLSEL-RQLYHVVVLAYGAES  119 (334)
Q Consensus        65 ------~p--~~----~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-----~v~~~~~-~~~yd~lIlATGs~~  119 (334)
                            .+  +.    .....+...+.+.+.+.|++++.++.+..     .+.+.++ .+.+|.||.|+|.++
T Consensus        88 g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A           88 NKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             TEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTTC
T ss_pred             CceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCccH
Confidence                  00  00    01134556666777777999998876532     3444444 368999999999853

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.61  E-value=9.8e-08  Score=91.58  Aligned_cols=38  Identities=26%  Similarity=0.327  Sum_probs=34.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|+|+.+.+|
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G--~~V~llEk~~~~g   62 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLG   62 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCC--CCEEEEECCCCCC
Confidence            4579999999999999999999987  9999999987654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.57  E-value=4.7e-08  Score=85.02  Aligned_cols=40  Identities=25%  Similarity=0.401  Sum_probs=37.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      .+|+||||||||++||..|++.|  ++|+|||+.+.+||.+.
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~~~GG~~~   42 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSRGSGGRMS   42 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCccc
Confidence            58999999999999999999997  99999999999988653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.55  E-value=2.8e-07  Score=91.12  Aligned_cols=39  Identities=38%  Similarity=0.523  Sum_probs=35.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..++|+|||||+||++||..|++.|  .+|+|+|+.+.+||
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G--~~V~vlEk~~~~gg  163 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGG  163 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence            3579999999999999999999997  99999999887654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.54  E-value=2.6e-07  Score=90.68  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|+|||||++|++||..|++.|  ++|+|+|+.+.
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G--~kV~VlEr~~~  141 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKE  141 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTT--CCCEEECSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CeEEEEEccCc
Confidence            479999999999999999999987  99999999854

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.50  E-value=9.4e-07  Score=81.48  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=34.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      .++|+|||||++|+++|..|++..++.+|+|+|+.+.+||
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GG  118 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG  118 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCC
Confidence            4799999999999999999999733499999999877653

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.50  E-value=3.2e-07  Score=86.69  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=31.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|+|||||++|+++|..|++.|  .+|+|+|+.+
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G--~~V~v~E~~~   38 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSG--FKVKIVEKQK   38 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            469999999999999999999987  9999999985

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.47  E-value=3.8e-07  Score=84.88  Aligned_cols=36  Identities=31%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      .++|+||||||||+++|..|++.|  ++|+|||+.+.+
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G--~~V~v~Er~~~~   39 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence            478999999999999999999997  999999997654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.46  E-value=4.3e-07  Score=84.65  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=33.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|+|+....
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~G--~~V~llE~~~~~   52 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGTMG   52 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCC
Confidence            4579999999999999999999987  999999997543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.46  E-value=5e-07  Score=83.17  Aligned_cols=39  Identities=21%  Similarity=0.258  Sum_probs=34.8

Q ss_pred             CeEEEECCchHHHHHHHHHhh---cCCCCeEEEEcCCCCCcccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~---~~~~~~v~vie~~~~~gg~~   60 (334)
                      ++|+|||||++|+++|..|++   .+  .+|+|||+.+.+||.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G--~~V~v~Ek~~~~gg~~   43 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGP--LYLAVWDKADDSGGRM   43 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CC--EEEEEECSSSSSCGGG
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCC--ceEEEEECCCCCccce
Confidence            589999999999999999999   65  9999999998777643

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.42  E-value=1e-06  Score=84.38  Aligned_cols=94  Identities=23%  Similarity=0.218  Sum_probs=70.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|++|+.+|..|++.+  .+|+++++.+.+.        +. ....++...+.+.+++.|++++.++.+..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~  216 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILDRPL--------GV-YLDKEFTDVLTEEMEANNITIATGETVER  216 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TCCHHHHHHHHHHHHTTTEEEEESCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCcccc--------cc-cCCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence            4689999999999999999999987  8999999987542        11 01245667778888889999998865421


Q ss_pred             --------EEecccceeccCeEEEeccCCCCCCC
Q 019876           98 --------SVSLSELRQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 --------~v~~~~~~~~yd~lIlATGs~~p~~~  123 (334)
                              .+..++..+++|.||+|+|. .|...
T Consensus       217 i~~~~~v~~v~~~~~~i~~d~vi~a~G~-~p~~~  249 (447)
T 1nhp_A          217 YEGDGRVQKVVTDKNAYDADLVVVAVGV-RPNTA  249 (447)
T ss_dssp             EECSSBCCEEEESSCEEECSEEEECSCE-EESCG
T ss_pred             EEccCcEEEEEECCCEEECCEEEECcCC-CCChH
Confidence                    13333345689999999998 46543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.40  E-value=8.8e-07  Score=82.72  Aligned_cols=90  Identities=19%  Similarity=0.132  Sum_probs=70.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--   96 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--   96 (334)
                      .++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |   ...++...+.+.+++.||++++++.+.  
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~---~~~~~~~~l~~~l~~~gV~i~~~~~v~~i  209 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGAMFL--------G---LDEELSNMIKDMLEETGVKFFLNSELLEA  209 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSSCCT--------T---CCHHHHHHHHHHHHHTTEEEECSCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCCeec--------c---CCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence            379999999999999999999997  8999999987542        2   234666777888888999999886653  


Q ss_pred             --eEEecccceeccCeEEEeccCCCCCC
Q 019876           97 --SSVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 --~~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                        ..+.+.+++.++|.||+|+|. .|..
T Consensus       210 ~~~~v~~~~g~i~~D~vi~a~G~-~p~~  236 (367)
T 1xhc_A          210 NEEGVLTNSGFIEGKVKICAIGI-VPNV  236 (367)
T ss_dssp             CSSEEEETTEEEECSCEEEECCE-EECC
T ss_pred             EeeEEEECCCEEEcCEEEECcCC-CcCH
Confidence              234444445789999999998 4654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.40  E-value=9.7e-07  Score=82.95  Aligned_cols=99  Identities=16%  Similarity=0.093  Sum_probs=66.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc----cc-c---------cccc--------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----GL-V---------RSGV--------------------   64 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g----g~-~---------~~~~--------------------   64 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|||+.+.+.    +. +         ..++                    
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   83 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQG--HRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD   83 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence            469999999999999999999997  9999999976531    00 0         0000                    


Q ss_pred             ------CCC----------CcchhHHHHHHHHHhhcC-CcEEEeCeEEc--------e--EEecccc-eeccCeEEEecc
Q 019876           65 ------APD----------HPETKIVINQFSRVVQHE-RCSFFGNVTLG--------S--SVSLSEL-RQLYHVVVLAYG  116 (334)
Q Consensus        65 ------~p~----------~~~~~~~~~~~~~~~~~~-~i~~~~~~~v~--------~--~v~~~~~-~~~yd~lIlATG  116 (334)
                            .+.          ......+...+.+.+.+. |++++.++.+.        .  .+.+.++ .+.+|.||.|+|
T Consensus        84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG  163 (399)
T 2x3n_A           84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADG  163 (399)
T ss_dssp             TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCC
T ss_pred             CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCC
Confidence                  000          011235566667777776 89998886542        1  3444444 468999999999


Q ss_pred             CCC
Q 019876          117 AES  119 (334)
Q Consensus       117 s~~  119 (334)
                      .++
T Consensus       164 ~~s  166 (399)
T 2x3n_A          164 IAS  166 (399)
T ss_dssp             TTC
T ss_pred             CCh
Confidence            854

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.39  E-value=1.7e-06  Score=84.81  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=32.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...+|+|||||++|+++|..|++.|  .+|+|||+.+.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G--~~v~viEr~~~   39 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQG--VRVLVVERRPG   39 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence            4579999999999999999999997  99999999854

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.39  E-value=1e-06  Score=81.30  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|+|+.+.
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G--~~V~vlE~~~~   38 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAEG   38 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence            469999999999999999999987  99999999853

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.36  E-value=1.3e-06  Score=82.28  Aligned_cols=38  Identities=16%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      .+.++|+|||||++|+++|..|++.|  .+|+|||+.+.+
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~E~~~~~   58 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSG--IDCDVYEAVKEI   58 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCC
Confidence            35689999999999999999999997  999999998653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.36  E-value=1.2e-06  Score=86.45  Aligned_cols=39  Identities=38%  Similarity=0.534  Sum_probs=35.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ...+|+|||+|++|+++|..|++.|  .+|+|||+.+.++|
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G--~~V~vlEk~~~~gg  158 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGG  158 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence            4569999999999999999999997  99999999887654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.35  E-value=1.3e-06  Score=85.17  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=31.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|+|||||++|+++|..|++.+  ++|+|||+.+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G--~~V~liE~~~   40 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRG--HRVLLLEREA   40 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCC--CCEEEEccCC
Confidence            469999999999999999999987  9999999986

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.35  E-value=1e-06  Score=81.68  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=32.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||||++|+++|.+|++.+  .+|+|+|+.+.+
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G--~~V~vle~~~~~   37 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAG--LNVLMTDAHMPP   37 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTT--CCEEEECSSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence            358999999999999999999997  999999997644

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.34  E-value=2.3e-06  Score=86.35  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..++|+|||||++|+++|..|++.|  .+|+|+|+.+.+
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~  307 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRG--WQVTLYCADEAP  307 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCcc
Confidence            3479999999999999999999997  999999996544

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.34  E-value=3.1e-06  Score=77.56  Aligned_cols=39  Identities=31%  Similarity=0.415  Sum_probs=34.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      .+|+|||+|++|+++|..|++.+++.+|+|+|+.+.+||
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~gg  104 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG  104 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccc
Confidence            389999999999999999999844499999999888764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.33  E-value=1.7e-06  Score=85.85  Aligned_cols=36  Identities=28%  Similarity=0.396  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|+|+.+.
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G--~~V~LiEr~~~   57 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLG--HDVTIYERSAF   57 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCC--CCEEEEcCCCC
Confidence            3479999999999999999999997  99999999854

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.33  E-value=9.8e-07  Score=82.60  Aligned_cols=99  Identities=19%  Similarity=0.161  Sum_probs=65.9

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC---cccccc-----------ccC-C------------------
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRS-----------GVA-P------------------   66 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~---gg~~~~-----------~~~-p------------------   66 (334)
                      ++|+|||||++|+++|..|++..|+.+|+|+|+.+.+   |..+..           ++. .                  
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            5899999999999999999998444999999998654   211000           000 0                  


Q ss_pred             --------CC----cchhHHHHHHHHHhhcCCcEEEeCeEEceEEecccceeccCeEEEeccCCCC
Q 019876           67 --------DH----PETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD  120 (334)
Q Consensus        67 --------~~----~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v~~~~~~~~yd~lIlATGs~~p  120 (334)
                              +.    ....++...+.+.+.+.|++++.++.+.. +.. .....+|.||.|+|.++.
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~-i~~-~~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLE-HGE-LPLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCS-GGG-CCGGGCSEEEECCGGGGG
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEecc-chh-cccccCCEEEECCCCCch
Confidence                    00    11235666667777777899988877632 111 112579999999998544

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.32  E-value=1.5e-06  Score=86.23  Aligned_cols=108  Identities=17%  Similarity=0.131  Sum_probs=67.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC-CCcccc-c-----------------c-c----------c---
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP-TPFGLV-R-----------------S-G----------V---   64 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~-~~gg~~-~-----------------~-~----------~---   64 (334)
                      ..++|+|||||+||++||..+++.|  .+|+|+|+.+ .+|... .                 . +          +   
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G--~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~  103 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMG--AKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFK  103 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC--CCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhccccee
Confidence            3579999999999999999999997  9999999874 222100 0                 0 0          0   


Q ss_pred             ------CCCC------cchhHHHHHHHHHhhc-CCcEEEeCeEEce--------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           65 ------APDH------PETKIVINQFSRVVQH-ERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        65 ------~p~~------~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                            -|..      .....+...+.+.+++ .+++++.......        .|.+.++ .+.+|.||+|||.+ +..
T Consensus       104 ~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~-s~~  182 (637)
T 2zxi_A          104 MLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTF-LNG  182 (637)
T ss_dssp             EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTC-BTC
T ss_pred             ecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCC-ccC
Confidence                  0000      0112355566666766 5888864433211        1223333 46899999999995 555


Q ss_pred             CCCCCc
Q 019876          123 LGIPGE  128 (334)
Q Consensus       123 ~~ipG~  128 (334)
                      +.++|.
T Consensus       183 ~~~~G~  188 (637)
T 2zxi_A          183 VIYIGD  188 (637)
T ss_dssp             EEEETT
T ss_pred             ceeccc
Confidence            556664

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.32  E-value=2.3e-06  Score=82.22  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=69.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|++|+.+|..|++.+  .+|+|+++.+.+.        |.  ...++...+.+.+++.||+++.++.+..
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~  237 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARERIL--------PT--YDSELTAPVAESLKKLGIALHLGHSVEG  237 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEETTCEEEE
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence            4579999999999999999999997  8999999987642        21  1245666777778888999998876531


Q ss_pred             ----EEecc--cc---eeccCeEEEeccCCCCCCC
Q 019876           98 ----SVSLS--EL---RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 ----~v~~~--~~---~~~yd~lIlATGs~~p~~~  123 (334)
                          .+.+.  ++   .+++|.||+|+|. .|+..
T Consensus       238 i~~~~v~v~~~~G~~~~i~~D~vv~a~G~-~p~~~  271 (458)
T 1lvl_A          238 YENGCLLANDGKGGQLRLEADRVLVAVGR-RPRTK  271 (458)
T ss_dssp             EETTEEEEECSSSCCCEECCSCEEECCCE-EECCS
T ss_pred             EEeCCEEEEECCCceEEEECCEEEECcCC-CcCCC
Confidence                12222  33   4689999999998 46654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.31  E-value=2.2e-06  Score=80.56  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=33.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||||++|+++|..|++.|  ++|+|||+.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence            4579999999999999999999997  99999999765

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.31  E-value=1.8e-06  Score=85.28  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc-------------------ccc------------c-c-cc-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-------------------GLV------------R-S-GV-   64 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g-------------------g~~------------~-~-~~-   64 (334)
                      .++|+|||||++|+++|..|++.|  ++|+|||+.+.+.                   |++            . + +. 
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G--~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~  126 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGG--VGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIF  126 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTT--CCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcc
Confidence            468999999999999999999997  9999999875432                   110            0 1 00 


Q ss_pred             ------------CCC--CcchhHHHHHHHHHhhcCCcEEEeCeEEc--------eEEec--ccc--eeccCeEEEeccCC
Q 019876           65 ------------APD--HPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSL--SEL--RQLYHVVVLAYGAE  118 (334)
Q Consensus        65 ------------~p~--~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--------~~v~~--~~~--~~~yd~lIlATGs~  118 (334)
                                  .|.  ......+...+.+.+.+.|++++.++.+.        ..+++  .++  .+.+|+||.|+|.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~  206 (570)
T 3fmw_A          127 TQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGR  206 (570)
T ss_dssp             TTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSS
T ss_pred             cccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCC
Confidence                        000  00122455556666666789988887652        13333  344  46899999999985


Q ss_pred             C
Q 019876          119 S  119 (334)
Q Consensus       119 ~  119 (334)
                      +
T Consensus       207 S  207 (570)
T 3fmw_A          207 S  207 (570)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.31  E-value=1.8e-06  Score=84.66  Aligned_cols=95  Identities=16%  Similarity=0.165  Sum_probs=71.4

Q ss_pred             cCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        14 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      ....-+++++|||||+.|+..|..+.+.|  .+|+|+++...         .|.+  ..++...+...+++.|++++++.
T Consensus       218 ~l~~lP~~lvIIGgG~IGlE~A~~~~~lG--~~VTii~~~~~---------L~~~--D~ei~~~l~~~l~~~gi~~~~~~  284 (542)
T 4b1b_A          218 SLKKDPGKTLVVGASYVALECSGFLNSLG--YDVTVAVRSIV---------LRGF--DQQCAVKVKLYMEEQGVMFKNGI  284 (542)
T ss_dssp             TCSSCCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEESSCS---------STTS--CHHHHHHHHHHHHHTTCEEEETC
T ss_pred             ccccCCceEEEECCCHHHHHHHHHHHhcC--CeEEEeccccc---------cccc--chhHHHHHHHHHHhhcceeecce
Confidence            33445789999999999999999999998  99999987532         1433  35677788888999999999887


Q ss_pred             EEce--------EEeccc-ceeccCeEEEeccCCCCCC
Q 019876           94 TLGS--------SVSLSE-LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        94 ~v~~--------~v~~~~-~~~~yd~lIlATGs~~p~~  122 (334)
                      .+..        .+...+ ....+|.|++|+|- .|+.
T Consensus       285 ~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR-~Pnt  321 (542)
T 4b1b_A          285 LPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR-KGDI  321 (542)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEESEEEECSCE-EESC
T ss_pred             EEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc-cCCc
Confidence            6532        222322 23579999999998 4664

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.31  E-value=2.8e-06  Score=80.41  Aligned_cols=93  Identities=17%  Similarity=0.217  Sum_probs=70.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |. ....++...+.+.+++.||+++.++.+..
T Consensus       144 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~  212 (408)
T 2gqw_A          144 PQSRLLIVGGGVIGLELAATARTAG--VHVSLVETQPRLM--------SR-AAPATLADFVARYHAAQGVDLRFERSVTG  212 (408)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT-TSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEEeCCccc--------cc-ccCHHHHHHHHHHHHHcCcEEEeCCEEEE
Confidence            4689999999999999999999997  8999999987542        21 01245666777788889999998866532


Q ss_pred             ----EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 ----SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ----~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                          .+.+.++ .+++|.||+|+|. .|..
T Consensus       213 i~~~~v~~~~g~~i~~D~vi~a~G~-~p~~  241 (408)
T 2gqw_A          213 SVDGVVLLDDGTRIAADMVVVGIGV-LAND  241 (408)
T ss_dssp             EETTEEEETTSCEEECSEEEECSCE-EECC
T ss_pred             EECCEEEECCCCEEEcCEEEECcCC-CccH
Confidence                3444444 4689999999998 4653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.31  E-value=2.7e-06  Score=79.17  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|+|+...
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G--~~V~lle~~~~   39 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRG--EEVTVIEKRFI   39 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSST
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence            579999999999999999999987  89999999743

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.30  E-value=3e-06  Score=81.54  Aligned_cols=93  Identities=20%  Similarity=0.280  Sum_probs=70.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|++|+.+|..|++.+  .+|+|+++.+.+.        |.  ...++...+.+.+++.||+++.++.+..
T Consensus       168 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~  235 (464)
T 2eq6_A          168 LPKRLLVIGGGAVGLELGQVYRRLG--AEVTLIEYMPEIL--------PQ--GDPETAALLRRALEKEGIRVRTKTKAVG  235 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHhcCCEEEcCCEEEE
Confidence            3579999999999999999999987  9999999987542        22  1345666777888888999998876521


Q ss_pred             --------EEecc-c--c---eeccCeEEEeccCCCCCCC
Q 019876           98 --------SVSLS-E--L---RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 --------~v~~~-~--~---~~~yd~lIlATGs~~p~~~  123 (334)
                              .+.+. +  +   .+++|.||+|+|. .|...
T Consensus       236 i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~-~p~~~  274 (464)
T 2eq6_A          236 YEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR-KPRTE  274 (464)
T ss_dssp             EEEETTEEEEEEEETTCCSCEEEEESEEEECSCE-EESCT
T ss_pred             EEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc-ccCCC
Confidence                    23332 3  3   4689999999998 46553

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.30  E-value=2.2e-06  Score=82.24  Aligned_cols=93  Identities=20%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|++|+.+|..|++.+  .+|+++++.+.+.        |.  ...++...+.+.+++.|++++.++.+..
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l~~~g--~~V~lv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~V~~  233 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVWHRLG--AEVIVLEYMDRIL--------PT--MDLEVSRAAERVFKKQGLTIRTGVRVTA  233 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence            3579999999999999999999987  8999999986532        32  1245666677778888999998865521


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~~~  123 (334)
                              .+.+.++ .+++|.||+|+|. .|...
T Consensus       234 i~~~~~~v~v~~~~g~~i~~D~vv~A~G~-~p~~~  267 (455)
T 2yqu_A          234 VVPEAKGARVELEGGEVLEADRVLVAVGR-RPYTE  267 (455)
T ss_dssp             EEEETTEEEEEETTSCEEEESEEEECSCE-EECCT
T ss_pred             EEEeCCEEEEEECCCeEEEcCEEEECcCC-CcCCC
Confidence                    1222233 4689999999998 46553

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.29  E-value=3.3e-06  Score=79.08  Aligned_cols=92  Identities=21%  Similarity=0.177  Sum_probs=69.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      .++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.. ...++...+.+.+++.|++++.++.+.. 
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i  213 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGG--YQLDVVAPCEQVM--------PGL-LHPAAAKAVQAGLEGLGVRFHLGPVLASL  213 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TTT-SCHHHHHHHHHHHHTTTCEEEESCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCcchh--------hcc-cCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            689999999999999999999997  8999999876532        211 1245667777888889999998865421 


Q ss_pred             -------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 -------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                             .+.+.++ .+++|.||+|+|. .|..
T Consensus       214 ~~~~~~~~v~~~~g~~i~~d~vv~a~G~-~p~~  245 (384)
T 2v3a_A          214 KKAGEGLEAHLSDGEVIPCDLVVSAVGL-RPRT  245 (384)
T ss_dssp             EEETTEEEEEETTSCEEEESEEEECSCE-EECC
T ss_pred             EecCCEEEEEECCCCEEECCEEEECcCC-CcCH
Confidence                   2333344 3689999999998 4554

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.29  E-value=3.7e-06  Score=81.79  Aligned_cols=102  Identities=20%  Similarity=0.198  Sum_probs=67.3

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-----c---------ccccC----------------
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-----V---------RSGVA----------------   65 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-----~---------~~~~~----------------   65 (334)
                      .+..++|+||||||+|+++|..|++.|  ++|+|||+.+.++..     +         ..|+.                
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAG--VEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGG   85 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETT
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccc
Confidence            345689999999999999999999997  999999997653210     0         00110                


Q ss_pred             --------C-CCc-----chhHHHHHHHHHhhcCCcEEEeCeEEce--------EEecccc----eeccCeEEEeccCCC
Q 019876           66 --------P-DHP-----ETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL----RQLYHVVVLAYGAES  119 (334)
Q Consensus        66 --------p-~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~~~----~~~yd~lIlATGs~~  119 (334)
                              + .++     ....+...+.+.+.+.+++++.++.+..        .+++.+.    ++.+|+||.|.|.++
T Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           86 LPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             eecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence                    0 000     0123445566666677899988876531        2333333    468999999999864

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.28  E-value=2e-06  Score=80.59  Aligned_cols=34  Identities=26%  Similarity=0.486  Sum_probs=31.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++|+|||||++|+++|..|++.|  .+|+|+|+.+.
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   36 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP   36 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence            58999999999999999999997  99999998763

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.28  E-value=3.7e-06  Score=85.01  Aligned_cols=37  Identities=19%  Similarity=0.163  Sum_probs=33.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..++|+|||||.+|+++|..|++.|  .+|+|+|+.+.+
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~  299 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRG--AVVTLYCADAQP  299 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSST
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCC--CcEEEEeCCCcc
Confidence            3479999999999999999999997  999999997544

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.28  E-value=3.7e-06  Score=81.49  Aligned_cols=94  Identities=19%  Similarity=0.180  Sum_probs=70.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++|+|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |. ....++...+.+.+++.||+++++..+.
T Consensus       192 ~~~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~  260 (490)
T 2bc0_A          192 KDIKRVAVVGAGYIGVELAEAFQRKG--KEVVLIDVVDTCL--------AG-YYDRDLTDLMAKNMEEHGIQLAFGETVK  260 (490)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEEETCCEE
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCC--CeEEEEEcccchh--------hh-HHHHHHHHHHHHHHHhCCeEEEeCCEEE
Confidence            35689999999999999999999987  8999999986532        21 1134566777888888999999886553


Q ss_pred             e--------EEecccceeccCeEEEeccCCCCCC
Q 019876           97 S--------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~--------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                      .        .+..+...+++|.||+|+|. .|..
T Consensus       261 ~i~~~~~v~~v~~~g~~i~~D~Vi~a~G~-~p~~  293 (490)
T 2bc0_A          261 EVAGNGKVEKIITDKNEYDVDMVILAVGF-RPNT  293 (490)
T ss_dssp             EEECSSSCCEEEESSCEEECSEEEECCCE-EECC
T ss_pred             EEEcCCcEEEEEECCcEEECCEEEECCCC-CcCh
Confidence            1        13333334689999999998 4654

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.27  E-value=4.6e-06  Score=78.43  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=32.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||||++|+++|..|++.|  .+|+|||+.+.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNG--IDVSVYERDND   60 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTT--CEEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence            3579999999999999999999987  99999999764

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.26  E-value=2.2e-06  Score=79.45  Aligned_cols=37  Identities=30%  Similarity=0.300  Sum_probs=32.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      ..++|+|||||++|+++|.+|+ ++  .+|+|+|+.+.+|
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G--~~V~vlE~~~~~g   44 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AH--GRVVVLEREAQPG   44 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TT--SCEEEECSSSSTT
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CC--CCEEEEECCCCcc
Confidence            3579999999999999999999 46  9999999986543

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.26  E-value=5.4e-07  Score=87.25  Aligned_cols=41  Identities=22%  Similarity=0.224  Sum_probs=32.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      +++|||||||++||+||.+|++.|  .+|+|+|+++.+||...
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~~~GG~~~   41 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRDKPGGRAY   41 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC-------C
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCCCCCCcEE
Confidence            579999999999999999999997  99999999999998753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.25  E-value=1.3e-06  Score=82.23  Aligned_cols=88  Identities=13%  Similarity=0.060  Sum_probs=68.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS   98 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~   98 (334)
                      .++|+|||+|+.|+.+|..|++.+  .+|+++++.+.+.        +. ....++...+.+.+++.|++++.+..+..-
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtvv~~~~~~l--------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i  214 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSG--TPASIGIILEYPL--------ER-QLDRDGGLFLKDKLDRLGIKIYTNSNFEEM  214 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSC--------TT-TSCHHHHHHHHHHHHTTTCEEECSCCGGGC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CeEEEEEcCCccc--------hh-hcCHHHHHHHHHHHHhCCCEEEeCCEEEEc
Confidence            479999999999999999999997  9999999987642        21 112456677778888899999988766422


Q ss_pred             EecccceeccCeEEEeccCCCCCC
Q 019876           99 VSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        99 v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                          ...+++|.||+|+|. .|..
T Consensus       215 ----g~~~~~D~vv~a~G~-~p~~  233 (385)
T 3klj_A          215 ----GDLIRSSCVITAVGV-KPNL  233 (385)
T ss_dssp             ----HHHHHHSEEEECCCE-EECC
T ss_pred             ----CeEEecCeEEECcCc-ccCh
Confidence                334689999999998 4654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.24  E-value=3.6e-06  Score=80.99  Aligned_cols=92  Identities=12%  Similarity=0.182  Sum_probs=69.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-   96 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        +.+  ..++...+.+.+++.|++++.++.+. 
T Consensus       165 ~~~~vvVvGgG~~g~e~A~~l~~~G--~~Vtlv~~~~~~l--------~~~--~~~~~~~l~~~l~~~gv~i~~~~~v~~  232 (463)
T 2r9z_A          165 QPKRVAIIGAGYIGIELAGLLRSFG--SEVTVVALEDRLL--------FQF--DPLLSATLAENMHAQGIETHLEFAVAA  232 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHTTCEEESSCCEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCccc--------ccc--CHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            3579999999999999999999997  9999999886532        221  23556667777888899999886542 


Q ss_pred             -------eEEecccce--eccCeEEEeccCCCCCC
Q 019876           97 -------SSVSLSELR--QLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 -------~~v~~~~~~--~~yd~lIlATGs~~p~~  122 (334)
                             ..+.+.+++  +++|.||+|+|. .|+.
T Consensus       233 i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~-~p~~  266 (463)
T 2r9z_A          233 LERDAQGTTLVAQDGTRLEGFDSVIWAVGR-APNT  266 (463)
T ss_dssp             EEEETTEEEEEETTCCEEEEESEEEECSCE-EESC
T ss_pred             EEEeCCeEEEEEeCCcEEEEcCEEEECCCC-CcCC
Confidence                   134444554  689999999998 4654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.23  E-value=2.6e-06  Score=81.42  Aligned_cols=91  Identities=12%  Similarity=0.140  Sum_probs=70.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--   96 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--   96 (334)
                      .++++|||+|+.|+.+|..+++.+  .+|+|+++.+.+.        |.+  ..++...+.+.+++.||+++.+..+.  
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~ll--------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~~  214 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERG--LHPTLIHRSDKIN--------KLM--DADMNQPILDELDKREIPYRLNEEINAI  214 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSCCS--------TTS--CGGGGHHHHHHHHHTTCCEEESCCEEEE
T ss_pred             CcEEEEECCccchhhhHHHHHhcC--Ccceeeeeecccc--------ccc--cchhHHHHHHHhhccceEEEeccEEEEe
Confidence            579999999999999999999997  9999999887542        221  23455567777888899999987763  


Q ss_pred             --eEEecccce-eccCeEEEeccCCCCCC
Q 019876           97 --SSVSLSELR-QLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 --~~v~~~~~~-~~yd~lIlATGs~~p~~  122 (334)
                        ..+.+++++ +++|.|++|+|. .|+.
T Consensus       215 ~~~~v~~~~g~~~~~D~vl~a~G~-~Pn~  242 (437)
T 4eqs_A          215 NGNEITFKSGKVEHYDMIIEGVGT-HPNS  242 (437)
T ss_dssp             ETTEEEETTSCEEECSEEEECCCE-EESC
T ss_pred             cCCeeeecCCeEEeeeeEEEEece-ecCc
Confidence              234555544 589999999998 4654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.23  E-value=8.7e-06  Score=77.97  Aligned_cols=94  Identities=18%  Similarity=0.256  Sum_probs=71.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..+.+.+  .+|+++++.+.+.        |.. ...++...+.+.+++.|++++.++.+..
T Consensus       146 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~  214 (452)
T 3oc4_A          146 NSQTVAVIGAGPIGMEAIDFLVKMK--KTVHVFESLENLL--------PKY-FDKEMVAEVQKSLEKQAVIFHFEETVLG  214 (452)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TTT-CCHHHHHHHHHHHHTTTEEEEETCCEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCccc--------ccc-CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence            3579999999999999999999997  9999999887532        211 1346677788888899999998865521


Q ss_pred             --------EEecccceeccCeEEEeccCCCCCCC
Q 019876           98 --------SVSLSELRQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 --------~v~~~~~~~~yd~lIlATGs~~p~~~  123 (334)
                              .+..+++.+++|.||+|+|. .|...
T Consensus       215 i~~~~~~v~v~~~~g~i~aD~Vv~A~G~-~p~~~  247 (452)
T 3oc4_A          215 IEETANGIVLETSEQEISCDSGIFALNL-HPQLA  247 (452)
T ss_dssp             EEECSSCEEEEESSCEEEESEEEECSCC-BCCCS
T ss_pred             EEccCCeEEEEECCCEEEeCEEEECcCC-CCChH
Confidence                    13344456789999999998 46543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.22  E-value=4e-06  Score=80.66  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=70.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |   ...++...+.+.+++.|++++.++.+..
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~---~~~~~~~~l~~~l~~~Gv~i~~~~~v~~  241 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLG--SKVTVLARNTLFF--------R---EDPAIGEAVTAAFRAEGIEVLEHTQASQ  241 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------T---SCHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEECCccC--------C---CCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence            4689999999999999999999997  8999999876531        3   1345677778888889999998865421


Q ss_pred             --------EEecccceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+++..+++|.||+|+|. .|..
T Consensus       242 i~~~~~~~~v~~~~~~i~aD~Vv~a~G~-~p~~  273 (467)
T 1zk7_A          242 VAHMDGEFVLTTTHGELRADKLLVATGR-TPNT  273 (467)
T ss_dssp             EEEETTEEEEEETTEEEEESEEEECSCE-EESC
T ss_pred             EEEeCCEEEEEECCcEEEcCEEEECCCC-CcCC
Confidence                    13334445689999999998 4654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.22  E-value=2.6e-06  Score=80.39  Aligned_cols=37  Identities=14%  Similarity=0.150  Sum_probs=32.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|+|||||++|+++|..|++..|+.+|+|+|+...
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            4689999999999999999999933399999999754

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.22  E-value=5.3e-06  Score=80.62  Aligned_cols=100  Identities=21%  Similarity=0.244  Sum_probs=67.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc--------------cccc-------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--------------RSGV-------------------   64 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~--------------~~~~-------------------   64 (334)
                      ..++|+||||||+|+++|..|++.|  ++|+|||+.+.+....              ..|+                   
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   88 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGG--VDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRP   88 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceeccee
Confidence            5679999999999999999999997  9999999975432100              0000                   


Q ss_pred             -----CC-CCc-----chhHHHHHHHHHhhcCCcEEEeCeEEc--------eEEecccc----eeccCeEEEeccCCC
Q 019876           65 -----AP-DHP-----ETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSEL----RQLYHVVVLAYGAES  119 (334)
Q Consensus        65 -----~p-~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~v~--------~~v~~~~~----~~~yd~lIlATGs~~  119 (334)
                           .+ .++     ....+...+.+.+.+.+++++.++.+.        ..+++.+.    ++.+|+||.|.|.++
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           89 VDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             EEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             cccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence                 00 010     112455556666667789998887652        12333333    468999999999864

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.21  E-value=6.5e-06  Score=81.37  Aligned_cols=39  Identities=33%  Similarity=0.484  Sum_probs=34.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL   59 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~   59 (334)
                      .++|+|||+|++|+++|..|.+.+  .+|+|+|+.+.++|.
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g--~~v~~~e~~~~~~~~  164 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIPGGN  164 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSS--CCEEEECSSSSSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCcc
Confidence            568999999999999999999987  999999998876653

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.20  E-value=4.4e-06  Score=78.28  Aligned_cols=39  Identities=21%  Similarity=0.208  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhh-cCCCCeEEEEcCCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTP   56 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~-~~~~~~v~vie~~~~~   56 (334)
                      +..++|+|||||++|+++|.+|++ .+ ..+|+|+|+.+..
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G-~~~V~vlE~~~~~   58 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNHG-ITNVAVLEKGWLA   58 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHHC-CCCEEEECSSSTT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhcC-CCcEEEEeCCCCC
Confidence            345799999999999999999999 74 2799999998643

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.20  E-value=4.2e-06  Score=77.99  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=33.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      .++|+|||||++|+++|..|++.+  .+|+|+|+.+..+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G--~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCC
Confidence            469999999999999999999997  9999999976543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.20  E-value=2.9e-06  Score=81.35  Aligned_cols=99  Identities=19%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC--cccc-----------cccc------------------CCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP--FGLV-----------RSGV------------------APD   67 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~--gg~~-----------~~~~------------------~p~   67 (334)
                      .++|+|||||++|+++|..|++.|  .+|+|+|+.+.+  |...           ..++                  .|.
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G--~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   83 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRG--LKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPD   83 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSS--CCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCC
Confidence            369999999999999999999987  999999997643  1110           0000                  000


Q ss_pred             C------------cchhHHHHHHHHHhhcCCcEEEeCeEEce------E---Eecc---cc---eeccCeEEEeccCCC
Q 019876           68 H------------PETKIVINQFSRVVQHERCSFFGNVTLGS------S---VSLS---EL---RQLYHVVVLAYGAES  119 (334)
Q Consensus        68 ~------------~~~~~~~~~~~~~~~~~~i~~~~~~~v~~------~---v~~~---~~---~~~yd~lIlATGs~~  119 (334)
                      .            .....+...+.+.+.+.|++++.++.+..      .   +.+.   ++   .+.+|.||.|+|.++
T Consensus        84 ~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A           84 MQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             SSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             CceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence            0            01124555566666667899988876521      1   2232   33   458999999999853

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.20  E-value=3.4e-06  Score=83.82  Aligned_cols=35  Identities=26%  Similarity=0.221  Sum_probs=32.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||||+||++||..|++.|  .+|+|+|+.+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G--~kVlLIEk~~   54 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGG--LHCLLITSDL   54 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCG
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCC--CcEEEEEecc
Confidence            4579999999999999999999997  9999999874

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.20  E-value=6.4e-06  Score=78.94  Aligned_cols=92  Identities=14%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+|+++.+.+.        |.  ...++...+.+.+++.|++++.++.+..
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~  236 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAGEIL--------SG--FEKQMAAIIKKRLKKKGVEVVTNALAKG  236 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            4589999999999999999999987  8999999986542        32  1345666777788888999998876521


Q ss_pred             --------EEecc---c-ceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS---E-LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~---~-~~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.   + ..+++|.||+|+|. .|..
T Consensus       237 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~-~p~~  272 (455)
T 1ebd_A          237 AEEREDGVTVTYEANGETKTIDADYVLVTVGR-RPNT  272 (455)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEESEEEECSCE-EESC
T ss_pred             EEEeCCeEEEEEEeCCceeEEEcCEEEECcCC-Cccc
Confidence                    12222   2 23589999999998 4654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.19  E-value=7.8e-06  Score=81.03  Aligned_cols=38  Identities=24%  Similarity=0.433  Sum_probs=33.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhc----CCCCeEEEEcCCCCCc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKA----HQEAQVDIIDRLPTPF   57 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~----~~~~~v~vie~~~~~g   57 (334)
                      ++|+|||||+||+++|..|++.    +++.+|+|||+.+.++
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g   77 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   77 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCC
Confidence            6899999999999999999998    2239999999986654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.18  E-value=8.3e-06  Score=77.16  Aligned_cols=92  Identities=13%  Similarity=0.188  Sum_probs=70.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      .++++|||+|+.|+.+|..+.+.+  .+|+++++.+.+.        +. ....++...+.+.+++.|+++++++.+.. 
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i  220 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFG--VNVTLLEALPRVL--------AR-VAGEALSEFYQAEHRAHGVDLRTGAAMDCI  220 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCchh--------hh-hcCHHHHHHHHHHHHhCCCEEEECCEEEEE
Confidence            679999999999999999999997  9999999987542        11 11245667778888889999998865521 


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.++ .+++|.||+|+|. .|..
T Consensus       221 ~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~-~p~~  253 (415)
T 3lxd_A          221 EGDGTKVTGVRMQDGSVIPADIVIVGIGI-VPCV  253 (415)
T ss_dssp             EESSSBEEEEEESSSCEEECSEEEECSCC-EESC
T ss_pred             EecCCcEEEEEeCCCCEEEcCEEEECCCC-ccCh
Confidence                    2444444 3689999999998 4654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.17  E-value=9.7e-07  Score=85.52  Aligned_cols=43  Identities=30%  Similarity=0.434  Sum_probs=37.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ...+|+|||||++||+||..|++.. +.+|+|+|+++.+||.+.
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~-G~~V~VlE~~~~~GG~~~   51 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQID-GPSWMIVDSNETPGGLAS   51 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHC-CSCEEEEESSSSCCGGGC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhC-CCCEEEEECCCCCcCCee
Confidence            4579999999999999999998752 399999999999999764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.17  E-value=3.9e-06  Score=79.40  Aligned_cols=93  Identities=14%  Similarity=0.065  Sum_probs=70.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+...         ....++...+.+.+++.||+++++..+..
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtvv~~~~~~l~~---------~~~~~~~~~l~~~l~~~GV~i~~~~~v~~  210 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLG--LSVTILEAGDELLVR---------VLGRRIGAWLRGLLTELGVQVELGTGVVG  210 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSSHH---------HHCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCccchh---------hcCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            4689999999999999999999987  999999988654211         01235666777788888999998866531


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.++ .+++|.||+|+|. .|..
T Consensus       211 i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~-~p~~  243 (410)
T 3ef6_A          211 FSGEGQLEQVMASDGRSFVADSALICVGA-EPAD  243 (410)
T ss_dssp             EECSSSCCEEEETTSCEEECSEEEECSCE-EECC
T ss_pred             EeccCcEEEEEECCCCEEEcCEEEEeeCC-eecH
Confidence                    2444444 3589999999998 4654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.17  E-value=5.4e-06  Score=80.10  Aligned_cols=92  Identities=14%  Similarity=0.151  Sum_probs=69.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|++|+.+|..|++.+  .+|+++++.+.+.        +.  ...++...+.+.+++.|++++.++.+..
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~  252 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELG--KKVRMIERNDHIG--------TI--YDGDMAEYIYKEADKHHIEILTNENVKA  252 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTT--CEEEEECCGGGTT--------SS--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeCCchh--------hc--CCHHHHHHHHHHHHHcCcEEEcCCEEEE
Confidence            4689999999999999999999987  8999999876532        21  1245667777788888999998765421


Q ss_pred             --------EEecccceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                              .+..++..+++|.||+|+|. .|..
T Consensus       253 i~~~~~v~~v~~~~~~i~~D~vi~a~G~-~p~~  284 (480)
T 3cgb_A          253 FKGNERVEAVETDKGTYKADLVLVSVGV-KPNT  284 (480)
T ss_dssp             EEESSBEEEEEETTEEEECSEEEECSCE-EESC
T ss_pred             EEcCCcEEEEEECCCEEEcCEEEECcCC-CcCh
Confidence                    12333445689999999998 4554

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.16  E-value=7.7e-06  Score=78.86  Aligned_cols=92  Identities=14%  Similarity=0.173  Sum_probs=69.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |.  ...++...+.+.+++.||+++.++.+..
T Consensus       182 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~  249 (478)
T 1v59_A          182 IPKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQPQIG--------AS--MDGEVAKATQKFLKKQGLDFKLSTKVIS  249 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcC--CEEEEEEeCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            3589999999999999999999997  8999999987642        21  1245667777888889999998866521


Q ss_pred             ----------EEecc-----c-ceeccCeEEEeccCCCCCC
Q 019876           98 ----------SVSLS-----E-LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ----------~v~~~-----~-~~~~yd~lIlATGs~~p~~  122 (334)
                                .+.+.     + ..+++|.||+|+|. .|..
T Consensus       250 i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~-~p~~  289 (478)
T 1v59_A          250 AKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR-RPYI  289 (478)
T ss_dssp             EEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE-EECC
T ss_pred             EEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC-CcCC
Confidence                      12222     2 23589999999998 4654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.16  E-value=7.4e-06  Score=77.27  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~   56 (334)
                      .++|+|||||++|+++|..|++.|  .+ |+|||+.+.+
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G--~~~v~v~E~~~~~   40 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEI   40 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCCCc
Confidence            479999999999999999999997  99 9999997653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.16  E-value=6.8e-06  Score=79.39  Aligned_cols=92  Identities=14%  Similarity=0.133  Sum_probs=70.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-   96 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.  ...++...+.+.+++.||++++++.+. 
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~Gv~i~~~~~v~~  251 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLG--SETHLVIRGETVL--------RK--FDECIQNTITDHYVKEGINVHKLSKIVK  251 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEeCCccc--------cc--cCHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence            4689999999999999999999997  8999999987542        22  134566677778888899999886542 


Q ss_pred             ---------eEEecccc--eeccCeEEEeccCCCCCC
Q 019876           97 ---------SSVSLSEL--RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ---------~~v~~~~~--~~~yd~lIlATGs~~p~~  122 (334)
                               ..+.+.++  .+++|.||+|+|. .|..
T Consensus       252 i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~-~p~~  287 (479)
T 2hqm_A          252 VEKNVETDKLKIHMNDSKSIDDVDELIWTIGR-KSHL  287 (479)
T ss_dssp             EEECC-CCCEEEEETTSCEEEEESEEEECSCE-EECC
T ss_pred             EEEcCCCcEEEEEECCCcEEEEcCEEEECCCC-CCcc
Confidence                     12444454  4689999999998 4654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.15  E-value=5.9e-06  Score=79.84  Aligned_cols=92  Identities=13%  Similarity=0.216  Sum_probs=70.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+|+++.+.+.        |.  ...++...+.+.+++.||++++++.+..
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~  251 (482)
T 1ojt_A          184 VPGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMDGLM--------QG--ADRDLVKVWQKQNEYRFDNIMVNTKTVA  251 (482)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEECCccc--------cc--cCHHHHHHHHHHHHhcCCEEEECCEEEE
Confidence            3689999999999999999999997  8999999987642        32  2345667778888889999998876521


Q ss_pred             --------EEeccc----c-eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSE----L-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~----~-~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.+    + .+.+|.||+|+|. .|+.
T Consensus       252 i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~-~p~~  288 (482)
T 1ojt_A          252 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR-APNG  288 (482)
T ss_dssp             EEEETTEEEEEEESSSCCSSCEEESCEEECCCE-EECG
T ss_pred             EEEcCCeEEEEEeccCCCceEEEcCEEEECcCC-CcCC
Confidence                    233333    3 3579999999998 4654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.14  E-value=9e-06  Score=76.65  Aligned_cols=93  Identities=19%  Similarity=0.199  Sum_probs=70.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..+.+.+  .+|+++++.+.+.        +. ....++...+.+.+++.|+++++++.+..
T Consensus       141 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~  209 (404)
T 3fg2_P          141 DKKHVVVIGAGFIGLEFAATARAKG--LEVDVVELAPRVM--------AR-VVTPEISSYFHDRHSGAGIRMHYGVRATE  209 (404)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCCcch--------hh-ccCHHHHHHHHHHHHhCCcEEEECCEEEE
Confidence            3579999999999999999999997  9999999887542        11 11245667777888889999998865421


Q ss_pred             ---------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                               .+.+.++ .+++|.||+|+|. .|..
T Consensus       210 i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~-~p~~  243 (404)
T 3fg2_P          210 IAAEGDRVTGVVLSDGNTLPCDLVVVGVGV-IPNV  243 (404)
T ss_dssp             EEEETTEEEEEEETTSCEEECSEEEECCCE-EECC
T ss_pred             EEecCCcEEEEEeCCCCEEEcCEEEECcCC-ccCH
Confidence                     2444444 4689999999998 4654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.14  E-value=1.1e-05  Score=78.40  Aligned_cols=91  Identities=18%  Similarity=0.170  Sum_probs=69.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--   96 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~--   96 (334)
                      .++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |.  ...++...+.+.+++.||++++++.+.  
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gv~i~~~~~v~~i  243 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGNRIL--------RK--FDESVINVLENDMKKNNINIVTFADVVEI  243 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcC--CeEEEEecCCccC--------cc--cchhhHHHHHHHHHhCCCEEEECCEEEEE
Confidence            679999999999999999999987  8999999877542        22  134566777788888999999886542  


Q ss_pred             -------eEEecccce--eccCeEEEeccCCCCCC
Q 019876           97 -------SSVSLSELR--QLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 -------~~v~~~~~~--~~yd~lIlATGs~~p~~  122 (334)
                             ..+.+.+++  +++|.||+|+|. .|..
T Consensus       244 ~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~-~p~~  277 (500)
T 1onf_A          244 KKVSDKNLSIHLSDGRIYEHFDHVIYCVGR-SPDT  277 (500)
T ss_dssp             EESSTTCEEEEETTSCEEEEESEEEECCCB-CCTT
T ss_pred             EEcCCceEEEEECCCcEEEECCEEEECCCC-CcCC
Confidence                   123344443  689999999998 4654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.13  E-value=7.6e-06  Score=78.40  Aligned_cols=92  Identities=18%  Similarity=0.257  Sum_probs=69.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-   96 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.  ...++...+.+.+++.|++++.++.+. 
T Consensus       166 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~  233 (450)
T 1ges_A          166 LPERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFDAPL--------PS--FDPMISETLVEVMNAEGPQLHTNAIPKA  233 (450)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHSCEEECSCCEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcC--CEEEEEEeCCchh--------hh--hhHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            4579999999999999999999987  8999999876532        22  123566677778888899999886542 


Q ss_pred             --------eEEecccc-eeccCeEEEeccCCCCCC
Q 019876           97 --------SSVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 --------~~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                              ..+.+.++ .+++|.||+|+|. .|..
T Consensus       234 i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~-~p~~  267 (450)
T 1ges_A          234 VVKNTDGSLTLELEDGRSETVDCLIWAIGR-EPAN  267 (450)
T ss_dssp             EEECTTSCEEEEETTSCEEEESEEEECSCE-EESC
T ss_pred             EEEeCCcEEEEEECCCcEEEcCEEEECCCC-CcCC
Confidence                    12334444 4689999999998 4654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.12  E-value=1e-05  Score=77.69  Aligned_cols=92  Identities=17%  Similarity=0.260  Sum_probs=69.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.  ...++...+.+.+++.||++++++.+..
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~  237 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIVEFLPRAL--------PN--EDADVSKEIEKQFKKLGVTILTATKVES  237 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEECSCEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHcCCEEEeCcEEEE
Confidence            4589999999999999999999997  8999999987532        32  2345667777888888999999876521


Q ss_pred             --------EEecc-cc---eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS-EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~-~~---~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+. ++   .+++|.||+|+|. .|..
T Consensus       238 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~-~p~~  273 (464)
T 2a8x_A          238 IADGGSQVTVTVTKDGVAQELKAEKVLQAIGF-APNV  273 (464)
T ss_dssp             EEECSSCEEEEEESSSCEEEEEESEEEECSCE-EECC
T ss_pred             EEEcCCeEEEEEEcCCceEEEEcCEEEECCCC-CccC
Confidence                    22322 22   4589999999998 4654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.12  E-value=1.1e-05  Score=77.32  Aligned_cols=93  Identities=14%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |. ....++...+.+.+++.|+++++++.+..
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~  216 (452)
T 2cdu_A          148 KAKTITIIGSGYIGAELAEAYSNQN--YNVNLIDGHERVL--------YK-YFDKEFTDILAKDYEAHGVNLVLGSKVAA  216 (452)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEEESSCEEE
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhcC--CEEEEEEcCCchh--------hh-hhhhhHHHHHHHHHHHCCCEEEcCCeeEE
Confidence            3679999999999999999999987  8999999876532        21 11345667778888889999998865421


Q ss_pred             ---------EEecccceeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                               .+..+..++++|.||+|+|. .|..
T Consensus       217 i~~~~~~v~~v~~~g~~i~~D~vv~a~G~-~p~~  249 (452)
T 2cdu_A          217 FEEVDDEIITKTLDGKEIKSDIAILCIGF-RPNT  249 (452)
T ss_dssp             EEEETTEEEEEETTSCEEEESEEEECCCE-EECC
T ss_pred             EEcCCCeEEEEEeCCCEEECCEEEECcCC-CCCH
Confidence                     12232334689999999998 4654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.11  E-value=1.4e-05  Score=76.92  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=69.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCC-CCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP-DHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p-~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        | .  ...++...+.+.+++.|++++.++.+.
T Consensus       177 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~  244 (474)
T 1zmd_A          177 VPEKMVVIGAGVIGVELGSVWQRLG--ADVTAVEFLGHVG--------GVG--IDMEISKNFQRILQKQGFKFKLNTKVT  244 (474)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------CSS--CCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcC--CEEEEEeccCccC--------Ccc--cCHHHHHHHHHHHHHCCCEEEeCceEE
Confidence            3579999999999999999999997  8999999987532        2 2  134566777788888999999887652


Q ss_pred             e---------EEec-----cc-ceeccCeEEEeccCCCCCC
Q 019876           97 S---------SVSL-----SE-LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~-----~~-~~~~yd~lIlATGs~~p~~  122 (334)
                      .         .+.+     .+ ..+++|.||+|+|. .|..
T Consensus       245 ~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~-~p~~  284 (474)
T 1zmd_A          245 GATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR-RPFT  284 (474)
T ss_dssp             EEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE-EECC
T ss_pred             EEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC-CcCC
Confidence            1         2221     12 23589999999998 4654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.11  E-value=1.4e-05  Score=78.11  Aligned_cols=90  Identities=11%  Similarity=-0.002  Sum_probs=69.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc---
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG---   96 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~---   96 (334)
                      ++++|||+|+.|+.+|..+.+.+  .+|+++++.+.+.        |.  ...++...+.+.+++.|++++.++.+.   
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~  282 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTEPLK--------LI--KDNETRAYVLDRMKEQGMEIISGSNVTRIE  282 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------TC--CSHHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccc--------cc--ccHHHHHHHHHHHHhCCcEEEECCEEEEEE
Confidence            89999999999999999999987  8999999887532        22  234566777888888999999887652   


Q ss_pred             ---------eEEecccc--eeccCeEEEeccCCCCCC
Q 019876           97 ---------SSVSLSEL--RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ---------~~v~~~~~--~~~yd~lIlATGs~~p~~  122 (334)
                               ..+.+.++  .+.+|.||+|+|. .|..
T Consensus       283 ~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~-~p~~  318 (523)
T 1mo9_A          283 EDANGRVQAVVAMTPNGEMRIETDFVFLGLGE-QPRS  318 (523)
T ss_dssp             ECTTSBEEEEEEEETTEEEEEECSCEEECCCC-EECC
T ss_pred             EcCCCceEEEEEEECCCcEEEEcCEEEECcCC-ccCC
Confidence                     12334444  4689999999998 4654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.09  E-value=1.8e-05  Score=76.65  Aligned_cols=93  Identities=20%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.  ...++...+.+.+++.||+++.++.+.
T Consensus       196 ~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~v~~~~~v~  263 (491)
T 3urh_A          196 KVPASMIVVGGGVIGLELGSVWARLG--AKVTVVEFLDTIL--------GG--MDGEVAKQLQRMLTKQGIDFKLGAKVT  263 (491)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecccccc--------cc--CCHHHHHHHHHHHHhCCCEEEECCeEE
Confidence            34689999999999999999999997  8999999887542        22  134566777788888899999887652


Q ss_pred             e--------EEeccc------ceeccCeEEEeccCCCCCC
Q 019876           97 S--------SVSLSE------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~--------~v~~~~------~~~~yd~lIlATGs~~p~~  122 (334)
                      .        .+.+.+      ..+++|.||+|+|. .|..
T Consensus       264 ~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~-~p~~  302 (491)
T 3urh_A          264 GAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR-KPST  302 (491)
T ss_dssp             EEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC-EECC
T ss_pred             EEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC-ccCC
Confidence            1        133321      24589999999998 4654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.08  E-value=1.5e-05  Score=76.53  Aligned_cols=92  Identities=16%  Similarity=0.251  Sum_probs=69.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHh-hcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~v~   96 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.  ...++...+.+.+ ++.|++++.++.+.
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~~gv~i~~~~~v~  240 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLG--AEVTVVEFAPRCA--------PT--LDEDVTNALVGALAKNEKMKFMTSTKVV  240 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCCEEECSCEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhC--CEEEEEecCCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEeCCEEE
Confidence            4589999999999999999999987  8999999886532        32  2345667777888 88899999887652


Q ss_pred             e--------EEecc--cc---eeccCeEEEeccCCCCCC
Q 019876           97 S--------SVSLS--EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~--------~v~~~--~~---~~~yd~lIlATGs~~p~~  122 (334)
                      .        .+.+.  ++   .+++|.||+|+|. .|..
T Consensus       241 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~-~p~~  278 (468)
T 2qae_A          241 GGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR-RPFT  278 (468)
T ss_dssp             EEEECSSSEEEEEECC---EEEEEESEEEECSCE-EECC
T ss_pred             EEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc-ccCC
Confidence            1        22332  33   4689999999998 4654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.08  E-value=1.9e-05  Score=76.05  Aligned_cols=92  Identities=11%  Similarity=0.110  Sum_probs=69.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        +.+  ..++...+.+.+++.||+++.++.+..
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~--d~~~~~~~~~~l~~~gv~i~~~~~v~~  253 (478)
T 3dk9_A          186 LPGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL--------RSF--DSMISTNCTEELENAGVEVLKFSQVKE  253 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TTS--CHHHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred             cCccEEEECCCHHHHHHHHHHHHcC--CeEEEEEeCCccc--------ccc--CHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            4689999999999999999999997  8999999876532        221  345667777888889999998876521


Q ss_pred             ----------EEeccc--------ceeccCeEEEeccCCCCCC
Q 019876           98 ----------SVSLSE--------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ----------~v~~~~--------~~~~yd~lIlATGs~~p~~  122 (334)
                                .+...+        ..+++|.||+|+|. .|..
T Consensus       254 i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~-~p~~  295 (478)
T 3dk9_A          254 VKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR-VPNT  295 (478)
T ss_dssp             EEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE-EESC
T ss_pred             EEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc-ccCC
Confidence                      133332        24589999999998 4654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.08  E-value=1.3e-05  Score=77.81  Aligned_cols=94  Identities=17%  Similarity=0.129  Sum_probs=70.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCC-CCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~-~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ..++++|||+|+.|+.+|..|.+..+ +.+|+++++.+.+.        |.  ...++...+.+.+++.||++++++.+.
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~  259 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL--------RG--FDETIREEVTKQLTANGIEIMTNENPA  259 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEEESCCEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence            45799999999999999999999821 28999999987532        22  134566777788888999999886542


Q ss_pred             e---------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           97 S---------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                      .         .+.+.++ .+++|.||+|+|. .|..
T Consensus       260 ~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~-~p~~  294 (495)
T 2wpf_A          260 KVSLNTDGSKHVTFESGKTLDVDVVMMAIGR-IPRT  294 (495)
T ss_dssp             EEEECTTSCEEEEETTSCEEEESEEEECSCE-EECC
T ss_pred             EEEEcCCceEEEEECCCcEEEcCEEEECCCC-cccc
Confidence            1         2333344 4689999999998 4654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.08  E-value=1.2e-05  Score=77.87  Aligned_cols=92  Identities=21%  Similarity=0.148  Sum_probs=70.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhc---CCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~---~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ..++++|||+|+.|+.+|..|.+.   +  .+|+++++.+.+.        |.  ...++...+.+.+++.|+++++++.
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~  253 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIFNAYKARG--GQVDLAYRGDMIL--------RG--FDSELRKQLTEQLRANGINVRTHEN  253 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhccCc--CeEEEEEcCCCcc--------cc--cCHHHHHHHHHHHHhCCCEEEeCCE
Confidence            457999999999999999999998   6  8999999987532        32  1345667777888889999998865


Q ss_pred             Ece---------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           95 LGS---------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        95 v~~---------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                      +..         .+.+.++ .+++|.||+|+|. .|..
T Consensus       254 v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~-~p~~  290 (490)
T 1fec_A          254 PAKVTKNADGTRHVVFESGAEADYDVVMLAIGR-VPRS  290 (490)
T ss_dssp             EEEEEECTTSCEEEEETTSCEEEESEEEECSCE-EESC
T ss_pred             EEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC-CcCc
Confidence            421         2334444 4689999999998 4654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.06  E-value=2.2e-05  Score=76.08  Aligned_cols=93  Identities=16%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ..+++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.+  ..++...+.+.+++. ++++.++.+.
T Consensus       172 ~~~k~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~--d~~~~~~l~~~l~~~-V~i~~~~~v~  238 (492)
T 3ic9_A          172 DLPKSVAVFGPGVIGLELGQALSRLG--VIVKVFGRSGSVA--------NLQ--DEEMKRYAEKTFNEE-FYFDAKARVI  238 (492)
T ss_dssp             SCCSEEEEESSCHHHHHHHHHHHHTT--CEEEEECCTTCCT--------TCC--CHHHHHHHHHHHHTT-SEEETTCEEE
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEECCccc--------ccC--CHHHHHHHHHHHhhC-cEEEECCEEE
Confidence            34689999999999999999999997  8999999987642        221  245666777777776 9999887652


Q ss_pred             e--------EEecc--cc---eeccCeEEEeccCCCCCCC
Q 019876           97 S--------SVSLS--EL---RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        97 ~--------~v~~~--~~---~~~yd~lIlATGs~~p~~~  123 (334)
                      .        .+...  ++   .+++|.||+|+|. .|...
T Consensus       239 ~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~-~p~~~  277 (492)
T 3ic9_A          239 STIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR-KANVD  277 (492)
T ss_dssp             EEEECSSSEEEEEECTTCCEEEEEESEEEECSCC-EESCS
T ss_pred             EEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC-ccCCC
Confidence            1        23332  22   4689999999998 46543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.06  E-value=2.4e-05  Score=75.28  Aligned_cols=93  Identities=14%  Similarity=0.274  Sum_probs=70.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.  ...++...+.+.+++.||+++.++.+.
T Consensus       178 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~v~~~~~v~  245 (476)
T 3lad_A          178 NVPGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMDKFL--------PA--VDEQVAKEAQKILTKQGLKILLGARVT  245 (476)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEECCEEE
Confidence            34679999999999999999999997  8999999987532        32  134566777788888999999887653


Q ss_pred             e--------EEeccc----ceeccCeEEEeccCCCCCC
Q 019876           97 S--------SVSLSE----LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~--------~v~~~~----~~~~yd~lIlATGs~~p~~  122 (334)
                      .        .+.+.+    ..+++|.||+|+|. .|..
T Consensus       246 ~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~-~p~~  282 (476)
T 3lad_A          246 GTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR-RPVT  282 (476)
T ss_dssp             EEEECSSCEEEEEESSSEEEEEEESEEEECSCE-EECC
T ss_pred             EEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC-cccC
Confidence            1        123322    24589999999998 4654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.06  E-value=1.6e-05  Score=75.70  Aligned_cols=93  Identities=16%  Similarity=0.206  Sum_probs=68.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|++.+  .+|+++++.+.+.        +.. ...++...+.+.+++.|+++++++.+..
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~  216 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAARVL--------ERV-TAPPVSAFYEHLHREAGVDIRTGTQVCG  216 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTT--------TTT-SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEEeCCccc--------cch-hhHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence            4689999999999999999999997  8999999876532        110 1235566677777888999998865421


Q ss_pred             -----------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 -----------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -----------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                                 .+.+.++ .+.+|.||+|+|. .|..
T Consensus       217 i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~-~p~~  252 (431)
T 1q1r_A          217 FEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL-IPNC  252 (431)
T ss_dssp             EEECTTTCCEEEEEETTSCEEECSEEEECCCE-EECC
T ss_pred             EEeccCCCcEEEEEeCCCCEEEcCEEEECCCC-CcCc
Confidence                       2333333 3589999999998 4543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.05  E-value=2.1e-05  Score=76.37  Aligned_cols=92  Identities=16%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..+.+.+  .+|+++++.+.+.        |.  ...++...+.+.+++.|+++++++.+..
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~V~~  248 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVL--------PY--EDADAALVLEESFAERGVRLFKNARAAS  248 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTT--CCEEEECSSSSSS--------CC--SSHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            4579999999999999999999987  8999999887532        32  2345667778888889999998865521


Q ss_pred             --------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                              .+...++ .+.+|.||+|+|. .|..
T Consensus       249 i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~-~p~~  281 (499)
T 1xdi_A          249 VTRTGAGVLVTMTDGRTVEGSHALMTIGS-VPNT  281 (499)
T ss_dssp             EEECSSSEEEEETTSCEEEESEEEECCCE-EECC
T ss_pred             EEEeCCEEEEEECCCcEEEcCEEEECCCC-CcCC
Confidence                    2223333 4689999999998 4654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.04  E-value=2e-05  Score=75.72  Aligned_cols=93  Identities=11%  Similarity=0.087  Sum_probs=71.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++++|||+|+.|+.+|..+.+.+  .+|+++++.+.+.        |.+  ..++...+.+.+++.|++++.++.+.
T Consensus       168 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vt~v~~~~~~l--------~~~--~~~~~~~l~~~l~~~Gv~i~~~~~v~  235 (463)
T 4dna_A          168 ALPESILIAGGGYIAVEFANIFHGLG--VKTTLIYRGKEIL--------SRF--DQDMRRGLHAAMEEKGIRILCEDIIQ  235 (463)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------ccc--CHHHHHHHHHHHHHCCCEEECCCEEE
Confidence            34689999999999999999999987  8999999876532        221  24566777888888999999886542


Q ss_pred             ---------eEEe-cccceeccCeEEEeccCCCCCC
Q 019876           97 ---------SSVS-LSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ---------~~v~-~~~~~~~yd~lIlATGs~~p~~  122 (334)
                               ..+. +.++++.+|.||+|+|. .|..
T Consensus       236 ~i~~~~~~~~~v~~~~~g~i~aD~Vv~a~G~-~p~~  270 (463)
T 4dna_A          236 SVSADADGRRVATTMKHGEIVADQVMLALGR-MPNT  270 (463)
T ss_dssp             EEEECTTSCEEEEESSSCEEEESEEEECSCE-EESC
T ss_pred             EEEEcCCCEEEEEEcCCCeEEeCEEEEeeCc-ccCC
Confidence                     1344 54555789999999998 4654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.04  E-value=2.5e-05  Score=70.65  Aligned_cols=90  Identities=22%  Similarity=0.217  Sum_probs=66.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +    ...+...+.+.+++.||++++++.+..
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~----~~~~~~~l~~~l~~~gv~i~~~~~v~~  209 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGFR--------A----EKILIKRLMDKVENGNIILHTNRTLEE  209 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------C----CHHHHHHHHHHHHTSSEEEECSCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeCCccc--------c----CHHHHHHHHHhcccCCeEEEcCceeEE
Confidence            4579999999999999999999987  8999999876431        1    134555666677788999998876521


Q ss_pred             ---------EEeccc-------ceeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLSE-------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~~-------~~~~yd~lIlATGs~~p~~  122 (334)
                               .+.+.+       ..+++|.||+|+|. .|..
T Consensus       210 i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~-~p~~  249 (320)
T 1trb_A          210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH-SPNT  249 (320)
T ss_dssp             EEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCE-EESC
T ss_pred             EEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCC-CCCh
Confidence                     133322       24589999999998 4554

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.04  E-value=1.2e-05  Score=77.39  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=69.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.  ...++...+.+.+++.||+++.++.+..
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~  243 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFASEIV--------PT--MDAEIRKQFQRSLEKQGMKFKLKTKVVG  243 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCccc--------cc--ccHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence            4689999999999999999999997  8999999987542        32  1345667777888889999998876521


Q ss_pred             --------EEecc---c---ceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS---E---LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~---~---~~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.   +   ..+++|.||+|+|. .|..
T Consensus       244 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~-~p~~  281 (470)
T 1dxl_A          244 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR-TPFT  281 (470)
T ss_dssp             EECSSSSEEEEEEESSSCCCEEEEESEEECCCCE-EECC
T ss_pred             EEEcCCeEEEEEEecCCCcceEEECCEEEECCCC-CcCC
Confidence                    22322   2   24689999999998 4654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.03  E-value=4.3e-06  Score=79.09  Aligned_cols=40  Identities=18%  Similarity=0.313  Sum_probs=36.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      |+|+|||||++|++||..|++.+  .+|+|+|+++.+||.+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~   40 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNG--HEIIVLEKSAMIGGRFT   40 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCCceeE
Confidence            58999999999999999999997  99999999998888653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.02  E-value=1.8e-05  Score=78.28  Aligned_cols=92  Identities=14%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.  ...++...+.+.+++.|++++.++.+..
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~v~~  253 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENLRERG--IEVTLVEMANQVM--------PP--IDYEMAAYVHEHMKNHDVELVFEDGVDA  253 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCccc--------cc--CCHHHHHHHHHHHHHcCCEEEECCeEEE
Confidence            3579999999999999999999997  8999999876532        22  2345667777888889999998866531


Q ss_pred             ------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 ------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                            .+.+.++ .+++|.||+|+|. .|..
T Consensus       254 i~~~~~~v~~~~g~~i~~D~Vi~a~G~-~p~~  284 (588)
T 3ics_A          254 LEENGAVVRLKSGSVIQTDMLILAIGV-QPES  284 (588)
T ss_dssp             EEGGGTEEEETTSCEEECSEEEECSCE-EECC
T ss_pred             EecCCCEEEECCCCEEEcCEEEEccCC-CCCh
Confidence                  2344444 4689999999998 4554

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.02  E-value=6.7e-06  Score=76.90  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=38.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC-CCCccccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFGLVR   61 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~-~~~gg~~~   61 (334)
                      ...++|+|||||++|++||..|.+.+  .+|+|+|++ +.+||.+.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G--~~V~VlE~~~~~vGGr~~   85 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAG--HDVTILEANANRVGGRIK   85 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTS--CEEEEECSCSSCCBTTCC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCC--CcEEEEeccccccCCcee
Confidence            35689999999999999999999997  999999999 88888664

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.01  E-value=5e-06  Score=78.54  Aligned_cols=39  Identities=31%  Similarity=0.594  Sum_probs=36.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      |+|+|||||.+|++||.+|++.+  .+|+|+|+++.+||..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~   39 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAG--HEVEVFERLPITGGRF   39 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CceEEEeCCCCCCCce
Confidence            58999999999999999999997  9999999999888765

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.00  E-value=3.2e-06  Score=80.79  Aligned_cols=42  Identities=19%  Similarity=0.273  Sum_probs=37.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcC----CCCeEEEEcCCCCCcccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~----~~~~v~vie~~~~~gg~~   60 (334)
                      +++|+|||||++|++||.+|.+.|    |+.+|+|+|+.+.+||..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~   50 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKI   50 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceE
Confidence            479999999999999999999986    568999999998888764

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.00  E-value=3e-05  Score=74.09  Aligned_cols=92  Identities=17%  Similarity=0.110  Sum_probs=67.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        +. ....++...+.+.+++. ++++.+..+..
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~-v~i~~~~~v~~  214 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQG--KNVTMIVRGERVL--------RR-SFDKEVTDILEEKLKKH-VNLRLQEITMK  214 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHTTT-SEEEESCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEEcCCccc--------hh-hcCHHHHHHHHHHHHhC-cEEEeCCeEEE
Confidence            4579999999999999999999997  9999999987532        21 01345667777778887 99988865521


Q ss_pred             --------EEecccceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLSELRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~~~~~~yd~lIlATGs~~p~~  122 (334)
                              .+..+..++++|.||+|+|. .|..
T Consensus       215 i~~~~~v~~v~~~g~~i~~D~Vv~a~G~-~p~~  246 (449)
T 3kd9_A          215 IEGEERVEKVVTDAGEYKAELVILATGI-KPNI  246 (449)
T ss_dssp             EECSSSCCEEEETTEEEECSEEEECSCE-EECC
T ss_pred             EeccCcEEEEEeCCCEEECCEEEEeeCC-ccCH
Confidence                    12223334689999999998 4553

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.99  E-value=2.9e-05  Score=74.95  Aligned_cols=93  Identities=16%  Similarity=0.130  Sum_probs=70.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++++|||+|+.|+.+|..+++.+  .+|+++++.+.+.        +.+  ..++...+.+.+++.|++++.++.+.
T Consensus       189 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~Gv~i~~~~~V~  256 (484)
T 3o0h_A          189 KLPKSIVIVGGGYIGVEFANIFHGLG--VKTTLLHRGDLIL--------RNF--DYDLRQLLNDAMVAKGISIIYEATVS  256 (484)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHHTCEEESSCCEE
T ss_pred             hcCCcEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCccc--------ccc--CHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence            34689999999999999999999987  8999999876532        221  24566677777888899999886552


Q ss_pred             e--------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           97 S--------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~--------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                      .        .+.+.++ .+.+|.||+|+|. .|..
T Consensus       257 ~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~-~p~~  290 (484)
T 3o0h_A          257 QVQSTENCYNVVLTNGQTICADRVMLATGR-VPNT  290 (484)
T ss_dssp             EEEECSSSEEEEETTSCEEEESEEEECCCE-EECC
T ss_pred             EEEeeCCEEEEEECCCcEEEcCEEEEeeCC-CcCC
Confidence            1        2444444 4689999999998 4554

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=97.98  E-value=5.1e-06  Score=78.68  Aligned_cols=47  Identities=23%  Similarity=0.206  Sum_probs=39.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc---cccCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR---SGVAPDH   68 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~---~~~~p~~   68 (334)
                      ++|+|||||++|++||..|++.|  .+|+|+|+++.+||.+.   .++.|++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t~~~~cipg~   51 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAG--KKVLLLEGGERLGGRAYSRESRNVPGL   51 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCCEEECSSSTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCccCeecceeccCCCCc
Confidence            58999999999999999999997  89999999888888663   2444554

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.98  E-value=2.9e-05  Score=74.68  Aligned_cols=93  Identities=13%  Similarity=0.171  Sum_probs=69.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ..++++|||+|+.|+.+|..+.+. +  .+|+++++.+.+.        |.. ...++...+.+.+++.|++++.++.+.
T Consensus       158 ~~~~vvViGgG~~g~e~A~~l~~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~  226 (472)
T 3iwa_A          158 EVSKAVIVGGGFIGLEMAVSLADMWG--IDTTVVELADQIM--------PGF-TSKSLSQMLRHDLEKNDVVVHTGEKVV  226 (472)
T ss_dssp             SCSEEEEECCSHHHHHHHHHHHHHHC--CEEEEECSSSSSS--------TTT-SCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcC--CcEEEEEccCccc--------ccc-cCHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence            357999999999999999999998 8  8999999876532        211 124566777788888999999886542


Q ss_pred             e--------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           97 S--------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~--------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                      .        .+.+.++ .+++|.||+|+|. .|..
T Consensus       227 ~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~-~p~~  260 (472)
T 3iwa_A          227 RLEGENGKVARVITDKRTLDADLVILAAGV-SPNT  260 (472)
T ss_dssp             EEEESSSBEEEEEESSCEEECSEEEECSCE-EECC
T ss_pred             EEEccCCeEEEEEeCCCEEEcCEEEECCCC-CcCH
Confidence            1        1333333 4689999999998 4553

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.97  E-value=6.7e-06  Score=78.92  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      +++|+|||||.+|++||.+|++.+...+|+|+|+++.+||.+.
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~   44 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIR   44 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCC
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceE
Confidence            3699999999999999999999972229999999999888763

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.96  E-value=8.9e-06  Score=78.46  Aligned_cols=43  Identities=33%  Similarity=0.460  Sum_probs=38.6

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ....++|+|||||++|++||..|.+.+  .+|+|+|+.+.+||.+
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAG--YKVTVLEARTRPGGRV   50 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTC
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeccCCCCCce
Confidence            345689999999999999999999987  8999999999998864

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.95  E-value=7.4e-06  Score=76.60  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=32.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      .+||+||||||+|+++|..|++.|  ++|+|||+.+.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G--~~v~v~Er~~~~   36 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHG--IKVTIYERNSAA   36 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--CCEEEEecCCCC
Confidence            379999999999999999999997  999999987653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.94  E-value=4.1e-05  Score=73.88  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ..+++++|||+|+.|+.+|..|++.+  .+|+++++.. +        .+.+  ..++...+.+.+++.||+++.++.+.
T Consensus       185 ~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~-~--------l~~~--d~~~~~~l~~~l~~~Gv~i~~~~~v~  251 (483)
T 3dgh_A          185 REPGKTLVVGAGYIGLECAGFLKGLG--YEPTVMVRSI-V--------LRGF--DQQMAELVAASMEERGIPFLRKTVPL  251 (483)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSC-S--------STTS--CHHHHHHHHHHHHHTTCCEEETEEEE
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCC-C--------Cccc--CHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence            34679999999999999999999997  8999998742 1        1222  34566777888888999999887652


Q ss_pred             e---------EEecccc------eeccCeEEEeccCCCCCC
Q 019876           97 S---------SVSLSEL------RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~~~~------~~~yd~lIlATGs~~p~~  122 (334)
                      .         .+.+.+.      .+.+|.||+|+|. .|..
T Consensus       252 ~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~-~p~~  291 (483)
T 3dgh_A          252 SVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR-KGLV  291 (483)
T ss_dssp             EEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE-EECC
T ss_pred             EEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc-ccCc
Confidence            1         1333222      3589999999998 4654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.94  E-value=3.3e-05  Score=75.89  Aligned_cols=92  Identities=14%  Similarity=0.156  Sum_probs=68.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        |.  ...++...+.+.+++.|++++.++.+..
T Consensus       150 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~v~~  217 (565)
T 3ntd_A          150 NVEHATVVGGGFIGLEMMESLHHLG--IKTTLLELADQVM--------TP--VDREMAGFAHQAIRDQGVDLRLGTALSE  217 (565)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEEETCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--CcEEEEEcCCccc--------hh--cCHHHHHHHHHHHHHCCCEEEeCCeEEE
Confidence            3579999999999999999999997  9999999986531        31  1345666777778889999998765421


Q ss_pred             ---------------------------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           98 ---------------------------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------------------------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                                                 .+...++ .+++|.||+|+|. .|..
T Consensus       218 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~  269 (565)
T 3ntd_A          218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV-RPET  269 (565)
T ss_dssp             EEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE-EECC
T ss_pred             EeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC-ccch
Confidence                                       1222233 3589999999998 4553

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.93  E-value=4.8e-05  Score=75.59  Aligned_cols=37  Identities=24%  Similarity=0.448  Sum_probs=33.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||||+||++||..|++.+++.+|+|+|+.+.
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~   41 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            3689999999999999999999866689999999754

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.93  E-value=7.5e-06  Score=79.75  Aligned_cols=41  Identities=22%  Similarity=0.209  Sum_probs=37.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      .++|+|||||++|++||..|++.|  .+|+|+|+++.+||.+.
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GGr~~   44 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTY   44 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcee
Confidence            468999999999999999999997  89999999999988763

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.92  E-value=3.7e-05  Score=74.48  Aligned_cols=94  Identities=16%  Similarity=0.093  Sum_probs=67.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .++|+|||+|+.|+.+|..|.+.+  .+.+|+++++.+.+.+.    .     .+.++...+.+.+++.||++++++.+.
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~----~-----l~~~~~~~~~~~l~~~GV~v~~~~~V~  250 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK----I-----LPEYLSNWTMEKVRREGVKVMPNAIVQ  250 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT----T-----SCHHHHHHHHHHHHTTTCEEECSCCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc----c-----CCHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence            579999999999999999987732  13899999886542111    1     123566677778888999999886542


Q ss_pred             e--------EEecccc-eeccCeEEEeccCCCCCC
Q 019876           97 S--------SVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~--------~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                      .        .+.+.++ .+.+|.||+|+|. .|..
T Consensus       251 ~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~-~pn~  284 (493)
T 1m6i_A          251 SVGVSSGKLLIKLKDGRKVETDHIVAAVGL-EPNV  284 (493)
T ss_dssp             EEEEETTEEEEEETTSCEEEESEEEECCCE-EECC
T ss_pred             EEEecCCeEEEEECCCCEEECCEEEECCCC-CccH
Confidence            1        2334444 4689999999998 4654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.91  E-value=4.4e-05  Score=78.69  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=32.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~   55 (334)
                      ..+|+|||||++|+++|.+|++.+  . +|+|+|+.+.
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G--~~~V~vlE~~~~   39 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRG--WNNITVLDQGPL   39 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCC
Confidence            579999999999999999999997  7 8999999865

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.91  E-value=4.9e-05  Score=73.44  Aligned_cols=92  Identities=12%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ..+++++|||+|+.|+.+|..|++.+  .+|+++++...         .+.+  ..++...+.+.+++.||+++.++.+.
T Consensus       183 ~~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~---------l~~~--d~~~~~~l~~~l~~~gv~~~~~~~v~  249 (488)
T 3dgz_A          183 ESPGKTLVVGASYVALECAGFLTGIG--LDTTVMMRSIP---------LRGF--DQQMSSLVTEHMESHGTQFLKGCVPS  249 (488)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCS---------STTS--CHHHHHHHHHHHHHTTCEEEETEEEE
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEcCcc---------cccC--CHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence            34578999999999999999999997  89999987531         1222  34567777888888999999886542


Q ss_pred             e---------EEeccc---ce---eccCeEEEeccCCCCCC
Q 019876           97 S---------SVSLSE---LR---QLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~~~---~~---~~yd~lIlATGs~~p~~  122 (334)
                      .         .+...+   ++   +++|.||+|+|. .|..
T Consensus       250 ~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~-~p~~  289 (488)
T 3dgz_A          250 HIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR-VPET  289 (488)
T ss_dssp             EEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE-EESC
T ss_pred             EEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC-Cccc
Confidence            1         122222   22   579999999998 4654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.91  E-value=5.4e-05  Score=73.85  Aligned_cols=92  Identities=16%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ..+++++|||+|+.|+.+|..|++.+  .+|+++++.. +        .+.+  ..++...+.+.+++.||+++.+..+.
T Consensus       208 ~~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~-~--------l~~~--d~~~~~~~~~~l~~~GV~v~~~~~v~  274 (519)
T 3qfa_A          208 YCPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRSI-L--------LRGF--DQDMANKIGEHMEEHGIKFIRQFVPI  274 (519)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-S--------STTS--CHHHHHHHHHHHHHTTCEEEESEEEE
T ss_pred             hcCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEeccc-c--------cccC--CHHHHHHHHHHHHHCCCEEEeCCeEE
Confidence            34568999999999999999999997  8999998742 1        1322  34567777788888999999885431


Q ss_pred             e------------EEec--ccc----eeccCeEEEeccCCCCCC
Q 019876           97 S------------SVSL--SEL----RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~------------~v~~--~~~----~~~yd~lIlATGs~~p~~  122 (334)
                      .            .+..  .++    ..++|.||+|+|. .|..
T Consensus       275 ~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~-~p~~  317 (519)
T 3qfa_A          275 KVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR-DACT  317 (519)
T ss_dssp             EEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCE-EESC
T ss_pred             EEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCC-cccC
Confidence            1            1111  122    2469999999998 4654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.91  E-value=1.1e-05  Score=77.40  Aligned_cols=42  Identities=21%  Similarity=0.306  Sum_probs=38.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      +++|+|||||++|+++|.+|.+.+++.+|+|+|+++.+||.+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~   45 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKV   45 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTC
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCcee
Confidence            579999999999999999999997779999999998888754

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.90  E-value=1.1e-05  Score=76.22  Aligned_cols=43  Identities=23%  Similarity=0.350  Sum_probs=37.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ..++|+|||||++|++||..|++.++ .+|+|+|+++.+||.+.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~-~~v~v~E~~~~~GG~~~   47 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGF-HDYTILERTDHVGGKCH   47 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSSCSSTTCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEECCCCCCCccc
Confidence            46799999999999999999999842 79999999999988653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.89  E-value=5.9e-05  Score=68.62  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.    .+....+.+.+++.+++++.+..+..
T Consensus       151 ~~~~v~viG~G~~g~e~a~~l~~~g--~~V~~v~~~~~~~--------~~----~~~~~~l~~~l~~~gv~v~~~~~v~~  216 (335)
T 2zbw_A          151 QGKRVLIVGGGDSAVDWALNLLDTA--RRITLIHRRPQFR--------AH----EASVKELMKAHEEGRLEVLTPYELRR  216 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTS--SEEEEECSSSSCC--------SC----HHHHHHHHHHHHTTSSEEETTEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEcCCccC--------cc----HHHHHHHHhccccCCeEEecCCccee
Confidence            3579999999999999999999886  8999999876431        21    23455667777888999998865521


Q ss_pred             --------EEecc---cc---eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS---EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~---~~---~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.   ++   .+++|.||+|+|. .|..
T Consensus       217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~  254 (335)
T 2zbw_A          217 VEGDERVRWAVVFHNQTQEELALEVDAVLILAGY-ITKL  254 (335)
T ss_dssp             EEESSSEEEEEEEETTTCCEEEEECSEEEECCCE-EEEC
T ss_pred             EccCCCeeEEEEEECCCCceEEEecCEEEEeecC-CCCc
Confidence                    23333   33   4589999999998 4543

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.89  E-value=9.9e-06  Score=77.69  Aligned_cols=42  Identities=19%  Similarity=0.078  Sum_probs=38.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ..++|+|||||.+|++||..|++.|  .+|+|+|+++.+||.+.
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~   51 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAA   51 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCcccc
Confidence            4579999999999999999999997  99999999999999764

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.88  E-value=7.4e-06  Score=79.81  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=37.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ..++|+|||||++||+||..|.+.| ..+|+|+|+++.+||.+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G-~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNG-IQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTT-CCSEEEECSSSSSBTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcC-CCCEEEEeCCCCCCCce
Confidence            3469999999999999999999984 37999999999999875

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.87  E-value=5.1e-05  Score=69.97  Aligned_cols=99  Identities=15%  Similarity=0.156  Sum_probs=64.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCC-cEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~-i~~~~~~~v~   96 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+...   ..-+.......+...+.+.+++.| ++++.+..+.
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~~~~---~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~  239 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNG--SDIALYTSTTGLNDP---DADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVK  239 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTT--CEEEEECC-------------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcC--CeEEEEecCCCCCCC---CCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEE
Confidence            3569999999999999999999987  899999987653210   011222223455667777778886 9998876542


Q ss_pred             e--------EEecccce-e-ccCeEEEeccCCCCCC
Q 019876           97 S--------SVSLSELR-Q-LYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~--------~v~~~~~~-~-~yd~lIlATGs~~p~~  122 (334)
                      .        .+.+.+++ . .+|.+|+|||. .|..
T Consensus       240 ~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~-~~~~  274 (369)
T 3d1c_A          240 DIDFNNGQYHISFDSGQSVHTPHEPILATGF-DATK  274 (369)
T ss_dssp             EEEEETTEEEEEESSSCCEEESSCCEECCCB-CGGG
T ss_pred             EEEecCCceEEEecCCeEeccCCceEEeecc-CCcc
Confidence            1        23333443 3 46999999998 4544

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.87  E-value=7.1e-06  Score=78.27  Aligned_cols=41  Identities=29%  Similarity=0.362  Sum_probs=37.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      .++|+|||||++|++||.+|++.+  .+|+|+|+++.+||.+.
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~~   45 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAG--LSVAVIEARDRVGGRTW   45 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCCCCCcee
Confidence            469999999999999999999987  89999999999988763

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.86  E-value=3.6e-05  Score=74.78  Aligned_cols=91  Identities=19%  Similarity=0.274  Sum_probs=66.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcC------------CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC   87 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~------------~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i   87 (334)
                      .+++|||||+.|+.+|..|....            ...+|+|+|..+.+        .|.+  .+++..+..+.+++.||
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i--------l~~~--~~~~~~~~~~~L~~~GV  287 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV--------LNMF--EKKLSSYAQSHLENTSI  287 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS--------STTS--CHHHHHHHHHHHHHTTC
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc--------ccCC--CHHHHHHHHHHHHhcce
Confidence            57999999999999999886431            13689999998764        2332  35677788888999999


Q ss_pred             EEEeCeEEce----EE----ecccc-----eeccCeEEEeccCCCCC
Q 019876           88 SFFGNVTLGS----SV----SLSEL-----RQLYHVVVLAYGAESDR  121 (334)
Q Consensus        88 ~~~~~~~v~~----~v----~~~~~-----~~~yd~lIlATGs~~p~  121 (334)
                      ++++++.+..    .+    ...++     +++||.||+|+|. .|+
T Consensus       288 ~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv-~~~  333 (502)
T 4g6h_A          288 KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN-KAR  333 (502)
T ss_dssp             EEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCE-ECC
T ss_pred             eeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCC-cCC
Confidence            9999987631    11    11222     3689999999998 354

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.85  E-value=1.3e-05  Score=75.55  Aligned_cols=41  Identities=29%  Similarity=0.365  Sum_probs=37.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~~~~gg~~~   61 (334)
                      .++|+|||||++|++||..|.+. +  .+|+|+|+++.+||.+.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g--~~v~v~E~~~~~GG~~~   48 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLD--KRVLVLERRPHIGGNAY   48 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSC--CCEEEECSSSSSSGGGC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeee
Confidence            57999999999999999999998 6  89999999999988764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.85  E-value=1.2e-05  Score=77.11  Aligned_cols=42  Identities=21%  Similarity=0.274  Sum_probs=37.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ..++|+|||||++|++||..|++.|  .+|+|+|+++.+||.+.
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g--~~v~v~E~~~~~GGr~~   56 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVG   56 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceee
Confidence            4579999999999999999999987  99999999999988753

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.84  E-value=1.6e-05  Score=74.87  Aligned_cols=42  Identities=31%  Similarity=0.331  Sum_probs=38.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|+|+.+.+||.+.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~   69 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSG--QRVLIVDRRPHIGGNAY   69 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCC--CceEEEeccCCCCCccc
Confidence            4579999999999999999999986  89999999999988765

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.81  E-value=4.6e-05  Score=72.88  Aligned_cols=38  Identities=18%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||+|..|+.+|..|.+..++.+|+++++.+.
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            46799999999999999999999855599999998864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.81  E-value=1.5e-05  Score=77.06  Aligned_cols=40  Identities=18%  Similarity=0.153  Sum_probs=37.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ++|+|||||++|++||..|.+.+  .+|+|+|+++.+||.+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GGr~~   79 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAG--FKTLLLEARDRIGGRSW   79 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSBSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcce
Confidence            79999999999999999999987  99999999999998753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.80  E-value=8e-05  Score=67.55  Aligned_cols=87  Identities=15%  Similarity=0.132  Sum_probs=61.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +    ...+   ...+.+..||+++.+..+..
T Consensus       172 ~~~~v~vvG~G~~g~e~a~~l~~~g--~~v~~v~~~~~~~--------~----~~~~---~~~l~~~~gv~i~~~~~v~~  234 (338)
T 3itj_A          172 RNKPLAVIGGGDSACEEAQFLTKYG--SKVFMLVRKDHLR--------A----STIM---QKRAEKNEKIEILYNTVALE  234 (338)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------S----CHHH---HHHHHHCTTEEEECSEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCccC--------C----CHHH---HHHHHhcCCeEEeecceeEE
Confidence            4679999999999999999999987  8999999876531        1    1122   22223445999998876521


Q ss_pred             ---------EEeccc------ceeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLSE------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~~------~~~~yd~lIlATGs~~p~~  122 (334)
                               .+.+.+      ..+++|.||+|+|. .|..
T Consensus       235 i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~  273 (338)
T 3itj_A          235 AKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGH-TPAT  273 (338)
T ss_dssp             EEESSSSEEEEEEEETTTTEEEEEECSEEEECSCE-EECC
T ss_pred             EEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCC-CCCh
Confidence                     133333      23589999999998 4544

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.78  E-value=2.1e-05  Score=76.07  Aligned_cols=41  Identities=24%  Similarity=0.296  Sum_probs=37.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ..++|+|||||++|++||..|.+.+  .+|+|+|+.+.+||.+
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~   52 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKL   52 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCce
Confidence            3579999999999999999999987  9999999999998865

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.78  E-value=2.4e-05  Score=73.43  Aligned_cols=41  Identities=24%  Similarity=0.264  Sum_probs=37.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      .++|+|||||++|+++|..|.+.+  .+|+|+|+++.+||.+.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~~   43 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNSY   43 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGGC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEEecCCcCCccc
Confidence            479999999999999999999986  99999999999988763

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.76  E-value=2.8e-05  Score=75.17  Aligned_cols=41  Identities=37%  Similarity=0.468  Sum_probs=37.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ..++|+|||||++|++||..|.+.|  .+|+|+|+.+.+||.+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g--~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRV   72 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCce
Confidence            4679999999999999999999997  9999999999998865

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.74  E-value=2.4e-05  Score=72.95  Aligned_cols=40  Identities=25%  Similarity=0.214  Sum_probs=36.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ++|+|||||++|+++|..|.+.+  .+|+|+|+++.+||.+.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~~   41 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNAY   41 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCcceE
Confidence            58999999999999999999987  89999999998888753

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.73  E-value=1.2e-05  Score=78.06  Aligned_cols=160  Identities=14%  Similarity=0.046  Sum_probs=85.2

Q ss_pred             ccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcC------CCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          107 LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG------HPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       107 ~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .||++++++|+. |..+++++.+.++++...........      .....  ........+|+|||||.+|+.+|..|++
T Consensus        37 ~~~~l~~~~g~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dVvIVGgG~aGl~aA~~La~  113 (497)
T 2bry_A           37 SFQGLCRALGVE-SGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQ--QGQACTNTKCLVVGAGPCGLRAAVELAL  113 (497)
T ss_dssp             HHHHHHHHHTCC-TTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGG--GGTTTTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-CCCCcEeehhhHHHHHHHHHHHhhhhhhhhhcccccc--CccccCCCCEEEECccHHHHHHHHHHHH
Confidence            689999999994 77777766554444433221111000      00000  0011246799999999999999999996


Q ss_pred             CCcccccccccHHHHHHHhcCCcceEEEEeecCcccc----CCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccH
Q 019876          181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA----ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR  256 (334)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~----~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~  256 (334)
                                          .|. +|+|+++++.+..    ...+..+ +.+...|+.-...  .+.  ........   
T Consensus       114 --------------------~G~-~V~liEk~~~~g~~~~~~~~~~~~-~~l~~~g~~~~~~--~~~--~~~~~~~~---  164 (497)
T 2bry_A          114 --------------------LGA-RVVLVEKRIKFSRHNVLHLWPFTI-HDLRALGAKKFYG--RFC--TGTLDHIS---  164 (497)
T ss_dssp             --------------------TTC-EEEEEESCSSCCCCCEEECCHHHH-HHHHTTTHHHHCT--TTT--CTTCCEEE---
T ss_pred             --------------------CCC-eEEEEEeccccCCCCcccCChhHH-HHHHHcCCccccc--ccc--ccccccCC---
Confidence                                676 6999999865421    1222222 2333333210000  000  00000000   


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEE
Q 019876          257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHF  309 (334)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~  309 (334)
                       ..++.+.|.+.+.         +.||++++++.+++|.... .++....|.+
T Consensus       165 -~~~l~~~L~~~~~---------~~gv~v~~~~~v~~i~~~~-~~~~~~~v~~  206 (497)
T 2bry_A          165 -IRQLQLLLLKVAL---------LLGVEIHWGVKFTGLQPPP-RKGSGWRAQL  206 (497)
T ss_dssp             -HHHHHHHHHHHHH---------HTTCEEEESCEEEEEECCC-STTCCBEEEE
T ss_pred             -HHHHHHHHHHHHH---------hCCCEEEeCCEEEEEEEec-CCCCEEEEEE
Confidence             1233344555543         4589999999999997210 1234455666

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.68  E-value=0.00014  Score=67.09  Aligned_cols=90  Identities=16%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|++.+  .+|+++++.+.+.        +.    ..+...+.+..++.+++++.++.+..
T Consensus       162 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~~--------~~----~~~~~~l~~~~~~~gv~i~~~~~v~~  227 (360)
T 3ab1_A          162 KGKRVVIVGGGDSALDWTVGLIKNA--ASVTLVHRGHEFQ--------GH----GKTAHEVERARANGTIDVYLETEVAS  227 (360)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTS--SEEEEECSSSSCS--------SC----SHHHHSSHHHHHHTSEEEESSEEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCCCC--------CC----HHHHHHHHHHhhcCceEEEcCcCHHH
Confidence            3579999999999999999999986  8999999876431        11    12334455556677899988865421


Q ss_pred             ---------EEecc--cc---eeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLS--EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~--~~---~~~yd~lIlATGs~~p~~  122 (334)
                               .+.+.  ++   .+++|.||+|+|. .|..
T Consensus       228 i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~-~p~~  265 (360)
T 3ab1_A          228 IEESNGVLTRVHLRSSDGSKWTVEADRLLILIGF-KSNL  265 (360)
T ss_dssp             EEEETTEEEEEEEEETTCCEEEEECSEEEECCCB-CCSC
T ss_pred             hccCCCceEEEEEEecCCCeEEEeCCEEEECCCC-CCCH
Confidence                     23332  33   3589999999997 4543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.67  E-value=0.00024  Score=64.32  Aligned_cols=87  Identities=20%  Similarity=0.207  Sum_probs=61.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.    ..+   ...+.+..+|+++.++.+..
T Consensus       151 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~----~~~---~~~l~~~~gv~i~~~~~v~~  213 (325)
T 2q7v_A          151 KGKKVVVIGGGDAAVEEGMFLTKFA--DEVTVIHRRDTLR--------AN----KVA---QARAFANPKMKFIWDTAVEE  213 (325)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTTTC--SEEEEECSSSSCC--------SC----HHH---HHHHHTCTTEEEECSEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeCCCcCC--------cc----hHH---HHHHHhcCCceEecCCceEE
Confidence            3579999999999999999999986  8999999876431        11    122   22334456999988876521


Q ss_pred             --------EEecc---cc---eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS---EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~---~~---~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.   ++   .+++|.||+|+|. .|..
T Consensus       214 i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~  251 (325)
T 2q7v_A          214 IQGADSVSGVKLRNLKTGEVSELATDGVFIFIGH-VPNT  251 (325)
T ss_dssp             EEESSSEEEEEEEETTTCCEEEEECSEEEECSCE-EESC
T ss_pred             EccCCcEEEEEEEECCCCcEEEEEcCEEEEccCC-CCCh
Confidence                    23332   23   3589999999998 4553

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.66  E-value=4.2e-05  Score=73.98  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=38.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      ..++|+|||||++|+++|..|.+.+ ..+|+|+|+++.+||.+..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g-~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESSSSSSGGGCE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEeCCCCCCCeeee
Confidence            4579999999999999999999985 3699999999999887653

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.66  E-value=0.00011  Score=60.82  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      +|+|||||.+|+++|..|++                    .|. +|+++++++.++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~--------------------~g~-~v~lie~~~~~~   37 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLAR--------------------AGL-KVLVLDGGRSKV   37 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEECSCCTT
T ss_pred             eEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCcc
Confidence            69999999999999999996                    565 699999987543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.65  E-value=3.4e-05  Score=73.36  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=31.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .+++|+||||||+|+++|..|++.|  ++|+|||+.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G--~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHD--VDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTT--CEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence            3479999999999999999999997  9999999875

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=97.64  E-value=4.9e-05  Score=72.13  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=34.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPF   57 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~g   57 (334)
                      ...+|+|||||++|+++|.+|++.+  . +|+|+|+.+.++
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~G--~~~V~vlE~~~~~~   43 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARRG--YTNVTVLDPYPVPS   43 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSCSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCC
Confidence            3579999999999999999999997  8 999999987654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.63  E-value=6.5e-05  Score=75.48  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=38.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ...++|+|||||++|++||..|.+.|  ++|+|+|+.+.+||.+.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~  147 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVA  147 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTCC
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccc
Confidence            45689999999999999999999997  99999999999988653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.62  E-value=0.00022  Score=70.60  Aligned_cols=91  Identities=12%  Similarity=0.129  Sum_probs=64.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+++++. .+        .|.+  ..++...+.+.+++.||+++++..+..
T Consensus       285 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~-~~--------l~~~--d~~~~~~~~~~l~~~gv~i~~~~~v~~  351 (598)
T 2x8g_A          285 FPGKTLVIGASYVALECAGFLASLG--GDVTVMVRS-IL--------LRGF--DQQMAEKVGDYMENHGVKFAKLCVPDE  351 (598)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CS--------STTS--CHHHHHHHHHHHHHTTCEEEETEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEECC-cC--------cCcC--CHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence            3568999999999999999999997  899999986 21        1322  235566677778888999988753211


Q ss_pred             ---------------E--Ee--cccc-ee--ccCeEEEeccCCCCCC
Q 019876           98 ---------------S--VS--LSEL-RQ--LYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------------~--v~--~~~~-~~--~yd~lIlATGs~~p~~  122 (334)
                                     .  +.  ..++ +.  ++|.||+|+|. .|..
T Consensus       352 v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~-~p~~  397 (598)
T 2x8g_A          352 IKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR-EPQL  397 (598)
T ss_dssp             EEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCE-EECG
T ss_pred             EEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCC-cccc
Confidence                           1  11  1222 23  49999999998 4654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.62  E-value=0.00033  Score=62.77  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +    ..++   +.+.+++.|++++.++.+..
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g--~~v~~~~~~~~~~--------~----~~~~---~~~~~~~~gv~~~~~~~v~~  208 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANIC--SKIYLIHRRDEFR--------A----APST---VEKVKKNEKIELITSASVDE  208 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTS--SEEEEECSSSSCB--------S----CHHH---HHHHHHCTTEEEECSCEEEE
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEeCCCCC--------C----CHHH---HHHHHhcCCeEEEeCcEEEE
Confidence            4579999999999999999999986  8999999876531        1    1122   23444678999998876521


Q ss_pred             ---------EEecc--cc---eeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLS--EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~--~~---~~~yd~lIlATGs~~p~~  122 (334)
                               .+.+.  ++   .+++|.||+|+|. .|..
T Consensus       209 i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~-~p~~  246 (315)
T 3r9u_A          209 VYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL-NVRN  246 (315)
T ss_dssp             EEEETTEEEEEEEECTTSCEEEECCSCEEECSCE-EECC
T ss_pred             EEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC-CCCc
Confidence                     13332  33   4689999999998 4654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.61  E-value=3.5e-05  Score=70.89  Aligned_cols=36  Identities=28%  Similarity=0.324  Sum_probs=32.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcC----CCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~----~~~~v~vie~~~~   55 (334)
                      |+|+|||||.+|+++|.+|++.+    |+.+|+|+|+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            58999999999999999999986    5689999999854

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.61  E-value=0.00031  Score=64.04  Aligned_cols=87  Identities=18%  Similarity=0.255  Sum_probs=61.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.    +.+.   .+++++.||+++.+..+..
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~V~l~~~~~~~~--------~~----~~~~---~~~~~~~gV~v~~~~~v~~  216 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFA--RSVTLVHRRDEFR--------AS----KIML---DRARNNDKIRFLTNHTVVA  216 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTC--SEEEEECSSSSCS--------SC----TTHH---HHHHHCTTEEEECSEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhC--CeEEEEEcCCcCC--------cc----HHHH---HHHhccCCcEEEeCceeEE
Confidence            4689999999999999999999986  8999999876431        11    1111   2334567999998876521


Q ss_pred             --------EEecc---c---ceeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS---E---LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~---~---~~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.   +   ..+++|.||+|+|. .|..
T Consensus       217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~  254 (335)
T 2a87_A          217 VDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGH-EPRS  254 (335)
T ss_dssp             EECSSSCCEEEEEEETTSCCEEECCSCEEECSCE-EECC
T ss_pred             EecCCcEeEEEEEEcCCCceEEeecCEEEEccCC-ccCh
Confidence                    13332   1   24589999999998 4654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.61  E-value=0.00035  Score=62.75  Aligned_cols=87  Identities=15%  Similarity=0.130  Sum_probs=60.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        .    ...+   ...+.++.||+++.+..+..
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~----~~~~---~~~l~~~~gv~v~~~~~v~~  204 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANIC--KKVYLIHRRDGFR--------C----APIT---LEHAKNNDKIEFLTPYVVEE  204 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTS--SEEEEECSSSSCC--------S----CHHH---HHHHHTCTTEEEETTEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeeCCccC--------C----CHHH---HHHHhhCCCeEEEeCCEEEE
Confidence            3589999999999999999999986  8999999876431        1    1122   22233457899988765421


Q ss_pred             ---------EEecc---cc---eeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLS---EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~---~~---~~~yd~lIlATGs~~p~~  122 (334)
                               .+.+.   ++   .+++|.||+|+|. .|..
T Consensus       205 i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~  243 (311)
T 2q0l_A          205 IKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGY-DVNN  243 (311)
T ss_dssp             EEEETTEEEEEEEEETTTCCEEEEECSEEEECSCE-EECC
T ss_pred             EECCCCcEeEEEEEecCCCceEEEecCEEEEEecC-ccCh
Confidence                     13333   23   3589999999998 4654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.60  E-value=0.0003  Score=63.12  Aligned_cols=86  Identities=13%  Similarity=0.172  Sum_probs=60.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhc-CCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~   96 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        .    ...    +.+.+.+ .+++++.+..+.
T Consensus       143 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~----~~~----~~~~l~~~~gv~v~~~~~v~  204 (310)
T 1fl2_A          143 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK--------A----DQV----LQDKLRSLKNVDIILNAQTT  204 (310)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTB--SEEEEECSSSSCC--------S----CHH----HHHHHHTCTTEEEESSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhC--CEEEEEEeCcccC--------c----cHH----HHHHHhhCCCeEEecCCceE
Confidence            3579999999999999999999986  8999999876531        1    111    2233444 689998886652


Q ss_pred             e---------EEeccc---c---eeccCeEEEeccCCCCCC
Q 019876           97 S---------SVSLSE---L---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~~~---~---~~~yd~lIlATGs~~p~~  122 (334)
                      .         .+.+.+   +   .+.+|.||+|+|. .|..
T Consensus       205 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~  244 (310)
T 1fl2_A          205 EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL-LPNT  244 (310)
T ss_dssp             EEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE-EESC
T ss_pred             EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCC-ccCc
Confidence            1         133322   2   3579999999998 4553

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.60  E-value=0.00035  Score=63.37  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=61.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.    ..+   ..+.+++.+|+++.+..+..
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~~--------~~----~~~---~~~~~~~~gv~i~~~~~v~~  220 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDAFR--------AS----KIM---QQRALSNPKIDVIWNSSVVE  220 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------SC----HHH---HHHHHTCTTEEEECSEEEEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcC--CeEEEEecCCcCC--------cc----HHH---HHHHHhCCCeeEecCCceEE
Confidence            4679999999999999999999986  8999999876431        11    111   12345678999988766521


Q ss_pred             -----------EEecc---c---ceeccCeEEEeccCCCCCC
Q 019876           98 -----------SVSLS---E---LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -----------~v~~~---~---~~~~yd~lIlATGs~~p~~  122 (334)
                                 .+.+.   +   ..+++|.||+|+|. .|..
T Consensus       221 i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~  261 (333)
T 1vdc_A          221 AYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH-EPAT  261 (333)
T ss_dssp             EEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCE-EESC
T ss_pred             EeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCC-ccch
Confidence                       13332   1   23589999999998 4554

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.57  E-value=0.00024  Score=71.74  Aligned_cols=94  Identities=15%  Similarity=0.051  Sum_probs=66.4

Q ss_pred             CCCCeEEEEC--CchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           17 SNPLRVCVVG--SGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        17 ~~~~~vvIIG--aG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ...++|+|||  +|+.|+.+|..|.+.+  .+|+++++.+.+.....         .......+.+.+++.||+++.++.
T Consensus       521 ~~g~~VvViG~ggG~~g~e~A~~L~~~g--~~Vtlv~~~~~l~~~~~---------~~~~~~~l~~~l~~~GV~i~~~~~  589 (690)
T 3k30_A          521 PDGKKVVVYDDDHYYLGGVVAELLAQKG--YEVSIVTPGAQVSSWTN---------NTFEVNRIQRRLIENGVARVTDHA  589 (690)
T ss_dssp             CSSSEEEEEECSCSSHHHHHHHHHHHTT--CEEEEEESSSSTTGGGG---------GGTCHHHHHHHHHHTTCEEEESEE
T ss_pred             CCCCEEEEEcCCCCccHHHHHHHHHhCC--CeeEEEecccccccccc---------cchhHHHHHHHHHHCCCEEEcCcE
Confidence            3457899999  9999999999999997  89999998765432111         112234556667788999999977


Q ss_pred             Ece------EEec---ccc-eeccCeEEEeccCCCCCC
Q 019876           95 LGS------SVSL---SEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        95 v~~------~v~~---~~~-~~~yd~lIlATGs~~p~~  122 (334)
                      +..      .+..   .+. .+.+|.||+|+|. .|..
T Consensus       590 V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~-~p~~  626 (690)
T 3k30_A          590 VVAVGAGGVTVRDTYASIERELECDAVVMVTAR-LPRE  626 (690)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECSEEEEESCE-EECC
T ss_pred             EEEEECCeEEEEEccCCeEEEEECCEEEECCCC-CCCh
Confidence            631      1221   122 3589999999998 4543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.56  E-value=9.1e-05  Score=76.29  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=38.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ...++|+|||||++|++||..|.+.|  ++|+|||+.+.+||.+
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g--~~v~v~E~~~~~GG~~  317 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV  317 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCcCCCce
Confidence            35689999999999999999999997  9999999999998865

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.55  E-value=0.00031  Score=67.43  Aligned_cols=91  Identities=21%  Similarity=0.206  Sum_probs=62.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        |.+ ...++...+.+.++   |+++.+..+..
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~d~~~~~~l~~~l~---v~i~~~~~v~~  236 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMG--VQTHIIEMLDRAL--------ITL-EDQDIVNTLLSILK---LNIKFNSPVTE  236 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TTS-CCHHHHHHHHHHHC---CCEECSCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEeCCcCC--------CCC-CCHHHHHHHHhcCE---EEEEECCEEEE
Confidence            4689999999999999999999997  8999999877531        221 02345555555554   77776654311


Q ss_pred             ---------EEecc--cc---eeccCeEEEeccCCCCCCC
Q 019876           98 ---------SVSLS--EL---RQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 ---------~v~~~--~~---~~~yd~lIlATGs~~p~~~  123 (334)
                               .+.+.  ++   .+++|.||+|+|. .|...
T Consensus       237 i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~-~p~~~  275 (466)
T 3l8k_A          237 VKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGR-RPVIP  275 (466)
T ss_dssp             EEEEETTEEEEEECCTTSCCEEEEESCEEECCCE-EECCC
T ss_pred             EEEcCCCcEEEEEEecCCceEEEEcCEEEECcCC-Ccccc
Confidence                     13333  22   4689999999998 46543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.51  E-value=0.00011  Score=67.73  Aligned_cols=36  Identities=31%  Similarity=0.331  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||||++|+++|..|++.+  .+|+|+|+...
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G--~~V~vle~~~~   40 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKG--YSVHILARDLP   40 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccCC
Confidence            4579999999999999999999987  99999998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.50  E-value=0.00041  Score=62.61  Aligned_cols=85  Identities=16%  Similarity=0.174  Sum_probs=60.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      .++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +    ...+    .+.+.+.|++++.++.+.. 
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g--~~V~~i~~~~~~~--------~----~~~l----~~~l~~~gv~i~~~~~v~~i  216 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYV--KNVTIIEYMPKYM--------C----ENAY----VQEIKKRNIPYIMNAQVTEI  216 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTB--SEEEEECSSSSCC--------S----CHHH----HHHHHHTTCCEECSEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhC--CcEEEEEcCCccC--------C----CHHH----HHHHhcCCcEEEcCCeEEEE
Confidence            579999999999999999999986  8999999876431        1    1222    2333467899988866521 


Q ss_pred             --------EEecc---cc---eeccCeEEEeccCCCCCC
Q 019876           98 --------SVSLS---EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 --------~v~~~---~~---~~~yd~lIlATGs~~p~~  122 (334)
                              .+.+.   ++   .+.+|.||+|+|. .|..
T Consensus       217 ~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~  254 (319)
T 3cty_A          217 VGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGL-IPQT  254 (319)
T ss_dssp             EESSSSEEEEEEEETTTCCEEEECCSEEEECCCE-EECC
T ss_pred             ecCCceEEEEEEEEcCCCceEEEecCEEEEeeCC-ccCh
Confidence                    13332   23   3589999999998 4554

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.50  E-value=0.00049  Score=61.76  Aligned_cols=86  Identities=20%  Similarity=0.156  Sum_probs=62.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.    ..   ...+..+..||+++.+..+..
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g--~~v~~~~~~~~~~--------~~----~~---~~~~~~~~~gv~~~~~~~v~~  215 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYS--TKVYLIHRRDTFK--------AQ----PI---YVETVKKKPNVEFVLNSVVKE  215 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHS--SEEEEECSSSSCC--------SC----HH---HHHHHHTCTTEEEECSEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhC--CeEEEEEeCCCCC--------cC----HH---HHHHHHhCCCcEEEeCCEEEE
Confidence            4579999999999999999999987  8999999876531        21    12   233444556999998876521


Q ss_pred             --------EEeccc---c---eeccCeEEEeccCCCCC
Q 019876           98 --------SVSLSE---L---RQLYHVVVLAYGAESDR  121 (334)
Q Consensus        98 --------~v~~~~---~---~~~yd~lIlATGs~~p~  121 (334)
                              .+.+.+   +   .+++|.||+|+|. .|.
T Consensus       216 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~-~p~  252 (323)
T 3f8d_A          216 IKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGF-DPP  252 (323)
T ss_dssp             EEESSSEEEEEEEETTTCCEEEEECSEEEECCCE-ECC
T ss_pred             EeccCceeEEEEEECCCCceEEEEcCEEEEEECC-CCC
Confidence                    133332   3   3589999999998 454

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.50  E-value=9e-05  Score=70.55  Aligned_cols=42  Identities=21%  Similarity=0.131  Sum_probs=37.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ..++|+|||+|++|+++|..|.+.|  .+|+|+|+++.+||.+.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~   46 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNG--KKVLHMDRNPYYGGESS   46 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCcccccc
Confidence            3579999999999999999999987  99999999999888753

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.48  E-value=9.3e-05  Score=69.17  Aligned_cols=36  Identities=31%  Similarity=0.406  Sum_probs=32.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||||++|+++|..|++.|  .+|+|+|+.+.+
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~   39 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERG--HRVLVLERHTFF   39 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence            369999999999999999999997  999999998654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.47  E-value=0.0001  Score=70.81  Aligned_cols=42  Identities=26%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~   61 (334)
                      ..++|+|||||++|+++|..|.+.+  . +|+|+|+.+.+||.+.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g--~~~v~~~e~~~~~gg~~~   45 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMH   45 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcC--CCceEEEeCCCCCCCcee
Confidence            3579999999999999999999987  7 8999999998888653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.45  E-value=0.0001  Score=71.74  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=34.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..+|+|||+|++|++||..|++.+  .+|+|+|+.+.+||
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G--~~V~vlEk~~~~GG   78 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAG--ADVLVLERTSGWGG   78 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence            468999999999999999999997  99999999987654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.43  E-value=0.00014  Score=71.02  Aligned_cols=36  Identities=22%  Similarity=0.461  Sum_probs=32.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhh---cCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~---~~~~~~v~vie~~~~   55 (334)
                      +.++|+|||||++|+++|..|++   .|  .+|+|||+.+.
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQ--ANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSS--CEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCC--CEEEEECCCCC
Confidence            35799999999999999999999   65  99999999653

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.40  E-value=0.00016  Score=70.92  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcC-CCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~-~~~~v~vie~~~   54 (334)
                      ..++|+|||||++|+++|..|++.. .+.+|+|||+.+
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4679999999999999999999932 249999999864

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.39  E-value=0.00016  Score=70.56  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhh------------cCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLK------------AHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~------------~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||||+||+.+|..|++            .+  .+|+|||+.+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G--~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPK--LNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCS--CEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCC--CeEEEEeCCCC
Confidence            35799999999999999999999            55  99999998754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.38  E-value=0.00037  Score=61.86  Aligned_cols=83  Identities=6%  Similarity=-0.049  Sum_probs=59.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-   96 (334)
                      ..++++|||+|+.|+.+|..|.+.+   +|+++.+.+..       .      .    ..+.+.+.+.||+++. ..+. 
T Consensus       140 ~~~~v~vvG~G~~~~e~a~~l~~~g---~v~~v~~~~~~-------~------~----~~~~~~l~~~gv~i~~-~~v~~  198 (297)
T 3fbs_A          140 DQGKIGVIAASPMAIHHALMLPDWG---ETTFFTNGIVE-------P------D----ADQHALLAARGVRVET-TRIRE  198 (297)
T ss_dssp             TTCEEEEECCSTTHHHHHHHGGGTS---EEEEECTTTCC-------C------C----HHHHHHHHHTTCEEEC-SCEEE
T ss_pred             cCCEEEEEecCccHHHHHHHhhhcC---cEEEEECCCCC-------C------C----HHHHHHHHHCCcEEEc-ceeee
Confidence            4689999999999999999999883   99999876530       1      1    1244566778999885 3331 


Q ss_pred             ----eEEecccc-eeccCeEEEeccCCCCCC
Q 019876           97 ----SSVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ----~~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                          ..+.+.++ .+++|.||+|+|. .|..
T Consensus       199 i~~~~~v~~~~g~~~~~D~vi~a~G~-~p~~  228 (297)
T 3fbs_A          199 IAGHADVVLADGRSIALAGLFTQPKL-RITV  228 (297)
T ss_dssp             EETTEEEEETTSCEEEESEEEECCEE-ECCC
T ss_pred             eecCCeEEeCCCCEEEEEEEEEccCc-ccCc
Confidence                13444444 3589999999998 4543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.38  E-value=0.00076  Score=60.82  Aligned_cols=85  Identities=15%  Similarity=0.126  Sum_probs=61.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      .++++|||+|+.|+.+|..|++.+  .+|+++++.+.+.        +.    ...    .+.+++.||+++.+..+.. 
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~--~~v~~~~~~~~~~--------~~----~~~----~~~l~~~gv~~~~~~~v~~i  215 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIA--KEVSIIHRRDKFR--------AH----EHS----VENLHASKVNVLTPFVPAEL  215 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTB--SEEEEECSSSSCS--------SC----HHH----HHHHHHSSCEEETTEEEEEE
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhC--CeEEEEEecCcCC--------cc----HHH----HHHHhcCCeEEEeCceeeEE
Confidence            579999999999999999999986  8999999876431        11    111    2235677999998876531 


Q ss_pred             -------EEeccc------ceeccCeEEEeccCCCCCC
Q 019876           98 -------SVSLSE------LRQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 -------~v~~~~------~~~~yd~lIlATGs~~p~~  122 (334)
                             .+.+.+      ..+.+|.||+|+|. .|..
T Consensus       216 ~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~-~p~~  252 (332)
T 3lzw_A          216 IGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGF-VSSL  252 (332)
T ss_dssp             ECSSSCCEEEEEETTSCCEEEEECSEEEECCCE-ECCC
T ss_pred             ecCCceEEEEEEecCCCceEEEECCEEEEeecc-CCCc
Confidence                   133333      23589999999998 4544

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.35  E-value=0.00086  Score=63.82  Aligned_cols=79  Identities=11%  Similarity=-0.042  Sum_probs=54.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCe-EEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe-EE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV-TL   95 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~-v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~-~v   95 (334)
                      ..++|+|||+|++|+.+|..|.+.+  .+ |+++++.+..                         +...+|.+.... .+
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l~~~~--~~~V~l~~r~~~~-------------------------l~~~~i~~~~~v~~~  263 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHLTPVA--KHPIYQSLLGGGD-------------------------IQNESLQQVPEITKF  263 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECTTCCS-------------------------CBCSSEEEECCEEEE
T ss_pred             CCCEEEEEccCcCHHHHHHHHHHHh--CCcEEEEeCCCCc-------------------------CCCCCeEEecCeEEE
Confidence            4689999999999999999999987  77 9999987543                         122334332111 11


Q ss_pred             ---ceEEecccce--eccCeEEEeccCCCCCCCC
Q 019876           96 ---GSSVSLSELR--QLYHVVVLAYGAESDRALG  124 (334)
Q Consensus        96 ---~~~v~~~~~~--~~yd~lIlATGs~~p~~~~  124 (334)
                         +..+.+.+++  ..+|.||+|||. .|..+-
T Consensus       264 ~~~~~~v~~~dG~~~~~~D~vi~atG~-~~~~~~  296 (447)
T 2gv8_A          264 DPTTREIYLKGGKVLSNIDRVIYCTGY-LYSVPF  296 (447)
T ss_dssp             ETTTTEEEETTTEEECCCSEEEECCCB-CCCCCC
T ss_pred             ecCCCEEEECCCCEeccCCEEEECCCC-CcCCCC
Confidence               1234555554  479999999998 465433

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.32  E-value=0.00085  Score=60.18  Aligned_cols=36  Identities=28%  Similarity=0.248  Sum_probs=32.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++++|||+|+.|+.+|..|++.+  .+|+|+++.+.
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G--~~Vt~v~~~~~  186 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYG--SKVIILHRRDA  186 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhC--Ceeeeeccccc
Confidence            3579999999999999999999997  99999997643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.31  E-value=0.00017  Score=73.56  Aligned_cols=39  Identities=23%  Similarity=0.376  Sum_probs=35.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ..++|+|||||++|+++|..|.+.|  .+|+|+|+.+.+||
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFG--IKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEecccceec
Confidence            4579999999999999999999997  99999999888776

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.31  E-value=0.00014  Score=71.71  Aligned_cols=40  Identities=20%  Similarity=0.211  Sum_probs=35.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      ....+|+|||||++|+.+|..|++.|  .+|+|+|+.+..+|
T Consensus        16 ~~~~DVvVIGgGi~Gl~~A~~La~~G--~~V~LlEk~d~~~G   55 (561)
T 3da1_A           16 EKQLDLLVIGGGITGAGIALDAQVRG--IQTGLVEMNDFASG   55 (561)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSTTCS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCC
Confidence            34689999999999999999999997  99999999865443

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.31  E-value=0.00023  Score=66.52  Aligned_cols=34  Identities=35%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +++|+|||||+||+.||..|++.|  .+|+|+|+++
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G--~~V~liE~~~   34 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLG--VPVRLFEMRP   34 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCC--CcEEEEeccC
Confidence            368999999999999999999997  9999999876

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.30  E-value=0.00017  Score=70.71  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=32.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      .++|+||||||+|+++|..|++.|  .+|+|||+.+.+
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G--~~V~vlEr~~~~   61 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQ--VGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCC
Confidence            368999999999999999999997  999999998654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.29  E-value=0.00017  Score=70.77  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=33.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      ...+|+|||||+||++||..|++ +  .+|+|+|+.+..+
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G--~~V~vlEk~~~~~   43 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVTE   43 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-T--SCEEEECSSCTTC
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-C--CcEEEEECCCCCC
Confidence            34799999999999999999999 7  9999999987654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.27  E-value=0.00095  Score=64.00  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=54.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE-E-
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT-L-   95 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~-v-   95 (334)
                      ..++|+|||+|++|+.+|..|.+.+  .+|+++++.+.+.+..   . |                  .+|+++.... + 
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l~~~g--~~V~li~~~~~~~~~~---~-~------------------~~V~~~~~V~~i~  251 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQCYKYG--AKKLISCYRTAPMGYK---W-P------------------ENWDERPNLVRVD  251 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTT--CSEEEEECSSCCCCCC---C-C------------------TTEEECSCEEEEC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHHhC--CeEEEEEECCCCCCCC---C-C------------------CceEEcCCeEEEe
Confidence            4689999999999999999999997  8999999876532110   0 1                  2444431110 1 


Q ss_pred             ceEEecccce-eccCeEEEeccCCCCCCC
Q 019876           96 GSSVSLSELR-QLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        96 ~~~v~~~~~~-~~yd~lIlATGs~~p~~~  123 (334)
                      +..+.+.+++ +.+|.||+|||. .|..+
T Consensus       252 ~~~V~~~dG~~i~~D~Vi~atG~-~p~~~  279 (464)
T 2xve_A          252 TENAYFADGSSEKVDAIILCTGY-IHHFP  279 (464)
T ss_dssp             SSEEEETTSCEEECSEEEECCCB-CCCCT
T ss_pred             CCEEEECCCCEEeCCEEEECCCC-CCCCC
Confidence            1234444443 589999999998 46543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.27  E-value=0.00091  Score=67.21  Aligned_cols=95  Identities=16%  Similarity=0.145  Sum_probs=60.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCC-----------------------------------CeEEEEcCCCCCccccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQE-----------------------------------AQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~-----------------------------------~~v~vie~~~~~gg~~~   61 (334)
                      ...++|+|||+|+.|+.+|..|.+.+..                                   .+|+++++.+..-+   
T Consensus       492 ~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~---  568 (671)
T 1ps9_A          492 PVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPG---  568 (671)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTT---
T ss_pred             CCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhc---
Confidence            3468999999999999999999987511                                   24455554332100   


Q ss_pred             cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce----EEec-ccc---eeccCeEEEeccCCCCC
Q 019876           62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS----SVSL-SEL---RQLYHVVVLAYGAESDR  121 (334)
Q Consensus        62 ~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~----~v~~-~~~---~~~yd~lIlATGs~~p~  121 (334)
                          ..  ........+.+.+++.||+++.++.+..    .+.+ .++   .+++|.||+|+|. .|.
T Consensus       569 ----~~--l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~-~p~  629 (671)
T 1ps9_A          569 ----QG--LGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ-EPN  629 (671)
T ss_dssp             ----TT--SCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE-EEC
T ss_pred             ----cc--cccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCc-ccc
Confidence                00  0112333455667788999999876531    1222 233   4689999999998 454

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.25  E-value=0.00019  Score=69.59  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhh---cCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~---~~~~~~v~vie~~~   54 (334)
                      .++|+|||||++|+++|..|++   .+  .+|+|||+.+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G--~~V~lvE~~~   38 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDR--IDVTLVESGN   38 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGG--SEEEEEEC--
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCC--CEEEEEecCC
Confidence            3699999999999999999999   76  9999999874

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.25  E-value=0.00024  Score=68.37  Aligned_cols=42  Identities=17%  Similarity=0.161  Sum_probs=37.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ..++|+|||+|.+|+.+|..|.+.|  .+|+++|+++.+||.+.
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g--~~v~~~e~~~~~Gg~~~   60 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYG--KKILVLDRNPYYGGETA   60 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeccCCCCCCcc
Confidence            4579999999999999999999997  99999999998888653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.23  E-value=0.0013  Score=64.29  Aligned_cols=37  Identities=22%  Similarity=0.305  Sum_probs=33.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...++|+|||+|..|+.+|..|++.+  .+|+++++.+.
T Consensus       176 ~~~krV~VIG~G~sgve~a~~l~~~~--~~Vtv~~r~~~  212 (540)
T 3gwf_A          176 LAGRRVGVIGTGSTGQQVITSLAPEV--EHLTVFVRTPQ  212 (540)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHTTTC--SEEEEEESSCC
T ss_pred             cccceEEEECCCchHHHHHHHHHhhC--CEEEEEECCCC
Confidence            35689999999999999999999986  89999999865

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.22  E-value=0.00025  Score=68.76  Aligned_cols=36  Identities=17%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||||++|+++|..|++.|  .+|+|+|+.+..
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G--~~V~llE~~~~~   38 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRG--LSVLMLEAQDLA   38 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCC--CCEEEEECCCCC
Confidence            469999999999999999999997  999999997643

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.20  E-value=0.0014  Score=59.00  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||||+.|+.+|..|++.+  .+|+|+++.+.
T Consensus       144 ~~k~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~  179 (312)
T 4gcm_A          144 KNKRLFVIGGGDSAVEEGTFLTKFA--DKVTIVHRRDE  179 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTTTC--SEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEecccc
Confidence            3579999999999999999999987  89999998765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.18  E-value=0.0015  Score=63.62  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=60.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhc-CCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~   96 (334)
                      ..++|+|||+|+.|+.+|..|++.+  .+|+++++.+.+.        ++        ..+.+.+.+ .||+++.+..+.
T Consensus       354 ~~k~V~ViGgG~~g~E~A~~L~~~g--~~Vtlv~~~~~l~--------~~--------~~l~~~l~~~~gV~v~~~~~v~  415 (521)
T 1hyu_A          354 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK--------AD--------QVLQDKVRSLKNVDIILNAQTT  415 (521)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHHHHB--SEEEEECSSSSCC--------SC--------HHHHHHHTTCTTEEEECSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhC--CEEEEEEeCcccC--------cC--------HHHHHHHhcCCCcEEEeCCEEE
Confidence            3579999999999999999999987  8999999876531        11        123344455 589998886652


Q ss_pred             e---------EEeccc---c---eeccCeEEEeccCCCCCC
Q 019876           97 S---------SVSLSE---L---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ~---------~v~~~~---~---~~~yd~lIlATGs~~p~~  122 (334)
                      .         .+.+.+   +   .+.+|.||+|+|. .|..
T Consensus       416 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~-~pn~  455 (521)
T 1hyu_A          416 EVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL-LPNT  455 (521)
T ss_dssp             EEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE-EESC
T ss_pred             EEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC-CCCc
Confidence            1         122221   2   3579999999997 4554

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.18  E-value=0.00015  Score=72.79  Aligned_cols=35  Identities=37%  Similarity=0.533  Sum_probs=31.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhh-----cCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLK-----AHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~-----~~~~~~v~vie~~~~   55 (334)
                      ..+|+||||||+|+++|..|++     .|  ++|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~G--i~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCC--CCEEEEeCCCC
Confidence            4689999999999999999999     76  99999998753

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.18  E-value=0.00027  Score=70.73  Aligned_cols=36  Identities=28%  Similarity=0.490  Sum_probs=32.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhh-cCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~-~~~~~~v~vie~~~~~   56 (334)
                      ..+|+||||||+|+++|..|++ .|  ++|+|||+.+.+
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G--~~V~viEr~~~~   68 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPD--IRTCIVEQKEGP   68 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTT--SCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCC--CCEEEEeCCCCC
Confidence            4689999999999999999999 87  999999997653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.18  E-value=0.00031  Score=70.02  Aligned_cols=40  Identities=33%  Similarity=0.382  Sum_probs=35.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      .++|+|||+|++|+.+|..|++.+  ++|+|+|+.+..+|..
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G--~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCSSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCC--CcEEEEeccCCCCCcc
Confidence            468999999999999999999987  9999999998777643

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.16  E-value=0.00062  Score=64.45  Aligned_cols=98  Identities=9%  Similarity=0.115  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc----------------------
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ----------------------  216 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~----------------------  216 (334)
                      ..+|+|||||..|+-+|..|++                    .|. +|+|+++.+.+.                      
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~--------------------~G~-~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~   85 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGK--------------------RGR-RVLVIDHARAPGEKIRISGGGRCNFTNIHASPRN   85 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCCCceeEEcCCCceeccCCCCCHHH
Confidence            3589999999999999999996                    576 599999876421                      


Q ss_pred             -------------cCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEE
Q 019876          217 -------------AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL  283 (334)
Q Consensus       217 -------------~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  283 (334)
                                   ..|....+.+.++..|+.+........+....         ...+.+.|.+.+.         +.||
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~---------~~~l~~~L~~~l~---------~~Gv  147 (417)
T 3v76_A           86 FLSGNPHFCKSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHS---------AKDIIRMLMAEMK---------EAGV  147 (417)
T ss_dssp             EEESSTTTTHHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEESSC---------HHHHHHHHHHHHH---------HHTC
T ss_pred             HhhcCHHHHHHHHHhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCC---------HHHHHHHHHHHHH---------HCCC
Confidence                         11233455556666676665543322111100         1122334444442         4589


Q ss_pred             EEEeccccceee
Q 019876          284 HFVFFRKPDSFL  295 (334)
Q Consensus       284 ~~~~~~~~~~i~  295 (334)
                      ++++++.+++|.
T Consensus       148 ~i~~~~~V~~i~  159 (417)
T 3v76_A          148 QLRLETSIGEVE  159 (417)
T ss_dssp             EEECSCCEEEEE
T ss_pred             EEEECCEEEEEE
Confidence            999999999997

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.15  E-value=0.0013  Score=58.72  Aligned_cols=109  Identities=10%  Similarity=0.127  Sum_probs=62.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC-CcceEEEEeecCccccCCCH-----------HHHHHH
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS-SIRKVYLVGRRGPVQAACTA-----------KELREI  227 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vtiv~r~~~~~~~~~~-----------~~~~~~  227 (334)
                      ..|+|||||.+|+.+|..|++                    . |. +|+|+++...+......           ....+.
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~--------------------~~G~-~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~   98 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISK--------------------NPNV-QVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLF   98 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--------------------STTS-CEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHH
T ss_pred             cCEEEECccHHHHHHHHHHHH--------------------cCCC-eEEEEECCCCCCCceecCCcchHHHHcCcHHHHH
Confidence            479999999999999999996                    5 65 59999998654211000           001122


Q ss_pred             HcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEE
Q 019876          228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV  307 (334)
Q Consensus       228 l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v  307 (334)
                      +...|+.+.......   ..        .....+...+.+.+.        ...||++++++.+++|.  . +++++.+|
T Consensus        99 l~~~G~~~~~~~~~~---~~--------~~~~~~~~~l~~~~~--------~~~gv~i~~~~~V~~i~--~-~~~~v~gv  156 (284)
T 1rp0_A           99 LDEIGVAYDEQDTYV---VV--------KHAALFTSTIMSKLL--------ARPNVKLFNAVAAEDLI--V-KGNRVGGV  156 (284)
T ss_dssp             HHHHTCCCEECSSEE---EE--------SCHHHHHHHHHHHHH--------TSTTEEEEETEEEEEEE--E-ETTEEEEE
T ss_pred             HHHcCCCcccCCCEE---Ee--------cCHHHHHHHHHHHHH--------hcCCCEEEcCcEEEEEE--e-cCCeEEEE
Confidence            222344332211000   00        001112223333332        24699999999999997  4 35678888


Q ss_pred             EEEE
Q 019876          308 HFEK  311 (334)
Q Consensus       308 ~~~~  311 (334)
                      .+..
T Consensus       157 ~~~~  160 (284)
T 1rp0_A          157 VTNW  160 (284)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.14  E-value=0.0015  Score=62.52  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~   55 (334)
                      ...++|+|||+|..|+.+|..+.+.+  . +|+++++.+.
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtiv~r~~~  299 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQG--ATSVKCLYRRDR  299 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTT--CSEEEEECSSCS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcC--CCEEEEEEeCCc
Confidence            35689999999999999999999986  5 5999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.12  E-value=0.00089  Score=67.95  Aligned_cols=92  Identities=15%  Similarity=0.124  Sum_probs=63.1

Q ss_pred             CCCeEEEEC--CchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           18 NPLRVCVVG--SGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        18 ~~~~vvIIG--aG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ..++|+|||  +|+.|+.+|..|++.+  .+|+++++.+ +.....  . +.     . ...+.+.+++.||+++.++.+
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G--~~Vtlv~~~~-l~~~~~--~-~~-----~-~~~~~~~l~~~GV~i~~~~~v  594 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVH-LANYMH--F-TL-----E-YPNMMRRLHELHVEELGDHFC  594 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSC-TTHHHH--H-TT-----C-HHHHHHHHHHTTCEEECSEEE
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcC--CEEEEEeccc-cccccc--c-cc-----c-HHHHHHHHHhCCCEEEcCcEE
Confidence            467999999  9999999999999997  8999999876 421110  1 11     1 234455667789999988765


Q ss_pred             ce----EEec----cc--ce------------------eccCeEEEeccCCCCCC
Q 019876           96 GS----SVSL----SE--LR------------------QLYHVVVLAYGAESDRA  122 (334)
Q Consensus        96 ~~----~v~~----~~--~~------------------~~yd~lIlATGs~~p~~  122 (334)
                      ..    .+.+    .+  ..                  +++|.||+|+|. .|..
T Consensus       595 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~-~p~~  648 (729)
T 1o94_A          595 SRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR-HSEC  648 (729)
T ss_dssp             EEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE-EECC
T ss_pred             EEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCC-CCCh
Confidence            21    1111    11  11                  689999999998 4543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.11  E-value=0.00034  Score=69.30  Aligned_cols=36  Identities=17%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||||+||++||..|++.+  .+|+|+|+.+..
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G--~~V~vlEK~~~~   42 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence            468999999999999999999987  999999998654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.10  E-value=0.0004  Score=68.09  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..+|+|||+|.+|+-+|..|++                    .|. +|+|+++...
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~--------------------~G~-kV~VlEr~~~  141 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQ--------------------MGF-NPIIVERGKE  141 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHH--------------------TTC-CCEEECSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--------------------CCC-eEEEEEccCc
Confidence            4689999999999999999996                    676 5999998754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.06  E-value=0.0022  Score=62.85  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||+|+.|+.+|..|++.+  .+|++|++.+.
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~--~~Vtv~~r~~~  225 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQA--EQLFVFQRSAN  225 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHB--SEEEEEESSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhC--CEEEEEECCCC
Confidence            5689999999999999999999987  89999999875

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.06  E-value=0.00047  Score=68.02  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=33.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..++|+|||||.+|+++|..|++.|  .+|+|+|+.+..
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG--~~V~LlE~~~~~   67 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASG--IKTGLIEMQDFA   67 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence            4579999999999999999999997  999999998643

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.05  E-value=0.0032  Score=61.62  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=32.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||+|+.|+.+|..|++.+  .+|+||++.+.
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~--~~Vtv~~r~~~  219 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETA--KELYVFQRTPN  219 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTB--SEEEEEESSCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhC--CEEEEEEcCCC
Confidence            5689999999999999999999986  89999999875

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.04  E-value=0.00043  Score=68.92  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||||+||++||..|++.|  .+|+|+|+.+.
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G--~~V~vlEK~~~   52 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAG--FNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCG
T ss_pred             cCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence            469999999999999999999987  99999999754

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.03  E-value=0.00074  Score=64.39  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=29.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..|+|||||.+|+-+|..|++                    .|. +|+|+++.+.
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~--------------------~G~-~V~llEk~~~   60 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAE--------------------EGA-NVLLLDKGNK   60 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHH--------------------CCC-CEEEEECCCC
Confidence            479999999999999999996                    565 5999998753

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.00  E-value=0.0019  Score=62.66  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+|+|||||..|+-+|..|++                    .|. +|+|+++..
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~--------------------~G~-~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAM--------------------RGH-RVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--------------------TTC-CEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHh--------------------CCC-CEEEEccCC
Confidence            479999999999999999996                    676 599999986

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.98  E-value=0.0005  Score=68.92  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=32.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||||.||++||..|++.|  .+|+|+|+.+..
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G--~~V~vlEK~~~~   40 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVK   40 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGG
T ss_pred             cccEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence            468999999999999999999987  999999997643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.97  E-value=0.00093  Score=53.02  Aligned_cols=75  Identities=13%  Similarity=0.128  Sum_probs=49.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ...+|+|+|+|..|...|..|.+.+  ++|+++|+++.                  ....    +...++.++.+.....
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~------------------~~~~----~~~~g~~~i~gd~~~~   61 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRT------------------RVDE----LRERGVRAVLGNAANE   61 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHH------------------HHHH----HHHTTCEEEESCTTSH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHH------------------HHHH----HHHcCCCEEECCCCCH
Confidence            3568999999999999999999987  99999998631                  1111    2234666544322111


Q ss_pred             EEeccc-ceeccCeEEEeccC
Q 019876           98 SVSLSE-LRQLYHVVVLAYGA  117 (334)
Q Consensus        98 ~v~~~~-~~~~yd~lIlATGs  117 (334)
                      .+ +.. .-..+|.+|+|++.
T Consensus        62 ~~-l~~a~i~~ad~vi~~~~~   81 (140)
T 3fwz_A           62 EI-MQLAHLECAKWLILTIPN   81 (140)
T ss_dssp             HH-HHHTTGGGCSEEEECCSC
T ss_pred             HH-HHhcCcccCCEEEEECCC
Confidence            11 111 12378999999987

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.95  E-value=0.0015  Score=59.43  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||+|+.|+.+|..|.+.+   +|+++.+.+
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~~---~v~~v~~~~  195 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTVA---ETTWITQHE  195 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS---EEEEECSSC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhhC---CEEEEECCC
Confidence            4589999999999999999999985   699998763

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=96.93  E-value=0.00048  Score=65.43  Aligned_cols=35  Identities=23%  Similarity=0.182  Sum_probs=30.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||||++|+++|..|++.++ .+|+|+|++
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~-~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSG-GSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHC-SCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEccC
Confidence            34699999999999999999999852 699999993

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.92  E-value=0.00049  Score=69.31  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCC------CCeEEEEcCCC-CC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQ------EAQVDIIDRLP-TP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~------~~~v~vie~~~-~~   56 (334)
                      ..++|+|||||++|++||..|.+.+.      +.+|+|||+++ .+
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            35789999999999999999998751      27999999998 87

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.89  E-value=0.0014  Score=68.58  Aligned_cols=82  Identities=12%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      .++|+|||+|+.|+.+|..|++.+  .+|+|+++.+.+.        +      .     .+.+++.||+++++..+.. 
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G--~~Vtvv~~~~~~~--------~------~-----~~~l~~~GV~v~~~~~v~~i  342 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATG--GVVAVIDARSSIS--------A------A-----AAQAVADGVQVISGSVVVDT  342 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGT--CCSEEEESCSSCC--------H------H-----HHHHHHTTCCEEETEEEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcC--CcEEEEECCCccc--------h------h-----HHHHHhCCeEEEeCCEeEEE
Confidence            479999999999999999999997  7899999876431        1      1     2345677999988875421 


Q ss_pred             ---------EEeccc-------c---eeccCeEEEeccCCCCCC
Q 019876           98 ---------SVSLSE-------L---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        98 ---------~v~~~~-------~---~~~yd~lIlATGs~~p~~  122 (334)
                               .+.+.+       +   .+.+|.||+|+|. .|..
T Consensus       343 ~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~-~P~~  385 (965)
T 2gag_A          343 EADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGF-NPVV  385 (965)
T ss_dssp             EECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE-EECC
T ss_pred             eccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCc-CcCh
Confidence                     233322       2   3589999999997 4653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=96.88  E-value=0.0023  Score=55.21  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      -+|+|||||.+|+++|..|++                    .|. +|+++++.
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~--------------------~g~-~v~lie~~   35 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQ--------------------KGV-RVGLLTQS   35 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEecC
Confidence            469999999999999999996                    676 59999987

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.86  E-value=0.0013  Score=62.92  Aligned_cols=74  Identities=19%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|.|||.|.+|+++|..|.++|  ++|+++|..+..       . +          ...+.++..|++++.+...  
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~-------~-~----------~~~~~L~~~gi~~~~g~~~--   65 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFD-------E-N----------PTAQSLLEEGIKVVCGSHP--   65 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGG-------G-C----------HHHHHHHHTTCEEEESCCC--
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCccc-------C-C----------hHHHHHHhCCCEEEECCCh--
Confidence            4689999999999999999999997  999999986420       0 1          1223455668988765431  


Q ss_pred             EEecccceec-cCeEEEeccC
Q 019876           98 SVSLSELRQL-YHVVVLAYGA  117 (334)
Q Consensus        98 ~v~~~~~~~~-yd~lIlATGs  117 (334)
                          .+.... +|.||+++|.
T Consensus        66 ----~~~~~~~~d~vv~spgi   82 (451)
T 3lk7_A           66 ----LELLDEDFCYMIKNPGI   82 (451)
T ss_dssp             ----GGGGGSCEEEEEECTTS
T ss_pred             ----HHhhcCCCCEEEECCcC
Confidence                111123 8999999998

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.80  E-value=0.00097  Score=66.87  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=31.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhc----CCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKA----HQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~----~~~~~v~vie~~~~   55 (334)
                      ..+|+|||||.||++||..|++.    +|+.+|+|+|+.+.
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            46899999999999999999987    12399999999753

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.78  E-value=0.0011  Score=66.35  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             CCeEEEECCchHHHHHHHHHh---h-cCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTL---K-AHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~---~-~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||||+||++||..|+   + .+  .+|+|+|+.+.
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G--~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTT--CCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCC--CeEEEEeCcCC
Confidence            468999999999999999999   5 66  89999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.70  E-value=0.004  Score=59.01  Aligned_cols=91  Identities=11%  Similarity=0.041  Sum_probs=57.6

Q ss_pred             CeEEEECCchHH------HHHH----HHHhhcCC--CCe-EEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCC
Q 019876           20 LRVCVVGSGPAG------FYTA----EKTLKAHQ--EAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER   86 (334)
Q Consensus        20 ~~vvIIGaG~aG------l~aA----~~l~~~~~--~~~-v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~   86 (334)
                      .+++|||+|+.|      +..|    ..+++.+.  ..+ |+++++.+.++...   . +..   .+....+.+.+++.|
T Consensus       150 ~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~---l-~~~---~~~~~~~~~~l~~~g  222 (437)
T 3sx6_A          150 PGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLG---I-QGV---GDSKGILTKGLKEEG  222 (437)
T ss_dssp             CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTT---T-TCC---TTHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccc---c-Ccc---hHHHHHHHHHHHHCC
Confidence            457899997653      5555    66666651  123 99999987654321   1 222   124456667778889


Q ss_pred             cEEEeCeEEce----EEecc----------cceeccCeEEEeccC
Q 019876           87 CSFFGNVTLGS----SVSLS----------ELRQLYHVVVLAYGA  117 (334)
Q Consensus        87 i~~~~~~~v~~----~v~~~----------~~~~~yd~lIlATGs  117 (334)
                      |+++.+..+..    .+.+.          ..++.||.+++|+|.
T Consensus       223 I~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          223 IEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             CEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             CEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence            99999876631    12222          223589999999996

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.67  E-value=0.0017  Score=61.90  Aligned_cols=76  Identities=17%  Similarity=0.133  Sum_probs=53.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||.|.+|+++|..|.++|  ++|+++|.....         |..           ..++ .|+++..+...  
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~---------~~~-----------~~l~-~G~~~~~g~~~--   58 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTP---------PGL-----------DKLP-EAVERHTGSLN--   58 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTT--CCCEEEESSSSC---------TTG-----------GGSC-TTSCEEESSCC--
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCC--CEEEEEECCCCc---------chh-----------HHhh-CCCEEEECCCc--
Confidence            3578999999999999999999987  999999987532         211           2345 68877655421  


Q ss_pred             EEecccceeccCeEEEeccCCCCCCC
Q 019876           98 SVSLSELRQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        98 ~v~~~~~~~~yd~lIlATGs~~p~~~  123 (334)
                         .+... .+|.||+++|. .+..|
T Consensus        59 ---~~~~~-~~d~vV~s~gi-~~~~p   79 (439)
T 2x5o_A           59 ---DEWLM-AADLIVASPGI-ALAHP   79 (439)
T ss_dssp             ---HHHHH-TCSEEEECTTS-CTTCH
T ss_pred             ---HHHhc-cCCEEEeCCCC-CCCCH
Confidence               11122 68999999997 34433

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=96.61  E-value=0.0032  Score=59.15  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      -+|+|||||.+|+.+|..|++                    .|. +|+|+++.+.
T Consensus         5 ~dViIIGgG~aGl~aA~~la~--------------------~G~-~V~vlEk~~~   38 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAK--------------------LGK-SVTVFDNGKK   38 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHh--------------------CCC-CEEEEeCCCC
Confidence            369999999999999999996                    676 5999998764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.58  E-value=0.011  Score=56.39  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=31.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhc-------------------CCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKA-------------------HQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~-------------------~~~~~v~vie~~~~   55 (334)
                      ..++|+|||+|+.|+.+|..|.+.                   ....+|+|+++.+.
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            468999999999999999999874                   11249999998764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.57  E-value=0.0045  Score=53.30  Aligned_cols=72  Identities=14%  Similarity=0.088  Sum_probs=50.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||||..|...+..|.+.|  .+|+|++++..                .+    +..+.+..++.++...    
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~----------------~~----l~~l~~~~~i~~i~~~----   83 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVS----------------AE----INEWEAKGQLRVKRKK----   83 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCC----------------HH----HHHHHHTTSCEEECSC----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCC----------------HH----HHHHHHcCCcEEEECC----
Confidence            5689999999999999999999997  99999987421                11    2333344556664322    


Q ss_pred             EEecccceeccCeEEEeccC
Q 019876           98 SVSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        98 ~v~~~~~~~~yd~lIlATGs  117 (334)
                       ....+ -..+|.||.|||.
T Consensus        84 -~~~~d-L~~adLVIaAT~d  101 (223)
T 3dfz_A           84 -VGEED-LLNVFFIVVATND  101 (223)
T ss_dssp             -CCGGG-SSSCSEEEECCCC
T ss_pred             -CCHhH-hCCCCEEEECCCC
Confidence             11111 1368999999997

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.57  E-value=0.0075  Score=63.52  Aligned_cols=84  Identities=23%  Similarity=0.309  Sum_probs=56.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..+|+|||||..|+.+|..+++.+  . +|+++++.+..       ..|..  ..++     ..+++.|++++.+..+..
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G--~~~Vtvv~r~~~~-------~~~~~--~~e~-----~~~~~~Gv~~~~~~~~~~  395 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCG--ARRVFLVFRKGFV-------NIRAV--PEEV-----ELAKEEKCEFLPFLSPRK  395 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTT--CSEEEEECSSCGG-------GCCSC--HHHH-----HHHHHTTCEEECSEEEEE
T ss_pred             CCcEEEECCChHHHHHHHHHHHcC--CCEEEEEEecChh-------hCCCC--HHHH-----HHHHHcCCEEEeCCCceE
Confidence            469999999999999999999986  5 89999987521       11322  1222     234566888876654311


Q ss_pred             ------E---Eecc--------------c--ceeccCeEEEeccCC
Q 019876           98 ------S---VSLS--------------E--LRQLYHVVVLAYGAE  118 (334)
Q Consensus        98 ------~---v~~~--------------~--~~~~yd~lIlATGs~  118 (334)
                            .   +.+.              +  ..+++|.||+|+|..
T Consensus       396 i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~  441 (1025)
T 1gte_A          396 VIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSV  441 (1025)
T ss_dssp             EEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEE
T ss_pred             EEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCC
Confidence                  1   1110              1  135899999999983

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.57  E-value=0.0013  Score=56.16  Aligned_cols=32  Identities=25%  Similarity=0.476  Sum_probs=29.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |+|+|+|+|..|...|..|.+.+  .+|+++|++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g--~~v~vid~~   32 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRK--YGVVIINKD   32 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECC
Confidence            58999999999999999999987  999999976

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.57  E-value=0.0039  Score=50.04  Aligned_cols=78  Identities=15%  Similarity=0.119  Sum_probs=49.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceE
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS   98 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~   98 (334)
                      .++|+|+|+|..|...|..|.+.+  .+|+++++++.                 +....+...+ ..++.++.+......
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~~~-----------------~~~~~~~~~~-~~~~~~i~gd~~~~~   62 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRG--QNVTVISNLPE-----------------DDIKQLEQRL-GDNADVIPGDSNDSS   62 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCH-----------------HHHHHHHHHH-CTTCEEEESCTTSHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCh-----------------HHHHHHHHhh-cCCCeEEEcCCCCHH
Confidence            468999999999999999999987  99999998631                 1111222222 235666544321111


Q ss_pred             Eecccc-eeccCeEEEeccC
Q 019876           99 VSLSEL-RQLYHVVVLAYGA  117 (334)
Q Consensus        99 v~~~~~-~~~yd~lIlATGs  117 (334)
                       .+... -..+|.||+||+.
T Consensus        63 -~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A           63 -VLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             -HHHHHTTTTCSEEEECSSC
T ss_pred             -HHHHcChhhCCEEEEecCC
Confidence             11111 2368999999986

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.56  E-value=0.002  Score=50.87  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +++|+|+|+|..|...|..|.+.+  ++|+++|++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECC
Confidence            468999999999999999999987  999999975

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.55  E-value=0.0098  Score=56.87  Aligned_cols=36  Identities=19%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhh--------------------cCCCC-eEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLK--------------------AHQEA-QVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~--------------------~~~~~-~v~vie~~~~   55 (334)
                      ..++|+|||+|..|+.+|..|.+                    .+  . +|+|+++.+.
T Consensus       144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g--~~~V~lv~r~~~  200 (460)
T 1cjc_A          144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSR--VKTVWIVGRRGP  200 (460)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCC--CCEEEEECSSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCC--CcEEEEEEcCCh
Confidence            46899999999999999999983                    43  5 7999998764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.36  E-value=0.011  Score=57.99  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ...|+|||+|..|+.+|..|++                    .|. +|+|+++.+.+
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~--------------------~G~-~V~vlEk~~~~  161 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATD--------------------SGA-KVILIEKEPVI  161 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCC
Confidence            3579999999999999999996                    676 59999987543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.36  E-value=0.012  Score=54.95  Aligned_cols=88  Identities=10%  Similarity=0.008  Sum_probs=59.8

Q ss_pred             CeEEEECCc-------------------h------HHHHHHH----HHhhcC--CCCeEEEEcCCCCCccccccccCCCC
Q 019876           20 LRVCVVGSG-------------------P------AGFYTAE----KTLKAH--QEAQVDIIDRLPTPFGLVRSGVAPDH   68 (334)
Q Consensus        20 ~~vvIIGaG-------------------~------aGl~aA~----~l~~~~--~~~~v~vie~~~~~gg~~~~~~~p~~   68 (334)
                      .+++|||+|                   +      +|+..|.    .+++.+  ++.+|+++++.+.+         |.+
T Consensus       146 ~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l---------~~~  216 (409)
T 3h8l_A          146 GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYL---------SDL  216 (409)
T ss_dssp             SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSS---------TTB
T ss_pred             CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccc---------ccc
Confidence            577899999                   2      4666664    455554  23589999987521         211


Q ss_pred             cchhHHHHHHHHHhhcCCcEEEeCeEEc----eEEecccc-eeccCeEEEeccCC
Q 019876           69 PETKIVINQFSRVVQHERCSFFGNVTLG----SSVSLSEL-RQLYHVVVLAYGAE  118 (334)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~----~~v~~~~~-~~~yd~lIlATGs~  118 (334)
                        ...+...+.+.+++.||++++++.+.    ..+.+.++ ++++|.||+|+|..
T Consensus       217 --~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          217 --SPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             --CHHHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEE
T ss_pred             --CHHHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCC
Confidence              24566677788888899999887652    23445444 46899999999983

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.34  E-value=0.0029  Score=61.89  Aligned_cols=36  Identities=28%  Similarity=0.521  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++++|||+|++|+.+|..|.+.+  .+|+|+|+.+.
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g--~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAG--KKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence            4579999999999999999999986  99999999764

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.28  E-value=0.0021  Score=62.82  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=32.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+++||||+|+||+.+|..|.+ +  .+|.|+|+.+..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g--~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-K--YKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-T--SCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-C--CcEEEEecCCCc
Confidence            34799999999999999999999 6  899999998653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=96.21  E-value=0.012  Score=53.92  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=29.8

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||||.+|+-+|..|++                    .|. +|+|++|++.+
T Consensus         6 DViIVGaGpaGl~~A~~La~--------------------~G~-~V~v~Er~~~~   39 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAK--------------------YGL-KTLMIEKRPEI   39 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSST
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCC
Confidence            49999999999999999997                    677 59999998654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=96.19  E-value=0.03  Score=51.98  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=30.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .+|+|||||.+|+-+|..|++                    .|. +|+|++++...
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~--------------------~G~-~V~viE~~~~~   41 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGR--------------------QGH-RVVVVEQARRE   41 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEEeCCCCC
Confidence            479999999999999999996                    676 59999987543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=96.18  E-value=0.024  Score=55.96  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..+|+|||||.+|+-+|..|++                    .|. +|+|+++..
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar--------------------~G~-~V~LiEr~~   56 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHK--------------------LGH-DVTIYERSA   56 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHc--------------------CCC-CEEEEcCCC
Confidence            4689999999999999999996                    676 699999984

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.16  E-value=0.0017  Score=62.17  Aligned_cols=35  Identities=23%  Similarity=0.467  Sum_probs=31.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..|+|+|+|+|-.|...|..|...+  .+|+++|+++
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~--~~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGEN--NDITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTT--EEEEEEESCH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence            4689999999999999999999886  9999999874

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.14  E-value=0.0037  Score=60.54  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=31.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..+++||||+|+||..+|..|.+. ++.+|.|+|+.+
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~   51 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGE   51 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSB
T ss_pred             CCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCC
Confidence            468999999999999999999874 258999999874

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.08  E-value=0.02  Score=52.11  Aligned_cols=72  Identities=18%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             CCCeEEEECCchHHHH-HHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFY-TAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~-aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ..++|.|||.|.+|++ +|..|.++|  ++|+++|..+.+         |           ..+.++..|++++.+..  
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G--~~V~~~D~~~~~---------~-----------~~~~L~~~gi~v~~g~~--   58 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAG--FEVSGCDAKMYP---------P-----------MSTQLEALGIDVYEGFD--   58 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTT--CEEEEEESSCCT---------T-----------HHHHHHHTTCEEEESCC--
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCC--CEEEEEcCCCCc---------H-----------HHHHHHhCCCEEECCCC--
Confidence            3579999999999997 788888887  999999986431         1           12234556888875532  


Q ss_pred             eEEecccce-eccCeEEEeccC
Q 019876           97 SSVSLSELR-QLYHVVVLAYGA  117 (334)
Q Consensus        97 ~~v~~~~~~-~~yd~lIlATGs  117 (334)
                          ..... ..+|.||++.|.
T Consensus        59 ----~~~l~~~~~d~vV~Spgi   76 (326)
T 3eag_A           59 ----AAQLDEFKADVYVIGNVA   76 (326)
T ss_dssp             ----GGGGGSCCCSEEEECTTC
T ss_pred             ----HHHcCCCCCCEEEECCCc
Confidence                12222 358999999998

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=96.05  E-value=0.015  Score=56.15  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ....|+|||+|.+|+-+|..|++                    .|. +|+|+++....
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~--------------------~G~-~v~vlE~~~~~   46 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRL--------------------AGV-EVVVLERLVER   46 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCCC-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCCC
Confidence            44689999999999999999996                    677 59999988644

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=96.05  E-value=0.0095  Score=54.30  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=64.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC--CcceEEEEeecCccccCCC-----------HHHHHH
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS--SIRKVYLVGRRGPVQAACT-----------AKELRE  226 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vtiv~r~~~~~~~~~-----------~~~~~~  226 (334)
                      -+|+|||+|..|+-+|..|++                    .  |. +|+|+++.........           ......
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~--------------------~~~g~-~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~  124 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAK--------------------NRPDL-KVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHL  124 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHH--------------------HCTTS-CEEEECSSSSCCTTTTCCGGGCCCEEEETTTHH
T ss_pred             CCEEEECccHHHHHHHHHHHh--------------------cCCCC-eEEEEecCccccccccccCcccchhhhhhHHHH
Confidence            379999999999999999986                    3  54 6999998754321100           022234


Q ss_pred             HHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCC-C--C
Q 019876          227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERS-G--H  303 (334)
Q Consensus       227 ~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~-~--~  303 (334)
                      .|...|+.+.... .+.          .........+.|.+.+.        ...||+++.++.++++....+.+ +  +
T Consensus       125 ~L~~~Gv~~~~~g-~~~----------~~~~~~~~~~~L~~~a~--------~~~GV~i~~~~~V~~Ll~~~~~~~g~~r  185 (326)
T 2gjc_A          125 FLQELEIPYEDEG-DYV----------VVKHAALFISTVLSKVL--------QLPNVKLFNATCVEDLVTRPPTEKGEVT  185 (326)
T ss_dssp             HHHHTTCCCEECS-SEE----------EESCHHHHHHHHHHHHH--------TSTTEEEETTEEEEEEEECCCC-----C
T ss_pred             HHHhhCcccccCC-CeE----------EEcchHHHHHHHHHHHH--------HhcCcEEEecceeeeeeecccccCCCcE
Confidence            4444555544321 110          00001122333444433        23589999999999997211002 4  8


Q ss_pred             eeEEEEEE
Q 019876          304 VSGVHFEK  311 (334)
Q Consensus       304 v~~v~~~~  311 (334)
                      |.+|.+..
T Consensus       186 V~GVvv~~  193 (326)
T 2gjc_A          186 VAGVVTNW  193 (326)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEecc
Confidence            99998864

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=96.03  E-value=0.0085  Score=58.83  Aligned_cols=35  Identities=14%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -.|+|||+|..|+-+|..|++                    .|. +|+|+++.+.+
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~--------------------~G~-~V~vlEk~~~~  156 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKK--------------------AGA-NVILVDKAPFS  156 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCC
Confidence            479999999999999999986                    576 59999987643

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=95.99  E-value=0.0054  Score=60.47  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+++||||||.||+.+|..|.+.+ +.+|.|+|+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~-~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENP-NVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTST-TSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCC-CCcEEEEecCCC
Confidence            3579999999999999999999874 679999999765

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.97  E-value=0.0052  Score=52.41  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||+|.+|+-+|..|++                    .|. +|+|+++++.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~--------------------~G~-~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTA--------------------AGH-QVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCCC
Confidence            59999999999999999997                    787 59999987643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.94  E-value=0.0094  Score=47.87  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=32.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...++|+|+|+|..|..+|..|.+.+  .+|+++++++
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~   52 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNE   52 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence            35679999999999999999999987  8999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=95.90  E-value=0.016  Score=57.22  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC------CcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS------SIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~------~~~~Vtiv~r~~~~  215 (334)
                      -.|+|||||..|+-+|..|++                    .      |. +|+|+++...+
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~--------------------~~~~~~~G~-~V~vlEk~~~~   76 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQ--------------------LAAQHEKDL-RVCLVEKAAHI   76 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------HHHHTTCCC-CEEEECSSSST
T ss_pred             CCEEEECcCHHHHHHHHHHHh--------------------cccccCCCC-cEEEEeCCCCC
Confidence            479999999999999999986                    4      65 59999998654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=95.89  E-value=0.019  Score=56.50  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..+|+|||+|..|+.+|..|++                    .|. +|+|+++.+.
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~--------------------~g~-~v~~~e~~~~  160 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARD--------------------AGA-KVILLEKEPI  160 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHS--------------------SSC-CEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCCC
Confidence            4589999999999999999996                    565 5999998754

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=95.87  E-value=0.012  Score=56.72  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ...+|+|||+|.+|+-+|..|++                    .|. +|+|+++....
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~--------------------~G~-~v~vlE~~~~~   47 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRL--------------------GGV-DVMVLEQLPQR   47 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCCC
Confidence            34689999999999999999996                    677 59999987544

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.78  E-value=0.011  Score=45.92  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=29.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .++|+|||+|..|...|..|.+.+  .+|++++++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECC
Confidence            479999999999999999999986  899999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.74  E-value=0.032  Score=50.93  Aligned_cols=36  Identities=19%  Similarity=0.167  Sum_probs=31.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~   54 (334)
                      ..+++|+|||+|..|...|..|...+  + +|+++|.++
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~~g--~~~V~L~D~~~   43 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCALRE--LADVVLYDVVK   43 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCh
Confidence            34579999999999999999999886  5 899999864

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=95.69  E-value=0.0077  Score=59.38  Aligned_cols=37  Identities=19%  Similarity=0.298  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...+++||||||.||+.+|..|.+. ++.+|.|+|+.+
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence            3468999999999999999999875 369999999876

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.61  E-value=0.0091  Score=57.76  Aligned_cols=36  Identities=17%  Similarity=0.077  Sum_probs=32.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      .++++|||+|++|+.+|..|.+.+  .+|+|+|+.+..
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~--~~v~~~e~~~~~   40 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAG--VQTLMLEMGQLW   40 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCC
Confidence            479999999999999999999976  999999998643

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.48  E-value=0.0074  Score=57.91  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=29.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      |+|+|||+|..|+-+|..|++                    .|. +|+|+++++.+
T Consensus         2 k~VvVIGaG~~GL~aA~~La~--------------------~G~-~V~VlEa~~~~   36 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQA--------------------AGI-PVLLLEQRDKP   36 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH--------------------TTC-CEEEECCC---
T ss_pred             CCEEEECCcHHHHHHHHHHHH--------------------CCC-cEEEEccCCCC
Confidence            789999999999999999997                    675 59999988643

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.46  E-value=0.012  Score=57.00  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++++|||+|++|+.+|..|.+.+  .+|.|+|+...
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~--~~v~~~e~~~~   45 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAG--IPTQIVEMGRS   45 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCC
Confidence            4579999999999999999999975  99999998754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=95.41  E-value=0.018  Score=53.54  Aligned_cols=38  Identities=16%  Similarity=0.200  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|||||||||..|+-+|..|++                   ....-+|+||++++..
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~-------------------~~~~~~Vtlie~~~~~   39 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKL-------------------ADPSIEVTLIEPNETY   39 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-------------------HCTTSEEEEECSCSSE
T ss_pred             cCEEEEECCcHHHHHHHHHHHh-------------------cCcCCeEEEEeCCCCC
Confidence            7999999999999999999875                   1122369999988653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=95.40  E-value=0.016  Score=53.07  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=28.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC--CcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS--SIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vtiv~r~~~  214 (334)
                      -.|+|||+|..|+-+|..|++                    .  |. +|+|+++...
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~--------------------~~~G~-~V~LiEk~~~  115 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLST--------------------LRPDL-RITIVEAGVA  115 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------HCTTS-CEEEEESSSS
T ss_pred             CCEEEECccHHHHHHHHHHHh--------------------cCCCC-EEEEEeCCCc
Confidence            479999999999999999986                    3  55 5999998854

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=95.19  E-value=0.026  Score=55.51  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=29.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -.|+|||+|.+|+-+|..|++                    .|. +|+|+++....
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~--------------------~G~-~V~VlEr~~~~   84 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRA--------------------GGV-GALVLEKLVEP   84 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEBSCSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEcCCCCC
Confidence            479999999999999999996                    677 59999987543

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.15  E-value=0.075  Score=48.06  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|+|||+|..|.+.|..++..+-..+++++|..+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            68999999999999999998876222899999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.15  E-value=0.029  Score=53.52  Aligned_cols=34  Identities=21%  Similarity=0.176  Sum_probs=31.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||+|..|...+..|.+.|  .+|+|++++
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~g--a~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCc--CEEEEEcCC
Confidence            4689999999999999999999997  999999975

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.08  E-value=0.012  Score=55.50  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=31.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||.|..|...|..|.+.+  .+|+++|+++
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~   37 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDP   37 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence            3468999999999999999999987  9999999874

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=95.04  E-value=0.07  Score=47.48  Aligned_cols=82  Identities=2%  Similarity=-0.116  Sum_probs=52.1

Q ss_pred             CCeEEEECCch-HHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc-
Q 019876           19 PLRVCVVGSGP-AGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-   96 (334)
Q Consensus        19 ~~~vvIIGaG~-aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-   96 (334)
                      .++++|||+|. +++.+|..+.+.+  .+|+++.+.+..         .     .    .+.+.+++.++.++.+.... 
T Consensus       146 ~~~~~VIggG~~~~~e~a~~~~~~~--~~v~i~~~~~~~---------~-----~----~~~~~l~~~g~~~~~~~v~~~  205 (304)
T 4fk1_A          146 DQPLIIISENEDHTLHMTKLVYNWS--TDLVIATNGNEL---------S-----Q----TIMDELSNKNIPVITESIRTL  205 (304)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHTTTC--SCEEEECSSCCC---------C-----H----HHHHHHHTTTCCEECSCEEEE
T ss_pred             CCceeeecCCCchhhhHHHHHHhCC--ceEEEEeccccc---------h-----h----hhhhhhhccceeEeeeeEEEe
Confidence            45677777775 6788898888876  889998775431         1     1    23344566788887665321 


Q ss_pred             -------eEEecccce-eccCeEEEeccCCCC
Q 019876           97 -------SSVSLSELR-QLYHVVVLAYGAESD  120 (334)
Q Consensus        97 -------~~v~~~~~~-~~yd~lIlATGs~~p  120 (334)
                             ..+.+.+++ ..+|.+|+++|...|
T Consensus       206 ~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~  237 (304)
T 4fk1_A          206 QGEGGYLKKVEFHSGLRIERAGGFIVPTFFRP  237 (304)
T ss_dssp             ESGGGCCCEEEETTSCEECCCEEEECCEEECS
T ss_pred             ecCCCeeeeeeccccceeeecceeeeeccccC
Confidence                   123444443 478889998887433

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.04  E-value=0.019  Score=56.12  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=32.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++++|||+|++|+.+|..|.+. ++.+|.|+|+.+.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~   48 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPD   48 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCc
Confidence            357999999999999999999987 2489999999754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.02  E-value=0.025  Score=55.85  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++++|||+|++|+.+|..|.+. ++.+|.|+|+...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~~   59 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFY   59 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCCc
Confidence            457999999999999999999983 2499999998754

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=94.86  E-value=0.013  Score=57.50  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+++||||||.||+.+|..|.+. ++.+|.|+|+.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~   37 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVS   37 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCc
Confidence            36899999999999999999984 3699999998754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.85  E-value=0.031  Score=41.93  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +++|+|+|+|..|..++..|.+.+ ..+|++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCC
Confidence            468999999999999999999885 3789999875

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=94.84  E-value=0.031  Score=55.56  Aligned_cols=42  Identities=19%  Similarity=0.120  Sum_probs=38.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ..++++|||+|..|...|..|.+.|  .+|.++|++++.||.+.
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g--~~vl~id~~~~~gg~~~   48 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSG--QRVLHVDSRSYYGGNWA   48 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCCcccCccc
Confidence            3589999999999999999999997  99999999999988763

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.75  E-value=0.034  Score=50.12  Aligned_cols=41  Identities=22%  Similarity=0.226  Sum_probs=33.4

Q ss_pred             cccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        12 ~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +......+++|.|||.|..|...|..|.+.|  ++|+++++++
T Consensus        14 ~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G--~~V~~~dr~~   54 (310)
T 3doj_A           14 LVPRGSHMMEVGFLGLGIMGKAMSMNLLKNG--FKVTVWNRTL   54 (310)
T ss_dssp             ----CCCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSG
T ss_pred             cCcccccCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence            4444556789999999999999999999997  8999999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.72  E-value=0.033  Score=52.84  Aligned_cols=37  Identities=24%  Similarity=0.148  Sum_probs=32.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+.+|.|||.|+.|+..|..+++.|  ++|+.||-++.
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G--~~V~g~Did~~   55 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLG--HRVVGYDVNPS   55 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCC--CcEEEEECCHH
Confidence            35679999999999999999999997  99999998754

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.72  E-value=0.058  Score=46.29  Aligned_cols=53  Identities=17%  Similarity=0.270  Sum_probs=41.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++|+|||||.+|...+..|.+                    .|+ +|+++...       ..+++.++.+..++.++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~--------------------~GA-~VtVvap~-------~~~~l~~l~~~~~i~~i~   81 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQ--------------------EGA-AITVVAPT-------VSAEINEWEAKGQLRVKR   81 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGG--------------------GCC-CEEEECSS-------CCHHHHHHHHTTSCEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEECCC-------CCHHHHHHHHcCCcEEEE
Confidence            68999999999999999999996                    677 59999753       124566666666677764


Q ss_pred             c
Q 019876          238 R  238 (334)
Q Consensus       238 ~  238 (334)
                      .
T Consensus        82 ~   82 (223)
T 3dfz_A           82 K   82 (223)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.70  E-value=0.046  Score=49.00  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|+|||+|..|.+.|..|...+...+++++|..+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            68999999999999999998886222899999763

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=94.67  E-value=0.024  Score=52.39  Aligned_cols=35  Identities=26%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -+|+|||||.+|+-+|..|++                    .|. +|+|++|.+..
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~--------------------~G~-~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRK--------------------HGI-KVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHh--------------------CCC-CEEEEecCCCC
Confidence            379999999999999999997                    687 59999987644

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.46  E-value=0.035  Score=43.22  Aligned_cols=33  Identities=18%  Similarity=0.145  Sum_probs=29.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +++|+|+|+|..|...|..|.+.+  .+|++++++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g--~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMG--HEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence            457999999999999999999987  899999875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.27  E-value=0.052  Score=44.57  Aligned_cols=33  Identities=15%  Similarity=0.035  Sum_probs=30.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhc-CCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~-~~~~~v~vie~~   53 (334)
                      .++|+|+|+|..|..+|..|.+. +  .+|+++|++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~   72 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIR   72 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECC
Confidence            56899999999999999999998 8  899999976

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.24  E-value=0.03  Score=49.60  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=32.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||+|..|...+..|.+.|  ++|+|++++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~G--a~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCC
Confidence            5689999999999999999999997  9999999753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.19  E-value=0.056  Score=50.55  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=31.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...+|+|||+|++|+.+|..++..|  .+|+++|+.+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCH
Confidence            3579999999999999999999997  8999999875

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=94.15  E-value=0.038  Score=52.09  Aligned_cols=37  Identities=22%  Similarity=0.178  Sum_probs=29.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      |+|||||||+.|+.+|..|++                   ...--+||||++++.+
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~-------------------~~~~~~VtlI~~~~~~   39 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRN-------------------LMPDLKITLISDRPYF   39 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHH-------------------HCTTCEEEEECSSSEE
T ss_pred             CcEEEECCCHHHHHHHHHHhc-------------------cCcCCeEEEEcCCCCC
Confidence            789999999999999999985                   1122369999998753

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=94.01  E-value=0.06  Score=51.38  Aligned_cols=37  Identities=30%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       157 ~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ....+|+|||+|.+|+-+|..|++                    .|. +|+|++++++
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~--------------------~g~-~v~v~E~~~~   45 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQK--------------------AGY-KVTVLEARTR   45 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeccCC
Confidence            356799999999999999999996                    565 6999988754

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=94.00  E-value=0.041  Score=51.42  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ++|+|||+|.+|+-+|..|++                    .|. +|+|+++++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~--------------------~G~-~V~vlE~~~~   34 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLAR--------------------NGH-EIIVLEKSAM   34 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeCCCC
Confidence            479999999999999999996                    575 6999998754

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=94.00  E-value=0.077  Score=50.72  Aligned_cols=31  Identities=32%  Similarity=0.467  Sum_probs=27.1

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .|+|||+|..|+-+|..|++                    .|. +|+|+++.
T Consensus         1 DVvVIG~G~AGl~aA~~la~--------------------~G~-~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRR--------------------AGK-KVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeCC
Confidence            38999999999999999996                    575 59999887

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.79  E-value=0.061  Score=49.90  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .+.+|+|||+|.+|+.+|..++..|  .+|+++|+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence            4579999999999999999999997  8999999874

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.78  E-value=0.08  Score=47.33  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=31.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|.|||+|..|...|..|.+.|  ++|+++|+++
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~   48 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTE   48 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence            4578999999999999999999987  8999999864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=93.77  E-value=0.039  Score=52.83  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..++|+|||+|.+|+.+|..|++                    .|. +|+|+++++++
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~--------------------~g~-~v~vlE~~~~~   68 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAG--------------------AGH-QVTVLEASERP   68 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH--------------------HTC-EEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh--------------------CCC-eEEEEECCCCC
Confidence            45799999999999999999986                    565 69999987543

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.73  E-value=0.046  Score=50.95  Aligned_cols=34  Identities=24%  Similarity=0.176  Sum_probs=29.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .+|+|||+|..|+-+|..|++                    .|. +|+|+++++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~--------------------~G~-~V~vlE~~~~   34 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSK--------------------AGH-EVEVFERLPI   34 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHH--------------------TTC-EEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh--------------------CCC-ceEEEeCCCC
Confidence            379999999999999999996                    564 6999999754

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=93.72  E-value=0.055  Score=51.32  Aligned_cols=34  Identities=35%  Similarity=0.389  Sum_probs=28.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc-eEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR-KVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~Vtiv~r~~  213 (334)
                      ++|+|||||.+|+-+|..|++                    .|.. +|+|+++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~--------------------~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSR--------------------APCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHT--------------------SSSCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHh--------------------CCCCCcEEEEeCCC
Confidence            589999999999999999996                    4541 699999864

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=93.70  E-value=0.066  Score=49.67  Aligned_cols=35  Identities=29%  Similarity=0.495  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..+|+|||||.+|+-+|..|++                    .|. +|+|+++.+.
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~   60 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQ--------------------NGI-DVSVYERDND   60 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT--------------------TTC-EEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence            4689999999999999999996                    676 6999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.60  E-value=0.075  Score=47.84  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC--eEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~--~v~vie~~   53 (334)
                      .+++|+|||+|..|...|..|.+.+  .  +|++++++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g--~~~~V~l~d~~   41 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRG--IAREIVLEDIA   41 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCC
Confidence            3579999999999999999999886  6  99999875

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=93.58  E-value=0.059  Score=49.64  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..+|+|||||.+|+.+|..|++                    .|. +|+|++++...
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~--------------------~G~-~v~viE~~~~~   46 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQ--------------------NGW-DVRLHEKSSEL   46 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEecCCCC
Confidence            4689999999999999999996                    676 69999988654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=93.50  E-value=0.064  Score=49.97  Aligned_cols=36  Identities=28%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .+|+|||||.+|+-+|..|++                    .|.++|+|+++++.+
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~--------------------~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQ--------------------AGIGKVTLLESSSEI   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEESSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHh--------------------CCCCeEEEEECCCCc
Confidence            589999999999999999996                    676449999998653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.50  E-value=0.16  Score=48.27  Aligned_cols=36  Identities=17%  Similarity=0.301  Sum_probs=32.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|.|||.|..|+..|..|++.|  ++|+++++++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G--~~V~~~D~~~~k   43 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFG--HEVVCVDKDARK   43 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCHHH
Confidence            468999999999999999999997  999999998653

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=93.46  E-value=0.068  Score=50.00  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=28.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++|+|||||..|+++|..+++                    .|. +|++++++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~--------------------~G~-~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLR--------------------LGV-PVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHH--------------------CCC-cEEEEeccC
Confidence            479999999999999999996                    676 599999764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=93.43  E-value=0.064  Score=49.77  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..+|+|||||.+|+-+|..|++                    .|. +|+|+++++..
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~~   40 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRD--------------------AGV-DVDVYERSPQP   40 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCCC
Confidence            4689999999999999999996                    676 69999998653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=93.43  E-value=0.047  Score=52.22  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=28.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      -.|+|||||.+|+-+|..|++                   ..|. +|+|++++++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k-------------------~~G~-~V~VlE~~~~   45 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQ-------------------IDGP-SWMIVDSNET   45 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-------------------HCCS-CEEEEESSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHh-------------------hCCC-CEEEEECCCC
Confidence            469999999999999999985                   1354 5899988753

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=93.42  E-value=0.068  Score=49.67  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +.-+|+|||||.+|+-+|..|++                    .|. +|+|++|.+..
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~--------------------~G~-~V~v~E~~~~~   58 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQ--------------------SGI-DCDVYEAVKEI   58 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEeCCCCC
Confidence            44689999999999999999996                    676 59999998643

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.41  E-value=0.051  Score=51.25  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .++|+|||||.+|+-+|..|++                    .|. +|+|++++.
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~--------------------~G~-~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQ--------------------HDV-DVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHH--------------------TTC-EEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHH--------------------CCC-eEEEEcCCC
Confidence            3689999999999999999996                    676 699999876

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=93.41  E-value=0.18  Score=48.52  Aligned_cols=72  Identities=18%  Similarity=0.102  Sum_probs=50.6

Q ss_pred             CCCCCeEEEECCchHHHH-HHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           16 SSNPLRVCVVGSGPAGFY-TAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~-aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ....++|.|||.|-+|++ +|..|.++|  ++|++.|....                 .    ..+.++..|+++..+..
T Consensus        19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~~~D~~~~-----------------~----~~~~l~~~gi~~~~g~~   75 (494)
T 4hv4_A           19 MRRVRHIHFVGIGGAGMGGIAEVLANEG--YQISGSDLAPN-----------------S----VTQHLTALGAQIYFHHR   75 (494)
T ss_dssp             ---CCEEEEETTTSTTHHHHHHHHHHTT--CEEEEECSSCC-----------------H----HHHHHHHTTCEEESSCC
T ss_pred             hccCCEEEEEEEcHhhHHHHHHHHHhCC--CeEEEEECCCC-----------------H----HHHHHHHCCCEEECCCC
Confidence            345689999999999997 699999997  99999987531                 1    11234566888876532


Q ss_pred             EceEEecccceeccCeEEEeccC
Q 019876           95 LGSSVSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        95 v~~~v~~~~~~~~yd~lIlATGs  117 (334)
                            .+. -..+|.||+.+|.
T Consensus        76 ------~~~-~~~~d~vV~Spgi   91 (494)
T 4hv4_A           76 ------PEN-VLDASVVVVSTAI   91 (494)
T ss_dssp             ------GGG-GTTCSEEEECTTS
T ss_pred             ------HHH-cCCCCEEEECCCC
Confidence                  111 1258999999997

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=93.41  E-value=0.055  Score=50.57  Aligned_cols=33  Identities=30%  Similarity=0.377  Sum_probs=28.9

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      +|+|||+|..|+-+|..|++                    .|. +|+|++++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~--------------------~G~-~V~vlE~~~~   35 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTN--------------------AGK-KVLLLEGGER   35 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHH--------------------cCC-eEEEEecCCC
Confidence            69999999999999999996                    676 6999998654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.38  E-value=0.082  Score=49.09  Aligned_cols=35  Identities=31%  Similarity=0.557  Sum_probs=31.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~   53 (334)
                      -...+|||+|||.||+.+|..+...|  . +|+++|+.
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~G--a~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAG--ATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcC--CCeEEEEECC
Confidence            35679999999999999999999997  7 99999986

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=93.32  E-value=0.052  Score=50.11  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=29.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC--CcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS--SIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vtiv~r~~~~  215 (334)
                      ++|+|||||.+|+-+|..|++                    .  |. +|+|+++.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~--------------------~~~G~-~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQ--------------------ARPLW-AIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--------------------HCTTS-EEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHh--------------------cCCCC-CEEEEECCCCC
Confidence            379999999999999999996                    4  65 69999998654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=93.28  E-value=0.066  Score=48.52  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=29.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      -.|+|||+|.+|+-+|..|++                    .|. +|+|+++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~--------------------~G~-~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAA--------------------GGH-EVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHh--------------------CCC-eEEEEeCCC
Confidence            479999999999999999996                    676 599999985

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.19  E-value=0.092  Score=49.17  Aligned_cols=35  Identities=31%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...+|+|||+|.+|+.++..++..|  .+|+++|+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~  205 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRP  205 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCH
Confidence            3679999999999999999999987  8999999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.17  E-value=0.073  Score=49.21  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=29.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      -.|+|||+|.+|+-+|..|++                    .|. +|+|+++...
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~--------------------~G~-~V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAE--------------------RGH-RVLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeCCCC
Confidence            379999999999999999996                    676 5999998754

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=93.15  E-value=0.075  Score=48.50  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..++|+|||+|.+|+-+|..|++                     |. +|+|+++.+.
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La~---------------------G~-~V~vlE~~~~   42 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLSA---------------------HG-RVVVLEREAQ   42 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT---------------------TS-CEEEECSSSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHhC---------------------CC-CEEEEECCCC
Confidence            35789999999999999999984                     65 5999999853

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=93.14  E-value=0.078  Score=49.45  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ...+|+|||||..|+-+|..|++                    .|..+|+|+++++++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~--------------------~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQ--------------------AGFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--------------------TTCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh--------------------CCCCcEEEEECCCCC
Confidence            45789999999999999999996                    562369999987543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.13  E-value=0.11  Score=48.31  Aligned_cols=35  Identities=31%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...+|+|||+|.+|+.++..++..|  .+|+++|+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence            4689999999999999999999987  8999999864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.12  E-value=0.07  Score=48.90  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+|+|||||.+|+-+|..|++                    .|. +|+|+++..
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~--------------------~G~-~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAK--------------------ENK-NTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEEeCCC
Confidence            589999999999999999996                    676 599999874

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.08  E-value=0.11  Score=45.73  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=30.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      |+|.|||+|..|...|..|.+.+  .+|+++++++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~   34 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQ   34 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCC--CCEEEEEcCcc
Confidence            58999999999999999999987  89999998753

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=93.05  E-value=0.062  Score=51.85  Aligned_cols=36  Identities=22%  Similarity=0.415  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..+|+|||||..|+-+|..|.+                    .|..+|+|++++++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~--------------------~G~~~V~VlEa~~r   43 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQ--------------------NGIQDCLVLEARDR   43 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHH--------------------TTCCSEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--------------------cCCCCEEEEeCCCC
Confidence            3689999999999999999996                    56235999988753

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.00  E-value=0.082  Score=49.15  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+|+|||||.+|+-+|..|++                    .|. +|+|+++..
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~--------------------~G~-~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNK--------------------SGF-KVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--------------------TTC-CEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEeCCC
Confidence            479999999999999999996                    676 599999985

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.95  E-value=0.11  Score=38.85  Aligned_cols=36  Identities=19%  Similarity=0.181  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..++|+|+|+|.+|..++..|.+                    .|..+|+++.|+.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~--------------------~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKT--------------------SSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHH--------------------CSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHh--------------------CCCceEEEEeCCH
Confidence            35789999999999999999986                    5644688888763

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.91  E-value=0.11  Score=46.84  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=29.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ++|+|||+|..|...|..|.+.+  .+|++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTG--HCVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTT--CEEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCC
Confidence            79999999999999999999987  899999875

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=92.90  E-value=0.86  Score=46.48  Aligned_cols=73  Identities=15%  Similarity=0.002  Sum_probs=44.5

Q ss_pred             CCCCeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc---cCCCCcchhHHHHHHHHHhhcCCcEEEeC
Q 019876           17 SNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG---VAPDHPETKIVINQFSRVVQHERCSFFGN   92 (334)
Q Consensus        17 ~~~~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~---~~p~~~~~~~~~~~~~~~~~~~~i~~~~~   92 (334)
                      ....+|+|.|+ |..|+.+...++..|  .+|+.....+.. ..+..+   ++...  ..++...+.+.....|++++.+
T Consensus       344 ~~G~~VLI~gaaGgvG~~aiqlAk~~G--a~V~~t~~~~k~-~~l~lga~~v~~~~--~~~~~~~i~~~t~g~GvDvVld  418 (795)
T 3slk_A          344 RPGESLLVHSAAGGVGMAAIQLARHLG--AEVYATASEDKW-QAVELSREHLASSR--TCDFEQQFLGATGGRGVDVVLN  418 (795)
T ss_dssp             CTTCCEEEESTTBHHHHHHHHHHHHTT--CCEEEECCGGGG-GGSCSCGGGEECSS--SSTHHHHHHHHSCSSCCSEEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeChHHh-hhhhcChhheeecC--ChhHHHHHHHHcCCCCeEEEEE
Confidence            45689999996 999999999888887  888887654321 111111   10100  1134445555555567887766


Q ss_pred             eE
Q 019876           93 VT   94 (334)
Q Consensus        93 ~~   94 (334)
                      +.
T Consensus       419 ~~  420 (795)
T 3slk_A          419 SL  420 (795)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.89  E-value=0.14  Score=48.93  Aligned_cols=79  Identities=16%  Similarity=0.163  Sum_probs=51.4

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ....++|+|+|||-.|..+|..|.+.   ++|.++|++.                  +-...+.+.+.  +..++.+...
T Consensus       232 ~~~~~~v~I~GgG~ig~~lA~~L~~~---~~v~iIE~d~------------------~r~~~la~~l~--~~~Vi~GD~t  288 (461)
T 4g65_A          232 EKPYRRIMIVGGGNIGASLAKRLEQT---YSVKLIERNL------------------QRAEKLSEELE--NTIVFCGDAA  288 (461)
T ss_dssp             GSCCCEEEEECCSHHHHHHHHHHTTT---SEEEEEESCH------------------HHHHHHHHHCT--TSEEEESCTT
T ss_pred             cccccEEEEEcchHHHHHHHHHhhhc---CceEEEecCH------------------HHHHHHHHHCC--CceEEecccc
Confidence            34567999999999999999998654   8999999863                  22233444443  3444443322


Q ss_pred             ceEEecccceeccCeEEEeccC
Q 019876           96 GSSVSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        96 ~~~v~~~~~~~~yd~lIlATGs  117 (334)
                      +..+-.+.+-..+|.+|-+||.
T Consensus       289 d~~~L~ee~i~~~D~~ia~T~~  310 (461)
T 4g65_A          289 DQELLTEENIDQVDVFIALTNE  310 (461)
T ss_dssp             CHHHHHHTTGGGCSEEEECCSC
T ss_pred             chhhHhhcCchhhcEEEEcccC
Confidence            2222222233579999999987

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.89  E-value=0.11  Score=46.29  Aligned_cols=33  Identities=18%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +++|.|||+|..|...|..|.+.+  .+|++++++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~   35 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGG--NDVTLIDQW   35 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCC--CcEEEEECC
Confidence            479999999999999999999987  899999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=92.88  E-value=0.062  Score=49.04  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=29.0

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .|+|||||.+|+-+|..|++                    .|. +|+|+++...
T Consensus         4 dvvIIG~Gi~Gl~~A~~La~--------------------~G~-~V~vle~~~~   36 (372)
T 2uzz_A            4 DLIIIGSGSVGAAAGYYATR--------------------AGL-NVLMTDAHMP   36 (372)
T ss_dssp             EEEESCTTHHHHHHHHHHHH--------------------TTC-CEEEECSSCS
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCC
Confidence            69999999999999999996                    676 5999998753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.81  E-value=0.14  Score=43.17  Aligned_cols=36  Identities=14%  Similarity=0.156  Sum_probs=31.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|.|||+|..|.+.|..|.+.+  .+|+++++++.
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g--~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAG--HEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTT--CEEEEECTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence            4579999999999999999999987  89999998754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.79  E-value=0.11  Score=48.02  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=31.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~   53 (334)
                      ...+|+|+|||.+|..+|..|...|  . +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G--~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLG--VKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECC
Confidence            5689999999999999999999997  5 89999986

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=92.76  E-value=0.085  Score=48.38  Aligned_cols=34  Identities=21%  Similarity=0.421  Sum_probs=29.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      -+|+|||+|.+|+-+|..|++                    .|. +|+|+++...
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~--------------------~G~-~V~vie~~~~   37 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAK--------------------QGV-KTLLVDAFDP   37 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHh--------------------CCC-eEEEEeCCCC
Confidence            479999999999999999996                    676 5999998753

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=92.69  E-value=0.046  Score=51.60  Aligned_cols=36  Identities=25%  Similarity=0.250  Sum_probs=29.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC-----cceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-----IRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Vtiv~r~~~~  215 (334)
                      ++|+|||||.+|+-+|..|++                    .|     ..+|+|+++++++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~--------------------~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEK--------------------EIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------HHTTTTCSEEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHH--------------------hccccCCCCCEEEEECCCCC
Confidence            689999999999999999996                    44     1469999987543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.64  E-value=0.14  Score=45.28  Aligned_cols=34  Identities=26%  Similarity=0.123  Sum_probs=31.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|.|||+|..|...|..+++.|  ++|+++|+++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHG--FAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCH
Confidence            469999999999999999999997  9999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.60  E-value=0.064  Score=42.23  Aligned_cols=33  Identities=18%  Similarity=0.118  Sum_probs=29.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .++|+|||+|..|...+..|.+.+  .+|+++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g--~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQ--YKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTT--CEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCC
Confidence            679999999999999999998876  789999875

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.59  E-value=0.14  Score=46.95  Aligned_cols=35  Identities=31%  Similarity=0.481  Sum_probs=31.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +++|+|||||..|..++..+++.|  ++++++|.++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G--~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAG--MKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCC
Confidence            479999999999999999999997  99999998754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.54  E-value=0.085  Score=48.34  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+|+|||||.+|+-+|..|++                    .|. +|+|+++..
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~--------------------~G~-~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAK--------------------RGE-EVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeCCC
Confidence            579999999999999999996                    676 599999874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.53  E-value=0.2  Score=39.21  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..++|+|+|.|.+|..+|..|.+                    .|. +|+++.+..
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~--------------------~g~-~v~vid~~~   40 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLA--------------------SDI-PLVVIETSR   40 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCH
Confidence            34789999999999999999986                    565 588887753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.51  E-value=0.14  Score=40.70  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+++|+|+|+|.+|..+|..|..                    .|. +|+++.|+.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~--------------------~g~-~V~vid~~~   52 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASS--------------------SGH-SVVVVDKNE   52 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESCG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--------------------CCC-eEEEEECCH
Confidence            67899999999999999999986                    565 699998864

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=92.50  E-value=0.13  Score=46.94  Aligned_cols=34  Identities=32%  Similarity=0.463  Sum_probs=29.3

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ...|+|||+|.+|+-+|..|++                    .|. +|+|+++..
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~--------------------~G~-~V~vle~~~   39 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILAR--------------------KGY-SVHILARDL   39 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--------------------CCC-EEEEEeccC
Confidence            3589999999999999999986                    575 699999853

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.46  E-value=0.13  Score=47.24  Aligned_cols=35  Identities=14%  Similarity=0.116  Sum_probs=31.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|.|||+|.-|.+.|..|.+.+  .+|+++++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G--~~V~l~~r~~   62 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKG--QKVRLWSYES   62 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTT--CCEEEECSCH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence            4579999999999999999999987  8999999863

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=92.40  E-value=0.073  Score=49.14  Aligned_cols=34  Identities=24%  Similarity=0.483  Sum_probs=29.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .+|+|||||.+|+-+|..|++                    .|. +|+|+++.+.
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~   36 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHK--------------------AGI-DNVILERQTP   36 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEECSSCH
T ss_pred             ccEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence            369999999999999999996                    576 5999998864

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=92.38  E-value=0.1  Score=49.49  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ...+|+|||+|.+|+-+|..|++                    .|. +|+|+++++.+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~--------------------~g~-~v~v~E~~~~~   51 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRS--------------------RGT-DAVLLESSARL   51 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHT--------------------TTC-CEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEEcCCCC
Confidence            56789999999999999999996                    565 69999988643

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=92.38  E-value=0.11  Score=48.11  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      ...+|+|||+|.+|+-+|..|.+                    .|. +|+|++++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~--------------------~G~-~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTR--------------------AGH-DVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH--------------------TSC-EEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecc
Confidence            56799999999999999999996                    565 69999988

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.37  E-value=0.13  Score=46.64  Aligned_cols=33  Identities=27%  Similarity=0.560  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .++|+|||+|..|...|..|.+.+  .+|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g--~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAG--EAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTT--CCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC--CEEEEEECh
Confidence            479999999999999999999987  899999863

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.35  E-value=0.16  Score=45.64  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|+|||+|..|...|..|.+.+.+.+|+++|.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            58999999999999999998853348999999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=92.33  E-value=0.1  Score=49.00  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ...|+|||||..|+-+|..|++                    .|.++|+|+++...
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~--------------------~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLAR--------------------RGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHH--------------------TTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--------------------cCCCcEEEEeCCCC
Confidence            3579999999999999999996                    67535999998754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=92.24  E-value=0.15  Score=45.81  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ++|+|||+|..|...|..|...+...+|+++|.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            5899999999999999999888621289999975

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=92.23  E-value=0.095  Score=50.51  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=30.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .+|+|||||..|+-+|..|++                    .|. +|+|+++++++
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~--------------------~G~-~V~vlE~~~~~   39 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHD--------------------SGL-NVVVLEARDRV   39 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHH--------------------TTC-CEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCCC
Confidence            579999999999999999996                    565 69999987644

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.20  E-value=0.12  Score=45.66  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .+++|+|||||.+|...+..|.+                    .|+ +|+|+...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~--------------------~Ga-~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMP--------------------TGC-KLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG--------------------GTC-EEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHh--------------------CCC-EEEEEcCC
Confidence            68999999999999999999996                    687 59999765

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=92.17  E-value=0.12  Score=48.90  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..+|+|||+|..|+-+|..|++                    .|. +|+++++++.
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~--------------------~G~-~V~vlE~~~~   45 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSV--------------------DGK-KVLHIDKQDH   45 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--------------------CCC-eEEEEeCCCC
Confidence            3579999999999999999996                    565 6999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=92.15  E-value=0.17  Score=43.75  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...++|.|||+|..|...|..|.+.+  ++|+++++++
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G--~~V~~~~r~~   52 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLG--HEVTIGTRDP   52 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCh
Confidence            35689999999999999999999987  8999999864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.12  E-value=0.16  Score=45.96  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +++||+|||+|..|..+|..|...+.-.+++++|.+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4579999999999999999999886223899999763

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.09  E-value=0.12  Score=46.41  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=28.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ++|+|||+|..|.+.|..|.+.+  .+|++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSG--EDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTS--CCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC--CeEEEEEcC
Confidence            68999999999999999999987  899999875

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=92.07  E-value=0.12  Score=48.96  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      -+|+|||||..|+-+|..|++                    .|. +|+|+++...
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~--------------------~G~-~V~vlE~~~~   40 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSR--------------------RGL-KILLVDSKPW   40 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSS--------------------SSC-CEEEECSSCG
T ss_pred             CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCC
Confidence            479999999999999999996                    676 5999999865

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=91.91  E-value=0.19  Score=45.34  Aligned_cols=34  Identities=26%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~   54 (334)
                      .++|+|||+|..|...|..|.+.+  + +|+++|.++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g--~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDN--LADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCc
Confidence            479999999999999999999986  6 899999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=91.89  E-value=0.18  Score=46.36  Aligned_cols=33  Identities=33%  Similarity=0.435  Sum_probs=30.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..+|+|+|+|.+|..++..++..|  .+|+++++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~  199 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDIN  199 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCC
Confidence            479999999999999999999997  799999876

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.89  E-value=0.17  Score=43.97  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..+|+|||+|..|..+|.+|.+.| -.+++|+|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~G-v~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAG-VGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcC-CCeEEEEcCCC
Confidence            479999999999999999999997 23899999874

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.88  E-value=0.19  Score=48.24  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=32.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|.|||+|..|+..|..|++.+++++|+++|+++
T Consensus         8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            3579999999999999999999985558999999864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=91.88  E-value=0.17  Score=48.52  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=31.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..|+|.|||+|..|+..|..|++.|  .+|+++|+++
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G--~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIG--HDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCC--CEEEEEECCH
Confidence            4589999999999999999999997  8999999864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=91.85  E-value=0.14  Score=46.26  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=28.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+|+|||||.+|+-+|..|++..                 ..|. +|+|++++.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~-----------------~~G~-~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQT-----------------SGPL-YLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC------------------CCE-EEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhc-----------------cCCc-eEEEEECCC
Confidence            37999999999999999998400                 0355 699999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=91.83  E-value=0.14  Score=46.34  Aligned_cols=35  Identities=29%  Similarity=0.205  Sum_probs=30.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...+|+|||+|..|..-|..++..|  ++|+++|..+
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G--~~V~l~D~~~   39 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGG--FRVKLYDIEP   39 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTT--CCEEEECSCH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCC--CeEEEEECCH
Confidence            3469999999999999999999997  9999999864

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=91.82  E-value=0.15  Score=48.76  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ...+|+|||+|..|+-+|..|++                    .|. +|+|+++++++
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~--------------------~g~-~v~v~E~~~~~   48 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKI--------------------HGL-NVTVFEAEGKA   48 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHT--------------------TSC-EEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEEeCCCC
Confidence            34789999999999999999996                    565 69999988654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=91.79  E-value=0.19  Score=48.14  Aligned_cols=36  Identities=22%  Similarity=0.114  Sum_probs=33.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhc-CCCC-eEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEA-QVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~-~~~~-~v~vie~~~~   55 (334)
                      ..++|.|||+|..|+..|..|++. |  + +|+++|+++.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G--~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPC--FEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTT--CCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCC--CCeEEEEECChh
Confidence            457999999999999999999999 7  8 9999998865

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.79  E-value=0.19  Score=39.13  Aligned_cols=22  Identities=14%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHcc
Q 019876          159 TDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .++++|+|+|.+|..+|..|.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~   27 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTA   27 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHH
Confidence            4789999999999999999986

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=91.77  E-value=0.19  Score=45.79  Aligned_cols=33  Identities=21%  Similarity=0.048  Sum_probs=29.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .++|.|||+|..|...|..|.+.+  .+|+++++.
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g--~~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCC
Confidence            479999999999999999999987  899999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.69  E-value=0.21  Score=45.33  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=30.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||+|..|.++|..|+..+.-.+++++|..
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            467999999999999999999988622389999875

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=91.62  E-value=0.29  Score=46.60  Aligned_cols=37  Identities=19%  Similarity=0.081  Sum_probs=32.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...++|.|||+|..|...|..+++.|  ++|+++|.++.
T Consensus        52 ~~i~kVaVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e   88 (460)
T 3k6j_A           52 YDVNSVAIIGGGTMGKAMAICFGLAG--IETFLVVRNEQ   88 (460)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECcHH
Confidence            34579999999999999999999997  99999998753

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=91.56  E-value=0.17  Score=46.95  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .+|+|||+|.+|+-+|..|++                    .|. +|+|+++++.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~--------------------~g~-~v~v~E~~~~   37 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAE--------------------KGH-QVHIIDQRDH   37 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--------------------TTC-EEEEEESSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEEecCC
Confidence            489999999999999999996                    454 6999988753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.52  E-value=0.19  Score=47.81  Aligned_cols=33  Identities=33%  Similarity=0.354  Sum_probs=30.9

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|.|||+|..|+..|..|++.|  .+|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G--~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELG--ANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcC--CEEEEEECCH
Confidence            69999999999999999999997  8999999874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.52  E-value=0.18  Score=50.35  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..+|+|||||.+|+-+|..|++                    .|. +|+|+++.+
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~--------------------~G~-~V~vlEk~~  305 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLR--------------------RGW-QVTLYCADE  305 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--------------------TTC-EEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeCCC
Confidence            3689999999999999999996                    676 699999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.51  E-value=0.19  Score=42.53  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|.|||+|..|...|..|.+.+  .+|++++++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g--~~V~~~~r~   60 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSG--FKVVVGSRN   60 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence            5679999999999999999999886  899999875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.48  E-value=0.24  Score=44.96  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=30.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~   54 (334)
                      +++|+|||+|..|...|..|+..+  . +|+++|.++
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g--~~~V~L~Di~~   48 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKD--LGDVYMFDIIE   48 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCH
Confidence            369999999999999999999886  5 899999864

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=91.45  E-value=0.15  Score=47.99  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .+|+|||+|..|+-+|..|++                    .|. +|+|+++++.
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~--------------------~g~-~v~v~E~~~~   39 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRK--------------------AGL-SVAVIEARDR   39 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEECCCC
Confidence            589999999999999999996                    565 5999988753

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.45  E-value=0.26  Score=44.44  Aligned_cols=48  Identities=19%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             ccccccccCC-CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876            7 WLSRSFTALS-SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus         7 ~~~~~~~~~~-~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+++++.... ...++|.|||.|..|.+.|..|++.|...+|+++++++
T Consensus        20 ~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           20 HMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             ---------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CcCcCCchhhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            4444433322 23479999999999999999999997222999998864

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=91.42  E-value=0.16  Score=49.11  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=30.6

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..|+|||||.+|+-+|..|++                    .|. +|+|+++....
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~--------------------~G~-~v~viEr~~~~   40 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLAR--------------------QGV-RVLVVERRPGL   40 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--------------------TTC-CEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCCC
Confidence            579999999999999999997                    677 59999998643

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.35  E-value=0.26  Score=44.59  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~   54 (334)
                      .++|+|||+|..|...|..|...+  . +|+++|.++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g--~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKN--LGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCH
Confidence            469999999999999999999886  5 799999764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=91.32  E-value=0.14  Score=45.51  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++|+|||+|..|...|..|.+.+  .+|+++++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g--~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSL--PHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHC--TTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCC--CeEEEEEecc
Confidence            68999999999999999999987  7999999874

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.29  E-value=0.29  Score=45.27  Aligned_cols=40  Identities=13%  Similarity=0.192  Sum_probs=34.0

Q ss_pred             cCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        14 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ......++|+|||+|..|..++..+++.|  +++++++..+.
T Consensus         9 ~~~~~~k~IlIlG~G~~g~~la~aa~~~G--~~vi~~d~~~~   48 (389)
T 3q2o_A            9 RIILPGKTIGIIGGGQLGRMMALAAKEMG--YKIAVLDPTKN   48 (389)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSTT
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCC
Confidence            33346689999999999999999999997  99999997643

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=91.29  E-value=0.12  Score=46.84  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=28.0

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC-----cceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-----IRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Vtiv~r~~  213 (334)
                      .|+|||||.+|+-+|..|++                    .|     ..+|+|+++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~--------------------~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHE--------------------RYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------HHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHH--------------------hccccCCCceEEEEECCC
Confidence            69999999999999999996                    44     14699999874

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.25  E-value=0.26  Score=44.68  Aligned_cols=35  Identities=20%  Similarity=0.162  Sum_probs=30.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~   54 (334)
                      +.++|+|||+|..|.+.|..|...+  . +++++|..+
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~--~~~v~L~Di~~   41 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKE--LGDVVLFDIAE   41 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCc
Confidence            4579999999999999999999886  5 999999764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=91.23  E-value=0.22  Score=44.01  Aligned_cols=33  Identities=30%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++|.|||.|..|...|..|.+.+  ++|+++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAG--CSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC--CeEEEEcCCH
Confidence            68999999999999999999997  8999999874

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=91.22  E-value=0.24  Score=44.23  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|.|||.|..|...|..|.+.|  ++|+++++++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAG--LSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEECCH
Confidence            4579999999999999999999987  8999998763

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.21  E-value=0.24  Score=45.73  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=30.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|+|+|..|..+|..++..|  ++|++++++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~  198 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMG--AQVTILDVN  198 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECC
Confidence            3589999999999999999999997  899999875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=91.17  E-value=0.27  Score=44.40  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=30.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~   53 (334)
                      ..++|+|||+|..|...|..++..+  . +++++|..
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g--~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKE--LADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEecc
Confidence            4579999999999999999999886  6 99999986

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.13  E-value=0.24  Score=45.84  Aligned_cols=34  Identities=32%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||+|..|..+|..++..|  ++|+++++.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~  200 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDIN  200 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCC
Confidence            4689999999999999999999987  899999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=91.12  E-value=0.13  Score=47.80  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC--CcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS--SIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vtiv~r~~  213 (334)
                      ..|+|||+|.+|+-+|..|++                    .  |. +|+|+++..
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~--------------------~~pG~-~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQ--------------------LAPGR-SLLLVEEGG   71 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------HCTTS-CEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHh--------------------cCCCC-eEEEEeCCC
Confidence            479999999999999999996                    5  65 599999864

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=91.11  E-value=0.16  Score=50.41  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=28.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      -.|+|||||..|+++|..+++                    .|. +|.|+++..
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr--------------------~G~-kVlLIEk~~   61 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAAR--------------------MGQ-QTLLLTHNI   61 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCG
T ss_pred             CCEEEECChHHHHHHHHHHHh--------------------CCC-CEEEEeecc
Confidence            479999999999999999996                    676 599999863

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=91.06  E-value=0.17  Score=49.30  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..|+|||+|.+|+-+|..|++                    .|. +|+|+++++..
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~--------------------~G~-~V~vlEr~~~~   61 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAH--------------------RQV-GHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSCSC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCCC
Confidence            479999999999999999996                    677 49999998644

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=91.06  E-value=0.24  Score=49.60  Aligned_cols=34  Identities=29%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ...|+|||||.+|+-+|..|++                    .|. +|+|+++.+
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~--------------------~G~-~V~vlEk~~  297 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQR--------------------RGA-VVTLYCADA  297 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHT--------------------TTC-CEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHH--------------------CCC-cEEEEeCCC
Confidence            3689999999999999999996                    676 599999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.00  E-value=0.17  Score=44.09  Aligned_cols=36  Identities=14%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+++|+|||+|.+|.++|..|++                    .|+.+++++.+..
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~--------------------~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLAS--------------------AGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHH--------------------HTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHH--------------------cCCCeEEEEcCCC
Confidence            45899999999999999999996                    7888899998864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=91.00  E-value=0.16  Score=48.42  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .+|+|||+|..|+-+|..|.+                    .|. +|+|+++++++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~--------------------~g~-~v~v~E~~~~~   74 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTV--------------------AGF-KTLLLEARDRI   74 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH--------------------TTC-CEEEECSSSBS
T ss_pred             CCEEEECCcHHHHHHHHHHHH--------------------CCC-CEEEEeCCCCC
Confidence            689999999999999999996                    565 69999987644

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=90.97  E-value=0.25  Score=44.29  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=28.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .|+|+|||+|..|...|..|. .+  .+|++++++
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g--~~V~~~~r~   33 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LY--HDVTVVTRR   33 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cC--CceEEEECC
Confidence            379999999999999999999 76  899999875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=90.96  E-value=0.24  Score=47.21  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|.|||.|..|...|..|++.+++.+|+++++++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            479999999999999999999984448999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.95  E-value=0.25  Score=39.15  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .++++|+|+|.+|..++..|.+                    .|. +|+++.+.+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~--------------------~g~-~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQ--------------------RGQ-NVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEECCC
Confidence            4789999999999999999986                    564 588888863

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.85  E-value=0.24  Score=38.02  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHcc
Q 019876          159 TDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +.+|+|+|+|.+|..+|..|.+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~   25 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSE   25 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh
Confidence            4689999999999999999986

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.84  E-value=0.28  Score=42.96  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +++|+|.|+|..|...+..|.+.+  ++|+++.+.+.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQG--HEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT--CCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcc
Confidence            578999999999999999999997  89999988643

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=90.79  E-value=0.16  Score=48.73  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=28.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      -.|+|||||.+|+-+|..|++                    .|. +|+|+++.+
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~--------------------~G~-~V~llE~~~   36 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAG--------------------RGL-SVLMLEAQD   36 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHh--------------------CCC-CEEEEECCC
Confidence            369999999999999999996                    676 599999864

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=90.79  E-value=0.21  Score=47.85  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..+|+|||+|.+|+-+|..|++                    .|..+|+|+++++.
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~--------------------~g~~~v~v~E~~~~   44 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTE--------------------LGYKNWHLYECNDT   44 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHH--------------------TTCCSEEEEESSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--------------------cCCCCEEEEeCCCC
Confidence            4689999999999999999986                    55346999988753

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=90.77  E-value=0.32  Score=42.87  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++++|||+|-+|-+++..|.+.|  .+|+|++|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G--~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG--LQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence            689999999999999999999997  8999998864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=90.76  E-value=0.17  Score=50.13  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=28.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      -.|+|||||..|+++|..+++                    .|. +|.|+++..
T Consensus        28 yDVIVIGgG~AGl~AAlalAr--------------------~G~-kVlLIEk~~   60 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAAR--------------------MGA-KTAMFVLNA   60 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCG
T ss_pred             CCEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEEecc
Confidence            479999999999999999996                    676 599999863

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.75  E-value=0.32  Score=44.06  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~   54 (334)
                      +.++|+|||+|..|.+.|..|...+  . +++++|..+
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~--~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQ--LGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCh
Confidence            3579999999999999999998876  4 999999764

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=90.75  E-value=0.27  Score=44.15  Aligned_cols=37  Identities=16%  Similarity=0.189  Sum_probs=30.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +.++|+|||+|..|...|..+...+...+++|+|.++
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            3579999999999999999998887223999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.72  E-value=0.27  Score=44.50  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .++|.|||+|..|...|..|.+.+  .+|+++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G--~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENG--EEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCC--CeEEEEeCC
Confidence            579999999999999999999987  899999875

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.70  E-value=0.22  Score=47.04  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|.|||+|..|...|..|++.|  .+|+++++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G--~~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSS   33 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCH
Confidence            58999999999999999999987  8999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=90.67  E-value=0.37  Score=45.50  Aligned_cols=35  Identities=26%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++-|||.|..|+..|..|++.|  ++|+++|.++.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G--~~V~~~D~~~~   45 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHG--VDVLGVDINQQ   45 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCC--CEEEEEECCHH
Confidence            468999999999999999999997  99999998754

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=90.65  E-value=0.19  Score=49.86  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=29.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      -.|+|||||..|+++|..|++                    .|. +|.|+++..
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr--------------------~G~-kVlLIEk~~   54 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVAR--------------------GGL-HCLLITSDL   54 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCG
T ss_pred             CCEEEECccHHHHHHHHHHHH--------------------CCC-cEEEEEecc
Confidence            589999999999999999996                    676 599999874

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=90.61  E-value=0.21  Score=46.72  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=28.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..+|+|||+|.+|+-+|..|++                    .|. +|+|+++++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~--------------------~g~-~v~v~E~~~   62 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLAS--------------------SGQ-RVLIVDRRP   62 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHH--------------------CCC-ceEEEeccC
Confidence            4589999999999999999986                    455 588888764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=90.60  E-value=0.25  Score=44.57  Aligned_cols=32  Identities=28%  Similarity=0.304  Sum_probs=29.0

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCC--eEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~--~v~vie~~   53 (334)
                      ++|+|||+|..|...|..|.+.+  .  +|+++|++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g--~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKG--FAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT--CCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEeCC
Confidence            58999999999999999999887  6  89999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=90.54  E-value=0.32  Score=42.78  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++++|+|+|-+|.++|..|.+.|  .+|+++++.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G--~~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEECC
Confidence            4579999999999999999999997  899999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.48  E-value=0.29  Score=44.13  Aligned_cols=35  Identities=20%  Similarity=0.410  Sum_probs=31.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|.|||.|..|...|..|.+.|  ++|+++++.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~   64 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAG--YALQVWNRTP   64 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTT--CEEEEECSCH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCC--CeEEEEcCCH
Confidence            4579999999999999999999987  8999998863

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=90.46  E-value=0.26  Score=44.35  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR   52 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~   52 (334)
                      |+|.|||+|..|...|..|.+.+  .+|+++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g--~~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC--CEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--CeEEEEEc
Confidence            58999999999999999999987  89999987

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.46  E-value=0.3  Score=42.70  Aligned_cols=34  Identities=12%  Similarity=-0.011  Sum_probs=30.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +++|+|.|+|..|-..+..|.+.+  ++|+++.+.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQG--WRIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGT--CEEEEEESCG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCC--CEEEEEEcCh
Confidence            479999999999999999999997  9999998864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.44  E-value=0.18  Score=39.56  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=29.4

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      +++|+|||+|.+|..++..|..                    .|.+ |+++.|..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~--------------------~g~~-v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSY--------------------PQYK-VTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCT--------------------TTCE-EEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--------------------CCCE-EEEEcCCH
Confidence            6899999999999999998885                    6776 99988863

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=90.44  E-value=0.31  Score=40.76  Aligned_cols=32  Identities=22%  Similarity=0.268  Sum_probs=29.1

Q ss_pred             CeEEEEC-CchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIG-aG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |+|+||| +|..|...|..|.+.+  .+|++++++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g--~~V~~~~r~   33 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence            5899999 9999999999999986  899999875

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=90.41  E-value=0.16  Score=48.11  Aligned_cols=35  Identities=23%  Similarity=0.179  Sum_probs=29.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC-cceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~Vtiv~r~~~  214 (334)
                      .+|+|||+|.+|+-+|..|++                    .| ..+|+|+++++.
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~--------------------~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAER--------------------AFPDLNITLLEAGER   40 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHH--------------------HCTTSEEEEECSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHH--------------------hCCCCCEEEEECCCC
Confidence            589999999999999999996                    45 136999998654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=90.39  E-value=0.2  Score=42.49  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=30.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEE-EcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDI-IDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~v-ie~~~   54 (334)
                      .+++|.|||+|..|...|..|.+.+  .+|++ +++++
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~g--~~V~~v~~r~~   57 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAAQ--IPAIIANSRGP   57 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHTT--CCEEEECTTCG
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCCH
Confidence            3579999999999999999999987  88988 77653

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=90.36  E-value=0.36  Score=43.47  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||+|..|.+.|..++..+...+|+++|.+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            457999999999999999999887633489999975

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=90.36  E-value=0.32  Score=43.57  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=30.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|.|||+|..|...|..|.+.+  .+|+++++++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g--~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMG--HTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence            478999999999999999999886  8999998763

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=90.36  E-value=0.42  Score=43.38  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||+|..|..+|..++..+--.+++++|..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            568999999999999999999988622289999975

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=90.33  E-value=0.22  Score=44.07  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=30.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++|.|||.|..|...|..|.+.+  ++|+++++++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G--~~V~~~dr~~   34 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAG--FDVTVWNRNP   34 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHT--CCEEEECSSG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCH
Confidence            58999999999999999999997  8999999874

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=90.32  E-value=0.35  Score=43.58  Aligned_cols=36  Identities=22%  Similarity=0.226  Sum_probs=30.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .+++|+|||+|..|..+|..|...+.-.+++++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            457999999999999999999887533489999865

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=90.27  E-value=0.31  Score=43.88  Aligned_cols=33  Identities=24%  Similarity=0.441  Sum_probs=28.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||+|..|...|..|.+.+  .+|+++ ++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G--~~V~l~-~~   50 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAG--HEVILI-AR   50 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTT--CEEEEE-CC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCC--CeEEEE-Ec
Confidence            4689999999999999999999987  899999 54

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=90.26  E-value=0.17  Score=47.20  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=28.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcC-CcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS-SIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vtiv~r~~~  214 (334)
                      ..+|+|||+|..|+-+|..|++                    . |. +|+|++++++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~--------------------~~g~-~v~v~E~~~~   42 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVAT--------------------QLDK-RVLVLERRPH   42 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHH--------------------HSCC-CEEEECSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--------------------hCCC-CEEEEeCCCC
Confidence            3579999999999999999986                    4 54 5888887753

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=90.25  E-value=0.41  Score=42.60  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             CCCeEEEEC-CchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIG-aG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|.||| +|..|.+.|..|.+.+  .+|+++++++
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G--~~V~~~~~~~   55 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASG--YPISILDRED   55 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCC--CeEEEEECCc
Confidence            346899999 9999999999999987  8999999764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=90.24  E-value=0.34  Score=43.31  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~   53 (334)
                      ..++++|||+|.+|..+|..|.+.+  . +|+|+++.
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G--~~~V~v~nR~  174 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTA--AERIDMANRT  174 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTT--CSEEEEECSS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCC--CCEEEEEeCC
Confidence            4679999999999999999999987  6 89999875

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=90.24  E-value=0.81  Score=44.26  Aligned_cols=72  Identities=13%  Similarity=0.068  Sum_probs=49.9

Q ss_pred             CCCeEEEECCchHHHHH-HHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           18 NPLRVCVVGSGPAGFYT-AEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~a-A~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      +.++|.+||.|-+||++ |..|.++|  ++|++.|....          +.          ..+.++..|+++..+..  
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G--~~V~~sD~~~~----------~~----------~~~~L~~~gi~~~~G~~--   73 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALG--HTVTGSDANIY----------PP----------MSTQLEQAGVTIEEGYL--   73 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCC----------TT----------HHHHHHHTTCEEEESCC--
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCC--CEEEEECCCCC----------cH----------HHHHHHHCCCEEECCCC--
Confidence            35799999999999985 77778887  99999998642          11          12234556888765532  


Q ss_pred             eEEecccceeccCeEEEeccC
Q 019876           97 SSVSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        97 ~~v~~~~~~~~yd~lIlATGs  117 (334)
                          .......+|.||+..|.
T Consensus        74 ----~~~~~~~~d~vV~Spgi   90 (524)
T 3hn7_A           74 ----IAHLQPAPDLVVVGNAM   90 (524)
T ss_dssp             ----GGGGCSCCSEEEECTTC
T ss_pred             ----HHHcCCCCCEEEECCCc
Confidence                11222358999999987

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=90.22  E-value=0.34  Score=43.93  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ...++|+|||+|..|.++|..|...+.-.+++++|..
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            3567999999999999999999988622389999874

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=90.21  E-value=0.42  Score=43.43  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ....++|+|||+|..|.+.|..|...+...+++++|..
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            44678999999999999999999887622389999875

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=90.16  E-value=0.32  Score=45.88  Aligned_cols=35  Identities=14%  Similarity=0.301  Sum_probs=30.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|.|||+|..|+..|..|++ +  .+|+++|+++.
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G--~~V~~~D~~~~   69 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-N--HEVVALDIVQA   69 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-T--SEEEEECSCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-C--CeEEEEecCHH
Confidence            45799999999999999999887 6  99999998754

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=90.13  E-value=0.27  Score=43.78  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|.|||.|..|...|..|.+.+  ++|+++++++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWP--GGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTST--TCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHH
Confidence            468999999999999999999997  89999998754

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=90.11  E-value=0.26  Score=45.36  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      +|+|||+|..|+-+|..|++                    .|. +|+|+++++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~--------------------~g~-~v~v~E~~~   34 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKK--------------------LNK-KVLVIEKRN   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGG--------------------GTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEEecCC
Confidence            68999999999999999996                    454 588888764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.10  E-value=0.36  Score=40.17  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=29.7

Q ss_pred             CeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|+|.|| |..|...+..|.+.+  ++|+++.+++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCc
Confidence            58999996 999999999999997  9999998863

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=90.06  E-value=0.24  Score=49.41  Aligned_cols=36  Identities=31%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .+++|+|||+|..|+-+|..|.+                    .|. +|+|++++++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~--------------------~g~-~v~~~e~~~~  141 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQS--------------------FGM-DVTLLEARDR  141 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHH--------------------TTC-EEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--------------------CCC-eEEEEecCCC
Confidence            56899999999999999999986                    565 6999998754

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=90.04  E-value=0.28  Score=45.77  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|.|||+|..|+..|..|.+ +  .+|+++++++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G--~~V~~~d~~~   32 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-Q--NEVTIVDILP   32 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T--SEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-C--CEEEEEECCH
Confidence            589999999999999999998 7  8999999864

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=90.04  E-value=0.25  Score=47.88  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..+|+|||||.+|+-+|..|++..                 ..|. +|+|+++..
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~-----------------~~G~-~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRAL-----------------QQQA-NITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC-----------------CSSC-EEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhc-----------------CCCC-EEEEECCCC
Confidence            368999999999999999998400                 0365 699999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1lqta1	216	c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA	4e-51
d1cjca1	225	c.3.1.1 (A:107-331) Adrenodoxin reductase of mitoc	6e-51
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	2e-28
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	1e-23
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	3e-09
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	4e-09
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	6e-07
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	5e-06
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	1e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	3e-04
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	3e-04
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	4e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	0.001
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.002
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	0.003
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	0.003
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.004

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  166 bits (422), Expect = 4e-51
 Identities = 85/215 (39%), Positives = 117/215 (54%), Gaps = 9/215 (4%)

Query: 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILL 179
           DR L IPGEDL G  +A +FV WYN HP  + +SPDL S   AV++G GNVALDVARILL
Sbjct: 1   DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILL 59

Query: 180 RPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239
              + LA TDIA +A  +L    I++V +VGRRGP+QAA T  ELRE+  +  + V I  
Sbjct: 60  TDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDP 119

Query: 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE 299
            + +   TDE+     ++ ++  ++L      A  +P  G R + F F   P       +
Sbjct: 120 AE-LDGITDEDAAAVGKVCKQNIKVLRGY---ADREPRPGHRRMVFRFLTSP----IEIK 171

Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
               V  +   +  L   G G+  A  TGE E+L 
Sbjct: 172 GKRKVERIVLGRNELVSDGSGRVAAKDTGEREELP 206

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  166 bits (422), Expect = 6e-51
 Identities = 92/219 (42%), Positives = 122/219 (55%), Gaps = 10/219 (4%)

Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           +AL IPGE+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL 
Sbjct: 2   QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLT 60

Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
           P + L  TDI   A  AL  S ++ V++VGRRGP+Q A T KELRE++ +      +   
Sbjct: 61  PPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPA 120

Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAA-----ASASSQPMLGQRELHFVFFRKPDSFL 295
           D       +   + +R ++R+ ELL + A        +++     R     FFR P    
Sbjct: 121 DF--LGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQV- 177

Query: 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD 334
             +      +G+    T L+G G     AV TG+ EDL 
Sbjct: 178 LPSPDGRRAAGIRLAVTRLEGIG-EATRAVPTGDVEDLP 215

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  107 bits (268), Expect = 2e-28
 Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 19  PLRVCVVGSGPAGFYTAEKTLKAHQEA-----QVDIIDRLPTPFGLVRSGVAPDHPETKI 73
           P  + +VGSGP+ F+ A   LKA          VD+++ LPTP+GLVRSGVAPDHP+ K 
Sbjct: 2   PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 61

Query: 74  VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
           +  QF +  +  R  FFGNV +G  V   EL + Y  V+ A GA+S              
Sbjct: 62  ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSRGVPTPGLPFDDQS 121

Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
            +        NG P+   +    +   T VI      A D    L++    L      + 
Sbjct: 122 GTIPNVGGRINGSPNEYVVGWIKRG-PTGVIGTNKKDAQDTVDTLIKN---LGNAKEGAE 177

Query: 194 AWTALEGSSIRKVYLVGRRGP 214
             +  E  + +    +  R P
Sbjct: 178 CKSFPEDHADQVADWLAARQP 198

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.0 bits (235), Expect = 1e-23
 Identities = 73/223 (32%), Positives = 103/223 (46%), Gaps = 1/223 (0%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
           ++CVVGSGPAGFYTA+  LK H  A VDI ++   PFGLVR GVAPDHPE K VIN F++
Sbjct: 3   QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 62

Query: 81  VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
             + +RC+F+GNV +G  V++ EL+  YH VVL+YGAE       P             +
Sbjct: 63  TARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNM 122

Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
                   G   S  +K   T VI      +    +ILL+  +              ++ 
Sbjct: 123 EGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSAFIKA 182

Query: 201 S-SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242
               R V+ V      +         +  G     +   ++ L
Sbjct: 183 LLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEML 225

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 53.6 bits (128), Expect = 3e-09
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 21/159 (13%)

Query: 17  SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVI 75
                + VVG+GPAG   A     A +  QV + D      G        P   E    +
Sbjct: 41  VQKKNLAVVGAGPAGLAFAINA--AARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETL 98

Query: 76  NQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135
             + R+++    +      L  +V+  +L+     ++         A GIP   L     
Sbjct: 99  RYYRRMIEVTGVTLK----LNHTVTADQLQAFDETIL---------ASGIPNRALAQPLI 145

Query: 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDV 174
                    G   G +++ +L     A+  G   +AL++
Sbjct: 146 DSGKTVHLIG---GCDVAMEL-DARRAIAQG-TRLALEI 179

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 53.2 bits (126), Expect = 4e-09
 Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 5/161 (3%)

Query: 17  SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVIN 76
           +   ++ ++G+GPA    A   L     + + I ++     GL  S +        +V  
Sbjct: 2   AYSAKIALLGAGPASISCAS-FLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNF 60

Query: 77  QFSRVVQHERCSFFGNVTLGSSVSLSELRQL-YHVVVLAYGAESDRALGIPGEDLIGVHS 135
           +   +         G     + ++L+ L++  Y    +  G           E L  +  
Sbjct: 61  EIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKF 120

Query: 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176
            R  +   +      +        D     G  N  ++   
Sbjct: 121 NRWDLPEVDPETMQTSEPWVFAGGDIV---GMANTTVESVN 158

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (113), Expect = 6e-07
 Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 20/185 (10%)

Query: 4   ARAWLSRSFTALSSN-PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62
           +RA  SR F  L       V +VG+G +G   A    K   + +V II+    P G    
Sbjct: 34  SRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93

Query: 63  GVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRA 122
           G       + +V+ + + +   E         L           +     L       + 
Sbjct: 94  G---GQLFSAMVMRKPAHLFLQE---------LEIPYEDEGDYVVVKHAALFISTVLSKV 141

Query: 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPT 182
           L +P   L       + V                      V            +  + P 
Sbjct: 142 LQLPNVKLFNATCVEDLVTRPPTEKGEVT-------VAGVVTNWTLVTQAHGTQCCMDPN 194

Query: 183 EELAT 187
                
Sbjct: 195 VIELA 199

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 11/193 (5%)

Query: 4   ARAWLSRSFTALSSNP-LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62
           +R    R  T + +     V VVG+G AG  +A   +  +   QV II++  +P G    
Sbjct: 17  SREMTRRYMTDMITYAETDVVVVGAGSAG-LSAAYEISKNPNVQVAIIEQSVSPGGGAWL 75

Query: 63  G-----VAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGA 117
           G              + +++   V   E+ ++          S    + L    V  + A
Sbjct: 76  GGQLFSAMIVRKPAHLFLDEIG-VAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNA 134

Query: 118 ESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177
            +   L + G  + GV +    V     +   ++           V+   G+     A  
Sbjct: 135 VAAEDLIVKGNRVGGVVTNWALV---AQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG 191

Query: 178 LLRPTEELATTDI 190
           + R         +
Sbjct: 192 VKRLKSIGMIDHV 204

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 12/60 (20%)

Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
           R   I G D   V S  +             L       +   I+G G +  D A  L +
Sbjct: 3   RTPPIDGIDHPKVLSYLDV------------LRDKAPVGNKVAIIGCGGIGFDTAMYLSQ 50

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 21  RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
           R+ ++G GPAG+  A     +H E  QV +ID        V     P     K  I    
Sbjct: 3   RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPS----KTFIASTG 58

Query: 80  RVVQHERCSFFGNVTLGSSVSL 101
              +  R    G         +
Sbjct: 59  LRTELRRAPHLGFHIDFDDAKI 80

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 24/169 (14%), Positives = 44/169 (26%), Gaps = 17/169 (10%)

Query: 16  SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVI 75
           + N   V +VG+GP+G   A           V + D      G +    A          
Sbjct: 46  TKNKDSVLIVGAGPSGSEAARV--LMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYH 103

Query: 76  NQFS----RVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
             +       +  +       +      +   L+     V++A GA S+  L    +   
Sbjct: 104 RDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGA-SECTLWNELKARE 162

Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
              +  +    Y                   +I         VAR +  
Sbjct: 163 SEWAENDIKGIYLIGDAEAPR----------LIADATFTGHRVAREIEE 201

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 123 LGIPGEDLIGVHSAREFVWWYN-----GHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177
            G+  +   G +++++F+         G     +  P ++     ++LG G+ A D A  
Sbjct: 8   QGLTQDQ--GFYTSKDFLPLVAKSSKAGMCACHSPLPSIR--GAVIVLGAGDTAFDCATS 63

Query: 178 LLR 180
            LR
Sbjct: 64  ALR 66

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
          RV VVG+G +G  +A K L       + I++      G +         
Sbjct: 2  RVIVVGAGMSG-ISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGIN 49

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH 68
          +SNP  V +VG+G AG   A     A    QV +++    P G VR+    + 
Sbjct: 27 TSNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRVRTYRNEEA 77

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56
          P+ + + G+G  G   A   L      +V +++     
Sbjct: 1  PIDILIAGAGIGGLSCA-LALHQAGIGKVTLLESSSEI 37

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59
          ++ ++G+GP+G  TA+  L      QV + +R  +P G+
Sbjct: 6  KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 44

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56
          +V V+GS   G+   E+ L  H +A++   ++    
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.95
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	99.94
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.82
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.8
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.78
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.76
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.55
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.45
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.42
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.38
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.35
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.33
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.33
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.32
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	99.28
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.26
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.23
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.23
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.23
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.22
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.21
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.2
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.18
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.18
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.18
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.15
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.13
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.12
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.11
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.11
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.1
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.1
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.09
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.09
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.08
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.08
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.08
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.07
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.06
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.06
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.06
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.05
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.04
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.04
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.04
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.04
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.0
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.99
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.98
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.98
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.97
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.97
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.96
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.96
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.94
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.91
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.91
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.91
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.9
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.86
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.86
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.86
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.84
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.83
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.82
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.8
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.77
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.76
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.71
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.7
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.7
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.7
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.69
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.69
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.66
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.63
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.63
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.62
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.62
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.62
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.59
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.57
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.57
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.57
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.56
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.55
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.55
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.54
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.46
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.42
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.36
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.31
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.31
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.26
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.25
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.23
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.19
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.07
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.07
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.02
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.99
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.99
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.98
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.98
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	97.81
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.79
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.79
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.78
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.77
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.76
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.59
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.58
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.55
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.53
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.53
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.5
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.5
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.45
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.26
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.24
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.2
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.19
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.18
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.07
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.06
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.02
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.0
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.93
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.9
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	96.88
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.85
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.8
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.8
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.8
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.73
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.65
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	96.64
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.63
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.56
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.53
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.53
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.52
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.52
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.47
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.46
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.43
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.42
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.32
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.32
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.32
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.27
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.26
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.23
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.23
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.22
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.22
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.15
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.15
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.15
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.14
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.99
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.92
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.83
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.81
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.7
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	95.67
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	95.65
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.61
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.6
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.57
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.54
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.53
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.5
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.36
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.34
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.33
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.27
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.1
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.08
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.06
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.05
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.0
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.93
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	94.92
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.78
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.71
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.68
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.65
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.61
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.6
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.55
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	94.55
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.54
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.49
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.47
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.41
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.4
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.34
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.34
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.31
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.29
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.28
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.26
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.25
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.22
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.21
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.1
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.09
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.08
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.92
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.78
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.76
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	93.73
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.53
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.42
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	93.39
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.34
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.34
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.33
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.1
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.96
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.9
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.86
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.85
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.73
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.52
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	92.34
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.34
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.24
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.16
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	92.08
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	91.93
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	91.92
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.89
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.84
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	91.73
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.66
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	91.66
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	91.57
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.45
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.28
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.24
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.23
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.21
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.17
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.17
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.16
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.13
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.11
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.07
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	91.03
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	90.96
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	90.94
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.84
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.74
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.69
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	90.64
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.55
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.53
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.5
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.49
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.47
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.42
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.41
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	90.41
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.23
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.21
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.15
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	90.1
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.03
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	90.02
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.97
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	89.97
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	89.94
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	89.78
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	89.72
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.67
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.66
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	89.65
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.61
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.54
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	89.47
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.29
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.11
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.91
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.74
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.55
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.37
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.36
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	88.34
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.34
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.33
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	88.28
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.22
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.21
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.07
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	87.97
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.9
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.78
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	87.68
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	87.62
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	87.51
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	87.48
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	87.45
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.32
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.1
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.86
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	86.85
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	86.79
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	86.75
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	86.7
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	86.63
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.58
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	86.39
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	86.38
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	85.99
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	85.9
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	85.89
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.84
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	85.65
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	85.48
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.24
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.19
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	84.87
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	84.82
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	84.76
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	84.64
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	84.47
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	84.44
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	84.42
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	84.27
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	84.2
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	84.18
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	84.14
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	84.13
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	84.11
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	84.08
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	84.07
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	83.88
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	83.81
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	83.46
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.43
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	83.41
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	83.3
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	83.26
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	83.17
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	83.0
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	82.65
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	82.61
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	82.61
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	82.49
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	82.39
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.28
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	82.16
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	82.1
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.92
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.86
d1b74a1	105	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	81.85
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	81.79
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	81.71
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	81.32
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	81.19
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	80.96
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.64
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.53
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.49
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	80.15
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	80.06

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=2.6e-27  Score=204.92  Aligned_cols=205  Identities=40%  Similarity=0.602  Sum_probs=176.1

Q ss_pred             CCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhc
Q 019876          121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG  200 (334)
Q Consensus       121 ~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~  200 (334)
                      +.++|||.+++||+.+.+|+.||+.++++.....++ .+++|+|||+|++|+|+|+.|++...++..||++.++++.+.+
T Consensus         2 R~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~-~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r   80 (216)
T d1lqta1           2 RMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP   80 (216)
T ss_dssp             CCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCC-CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred             CCCCCCCCCCCCcEeHHHHHHHHhCCccccccCccc-cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhh
Confidence            578999999999999999999999888776655544 6899999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCc
Q 019876          201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQ  280 (334)
Q Consensus       201 ~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (334)
                      .++++|++++||++..++|+.+|++++++.+++.+.+++..++..... ......+..++..+++.+...   .......
T Consensus        81 ~~~~~V~iv~RRg~~~~~ft~~Elre~~~l~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  156 (216)
T d1lqta1          81 RGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDE-DAAAVGKVCKQNIKVLRGYAD---REPRPGH  156 (216)
T ss_dssp             CCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHH-HHHHHCHHHHHHHHHHHHHHT---CC-CTTS
T ss_pred             cCCceEEEEEECChHhCCCChhhhhhhcccCCCCccCCHHHccchhhh-hhhhhccchhHHHHHHHHhhh---hccccCc
Confidence            999999999999999999999999999999999999998887644432 222345666666666665543   3445667


Q ss_pred             eEEEEEeccccceeeccccCCCCeeEEEEEEeeeecCCCCcceeecCCceEeCC
Q 019876          281 RELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD  334 (334)
Q Consensus       281 ~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (334)
                      +.+.|++...+.++.  +  +++++++++..+++..+++|+.+++++|++++|+
T Consensus       157 ~~~~~~~~~~~~~~~--~--~~~v~~l~~~~~~~~~d~~g~~~~~~~g~~~~i~  206 (216)
T d1lqta1         157 RRMVFRFLTSPIEIK--G--KRKVERIVLGRNELVSDGSGRVAAKDTGEREELP  206 (216)
T ss_dssp             EEEEEECSEEEEEEE--C--SSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEE
T ss_pred             ceeeeeecccccccc--c--cCceeEEEEEEEEEeeCCCCCeeeecCCcEEEEE
Confidence            889999999999997  6  7899999999999988889999999999988763

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=6.6e-26  Score=197.14  Aligned_cols=208  Identities=44%  Similarity=0.687  Sum_probs=169.1

Q ss_pred             CCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhc
Q 019876          121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG  200 (334)
Q Consensus       121 ~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~  200 (334)
                      +.++|||.+++||+.+.+|+.||+.++++.....++ .+++|+|||+|++|+|+|+.|.+.+.++..||++.++++.++.
T Consensus         2 R~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~-~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~   80 (225)
T d1cjca1           2 QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ   80 (225)
T ss_dssp             CCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCT-TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred             CCCCCCCCCCCCcEeHHHHHHHHhCCccccccCccc-cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc
Confidence            578999999999999999999999988876665555 6899999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCC-----C
Q 019876          201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASS-----Q  275 (334)
Q Consensus       201 ~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  275 (334)
                      .++++|++++||++..++|+++|++++++..++.+.+.+..+....  .......+..++..+.+.+...+...     .
T Consensus        81 ~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (225)
T d1cjca1          81 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQ--DRIKEAARPRKRLMELLLRTATEKPGVEEAAR  158 (225)
T ss_dssp             CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHH--HHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             cCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccch--hhhhhhhhHHHHHHHHHHHHHHhccccccccc
Confidence            9999999999999999999999999999999999999887765322  22224466667777766555432100     0


Q ss_pred             CCCCceEEEEEeccccceeeccccCC-CCeeEEEEEEeeeecCCCCcceeecCCceEeCC
Q 019876          276 PMLGQRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLD  334 (334)
Q Consensus       276 ~~~~~~gv~~~~~~~~~~i~~~~~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (334)
                      .....++|+|+|+..|++|.  ++++ ++|++|++..+++..+ .++.+.+++|++++++
T Consensus       159 ~~~~~~~i~~~f~~~p~~i~--~~~~g~~v~~v~~~~~~~~~~-~~~~~~~~tg~~~~ip  215 (225)
T d1cjca1         159 RASASRAWGLRFFRSPQQVL--PSPDGRRAAGIRLAVTRLEGI-GEATRAVPTGDVEDLP  215 (225)
T ss_dssp             HHTCSEEEEEECSEEEEEEE--ECTTSSSEEEEEEEEEEEESS-GGGCEEEEEEEEEEEE
T ss_pred             ccccccceEEEeeccccccc--ccCCCCeEEEEEEEEeEECCC-CCCCcccCCCcEEEEE
Confidence            12346899999999999998  5333 4899999999988743 3444567889988763

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.9e-21  Score=162.10  Aligned_cols=122  Identities=25%  Similarity=0.330  Sum_probs=104.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc-cCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~-~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      .++++|+|||||||||+||.+|++++  ++|+|||+.+.+||.+.++ ..|++....++.+++.++++..++++++++.+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G--~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~V  118 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV  118 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhc--cceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEE
Confidence            46799999999999999999999997  9999999999999998763 45888888899999999999999999998876


Q ss_pred             ceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHH
Q 019876           96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDV  174 (334)
Q Consensus        96 ~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~  174 (334)
                      +.     +....||+||+|||+ .|+.+++||.+                            .+++++|||+|++++|+
T Consensus       119 t~-----~~~~~~d~vilAtG~-~~~~~~~pg~~----------------------------~g~~v~vigggd~a~~~  163 (179)
T d1ps9a3         119 TA-----DQLQAFDETILASGI-PNRALAQPLID----------------------------SGKTVHLIGGCDVAMEL  163 (179)
T ss_dssp             CS-----SSSCCSSEEEECCCE-ECCTTHHHHHT----------------------------TTCCEEECGGGTCCSSC
T ss_pred             cc-----cccccceeEEEeecC-CCcccccchhc----------------------------cCCEEEEECCcHhhhhc
Confidence            42     234589999999999 57777666542                            47899999999999986

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=3.3e-21  Score=167.49  Aligned_cols=160  Identities=36%  Similarity=0.553  Sum_probs=120.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcC-----CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAH-----QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~-----~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      +++|+|||||||||+||.+|+++|     .+++|+|||+.+.+||++++++.|.+...+.+......++...++++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            469999999999999999999986     346899999999999999999988888888888888888899999999999


Q ss_pred             EEceEEecccceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHH
Q 019876           94 TLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALD  173 (334)
Q Consensus        94 ~v~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e  173 (334)
                      .++..+..++....||++++|||+. +..+.++|.+...+.....+...................+++++|+|+|+.+++
T Consensus        82 ~v~~~~~~~~~~~~~~~v~~atGa~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d  160 (239)
T d1lqta2          82 VVGEHVQPGELSERYDAVIYAVGAQ-SRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQD  160 (239)
T ss_dssp             CBTTTBCHHHHHHHSSEEEECCCCC-EECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHH
T ss_pred             EeccccchhhhhccccceeeecCCC-ccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHH
Confidence            8877666666667899999999995 566667776544444332222211111100000001124678999999999999


Q ss_pred             HHHHHc
Q 019876          174 VARILL  179 (334)
Q Consensus       174 ~A~~L~  179 (334)
                      ++..+.
T Consensus       161 ~a~~~v  166 (239)
T d1lqta2         161 TVDTLI  166 (239)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            997655

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.78  E-value=2.2e-21  Score=169.11  Aligned_cols=164  Identities=15%  Similarity=0.107  Sum_probs=107.3

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc-ccCCCCcchhHHHHHHHHHhhc---CCc--EE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQH---ERC--SF   89 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~-~~~p~~~~~~~~~~~~~~~~~~---~~i--~~   89 (334)
                      ....++|+||||||||++||..|++.+  ++|+|||+++.+||.+.+ ...+.+........+....+..   .++  .+
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G--~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQL  123 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEE
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhc--cceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeeee
Confidence            456799999999999999999999997  999999999999998865 3335554444443333333322   122  22


Q ss_pred             EeCeEEceEEeccc-ceeccCeEEEeccCCCCCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCC
Q 019876           90 FGNVTLGSSVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG  168 (334)
Q Consensus        90 ~~~~~v~~~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G  168 (334)
                      ..+..   .++..+ .+..||+||+|||+ .+..+.+++.+..+......       ...   .......+++|+|||+|
T Consensus       124 ~~~~~---~~~~~~~~~~~~d~vviAtG~-~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~vvViGgG  189 (233)
T d1djqa3         124 ALGQK---PMTADDVLQYGADKVIIATGA-SECTLWNELKARESEWAEND-------IKG---IYLIGDAEAPRLIADAT  189 (233)
T ss_dssp             ECSCC---CCCHHHHHTSCCSEEEECCCE-ECCHHHHHHHHTTHHHHHTT-------CCE---EEECGGGTSCCCHHHHH
T ss_pred             ecccc---cccchhhhhhccceeeeccCC-Ccccccccccccccccchhh-------hhh---hhhccccCCceeEecCc
Confidence            21111   112222 24589999999999 46655555443332222111       100   00111257899999999


Q ss_pred             HHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       169 ~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                      ++|+|+|..|++                    .+. +|++++|++.+.
T Consensus       190 ~~g~e~A~~l~~--------------------~g~-~Vtli~r~~~~~  216 (233)
T d1djqa3         190 FTGHRVAREIEE--------------------ANP-QIAIPYKRETIA  216 (233)
T ss_dssp             HHHHHHHHTTTS--------------------SCT-TSCCCCCCCCCC
T ss_pred             hHHHHHHHHHHh--------------------cCC-ceEEEEeccccc
Confidence            999999999996                    565 599999998764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=7.8e-20  Score=158.44  Aligned_cols=115  Identities=51%  Similarity=0.877  Sum_probs=97.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV   99 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v   99 (334)
                      .||+||||||||++||.+|++.+.+++|+|||+.+.+||++++++.+.+...+.+..+....+...+++++.++.++.++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   81 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDV   81 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTTTB
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCccc
Confidence            59999999999999999999887678999999999999999999877777777888888888899999999999888777


Q ss_pred             ecccceeccCeEEEeccCCCCCCCCCCCccCCCcc
Q 019876          100 SLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVH  134 (334)
Q Consensus       100 ~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~~v~  134 (334)
                      +..++...||+|++|||+..+..+++++....++.
T Consensus        82 ~~~~l~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~  116 (230)
T d1cjca2          82 TVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKL  116 (230)
T ss_dssp             CHHHHHHHSSEEEECCCCCEECCCCCTTSCCBTTT
T ss_pred             cHHHHHhhhceEEEEeecccccccccccccccccc
Confidence            76666668999999999965566677776644443

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.9e-16  Score=135.42  Aligned_cols=151  Identities=11%  Similarity=0.164  Sum_probs=95.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCcc--------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPE--------------------------   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~~--------------------------   70 (334)
                      ++++|+||||||||++||.++++.|  .+|+|||++. +||.| +.++.|.+..                          
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G--~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~   77 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYG--QKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF   77 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC--CEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence            3579999999999999999999997  9999999964 66654 3344332211                          


Q ss_pred             -hhH-----------HHHHHHHHhhcCCcEEEeCeEEc---eEEecccceeccCeEEEeccCCCCCCCCCCCccCC----
Q 019876           71 -TKI-----------VINQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI----  131 (334)
Q Consensus        71 -~~~-----------~~~~~~~~~~~~~i~~~~~~~v~---~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~~~----  131 (334)
                       ...           +......++.+.+|++.......   ...........++.+++|||+ .|..|++|+.+.-    
T Consensus        78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~-~p~ip~ip~~~~l~l~~  156 (217)
T d1gesa1          78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGG-RPSHPREPANDNINLEA  156 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCE-EECCCEEESCTTSCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCc-cccCCCCCCcCCccccc
Confidence             011           11122334556678776554321   123333445689999999999 5888888876522    


Q ss_pred             -CccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          132 -GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       132 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                       ++.+.....   -...++.    . ...++|.|||+|.+|+|+|..+.+
T Consensus       157 ~gv~~~~~~~---i~~d~~~----~-t~~~~i~~iG~g~~g~ela~~~~~  198 (217)
T d1gesa1         157 AGVKTNEKGY---IVVDKYQ----N-TNIEGIYAVGDNTGAVELTPVAVA  198 (217)
T ss_dssp             HTCCBCTTSC---BCCCTTS----B-CSSTTEEECSGGGTSCCCHHHHHH
T ss_pred             ccEEEcCCcc---EeeCchh----c-cCCCcEEEECCCccHHHHHHHHHH
Confidence             222211100   0000000    0 135689999999999999988775

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.45  E-value=1.4e-13  Score=125.13  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=77.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccC--------------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA--------------------------------   65 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~--------------------------------   65 (334)
                      ..++|+|||||+||++||.+|++.+.+.+|+|||+++.+||.|.+.-.                                
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   82 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   82 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence            467999999999999999999887645799999999999998754110                                


Q ss_pred             ------------------------CCCcchhHHHHHHHHHhhcCCcEEEeCeEEce--------EEecccc-------ee
Q 019876           66 ------------------------PDHPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-------RQ  106 (334)
Q Consensus        66 ------------------------p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~v~~~~~-------~~  106 (334)
                                              +.++...++..++..+.+..+..+++++.|..        .|++.+.       ..
T Consensus        83 y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~  162 (335)
T d2gv8a1          83 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKD  162 (335)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEE
T ss_pred             chhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEE
Confidence                                    11122345667777777777777888876631        2333221       13


Q ss_pred             ccCeEEEeccCCC-CCCCCCCC
Q 019876          107 LYHVVVLAYGAES-DRALGIPG  127 (334)
Q Consensus       107 ~yd~lIlATGs~~-p~~~~ipG  127 (334)
                      .||+||+|||... |+.|.+++
T Consensus       163 ~~d~VI~AtG~~s~p~~~~~~~  184 (335)
T d2gv8a1         163 IFDAVSICNGHYEVPYTGYLYS  184 (335)
T ss_dssp             EESEEEECCCSSSSBCCCBCCC
T ss_pred             EeeEEEEcccccccceeccccc
Confidence            5999999999754 66665544

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.42  E-value=1.3e-14  Score=127.38  Aligned_cols=134  Identities=13%  Similarity=0.240  Sum_probs=80.1

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCCcch-------------------------h-
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPET-------------------------K-   72 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~~~~-------------------------~-   72 (334)
                      ++++||||||||+.||.++++.|  .+|+|+|+.. +||. +++||.|.+.+.                         . 
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G--~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~   78 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHN--AKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPL   78 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhh
Confidence            68999999999999999999997  9999999975 5554 455665532110                         1 


Q ss_pred             ----------HHHHHHHHHhhcCCcEEEeCeEE--c-eEEec--------------ccceeccCeEEEeccCCCCC--CC
Q 019876           73 ----------IVINQFSRVVQHERCSFFGNVTL--G-SSVSL--------------SELRQLYHVVVLAYGAESDR--AL  123 (334)
Q Consensus        73 ----------~~~~~~~~~~~~~~i~~~~~~~v--~-~~v~~--------------~~~~~~yd~lIlATGs~~p~--~~  123 (334)
                                .+...+...++..+|+++.+...  + .++..              .+..+++|++|||||+ .|.  .+
T Consensus        79 ~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs-~P~~~~~  157 (259)
T d1onfa1          79 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGN-KPVGRSP  157 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCC-CBCCBCC
T ss_pred             HHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCC-CCccccc
Confidence                      11122344566778988766421  1 11111              1223689999999999 463  23


Q ss_pred             CCCC--ccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHH
Q 019876          124 GIPG--EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVA  171 (334)
Q Consensus       124 ~ipG--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g  171 (334)
                      .+|+  .+..++++...++.              +....+..|+|+|.+|
T Consensus       158 ~~~~~~l~~~~i~ts~~~~~--------------~d~~~~t~Vig~gaiG  193 (259)
T d1onfa1         158 DTENLKLEKLNVETNNNYIV--------------VDENQRTSVNNIYAVG  193 (259)
T ss_dssp             TTTTSSCTTTTCCBSSSCEE--------------ECTTCBCSSSSEEECS
T ss_pred             cccccccccceeeecccccc--------------cccCCceeEeeEEEEE
Confidence            3444  44556666544331              1122345677887766

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.38  E-value=1.4e-12  Score=101.22  Aligned_cols=116  Identities=18%  Similarity=0.288  Sum_probs=79.9

Q ss_pred             CCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcc
Q 019876          125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR  204 (334)
Q Consensus       125 ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (334)
                      |||.+.+|+++.+.+..... ..+..    .-..+++|+|||||++|+|+|..|++                    .|. 
T Consensus         1 IPG~d~~~v~~~~~~~da~~-i~~~~----~~~~~k~vvViGgG~iG~E~A~~l~~--------------------~g~-   54 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIK-LKQKT----VDPEVNNVVVIGSGYIGIEAAEAFAK--------------------AGK-   54 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHH-HHHHH----TCTTCCEEEEECCSHHHHHHHHHHHH--------------------TTC-
T ss_pred             CcCCCCCCeEEeCCHHHHHH-HHHHh----hccCCCEEEEECChHHHHHHHHHhhc--------------------cce-
Confidence            68999999998766542211 00000    01257899999999999999999996                    675 


Q ss_pred             eEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEE
Q 019876          205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH  284 (334)
Q Consensus       205 ~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  284 (334)
                      +||++++.+++++++.++++.                                     +.+++.+.         ++||+
T Consensus        55 ~Vtlie~~~~~l~~~~d~~~~-------------------------------------~~~~~~l~---------~~gv~   88 (123)
T d1nhpa2          55 KVTVIDILDRPLGVYLDKEFT-------------------------------------DVLTEEME---------ANNIT   88 (123)
T ss_dssp             EEEEEESSSSTTTTTCCHHHH-------------------------------------HHHHHHHH---------TTTEE
T ss_pred             EEEEEEecCcccccccchhhH-------------------------------------HHHHHHhh---------cCCeE
Confidence            699999999886554443332                                     23344443         67999


Q ss_pred             EEeccccceeeccccCCCCeeEEEEEEeeeec
Q 019876          285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKG  316 (334)
Q Consensus       285 ~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~  316 (334)
                      +++++.+++|.  +  +++++.+..+..+++.
T Consensus        89 ~~~~~~v~~i~--~--~~~~~~v~~dg~~i~~  116 (123)
T d1nhpa2          89 IATGETVERYE--G--DGRVQKVVTDKNAYDA  116 (123)
T ss_dssp             EEESCCEEEEE--C--SSBCCEEEESSCEEEC
T ss_pred             EEeCceEEEEE--c--CCCEEEEEeCCCEEEC
Confidence            99999999998  6  5677777444444443

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=7.7e-14  Score=116.59  Aligned_cols=97  Identities=18%  Similarity=0.260  Sum_probs=71.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ++||+||||||+||+||.+|+++|  + +|+|||+.+.++|.+.+.. +...................+..+.....++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G--~~~V~v~E~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLG--YSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLSE   80 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCBST
T ss_pred             CCEEEEECChHHHHHHHHHHHHCC--CCeEEEEEecCcccchhhhhc-cccccccccccchhhhhhccceeEEeeEEecc
Confidence            579999999999999999999997  7 5999999999999887765 44444444555555555666777777766643


Q ss_pred             EE-ecccc-eeccCeEEEeccCC
Q 019876           98 SV-SLSEL-RQLYHVVVLAYGAE  118 (334)
Q Consensus        98 ~v-~~~~~-~~~yd~lIlATGs~  118 (334)
                      .. ..... ...++++++|+|..
T Consensus        81 ~~~~~~~~~~~~~~~~~ia~g~~  103 (196)
T d1gtea4          81 NEITLNTLKEEGYKAAFIGIGLP  103 (196)
T ss_dssp             TSBCHHHHHHTTCCEEEECCCCC
T ss_pred             ceeeeehhhccccceeeEEeccc
Confidence            21 12222 24699999999984

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.33  E-value=1.8e-12  Score=99.64  Aligned_cols=102  Identities=17%  Similarity=0.338  Sum_probs=71.7

Q ss_pred             CCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC
Q 019876          123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS  202 (334)
Q Consensus       123 ~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~  202 (334)
                      |+|||.+  .++++.+++.              +..+++|+|||||++|+|+|..|++                    .|
T Consensus         2 P~IpG~e--~~~ts~~~~~--------------l~~p~~v~IiGgG~iG~E~A~~l~~--------------------~g   45 (117)
T d1onfa2           2 PPVKGIE--NTISSDEFFN--------------IKESKKIGIVGSGYIAVELINVIKR--------------------LG   45 (117)
T ss_dssp             CSCTTGG--GCEEHHHHTT--------------CCCCSEEEEECCSHHHHHHHHHHHT--------------------TT
T ss_pred             cccCCHh--HcCchhHHhc--------------cCCCCEEEEECCchHHHHHHHHHHh--------------------cc
Confidence            6889975  4566655441              2246899999999999999999996                    67


Q ss_pred             cceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceE
Q 019876          203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE  282 (334)
Q Consensus       203 ~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  282 (334)
                      . +||+++|++++++.|+ +++++.                                     +++.+.         ++|
T Consensus        46 ~-~Vtlv~~~~~il~~~d-~~~~~~-------------------------------------~~~~l~---------~~g   77 (117)
T d1onfa2          46 I-DSYIFARGNRILRKFD-ESVINV-------------------------------------LENDMK---------KNN   77 (117)
T ss_dssp             C-EEEEECSSSSSCTTSC-HHHHHH-------------------------------------HHHHHH---------HTT
T ss_pred             c-cceeeehhcccccccc-HHHHHH-------------------------------------HHHHHH---------hCC
Confidence            6 6999999998875553 333322                                     233332         569


Q ss_pred             EEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          283 LHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       283 v~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                      |+|++++.+++|.  ...++.+ .|.+.+
T Consensus        78 V~i~~~~~v~~i~--~~~~~~~-~v~~~~  103 (117)
T d1onfa2          78 INIVTFADVVEIK--KVSDKNL-SIHLSD  103 (117)
T ss_dssp             CEEECSCCEEEEE--ESSTTCE-EEEETT
T ss_pred             CEEEECCEEEEEE--EcCCCeE-EEEECC
Confidence            9999999999997  3224433 455554

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=5.5e-12  Score=98.20  Aligned_cols=103  Identities=19%  Similarity=0.318  Sum_probs=76.4

Q ss_pred             CCCCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHH
Q 019876          121 RALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA  197 (334)
Q Consensus       121 ~~~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~  197 (334)
                      +.+++||++   ..||+++.....             .++++|+|+|||+|++|+|.|..|++                 
T Consensus         2 R~L~ipge~~~~gkGV~yca~cD~-------------~~~~gk~V~VvGgG~sA~~~A~~L~~-----------------   51 (126)
T d1fl2a2           2 RNMNVPGEDQYRTKGVTYCPHCDG-------------PLFKGKRVAVIGGGNSGVEAAIDLAG-----------------   51 (126)
T ss_dssp             CCCCCTTTTTTBTTTEESCHHHHG-------------GGGBTCEEEEECCSHHHHHHHHHHHT-----------------
T ss_pred             CcCCCCCHHHhcCCCEEEEEecCh-------------hhcCCceEEEEeCCHHHHHHHHhhhc-----------------
Confidence            568899986   367776543211             24589999999999999999999996                 


Q ss_pred             HhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCC
Q 019876          198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM  277 (334)
Q Consensus       198 ~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (334)
                          -+++||+++|++.+..                              .              +.+.+.+.       
T Consensus        52 ----~a~~V~li~r~~~~~~------------------------------~--------------~~~~~~~~-------   76 (126)
T d1fl2a2          52 ----IVEHVTLLEFAPEMKA------------------------------D--------------QVLQDKLR-------   76 (126)
T ss_dssp             ----TBSEEEEECSSSSCCS------------------------------C--------------HHHHHHHH-------
T ss_pred             ----cCCceEEEeccccccc------------------------------c--------------cccccccc-------
Confidence                5789999999986520                              0              01122222       


Q ss_pred             CCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          278 LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       278 ~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                       ...+|++++++.+++|.  | +++++++|++.+.
T Consensus        77 -~~~~I~v~~~~~v~~i~--G-~~~~v~~v~l~~~  107 (126)
T d1fl2a2          77 -SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRDR  107 (126)
T ss_dssp             -TCTTEEEESSEEEEEEE--E-SSSSEEEEEEEET
T ss_pred             -cccceeEEcCcceEEEE--c-cccceeeEEEEEC
Confidence             24579999999999999  8 3568999999874

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.32  E-value=8.5e-13  Score=118.15  Aligned_cols=112  Identities=16%  Similarity=0.133  Sum_probs=82.6

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCC---------------------------C
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------H   68 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~---------------------------~   68 (334)
                      ++...+|+|||||++||++|.+|++.+  .+++|||+.+.+||.|.+..+|+                           +
T Consensus         4 p~~~~dV~IIGAG~sGl~~a~~L~~~G--~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~   81 (298)
T d1w4xa1           4 PPEEVDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERY   81 (298)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCC--CCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCcccc
Confidence            345679999999999999999999997  89999999999999885321111                           1


Q ss_pred             cchhHHHHHHHHHhhcCCc--EEEeCeEEce----------EEecccc-eeccCeEEEeccCC-CCCCCCCCCcc
Q 019876           69 PETKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSEL-RQLYHVVVLAYGAE-SDRALGIPGED  129 (334)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~----------~v~~~~~-~~~yd~lIlATGs~-~p~~~~ipG~~  129 (334)
                      +..+++..++..+.+++++  .+.+++.|..          .|...+. ...+|.||+|||.. .|..|.+|+.+
T Consensus        82 p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~  156 (298)
T d1w4xa1          82 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKID  156 (298)
T ss_dssp             CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSE
T ss_pred             CccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccc
Confidence            2234678888888888887  4777876632          2333333 35799999999963 36666677665

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.28  E-value=1.1e-11  Score=99.67  Aligned_cols=127  Identities=23%  Similarity=0.349  Sum_probs=86.9

Q ss_pred             CCCccchhhHHHHhcC--CCCCCCCCCCC-CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceE
Q 019876          130 LIGVHSAREFVWWYNG--HPDGKNLSPDL-KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV  206 (334)
Q Consensus       130 ~~~v~~~~~~~~~~~~--~~~~~~~~~~~-~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V  206 (334)
                      ..|++.+.+|+.+.+.  ..++......+ +.+++|+|||||++|+|+|..+.+                    +|+++|
T Consensus        13 ~~G~~~a~dfL~~~~~~~~~~~~~~~~~~p~~~~kVvVIGGGdtA~D~A~~a~r--------------------~GA~~V   72 (153)
T d1gtea3          13 DQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALR--------------------CGARRV   72 (153)
T ss_dssp             TTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHH--------------------TTCSEE
T ss_pred             cCCEEEHHHHHHHHHhccccCCCcccCccccCCCEEEEECCChhHHHHHHHHHH--------------------cCCcce
Confidence            3589999999865321  11111122222 357899999999999999999886                    799999


Q ss_pred             EEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEE
Q 019876          207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV  286 (334)
Q Consensus       207 tiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~  286 (334)
                      ++++|++....+....++.+.                                                   ...++.++
T Consensus        73 ~vi~rr~~~~~~a~~~~~~~a---------------------------------------------------~~~~~~~~  101 (153)
T d1gtea3          73 FLVFRKGFVNIRAVPEEVELA---------------------------------------------------KEEKCEFL  101 (153)
T ss_dssp             EEECSSCGGGCCSCHHHHHHH---------------------------------------------------HHTTCEEE
T ss_pred             eEEEeCChhhhccchhheeec---------------------------------------------------ccccceeE
Confidence            999999865433332222111                                                   13478999


Q ss_pred             eccccceeeccccCCCCeeEEEEEEeeeecCCCCcceeecCCceEeC
Q 019876          287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL  333 (334)
Q Consensus       287 ~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (334)
                      ++..++++.  + .++++.++++...+.  +.+|++.++ +|+.+.|
T Consensus       102 ~~~~~~ei~--~-~~~~~~~v~~~~~e~--d~~G~~~~~-~g~e~~i  142 (153)
T d1gtea3         102 PFLSPRKVI--V-KGGRIVAVQFVRTEQ--DETGKWNED-EDQIVHL  142 (153)
T ss_dssp             CSEEEEEEE--E-ETTEEEEEEEEEEEE--CTTSCEEEE-EEEEEEE
T ss_pred             eccccEEEE--e-cCCceEEEEEEEeeE--CCCCCEecC-CCCEEEE
Confidence            999999998  6 467888888877654  456887765 4555554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.26  E-value=1.2e-12  Score=101.35  Aligned_cols=98  Identities=16%  Similarity=0.273  Sum_probs=69.8

Q ss_pred             CCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC
Q 019876          123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS  202 (334)
Q Consensus       123 ~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~  202 (334)
                      |++||.+.+ +++.+++.....       +...+..+++++|||||++|+|+|..|++                    .|
T Consensus         2 P~ipG~~~~-v~~lrtl~Da~~-------l~~~~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g   53 (121)
T d1d7ya2           2 PTLQGATMP-VHTLRTLEDARR-------IQAGLRPQSRLLIVGGGVIGLELAATART--------------------AG   53 (121)
T ss_dssp             GGGTTCSSC-EEECCSHHHHHH-------HHHHCCTTCEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred             ccCCCCCCC-EEEeCCHHHHHH-------HHHhhhcCCeEEEECcchhHHHHHHHhhc--------------------cc
Confidence            689998865 777655442211       11123467999999999999999999996                    66


Q ss_pred             cceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceE
Q 019876          203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE  282 (334)
Q Consensus       203 ~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  282 (334)
                      . +||+++++++++....++++.+.                                     +++.+         .++|
T Consensus        54 ~-~Vtli~~~~~~l~~~~~~~~~~~-------------------------------------~~~~l---------~~~G   86 (121)
T d1d7ya2          54 V-HVSLVETQPRLMSRAAPATLADF-------------------------------------VARYH---------AAQG   86 (121)
T ss_dssp             C-EEEEEESSSSTTTTTSCHHHHHH-------------------------------------HHHHH---------HTTT
T ss_pred             c-eEEEEeeccccccccCCHHHHHH-------------------------------------HHHHH---------HHCC
Confidence            5 69999999988755444443322                                     33333         2679


Q ss_pred             EEEEeccccceee
Q 019876          283 LHFVFFRKPDSFL  295 (334)
Q Consensus       283 v~~~~~~~~~~i~  295 (334)
                      |+|++++.++++.
T Consensus        87 V~i~~~~~v~~~~   99 (121)
T d1d7ya2          87 VDLRFERSVTGSV   99 (121)
T ss_dssp             CEEEESCCEEEEE
T ss_pred             cEEEeCCEEEEEe
Confidence            9999999999886

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=2.1e-11  Score=94.34  Aligned_cols=84  Identities=20%  Similarity=0.226  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++++|||||++|+|+|..|++                    +|. +|||++|++++++.+++ ++.            
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~--------------------lG~-~Vtii~~~~~~l~~~d~-ei~------------   67 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSR--------------------LGS-KVTVVEFQPQIGASMDG-EVA------------   67 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSSSSSSCH-HHH------------
T ss_pred             CCCeEEEECCCchHHHHHHHHHh--------------------hCc-ceeEEEeccccchhhhh-hhH------------
Confidence            45899999999999999999996                    786 69999999998866543 232            


Q ss_pred             ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                               +.+++.+.         ++||+|++++.++++.  .++++....+.+.+
T Consensus        68 -------------------------~~l~~~l~---------~~GV~i~~~~~v~~v~--~~~~~~~v~~~~~~  105 (122)
T d1v59a2          68 -------------------------KATQKFLK---------KQGLDFKLSTKVISAK--RNDDKNVVEIVVED  105 (122)
T ss_dssp             -------------------------HHHHHHHH---------HTTCEEECSEEEEEEE--EETTTTEEEEEEEE
T ss_pred             -------------------------HHHHHHHH---------hccceEEeCCEEEEEE--EeCCCcEEEEEEEe
Confidence                                     23333332         5699999999999997  32345444444443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=2e-11  Score=93.59  Aligned_cols=89  Identities=20%  Similarity=0.323  Sum_probs=71.2

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ...+++|+|||||+.|+.+|..|++.|  .+|+|+++.+.+.        |.+  .+++..++.+.+++.|+++++++.+
T Consensus        18 ~~~p~~vvIiGgG~ig~E~A~~l~~~G--~~Vtlve~~~~~l--------~~~--d~~~~~~~~~~l~~~GV~~~~~~~v   85 (116)
T d1gesa2          18 PALPERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFDAPL--------PSF--DPMISETLVEVMNAEGPQLHTNAIP   85 (116)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHHSCEEECSCCE
T ss_pred             hhCCCEEEEECCChhhHHHHHHhhccc--cEEEEEeecchhh--------hhc--chhhHHHHHHHHHHCCCEEEeCCEE
Confidence            345689999999999999999999997  9999999987642        332  3567788888899999999999866


Q ss_pred             ce---------EEecccce-eccCeEEEecc
Q 019876           96 GS---------SVSLSELR-QLYHVVVLAYG  116 (334)
Q Consensus        96 ~~---------~v~~~~~~-~~yd~lIlATG  116 (334)
                      ..         .+.+++++ +++|.||+|||
T Consensus        86 ~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          86 KAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            31         24444443 58999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.23  E-value=3.7e-11  Score=92.73  Aligned_cols=89  Identities=17%  Similarity=0.216  Sum_probs=70.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      .+.++++|||||+.|+.+|..|++.+  .+|+++++.+.+.        |. ...+++...+.+.+++.||+++++..+.
T Consensus        28 ~~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~~l--------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~   96 (121)
T d1d7ya2          28 RPQSRLLIVGGGVIGLELAATARTAG--VHVSLVETQPRLM--------SR-AAPATLADFVARYHAAQGVDLRFERSVT   96 (121)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEEESCCEE
T ss_pred             hcCCeEEEECcchhHHHHHHHhhccc--ceEEEEeeccccc--------cc-cCCHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence            34689999999999999999999997  9999999988642        21 1235677788888999999999998763


Q ss_pred             e----EEecccce-eccCeEEEecc
Q 019876           97 S----SVSLSELR-QLYHVVVLAYG  116 (334)
Q Consensus        97 ~----~v~~~~~~-~~yd~lIlATG  116 (334)
                      .    .+.+.+++ +++|.||+|+|
T Consensus        97 ~~~~~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          97 GSVDGVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             EEETTEEEETTSCEEECSEEEECSC
T ss_pred             EEeCCEEEECCCCEEECCEEEEeeC
Confidence            2    34455544 68999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.22  E-value=3.3e-11  Score=92.86  Aligned_cols=103  Identities=16%  Similarity=0.204  Sum_probs=74.2

Q ss_pred             CccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceE
Q 019876          127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV  206 (334)
Q Consensus       127 G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V  206 (334)
                      |.+.+||+++..+...+.           ..++++|+|||||++|+|+|..|++                    .+. +|
T Consensus         1 G~~~~gv~~~~~~~~~l~-----------~~~~~~vvVvGgG~ig~E~A~~l~~--------------------~g~-~v   48 (121)
T d1mo9a2           1 GVNAKGVFDHATLVEELD-----------YEPGSTVVVVGGSKTAVEYGCFFNA--------------------TGR-RT   48 (121)
T ss_dssp             TTTSBTEEEHHHHHHHCC-----------SCCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EE
T ss_pred             CCCCCCEEeHHHHHHHHh-----------hCCCCEEEEECCCHHHHHHHHHHHh--------------------cch-hh
Confidence            567789998888765432           1257999999999999999999996                    565 69


Q ss_pred             EEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEE
Q 019876          207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV  286 (334)
Q Consensus       207 tiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~  286 (334)
                      ++++|++.+++.+++ ++.                                     +.+++.+.         .+||+|+
T Consensus        49 t~i~~~~~~l~~~d~-~~~-------------------------------------~~~~~~l~---------~~gI~v~   81 (121)
T d1mo9a2          49 VMLVRTEPLKLIKDN-ETR-------------------------------------AYVLDRMK---------EQGMEII   81 (121)
T ss_dssp             EEECSSCTTTTCCSH-HHH-------------------------------------HHHHHHHH---------HTTCEEE
T ss_pred             eEeeccchhhccccc-chh-------------------------------------hhhhhhhh---------ccccEEE
Confidence            999999988755443 222                                     22233332         5689999


Q ss_pred             eccccceeeccccCCCCeeEEEEE
Q 019876          287 FFRKPDSFLESNERSGHVSGVHFE  310 (334)
Q Consensus       287 ~~~~~~~i~~~~~~~~~v~~v~~~  310 (334)
                      +++.+++|...  +++.+..+...
T Consensus        82 ~~~~v~~i~~~--~~~~~~~~~~~  103 (121)
T d1mo9a2          82 SGSNVTRIEED--ANGRVQAVVAM  103 (121)
T ss_dssp             SSCEEEEEEEC--TTSBEEEEEEE
T ss_pred             cCCEEEEEEec--CCceEEEEEEE
Confidence            99999999832  35666655543

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.21  E-value=3.8e-11  Score=93.70  Aligned_cols=104  Identities=17%  Similarity=0.341  Sum_probs=73.4

Q ss_pred             CCCCCccC-------CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHH
Q 019876          123 LGIPGEDL-------IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW  195 (334)
Q Consensus       123 ~~ipG~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~  195 (334)
                      +++||++.       +||.++..        ||..   +.++++|+|+|||+|++|+|.|..|++               
T Consensus         2 l~~pGe~E~~~~f~gkGVsyca~--------CDg~---a~~frgk~V~VvGgGdsA~e~A~~L~~---------------   55 (130)
T d1vdca2           2 LSFVGSGEVLGGFWNRGISACAV--------CDGA---APIFRNKPLAVIGGGDSAMEEANFLTK---------------   55 (130)
T ss_dssp             CCCBTCSSSSSCCBTTTEESCHH--------HHTT---SGGGTTSEEEEECCSHHHHHHHHHHTT---------------
T ss_pred             CCCCccccccccccCCcEEEEEE--------ecCc---hHHhCCCEEEEEcCchHHHHHHHHHhC---------------
Confidence            67888763       56665532        1110   125689999999999999999999996               


Q ss_pred             HHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCC
Q 019876          196 TALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQ  275 (334)
Q Consensus       196 ~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (334)
                            -+++||+++|++.+...                                            +.+.+.+.     
T Consensus        56 ------~a~~V~li~r~~~~ra~--------------------------------------------~~~~~~l~-----   80 (130)
T d1vdca2          56 ------YGSKVYIIHRRDAFRAS--------------------------------------------KIMQQRAL-----   80 (130)
T ss_dssp             ------TSSEEEEECSSSSCCSC--------------------------------------------HHHHHHHH-----
T ss_pred             ------CCCcEEEEEeccccccc--------------------------------------------hhhhhccc-----
Confidence                  66789999999876310                                            01122222     


Q ss_pred             CCCCceEEEEEeccccceeeccccC-CCCeeEEEEEEe
Q 019876          276 PMLGQRELHFVFFRKPDSFLESNER-SGHVSGVHFEKT  312 (334)
Q Consensus       276 ~~~~~~gv~~~~~~~~~~i~~~~~~-~~~v~~v~~~~~  312 (334)
                         ...+|++++++++.+|.  |+. .+.+.++++.+.
T Consensus        81 ---~~~nI~v~~~~~v~~i~--Gd~~~~~v~~v~l~~~  113 (130)
T d1vdca2          81 ---SNPKIDVIWNSSVVEAY--GDGERDVLGGLKVKNV  113 (130)
T ss_dssp             ---TCTTEEEECSEEEEEEE--ESSSSSSEEEEEEEET
T ss_pred             ---cCCceEEEeccEEEEEE--ccCCcccEEEEEEEEC
Confidence               25679999999999999  721 146899998874

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.20  E-value=3e-11  Score=92.40  Aligned_cols=90  Identities=18%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ....+++++|||||+.|+.+|..|++.+  .+|+|+++.+.+.        |.+  ..++...+.+.+++.|+++++++.
T Consensus        17 ~~~~p~~vvIiGgG~~G~E~A~~l~~~g--~~Vtlve~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~   84 (115)
T d1lvla2          17 PKALPQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARERIL--------PTY--DSELTAPVAESLKKLGIALHLGHS   84 (115)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHHTCEEETTCE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHhhcc--cceEEEeeecccc--------ccc--cchhHHHHHHHHHhhcceEEcCcE
Confidence            3445689999999999999999999997  9999999988642        433  346778888889999999999987


Q ss_pred             Ece-----EEe-ccc---ceeccCeEEEecc
Q 019876           95 LGS-----SVS-LSE---LRQLYHVVVLAYG  116 (334)
Q Consensus        95 v~~-----~v~-~~~---~~~~yd~lIlATG  116 (334)
                      +..     .+. ..+   ..+++|.||+|||
T Consensus        85 V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          85 VEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             EEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            742     111 111   2368999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.18  E-value=3.9e-11  Score=92.01  Aligned_cols=90  Identities=9%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             CCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC
Q 019876          123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS  202 (334)
Q Consensus       123 ~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~  202 (334)
                      |++|+.+  .++++.+++.    ..         ..+++++|||||++|+|+|..|++                    .|
T Consensus         1 P~~~~~~--~i~~s~~~l~----~~---------~~p~~v~IiGgG~ig~E~A~~l~~--------------------~G   45 (117)
T d1ebda2           1 PNFKFSN--RILDSTGALN----LG---------EVPKSLVVIGGGYIGIELGTAYAN--------------------FG   45 (117)
T ss_dssp             TTBCCCS--SEECHHHHHT----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred             CcCCCCC--CEEChhHhhC----hh---------hcCCeEEEECCCccceeeeeeecc--------------------cc
Confidence            4566653  5677766652    11         146899999999999999999996                    67


Q ss_pred             cceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceE
Q 019876          203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE  282 (334)
Q Consensus       203 ~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  282 (334)
                      . +||+++|++++++.+++. +.                                     +.+++.+.         ++|
T Consensus        46 ~-~Vtlve~~~~il~~~d~~-~~-------------------------------------~~l~~~l~---------~~G   77 (117)
T d1ebda2          46 T-KVTILEGAGEILSGFEKQ-MA-------------------------------------AIIKKRLK---------KKG   77 (117)
T ss_dssp             C-EEEEEESSSSSSTTSCHH-HH-------------------------------------HHHHHHHH---------HTT
T ss_pred             c-EEEEEEecceecccccch-hH-------------------------------------HHHHHHHH---------hcC
Confidence            6 599999999987665432 22                                     22333332         569


Q ss_pred             EEEEeccccceee
Q 019876          283 LHFVFFRKPDSFL  295 (334)
Q Consensus       283 v~~~~~~~~~~i~  295 (334)
                      |+|++++.+++|.
T Consensus        78 I~i~~~~~v~~i~   90 (117)
T d1ebda2          78 VEVVTNALAKGAE   90 (117)
T ss_dssp             CEEEESEEEEEEE
T ss_pred             CEEEcCCEEEEEE
Confidence            9999999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.3e-11  Score=93.68  Aligned_cols=104  Identities=21%  Similarity=0.261  Sum_probs=73.3

Q ss_pred             CCCCCcc---CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHh
Q 019876          123 LGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE  199 (334)
Q Consensus       123 ~~ipG~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~  199 (334)
                      +++||++   ..||+++....             ..++++|+|+|||+|++|+|.|..|++                   
T Consensus         1 L~ipge~~~~gkgV~yca~cD-------------~~~~~~k~V~VvGgGdsA~e~A~~L~~-------------------   48 (126)
T d1trba2           1 LGLPSEEAFKGRGVSACATSD-------------GFFYRNQKVAVIGGGNTAVEEALYLSN-------------------   48 (126)
T ss_dssp             CCCHHHHHTBTTTEESCHHHH-------------GGGGTTSEEEEECSSHHHHHHHHHHTT-------------------
T ss_pred             CcCCCHHHhcCCCEEEEEecc-------------hHHhCCCEEEEECCCHHHHHHHHHHhh-------------------
Confidence            4677765   36776653221             124589999999999999999999996                   


Q ss_pred             cCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCC
Q 019876          200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG  279 (334)
Q Consensus       200 ~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (334)
                        -+++||+++|++.+.  ..+.                                      ..+.+.+..         .
T Consensus        49 --~a~~V~li~r~~~~~--~~~~--------------------------------------~~~~~~~~~---------~   77 (126)
T d1trba2          49 --IASEVHLIHRRDGFR--AEKI--------------------------------------LIKRLMDKV---------E   77 (126)
T ss_dssp             --TSSEEEEECSSSSCC--CCHH--------------------------------------HHHHHHHHH---------H
T ss_pred             --cCCcEEEEeeccccc--chhH--------------------------------------HHHHHHHhh---------c
Confidence              567899999998652  1110                                      011222222         1


Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                      ..+|.+++++.+.+|.  | ++..+++|++.++
T Consensus        78 ~~~i~~~~~~~v~~i~--G-~~~~v~~v~l~~~  107 (126)
T d1trba2          78 NGNIILHTNRTLEEVT--G-DQMGVTGVRLRDT  107 (126)
T ss_dssp             TSSEEEECSCEEEEEE--E-CSSSEEEEEEECC
T ss_pred             ccceeEecceEEEEEE--C-CCCceEEEEEEEC
Confidence            5679999999999999  8 3557999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.18  E-value=6.5e-12  Score=102.82  Aligned_cols=109  Identities=17%  Similarity=0.100  Sum_probs=68.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc-cCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~-~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      .+||||||||++|+.+|.+|++.+++.+|+|+|+++......... ........... ......+...++.+..+..+..
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESI-KHGYDGLRAHGIQVVHDSATGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGG-EECSHHHHTTTEEEECCCEEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhh-hhhhhhccccceeEeeeeeEee
Confidence            579999999999999999999998889999999987643222110 00000000000 0011223345677776655432


Q ss_pred             -----EEeccc-ceeccCeEEEeccCCCCCCCCCCCcc
Q 019876           98 -----SVSLSE-LRQLYHVVVLAYGAESDRALGIPGED  129 (334)
Q Consensus        98 -----~v~~~~-~~~~yd~lIlATGs~~p~~~~ipG~~  129 (334)
                           .+...+ ..++||+||+|||+ .|....+++..
T Consensus        81 ~~~~~~~~~~~~~~i~~D~li~atG~-~~~~~~i~~~~  117 (186)
T d1fcda1          81 DPDKKLVKTAGGAEFGYDRCVVAPGI-ELIYDKIEQRA  117 (186)
T ss_dssp             CTTTTEEEETTSCEEECSEEEECCCE-EECCTTSTEEE
T ss_pred             eeccceeecccceeeccceEEEEecc-ccchhhhhhhh
Confidence                 233333 34699999999999 57777777643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.15  E-value=1.6e-10  Score=88.73  Aligned_cols=90  Identities=14%  Similarity=0.290  Sum_probs=70.9

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ....+++++|||||+.|+.+|..+++.|  .+|+++++.+.+        .|.+  ..++...+.+.+++.|+++++++.
T Consensus        18 l~~~p~~i~IiG~G~ig~E~A~~l~~~G--~~Vtiv~~~~~l--------l~~~--d~ei~~~l~~~l~~~Gv~i~~~~~   85 (119)
T d3lada2          18 FQNVPGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMDKF--------LPAV--DEQVAKEAQKILTKQGLKILLGAR   85 (119)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSS--------STTS--CHHHHHHHHHHHHHTTEEEEETCE
T ss_pred             cccCCCeEEEECCChHHHHHHHHHHHcC--CceEEEEeeccc--------CCcc--cchhHHHHHHHHHhcCceeecCcE
Confidence            3445689999999999999999999997  999999998764        2432  457888889999999999999987


Q ss_pred             Ece--------EEeccc----ceeccCeEEEecc
Q 019876           95 LGS--------SVSLSE----LRQLYHVVVLAYG  116 (334)
Q Consensus        95 v~~--------~v~~~~----~~~~yd~lIlATG  116 (334)
                      +..        .++..+    .+..||+|++|+|
T Consensus        86 v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          86 VTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            632        233222    2357999999998

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.13  E-value=7.6e-11  Score=90.65  Aligned_cols=87  Identities=10%  Similarity=0.101  Sum_probs=64.7

Q ss_pred             ccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEE
Q 019876          128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY  207 (334)
Q Consensus       128 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt  207 (334)
                      .+.+.++++.+++.    ..         ..+++++|||||++|||+|..|++                    .|. +||
T Consensus         4 ~d~~~v~~s~~~l~----l~---------~~p~~i~IiG~G~ig~E~A~~l~~--------------------~G~-~Vt   49 (119)
T d3lada2           4 VDQDVIVDSTGALD----FQ---------NVPGKLGVIGAGVIGLELGSVWAR--------------------LGA-EVT   49 (119)
T ss_dssp             CCSSSEEEHHHHTS----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEE
T ss_pred             CCCCEEEchhHhhC----cc---------cCCCeEEEECCChHHHHHHHHHHH--------------------cCC-ceE
Confidence            34567887776652    11         146999999999999999999996                    786 599


Q ss_pred             EEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEe
Q 019876          208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF  287 (334)
Q Consensus       208 iv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~  287 (334)
                      +++|++++++.+++. +.                                     +.+++.+.         ++||+|++
T Consensus        50 iv~~~~~ll~~~d~e-i~-------------------------------------~~l~~~l~---------~~Gv~i~~   82 (119)
T d3lada2          50 VLEAMDKFLPAVDEQ-VA-------------------------------------KEAQKILT---------KQGLKILL   82 (119)
T ss_dssp             EEESSSSSSTTSCHH-HH-------------------------------------HHHHHHHH---------HTTEEEEE
T ss_pred             EEEeecccCCcccch-hH-------------------------------------HHHHHHHH---------hcCceeec
Confidence            999999887555432 22                                     23334432         67999999


Q ss_pred             ccccceee
Q 019876          288 FRKPDSFL  295 (334)
Q Consensus       288 ~~~~~~i~  295 (334)
                      ++.+++|.
T Consensus        83 ~~~v~~i~   90 (119)
T d3lada2          83 GARVTGTE   90 (119)
T ss_dssp             TCEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=8.4e-11  Score=89.96  Aligned_cols=83  Identities=11%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++++|||||++|+|+|..|++                    .|. +||+++|++++++.+++ ++.            
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~--------------------~G~-~Vtlve~~~~~l~~~d~-~~~------------   65 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVING--------------------LGA-KTHLFEMFDAPLPSFDP-MIS------------   65 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSSSTTSCH-HHH------------
T ss_pred             CCCEEEEECCChhhHHHHHHhhc--------------------ccc-EEEEEeecchhhhhcch-hhH------------
Confidence            45899999999999999999986                    776 69999999988655443 221            


Q ss_pred             ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                               +.+++.+.         ++||+|++++.+++|.  .++++.+ .+.+++
T Consensus        66 -------------------------~~~~~~l~---------~~GV~~~~~~~v~~i~--~~~~~~~-~v~~~~  102 (116)
T d1gesa2          66 -------------------------ETLVEVMN---------AEGPQLHTNAIPKAVV--KNTDGSL-TLELED  102 (116)
T ss_dssp             -------------------------HHHHHHHH---------HHSCEEECSCCEEEEE--ECTTSCE-EEEETT
T ss_pred             -------------------------HHHHHHHH---------HCCCEEEeCCEEEEEE--EcCCcEE-EEEECC
Confidence                                     22333332         5699999999999998  4223444 355544

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.11  E-value=2e-10  Score=90.01  Aligned_cols=89  Identities=16%  Similarity=0.202  Sum_probs=69.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++|+|||||++|+.+|..|++.+  .+|+++++.+.+.        +. ...+++...+.+.+++.||+++++..+.
T Consensus        33 ~~~k~v~VIGgG~iG~E~A~~l~~~g--~~Vtvie~~~~~l--------~~-~~~~~~~~~~~~~~~~~GV~i~~~~~v~  101 (133)
T d1q1ra2          33 IADNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAARVL--------ER-VTAPPVSAFYEHLHREAGVDIRTGTQVC  101 (133)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHHHTCEEECSCCEE
T ss_pred             ccCCEEEEECCchHHHHHHHHHHhhC--cceeeeeeccccc--------cc-ccchhhhhhhhhcccccccEEEeCCeEE
Confidence            34689999999999999999999997  9999999988652        21 1234566777788889999999987653


Q ss_pred             e-----------EEecccce-eccCeEEEecc
Q 019876           97 S-----------SVSLSELR-QLYHVVVLAYG  116 (334)
Q Consensus        97 ~-----------~v~~~~~~-~~yd~lIlATG  116 (334)
                      .           .+.+++++ +++|.||+|+|
T Consensus       102 ~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         102 GFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            1           23455554 69999999998

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.11  E-value=7.4e-11  Score=102.51  Aligned_cols=98  Identities=11%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc--------ccc-----------ccCCCCc----------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL--------VRS-----------GVAPDHP----------   69 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~--------~~~-----------~~~p~~~----------   69 (334)
                      .++|+||||||||+.||..|++.+  .+|+|+|+.+.+|..        ++.           ...|.+.          
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G--~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW   81 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhccc
Confidence            469999999999999999999997  999999999876521        110           0001110          


Q ss_pred             -------------------------chhHHHHHHHHHhhcCCcEEEeCeEEce------------EEecccceeccCeEE
Q 019876           70 -------------------------ETKIVINQFSRVVQHERCSFFGNVTLGS------------SVSLSELRQLYHVVV  112 (334)
Q Consensus        70 -------------------------~~~~~~~~~~~~~~~~~i~~~~~~~v~~------------~v~~~~~~~~yd~lI  112 (334)
                                               ...++...+.+.+++.++++++++.|..            .+..+..++.+|+||
T Consensus        82 ~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VI  161 (253)
T d2gqfa1          82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLI  161 (253)
T ss_dssp             HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEE
T ss_pred             chhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEE
Confidence                                     0123455566667777899998876632            122234456899999


Q ss_pred             EeccCC
Q 019876          113 LAYGAE  118 (334)
Q Consensus       113 lATGs~  118 (334)
                      +|||..
T Consensus       162 iAtGG~  167 (253)
T d2gqfa1         162 VATGGL  167 (253)
T ss_dssp             ECCCCS
T ss_pred             EcCCcc
Confidence            999984

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.10  E-value=7.3e-11  Score=91.30  Aligned_cols=85  Identities=15%  Similarity=0.200  Sum_probs=63.1

Q ss_pred             CCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEE
Q 019876          130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV  209 (334)
Q Consensus       130 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv  209 (334)
                      .+.++++.+++.    ..         ..+++++|||||++|+|+|..|++                    .|. +||++
T Consensus         9 ~~~v~ts~~~l~----l~---------~~p~~~viiG~G~iglE~A~~~~~--------------------~G~-~Vtvi   54 (123)
T d1dxla2           9 EKKIVSSTGALA----LS---------EIPKKLVVIGAGYIGLEMGSVWGR--------------------IGS-EVTVV   54 (123)
T ss_dssp             SSSEECHHHHTT----CS---------SCCSEEEESCCSHHHHHHHHHHHH--------------------HTC-EEEEE
T ss_pred             CCeEEeHHHhhC----cc---------ccCCeEEEEccchHHHHHHHHHHh--------------------cCC-eEEEE
Confidence            457887766552    11         146899999999999999999996                    686 69999


Q ss_pred             eecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEecc
Q 019876          210 GRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR  289 (334)
Q Consensus       210 ~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~  289 (334)
                      +|++.+++.+++ ++.                                     +.+++.+.         ++||+|++++
T Consensus        55 ~~~~~~l~~~d~-~~~-------------------------------------~~l~~~l~---------~~GI~i~~~~   87 (123)
T d1dxla2          55 EFASEIVPTMDA-EIR-------------------------------------KQFQRSLE---------KQGMKFKLKT   87 (123)
T ss_dssp             CSSSSSSTTSCH-HHH-------------------------------------HHHHHHHH---------HSSCCEECSE
T ss_pred             EEccccCchhhh-cch-------------------------------------hhhhhhhh---------cccceEEcCC
Confidence            999988755443 222                                     22333332         6799999999


Q ss_pred             ccceee
Q 019876          290 KPDSFL  295 (334)
Q Consensus       290 ~~~~i~  295 (334)
                      .+++|.
T Consensus        88 ~v~~i~   93 (123)
T d1dxla2          88 KVVGVD   93 (123)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.10  E-value=5.2e-11  Score=92.02  Aligned_cols=91  Identities=16%  Similarity=0.251  Sum_probs=66.2

Q ss_pred             CCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHh
Q 019876          120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE  199 (334)
Q Consensus       120 p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~  199 (334)
                      |+.|+|||.+  .+++.+++... ....      ..+..+++++|||||++|+|+|..|++                   
T Consensus         2 ~r~p~ipG~e--~~~t~~~~~d~-~~l~------~~~~~~~~vvIiGgG~iG~E~A~~l~~-------------------   53 (122)
T d1xhca2           2 AREPQIKGKE--YLLTLRTIFDA-DRIK------ESIENSGEAIIIGGGFIGLELAGNLAE-------------------   53 (122)
T ss_dssp             ECCCCSBTGG--GEECCCSHHHH-HHHH------HHHHHHSEEEEEECSHHHHHHHHHHHH-------------------
T ss_pred             CCCcCCCCcc--ceEccCCHHHH-HHHH------HHhhcCCcEEEECCcHHHHHHHHHhhc-------------------
Confidence            6789999975  45555443321 1000      012246899999999999999999996                   


Q ss_pred             cCCcceEEEEeecCccccCCCH---HHHHHHHcCCceEEEEccCc
Q 019876          200 GSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLYVHIREDD  241 (334)
Q Consensus       200 ~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~~  241 (334)
                       .|. +||+++|++.++ ++++   +.+.+.|+..||+++++...
T Consensus        54 -~g~-~Vtlv~~~~~l~-~~d~~~~~~~~~~l~~~GV~~~~~~~v   95 (122)
T d1xhca2          54 -AGY-HVKLIHRGAMFL-GLDEELSNMIKDMLEETGVKFFLNSEL   95 (122)
T ss_dssp             -TTC-EEEEECSSSCCT-TCCHHHHHHHHHHHHHTTEEEECSCCE
T ss_pred             -ccc-eEEEEecccccc-CCCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence             675 699999998876 4765   45677788899999998654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.09  E-value=1.6e-10  Score=89.55  Aligned_cols=93  Identities=12%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             CCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHh
Q 019876          120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE  199 (334)
Q Consensus       120 p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~  199 (334)
                      |+.|.+|+.  +.++++.+++.    ..         ..+++++|||||++|+|+|..+++                   
T Consensus         2 ~~lP~ip~~--~~i~ts~~~l~----l~---------~~p~~vvIiGgG~IG~E~A~~~~~-------------------   47 (125)
T d1ojta2           2 TKLPFIPED--PRIIDSSGALA----LK---------EVPGKLLIIGGGIIGLEMGTVYST-------------------   47 (125)
T ss_dssp             CCCSSCCCC--TTEECHHHHTT----CC---------CCCSEEEEESCSHHHHHHHHHHHH-------------------
T ss_pred             CCCCCCCCC--CcEEcHHHhhC----cc---------ccCCeEEEECCCHHHHHHHHHhhc-------------------
Confidence            455666653  45777666542    11         246999999999999999999996                   


Q ss_pred             cCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCC
Q 019876          200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG  279 (334)
Q Consensus       200 ~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (334)
                       .|. +||++++++.+++.+++ ++.                                     +.+++.+         .
T Consensus        48 -~G~-~Vtive~~~~il~~~d~-~~~-------------------------------------~~l~~~l---------~   78 (125)
T d1ojta2          48 -LGS-RLDVVEMMDGLMQGADR-DLV-------------------------------------KVWQKQN---------E   78 (125)
T ss_dssp             -HTC-EEEEECSSSSSSTTSCH-HHH-------------------------------------HHHHHHH---------G
T ss_pred             -CCC-EEEEEEeeccccccchh-hHH-------------------------------------HHHHHHH---------H
Confidence             686 69999999988765533 222                                     2333443         3


Q ss_pred             ceEEEEEeccccceee
Q 019876          280 QRELHFVFFRKPDSFL  295 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~  295 (334)
                      ++||++++++.++++.
T Consensus        79 ~~gv~~~~~~~v~~v~   94 (125)
T d1ojta2          79 YRFDNIMVNTKTVAVE   94 (125)
T ss_dssp             GGEEEEECSCEEEEEE
T ss_pred             HcCcccccCcEEEEEE
Confidence            7899999999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.09  E-value=1.1e-10  Score=89.43  Aligned_cols=86  Identities=20%  Similarity=0.264  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++++|||||++|+|+|..|..                 +...+ .+||+++|++++++.|++ ++.            
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~-----------------l~~~~-~~Vtli~~~~~iL~~~d~-~~~------------   67 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNA-----------------YKPKD-GQVTLCYRGEMILRGFDH-TLR------------   67 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHH-----------------HCCTT-CEEEEEESSSSSSTTSCH-HHH------------
T ss_pred             cCCeEEEECCcHHHHHHHHHhhh-----------------cccCC-cEEEEEeccchhhcccch-HHH------------
Confidence            46899999999999999987764                 11133 369999999988755532 222            


Q ss_pred             ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                               +.+++.+.         ++||+|++++.+++|.  .+.++.+ .|.+++
T Consensus        68 -------------------------~~l~~~l~---------~~GV~v~~~~~v~~ie--~~~~~~~-~v~~~~  104 (117)
T d1aoga2          68 -------------------------EELTKQLT---------ANGIQILTKENPAKVE--LNADGSK-SVTFES  104 (117)
T ss_dssp             -------------------------HHHHHHHH---------HTTCEEEESCCEEEEE--ECTTSCE-EEEETT
T ss_pred             -------------------------HHHHHHHH---------hcCcEEEcCCEEEEEE--EcCCCeE-EEEECC
Confidence                                     23333332         6799999999999997  3124444 466654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.08  E-value=1.6e-10  Score=99.73  Aligned_cols=98  Identities=21%  Similarity=0.240  Sum_probs=67.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc------------------------------------
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS------------------------------------   62 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~------------------------------------   62 (334)
                      .++|+||||||+|+.||..|++.|  ++|+|+|+.+.+++....                                    
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G--~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFN   79 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhh
Confidence            479999999999999999999997  999999998776542100                                    


Q ss_pred             -----------cc----------CCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce---------EEecccc-eeccCeE
Q 019876           63 -----------GV----------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSLSEL-RQLYHVV  111 (334)
Q Consensus        63 -----------~~----------~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~---------~v~~~~~-~~~yd~l  111 (334)
                                 ++          .|......++...+.+.+++.|++++.++.|..         .+..++. .+.+|+|
T Consensus        80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~v  159 (251)
T d2i0za1          80 NEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHV  159 (251)
T ss_dssp             HHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCE
T ss_pred             hHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeE
Confidence                       00          000011124555566667778999998876531         1233333 3589999


Q ss_pred             EEeccCC
Q 019876          112 VLAYGAE  118 (334)
Q Consensus       112 IlATGs~  118 (334)
                      |+|||..
T Consensus       160 I~AtGg~  166 (251)
T d2i0za1         160 VIAVGGK  166 (251)
T ss_dssp             EECCCCS
T ss_pred             EEccCCc
Confidence            9999984

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.8e-10  Score=86.78  Aligned_cols=96  Identities=15%  Similarity=0.156  Sum_probs=71.1

Q ss_pred             ccccccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcE
Q 019876            9 SRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS   88 (334)
Q Consensus         9 ~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~   88 (334)
                      ++.+......+++++|||||+.|+.+|..|.+.+  .+|+++++.+.+        .|.+  ..++..++.+.+++.||+
T Consensus        12 s~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~~--------l~~~--d~~~~~~~~~~l~~~Gv~   79 (125)
T d3grsa2          12 SDGFFQLEELPGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKV--------LRSF--DSMISTNCTEELENAGVE   79 (125)
T ss_dssp             HHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSS--------CTTS--CHHHHHHHHHHHHHTTCE
T ss_pred             HHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCC--cEEEEEeecccc--------ccch--hhHHHHHHHHHHHHCCCE
Confidence            3333333445689999999999999999999997  999999998764        1432  456788888899999999


Q ss_pred             EEeCeEEceE--------Eec---cc-------ceeccCeEEEecc
Q 019876           89 FFGNVTLGSS--------VSL---SE-------LRQLYHVVVLAYG  116 (334)
Q Consensus        89 ~~~~~~v~~~--------v~~---~~-------~~~~yd~lIlATG  116 (334)
                      ++.++.+..-        ++.   ..       ...++|.||+|+|
T Consensus        80 i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          80 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            9999887321        111   11       1236899999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=3.6e-10  Score=87.18  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=71.1

Q ss_pred             ccccccccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCC
Q 019876            7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER   86 (334)
Q Consensus         7 ~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~   86 (334)
                      |.+..+......+++++|||||+.|+.+|..|++.|  .+|+|++++..         .|.+  .+++...+.+.+++.|
T Consensus         8 ~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG--~~Vtii~~~~~---------l~~~--D~~~~~~l~~~l~~~G   74 (122)
T d1h6va2           8 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRSIL---------LRGF--DQDMANKIGEHMEEHG   74 (122)
T ss_dssp             BCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSS---------STTS--CHHHHHHHHHHHHHTT
T ss_pred             EcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcC--CeEEEEEechh---------hccC--CHHHHHHHHHHHHHCC
Confidence            334444444556689999999999999999999998  99999987531         1433  4568888899999999


Q ss_pred             cEEEeCeEEceE------------Eeccc------ceeccCeEEEecc
Q 019876           87 CSFFGNVTLGSS------------VSLSE------LRQLYHVVVLAYG  116 (334)
Q Consensus        87 i~~~~~~~v~~~------------v~~~~------~~~~yd~lIlATG  116 (334)
                      |+|++++.+..-            ++...      ...+||.|++|+|
T Consensus        75 v~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          75 IKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             CEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            999999765321            11111      1236899999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.07  E-value=3.1e-10  Score=87.50  Aligned_cols=86  Identities=20%  Similarity=0.144  Sum_probs=68.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      .++++|||||+.|+.+|..|.+.+  .+|+|+++.+.+.        +   ..+++...+.+.+++.|+++++++.+.. 
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~~l~--------~---~d~~~~~~~~~~l~~~GV~~~~~~~v~~~   98 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGAMFL--------G---LDEELSNMIKDMLEETGVKFFLNSELLEA   98 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSSCCT--------T---CCHHHHHHHHHHHHHTTEEEECSCCEEEE
T ss_pred             CCcEEEECCcHHHHHHHHHhhccc--ceEEEEecccccc--------C---CCHHHHHHHHHHHHHCCcEEEeCCEEEEE
Confidence            479999999999999999999997  9999999987642        1   1346777788888899999999976631 


Q ss_pred             ---EEecccceeccCeEEEeccC
Q 019876           98 ---SVSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        98 ---~v~~~~~~~~yd~lIlATGs  117 (334)
                         .+..+...+++|.+|+|+|.
T Consensus        99 ~~~~v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          99 NEEGVLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             CSSEEEETTEEEECSCEEEECCE
T ss_pred             eCCEEEeCCCEEECCEEEEEEEe
Confidence               23334445689999999994

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.06  E-value=4.5e-10  Score=86.91  Aligned_cols=91  Identities=15%  Similarity=0.242  Sum_probs=71.4

Q ss_pred             cCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        14 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      .....+++++|||||+.|+.+|..+++.|  .+|+++++.+.+        .|.+  ..++...+.+.+++.|+++++++
T Consensus        21 ~l~~~p~~vvIiGgG~IG~E~A~~~~~~G--~~Vtive~~~~i--------l~~~--d~~~~~~l~~~l~~~gv~~~~~~   88 (125)
T d1ojta2          21 ALKEVPGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMDGL--------MQGA--DRDLVKVWQKQNEYRFDNIMVNT   88 (125)
T ss_dssp             TCCCCCSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSSSS--------STTS--CHHHHHHHHHHHGGGEEEEECSC
T ss_pred             CccccCCeEEEECCCHHHHHHHHHhhcCC--CEEEEEEeeccc--------cccc--hhhHHHHHHHHHHHcCcccccCc
Confidence            34455789999999999999999999997  999999998764        2432  45788888999999999999998


Q ss_pred             EEce--------EEec--ccc---eeccCeEEEecc
Q 019876           94 TLGS--------SVSL--SEL---RQLYHVVVLAYG  116 (334)
Q Consensus        94 ~v~~--------~v~~--~~~---~~~yd~lIlATG  116 (334)
                      .+..        .+..  .++   ..++|.|++|+|
T Consensus        89 ~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          89 KTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             EEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             EEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            7632        1222  221   358999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.06  E-value=5.3e-10  Score=85.48  Aligned_cols=92  Identities=21%  Similarity=0.172  Sum_probs=70.0

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcC-CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~-~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      ....+++++|||||++|+.+|..+.+.. .+.+|+++++.+.+.        |.+  .+++...+.+.+++.||++++++
T Consensus        14 l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il--------~~~--d~~~~~~~~~~l~~~GI~v~~~~   83 (117)
T d1feca2          14 LDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--------RGF--DSELRKQLTEQLRANGINVRTHE   83 (117)
T ss_dssp             CSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--------TTS--CHHHHHHHHHHHHHTTEEEEETC
T ss_pred             ccccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc--------ccc--cchhhHHHHHHHhhCcEEEEcCC
Confidence            3445689999999999999998776653 148999999987642        432  35688888899999999999997


Q ss_pred             EEce---------EEecccce-eccCeEEEecc
Q 019876           94 TLGS---------SVSLSELR-QLYHVVVLAYG  116 (334)
Q Consensus        94 ~v~~---------~v~~~~~~-~~yd~lIlATG  116 (334)
                      .+..         .+..+++. ++||.||+|||
T Consensus        84 ~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          84 NPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             CEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            6632         24444443 58999999999

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.06  E-value=6.7e-11  Score=100.49  Aligned_cols=103  Identities=15%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc-cccccCCCCcc--------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPE--------------------------   70 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~-~~~~~~p~~~~--------------------------   70 (334)
                      ..++|+||||||||+.||.++++.|  .+|+|+|++. +||. +++++.|.+..                          
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEGQA-LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP   80 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC-CCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccc
Confidence            3579999999999999999999998  9999999975 4553 33333221110                          


Q ss_pred             ---hhH-----------HHHHHHHHhhcCCcEEEeCeEEc---eEEecccceeccCeEEEeccCCCCCCCC
Q 019876           71 ---TKI-----------VINQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALG  124 (334)
Q Consensus        71 ---~~~-----------~~~~~~~~~~~~~i~~~~~~~v~---~~v~~~~~~~~yd~lIlATGs~~p~~~~  124 (334)
                         ...           ........+...+++++.+...-   ..+......+.+|.+|||||+ .|..+|
T Consensus        81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~~~~i~a~~viiAtG~-~p~~lp  150 (220)
T d1lvla1          81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGS-SSVELP  150 (220)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCE-EECCBT
T ss_pred             eehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccccceeEeeceeeEcCCC-Cccccc
Confidence               000           11122334445567776654321   123333445689999999999 576543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.05  E-value=2.1e-10  Score=89.83  Aligned_cols=88  Identities=18%  Similarity=0.229  Sum_probs=66.5

Q ss_pred             CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEE
Q 019876          157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH  236 (334)
Q Consensus       157 ~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~  236 (334)
                      ..+++++|||||++|+|+|..|++                    .|. +||++++.++++....++++.+.         
T Consensus        33 ~~~k~v~VIGgG~iG~E~A~~l~~--------------------~g~-~Vtvie~~~~~l~~~~~~~~~~~---------   82 (133)
T d1q1ra2          33 IADNRLVVIGGGYIGLEVAATAIK--------------------ANM-HVTLLDTAARVLERVTAPPVSAF---------   82 (133)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSTTTTTSCHHHHHH---------
T ss_pred             ccCCEEEEECCchHHHHHHHHHHh--------------------hCc-ceeeeeecccccccccchhhhhh---------
Confidence            467999999999999999999996                    675 69999999988765554444333         


Q ss_pred             EccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                                                  +++.+         .++||+|++++.+++|.... ++++++.|.++++
T Consensus        83 ----------------------------~~~~~---------~~~GV~i~~~~~v~~i~~~~-~~~~v~~v~~~~G  120 (133)
T d1q1ra2          83 ----------------------------YEHLH---------REAGVDIRTGTQVCGFEMST-DQQKVTAVLCEDG  120 (133)
T ss_dssp             ----------------------------HHHHH---------HHHTCEEECSCCEEEEEECT-TTCCEEEEEETTS
T ss_pred             ----------------------------hhhcc---------cccccEEEeCCeEEEEEEeC-CCceEEEEECCCC
Confidence                                        22232         26699999999999996322 3567888888764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=9.4e-10  Score=84.73  Aligned_cols=88  Identities=15%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      ....+++++|||||+.|+.+|..|.+.|  .+|+|+++.+.+        .|.+  ..++...+.+.+++.||++++++.
T Consensus        19 l~~~p~~~vIiG~G~ig~E~A~~l~~lG--~~Vtii~~~~~~--------l~~~--d~ei~~~l~~~l~~~GV~i~~~~~   86 (122)
T d1v59a2          19 LKEIPKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQPQI--------GASM--DGEVAKATQKFLKKQGLDFKLSTK   86 (122)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSS--------SSSS--CHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             cccCCCeEEEECCCchHHHHHHHHHhhC--cceeEEEecccc--------chhh--hhhhHHHHHHHHHhccceEEeCCE
Confidence            3445689999999999999999999997  999999998864        2433  357888889999999999999987


Q ss_pred             Ece----------EEeccc------ceeccCeEEEe
Q 019876           95 LGS----------SVSLSE------LRQLYHVVVLA  114 (334)
Q Consensus        95 v~~----------~v~~~~------~~~~yd~lIlA  114 (334)
                      +..          .++..+      ..+++|.|++|
T Consensus        87 v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          87 VISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            632          122211      12579999887

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.3e-10  Score=88.61  Aligned_cols=70  Identities=19%  Similarity=0.229  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+|+++|||||++|+|+|..|++                    .|. +||+++|++++++.+++. +.            
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~--------------------~G~-~Vtlv~~~~~~l~~~d~~-~~------------   66 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSA--------------------LGS-KTSLMIRHDKVLRSFDSM-IS------------   66 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSSCTTSCHH-HH------------
T ss_pred             cCCEEEEEcCCccHHHHHHHHhc--------------------CCc-EEEEEeeccccccchhhH-HH------------
Confidence            35899999999999999999996                    676 699999999887555432 22            


Q ss_pred             ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceee
Q 019876          238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL  295 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~  295 (334)
                                               +.+++.+.         +.||+|++++.+++|.
T Consensus        67 -------------------------~~~~~~l~---------~~Gv~i~~~~~v~~i~   90 (125)
T d3grsa2          67 -------------------------TNCTEELE---------NAGVEVLKFSQVKEVK   90 (125)
T ss_dssp             -------------------------HHHHHHHH---------HTTCEEETTEEEEEEE
T ss_pred             -------------------------HHHHHHHH---------HCCCEEEeCCEEEEEE
Confidence                                     22233332         5699999999999997

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.04  E-value=8.7e-11  Score=99.49  Aligned_cols=41  Identities=22%  Similarity=0.361  Sum_probs=37.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ..++|+||||||||++||.++++.+  .+|+|||+.+.+||.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G--~kV~vie~~~~~GG~~   42 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGALGGTC   42 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSCCSH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCCee
Confidence            3589999999999999999999997  9999999998888865

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=3.3e-10  Score=93.90  Aligned_cols=101  Identities=17%  Similarity=0.215  Sum_probs=72.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc------CCCCcchhHHHHHHHHHhhcCCcEEEe
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV------APDHPETKIVINQFSRVVQHERCSFFG   91 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~------~p~~~~~~~~~~~~~~~~~~~~i~~~~   91 (334)
                      ++++|+||||||+||+||.++++.+  .+++|||+.+..|.+.....      .|......++...+..+..+.++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g--~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF   81 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEec
Confidence            4579999999999999999999997  99999998765443332111      133334567777788888888888877


Q ss_pred             CeEEce-------EEecccceeccCeEEEeccCCCCC
Q 019876           92 NVTLGS-------SVSLSELRQLYHVVVLAYGAESDR  121 (334)
Q Consensus        92 ~~~v~~-------~v~~~~~~~~yd~lIlATGs~~p~  121 (334)
                      +.....       .+........++.+++|+|. .++
T Consensus        82 ~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~-~~~  117 (190)
T d1trba1          82 DHINKVDLQNRPFRLNGDNGEYTCDALIIATGA-SAR  117 (190)
T ss_dssp             CCEEEEECSSSSEEEEESSCEEEEEEEEECCCE-EEC
T ss_pred             ceeEEEecCCCcEEEEEeeeeEeeeeeeeecce-eee
Confidence            654422       23333344678999999998 344

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.00  E-value=1.3e-09  Score=83.29  Aligned_cols=85  Identities=16%  Similarity=0.149  Sum_probs=67.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      +++|+|||||+.|+.+|..|.+.+  .+|+|+++.+.+        .|.+  .+++...+.+.+++.||++++++.+.. 
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~~i--------l~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~i   89 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGNRI--------LRKF--DESVINVLENDMKKNNINIVTFADVVEI   89 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSSSS--------CTTS--CHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHhcc--ccceeeehhccc--------cccc--cHHHHHHHHHHHHhCCCEEEECCEEEEE
Confidence            689999999999999999999997  999999998764        1433  357888888889999999999976531 


Q ss_pred             --------EEeccccee--ccCeEEEec
Q 019876           98 --------SVSLSELRQ--LYHVVVLAY  115 (334)
Q Consensus        98 --------~v~~~~~~~--~yd~lIlAT  115 (334)
                              .+.+.+++.  .||.||+|.
T Consensus        90 ~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          90 KKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             EESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             EEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence                    344555543  589999883

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.99  E-value=1.8e-09  Score=82.47  Aligned_cols=89  Identities=13%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             cCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        14 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      .....+++++|||||+.|+.+|..+.+.|  .+|+|+++.+.+.        |.+  ..++..++.+.+++.||++++++
T Consensus        17 ~~~~~p~~v~IiGgG~ig~E~A~~l~~~G--~~Vtlve~~~~il--------~~~--d~~~~~~l~~~l~~~GI~i~~~~   84 (117)
T d1ebda2          17 NLGEVPKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAGEIL--------SGF--EKQMAAIIKKRLKKKGVEVVTNA   84 (117)
T ss_dssp             TCSSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TTS--CHHHHHHHHHHHHHTTCEEEESE
T ss_pred             ChhhcCCeEEEECCCccceeeeeeecccc--cEEEEEEecceec--------ccc--cchhHHHHHHHHHhcCCEEEcCC
Confidence            33445689999999999999999999997  9999999988742        332  34678888889999999999998


Q ss_pred             EEce--------EEecc-c---ceeccCeEEEe
Q 019876           94 TLGS--------SVSLS-E---LRQLYHVVVLA  114 (334)
Q Consensus        94 ~v~~--------~v~~~-~---~~~~yd~lIlA  114 (334)
                      .+..        .+... +   .++++|.||+.
T Consensus        85 ~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          85 LAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            7642        12221 1   23579998873

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.98  E-value=2.6e-10  Score=95.26  Aligned_cols=101  Identities=17%  Similarity=0.284  Sum_probs=66.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccccc---CCCC-cchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH-PETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~---~p~~-~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      |||+|||||++|+.+|..|++.+++.+|+++++++.+. ....++   ..+. .....+.....+.+++.|++++.++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V   79 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS-FLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS-BCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc-ccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence            78999999999999999999998889999999886542 111011   0111 111222222344566789999998876


Q ss_pred             c------eEEecc---cc---eeccCeEEEeccCCCCCC
Q 019876           96 G------SSVSLS---EL---RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        96 ~------~~v~~~---~~---~~~yd~lIlATGs~~p~~  122 (334)
                      .      ..++..   ++   ..+||.+|+|+|+ .|..
T Consensus        80 ~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~-~~~~  117 (198)
T d1nhpa1          80 TAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VPFE  117 (198)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECC
T ss_pred             eeEeeccccceeeecccccccccccceeeEeecc-eeec
Confidence            3      123322   11   2479999999998 3543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.98  E-value=2.4e-09  Score=82.52  Aligned_cols=87  Identities=24%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG   96 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   96 (334)
                      ...++|+|||||+.|+.+|..|++.+  .+|+++|+.+.+.        |.. ...++...+.+.+++.|+++++++.+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g--~~Vtlie~~~~~l--------~~~-~d~~~~~~~~~~l~~~gv~~~~~~~v~   96 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILDRPL--------GVY-LDKEFTDVLTEEMEANNITIATGETVE   96 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TTT-CCHHHHHHHHHHHHTTTEEEEESCCEE
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccc--eEEEEEEecCccc--------ccc-cchhhHHHHHHHhhcCCeEEEeCceEE
Confidence            34679999999999999999999997  9999999987642        211 234677888888999999999997763


Q ss_pred             e--------EEecccceeccCeEEEe
Q 019876           97 S--------SVSLSELRQLYHVVVLA  114 (334)
Q Consensus        97 ~--------~v~~~~~~~~yd~lIlA  114 (334)
                      .        .+..+..++++|.||+|
T Consensus        97 ~i~~~~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          97 RYEGDGRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             EEECSSBCCEEEESSCEEECSEEEEC
T ss_pred             EEEcCCCEEEEEeCCCEEECCEEEEE
Confidence            2        12223334689999987

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=3.1e-11  Score=97.95  Aligned_cols=151  Identities=21%  Similarity=0.223  Sum_probs=82.2

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc--cccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce-
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR--SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-   97 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~--~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-   97 (334)
                      ||+|||||++|+.+|..|++.   .+|+|+++++.+.....  ............+..+...++...+++++.++.+.. 
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~---~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   78 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQT---YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   78 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT---SEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHcC---CCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence            899999999999999999763   79999998865421110  000111111122223334455667899888765531 


Q ss_pred             -----EEecccceeccCeEEEeccCCCCCCC-CCCCccC-CCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHH
Q 019876           98 -----SVSLSELRQLYHVVVLAYGAESDRAL-GIPGEDL-IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNV  170 (334)
Q Consensus        98 -----~v~~~~~~~~yd~lIlATGs~~p~~~-~ipG~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~  170 (334)
                           .+..++.+++||.+|+|+|. .|..+ .-.|.+. .++.. .++++.  ..++... ..+. ...+.+++|++.+
T Consensus        79 ~~~~~~~~~~~~~i~~D~li~a~G~-~~~~~~~~~gl~~~~~i~v-~~~~~t--~~~~i~a-iGD~-~~~~~~~~~~~~~  152 (167)
T d1xhca1          79 DRGRKVVITEKGEVPYDTLVLATGA-PNVDLARRSGIHTGRGILI-DDNFRT--SAKDVYA-IGDC-AEYSGIIAGTAKA  152 (167)
T ss_dssp             ETTTTEEEESSCEEECSEEEECCCE-ECCHHHHHTTCCBSSSEEC-CTTSBC--SSTTEEE-CGGG-EEBTTBCCCSHHH
T ss_pred             ccccccccccccccccceeEEEEEe-cCCchhhhcCceeCCceee-ccccEe--cCCCeEE-eeec-ccCCCeEEChHHH
Confidence                 23334456799999999998 34322 1112221 12211 111100  0000000 0000 0122347789999


Q ss_pred             HHHHHHHHcc
Q 019876          171 ALDVARILLR  180 (334)
Q Consensus       171 g~e~A~~L~~  180 (334)
                      |++.|..+++
T Consensus       153 a~~~a~~~a~  162 (167)
T d1xhca1         153 AMEQARVLAD  162 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988874

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.97  E-value=1.8e-10  Score=100.54  Aligned_cols=109  Identities=19%  Similarity=0.274  Sum_probs=69.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc-ccccCCCCc---------------------------
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHP---------------------------   69 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~-~~~~~p~~~---------------------------   69 (334)
                      +.++++|||+||+|+.||..+.+.+  .+++++|+.+.+||.+ +++|.|.+.                           
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G--~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~  118 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKV  118 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhcccccccccc
Confidence            4678999999999999999999997  9999999988887754 234433210                           


Q ss_pred             -chhHHHHHHH------------HHhhcCCcEE-EeCe-EE--ceEEecccceeccCeEEEeccCCCCCCCCCCCcc
Q 019876           70 -ETKIVINQFS------------RVVQHERCSF-FGNV-TL--GSSVSLSELRQLYHVVVLAYGAESDRALGIPGED  129 (334)
Q Consensus        70 -~~~~~~~~~~------------~~~~~~~i~~-~~~~-~v--~~~v~~~~~~~~yd~lIlATGs~~p~~~~ipG~~  129 (334)
                       ..+.....+.            ......+... ..+. .+  .+.+...+..+++|.+|+|||+ .|+.+++|+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~~g~~i~ad~viiAtG~-~P~~~~i~~~~  194 (261)
T d1mo9a1         119 VGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGA-GPGTLDVPEQP  194 (261)
T ss_dssp             CCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCE-ECCCCCSTCEE
T ss_pred             ccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeecccccccceEeeeeeeeccCC-CCCcCcccccc
Confidence             0111111110            1112222222 2111 11  1234445556789999999999 69999999864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.96  E-value=8.7e-10  Score=84.21  Aligned_cols=87  Identities=18%  Similarity=0.258  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++++|||||++|+|+|..|++                 +...|. +|++++|.+++++.+++ ++++           
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~-----------------~~~~g~-~Vtli~~~~~il~~~d~-~~~~-----------   66 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNA-----------------YKARGG-QVDLAYRGDMILRGFDS-ELRK-----------   66 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHH-----------------HSCTTC-EEEEEESSSSSSTTSCH-HHHH-----------
T ss_pred             cCCeEEEECCChHHHHHHHHhHh-----------------hccccc-ccceecccccccccccc-hhhH-----------
Confidence            46899999999999999987764                 222465 69999999988765543 2322           


Q ss_pred             ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                                                .+++.+.         ++||+|++++.+++|.  . .++.+..+.++++
T Consensus        67 --------------------------~~~~~l~---------~~GI~v~~~~~v~~i~--~-~~~g~~~v~~~~g  103 (117)
T d1feca2          67 --------------------------QLTEQLR---------ANGINVRTHENPAKVT--K-NADGTRHVVFESG  103 (117)
T ss_dssp             --------------------------HHHHHHH---------HTTEEEEETCCEEEEE--E-CTTSCEEEEETTS
T ss_pred             --------------------------HHHHHHh---------hCcEEEEcCCEEEEEE--E-CCCCEEEEEECCC
Confidence                                      2333332         6799999999999997  3 2344556777654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.96  E-value=2.4e-09  Score=81.72  Aligned_cols=99  Identities=16%  Similarity=0.125  Sum_probs=72.4

Q ss_pred             ccccccccCCCCCCeEEEECCchHHHHHHHHHhhcCC-CCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcC
Q 019876            7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE   85 (334)
Q Consensus         7 ~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~-~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~   85 (334)
                      |.++.+......+++++|||||+.|+.+|..+.+.+. +.+|+|+++.+.+        .|.+  .+++...+.+.+++.
T Consensus         8 ~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i--------L~~~--d~~~~~~l~~~l~~~   77 (117)
T d1aoga2           8 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI--------LRGF--DHTLREELTKQLTAN   77 (117)
T ss_dssp             BCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS--------STTS--CHHHHHHHHHHHHHT
T ss_pred             EcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh--------hccc--chHHHHHHHHHHHhc
Confidence            3343333344556899999999999999988877652 4789999998764        2433  356788888999999


Q ss_pred             CcEEEeCeEEc---------eEEecccce-eccCeEEEec
Q 019876           86 RCSFFGNVTLG---------SSVSLSELR-QLYHVVVLAY  115 (334)
Q Consensus        86 ~i~~~~~~~v~---------~~v~~~~~~-~~yd~lIlAT  115 (334)
                      ||++++++.+.         ..+.+++++ +++|.||+|.
T Consensus        78 GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          78 GIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            99999997653         134555544 5899999883

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.94  E-value=7.9e-10  Score=88.79  Aligned_cols=69  Identities=22%  Similarity=0.170  Sum_probs=51.9

Q ss_pred             eccCCCCCCC-CCCCccCC--CccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEE--cCCHHHHHHHHHHccCCcccccc
Q 019876          114 AYGAESDRAL-GIPGEDLI--GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL--GQGNVALDVARILLRPTEELATT  188 (334)
Q Consensus       114 ATGs~~p~~~-~ipG~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVI--G~G~~g~e~A~~L~~~~~~~~~~  188 (334)
                      |||+. |..+ ||||.+..  .+++..+.+.   ..         ...++.|+|+  |||++|+|+|..|++        
T Consensus         4 atG~~-~~~~~pipG~~~~~~~v~t~~d~l~---~~---------~~~~~~vvi~d~ggg~ig~e~A~~la~--------   62 (156)
T d1djqa2           4 TDGTN-CLTHDPIPGADASLPDQLTPEQVMD---GK---------KKIGKRVVILNADTYFMAPSLAEKLAT--------   62 (156)
T ss_dssp             SSCCC-TTTSSCCTTCCTTSTTEECHHHHHH---TC---------SCCCSEEEEEECCCSSHHHHHHHHHHH--------
T ss_pred             CCCCC-CCCCCCCCCccCCCCEEECHHHHhc---Cc---------cccCCceEEEecCCChHHHHHHHHHHH--------
Confidence            89994 6665 89999854  5677766653   11         1246777776  999999999999996        


Q ss_pred             cccHHHHHHHhcCCcceEEEEeecCccc
Q 019876          189 DIASYAWTALEGSSIRKVYLVGRRGPVQ  216 (334)
Q Consensus       189 ~~~~~~~~~~~~~~~~~Vtiv~r~~~~~  216 (334)
                                  .|. +||++++.+.++
T Consensus        63 ------------~G~-~Vtlv~~~~~~~   77 (156)
T d1djqa2          63 ------------AGH-EVTIVSGVHLAN   77 (156)
T ss_dssp             ------------TTC-EEEEEESSCTTT
T ss_pred             ------------cCC-eEEEEecCCccc
Confidence                        786 699999987653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.6e-09  Score=83.08  Aligned_cols=90  Identities=17%  Similarity=0.071  Sum_probs=67.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcC--CCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~--~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      ..++++|||||++|+.+|..|.+..  .+.+|+++++++.+.        +. ..+.++...+.+.+++.||+++.++.+
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l--------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~V  106 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM--------GK-ILPEYLSNWTMEKVRREGVKVMPNAIV  106 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEECSCCE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC--------cc-cCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence            3579999999999999999886421  248999999987642        11 123567778888899999999999765


Q ss_pred             ce--------EEecccce-eccCeEEEecc
Q 019876           96 GS--------SVSLSELR-QLYHVVVLAYG  116 (334)
Q Consensus        96 ~~--------~v~~~~~~-~~yd~lIlATG  116 (334)
                      ..        .+.+++++ +.+|.||+|+|
T Consensus       107 ~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             EEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             EEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            31        35555654 69999999999

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.91  E-value=6.2e-09  Score=79.72  Aligned_cols=87  Identities=11%  Similarity=0.008  Sum_probs=67.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      +.++|+|||||+.|+.+|..|++.+  .+|+++++.+.+.        |.+  ..++...+.+.+++.++++++++.+..
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g--~~vt~i~~~~~~l--------~~~--d~~~~~~~~~~l~~~gI~v~~~~~v~~   88 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTEPLK--------LIK--DNETRAYVLDRMKEQGMEIISGSNVTR   88 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------TCC--SHHHHHHHHHHHHHTTCEEESSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcc--hhheEeeccchhh--------ccc--ccchhhhhhhhhhccccEEEcCCEEEE
Confidence            4589999999999999999999997  9999999987532        332  346777888888999999999987632


Q ss_pred             E----------E---eccc-ceeccCeEEEecc
Q 019876           98 S----------V---SLSE-LRQLYHVVVLAYG  116 (334)
Q Consensus        98 ~----------v---~~~~-~~~~yd~lIlATG  116 (334)
                      -          +   ...+ ..+++|.||+|+|
T Consensus        89 i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          89 IEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             EEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            1          1   1112 2358999999998

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-10  Score=97.78  Aligned_cols=109  Identities=16%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC-ccc--ccccc----CCC------------C-----cchhH
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGL--VRSGV----APD------------H-----PETKI   73 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~-gg~--~~~~~----~p~------------~-----~~~~~   73 (334)
                      ++.++||||||++|+.+|..|++.++..+|++|++++.+ +-.  +.+..    .+.            .     ..+.+
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   82 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence            457899999999999999999999888899999987553 110  00000    000            0     00000


Q ss_pred             --HHHHHHHHhhcCCcEEEeCeEEc------eEEecccce-eccCeEEEeccCCCCCCCCCCC
Q 019876           74 --VINQFSRVVQHERCSFFGNVTLG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPG  127 (334)
Q Consensus        74 --~~~~~~~~~~~~~i~~~~~~~v~------~~v~~~~~~-~~yd~lIlATGs~~p~~~~ipG  127 (334)
                        ........+++.+|++++++.|.      +.|.+.+++ ++||+||+|||+ .|..+++++
T Consensus        83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~-~~~~~~l~~  144 (213)
T d1m6ia1          83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGG-TEPNVELAK  144 (213)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCE-EEECCTTHH
T ss_pred             hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeee-ecchhhhhh
Confidence              00111234466789999987663      256666664 699999999998 455555554

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7e-10  Score=93.78  Aligned_cols=102  Identities=12%  Similarity=0.160  Sum_probs=66.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcc--------------------------hh
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE--------------------------TK   72 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~--------------------------~~   72 (334)
                      .++++||||||||++||.++++.+  .+|+|+|+....|.+++.++.|.+..                          ..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G--~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELG--ARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWR   80 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCC--CEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhh
Confidence            479999999999999999999997  99999999755444433333221100                          00


Q ss_pred             -----------HHHHHHHHHhhcCCcEEEeCeEEc-----eEEecccceeccCeEEEeccCCCCCCC
Q 019876           73 -----------IVINQFSRVVQHERCSFFGNVTLG-----SSVSLSELRQLYHVVVLAYGAESDRAL  123 (334)
Q Consensus        73 -----------~~~~~~~~~~~~~~i~~~~~~~v~-----~~v~~~~~~~~yd~lIlATGs~~p~~~  123 (334)
                                 .+.......++..+++++.+....     ..+.........+.+++|||+ .|..|
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~-~p~vp  146 (221)
T d3grsa1          81 VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGG-MPSTP  146 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCE-EECCC
T ss_pred             hhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCc-cccCC
Confidence                       111223345667789887664321     122333344578999999999 57655

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=8.2e-10  Score=90.60  Aligned_cols=95  Identities=18%  Similarity=0.184  Sum_probs=63.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccc--c--CCCCc--chhHHHHHHHHHhhcCCcEEEeCe
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--V--APDHP--ETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~--~--~p~~~--~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      ++|+||||||+|+.||.++.+.+  .+++|||++  +||.+...  .  .|.++  ....+...+..+.++.+++.....
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G--~~v~iie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKG--IRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ   77 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHcC--CeEEEEEEe--cCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccc
Confidence            68999999999999999999997  999999975  45544321  1  12221  223556666677777777766554


Q ss_pred             EEceE------------EecccceeccCeEEEeccCC
Q 019876           94 TLGSS------------VSLSELRQLYHVVVLAYGAE  118 (334)
Q Consensus        94 ~v~~~------------v~~~~~~~~yd~lIlATGs~  118 (334)
                      .+...            .........++.+++++|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  114 (184)
T d1fl2a1          78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (184)
T ss_dssp             CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             eeeeecccccccceeeeeeecceeeeccccccccccc
Confidence            33211            11122345788999999973

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.86  E-value=3.3e-09  Score=87.96  Aligned_cols=98  Identities=20%  Similarity=0.262  Sum_probs=69.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC----cccccc-----cc--CCCCcchhHHHHHHHHHhhcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP----FGLVRS-----GV--APDHPETKIVINQFSRVVQHER   86 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~----gg~~~~-----~~--~p~~~~~~~~~~~~~~~~~~~~   86 (334)
                      .+++|+||||||+|++||.+|++.+  .+++|+|+....    ++.+..     .+  .|......++...+.++..+++
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g   81 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFG   81 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcC--CcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhc
Confidence            3579999999999999999999997  999999976542    333221     01  1333445688888888888899


Q ss_pred             cEEEeCeEEc-------eEEecccceeccCeEEEeccC
Q 019876           87 CSFFGNVTLG-------SSVSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        87 i~~~~~~~v~-------~~v~~~~~~~~yd~lIlATGs  117 (334)
                      +++..+....       ..+........+|.+++|+|.
T Consensus        82 ~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~  119 (192)
T d1vdca1          82 TTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGA  119 (192)
T ss_dssp             CEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCE
T ss_pred             ceeeeeeEEecccccCcEEecccceeeeeeeEEEEeee
Confidence            9987664321       123333344578999999996

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=1.2e-09  Score=93.48  Aligned_cols=103  Identities=22%  Similarity=0.266  Sum_probs=65.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcC-CCCeEEEEcCCCCCcc-ccccccCCCCcc---------------------------
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFG-LVRSGVAPDHPE---------------------------   70 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~-~~~~v~vie~~~~~gg-~~~~~~~p~~~~---------------------------   70 (334)
                      .||+|||+||||++||.++++.+ .+.+|+|+|++. +|| ++++||.|.+.+                           
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~-~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~   80 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   80 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC-CCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCcee
Confidence            58999999999999999998876 246899999865 555 344454343110                           


Q ss_pred             -hhHH-----------HHHHHHHhhcCCcEEEeCeEE--c-------eE--Eecccc---eeccCeEEEeccCCCCCCCC
Q 019876           71 -TKIV-----------INQFSRVVQHERCSFFGNVTL--G-------SS--VSLSEL---RQLYHVVVLAYGAESDRALG  124 (334)
Q Consensus        71 -~~~~-----------~~~~~~~~~~~~i~~~~~~~v--~-------~~--v~~~~~---~~~yd~lIlATGs~~p~~~~  124 (334)
                       ...+           ...+...++..+++++.+...  .       ..  +...++   ++++|.+|+|||+ .|+.++
T Consensus        81 d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~-~p~~~~  159 (233)
T d1xdia1          81 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA-SPRILP  159 (233)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE-EECCCG
T ss_pred             eeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCc-cccccc
Confidence             0011           112344566778888776432  1       12  222222   3589999999999 577654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=2.7e-09  Score=82.04  Aligned_cols=69  Identities=14%  Similarity=0.249  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++++|||||++|+|+|..|++                    .|. +|||+.|. +++..|++ ++.            
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~--------------------lG~-~Vtii~~~-~~l~~~D~-~~~------------   63 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAG--------------------IGL-DVTVMVRS-ILLRGFDQ-DMA------------   63 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESS-SSSTTSCH-HHH------------
T ss_pred             CCCeEEEECCCccHHHHHHHHhh--------------------cCC-eEEEEEec-hhhccCCH-HHH------------
Confidence            46899999999999999999996                    787 59999875 56544433 222            


Q ss_pred             ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceee
Q 019876          238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL  295 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~  295 (334)
                                               +.+++.+.         ++||+|++++.++++.
T Consensus        64 -------------------------~~l~~~l~---------~~Gv~i~~~~~v~~~~   87 (122)
T d1h6va2          64 -------------------------NKIGEHME---------EHGIKFIRQFVPTKIE   87 (122)
T ss_dssp             -------------------------HHHHHHHH---------HTTEEEEESCEEEEEE
T ss_pred             -------------------------HHHHHHHH---------HCCCEEEECCEEEEEE
Confidence                                     23334432         6799999999999996

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.83  E-value=6.6e-09  Score=79.95  Aligned_cols=90  Identities=19%  Similarity=0.232  Sum_probs=68.6

Q ss_pred             cCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        14 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      .....+++++|||||+.|+.+|..+.+.|  .+|+|+++.+.+.        |.+  ..++...+.+.+++.||++++++
T Consensus        20 ~l~~~p~~~viiG~G~iglE~A~~~~~~G--~~Vtvi~~~~~~l--------~~~--d~~~~~~l~~~l~~~GI~i~~~~   87 (123)
T d1dxla2          20 ALSEIPKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFASEIV--------PTM--DAEIRKQFQRSLEKQGMKFKLKT   87 (123)
T ss_dssp             TCSSCCSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHSSCCEECSE
T ss_pred             CccccCCeEEEEccchHHHHHHHHHHhcC--CeEEEEEEccccC--------chh--hhcchhhhhhhhhcccceEEcCC
Confidence            33456789999999999999999999998  9999999987641        332  34678888899999999999998


Q ss_pred             EEce--------EEec--c-cc---eeccCeEEEec
Q 019876           94 TLGS--------SVSL--S-EL---RQLYHVVVLAY  115 (334)
Q Consensus        94 ~v~~--------~v~~--~-~~---~~~yd~lIlAT  115 (334)
                      .+..        .+.+  . ++   .+++|.|++|.
T Consensus        88 ~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          88 KVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            7631        2222  1 11   25789999873

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.82  E-value=5.6e-09  Score=91.30  Aligned_cols=37  Identities=24%  Similarity=0.414  Sum_probs=33.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ++++|+|||||.+|+++|.+|+++|  .+|+|+|+.+.+
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G--~~V~viE~~~~~   38 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDPP   38 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence            5789999999999999999999997  999999997543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.80  E-value=4.9e-09  Score=91.27  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=32.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+|+|||||.+|+++|.+|+++|  .+|+|+|+.+.
T Consensus         4 ~~DvvIIGaGi~Gls~A~~La~~G--~~V~vlE~~~~   38 (276)
T d1ryia1           4 HYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGTM   38 (276)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSST
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence            468999999999999999999997  99999999753

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=2e-08  Score=85.21  Aligned_cols=98  Identities=17%  Similarity=0.079  Sum_probs=61.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC-Ccccccc---cc-CCC---------CcchhHHHHHHHHHh-h
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVRS---GV-APD---------HPETKIVINQFSRVV-Q   83 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~-~gg~~~~---~~-~p~---------~~~~~~~~~~~~~~~-~   83 (334)
                      .++|+||||||||++||.++++.+  .++.||+++.. +|.+...   +. .++         -+........+++.+ .
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G--~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~   79 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKG--VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG   79 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC--CcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhh
Confidence            479999999999999999999997  99999998632 2322211   00 000         001111222233333 3


Q ss_pred             cCCcEEEeCeEEce--------EEecccc-eeccCeEEEeccCC
Q 019876           84 HERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE  118 (334)
Q Consensus        84 ~~~i~~~~~~~v~~--------~v~~~~~-~~~yd~lIlATGs~  118 (334)
                      ..+++++.+.+++.        .|.+.++ ++.++.||||||++
T Consensus        80 ~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          80 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             hcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            45788877766532        2334433 46899999999985

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.8e-09  Score=82.30  Aligned_cols=87  Identities=13%  Similarity=0.070  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++++|||||++|+|+|..|++                ..+..|. +|+++++.++++..+.++++.+           
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~----------------~~~~~g~-~Vt~i~~~~~~l~~~~~~~~~~-----------   87 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGR----------------KARALGT-EVIQLFPEKGNMGKILPEYLSN-----------   87 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHH----------------HHHHHTC-EEEEECSSSSTTTTTSCHHHHH-----------
T ss_pred             cCCEEEEECCCHHHHHHHHHHHH----------------HHHhcCC-EEEEecccccCCcccCCHHHHH-----------
Confidence            57899999999999999999874                1122465 6999999998876544443332           


Q ss_pred             ccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                                                .+.+.+.         ++||+|++++.+++|.  . +++++ .|.+++
T Consensus        88 --------------------------~~~~~l~---------~~GV~~~~~~~V~~i~--~-~~~~~-~v~l~~  122 (137)
T d1m6ia2          88 --------------------------WTMEKVR---------REGVKVMPNAIVQSVG--V-SSGKL-LIKLKD  122 (137)
T ss_dssp             --------------------------HHHHHHH---------TTTCEEECSCCEEEEE--E-ETTEE-EEEETT
T ss_pred             --------------------------HHHHHHH---------hCCcEEEeCCEEEEEE--e-cCCEE-EEEECC
Confidence                                      2333332         6799999999999998  5 23433 466655

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.71  E-value=8.1e-09  Score=87.03  Aligned_cols=37  Identities=24%  Similarity=0.507  Sum_probs=33.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..++|+||||||||++||.++++.+  .+|+|||+...+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G--~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLG--LKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC--CeEEEEecccCC
Confidence            5689999999999999999999997  999999986543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.70  E-value=3.7e-08  Score=87.22  Aligned_cols=41  Identities=37%  Similarity=0.499  Sum_probs=36.2

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      +....+|+|||+|++|++||..|++.|  .+|+|+|+.+..||
T Consensus        13 p~e~~DVlVIG~G~aGl~aA~~la~~G--~~V~lvEK~~~~gG   53 (308)
T d1y0pa2          13 PHDTVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGG   53 (308)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCT
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCC
Confidence            344689999999999999999999997  99999999877654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.70  E-value=6.9e-09  Score=78.83  Aligned_cols=63  Identities=16%  Similarity=0.246  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCH---HHHHHHHcCCceE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTA---KELREILGIKNLY  234 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~---~~~~~~l~~~gv~  234 (334)
                      .+++++|||||++|+|+|..|++                    .|. +||+++|.+++++.+++   +.+.+.|+..||+
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~--------------------~g~-~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~   78 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRK--------------------LGA-QVSVVEARERILPTYDSELTAPVAESLKKLGIA   78 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--------------------HTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHhh--------------------ccc-ceEEEeeeccccccccchhHHHHHHHHHhhcce
Confidence            45899999999999999999996                    676 69999999999988876   5667778889999


Q ss_pred             EEEccCc
Q 019876          235 VHIREDD  241 (334)
Q Consensus       235 ~~~~~~~  241 (334)
                      ++++...
T Consensus        79 i~~~~~V   85 (115)
T d1lvla2          79 LHLGHSV   85 (115)
T ss_dssp             EETTCEE
T ss_pred             EEcCcEE
Confidence            9988643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.70  E-value=3e-08  Score=85.30  Aligned_cols=38  Identities=32%  Similarity=0.470  Sum_probs=34.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ++.+||+||||||+|+++|..|++.|  ++|+|||+.+.+
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G--~~v~v~Er~~~~   39 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSPQP   39 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCC
Confidence            35689999999999999999999997  999999997654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=7.3e-09  Score=88.21  Aligned_cols=35  Identities=20%  Similarity=0.437  Sum_probs=32.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .++|+||||||||++||.++++.+  .+|+|||+.+.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G--~kV~viE~~~~   37 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFD--KKVMVLDFVTP   37 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGC--CCEEEECCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCC
Confidence            479999999999999999999997  99999997653

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2.8e-09  Score=90.49  Aligned_cols=42  Identities=21%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      ++++|+||||||||++||.++++.+  .+|+|||+.+.+||.+.
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G--~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCcceEeE
Confidence            4689999999999999999999997  99999999888888654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.5e-08  Score=80.16  Aligned_cols=51  Identities=25%  Similarity=0.307  Sum_probs=43.5

Q ss_pred             CCCCCCCCccCCCccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHccCC
Q 019876          120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPT  182 (334)
Q Consensus       120 p~~~~ipG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~~~  182 (334)
                      |+.|+|||.+.++|+++.+++.   .         ....+|+|+|||||++|+|+|..+++..
T Consensus         2 Pr~p~IpG~d~~~V~~a~d~L~---~---------~~~~gkrVvVIGgG~~g~d~a~~~~r~G   52 (162)
T d1ps9a2           2 PRTPPIDGIDHPKVLSYLDVLR---D---------KAPVGNKVAIIGCGGIGFDTAMYLSQPG   52 (162)
T ss_dssp             ECCCCCBTTTSTTEEEHHHHHT---S---------CCCCCSEEEEECCHHHHHHHHHHHTCCS
T ss_pred             CCCCCCCCCCCCCeEEHHHHhh---C---------ccccCCceEEEcCchhHHHHHHHHHHcC
Confidence            7889999999999999888763   1         1237899999999999999999999843

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.64  E-value=6.4e-08  Score=86.33  Aligned_cols=41  Identities=32%  Similarity=0.485  Sum_probs=35.9

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      .....+|+|||+|+||++||..|++.|  ++|+|+|+.+..||
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~G--~~V~llEk~~~~gG   60 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIPGG   60 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTTT--CCEEEECSSSSSCT
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence            344579999999999999999999997  99999999877654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.63  E-value=1.3e-08  Score=88.67  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=37.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      .|||+|||||+||++||.+|++.|  ++|+|||+++.+||.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G--~~V~vlE~~~~~GG~~~   41 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKLR   41 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--CCEEEEeCCCCCcCceE
Confidence            378999999999999999999997  99999999999999653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.63  E-value=2.6e-08  Score=87.99  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=29.9

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~   54 (334)
                      .||+|||||.+|+++|.+|++.+  . +|+|+|+++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G--~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRG--WNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcC--CCcEEEEeCCC
Confidence            48999999999999999999986  5 699999974

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.62  E-value=2.1e-08  Score=84.34  Aligned_cols=37  Identities=27%  Similarity=0.453  Sum_probs=33.1

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      .++|+||||||||++||.++++.+  .+|+|||+... ||
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G--~kV~vIEk~~~-GG   39 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKGNL-GG   39 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCT-TH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEecCCC-Cc
Confidence            479999999999999999999997  99999999754 44

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.62  E-value=1.6e-08  Score=89.51  Aligned_cols=44  Identities=36%  Similarity=0.455  Sum_probs=39.7

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ...++++|+|||||++||+||.+|++.|  ++|+|||+++.+||.+
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G--~~V~vlE~~~~~GG~~   69 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRV   69 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTC
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCee
Confidence            3456789999999999999999999997  9999999999999865

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.62  E-value=4.8e-08  Score=87.12  Aligned_cols=46  Identities=37%  Similarity=0.477  Sum_probs=38.3

Q ss_pred             ccccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcc
Q 019876           11 SFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG   58 (334)
Q Consensus        11 ~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg   58 (334)
                      +....+....+|+|||+|++|++||..+++.+  .+|+|+||.+..+|
T Consensus        11 ~~~~~~~e~~DVvVIGaG~aGl~AA~~aa~~G--~~V~vlEK~~~~gG   56 (317)
T d1qo8a2          11 AIAAGPSETTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGG   56 (317)
T ss_dssp             HHHTCCSEEEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCT
T ss_pred             hccCCCCCccCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence            34444455689999999999999999999997  99999999876544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.4e-08  Score=88.13  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=38.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      .++.||||||||+|||+||..|.+.|  ++|+|+|+++.+||.+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G--~~V~VlEa~~r~GGr~   44 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV   44 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCcccE
Confidence            35678999999999999999999997  9999999999999865

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.57  E-value=7.6e-08  Score=82.18  Aligned_cols=37  Identities=30%  Similarity=0.320  Sum_probs=33.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...+||||||||++|+++|..|++++  .+|+|||++..
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G--~~V~vier~~~   40 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKG--YSVHILARDLP   40 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCT
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence            35679999999999999999999997  89999999754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.57  E-value=2.2e-08  Score=86.99  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=37.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      |||+|||||++|++||..|.+.|  ++|+|+|+++.+||.+.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~   40 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVG   40 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCceEE
Confidence            68999999999999999999997  99999999999998653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.57  E-value=2.3e-08  Score=84.88  Aligned_cols=40  Identities=28%  Similarity=0.328  Sum_probs=36.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCCccccc
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVR   61 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~gg~~~   61 (334)
                      .||+|||||+|||+||..|+++|  + +|+|||+++.+||.+.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G--~~~V~vlE~~~~~GG~~~   41 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMH   41 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCC--CCcEEEEECCCCCCceEE
Confidence            48999999999999999999997  6 6999999999998764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.56  E-value=1.8e-07  Score=81.73  Aligned_cols=43  Identities=35%  Similarity=0.403  Sum_probs=37.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhh-cCCCCeEEEEcCCCCCcccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~-~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      ...+|+||||||+|++||..|++ .|  ++|+|||+.+.+||.+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G--~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccC--CeEEEEecCCCCCCceee
Confidence            35789999999999999999976 46  999999999988887765

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.55  E-value=2.3e-08  Score=81.88  Aligned_cols=100  Identities=19%  Similarity=0.139  Sum_probs=59.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCC-cchhHHHHHHHHHhhcCCcEEEeCeEEc--
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-PETKIVINQFSRVVQHERCSFFGNVTLG--   96 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~--   96 (334)
                      .+|+|||||++|+.+|..|++.+.+..+++++++...  .+.....+.. .................+++++.+..+.  
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i   81 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER--PYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   81 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC--CBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEeccccc--chhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccc
Confidence            4699999999999999999999866677777655432  1111000100 0000000001123345678888886542  


Q ss_pred             ----eEEecccc-eeccCeEEEeccCCCCCC
Q 019876           97 ----SSVSLSEL-RQLYHVVVLAYGAESDRA  122 (334)
Q Consensus        97 ----~~v~~~~~-~~~yd~lIlATGs~~p~~  122 (334)
                          ..+.+.++ +++||.||+|+|. .|+.
T Consensus        82 ~~~~~~~~~~~g~~~~~D~vi~a~G~-~p~~  111 (183)
T d1d7ya1          82 DPQAHTVALSDGRTLPYGTLVLATGA-APRA  111 (183)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCE-EECC
T ss_pred             ccccceeEecCCcEeeeeeEEEEEEE-Eccc
Confidence                13444444 4589999999998 4654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=3.5e-08  Score=83.21  Aligned_cols=42  Identities=19%  Similarity=0.078  Sum_probs=38.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      +.++|||||||++|++||..|++.|  .+|+|+|+++.+||.+.
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~GG~~~   45 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAA   45 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCcceE
Confidence            5689999999999999999999997  99999999999999763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.46  E-value=7.2e-08  Score=86.04  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=37.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      .++|+|||||++|++||..|++.|  .+|+|+|+++.+||.+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G--~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCC--CCEEEEECCCCCcCee
Confidence            579999999999999999999987  9999999999999976

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=8.1e-08  Score=85.01  Aligned_cols=40  Identities=25%  Similarity=0.209  Sum_probs=37.3

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      +.+|+|||||++|++||..|++.|  .+|+|||+++.+||.+
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g--~~V~iiEk~~~iGG~~   40 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNA   40 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGG
T ss_pred             CccEEEECCcHHHHHHHHHHHhCC--CcEEEEECCCCcccce
Confidence            468999999999999999999987  9999999999999976

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=9.6e-07  Score=78.33  Aligned_cols=38  Identities=24%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||+|+||++||..+.+.+++.+|+|+||.+..
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            36899999999999999999998777999999997643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2e-07  Score=82.82  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=35.8

Q ss_pred             eEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        21 ~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      +|+|||||++||+||..|++.|  .+|+|+|+++.+||.+
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G--~~V~VlE~~~~~GGr~   38 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRT   38 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTT--CCEEEEESSSSSBTTC
T ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCccee
Confidence            6999999999999999999997  9999999999999865

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.31  E-value=1.6e-07  Score=79.47  Aligned_cols=41  Identities=29%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~   60 (334)
                      ..++|+||||||||++||.+|++.+  .+|+|||+.+.+||.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G--~~V~viE~~~~~GG~~   45 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYKTLGGVC   45 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSCSSHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccCCCCCee
Confidence            4589999999999999999999997  9999999988887753

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.26  E-value=8.8e-07  Score=71.78  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ...+|||||||++|+.+|..|++.++...|+++++.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            3579999999999999999999998444555555543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.25  E-value=1.5e-06  Score=69.03  Aligned_cols=68  Identities=15%  Similarity=0.047  Sum_probs=50.3

Q ss_pred             CCCCeEEEE--CCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeE
Q 019876           17 SNPLRVCVV--GSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT   94 (334)
Q Consensus        17 ~~~~~vvII--GaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~   94 (334)
                      .....++|+  |||+.|+.+|..|++.|  .+|+|+++.+.++...          .......+.+.+.+.|+++++++.
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G--~~Vtlv~~~~~~~~~~----------~~~~~~~~~~~l~~~GV~i~~~~~  104 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVHLANYMH----------FTLEYPNMMRRLHELHVEELGDHF  104 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSCTTTHHH----------HTTCHHHHHHHHHHTTCEEEETEE
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcC--CeEEEEecCCcccccc----------chhHHHHHHHHHhhccceEEeccE
Confidence            345566666  99999999999999998  9999999987643211          112334555666778999999987


Q ss_pred             Ec
Q 019876           95 LG   96 (334)
Q Consensus        95 v~   96 (334)
                      +.
T Consensus       105 v~  106 (156)
T d1djqa2         105 CS  106 (156)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.23  E-value=9.8e-07  Score=76.91  Aligned_cols=34  Identities=26%  Similarity=0.486  Sum_probs=31.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      .+|+||||||+|+++|..|++.|  ++|+|+|+.+.
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G--~~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP   36 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence            48999999999999999999997  99999999853

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=5.2e-07  Score=80.00  Aligned_cols=45  Identities=27%  Similarity=0.277  Sum_probs=39.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCcccccc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS   62 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~   62 (334)
                      ..++|+||||||+|++||.+|+++.++++|+|||+++.+||.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            357899999999999999999986556999999999999988766

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=3.8e-06  Score=74.85  Aligned_cols=38  Identities=16%  Similarity=0.292  Sum_probs=33.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCc
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF   57 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~g   57 (334)
                      +..+|+|||+|+||++||..+.+.+  .+|+|+||.+..+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G--~~V~lleK~~~~g   43 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPTR   43 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTT--CCCEEECSSCGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcC--CeEEEEeCCCCCC
Confidence            4579999999999999999999997  8999999986543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.07  E-value=1.8e-06  Score=74.21  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=32.6

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~~~   56 (334)
                      +++|+||||||||+++|..|++.|  . +|+|+|+.+.+
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~G--i~~V~V~Er~~~~   37 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEI   37 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--CCeEEEEeCCCCC
Confidence            479999999999999999999986  6 89999998765

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.02  E-value=9.8e-07  Score=74.91  Aligned_cols=37  Identities=22%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +.++|+|||+||||++||.++++.+ ...|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g-~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLH-KKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcC-CCEEEEEEEecc
Confidence            5689999999999999999999986 236899998754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.4e-05  Score=61.97  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcC
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAH   42 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~   42 (334)
                      .....++|+|||||..|+.+|..+.+.|
T Consensus        25 ~~~~gkrVvVIGgG~~g~d~a~~~~r~G   52 (162)
T d1ps9a2          25 KAPVGNKVAIIGCGGIGFDTAMYLSQPG   52 (162)
T ss_dssp             CCCCCSEEEEECCHHHHHHHHHHHTCCS
T ss_pred             ccccCCceEEEcCchhHHHHHHHHHHcC
Confidence            3456789999999999999999999987

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.99  E-value=2.5e-06  Score=77.81  Aligned_cols=39  Identities=23%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhc----CCCCeEEEEcCCCCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKA----HQEAQVDIIDRLPTPF   57 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~----~~~~~v~vie~~~~~g   57 (334)
                      .++||||||||||++||..|++.    ..+++|+|+|+...+|
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG   74 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   74 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence            47999999999999999999872    2359999999987764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.98  E-value=1.2e-06  Score=65.09  Aligned_cols=38  Identities=16%  Similarity=0.152  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       157 ~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +++|+|+|||+|++|+|+|..|+.                     -+++|+++.|++..
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~---------------------~ak~v~~~~~r~~~   67 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTP---------------------VAKHPIYQSLLGGG   67 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTT---------------------TSCSSEEEECTTCC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHH---------------------hcCEEEEEEecCcc
Confidence            379999999999999999999996                     55678888887643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=3.7e-06  Score=68.29  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=33.4

Q ss_pred             CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       157 ~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..+|+|+|||+|+.|+++|..|++                    .|. +|+|+++.+.+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~--------------------~G~-~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA--------------------RGH-QVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT--------------------TTC-EEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh--------------------hcc-ceEEEeccCcc
Confidence            367999999999999999999996                    565 69999998755

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=97.81  E-value=6.2e-06  Score=73.18  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+|+|||+|+||++||.++++.|  .+|+|+|+.+..
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G--~~V~liEK~~~~   40 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVK   40 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGG
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCC
Confidence            368999999999999999999997  999999998654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.79  E-value=7e-06  Score=68.75  Aligned_cols=50  Identities=14%  Similarity=0.248  Sum_probs=34.9

Q ss_pred             CCCCCCCCcc-CCC-ccchhhHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          120 DRALGIPGED-LIG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       120 p~~~~ipG~~-~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      |+.|.+||.+ .+| ++++.++.   ...        ...++|+|+|||+|.+|+|+|..+++
T Consensus         2 P~iP~~pG~e~F~G~v~HS~~~~---~~~--------~~~~gK~V~VvG~G~Sa~dia~~~~~   53 (235)
T d1w4xa2           2 PQLPNFPGLKDFAGNLYHTGNWP---HEP--------VDFSGQRVGVIGTGSSGIQVSPQIAK   53 (235)
T ss_dssp             CCCCCCTTGGGCCSEEEEGGGCC---SSC--------CCCBTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCCCChhhCCCcEEecCcCC---CCC--------CCCCCCEEEEECCCccHHHHHHHHHh
Confidence            7788999986 343 33332221   010        12379999999999999999999986

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.79  E-value=1.2e-05  Score=67.34  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=30.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +.++|+||||||||++||.++++.+ ...|+|+|+.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g-~k~V~iie~~   36 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLY-KKRVAVIDVQ   36 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTS-CCCEEEEESC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcC-CCEEEEEEee
Confidence            5789999999999999999999986 3468899875

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.78  E-value=4.2e-06  Score=74.39  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhh-----cCCCCeEEEEcCCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLK-----AHQEAQVDIIDRLPTP   56 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~-----~~~~~~v~vie~~~~~   56 (334)
                      ++.++|+||||||+|+++|..|++     .|  ++|+|||+.+.+
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G--~~v~vlEr~~~~   47 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCC--CcEEEEcCCCCC
Confidence            356899999999999999999964     44  999999998654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.77  E-value=7.5e-06  Score=66.65  Aligned_cols=38  Identities=18%  Similarity=0.332  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .+|||+|||||++|+++|..|++                    .|.++|+|++|++.+
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~--------------------~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLAR--------------------LGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH--------------------TTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHH--------------------CCCCeEEEEEecCcc
Confidence            46999999999999999999997                    787679999999765

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.76  E-value=5.7e-05  Score=59.43  Aligned_cols=38  Identities=26%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+++|||||||.+|+-+|.++.+.+ -..|+++.+++.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~G-A~~V~vi~rr~~   80 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCG-ARRVFLVFRKGF   80 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTT-CSEEEEECSSCG
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcC-CcceeEEEeCCh
Confidence            34679999999999999999999986 346889987653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.59  E-value=3.9e-05  Score=62.74  Aligned_cols=36  Identities=11%  Similarity=0.183  Sum_probs=29.0

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ||+|||||++|+|+|..|++.                   ....+|++++|.+.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~-------------------~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNL-------------------HPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHH-------------------CTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhc-------------------CCCCeEEEEeCCCcc
Confidence            699999999999999999861                   122469999987654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.58  E-value=4.3e-05  Score=60.79  Aligned_cols=46  Identities=15%  Similarity=0.195  Sum_probs=36.6

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCC-cceEEEEeecCccccCCCHHHH
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGPVQAACTAKEL  224 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~Vtiv~r~~~~~~~~~~~~~  224 (334)
                      +|||||||||++|+|+|..|.+                    .+ -.+||++++++.+.........
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~--------------------~~~~~~Vtlie~~~~~~~~~~~~~~   48 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKL--------------------ADPSIEVTLIEPNTDYYTCYLSNEV   48 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--------------------HCTTSEEEEECSCSCEECSTTHHHH
T ss_pred             CCcEEEECccHHHHHHHHHHHH--------------------cCCCCcEEEEECCCccccccccccc
Confidence            7999999999999999999986                    23 2369999999877665555433

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.55  E-value=5.1e-05  Score=59.98  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=28.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .||+|||||++|+|+|..|++                     +. +||++++++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~---------------------~~-~Vtvv~~~~~   33 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ---------------------TY-EVTVIDKEPV   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT---------------------TS-EEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc---------------------CC-CEEEEecccc
Confidence            389999999999999999974                     44 6999998763

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.9e-05  Score=68.02  Aligned_cols=41  Identities=27%  Similarity=0.380  Sum_probs=33.2

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccc
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL   59 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~   59 (334)
                      ++...+|+|||+|+||++||.++++.   .+|+|+||.+..||.
T Consensus         4 p~~~~DVvVVG~G~AGl~AA~~a~~~---g~V~llEK~~~~gG~   44 (305)
T d1chua2           4 PEHSCDVLIIGSGAAGLSLALRLADQ---HQVIVLSKGPVTEGS   44 (305)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHTTT---SCEEEECSSCTTC--
T ss_pred             CcccCCEEEECccHHHHHHHHHhhcC---CCEEEEECCCCCCCc
Confidence            34468999999999999999998775   389999998876554

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.53  E-value=4.2e-05  Score=64.55  Aligned_cols=111  Identities=10%  Similarity=0.108  Sum_probs=66.1

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcccc--------------CC-------
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA--------------AC-------  219 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~--------------~~-------  219 (334)
                      .|+|||+|.+|+-+|..|++                    .|. +|+|+++.+.+..              ..       
T Consensus         4 DViIIGaG~aGl~aA~~la~--------------------~G~-~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   62 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAE--------------------EGA-NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK   62 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCCCcceeccCCcceecccccccchhhc
Confidence            49999999999999999996                    676 5999998753310              00       


Q ss_pred             ----------------CHHHHHHHHcCCceEEEEccCccCCCCCchhhhhccHHHHHHHHHHHHHHhccCCCCCCCceEE
Q 019876          220 ----------------TAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL  283 (334)
Q Consensus       220 ----------------~~~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  283 (334)
                                      ....+...+...|+.........-..        .....+.+.+.|.+.+.         +.||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~i~~~L~~~~~---------~~gv  125 (251)
T d2i0za1          63 HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFP--------VSNKAQSVVDALLTRLK---------DLGV  125 (251)
T ss_dssp             TCTBTGGGGHHHHHHSCHHHHHHHHHHTTCCEEECGGGEEEE--------TTCCHHHHHHHHHHHHH---------HTTC
T ss_pred             ccccchhhhhhhhhhhhhHHHHHHHHhcCCccccccccceec--------ccccHHHHHHHHHHHHH---------HcCC
Confidence                            01122233344454444332211000        01111223334444443         5689


Q ss_pred             EEEeccccceeeccccCCCCeeEEEEEEe
Q 019876          284 HFVFFRKPDSFLESNERSGHVSGVHFEKT  312 (334)
Q Consensus       284 ~~~~~~~~~~i~~~~~~~~~v~~v~~~~~  312 (334)
                      ++++++.+++|.  . +++++.+|.+++.
T Consensus       126 ~i~~~~~v~~i~--~-~~~~~~~v~~~~g  151 (251)
T d2i0za1         126 KIRTNTPVETIE--Y-ENGQTKAVILQTG  151 (251)
T ss_dssp             EEECSCCEEEEE--E-ETTEEEEEEETTC
T ss_pred             cccCCcEEEEEE--E-ECCEEEEEEeCCC
Confidence            999999999997  4 3678888887654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00056  Score=51.62  Aligned_cols=85  Identities=22%  Similarity=0.232  Sum_probs=60.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|-+++..|.+|.+..  .+|+++-+.+..            ...+.....+.+..++.++.++.++.+..
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a--~~V~li~r~~~~------------~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   91 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGF------------RAEKILIKRLMDKVENGNIILHTNRTLEE   91 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSC------------CCCHHHHHHHHHHHHTSSEEEECSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcC--CcEEEEeecccc------------cchhHHHHHHHHhhcccceeEecceEEEE
Confidence            5789999999999999999999986  899999887532            12234556666666777888888765521


Q ss_pred             ---------EEeccc-------ceeccCeEEEecc
Q 019876           98 ---------SVSLSE-------LRQLYHVVVLAYG  116 (334)
Q Consensus        98 ---------~v~~~~-------~~~~yd~lIlATG  116 (334)
                               .+.+.+       ..++.|.|+++.|
T Consensus        92 i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          92 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             EECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence                     122221       1246788888876

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.50  E-value=4.1e-05  Score=68.19  Aligned_cols=39  Identities=13%  Similarity=0.175  Sum_probs=32.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhc--CCCCeEEEEcCCCCCc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPTPF   57 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~--~~~~~v~vie~~~~~g   57 (334)
                      ..+|+|||+|+||++||..|++.  .++++|+|+||.+..|
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            36999999999999999998752  1359999999987654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.45  E-value=4.8e-05  Score=67.85  Aligned_cols=37  Identities=30%  Similarity=0.333  Sum_probs=32.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP   56 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~   56 (334)
                      ..+++||||+|++|+.+|..|.+.+  .+|+|+|+....
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G--~kVlvLEaG~~~   39 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEID   39 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCC
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCC--CeEEEEecCCCC
Confidence            4579999999999999999999986  999999986543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.26  E-value=2e-05  Score=66.00  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=28.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCC----CeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQE----AQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~----~~v~vie~~~   54 (334)
                      |||+|||||.+|+++|.+|+++++.    .+++++++..
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            6899999999999999999999732    2566666553

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.24  E-value=0.00031  Score=59.40  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=29.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..|+|||+|.+|+-+|..|++                    .|. +|+|+++.+.
T Consensus         5 ~DViIIGaG~aGl~aA~~la~--------------------~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAK--------------------LGK-SVTVFDNGKK   38 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEecCCC
Confidence            469999999999999999996                    675 5999998754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.20  E-value=0.00016  Score=55.13  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=30.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|+|+|+|..|...|..|.+.+  .+|+++|+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g--~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CCcceecCCh
Confidence            79999999999999999999987  9999999863

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.19  E-value=0.00015  Score=57.98  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=21.4

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHcc
Q 019876          158 STDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .+++|||||||++|+|+|..|++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~   24 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRA   24 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH
Confidence            46899999999999999999996

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.18  E-value=1.9e-05  Score=63.72  Aligned_cols=40  Identities=13%  Similarity=0.170  Sum_probs=30.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT  220 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~  220 (334)
                      .+|+|||||++|+|+|..|.+                    .+. +|+++.+++..+.++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~--------------------~g~-~v~i~~~~~~~~~~~~   43 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQ--------------------AGY-QGLITVVGDEAERPYD   43 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHH--------------------HTC-CSCEEEEESSCSCCBC
T ss_pred             CCEEEECccHHHHHHHHHHHh--------------------cCC-ceEEEEEecccccchh
Confidence            469999999999999999986                    454 4677766665544443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.07  E-value=0.00022  Score=60.76  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      +|+|+|||+|..|+-+|..|++                    .|. +|+|+++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~--------------------~G~-~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI--------------------HGL-NVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--------------------TSC-EEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--------------------CCC-CEEEEeCCCC
Confidence            5899999999999999999996                    676 6999998764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00028  Score=50.27  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +.++|+|+|.|-+|+++|.+|.+.+  .+|+++|.++.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g--~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTT--CCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCC--CEEEEeeCCcC
Confidence            4679999999999999999999997  99999998653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0027  Score=47.69  Aligned_cols=82  Identities=13%  Similarity=0.183  Sum_probs=56.0

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ..++|+|||+|-+++..|.+|.+..  .+|+|+-+.+...            ..+...   .+..+..+|+++.++.+..
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a--~~V~li~r~~~~~------------~~~~~~---~~~~~~~~I~v~~~~~v~~   91 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK------------ADQVLQ---DKLRSLKNVDIILNAQTTE   91 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTB--SEEEEECSSSSCC------------SCHHHH---HHHHTCTTEEEESSEEEEE
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccC--CceEEEecccccc------------cccccc---cccccccceeEEcCcceEE
Confidence            5789999999999999999999986  7999998875421            112222   2333445799988876521


Q ss_pred             ---------EEeccc---c---eeccCeEEEecc
Q 019876           98 ---------SVSLSE---L---RQLYHVVVLAYG  116 (334)
Q Consensus        98 ---------~v~~~~---~---~~~yd~lIlATG  116 (334)
                               .+.+.+   +   +++.|.|+++.|
T Consensus        92 i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          92 VKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             EEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence                     122221   1   247899999887

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.00  E-value=0.00027  Score=63.01  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .+|||||+|++|+.+|..|.+.+  .+|+|+|+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAG--VQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCc--CeEEEEecCC
Confidence            37999999999999999999987  9999999863

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00019  Score=58.00  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      +.++|+|||||++|+++|..+++                    .|. +|+||++..+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar--------------------~g~-~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAAR--------------------ANL-QPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT--------------------TTC-CCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--------------------cCC-ceEEEEeecc
Confidence            46789999999999999999997                    676 5999987653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.90  E-value=0.00034  Score=62.44  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=31.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .+.++||||+|++|+.+|..|.+.+  .+|+|+|+.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAG--IPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCC
Confidence            4579999999999999999999987  999999985

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=96.88  E-value=0.00037  Score=62.28  Aligned_cols=35  Identities=29%  Similarity=0.535  Sum_probs=31.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +.+++||||+|+||..+|..|.+.+  .+|.|+|+..
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g--~~VlvLEaG~   35 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAG--KKVLLLERGG   35 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCC--CeEEEEEccC
Confidence            3589999999999999999999986  8999999874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.0004  Score=52.78  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=30.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++++|||+|..|..+|..|.+.+  .+|+++|.++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g--~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CeEEEecCcH
Confidence            57999999999999999999997  9999999863

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.80  E-value=0.00058  Score=54.02  Aligned_cols=34  Identities=21%  Similarity=0.116  Sum_probs=31.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|+|||||..|..+|.+|.+.+  ++|+|++++.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g--~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSG--IKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTT--CEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCh
Confidence            579999999999999999999997  8999999874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.80  E-value=0.0016  Score=56.81  Aligned_cols=30  Identities=27%  Similarity=0.371  Sum_probs=24.8

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                      +.|+++++++.+++++.  +++|+|.+|.+.+
T Consensus       164 ~~gv~i~~~t~v~~li~--d~~G~V~Gv~~~~  193 (322)
T d1d4ca2         164 KRGTDIRLNSRVVRILE--DASGKVTGVLVKG  193 (322)
T ss_dssp             HTTCEEETTEEEEEEEC--CSSSCCCEEEEEE
T ss_pred             hcCceEEEeeecccccc--cccccccceEEEe
Confidence            56899999999999873  2478999998875

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.80  E-value=0.00037  Score=57.74  Aligned_cols=35  Identities=14%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|+|||||.+|+-+|..|++                    .|.++|+|+++++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~--------------------~G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSE--------------------AGITDLLILEATDHI   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHH--------------------TTCCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHh--------------------CCCCcEEEEECCCCC
Confidence            69999999999999999996                    676679999998643

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.73  E-value=0.0021  Score=55.47  Aligned_cols=30  Identities=17%  Similarity=0.354  Sum_probs=24.8

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                      +.|+++++++.+++++.  +++|+|.+|.+.+
T Consensus       157 ~~gv~i~~~~~v~~li~--~~~G~V~Gv~~~~  186 (308)
T d1y0pa2         157 KRNIDLRMNTRGIEVLK--DDKGTVKGILVKG  186 (308)
T ss_dssp             HTTCEEESSEEEEEEEE--CTTSCEEEEEEEE
T ss_pred             hccceEEEeeccchhhh--hcccccccccccc
Confidence            56899999999999873  2468999999875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.65  E-value=0.00098  Score=53.06  Aligned_cols=34  Identities=21%  Similarity=0.049  Sum_probs=31.2

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++|+|||+|..|..+|..|.+.|  ++|+++++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G--~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC--CEEEEEECCH
Confidence            379999999999999999999997  9999999863

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=96.64  E-value=0.00064  Score=61.44  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +.+++||||||+||..+|..|.+.+ +.+|.|+|+.+.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~-~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENP-KIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTST-TCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCC-CCeEEEEcCCCC
Confidence            4599999999999999999999874 689999999854

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.63  E-value=0.00088  Score=54.75  Aligned_cols=86  Identities=19%  Similarity=0.119  Sum_probs=52.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV   99 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v   99 (334)
                      |+|.|||.|..|+..|..|++.|  ++|+.+|.+...-..+..+..|.+.  ....+.+..........+..        
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g--~~V~g~D~n~~~i~~ln~g~~p~~e--~~~~~~l~~~~~~~~~~~~~--------   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGKSPIVE--PGLEALLQQGRQTGRLSGTT--------   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTCCSSCC--TTHHHHHHHHHHTTCEEEES--------
T ss_pred             CEEEEECCCHhHHHHHHHHHhCC--CcEEEEeCCHHHHHHhcccCCcccc--hhhhhhhhhhhcccccccCC--------
Confidence            78999999999999999999997  9999999875432223333333221  12223333333332222211        


Q ss_pred             ecccceeccCeEEEeccC
Q 019876          100 SLSELRQLYHVVVLAYGA  117 (334)
Q Consensus       100 ~~~~~~~~yd~lIlATGs  117 (334)
                      +..+....+|.+++|.+.
T Consensus        69 ~~~~~i~~~d~i~i~VpT   86 (202)
T d1mv8a2          69 DFKKAVLDSDVSFICVGT   86 (202)
T ss_dssp             CHHHHHHTCSEEEECCCC
T ss_pred             CHHHHHhhCCEEEEecCc
Confidence            111222368999999987

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.56  E-value=0.00075  Score=58.23  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ..|+|+|||+|.+|+-+|..|++                    .|. +|+|+++++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~--------------------~G~-~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAG--------------------AGH-QVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH--------------------HTC-EEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence            67899999999999999999996                    575 6999998753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00089  Score=57.54  Aligned_cols=37  Identities=32%  Similarity=0.438  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +.++|+|||+|.+|+-+|..|++                    .|. +|+|+++++++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~--------------------~G~-~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQS--------------------FGM-DVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHH--------------------TTC-EEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEeCCCCC
Confidence            55789999999999999999996                    676 69999998754

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0026  Score=52.18  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..++||||||++|+++|..|.+                   .....+|+++.+..
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~-------------------~~~~~~I~li~~e~   39 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRA-------------------RDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHH-------------------HSTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHh-------------------cCCCCcEEEEeCCC
Confidence            3578999999999999999975                   11223699998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0014  Score=51.17  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      |||+|||+|..|...|..|.+.|  .+|+++++.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHH
Confidence            79999999999999999999997  99999998764

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.52  E-value=0.00082  Score=60.49  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=32.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +.+++||||+|+||+.+|..|.+.+ +.+|.|+|+.+.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~-~~~VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENP-NISVLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTST-TCCEEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCC-CCeEEEECCCCC
Confidence            3589999999999999999998864 689999998753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.47  E-value=0.0016  Score=54.50  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ..+||+|||+|..|+-+|..|++                    .|. +|+|++|++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~--------------------~G~-~v~v~Er~~~~   39 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRD--------------------AGV-DVDVYERSPQP   39 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCCC
Confidence            46899999999999999999996                    687 69999997543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.46  E-value=0.0013  Score=57.57  Aligned_cols=36  Identities=19%  Similarity=0.363  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|+|||||.+|+-+|..|++                    .|. +|+|+++++.+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k--------------------~G~-~V~viEk~~~i   37 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAE--------------------KGH-QVHIIDQRDHI   37 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--------------------TTC-EEEEEESSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--------------------CCC-CEEEEECCCCC
Confidence            5899999999999999999996                    564 79999999765

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.43  E-value=0.0048  Score=46.55  Aligned_cols=61  Identities=21%  Similarity=0.239  Sum_probs=46.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEE
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL   95 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   95 (334)
                      +.++|+|||+|-+++..|.+|.+.-  -+|+++-+.+.+.        .    .+..   ..+..+..+|+++.++.+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a--~~V~li~r~~~~r--------a----~~~~---~~~l~~~~nI~v~~~~~v   93 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDAFR--------A----SKIM---QQRALSNPKIDVIWNSSV   93 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------S----CHHH---HHHHHTCTTEEEECSEEE
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCC--CcEEEEEeccccc--------c----chhh---hhccccCCceEEEeccEE
Confidence            5789999999999999999999986  8999998876531        1    1222   233445667999888765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.42  E-value=0.0017  Score=54.04  Aligned_cols=38  Identities=29%  Similarity=0.492  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       157 ~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ...++|+|||||..|+.+|..|++                    .|. +|+|+++++.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~--------------------~G~-~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLME--------------------SGY-TVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHH--------------------hcc-ceeeEeecccc
Confidence            468999999999999999999996                    676 69999998765

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.32  E-value=0.0018  Score=53.83  Aligned_cols=35  Identities=34%  Similarity=0.470  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..++|+|||+|.+|+-+|..|++                    .|. +|+|++|..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~--------------------~G~-~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILAR--------------------KGY-SVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHH--------------------CCC-CEEEEeCCC
Confidence            45799999999999999999996                    676 699999863

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.32  E-value=0.0025  Score=50.85  Aligned_cols=36  Identities=31%  Similarity=0.326  Sum_probs=32.6

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++-+|+|||+|.+|+.|+..+.+.|  ..|+++|.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHH
Confidence            3579999999999999999999998  99999998753

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.32  E-value=0.00096  Score=59.30  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..+++||||+|+||+.+|..|.+.   .+|.|+|+.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~---~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK---YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT---SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC---CCEEEEecCCC
Confidence            347999999999999999999874   79999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.27  E-value=0.0025  Score=50.10  Aligned_cols=34  Identities=32%  Similarity=0.430  Sum_probs=31.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .+-+|+|||+|.+|+.|+..+++.|  .+|+++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCc
Confidence            4679999999999999999999998  999999976

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.26  E-value=0.0023  Score=52.74  Aligned_cols=69  Identities=16%  Similarity=0.070  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccc-------cCCC------HHHHH
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-------AACT------AKELR  225 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~-------~~~~------~~~~~  225 (334)
                      ..+|+|||+|.+|+.+|..|++....             ....+. +|||+++.+.+-       .++.      .....
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~-------------~~~~~~-~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~   67 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADT-------------TEDLDM-AVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFE   67 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHH-------------STTCCE-EEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCc-------------cccCCC-ceEEEecCCCCCCeeeeccCcccccchhhhhhhh
Confidence            35899999999999999999861000             000123 699999985321       1221      24555


Q ss_pred             HHHcCCceEEEEccCc
Q 019876          226 EILGIKNLYVHIREDD  241 (334)
Q Consensus       226 ~~l~~~gv~~~~~~~~  241 (334)
                      ..+...|++++.+...
T Consensus        68 ~~~~~~g~~~~~~~~v   83 (239)
T d1lqta2          68 KTAEDPRFRFFGNVVV   83 (239)
T ss_dssp             HHHTSTTEEEEESCCB
T ss_pred             hhhccCCceEEEEEEe
Confidence            6778899999998654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.23  E-value=0.0016  Score=55.05  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|+|||+|..|+-+|..|++                    .|. +|+|+++++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~--------------------~G~-~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRS--------------------RGT-DAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHT--------------------TTC-CEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCCC
Confidence            69999999999999999996                    676 59999997643

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.23  E-value=0.0024  Score=55.97  Aligned_cols=38  Identities=32%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCc-ceEEEEeecCcc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI-RKVYLVGRRGPV  215 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~Vtiv~r~~~~  215 (334)
                      .-|+|+|||||.+|+-+|..|++                    .+. .+|+|++|++.+
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~--------------------~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLA--------------------EKAFDQVTLFERRGSP   41 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT--------------------TTCCSEEEEECSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--------------------hCCCCCEEEEECCCCC
Confidence            34899999999999999999875                    332 479999999754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0019  Score=50.00  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .+|+|+|||||.+|.+-|..|.+                    .|+ +||++...
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~--------------------~GA-~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMP--------------------TGC-KLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG--------------------GTC-EEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEEeCC
Confidence            78999999999999999999996                    687 59999654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0015  Score=50.59  Aligned_cols=35  Identities=14%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      -..++++|||||..|+..|..|.+.|  .+|+|+.++
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~G--A~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence            45789999999999999999999997  999999764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.15  E-value=0.0015  Score=52.66  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .++|+|||||++|+++|..+++                    .|. +|.++++...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar--------------------~g~-~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAAR--------------------AEL-KPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--------------------TTC-CCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEEeecc
Confidence            4789999999999999999996                    676 4889986643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.15  E-value=0.007  Score=44.20  Aligned_cols=54  Identities=19%  Similarity=0.183  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+|+|+|||+|.+|..-|+.|.+                    .|+ +|+++...       ..+++....+..+++++-
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~--------------------~ga-~v~v~~~~-------~~~~~~~~~~~~~i~~~~   62 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLE--------------------AGA-RLTVNALT-------FIPQFTVWANEGMLTLVE   62 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--------------------TTB-EEEEEESS-------CCHHHHHHHTTTSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecc-------CChHHHHHHhcCCceeec
Confidence            68999999999999999999996                    687 59988543       235666777777788776


Q ss_pred             cc
Q 019876          238 RE  239 (334)
Q Consensus       238 ~~  239 (334)
                      ..
T Consensus        63 ~~   64 (113)
T d1pjqa1          63 GP   64 (113)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.15  E-value=0.011  Score=45.41  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=29.5

Q ss_pred             CeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |||.|||| |..|.++|..|...+--.++.|+|..+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            68999996 999999999998876335899998753

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0022  Score=50.79  Aligned_cols=31  Identities=29%  Similarity=0.438  Sum_probs=27.3

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .|+|||||++|+++|..+++                    .|. +|++|+++
T Consensus         3 DViIIGgGpaGl~AAi~aar--------------------~G~-~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSAR--------------------KGI-RTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--------------------TTC-CEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHH--------------------cCC-eEEEEEEe
Confidence            48999999999999999996                    676 59999875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0024  Score=52.16  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||+|..|+-+|..|++                    .|. +|+|+++++.+
T Consensus         7 DviViGaG~~Gl~~A~~La~--------------------~G~-~V~vlE~~~~~   40 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSV--------------------DGK-KVLHIDKQDHY   40 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEcCCCCC
Confidence            49999999999999999997                    675 69999998644

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.92  E-value=0.0046  Score=45.27  Aligned_cols=34  Identities=21%  Similarity=0.176  Sum_probs=31.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|+|||+|..|..-|..|.+.+  .+|+++++.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~g--a~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecc
Confidence            4689999999999999999999997  999999865

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.83  E-value=0.0052  Score=47.31  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +++||+|||+|..|.++|..|...+--.+++++|.+.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4689999999999999999999986445899999753

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.81  E-value=0.0038  Score=52.41  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      +|+|||||.+|+-+|..|++                    .|..+|+|++|++.+
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~--------------------~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQ--------------------AGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHh--------------------CCCCeEEEEeCCCCC
Confidence            79999999999999999996                    786679999998754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.67  E-value=0.011  Score=51.14  Aligned_cols=30  Identities=10%  Similarity=0.102  Sum_probs=24.2

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                      +.|+++++++.++++.. . ++++|.+|.+.+
T Consensus       160 ~~g~~i~~~~~v~~l~~-~-~~g~V~Gv~~~~  189 (317)
T d1qo8a2         160 EQGIDTRLNSRVVKLVV-N-DDHSVVGAVVHG  189 (317)
T ss_dssp             HTTCCEECSEEEEEEEE-C-TTSBEEEEEEEE
T ss_pred             hccceeeeccchhheee-c-ccccceeeEeec
Confidence            56899999999999853 2 478999998765

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=95.65  E-value=0.012  Score=48.72  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=26.6

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .|+|||||..|+|+|.+.++                    .|.+ +-||..+
T Consensus         4 DVIVIGgG~AG~eAA~~aAR--------------------~G~k-tllit~~   34 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQ--------------------KGVR-VGLLTQS   34 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--------------------TTCC-EEEEESC
T ss_pred             cEEEECcCHHHHHHHHHHHH--------------------CCCc-EEEEEec
Confidence            49999999999999999997                    7875 7788654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0097  Score=45.80  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=50.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV   99 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v   99 (334)
                      -+|+|+|.|..|..++..|.+.+  .++++++.++.                 .......+ +...++.++.+......+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~--~~v~vId~d~~-----------------~~~~~~~~-~~~~~~~vi~Gd~~d~~~   63 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRG--QNVTVISNLPE-----------------DDIKQLEQ-RLGDNADVIPGDSNDSSV   63 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCH-----------------HHHHHHHH-HHCTTCEEEESCTTSHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC--CCEEEEeccch-----------------hHHHHHHH-hhcCCcEEEEccCcchHH
Confidence            37999999999999999999987  89999997641                 11122222 234578776654322111


Q ss_pred             ecccce-eccCeEEEeccC
Q 019876          100 SLSELR-QLYHVVVLAYGA  117 (334)
Q Consensus       100 ~~~~~~-~~yd~lIlATGs  117 (334)
                       +.... ..+|.+|++|+.
T Consensus        64 -L~~a~i~~a~~vi~~~~~   81 (153)
T d1id1a_          64 -LKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             -HHHHTTTTCSEEEECSSC
T ss_pred             -HHHhccccCCEEEEcccc
Confidence             12212 368999998875

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.60  E-value=0.009  Score=45.92  Aligned_cols=40  Identities=23%  Similarity=0.299  Sum_probs=34.8

Q ss_pred             ccCCCCCCeEEEEC-CchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           13 TALSSNPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        13 ~~~~~~~~~vvIIG-aG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .......++|.||| .|..|...|..|++.|  ++|+++|+..
T Consensus         3 ~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G--~~V~~~d~~~   43 (152)
T d2pv7a2           3 KTINSDIHKIVIVGGYGKLGGLFARYLRASG--YPISILDRED   43 (152)
T ss_dssp             CCSCTTCCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTC
T ss_pred             cccCCCCCeEEEEcCCCHHHHHHHHHHHHcC--CCcEeccccc
Confidence            34455678999999 7999999999999997  9999999874

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.57  E-value=0.0048  Score=50.73  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=29.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .+|+|||+|..|+.+|..|++.                  ..+. +|+|+++.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~------------------~~~~-~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKH------------------HSRA-HVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------------------CSSC-EEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhc------------------CCCC-eEEEEeCCCCC
Confidence            3899999999999999999750                  1243 69999998654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.54  E-value=0.0042  Score=53.27  Aligned_cols=35  Identities=11%  Similarity=0.158  Sum_probs=27.7

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEEEeeeecC
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG  317 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~~~~~~~  317 (334)
                      +.|++|++++.|++|.  . .++++++|++.++++.++
T Consensus       160 ~~gv~i~~~~~V~~i~--~-~~~~v~~V~T~~g~i~a~  194 (305)
T d1pj5a2         160 SAGVTYRGSTTVTGIE--Q-SGGRVTGVQTADGVIPAD  194 (305)
T ss_dssp             HTTCEEECSCCEEEEE--E-ETTEEEEEEETTEEEECS
T ss_pred             cccccccCCceEEEEE--E-eCCEEEEEeccceeEECC
Confidence            4689999999999998  4 368899998876665543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.007  Score=42.59  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++|+|+|+|.|-+|+-+|+.|.+                    .|. +|++...+.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~--------------------~g~-~v~~~D~~~   38 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLA--------------------RGV-TPRVMDTRM   38 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--------------------TTC-CCEEEESSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHH--------------------CCC-EEEEeeCCc
Confidence            78999999999999999999996                    676 599988764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0052  Score=53.02  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=29.2

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||||.+|+-+|..|++                    .|. +|+|+++++.+
T Consensus         3 dv~IIGaG~sGl~~A~~L~~--------------------~g~-~V~iiEk~~~i   36 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKK--------------------LNK-KVLVIEKRNHI   36 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGG--------------------GTC-CEEEECSSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHh--------------------CCC-cEEEEECCCCc
Confidence            58999999999999999996                    564 69999988654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.36  E-value=0.0049  Score=50.12  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=29.6

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||+|+.|+.+|..+++                    .|. +|+||++++.+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~--------------------~G~-kV~vie~~~~~   38 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQ--------------------LGF-KTTCIEKRGAL   38 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEEecCCC
Confidence            59999999999999999996                    676 59999987654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.34  E-value=0.0091  Score=46.51  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=29.8

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |||.|||.|..|.+.|..|.+.+  ++|+++|++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~   32 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQ   32 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC--CEEEEEECC
Confidence            68999999999999999999987  999999876

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.33  E-value=0.013  Score=45.36  Aligned_cols=39  Identities=23%  Similarity=0.186  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +..+++||+|||+|..|.++|..|...+ -.+++++|.++
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~-~~el~L~D~~~   41 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRE-LADVVLYDVVK   41 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHT-CCEEEEECSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCC-CceEEEEEecc
Confidence            3456789999999999999998887765 24899998764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0095  Score=47.95  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      -++|+|||+|..|...|..+++.|  ++|+++|.++.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCC--CcEEEEECChH
Confidence            479999999999999999999997  99999998753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.10  E-value=0.011  Score=47.06  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |+|.|||+|.-|.+.|..|.+.+  .+|+++.+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g--~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC--CEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CEEEEEEec
Confidence            79999999999999999999987  899999764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0074  Score=52.07  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=29.2

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||+|.+|+-+|..|++                    .|. +|+|+++++.+
T Consensus         1 DViVIGaG~aGL~aA~~L~~--------------------~G~-~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD--------------------SGL-NVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH--------------------TTC-CEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCCC
Confidence            38999999999999999997                    676 69999987643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.06  E-value=0.016  Score=44.45  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ....||.|||+|..|.++|..|...+--.++.|+|..+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            35679999999999999999999886445899999753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.05  E-value=0.015  Score=44.29  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |||+|||+|..|.++|..|...+.-.+++++|.++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            68999999999999999998876445899999764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.00  E-value=0.012  Score=46.96  Aligned_cols=35  Identities=17%  Similarity=0.115  Sum_probs=31.5

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +-++|+|||+|..|...|..++..|  ++|+++|.++
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~   37 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKG--TPILMKDINE   37 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTT--CCEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence            3578999999999999999999987  9999999874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.00  E-value=0.0099  Score=46.41  Aligned_cols=34  Identities=32%  Similarity=0.389  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|+|+|||+|.+|.-+|..|++                    .|. +|+++.|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~--------------------~g~-~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTD--------------------SGI-KVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHT--------------------TTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--------------------CCC-EEEEEECCh
Confidence            5899999999999999999997                    565 588888873

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.93  E-value=0.023  Score=44.16  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=31.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .++.||.|||+|..|.++|..|...+--.+++|+|.+
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4557899999999999999999988744589999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.011  Score=47.83  Aligned_cols=32  Identities=13%  Similarity=0.136  Sum_probs=27.9

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|+|||+|+.|+.+|..+++                    .|. +|.||++..
T Consensus         4 DvvVIG~G~aG~~aA~~a~~--------------------~G~-kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAM--------------------YGQ-KCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--------------------TTC-CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEEeccC
Confidence            48999999999999999996                    675 599999853

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.78  E-value=0.019  Score=44.74  Aligned_cols=36  Identities=22%  Similarity=0.140  Sum_probs=31.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +++|.|||.|..|.+.|..|++.++..+|+.+|+++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            357999999999999999999998667899998863

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.71  E-value=0.018  Score=44.06  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=29.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +||.|||+|..|.++|..|...+--.+++++|.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            6999999999999999999887633589999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.68  E-value=0.0096  Score=47.80  Aligned_cols=35  Identities=23%  Similarity=0.083  Sum_probs=30.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++||+|||+|.-|.+.|..|.+.+  .+|+++.+++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g--~~V~l~~r~~   40 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKC--REVCVWHMNE   40 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTE--EEEEEECSCH
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcC--CeEEEEEecH
Confidence            3468999999999999999999987  8999998763

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.65  E-value=0.012  Score=49.34  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=28.4

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|+|||||.+|+-+|..|++                    .|. +|+|+++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~--------------------~G~-~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAK--------------------ENK-NTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEeCCC
Confidence            59999999999999999997                    675 699999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.014  Score=47.50  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||+|..|+.+|..+++                    .|. +|.|+++++.+
T Consensus         7 DviVIG~GpAGl~aA~~aa~--------------------~G~-kV~lie~~~~~   40 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQ--------------------LGF-NTACVEKRGKL   40 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEEecCCc
Confidence            58999999999999999996                    676 59999987653

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.60  E-value=0.013  Score=47.30  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=28.5

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ..|+|||+|+.|+.+|..+++                    .|. +|+||++..
T Consensus         4 ~DviVIG~GpaGl~aA~~aar--------------------~G~-kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQ--------------------LGQ-KVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEEecCC
Confidence            369999999999999999996                    675 599998864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.55  E-value=0.0098  Score=48.43  Aligned_cols=32  Identities=25%  Similarity=0.177  Sum_probs=28.3

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      ..++|||+|..|+++|..+++                    .|. +|+||++.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~--------------------~G~-~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQ--------------------LGI-PTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecC
Confidence            479999999999999999996                    676 59999875

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=94.55  E-value=0.016  Score=48.96  Aligned_cols=37  Identities=16%  Similarity=0.343  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      ...|+|||+|.+|+.+|..|++                   +.|. +|+++++++.+
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~-------------------~~G~-~V~vlE~~~~~   69 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISK-------------------NPNV-QVAIIEQSVSP   69 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-------------------STTS-CEEEEESSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-------------------ccCC-eEEEEecCCCC
Confidence            4579999999999999999975                   2466 59999998643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.54  E-value=0.014  Score=47.77  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||+|+.|+.+|..+++                    .|. +|+||++...+
T Consensus         8 DviIIG~GPaGlsaA~~aa~--------------------~G~-~V~viE~~~~~   41 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAAD--------------------EGL-KVAIVERYKTL   41 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------CCC-eEEEEeccCCC
Confidence            58999999999999999996                    675 69999987643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.49  E-value=0.0099  Score=50.39  Aligned_cols=34  Identities=24%  Similarity=0.483  Sum_probs=30.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .+|+|||||.+|+-+|..|++                    .|. +|+|+++++.
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~--------------------~G~-~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHK--------------------AGI-DNVILERQTP   36 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEECSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence            379999999999999999997                    687 5999999864

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.032  Score=41.45  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=32.4

Q ss_pred             CCCCeEEEECCch-----------HHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGP-----------AGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~-----------aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ...++|+|||+||           ++..|+..|++.|  ++++++..+|.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g--~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEG--YRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT--CEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC--CeEEEecCchH
Confidence            4568999999996           6889999999997  99999998875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.039  Score=40.04  Aligned_cols=37  Identities=27%  Similarity=0.330  Sum_probs=33.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ....+|.|||||--|...|..+.+.|  +++.++|+.+.
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG--~~v~v~d~~~~   45 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLG--VEVIAVDRYAD   45 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTT--CEEEEEESSTT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCC--CEEEEEcCCCC
Confidence            34579999999999999999999997  99999998765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.40  E-value=0.027  Score=42.89  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .||+|||+|..|.++|..+...+--.++.|+|..+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            58999999999999999998886335899999764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.34  E-value=0.029  Score=42.70  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +.||+|||+|..|.++|..+...+--.++.|+|.+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            35899999999999999999888744589999865

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.34  E-value=0.022  Score=44.68  Aligned_cols=33  Identities=21%  Similarity=0.255  Sum_probs=30.2

Q ss_pred             CeEEEE-CCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVV-GSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvII-GaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |||+|| |+|..|.+.|..|.+.|  ++|++.+|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G--~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCC--CEEEEEECCH
Confidence            689999 67999999999999997  9999999874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.31  E-value=0.038  Score=42.89  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=31.4

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +++||.|||+|..|.++|..|...+---++.|+|..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            467999999999999999999998744589999975

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.29  E-value=0.026  Score=42.93  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |||.|||+|..|.++|..|...+--.++.|+|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            69999999999999999998776335799998653

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.28  E-value=0.022  Score=45.64  Aligned_cols=83  Identities=18%  Similarity=0.291  Sum_probs=48.9

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEceEE
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV   99 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~v   99 (334)
                      |+|+|||.|+.|+.+|..++ .+  ++|+.+|-++..-..+..+..|.+   +..   +.++++.....+....      
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g--~~V~g~Din~~~v~~l~~g~~p~~---e~~---l~~~~~~~~~~~~~~~------   65 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQ--NEVTIVDILPSKVDKINNGLSPIQ---DEY---IEYYLKSKQLSIKATL------   65 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TT--SEEEEECSCHHHHHHHHTTCCSSC---CHH---HHHHHHHSCCCEEEES------
T ss_pred             CEEEEECCChhHHHHHHHHH-CC--CcEEEEECCHHHHHHHhhcccccc---hhh---HHHHhhhhhhhhhccc------
Confidence            78999999999999998775 45  899999987543233333443432   112   2222333222222111      


Q ss_pred             ecccceeccCeEEEeccC
Q 019876          100 SLSELRQLYHVVVLAYGA  117 (334)
Q Consensus       100 ~~~~~~~~yd~lIlATGs  117 (334)
                      ........+|.+++||++
T Consensus        66 ~~~~~~~~~~ii~v~vpt   83 (196)
T d1dlja2          66 DSKAAYKEAELVIIATPT   83 (196)
T ss_dssp             CHHHHHHHCSEEEECCCC
T ss_pred             hhhhhhhccccccccCCc
Confidence            111112368999999987

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.26  E-value=0.067  Score=42.01  Aligned_cols=36  Identities=25%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~   54 (334)
                      ....+|+|+|+|+.|+.++..++..|  . +|++++.++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~   63 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSP   63 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCH
T ss_pred             CCCCEEEEECCCccchhheecccccc--ccccccccccc
Confidence            35679999999999999999998887  5 789998763

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.25  E-value=0.027  Score=42.69  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=29.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |||.|||+|..|.++|..+...+--.++.++|.+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            6999999999999999998887644589999865

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.22  E-value=0.03  Score=42.57  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=29.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++||.|||+|..|.++|..|...+ -.++.++|..+
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~-l~dl~l~D~~~   35 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIVE   35 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-cceEEEEeecc
Confidence            369999999999999999988775 35899998754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.21  E-value=0.02  Score=41.16  Aligned_cols=36  Identities=14%  Similarity=-0.072  Sum_probs=29.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      -..++|+|||+|.+|+-.|..|.+..  .+++++.+.+
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~a--k~v~~~~~r~   65 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVA--KHPIYQSLLG   65 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECTT
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhc--CEEEEEEecC
Confidence            35799999999999999999999876  5666665543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.10  E-value=0.018  Score=48.41  Aligned_cols=33  Identities=21%  Similarity=0.479  Sum_probs=28.7

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .|+|||||.+|+-+|..|++                    .|. +|+|+++++.
T Consensus         5 DvvIIGaGi~Gls~A~~La~--------------------~G~-~V~viE~~~~   37 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAK--------------------QGV-KTLLVDAFDP   37 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCC
Confidence            49999999999999999997                    676 5999998743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.09  E-value=0.075  Score=41.69  Aligned_cols=25  Identities=28%  Similarity=0.170  Sum_probs=21.4

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +.++++|+|+|+|.+|+-++..+..
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~   50 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARS   50 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccchhheecccc
Confidence            4578999999999999988877775

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.08  E-value=0.034  Score=47.98  Aligned_cols=39  Identities=26%  Similarity=0.429  Sum_probs=29.3

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||||.+|+-+|..|++.               ..++.|. +|+|++|++.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~---------------~~~~~G~-~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEY---------------VRQKPDL-KVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH---------------HHHSTTC-CEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhc---------------ccccCCC-cEEEEcCCCCC
Confidence            699999999999999999630               0012576 49999998644

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.92  E-value=0.036  Score=43.13  Aligned_cols=37  Identities=22%  Similarity=0.202  Sum_probs=31.9

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..+..+|+|+|+|+.|+.++..++..|  .+|++++.++
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~   61 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSS   61 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSS
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccch
Confidence            345689999999999999999888887  9999998764

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.059  Score=39.47  Aligned_cols=36  Identities=14%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             CCCeEEEECCch-----------HHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGSGP-----------AGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGaG~-----------aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ..++|+|||+||           ++..|+..|++.|  ++++++..+|.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g--~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG--YETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT--CEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC--CeEEEEecChh
Confidence            467999999995           6889999999997  99999998875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.039  Score=43.09  Aligned_cols=35  Identities=26%  Similarity=0.296  Sum_probs=31.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .+.++|+|+|+|-++-+++..|.+.+  .+|+|+.|.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g--~~i~I~nRt   50 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRT   50 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccc--eEEEeccch
Confidence            35689999999999999999999987  799999876

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.024  Score=45.74  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=27.2

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .|+|||+|+.|+++|..+++                    .|. +|.||++.
T Consensus         5 DviIIG~GpaG~~aA~~aar--------------------~G~-kV~vIEk~   35 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAE--------------------LGA-RAAVVESH   35 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEEecc
Confidence            38999999999999999996                    675 59999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.53  E-value=0.048  Score=42.29  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ....+|+|+|+|+.|+.++..++..|  .+|+++++++
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~   60 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSP   60 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhc--ccccccchHH
Confidence            45679999999999999999888886  8999998763

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.47  E-value=0.035  Score=43.40  Aligned_cols=22  Identities=32%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHcc
Q 019876          159 TDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .|+++|||+|..|.-+|..|++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~   22 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLAL   22 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHH
Confidence            3799999999999999999997

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.057  Score=41.99  Aligned_cols=35  Identities=31%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~   53 (334)
                      .+..+|+|+|+|+.|+.++..++..+  . +|+++|++
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~   60 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLS   60 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCC
Confidence            45578999999999999999999887  5 79998875

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.39  E-value=0.033  Score=45.46  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=28.4

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .|+|||+|+.|+.+|..+++                    .|. +|.|+++...
T Consensus         5 DviVIG~GpaGl~aA~~aa~--------------------~G~-kV~viE~~~~   37 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAK--------------------FDK-KVMVLDFVTP   37 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGG--------------------GCC-CEEEECCCCC
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccCC
Confidence            58999999999999999997                    676 5999997643

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.34  E-value=0.043  Score=45.76  Aligned_cols=35  Identities=17%  Similarity=0.112  Sum_probs=30.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      -.++|||+|..|+++|..+++                    .|. +|+++++.+.+
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~--------------------~G~-kv~vve~~~~l   77 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRA--------------------MGG-RQLIVDRWPFL   77 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccCcc
Confidence            369999999999999999996                    676 59999987654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.34  E-value=0.046  Score=42.24  Aligned_cols=36  Identities=19%  Similarity=0.150  Sum_probs=31.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..+..+|+|+|+|+.|+.++..++..|  .+|+++++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~   60 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDID   60 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcC--Cccceecch
Confidence            345679999999999999999888886  899999875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.33  E-value=0.031  Score=47.97  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .-.|+|||+|.+|+-+|..|.+                    .|. +|+|+++.+.+
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~--------------------~G~-~v~i~Ek~~~i   42 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRE--------------------LGR-SVHVIETAGDV   42 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHh--------------------CCC-CEEEEEcCCCc
Confidence            3579999999999999999986                    676 59999987643

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.10  E-value=0.028  Score=45.30  Aligned_cols=32  Identities=16%  Similarity=0.209  Sum_probs=27.6

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|+|||+|+.|+.+|..+++                    .|. +|.|+++..
T Consensus         5 DviIIGgGpAGl~aA~~aar--------------------~G~-~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQ--------------------LGL-KTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------CCC-eEEEEeccc
Confidence            48999999999999999997                    675 599998753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.96  E-value=0.04  Score=42.99  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++++|+|+|+|-+|--++..|.+                    .|+++|+|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~--------------------~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKN--------------------SGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHH--------------------TTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--------------------CCCCEEEEecccH
Confidence            57899999999999999999986                    7888899998863

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.90  E-value=0.052  Score=41.85  Aligned_cols=33  Identities=30%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |||.|||-|..|...|..|.+.+  ++|+++++.+
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G--~~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAG--YSLVVSDRNP   33 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCC--CeEEEEeCCc
Confidence            68999999999999999999997  9999998763

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.86  E-value=0.044  Score=42.44  Aligned_cols=35  Identities=26%  Similarity=0.510  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .+++|+|||+|.+|..++..|..                    .|.++++++.|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~--------------------~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVD--------------------RGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHH--------------------HCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHh--------------------cCCcEEEEEcCc
Confidence            67999999999999999999986                    688889999887

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.85  E-value=0.082  Score=40.41  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=28.9

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +.||.|||+|..|.++|..|...+ =.++.|+|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~-l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-CCeEEEEeccC
Confidence            469999999999999998777665 35899999754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.07  Score=35.94  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=31.4

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      ++|.|||+|--|...+....+.|  +++.++++.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG--~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLG--IAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGT--EEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcC--CEEEEEcCCCC
Confidence            68999999999999999999998  99999998755

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.075  Score=41.12  Aligned_cols=36  Identities=22%  Similarity=0.170  Sum_probs=31.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .....+|+|+|+|+.|+.++..++..|  .++++++..
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~   63 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTS   63 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccc
Confidence            345789999999999999999888886  899888865

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=0.081  Score=42.22  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=31.4

Q ss_pred             CCCeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .++||+|+|| |..|-.++..|.+++  ++|+++.|++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g--~~V~~~~R~~   37 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDS   37 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEEcCh
Confidence            5689999995 999999999999997  9999999864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.34  E-value=0.078  Score=40.34  Aligned_cols=33  Identities=21%  Similarity=0.092  Sum_probs=29.9

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |||.|||.|..|...|..|++.+  ++++++++.+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g--~~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRG--VEVVTSLEGR   33 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT--CEEEECCTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCC--CeEEEEcCch
Confidence            68999999999999999999997  8999988653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.24  E-value=0.073  Score=41.36  Aligned_cols=35  Identities=20%  Similarity=0.133  Sum_probs=30.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +.++|+|+|+|-++-+++..|.+.+ -.+|+|+.|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g-~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSG-FEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTT-CCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CCEEEEeccc
Confidence            4579999999999999999999987 2379999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.16  E-value=0.2  Score=38.90  Aligned_cols=80  Identities=13%  Similarity=0.047  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHccCCc-ccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceE
Q 019876          156 LKSTDTAVILGQGNVALDVARILLRPTE-ELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY  234 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~  234 (334)
                      +.++++|+|+|+|.+|+-++..+..... ++-.++..+.=++..++.|+.+ ++-.+.+.     ..+.+++.....|++
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~-~i~~~~~~-----~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD-ILNYKNGH-----IEDQVMKLTNGKGVD   98 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE-EECGGGSC-----HHHHHHHHTTTSCEE
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc-cccccchh-----HHHHHHHHhhccCcc
Confidence            4588999999999999998888876442 4555666666566666666642 22222221     135666666678899


Q ss_pred             EEEccCc
Q 019876          235 VHIREDD  241 (334)
Q Consensus       235 ~~~~~~~  241 (334)
                      +.++..-
T Consensus        99 ~vid~~g  105 (174)
T d1jqba2          99 RVIMAGG  105 (174)
T ss_dssp             EEEECSS
T ss_pred             eEEEccC
Confidence            9887654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=92.08  E-value=0.12  Score=40.58  Aligned_cols=36  Identities=14%  Similarity=0.134  Sum_probs=26.4

Q ss_pred             CCCeEEEECC-chHHHHHHHHHhhcC-----CCCeEEEEcCC
Q 019876           18 NPLRVCVVGS-GPAGFYTAEKTLKAH-----QEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGa-G~aGl~aA~~l~~~~-----~~~~v~vie~~   53 (334)
                      +..+|.|+|| |..|.+++..|++..     ....+.++|..
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            4568999996 999999999988742     12356666643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.93  E-value=0.11  Score=39.52  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             CeEEEEC-CchHHHHHHHHHhhc-CCCCeEEEEcCC
Q 019876           20 LRVCVVG-SGPAGFYTAEKTLKA-HQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIG-aG~aGl~aA~~l~~~-~~~~~v~vie~~   53 (334)
                      |||.||| +|..|.++|..|... +-..++.++|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            6999999 599999999887644 334689999864

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.92  E-value=0.044  Score=46.97  Aligned_cols=65  Identities=15%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCC-----------HHHHHH
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT-----------AKELRE  226 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~-----------~~~~~~  226 (334)
                      ..+.|+|||+|..|+.+|..|++.                  +.|. +|+|+++++.+--...           ......
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~------------------~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  109 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKN------------------RPDL-KVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHL  109 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHH------------------CTTS-CEEEECSSSSCCTTTTCCGGGCCCEEEETTTHH
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHh------------------CCCC-eEEEEEcCCCCcceeEecCEeCCHHHHHhHHHH
Confidence            346799999999999999999840                  1355 5999999865422111           134455


Q ss_pred             HHcCCceEEEEccCc
Q 019876          227 ILGIKNLYVHIREDD  241 (334)
Q Consensus       227 ~l~~~gv~~~~~~~~  241 (334)
                      ++...|+.+......
T Consensus       110 ~~~~~gi~~~~~~~~  124 (311)
T d2gjca1         110 FLQELEIPYEDEGDY  124 (311)
T ss_dssp             HHHHTTCCCEECSSE
T ss_pred             HHHhCCcEEEEeccc
Confidence            566667766655443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.89  E-value=0.093  Score=41.28  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      ++++|+|+|+|-+|--++..|..                    .++++++++.|...
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~--------------------~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAI--------------------EGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhh--------------------cCCceEeeeccchH
Confidence            67999999999999988888886                    78889999999753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.096  Score=40.57  Aligned_cols=25  Identities=8%  Similarity=0.190  Sum_probs=21.5

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +.++++|+|+|+|.+|+=++..+..
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~   48 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKA   48 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHH
Confidence            3478999999999999988887775

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.075  Score=40.67  Aligned_cols=33  Identities=18%  Similarity=0.051  Sum_probs=28.8

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      +|+|||+|.+|.-+|..|++                    .|. +|+++.|...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~--------------------~G~-~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCK--------------------QGH-EVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHH--------------------CCC-ceEEEEcCHH
Confidence            79999999999999999996                    565 6999998863

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.66  E-value=0.098  Score=39.65  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=27.9

Q ss_pred             eEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           21 RVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        21 ~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ||+|||| |..|.++|..|...+---+++++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            8999996 99999999999887633579999864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.66  E-value=0.095  Score=40.34  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=30.5

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +++|.|||-|..|...|..|.+.+  ++|.++|++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g--~~v~~~d~~   33 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLV   33 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCC--CeEEEEECc
Confidence            468999999999999999999997  999999976

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=91.57  E-value=0.073  Score=45.70  Aligned_cols=29  Identities=7%  Similarity=0.145  Sum_probs=23.6

Q ss_pred             ceEEEEEeccccceeeccccCCCCeeEEEEEE
Q 019876          280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEK  311 (334)
Q Consensus       280 ~~gv~~~~~~~~~~i~~~~~~~~~v~~v~~~~  311 (334)
                      ..||++++++.+++++  . +++++.++.+.+
T Consensus       170 ~~gv~i~~~~~~~~li--~-~~~~v~g~~~~~  198 (336)
T d2bs2a2         170 KLGVSIQDRKEAIALI--H-QDGKCYGAVVRD  198 (336)
T ss_dssp             HHTCEEECSEEEEEEE--E-ETTEEEEEEEEE
T ss_pred             hccccccceeeeeecc--c-ccccccceeEEe
Confidence            5689999999999987  4 378888888765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.45  E-value=0.12  Score=40.37  Aligned_cols=37  Identities=19%  Similarity=0.190  Sum_probs=30.8

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP   54 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~~   54 (334)
                      ..+..+|+|+|+|+.|+.++..++..+  . +|++++.++
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~G--a~~Vi~~d~~~   62 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRG--AGRIIGVGSRP   62 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTT--CSCEEEECCCH
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhccc--ccccccccchh
Confidence            345679999999999999999999886  5 688888753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.28  E-value=0.097  Score=40.84  Aligned_cols=33  Identities=27%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      |+|-|||-|..|...|..|.+.+  ++|.++++.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G--~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKG--FKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCC--CeEEEEECCH
Confidence            68999999999999999999997  9999999763

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.086  Score=42.00  Aligned_cols=35  Identities=17%  Similarity=0.315  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      -|+|+|||+|..|..+|..++.                    .|. +|+++.+...
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~--------------------~G~-~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAA--------------------TGH-TVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEEECChH
Confidence            4899999999999999999986                    565 6999988753

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.15  Score=40.05  Aligned_cols=36  Identities=11%  Similarity=0.175  Sum_probs=31.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|+|||+|-+|-+++..|.+.+ ..+++|+.+.+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcC-CceEeeeccch
Confidence            4689999999999999999999987 35899999864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.21  E-value=0.13  Score=39.60  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~   53 (334)
                      ..++|+|||+|..|-.++.+|...+  . +++|+.|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g--~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRG--VRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHC--CSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcC--CcEEEEEcCc
Confidence            5689999999999999999999987  5 68898875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.17  E-value=0.17  Score=39.48  Aligned_cols=36  Identities=22%  Similarity=0.118  Sum_probs=30.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCC-eEEEEcCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL   53 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~-~v~vie~~   53 (334)
                      .....+|+|+|+|+.|+.++..++..+  . +|++.|.+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~G--a~~Vi~~d~~   62 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDIN   62 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhC--Cceeeeeccc
Confidence            445679999999999999999999987  5 57777765

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.17  E-value=0.082  Score=46.03  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=28.1

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|||||+|..|+-+|..|++                    .|. +|.|+++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLae--------------------aG~-~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGE--------------------AGV-QTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHH--------------------CcC-eEEEEecCC
Confidence            48999999999999999996                    675 699999863

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.16  E-value=0.27  Score=36.11  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             eEEEEcCCHHHHHHHHHHcc
Q 019876          161 TAVILGQGNVALDVARILLR  180 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +|+|+|+|.+|..+|..|.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~   21 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSE   21 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHH
Confidence            69999999999999999986

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.13  E-value=0.13  Score=39.44  Aligned_cols=36  Identities=17%  Similarity=0.101  Sum_probs=30.4

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..+..+|+|+|+|+.|+.++..++..+  .+|++++.+
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~   60 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIG   60 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSC
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCC
Confidence            345679999999999999998888876  898888764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.11  E-value=0.12  Score=41.21  Aligned_cols=37  Identities=27%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .....+|+|+|+|+.|+.++..++..+ ..+|++++..
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~   59 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLN   59 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeeccc
Confidence            345679999999999999999888776 3478888764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.07  E-value=0.17  Score=39.44  Aligned_cols=38  Identities=18%  Similarity=0.081  Sum_probs=32.0

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ......|+|+|+|+.|+.++..++..+ ..+|+++|.++
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~   64 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNK   64 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcH
Confidence            345678999999999999999999886 35899998764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.03  E-value=0.082  Score=43.17  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=26.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .+|+|||+|+.|+.+|..+++..                  ....+|+++++..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~------------------~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSH------------------PETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHC------------------TTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcC------------------CCCCEEEEEecCC
Confidence            47999999999999998776410                  1224699999753

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.96  E-value=0.087  Score=43.73  Aligned_cols=31  Identities=29%  Similarity=0.443  Sum_probs=27.4

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .++|||+|..|+.+|..+++                    .|. +|.|+++.
T Consensus         3 DviVIG~G~aG~~aA~~aa~--------------------~G~-~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAAR--------------------HNA-KVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecC
Confidence            38999999999999999996                    676 59999975

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=90.94  E-value=0.13  Score=38.97  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |+|.+||+|.-|-+.|..|.+.+ ..+|.+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~   33 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRG   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCC
Confidence            68999999999999999998876 4799999876

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.84  E-value=0.1  Score=40.70  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ...++|+|+|+|-++-+++..|.+.+  .+|+|+.|.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~--~~i~I~nR~   50 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRT   50 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESS
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccC--ceeeeccch
Confidence            35689999999999999999998764  799999886

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.74  E-value=0.09  Score=42.47  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=27.6

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      .|+|||+|+.|+.+|..+++                    .+.+.|.|++..
T Consensus         5 DviIIG~GpaGl~aA~~aa~--------------------~g~k~V~iie~~   36 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAAT--------------------LYKKRVAVIDVQ   36 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--------------------TSCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------cCCCEEEEEEee
Confidence            48999999999999999996                    676778898864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.69  E-value=0.2  Score=39.02  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=22.2

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +.++++|+|+|+|.+|+=.+..+..
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~   50 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKI   50 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHH
Confidence            5689999999999999998888876

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=90.64  E-value=0.1  Score=45.51  Aligned_cols=32  Identities=22%  Similarity=0.234  Sum_probs=27.8

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|||||+|..|+-+|..|++                    .|. +|.|+++..
T Consensus         9 dvIVVGsG~aG~v~A~rLae--------------------aG~-~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQ--------------------AGI-PTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------CCC-eEEEEeCCC
Confidence            58999999999999999996                    575 699999863

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.55  E-value=0.087  Score=43.55  Aligned_cols=35  Identities=14%  Similarity=0.305  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      ..++|+|||.|-+|..+|..|++                    .|+++++++...
T Consensus        29 ~~~~VliiG~GglGs~va~~La~--------------------~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLAS--------------------AGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHH--------------------HTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEECCc
Confidence            45899999999999999999997                    799999999754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.12  Score=40.04  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++|+|+|+|+|-+|--++..|.+                    .|+ +|+|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~--------------------~g~-~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLS--------------------LDC-AVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcc--------------------cce-EEEeccchH
Confidence            68999999999999999999886                    687 499998863

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.50  E-value=0.23  Score=39.40  Aligned_cols=79  Identities=13%  Similarity=0.160  Sum_probs=43.0

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHccCC-cccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceE
Q 019876          156 LKSTDTAVILGQGNVALDVARILLRPT-EELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY  234 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~  234 (334)
                      +..+++|+|+|+|.+|+-++..+.... .++-.++..+.-++..++.|+. .++..+...+     .+.+.++....|++
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~-~~~~~~~~~~-----~~~i~~~t~g~g~D   96 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-IADLSLDTPL-----HEQIAALLGEPEVD   96 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-EEETTSSSCH-----HHHHHHHHSSSCEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc-EEEeCCCcCH-----HHHHHHHhCCCCcE
Confidence            568999999999999988777665422 2333344444444444444542 2222111111     13444455555666


Q ss_pred             EEEccC
Q 019876          235 VHIRED  240 (334)
Q Consensus       235 ~~~~~~  240 (334)
                      +.++..
T Consensus        97 ~vid~v  102 (195)
T d1kola2          97 CAVDAV  102 (195)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            666543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.49  E-value=0.2  Score=38.74  Aligned_cols=38  Identities=18%  Similarity=0.198  Sum_probs=31.1

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..+..+|+|+|+|+.|+.++..++..+ ..+|+.++..+
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~   63 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNP   63 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchH
Confidence            445678999999999999999999887 45788887653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.47  E-value=0.14  Score=39.65  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      ++.+|+|||+|.+|+..++...+                    +|+ +|+++..+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~--------------------lGA-~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVG--------------------LGA-QVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhh--------------------CCC-EEEEEeCc
Confidence            46799999999999999999886                    676 48888766

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.42  E-value=0.17  Score=37.29  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=20.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHccC
Q 019876          160 DTAVILGQGNVALDVARILLRP  181 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~  181 (334)
                      |+++|+|.|.+|..+|..|.+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~   22 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM   22 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC
Confidence            6799999999999999999973

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.41  E-value=0.14  Score=42.77  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             CCCeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +++||+|+|| |..|...+.+|.+.|  ++|+++.+++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCCc
Confidence            4678999996 999999999999987  99999988643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.41  E-value=0.14  Score=45.28  Aligned_cols=40  Identities=28%  Similarity=0.420  Sum_probs=30.0

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCcc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV  215 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~  215 (334)
                      .|+|||||..|+-+|..|++              +....+.|. +|.|++|...+
T Consensus        34 DViIVGgGPAGlsaA~~LA~--------------l~~~~~~Gl-~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQ--------------LAAQHEKDL-RVCLVEKAAHI   73 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--------------HHHHTTCCC-CEEEECSSSST
T ss_pred             CEEEECCCHHHHHHHHHHHh--------------hhhhhcCCC-EEEEEcCCCCC
Confidence            79999999999999999884              111112466 59999998654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.23  E-value=0.15  Score=42.31  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=32.0

Q ss_pred             CCCeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCCC
Q 019876           18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT   55 (334)
Q Consensus        18 ~~~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~~   55 (334)
                      +++||+|+|| |..|-..+..|.+.|  ++|+++.+.+.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G--~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLG--HPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEECCCc
Confidence            4689999997 999999999999987  99999998753

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.21  E-value=0.15  Score=39.78  Aligned_cols=33  Identities=12%  Similarity=0.034  Sum_probs=30.6

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      .+|-|||-|..|...|..|.+.+  ++|+++++.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G--~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCC--CeEEEEcCCH
Confidence            58999999999999999999997  9999999874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.15  E-value=0.11  Score=41.20  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .-++|+|||+|..|..+|..++.                    .|. +|+++.+...
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~--------------------~G~-~V~l~D~~~~   38 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSAS--------------------KGT-PILMKDINEH   38 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHH--------------------TTC-CEEEECSSHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--------------------CCC-eEEEEECCHH
Confidence            35899999999999999988886                    565 5999888643

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=90.10  E-value=0.17  Score=38.62  Aligned_cols=24  Identities=8%  Similarity=0.221  Sum_probs=20.6

Q ss_pred             CCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          157 KSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       157 ~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .+.++|+|||+|.+|.-+|..|+.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~   28 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCAL   28 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh
Confidence            467899999999999999877764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.03  E-value=0.19  Score=38.99  Aligned_cols=37  Identities=11%  Similarity=0.124  Sum_probs=28.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..+..+|+|+|+|+.|+.++..++..+ ...|++.+.+
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~   62 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIV   62 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccH
Confidence            445779999999999999999998887 2345556654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=90.02  E-value=0.34  Score=39.85  Aligned_cols=38  Identities=37%  Similarity=0.539  Sum_probs=30.2

Q ss_pred             CCCCCeEEEEc-CCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          156 LKSTDTAVILG-QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       156 ~~~~k~vvVIG-~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      +++++.++|.| +|-+|.++|..|++                    .|+++|.++.|++
T Consensus         6 ~~p~gt~lVTGgs~GIG~a~a~~la~--------------------~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           6 WKPTGTVLVTGGTGGVGGQIARWLAR--------------------RGAPHLLLVSRSG   44 (259)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHH--------------------HTCSEEEEEESSG
T ss_pred             cCCcCEEEEECCCcHHHHHHHHHHHH--------------------CCCCEEEEEeCCc
Confidence            55778899999 47899999999996                    5776677777763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.97  E-value=0.23  Score=38.62  Aligned_cols=38  Identities=16%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..+..+|+|+|+|+.|+.++..++..+ ..+|+++|.++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~   62 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHK   62 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChH
Confidence            445678999999999999999999987 34688887653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.97  E-value=0.18  Score=38.36  Aligned_cols=32  Identities=9%  Similarity=0.152  Sum_probs=28.9

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |||.|||+|-.|-+.|..|.+.+  .+++++++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~--~~i~v~~r~   32 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTP--HELIISGSS   32 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS--CEEEEECSS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCC--CeEEEEcCh
Confidence            68999999999999999999886  899998865

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.94  E-value=0.087  Score=38.92  Aligned_cols=45  Identities=22%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEE-EEcCCCCCcccccccc
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVD-IIDRLPTPFGLVRSGV   64 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~-vie~~~~~gg~~~~~~   64 (334)
                      +.+|+|+|||-+|.+.+.++.... +++++ .||.++..-|..-.|+
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~-~~~iv~fiDdd~~k~G~~I~Gi   48 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGG   48 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTE
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcC-CcEEEEEEeCchHhcCCEECCE
Confidence            469999999999999988775543 56654 5676666555444443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=89.78  E-value=0.12  Score=44.71  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=28.8

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCc
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP  214 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~  214 (334)
                      .|+|||+|..|+-+|..|++                    .|. +|.|+++.+.
T Consensus         6 DviIVGsG~aG~v~A~~La~--------------------~G~-kVlvLEaG~~   38 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVG--------------------AGY-KVAMFDIGEI   38 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSCC
T ss_pred             cEEEECcCHHHHHHHHHHhh--------------------CCC-eEEEEecCCC
Confidence            59999999999999999996                    565 6999998753

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.72  E-value=0.08  Score=43.22  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=28.0

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|+|||+|+.|+.+|..+++                    .|.+.|.|++...
T Consensus         5 DvvVIG~GpAG~~aAi~aa~--------------------~g~k~V~vie~~~   37 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAAS--------------------LHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------HHCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHH--------------------cCCCEEEEEEEec
Confidence            58999999999999999886                    5666799998764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.67  E-value=0.17  Score=38.39  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHcc
Q 019876          158 STDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +.++|+|||+|.+|.-+|..|+.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~   26 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQ   26 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh
Confidence            45799999999999999998886

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.66  E-value=0.22  Score=38.82  Aligned_cols=48  Identities=19%  Similarity=0.228  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHccCC-cccccccccHHHHHHHhcCCc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLRPT-EELATTDIASYAWTALEGSSI  203 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~-~~~~~~~~~~~~~~~~~~~~~  203 (334)
                      +++++.|+|+|+|.+|+-.+..+.... .++-..|..+.-++..++.|+
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA   75 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA   75 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence            458999999999999999998888632 233334444444444444444

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.65  E-value=0.097  Score=42.26  Aligned_cols=20  Identities=25%  Similarity=0.476  Sum_probs=19.0

Q ss_pred             eEEEEcCCHHHHHHHHHHcc
Q 019876          161 TAVILGQGNVALDVARILLR  180 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +|+|||+|.+|+-+|..|++
T Consensus         2 kV~VIGaGi~GlstA~~L~~   21 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHE   21 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEECchHHHHHHHHHHHH
Confidence            69999999999999999996

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.61  E-value=0.22  Score=37.46  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=28.0

Q ss_pred             CeEEEEC-CchHHHHHHHHHhhcCCCCeEEEEcC
Q 019876           20 LRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDR   52 (334)
Q Consensus        20 ~~vvIIG-aG~aGl~aA~~l~~~~~~~~v~vie~   52 (334)
                      .||.||| +|..|.++|..+...+---++.++|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            3899999 69999999999998864457999985

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.54  E-value=0.22  Score=38.71  Aligned_cols=48  Identities=8%  Similarity=0.067  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHccCC-cccccccccHHHHHHHhcCCc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLRPT-EELATTDIASYAWTALEGSSI  203 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~-~~~~~~~~~~~~~~~~~~~~~  203 (334)
                      ++++++|+|+|+|.+|+-++..+.... ..+-..|..+.-++..++.|+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa   73 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA   73 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC
Confidence            568999999999999999888877522 233344444444444444444

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.19  Score=38.74  Aligned_cols=36  Identities=25%  Similarity=0.109  Sum_probs=32.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      -..++++|||-|..|-.+|..++..+  .+|+++|..|
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G--~~V~v~e~dp   57 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFG--ARVIITEIDP   57 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCC--CeeEeeeccc
Confidence            35789999999999999999999997  9999999763

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.29  E-value=0.2  Score=41.40  Aligned_cols=58  Identities=16%  Similarity=0.235  Sum_probs=38.5

Q ss_pred             CCeEEEEcC-CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          159 TDTAVILGQ-GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       159 ~k~vvVIG~-G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      -|+|+|.|| |++|-.++..|.+                    .|. +|+++.|................+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~--------------------~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLD--------------------LGH-PTFLLVRESTASSNSEKAQLLESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH--------------------TTC-CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH--------------------CCC-eEEEEECCCccccchhHHHHHHhhccCCcEEEE
Confidence            378999997 9999999999986                    565 599998875432222122223344456666654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.11  E-value=0.093  Score=41.39  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++-+|+|||+|.+|+..++....                    +|+ +|+++..+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~--------------------lGA-~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKR--------------------LGA-VVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHH--------------------cCC-EEEEEeccH
Confidence            35799999999999999998886                    676 488887664

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.91  E-value=0.3  Score=37.23  Aligned_cols=25  Identities=12%  Similarity=0.089  Sum_probs=21.3

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +.++++|+|+|+|.+|+=++..+..
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~   49 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARA   49 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHH
Confidence            3478999999999999998877765

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.74  E-value=0.22  Score=39.95  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=30.6

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      -..++|+|||+|.+|+-+|..+.+.+  .+++++-+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~--~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQA--AELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHB--SEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhh--cccccccccc
Confidence            36799999999999999999999986  7777776654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.55  E-value=0.17  Score=41.74  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=30.6

Q ss_pred             CCeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +|||+|.|| |+.|-..+..|.+.|  ++|+.+++.+
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g--~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKN--VEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSS--EEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC--CEEEEeechh
Confidence            579999998 999999999999987  9999998764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.37  E-value=0.25  Score=38.09  Aligned_cols=36  Identities=22%  Similarity=0.155  Sum_probs=29.1

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .+...|+|+|+|+.|+.++..++..+ ...|++++.+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~   66 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVK   66 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESS
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhc-Ccccccccch
Confidence            45678999999999999999998887 3466777765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.36  E-value=0.37  Score=37.11  Aligned_cols=38  Identities=18%  Similarity=0.109  Sum_probs=31.3

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..+...|+|+|+|..|+.++..++..+ ..+|++++.++
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~   63 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINK   63 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcH
Confidence            445678999999999999999999886 45888887653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=88.34  E-value=0.19  Score=39.81  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=28.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++|+|||+|..|.-+|..|++                    .| .+|++..|..
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~--------------------~g-~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSK--------------------KC-REVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--------------------TE-EEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEecH
Confidence            589999999999999999996                    44 4699988753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=88.34  E-value=0.35  Score=37.02  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +..+++|+|+|+|.+|+-++..+..
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~   48 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKA   48 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhh
Confidence            3478999999999999999887775

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.33  E-value=0.23  Score=39.08  Aligned_cols=35  Identities=31%  Similarity=0.452  Sum_probs=30.8

Q ss_pred             CCCeEEEEc-CCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILG-QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG-~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++|+|+|.| +|.+|.++|..|++                    .|+ +|+++.|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~--------------------~G~-~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAG--------------------EGA-EVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH--------------------TTC-EEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHh--------------------hcc-chhhcccch
Confidence            789999999 69999999999996                    687 599998874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.28  E-value=0.27  Score=37.23  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHcc
Q 019876          158 STDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .+++|+|||+|.+|.-+|..|+.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~   27 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMN   27 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHh
Confidence            56899999999999999988875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.22  E-value=0.18  Score=39.18  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++++|+|+|+|-+|--++..|..                     +.++|+|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~---------------------~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQ---------------------AQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHH---------------------TTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcc---------------------cCceeeeccchH
Confidence            68999999999999888888874                     446899998873

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.21  E-value=0.27  Score=38.24  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      +.++|+|||+|-++-+++..|.+.   .+|+|+.|.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~---~~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKD---NNIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSS---SEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc---cceeeehhh
Confidence            568999999999999999888665   389999886

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.07  E-value=0.26  Score=37.23  Aligned_cols=21  Identities=38%  Similarity=0.452  Sum_probs=19.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHcc
Q 019876          160 DTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      |+|+|||+|++|.-+|..|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~   22 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIA   22 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHh
Confidence            799999999999999988774

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.97  E-value=0.19  Score=39.01  Aligned_cols=36  Identities=14%  Similarity=0.190  Sum_probs=23.2

Q ss_pred             CCCeEEEECCchHHHHHHH-HHhhcCCC---CeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAE-KTLKAHQE---AQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~-~l~~~~~~---~~v~vie~~   53 (334)
                      +..||+|||||..|...+. .+...-+.   .+++++|-+
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did   41 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND   41 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCC
Confidence            4579999999987754332 33322222   489999865

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.90  E-value=0.51  Score=36.17  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.9

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ++++++|+|+|+|.+|+-++..++.
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~   50 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHS   50 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEecCCccchHHHHHHH
Confidence            5688999999999999988888776

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=0.82  Score=34.96  Aligned_cols=79  Identities=15%  Similarity=0.182  Sum_probs=48.6

Q ss_pred             CCCCCeEEEEcC-CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceE
Q 019876          156 LKSTDTAVILGQ-GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY  234 (334)
Q Consensus       156 ~~~~k~vvVIG~-G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~  234 (334)
                      +.++++|+|+|+ |.+|+-+...+....-+.-.+.-.+.-++.+++.|+.+|. -++...     ..+.+++.....+++
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi-~~~~~~-----~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVF-NHREVN-----YIDKIKKYVGEKGID   99 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTSTT-----HHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccccc-cccccc-----HHHHhhhhhccCCce
Confidence            457899999996 9999877776665444443333345556666666765432 222211     125566666677888


Q ss_pred             EEEccC
Q 019876          235 VHIRED  240 (334)
Q Consensus       235 ~~~~~~  240 (334)
                      +.++..
T Consensus       100 ~v~d~~  105 (174)
T d1yb5a2         100 IIIEML  105 (174)
T ss_dssp             EEEESC
T ss_pred             EEeecc
Confidence            887653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.68  E-value=0.46  Score=35.64  Aligned_cols=42  Identities=19%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             CCeEEEECC-chHHHHHHHHHhhc-CCCCeEEEEcCCCCCcccc
Q 019876           19 PLRVCVVGS-GPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLV   60 (334)
Q Consensus        19 ~~~vvIIGa-G~aGl~aA~~l~~~-~~~~~v~vie~~~~~gg~~   60 (334)
                      +++|+|||| |..|.....-|.++ .|..++..+..+...|-.+
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i   45 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM   45 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce
Confidence            589999998 99999999988754 4778998887665555433

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=87.62  E-value=0.26  Score=38.30  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=25.4

Q ss_pred             CCeEEEECCchHHHHHHHH--HhhcC--CCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEK--TLKAH--QEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~--l~~~~--~~~~v~vie~~~   54 (334)
                      .+||+|||||..|.+++..  +.+..  ...+++++|.++
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            5799999999999775542  33221  235999999763

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.51  E-value=0.33  Score=37.65  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      ++|+|+|+|+|-++--++..|.+                    .+  +|+|+.|.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~--------------------~~--~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAK--------------------DN--NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTS--------------------SS--EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcc--------------------cc--ceeeehhh
Confidence            68999999999999888888864                    33  79999886

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=87.48  E-value=0.23  Score=37.26  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=19.1

Q ss_pred             CeEEEEcCCHHHHHHHHHHcc
Q 019876          160 DTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ++|.|||+|.+|.-+|..|+.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~   22 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAA   22 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHh
Confidence            689999999999999988875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=87.45  E-value=0.3  Score=37.52  Aligned_cols=36  Identities=25%  Similarity=0.160  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      -..++++|+|=|..|-.+|..|+..+  .+|+|.|.+|
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~G--a~V~V~E~DP   56 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLG--ARVYITEIDP   56 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCH
T ss_pred             ecCCEEEEecccccchhHHHHHHhCC--CEEEEEecCc
Confidence            35789999999999999999999998  9999999874

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.32  E-value=0.33  Score=35.47  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=19.0

Q ss_pred             CeEEEEcCCHHHHHHHHHHcc
Q 019876          160 DTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      |+++|+|.|..|.+++..|..
T Consensus         1 kHivI~G~g~~g~~l~~~L~~   21 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRG   21 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCG
T ss_pred             CEEEEECCCHHHHHHHHHHcC
Confidence            689999999999999998863

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.10  E-value=0.33  Score=39.78  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        19 ~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..+|+|||+|..|-.+|..|.+.| =-+++|+|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAG-VGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEECCcc
Confidence            479999999999999999999998 34999999763

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.86  E-value=0.4  Score=37.61  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             CCCeEEEEC-CchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIG-aG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +.++++|.| +|-.|..+|..|.+.|  .+|++++++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G--~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhc--cchhhcccch
Confidence            578999999 5789999999999997  9999999873

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.85  E-value=0.41  Score=37.47  Aligned_cols=60  Identities=20%  Similarity=0.166  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEE
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI  237 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~  237 (334)
                      .+++|.|||.|.+|-.+|..+..                    .|. +|....|...-........+.++++...+-+..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~--------------------~g~-~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~   99 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAA--------------------LGA-QVRGFSRTPKEGPWRFTNSLEEALREARAAVCA   99 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHH--------------------TTC-EEEEECSSCCCSSSCCBSCSHHHHTTCSEEEEC
T ss_pred             cCceEEEeccccccccceeeeec--------------------ccc-ccccccccccccceeeeechhhhhhccchhhcc
Confidence            68999999999999999998885                    787 599888775322211223567788777766553


Q ss_pred             c
Q 019876          238 R  238 (334)
Q Consensus       238 ~  238 (334)
                      -
T Consensus       100 ~  100 (181)
T d1qp8a1         100 L  100 (181)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.79  E-value=0.32  Score=37.42  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=27.2

Q ss_pred             eEEEE-cCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVIL-GQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVI-G~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      +|+|| |+|.+|.-+|..|++                    .|. +|++..|+.
T Consensus         2 ki~vigGaG~iG~alA~~la~--------------------~G~-~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLAT--------------------LGH-EIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT--------------------TTC-EEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHH--------------------CCC-EEEEEECCH
Confidence            58899 679999999999997                    676 599998864

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=86.75  E-value=0.18  Score=43.38  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=27.4

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .|+|||+|..|+-+|..+++                    .|. +|+|+++.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~--------------------~G~-~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQ--------------------SGQ-TCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHH--------------------TTC-CCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--------------------cCC-eEEEEeCCC
Confidence            58999999999999999986                    575 599998764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.70  E-value=0.21  Score=44.89  Aligned_cols=34  Identities=18%  Similarity=0.383  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      ..+|+|||.|.+|+|++..|+.                    .|+.+++|+...
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~--------------------~Gvg~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLAL--------------------SGFRQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHT--------------------TTCCCEEEECCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEEECC
Confidence            4789999999999999999996                    799899999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.63  E-value=0.32  Score=37.30  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=28.8

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      +.++++|+|+|+|.+|+-++..+..                    .|+ +|.++.+++
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~--------------------~G~-~vi~~~~~~   61 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKA--------------------MGA-ETYVISRSS   61 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHH--------------------HTC-EEEEEESSS
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhh--------------------ccc-cccccccch
Confidence            4578999999999999987776654                    577 477777764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.58  E-value=0.49  Score=32.85  Aligned_cols=73  Identities=16%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             CCCCCCeEEEECCchHHHHH-HHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCe
Q 019876           15 LSSNPLRVCVVGSGPAGFYT-AEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV   93 (334)
Q Consensus        15 ~~~~~~~vvIIGaG~aGl~a-A~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (334)
                      .....++|-+||-|=+||++ |..|.++|  ++|+-.|....                 .    ..+.+.+.|+.+..+.
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G--~~VsGSD~~~~-----------------~----~~~~L~~~Gi~v~~g~   60 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEG--YQISGSDIADG-----------------V----VTQRLAQAGAKIYIGH   60 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHT--CEEEEEESCCS-----------------H----HHHHHHHTTCEEEESC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCC--CEEEEEeCCCC-----------------h----hhhHHHHCCCeEEECC
Confidence            34567899999999999998 89999997  99999987531                 1    1123345688876554


Q ss_pred             EEceEEecccceeccCeEEEeccC
Q 019876           94 TLGSSVSLSELRQLYHVVVLAYGA  117 (334)
Q Consensus        94 ~v~~~v~~~~~~~~yd~lIlATGs  117 (334)
                      .-.      . ....|.||+.++.
T Consensus        61 ~~~------~-i~~~d~vV~S~AI   77 (96)
T d1p3da1          61 AEE------H-IEGASVVVVSSAI   77 (96)
T ss_dssp             CGG------G-GTTCSEEEECTTS
T ss_pred             ccc------c-CCCCCEEEECCCc
Confidence            321      1 1256877776665

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=86.39  E-value=0.36  Score=36.15  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHcc
Q 019876          160 DTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ++|+|||+|.+|.-+|..|..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~   22 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMAL   22 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHh
Confidence            579999999999999988875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=86.38  E-value=0.36  Score=36.94  Aligned_cols=25  Identities=8%  Similarity=0.084  Sum_probs=21.2

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +..+++|+|+|+|.+|+-++..+..
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~   52 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHA   52 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhc
Confidence            4589999999999999888877664

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.99  E-value=0.48  Score=38.34  Aligned_cols=36  Identities=28%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      -...+|++.|+|.||+..|..+.+.+ -.++.++|+.
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~-~~~i~~~D~~   59 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLG-VKNVVAVDRK   59 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHT-CCEEEEEETT
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhc-ccceEeecce
Confidence            35689999999999999999998876 4689999986

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.90  E-value=0.45  Score=36.68  Aligned_cols=25  Identities=20%  Similarity=0.221  Sum_probs=21.7

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +.++++|+|+|+|.+|+-++..+..
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~   50 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKV   50 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccc
Confidence            4588999999999999998887765

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.89  E-value=0.43  Score=43.40  Aligned_cols=43  Identities=19%  Similarity=0.120  Sum_probs=38.2

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccc
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR   61 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~   61 (334)
                      +...+|+|+|-|..=.-.|..|.+.|  .+|.-+|++++.||.|.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~G--kkVLHiD~N~yYGg~~a   46 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSG--QRVLHVDSRSYYGGNWA   46 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcC--CEEEEecCCCcCCCccc
Confidence            35689999999999988888999997  99999999999888774

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.84  E-value=0.53  Score=37.74  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CCCeEEEECCchHHHHHHHHHhh--------------------cCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLK--------------------AHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~--------------------~~~~~~v~vie~~~   54 (334)
                      ..++|+|||+|-.++-||..|.+                    .+ --+|+++.++.
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~-~~~V~iv~RRg   93 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRG-IQEVVIVGRRG   93 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCC-CCEEEEECSSC
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcC-CceEEEEEECC
Confidence            46899999999999999998873                    33 35799998864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=85.65  E-value=0.59  Score=36.50  Aligned_cols=35  Identities=29%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|.|||.|..|-..|..+...+  .+|..+++.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g--~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALG--AQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccc--cccccccccc
Confidence            5689999999999999999999987  9999998764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=85.48  E-value=0.99  Score=38.45  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             CCCeEEEEcC-CHHHHHHHHHHcc
Q 019876          158 STDTAVILGQ-GNVALDVARILLR  180 (334)
Q Consensus       158 ~~k~vvVIG~-G~~g~e~A~~L~~  180 (334)
                      +.|+|+|+|| |++|-.++..|.+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~   25 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAA   25 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHh
Confidence            4589999995 9999999999986

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.24  E-value=0.56  Score=37.86  Aligned_cols=37  Identities=19%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcC-------------------CCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAH-------------------QEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~-------------------~~~~v~vie~~~   54 (334)
                      ..++|+|||+|-.++=||..|.+..                   .--+|+++.++.
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            4689999999999999999998731                   136899999874

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.19  E-value=0.22  Score=37.89  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=26.8

Q ss_pred             CCCeEEEECC-chHHHHHHHHHhhcC-----CCCeEEEEcCC
Q 019876           18 NPLRVCVVGS-GPAGFYTAEKTLKAH-----QEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGa-G~aGl~aA~~l~~~~-----~~~~v~vie~~   53 (334)
                      .++||+|||| |..|.++|..|....     ....+.++|..
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            4679999996 999999999987643     12356666653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.87  E-value=0.59  Score=35.29  Aligned_cols=22  Identities=18%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             CCeEEEEcCCHHHHHHHHHHcc
Q 019876          159 TDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ..+|+|||+|.+|.-+|..|..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~   24 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQ   24 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHh
Confidence            3689999999999999987765

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.82  E-value=3.6  Score=34.77  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCCCCccccccccCCCCcchhHHHHHHHHHhhcCCcEEEeCeEEce
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS   97 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~~~gg~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   97 (334)
                      ....+.|||+|.-+..-+..+....|--+|.|+++.+                  +-...+...+...++...       
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~------------------e~~~~~~~~~~~~~~~~~-------  178 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVRE------------------KAAKKFVSYCEDRGISAS-------  178 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSH------------------HHHHHHHHHHHHTTCCEE-------
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCH------------------HHHHHHHHHHHhcCCccc-------
Confidence            4578999999999988888887766556899998652                  112223333333344321       


Q ss_pred             EEecccceeccCeEEEeccCCCCC
Q 019876           98 SVSLSELRQLYHVVVLAYGAESDR  121 (334)
Q Consensus        98 ~v~~~~~~~~yd~lIlATGs~~p~  121 (334)
                       +...+....+|.|+-||.+..|.
T Consensus       179 -~~~~~a~~~aDiV~taT~s~~P~  201 (320)
T d1omoa_         179 -VQPAEEASRCDVLVTTTPSRKPV  201 (320)
T ss_dssp             -ECCHHHHTSSSEEEECCCCSSCC
T ss_pred             -cchhhhhccccEEEEeccCcccc
Confidence             11222223689999999885443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.76  E-value=0.35  Score=37.05  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=29.0

Q ss_pred             CCCCCeEEEEc-CCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          156 LKSTDTAVILG-QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       156 ~~~~k~vvVIG-~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      +.++++|+|+| +|.+|+-++..+..                    .|..+|+++.+++
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~--------------------~g~~~V~~~~~~~   63 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKA--------------------VSGATIIGVDVRE   63 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHH--------------------HTCCEEEEEESSH
T ss_pred             CCCCCEEEEEeccccceeeeeecccc--------------------cccccccccccch
Confidence            44789999999 59999988887775                    4655677776653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=84.64  E-value=0.56  Score=35.15  Aligned_cols=21  Identities=19%  Similarity=0.298  Sum_probs=18.8

Q ss_pred             CeEEEEcCCHHHHHHHHHHcc
Q 019876          160 DTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .+|+|||+|++|.-+|..|..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~   22 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQ   22 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHh
Confidence            589999999999999988774

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.47  E-value=0.32  Score=37.31  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=23.7

Q ss_pred             CeEEEECCchHHHHHHHHHh-hc---CCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTL-KA---HQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~-~~---~~~~~v~vie~~   53 (334)
                      |||+|||||..|...+.... +.   .+..+++++|.+
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did   38 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDID   38 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecC
Confidence            68999999988766665432 21   123589999875

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=84.44  E-value=0.41  Score=42.12  Aligned_cols=33  Identities=27%  Similarity=0.280  Sum_probs=27.7

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .++|||+|..|+-+|..|++                    .+..+|-|+++..
T Consensus        26 D~IIVGsG~aG~vlA~rLae--------------------~~~~~VLlLEaG~   58 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTE--------------------NPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--------------------STTCCEEEEESSC
T ss_pred             eEEEECcCHHHHHHHHHHHH--------------------CCCCeEEEEcCCC
Confidence            58999999999999999996                    4544688888875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.42  E-value=0.62  Score=35.28  Aligned_cols=25  Identities=16%  Similarity=0.149  Sum_probs=21.0

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +.++++|+|+|+|.+|+=++..+..
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~   49 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKA   49 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhc
Confidence            3478999999999999987777765

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=84.27  E-value=0.59  Score=39.97  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=31.0

Q ss_pred             CCCeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++++|+|+|| |..|-..+..|.+.+  ++|+++-|++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G--~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVG--HHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTT--CCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCC--CeEEEEECCc
Confidence            4689999996 999999999999987  8999998764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=84.20  E-value=1.8  Score=33.18  Aligned_cols=80  Identities=10%  Similarity=0.000  Sum_probs=48.0

Q ss_pred             CCCCCeEEEEcC-CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceE
Q 019876          156 LKSTDTAVILGQ-GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY  234 (334)
Q Consensus       156 ~~~~k~vvVIG~-G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~  234 (334)
                      ++++++|+|.|+ |.+|.-+++.......++-.+.-.+.-.+.++..|+.+| +.++...     ..+.+.+.....|++
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~-----~~~~~~~~~~~~Gvd  100 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAA-FNYKTVN-----SLEEALKKASPDGYD  100 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSCS-----CHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhh-ccccccc-----HHHHHHHHhhcCCCc
Confidence            558999999888 557766665555444444334434455666666666544 2222221     124556666778899


Q ss_pred             EEEccCc
Q 019876          235 VHIREDD  241 (334)
Q Consensus       235 ~~~~~~~  241 (334)
                      +.++..-
T Consensus       101 ~v~D~vG  107 (182)
T d1v3va2         101 CYFDNVG  107 (182)
T ss_dssp             EEEESSC
T ss_pred             eeEEecC
Confidence            9988654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=84.18  E-value=0.66  Score=38.37  Aligned_cols=34  Identities=15%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             CCeEEEEcC-CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          159 TDTAVILGQ-GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       159 ~k~vvVIG~-G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      -++|+|+|| |++|..++..|.+                    .|. +|+++.|+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~--------------------~G~-~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASIS--------------------LGH-PTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH--------------------TTC-CEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh--------------------CCC-EEEEEECCC
Confidence            367999996 9999999999986                    564 588888764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=84.14  E-value=1.6  Score=32.44  Aligned_cols=55  Identities=15%  Similarity=0.031  Sum_probs=36.7

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceEEEEcc
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE  239 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~~~~~~  239 (334)
                      .+++|+|.|..|..++..|.+                    .+. +|+++.....-     ..+..+.+...|+.++..+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~--------------------~~~-~v~vId~d~~~-----~~~~~~~~~~~~~~vi~Gd   57 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQ--------------------RGQ-NVTVISNLPED-----DIKQLEQRLGDNADVIPGD   57 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEECCCHH-----HHHHHHHHHCTTCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHH--------------------cCC-CEEEEeccchh-----HHHHHHHhhcCCcEEEEcc
Confidence            589999999999999999986                    554 58888654311     1122233345677777654


Q ss_pred             C
Q 019876          240 D  240 (334)
Q Consensus       240 ~  240 (334)
                      .
T Consensus        58 ~   58 (153)
T d1id1a_          58 S   58 (153)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=84.13  E-value=0.7  Score=36.59  Aligned_cols=34  Identities=26%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..++|.|||-|..|-..|..|...|  .+|..+++.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg--~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFG--AKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhc--ccccccCcc
Confidence            4689999999999999999998886  999999864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=84.11  E-value=0.71  Score=35.40  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.5

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ++++++|+|+|+|-+|.-++..++.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~   50 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKA   50 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHH
Confidence            5689999999999999999988886

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=84.08  E-value=0.69  Score=36.75  Aligned_cols=35  Identities=31%  Similarity=0.227  Sum_probs=31.3

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      -..++|+|.|-|-.|..+|.+|.+.|  .+|++.|.+
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~G--akvvv~d~d   59 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAG--AQLLVADTD   59 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEecch
Confidence            36789999999999999999999997  999988754

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.07  E-value=1.1  Score=34.84  Aligned_cols=45  Identities=29%  Similarity=0.290  Sum_probs=35.1

Q ss_pred             ccccccccCCCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876            7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus         7 ~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |....+....-..+++.|||.|..|-..|..+...+  .+|..+++.
T Consensus        32 W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg--~~v~~~d~~   76 (184)
T d1ygya1          32 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFG--AYVVAYDPY   76 (184)
T ss_dssp             CCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTT--CEEEEECTT
T ss_pred             CCccccccccccceeeeeccccchhHHHHHHhhhcc--ceEEeecCC
Confidence            533333343446789999999999999999998876  999999865

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.88  E-value=1.2  Score=37.37  Aligned_cols=54  Identities=26%  Similarity=0.269  Sum_probs=41.5

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccC--CCHHHHHHHHcCC
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA--CTAKELREILGIK  231 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~--~~~~~~~~~l~~~  231 (334)
                      .+++|+|-|-|++|.-+|..|.+                    .|++-|.+....+.+..+  ++.+++.+.....
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e--------------------~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~   90 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHR--------------------FGAKCVAVGESDGSIWNPDGIDPKELEDFKLQH   90 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--------------------TTCEEEEEEETTEEECCTTCCCHHHHHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--------------------CCCEEEEEEccchhhccccccchHHHHHHHHHc
Confidence            78999999999999999999996                    798766777776655443  4557776665443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.81  E-value=0.39  Score=37.41  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=26.4

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      +|+|||+|..|.-+|..|++                    .| .+|++..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~--------------------~g-~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVD--------------------NG-NEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHH--------------------HC-CEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHH--------------------CC-CEEEEEEec
Confidence            68999999999999999996                    44 469998774

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=83.46  E-value=0.43  Score=41.40  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=27.7

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .++|||+|..|+=+|..|++                    .|. +|.|+++.+
T Consensus         4 D~IIVGsG~aG~v~A~rLae--------------------~g~-~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSE--------------------AGK-KVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhh--------------------CCC-eEEEEEccC
Confidence            48999999999999999996                    564 699999874

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.43  E-value=0.74  Score=39.46  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=31.0

Q ss_pred             CCCeEEEEC-CchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIG-aG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..|||+|.| +|+.|-..+..|.+++  ++|+++++..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g--~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEG--HYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEeCCC
Confidence            568999999 7999999999999997  9999998653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=83.41  E-value=0.84  Score=34.83  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=20.7

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHcc
Q 019876          158 STDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ..++|+|||+|.+|.-+|..|..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~   41 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILG   41 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh
Confidence            45799999999999999998875

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.30  E-value=0.51  Score=40.35  Aligned_cols=37  Identities=22%  Similarity=0.154  Sum_probs=26.9

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      -.|+|||+|..|+-+|..+++.                -++.|. +|.|+++..
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~----------------~~~~G~-~V~vieK~~   58 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYW----------------AKLGGL-KVTLVEKAA   58 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH----------------HTTTTC-CEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHH----------------HHhCcC-EEEEEeCCC
Confidence            3699999999999988877530                012465 599998754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=83.26  E-value=0.74  Score=36.59  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=26.6

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCccccccccc
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIA  191 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~  191 (334)
                      .+++|+|.|-|++|..+|..|.+....+-..|+.
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            7899999999999999999999844444333333

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=83.17  E-value=0.49  Score=39.74  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=26.2

Q ss_pred             CeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       160 k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      -.|+|||+|..|+-+|..+++                    .+  +|.||+..+
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~--------------------~g--~V~llEK~~   39 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLAD--------------------QH--QVIVLSKGP   39 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT--------------------TS--CEEEECSSC
T ss_pred             CCEEEECccHHHHHHHHHhhc--------------------CC--CEEEEECCC
Confidence            369999999999999988875                    34  599998764

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=83.00  E-value=2.5  Score=36.17  Aligned_cols=36  Identities=17%  Similarity=0.189  Sum_probs=28.9

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..+.+.|||+|.-+..-+..+....+--+|.|++++
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~  162 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD  162 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecC
Confidence            457999999999988888877766555688888876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.61  E-value=0.97  Score=34.31  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=29.7

Q ss_pred             CCCCCeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           16 SSNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        16 ~~~~~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..+..+|+|+|+ |+.|+.++..++..+ ...|++++.+
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~   62 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVR   62 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESS
T ss_pred             CCCCCEEEEEeccccceeeeeecccccc-cccccccccc
Confidence            345678999995 999999999888876 3588888865

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.61  E-value=0.65  Score=35.60  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHcc
Q 019876          158 STDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      .+|+|+|+|-|.+|--+|..+..
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg   45 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRG   45 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccccHHHHHHHHh
Confidence            79999999999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=82.49  E-value=0.79  Score=36.26  Aligned_cols=35  Identities=26%  Similarity=0.228  Sum_probs=31.3

Q ss_pred             CCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ..++|.|||.|..|-.+|..|...+  .+|..+++..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg--~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFG--AKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccc--eeeeccCCcc
Confidence            4689999999999999999999886  9999999753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=82.39  E-value=0.71  Score=34.32  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=18.2

Q ss_pred             eEEEEcCCHHHHHHHHHHcc
Q 019876          161 TAVILGQGNVALDVARILLR  180 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +|+|||+|.+|.-+|..|+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~   21 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAE   21 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHh
Confidence            68999999999999988875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.28  E-value=0.86  Score=34.72  Aligned_cols=37  Identities=16%  Similarity=0.039  Sum_probs=28.7

Q ss_pred             CCCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        16 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      ..+..+|+|+|+|..|+.++..++..+ ...|++.+.+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~   62 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDIN   62 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEccc
Confidence            345678999999999999999999887 2355556544

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.16  E-value=0.73  Score=36.24  Aligned_cols=37  Identities=27%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             CCCeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      ++++|+|.|| |..|-..+..|.+.+.-.+|+.+.+++
T Consensus         1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            3589999999 999999999999987223666665543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.10  E-value=1.2  Score=34.64  Aligned_cols=36  Identities=14%  Similarity=0.051  Sum_probs=31.7

Q ss_pred             CCCCeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        17 ~~~~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      -..++|.|||.|..|-..|..+...+  .+|..+++..
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg--~~v~~~d~~~   77 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAESLG--MYVYFYDIEN   77 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred             ccceEEEEeecccchhhhhhhccccc--ceEeeccccc
Confidence            35789999999999999999998886  9999998753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.92  E-value=0.81  Score=38.91  Aligned_cols=35  Identities=23%  Similarity=0.104  Sum_probs=31.1

Q ss_pred             CCCeEEEEC-CchHHHHHHHHHhhcCCCCeEEEEcCCC
Q 019876           18 NPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP   54 (334)
Q Consensus        18 ~~~~vvIIG-aG~aGl~aA~~l~~~~~~~~v~vie~~~   54 (334)
                      +.+||+|.| +|+.|...+..|.+.|  ++|..+++..
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g--~~V~~~~r~~   42 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMG--ATVKGYSLTA   42 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCC
Confidence            458999999 6799999999999997  8999999764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.86  E-value=0.8  Score=34.99  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ++++++|+|+|+|.+|+=++..+..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~   54 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKV   54 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHh
Confidence            3478999999999999998887764

>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=81.85  E-value=1.4  Score=31.02  Aligned_cols=34  Identities=9%  Similarity=0.231  Sum_probs=29.5

Q ss_pred             CeEEEECCchHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        20 ~~vvIIGaG~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      |+|.|.=+|.+|++....+++..|+.+++-+-..
T Consensus         1 mkIgifDSGiGGLtVl~~l~~~lP~~~~iY~~D~   34 (105)
T d1b74a1           1 MKIGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDT   34 (105)
T ss_dssp             CEEEEEESSSTHHHHHHHHHHHSSSCEEEEEECG
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHCCCCCEEEEecC
Confidence            6899999999999999999999988887766543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=81.79  E-value=0.62  Score=40.67  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=27.3

Q ss_pred             eEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .++|||+|..|+=+|..|++                    .+..+|-|+++.+
T Consensus        19 D~IIVGsG~aG~vlA~rLse--------------------~~~~~VLvLEaG~   51 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTE--------------------NPNISVLVIESGS   51 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--------------------STTCCEEEEESSC
T ss_pred             EEEEECcCHHHHHHHHHHHH--------------------CCCCeEEEECCCC
Confidence            68999999999999999986                    3434688888874

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.71  E-value=1.4  Score=33.55  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             CCeEEEEcCCHHHHHHHHHHcc
Q 019876          159 TDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       159 ~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ..+|+|||+|.+|.-+|..|..
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~   40 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILL   40 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHh
Confidence            3579999999999999998886

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.32  E-value=1.6  Score=33.27  Aligned_cols=80  Identities=18%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             CCCCCeEEEEcC-CHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecCccccCCCHHHHHHHHcCCceE
Q 019876          156 LKSTDTAVILGQ-GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY  234 (334)
Q Consensus       156 ~~~~k~vvVIG~-G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~~~~~~~~~~~~~~~l~~~gv~  234 (334)
                      +.++++|+|.|+ |.+|+-+++.+.....+.-.+.-.+.-.+.+++.|+.++ +.++...+     .+++.+.....|++
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~v-i~~~~~~~-----~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDF-----ADEILELTDGYGVD   96 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEE-EETTCSTH-----HHHHHHHTTTCCEE
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccccc-ccCCccCH-----HHHHHHHhCCCCEE
Confidence            457899999886 999988777666544333233333445677777887643 22222111     25566666667899


Q ss_pred             EEEccCc
Q 019876          235 VHIREDD  241 (334)
Q Consensus       235 ~~~~~~~  241 (334)
                      +.++...
T Consensus        97 ~v~d~~g  103 (183)
T d1pqwa_          97 VVLNSLA  103 (183)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9887543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.19  E-value=1  Score=34.44  Aligned_cols=35  Identities=14%  Similarity=0.045  Sum_probs=29.2

Q ss_pred             CCCCeEEEECC-chHHHHHHHHHhhcCCCCeEEEEcCC
Q 019876           17 SNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL   53 (334)
Q Consensus        17 ~~~~~vvIIGa-G~aGl~aA~~l~~~~~~~~v~vie~~   53 (334)
                      .+..+|+|+|+ |+.|+.+...++..|  ++|+.+...
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~   62 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGT   62 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred             CCCCEEEEEeccccccccccccccccC--ccccccccc
Confidence            45679999996 999999999888886  898887754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=80.96  E-value=0.82  Score=34.08  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             CCCeEEEEc-CCHHHHHHHHHHcc
Q 019876          158 STDTAVILG-QGNVALDVARILLR  180 (334)
Q Consensus       158 ~~k~vvVIG-~G~~g~e~A~~L~~  180 (334)
                      .-++|+||| .|..|--+|..|.+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~   31 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRA   31 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHH
Confidence            348999999 69999999999997

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.64  E-value=0.6  Score=42.93  Aligned_cols=35  Identities=6%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeec
Q 019876          158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR  212 (334)
Q Consensus       158 ~~k~vvVIG~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~  212 (334)
                      ...+|+|||.|.+|+|+|..|+.                    .|+.++||+...
T Consensus        24 ~~s~VlvvG~gglG~Ei~knLvl--------------------~GVg~itivD~d   58 (529)
T d1yova1          24 ESAHVCLINATATGTEILKNLVL--------------------PGIGSFTIIDGN   58 (529)
T ss_dssp             HHCEEEECCCSHHHHHHHHHHHT--------------------TTCSEEEEECCS
T ss_pred             hCCCEEEECCCHHHHHHHHHHHH--------------------hcCCEEEEEcCC
Confidence            35799999999999999999996                    799999999654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.53  E-value=0.8  Score=38.95  Aligned_cols=35  Identities=11%  Similarity=-0.050  Sum_probs=30.0

Q ss_pred             CCCeEEEEc-CCHHHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILG-QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG-~G~~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      ++|+|+|.| +|++|..++..|.+                    .|. +|..+.|..
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~--------------------~g~-~V~~~~r~~   42 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQT--------------------MGA-TVKGYSLTA   42 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH--------------------TTC-EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH--------------------CCC-EEEEEECCC
Confidence            789999999 68999999999996                    565 588888864

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.49  E-value=0.9  Score=34.61  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             CCCCCeEEEEcCCHHHHHHHHHHcc
Q 019876          156 LKSTDTAVILGQGNVALDVARILLR  180 (334)
Q Consensus       156 ~~~~k~vvVIG~G~~g~e~A~~L~~  180 (334)
                      ++++++|+|+|+|.+|+-++..+..
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~   50 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKV   50 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHH
Confidence            5689999999999999888877775

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.15  E-value=0.84  Score=34.03  Aligned_cols=20  Identities=25%  Similarity=0.192  Sum_probs=18.0

Q ss_pred             eEEEEcCCHHHHHHHHHHcc
Q 019876          161 TAVILGQGNVALDVARILLR  180 (334)
Q Consensus       161 ~vvVIG~G~~g~e~A~~L~~  180 (334)
                      +|+|||+|.+|..+|..|+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~   21 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLL   21 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHh
Confidence            68999999999999988774

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.06  E-value=2  Score=33.03  Aligned_cols=35  Identities=17%  Similarity=0.309  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCH-HHHHHHHHHccCCcccccccccHHHHHHHhcCCcceEEEEeecC
Q 019876          158 STDTAVILGQGN-VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG  213 (334)
Q Consensus       158 ~~k~vvVIG~G~-~g~e~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~Vtiv~r~~  213 (334)
                      .||+|+|||-|+ +|.-+|..|++                    .++ .|++++...
T Consensus        28 ~GK~vvVIGrS~iVG~Pla~lL~~--------------------~ga-TVt~~~~~~   63 (171)
T d1edza1          28 YGKKCIVINRSEIVGRPLAALLAN--------------------DGA-TVYSVDVNN   63 (171)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHT--------------------TSC-EEEEECSSE
T ss_pred             CCCEEEEECCccccHHHHHHHHHH--------------------CCC-EEEEecccc
Confidence            799999999665 69999999996                    677 588887654