Citrus Sinensis ID: 019890

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----

MRSRFTLALARTLTSRTRPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMVSGSGP

cccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccEEEcccccccccccccccccccHHHHHHHHHHHHHccccccc

cccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccEEcccccccHHHHHHHHHHccccEEEcHcccccccHcccccccccEEEEEEEEcccccccccccEccccccccccccccHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHcccccHHHHcHHcccccccHHHHHHHHHHHHHHcccccccccEHHccccccHHHHHHHHHHHHHccccEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHcccc

MRSRFTLALARTLtsrtrpfsssaqtpptepptkfpqtLAGLRARLasespalsdfidlqsnssysvevgtkkkplpkpkwmkesipggdkYVQIKKKLRELKLhtvceeakcpnlgecwsggetgtATATIMILGdtctrgcrfcnvktsrappppdpdeptnVAEAIASWGLDYVVITsvdrddladqgsghFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAkdyvpagtltktsimlgcgetpdQVVSTMEKVRAAgvdvmtfgqymrpskrhmpvseyitPEAFERYRALGMEMVSGSGP

MRSRFTLALArtltsrtrpfsssaqtpptepptKFPQTLAGLRARLASESPALSDFIdlqsnssysvevgtkkkplpkpkwmkesipggdkyVQIKKKLRELKLHtvceeakcpnlgecwsggETGTATATIMILGDTCTRGCRFCNVKtsrappppdpdEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVdvmtfgqymrpskrhmpvseYITPEAFERYRALGMEMVSGSGP

MrsrftlalartltsrtrPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTkkkplpkpkWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAppppdpdepTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMVSGSGP

****************************************************************************************GDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVK***************VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR*******VSEYITPEAFERYR************

********************************************************************************WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMVSGSG*

MRSRFTLALARTLTS******************KFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTS***********TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMVSGSGP

************************************QTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMVSGSGP

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		334	2.2.26 [Sep-21-2011]
B9H5L9		385	Lipoyl synthase, mitochon	yes	no	1.0	0.867	0.811	1e-152
B7FM45		378	Lipoyl synthase, mitochon	N/A	no	0.997	0.880	0.792	1e-150
B9RW49		348	Lipoyl synthase, mitochon	N/A	no	0.949	0.910	0.830	1e-148
Q3LSN5		376	Lipoyl synthase 2, mitoch	N/A	no	1.0	0.888	0.797	1e-146
Q3LSN4		376	Lipoyl synthase 1, mitoch	N/A	no	1.0	0.888	0.797	1e-145
A5CB81		393	Lipoyl synthase, mitochon	yes	no	0.919	0.781	0.812	1e-145
Q9ZWT1		374	Lipoyl synthase, mitochon	yes	no	0.985	0.879	0.771	1e-138
A2XU53		382	Lipoyl synthase, mitochon	N/A	no	0.865	0.756	0.788	1e-136
Q7XRF1		382	Lipoyl synthase, mitochon	yes	no	0.865	0.756	0.785	1e-135
C5Y9R0		386	Lipoyl synthase, mitochon	N/A	no	0.874	0.756	0.771	1e-135

>sp\|B9H5L9\|LIAS_POPTR Lipoyl synthase, mitochondrial OS=Populus trichocarpa GN=LIP1 PE=3 SV=1	Back alignment and function desciption

 Score =  537 bits (1383), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/355 (81%), Positives = 305/355 (85%), Gaps = 21/355 (5%)

Query: 1   MRSRFTLALARTLTSRT-----RPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSD 55
           M+SRFT    RTL S T     R FSSS     T+ P +F QTLAGLRARLA ESP LSD
Sbjct: 1   MQSRFTFLATRTLKSTTTKAKNRTFSSSTVESSTKQPPQFSQTLAGLRARLAVESPTLSD 60

Query: 56  FIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115
           FI LQSN++YSVEVGTKKKPLPKPKWM+E+IPGG+KYVQIKKKLRELKLHTVCEEAKCPN
Sbjct: 61  FIHLQSNNTYSVEVGTKKKPLPKPKWMREAIPGGEKYVQIKKKLRELKLHTVCEEAKCPN 120

Query: 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLD 175
           LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EPTNVAEAIASWGLD
Sbjct: 121 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPNEPTNVAEAIASWGLD 180

Query: 176 YVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------------VAKSGLNV 222
           YVVITSVDRDDLADQGSGHFA+TV KLK LKPNMLIEAL             VAKSGL+V
Sbjct: 181 YVVITSVDRDDLADQGSGHFAETVHKLKTLKPNMLIEALVPDFRGDRGCVEKVAKSGLDV 240

Query: 223 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 282
           FAHNIETVEELQS+VRDHRANFKQSLDVLMMAK+Y P GTLTKTSIMLGCGE P+QVV T
Sbjct: 241 FAHNIETVEELQSSVRDHRANFKQSLDVLMMAKEYAPPGTLTKTSIMLGCGEAPEQVVKT 300

Query: 283 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM---VSGSGP 334
           MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP+AFE+Y+ LGMEM      SGP
Sbjct: 301 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPDAFEKYKTLGMEMGFRYVASGP 355

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
Populus trichocarpa (taxid: 3694)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 8

>sp\|B7FM45\|LIAS_MEDTR Lipoyl synthase, mitochondrial OS=Medicago truncatula GN=LIP1 PE=2 SV=1	Back alignment and function description

>sp\|B9RW49\|LIAS_RICCO Lipoyl synthase, mitochondrial OS=Ricinus communis GN=LIP1 PE=3 SV=1	Back alignment and function description

>sp\|Q3LSN5\|LIAS2_PEA Lipoyl synthase 2, mitochondrial OS=Pisum sativum GN=LIP1-2 PE=2 SV=1	Back alignment and function description

>sp\|Q3LSN4\|LIAS1_PEA Lipoyl synthase 1, mitochondrial OS=Pisum sativum GN=LIP1-1 PE=2 SV=1	Back alignment and function description

>sp\|A5CB81\|LIAS_VITVI Lipoyl synthase, mitochondrial OS=Vitis vinifera GN=LIP1 PE=3 SV=1	Back alignment and function description

>sp\|Q9ZWT1\|LIAS_ARATH Lipoyl synthase, mitochondrial OS=Arabidopsis thaliana GN=LIP1 PE=2 SV=1	Back alignment and function description

>sp\|A2XU53\|LIAS_ORYSI Lipoyl synthase, mitochondrial OS=Oryza sativa subsp. indica GN=LIP1 PE=3 SV=2	Back alignment and function description

>sp\|Q7XRF1\|LIAS_ORYSJ Lipoyl synthase, mitochondrial OS=Oryza sativa subsp. japonica GN=LIP1 PE=2 SV=2	Back alignment and function description

>sp\|C5Y9R0\|LIAS_SORBI Lipoyl synthase, mitochondrial OS=Sorghum bicolor GN=LIP1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		334
118489021		385	unknown [Populus trichocarpa x Populus d	1.0	0.867	0.811	1e-151
224081274		385	predicted protein [Populus trichocarpa]	1.0	0.867	0.811	1e-150
388520169		378	unknown [Medicago truncatula]	0.997	0.880	0.794	1e-149
388511141		378	unknown [Medicago truncatula]	0.997	0.880	0.792	1e-149
308191435		378	RecName: Full=Lipoyl synthase, mitochond	0.997	0.880	0.792	1e-149
356549944		378	PREDICTED: lipoyl synthase 2, mitochondr	0.997	0.880	0.797	1e-148
356543805		382	PREDICTED: lipoyl synthase 2, mitochondr	0.997	0.871	0.8	1e-147
255553855		348	lipoic acid synthetase, putative [Ricinu	0.949	0.910	0.830	1e-146
122216661		376	RecName: Full=Lipoyl synthase 2, mitocho	1.0	0.888	0.797	1e-144
122216660		376	RecName: Full=Lipoyl synthase 1, mitocho	1.0	0.888	0.797	1e-144

>gi\|118489021\|gb\|ABK96318.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/355 (81%), Positives = 304/355 (85%), Gaps = 21/355 (5%)

Query: 1   MRSRFTLALARTLTSRT-----RPFSSSAQTPPTEPPTKFPQTLAGLRARLASESPALSD 55
           M+SRFT    RTL S T     R FSSS     T+ P +F QTLAGLRARLA ESP LSD
Sbjct: 1   MQSRFTSLATRTLKSTTTKAKNRTFSSSTVESSTKQPPQFSQTLAGLRARLAVESPTLSD 60

Query: 56  FIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115
           FI LQSN++YSVEVGTKKKPLPKPKWM+E+IPGG+KYV IKKKLRELKLHTVCEEAKCPN
Sbjct: 61  FIHLQSNNTYSVEVGTKKKPLPKPKWMREAIPGGEKYVHIKKKLRELKLHTVCEEAKCPN 120

Query: 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLD 175
           LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR PPPPDP+EPTNVAEAIASWGLD
Sbjct: 121 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRKPPPPDPNEPTNVAEAIASWGLD 180

Query: 176 YVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-------------VAKSGLNV 222
           YVVITSVDRDDLADQGSGHFA+TV KLK LKPNMLIEAL             VAKSGL+V
Sbjct: 181 YVVITSVDRDDLADQGSGHFAETVHKLKTLKPNMLIEALVPDFRGDRGCVEKVAKSGLDV 240

Query: 223 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 282
           FAHNIETVEELQS+VRDHRANFKQSLDVLMMAK+Y P GTLTKTSIMLGCGE P+QVV T
Sbjct: 241 FAHNIETVEELQSSVRDHRANFKQSLDVLMMAKEYAPPGTLTKTSIMLGCGEAPEQVVKT 300

Query: 283 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM---VSGSGP 334
           MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP+AFE+YR LGMEM      SGP
Sbjct: 301 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPDAFEKYRTLGMEMGFRYVASGP 355

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224081274\|ref\|XP_002306361.1\| predicted protein [Populus trichocarpa] gi\|308191438\|sp\|B9H5L9.1\|LIAS_POPTR RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi\|222855810\|gb\|EEE93357.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|388520169\|gb\|AFK48146.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388511141\|gb\|AFK43632.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|308191435\|sp\|B7FM45.1\|LIAS_MEDTR RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi\|217074936\|gb\|ACJ85828.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356549944\|ref\|XP_003543350.1\| PREDICTED: lipoyl synthase 2, mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi\|356543805\|ref\|XP_003540350.1\| PREDICTED: lipoyl synthase 2, mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi\|255553855\|ref\|XP_002517968.1\| lipoic acid synthetase, putative [Ricinus communis] gi\|308191439\|sp\|B9RW49.1\|LIAS_RICCO RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi\|223542950\|gb\|EEF44486.1\| lipoic acid synthetase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|122216661\|sp\|Q3LSN5.1\|LIAS2_PEA RecName: Full=Lipoyl synthase 2, mitochondrial; AltName: Full=Lipoate synthase 2; Short=LS 2; Short=Lip-syn 2; AltName: Full=Lipoic acid synthase 2; Flags: Precursor gi\|75860376\|gb\|ABA29155.1\| putative lipoic acid synthase [Pisum sativum]	Back alignment and taxonomy information

>gi\|122216660\|sp\|Q3LSN4.1\|LIAS1_PEA RecName: Full=Lipoyl synthase 1, mitochondrial; AltName: Full=Lipoate synthase 1; Short=LS 1; Short=Lip-syn 1; AltName: Full=Lipoic acid synthase 1; Flags: Precursor gi\|75860378\|gb\|ABA29156.1\| putative lipoic acid synthase [Pisum sativum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		334
TAIR\|locus:2051384		374	LIP1 "lipoic acid synthase 1"	0.925	0.826	0.748	1.9e-122
UNIPROTKB\|E2R257		373	LIAS "Lipoyl synthase, mitocho	0.904	0.809	0.501	2.1e-75
ZFIN\|ZDB-GENE-040426-1528		399	lias "lipoic acid synthetase"	0.931	0.779	0.491	2.1e-75
MGI\|MGI:1934604		373	Lias "lipoic acid synthetase"	0.847	0.758	0.522	3.5e-75
UNIPROTKB\|O43766		372	LIAS "Lipoyl synthase, mitocho	0.904	0.811	0.498	5.7e-75
RGD\|1307270		373	Lias "lipoic acid synthetase"	0.871	0.780	0.509	7.3e-75
ASPGD\|ASPL0000071079		413	AN9486 [Emericella nidulans (t	0.757	0.612	0.566	1.5e-74
UNIPROTKB\|I3LGA8		372	LIAS "Lipoyl synthase, mitocho	0.904	0.811	0.495	1.9e-74
UNIPROTKB\|Q5BIP7		372	LIAS "Lipoyl synthase, mitocho	0.757	0.680	0.562	3.1e-74
UNIPROTKB\|F1NEN8		339	LIAS "Uncharacterized protein"	0.865	0.852	0.496	1.7e-73

TAIR\|locus:2051384 LIP1 "lipoic acid synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 247/330 (74%), Positives = 268/330 (81%)

Query:    21 SSSAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTXXXXXXXXX 80
             SSSA TP T   T+ P++L  LRARLA+ESP+L+DFI      +YSVEVGT         
Sbjct:    21 SSSAVTPVTV--TQSPKSLEALRARLANESPSLTDFIH---GDTYSVEVGTKKKPLPKPK 75

Query:    81 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 140
             WMKESIPGG++YVQIKKKLR+LKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT
Sbjct:    76 WMKESIPGGERYVQIKKKLRDLKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT 135

Query:   141 RGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVR 200
             RGCRFCNVKTSR           NVAEAIASWG+DYVVITSVDRDDL DQGSGHFA+TV+
Sbjct:   136 RGCRFCNVKTSRTPPPPDPNEPNNVAEAIASWGVDYVVITSVDRDDLPDQGSGHFAETVQ 195

Query:   201 KLKELKPNMLIEALV-------------AKSGLNVFAHNIETVEELQSAVRDHRANFKQS 247
             +LK LKP MLIEALV             +KSGL+V AHNIETVEELQS VRDHRANFKQS
Sbjct:   196 RLKFLKPEMLIEALVPDFRGDGGCVEKVSKSGLDVLAHNIETVEELQSFVRDHRANFKQS 255

Query:   248 LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 307
             LDVL MAK+Y PAGTLTKTS+MLGCGETPDQVV TMEKVRAAGVDVMTFGQYMRPSKRHM
Sbjct:   256 LDVLRMAKEYAPAGTLTKTSVMLGCGETPDQVVKTMEKVRAAGVDVMTFGQYMRPSKRHM 315

Query:   308 PVSEYITPEAFERYRALGMEM---VSGSGP 334
             PV+EY+TP+AFERYR LGMEM      SGP
Sbjct:   316 PVAEYVTPDAFERYRLLGMEMGFRYVASGP 345

GO:0003824 "catalytic activity" evidence=IEA

GO:0009107 "lipoate biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0016992 "lipoate synthase activity" evidence=IEA;IGI

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA;TAS

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

UNIPROTKB\|E2R257 LIAS "Lipoyl synthase, mitochondrial" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1528 lias "lipoic acid synthetase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1934604 Lias "lipoic acid synthetase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|O43766 LIAS "Lipoyl synthase, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1307270 Lias "lipoic acid synthetase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000071079 AN9486 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LGA8 LIAS "Lipoyl synthase, mitochondrial" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5BIP7 LIAS "Lipoyl synthase, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NEN8 LIAS "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5AQE4	LIPA_EMENI	2, ., 8, ., 1, ., 8	0.5303	0.8473	0.6852	yes	no
B6HFQ1	LIPA_PENCW	2, ., 8, ., 1, ., 8	0.5116	0.9131	0.7331	yes	no
A2XU53	LIAS_ORYSI	2, ., 8, ., 1, ., 8	0.7884	0.8652	0.7565	N/A	no
B9RW49	LIAS_RICCO	2, ., 8, ., 1, ., 8	0.8303	0.9491	0.9109	N/A	no
Q5XIH4	LIAS_RAT	2, ., 8, ., 1, ., 8	0.5414	0.8712	0.7801	yes	no
Q5BIP7	LIAS_BOVIN	2, ., 8, ., 1, ., 8	0.5490	0.8473	0.7607	yes	no
A5CB81	LIAS_VITVI	2, ., 8, ., 1, ., 8	0.8123	0.9191	0.7811	yes	no
B8A031	LIAS_MAIZE	2, ., 8, ., 1, ., 8	0.7562	0.8892	0.7754	N/A	no
B9H5L9	LIAS_POPTR	2, ., 8, ., 1, ., 8	0.8112	1.0	0.8675	yes	no
Q2LYK1	LIAS_DROPS	2, ., 8, ., 1, ., 8	0.5093	0.8862	0.7914	yes	no
Q3LSN4	LIAS1_PEA	2, ., 8, ., 1, ., 8	0.7971	1.0	0.8882	N/A	no
A9NNH7	LIAS_PICSI	2, ., 8, ., 1, ., 8	0.6951	0.9670	0.8367	N/A	no
Q9ZWT1	LIAS_ARATH	2, ., 8, ., 1, ., 8	0.7714	0.9850	0.8796	yes	no
Q99M04	LIAS_MOUSE	2, ., 8, ., 1, ., 8	0.5522	0.8473	0.7587	yes	no
A4RZ86	LIAS_OSTLU	2, ., 8, ., 1, ., 8	0.5830	0.8562	0.7167	yes	no
B7FRU7	LIPA1_PHATC	2, ., 8, ., 1, ., 8	0.5055	0.9431	0.7855	yes	no
Q7XRF1	LIAS_ORYSJ	2, ., 8, ., 1, ., 8	0.7852	0.8652	0.7565	yes	no
C5Y9R0	LIAS_SORBI	2, ., 8, ., 1, ., 8	0.7714	0.8742	0.7564	N/A	no
Q6PHG4	LIAS_DANRE	2, ., 8, ., 1, ., 8	0.5559	0.8413	0.7042	yes	no
Q4WWP1	LIPA_ASPFU	2, ., 8, ., 1, ., 8	0.5273	0.8473	0.6835	yes	no
Q7JQW6	LIAS_DROME	2, ., 8, ., 1, ., 8	0.4883	0.9431	0.8355	yes	no
B4J3F3	LIAS_DROGR	2, ., 8, ., 1, ., 8	0.5186	0.8862	0.8131	N/A	no
C5DGZ5	LIPA_LACTC	2, ., 8, ., 1, ., 8	0.4779	0.9580	0.8625	yes	no
O43766	LIAS_HUMAN	2, ., 8, ., 1, ., 8	0.5157	0.9431	0.8467	yes	no
Q3LSN5	LIAS2_PEA	2, ., 8, ., 1, ., 8	0.7971	1.0	0.8882	N/A	no
Q6GQ48	LIAS_XENLA	2, ., 8, ., 1, ., 8	0.5415	0.9041	0.8118	N/A	no
C3Y3G4	LIAS_BRAFL	2, ., 8, ., 1, ., 8	0.5354	0.8562	0.7606	yes	no
B7FM45	LIAS_MEDTR	2, ., 8, ., 1, ., 8	0.7920	0.9970	0.8809	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.8	0.979
3rd Layer	2.8.1	0.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		334
PLN02428		349	PLN02428, PLN02428, lipoic acid synthase	0.0
PRK05481		289	PRK05481, PRK05481, lipoyl synthase; Provisional	1e-138
COG0320		306	COG0320, LipA, Lipoate synthase [Coenzyme metaboli	1e-130
PTZ00413		398	PTZ00413, PTZ00413, lipoate synthase; Provisional	1e-129
PRK12928		290	PRK12928, PRK12928, lipoyl synthase; Provisional	1e-110
TIGR00510		302	TIGR00510, lipA, lipoate synthase	1e-109
pfam04055		165	pfam04055, Radical_SAM, Radical SAM superfamily	4e-17
smart00729		216	smart00729, Elp3, Elongator protein 3, MiaB family	7e-17
cd01335		204	cd01335, Radical_SAM, Radical SAM superfamily	1e-06
COG1060		370	COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a	3e-04
COG0502		335	COG0502, BioB, Biotin synthase and related enzymes	0.002

>gnl\|CDD\|215236 PLN02428, PLN02428, lipoic acid synthase	Back alignment and domain information

 Score =  567 bits (1463), Expect = 0.0
 Identities = 220/328 (67%), Positives = 253/328 (77%), Gaps = 22/328 (6%)

Query: 23  SAQTPPTEPPTKFPQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWM 82
              T  T P T  PQTLA LRARLASESP+L DF+ L   +        + KPLPKPKW+
Sbjct: 1   VTSTSTTAPQT--PQTLAALRARLASESPSLGDFVSLGPYTLG---SYGRDKPLPKPKWL 55

Query: 83  KESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRG 142
           ++  PGG+KY +IK+KLRELKL+TVCEEA+CPN+GECW+GG TGTATATIMILGDTCTRG
Sbjct: 56  RQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRG 115

Query: 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202
           CRFC VKTSR PPPPDPDEP NVAEAIASWG+DYVV+TSVDRDDL D GSGHFA+TVR+L
Sbjct: 116 CRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRL 175

Query: 203 KELKPNMLIEALV-------------AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLD 249
           K+LKP +L+EALV             A SGL+VFAHNIETVE LQ  VRD RA +KQSLD
Sbjct: 176 KQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLD 235

Query: 250 VLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPV 309
           VL  AK+  P G LTKTSIMLG GET ++VV TME +RAAGVDV+TFGQY+RP+KRH+PV
Sbjct: 236 VLKHAKESKP-GLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPV 294

Query: 310 SEYITPEAFERYRALGMEM---VSGSGP 334
            EY+TPE FE +R  G EM      SGP
Sbjct: 295 KEYVTPEKFEFWREYGEEMGFRYVASGP 322

Length = 349

>gnl\|CDD\|235493 PRK05481, PRK05481, lipoyl synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|237261 PRK12928, PRK12928, lipoyl synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|233002 TIGR00510, lipA, lipoate synthase	Back alignment and domain information

>gnl\|CDD\|217866 pfam04055, Radical_SAM, Radical SAM superfamily	Back alignment and domain information

>gnl\|CDD\|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM	Back alignment and domain information

>gnl\|CDD\|100105 cd01335, Radical_SAM, Radical SAM superfamily	Back alignment and domain information

>gnl\|CDD\|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		334
KOG2672		360	consensus Lipoate synthase [Coenzyme transport and	100.0
COG0320		306	LipA Lipoate synthase [Coenzyme metabolism]	100.0
PTZ00413		398	lipoate synthase; Provisional	100.0
PLN02428		349	lipoic acid synthase	100.0
TIGR00510		302	lipA lipoate synthase. The family shows strong seq	100.0
PRK12928		290	lipoyl synthase; Provisional	100.0
PRK05481		289	lipoyl synthase; Provisional	100.0
COG0621		437	MiaB 2-methylthioadenine synthetase [Translation,	100.0
COG0502		335	BioB Biotin synthase and related enzymes [Coenzyme	99.94
PRK08508		279	biotin synthase; Provisional	99.93
TIGR03700		351	mena_SCO4494 putative menaquinone biosynthesis pro	99.93
PRK05927		350	hypothetical protein; Provisional	99.92
PRK08444		353	hypothetical protein; Provisional	99.92
PRK14332		449	(dimethylallyl)adenosine tRNA methylthiotransferas	99.92
PRK14340		445	(dimethylallyl)adenosine tRNA methylthiotransferas	99.92
PRK14327		509	(dimethylallyl)adenosine tRNA methylthiotransferas	99.92
TIGR03550		322	F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav	99.92
PRK14339		420	(dimethylallyl)adenosine tRNA methylthiotransferas	99.92
PRK15108		345	biotin synthase; Provisional	99.92
PRK14336		418	(dimethylallyl)adenosine tRNA methylthiotransferas	99.91
PRK14337		446	(dimethylallyl)adenosine tRNA methylthiotransferas	99.91
PRK14329		467	(dimethylallyl)adenosine tRNA methylthiotransferas	99.91
PRK14335		455	(dimethylallyl)adenosine tRNA methylthiotransferas	99.9
PRK09240		371	thiH thiamine biosynthesis protein ThiH; Reviewed	99.9
PRK08445		348	hypothetical protein; Provisional	99.9
PLN02389		379	biotin synthase	99.9
PRK05926		370	hypothetical protein; Provisional	99.9
TIGR00423		309	radical SAM domain protein, CofH subfamily. This p	99.9
PRK14330		434	(dimethylallyl)adenosine tRNA methylthiotransferas	99.9
PRK14328		439	(dimethylallyl)adenosine tRNA methylthiotransferas	99.9
TIGR01574		438	miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3	99.9
PRK14331		437	(dimethylallyl)adenosine tRNA methylthiotransferas	99.89
PRK06256		336	biotin synthase; Validated	99.89
PRK14333		448	(dimethylallyl)adenosine tRNA methylthiotransferas	99.89
TIGR01579		414	MiaB-like-C MiaB-like tRNA modifying enzyme. This	99.89
TIGR03699		340	mena_SCO4550 menaquinone biosynthesis protein, SCO	99.89
PRK14862		440	rimO ribosomal protein S12 methylthiotransferase;	99.89
PRK07094		323	biotin synthase; Provisional	99.89
PRK14326		502	(dimethylallyl)adenosine tRNA methylthiotransferas	99.89
TIGR01578		420	MiaB-like-B MiaB-like tRNA modifying enzyme, archa	99.89
PRK14338		459	(dimethylallyl)adenosine tRNA methylthiotransferas	99.88
TIGR01125		430	MiaB-like tRNA modifying enzyme YliG, TIGR01125. T	99.88
TIGR02351		366	thiH thiazole biosynthesis protein ThiH. Members t	99.88
TIGR00089		429	RNA modification enzyme, MiaB family. This subfami	99.87
PRK14325		444	(dimethylallyl)adenosine tRNA methylthiotransferas	99.87
PRK07360		371	FO synthase subunit 2; Reviewed	99.87
PRK06245		336	cofG FO synthase subunit 1; Reviewed	99.87
PRK14334		440	(dimethylallyl)adenosine tRNA methylthiotransferas	99.87
TIGR03551		343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	99.87
PRK09234		843	fbiC FO synthase; Reviewed	99.85
PRK09613		469	thiH thiamine biosynthesis protein ThiH; Reviewed	99.85
PRK09234		843	fbiC FO synthase; Reviewed	99.84
TIGR00433		296	bioB biotin synthetase. Catalyzes the last step of	99.84
PRK06267		350	hypothetical protein; Provisional	99.81
COG1060		370	ThiH Thiamine biosynthesis enzyme ThiH and related	99.81
KOG2900		380	consensus Biotin synthase [Coenzyme transport and	99.76
KOG2492		552	consensus CDK5 activator-binding protein [Signal t	99.75
smart00729		216	Elp3 Elongator protein 3, MiaB family, Radical SAM	99.69
PRK00955		620	hypothetical protein; Provisional	99.67
PRK01254		707	hypothetical protein; Provisional	99.65
cd01335		204	Radical_SAM Radical SAM superfamily. Enzymes of th	99.55
TIGR03471		472	HpnJ hopanoid biosynthesis associated radical SAM	99.55
TIGR02026		497	BchE magnesium-protoporphyrin IX monomethyl ester	99.53
KOG4355		547	consensus Predicted Fe-S oxidoreductase [General f	99.52
PRK08207		488	coproporphyrinogen III oxidase; Provisional	99.52
PRK08599		377	coproporphyrinogen III oxidase; Provisional	99.52
PRK05799		374	coproporphyrinogen III oxidase; Provisional	99.48
PRK05904		353	coproporphyrinogen III oxidase; Provisional	99.46
PRK09249		453	coproporphyrinogen III oxidase; Provisional	99.45
TIGR00538		455	hemN oxygen-independent coproporphyrinogen III oxi	99.45
PRK05660		378	HemN family oxidoreductase; Provisional	99.45
TIGR01212		302	radical SAM protein, TIGR01212 family. This unchar	99.44
PF04055		166	Radical_SAM: Radical SAM superfamily; InterPro: IP	99.44
PRK13347		453	coproporphyrinogen III oxidase; Provisional	99.41
PRK00164		331	moaA molybdenum cofactor biosynthesis protein A; R	99.4
PRK08208		430	coproporphyrinogen III oxidase; Validated	99.39
PRK05628		375	coproporphyrinogen III oxidase; Validated	99.39
TIGR00539		360	hemN_rel putative oxygen-independent coproporphyri	99.39
PRK13361		329	molybdenum cofactor biosynthesis protein A; Provis	99.39
TIGR02666		334	moaA molybdenum cofactor biosynthesis protein A, b	99.36
PRK08446		350	coproporphyrinogen III oxidase; Provisional	99.35
PRK07379		400	coproporphyrinogen III oxidase; Provisional	99.35
PRK09058		449	coproporphyrinogen III oxidase; Provisional	99.34
PLN02951		373	Molybderin biosynthesis protein CNX2	99.34
TIGR02668		302	moaA_archaeal probable molybdenum cofactor biosynt	99.32
PRK08898		394	coproporphyrinogen III oxidase; Provisional	99.3
PRK09057		380	coproporphyrinogen III oxidase; Provisional	99.29
PRK08629		433	coproporphyrinogen III oxidase; Provisional	99.28
PRK06294		370	coproporphyrinogen III oxidase; Provisional	99.26
PRK06582		390	coproporphyrinogen III oxidase; Provisional	99.2
PRK05301		378	pyrroloquinoline quinone biosynthesis protein PqqE	99.18
TIGR01210		313	conserved hypothetical protein TIGR01210. This fam	99.15
COG1032		490	Fe-S oxidoreductase [Energy production and convers	99.12
TIGR01290		442	nifB nitrogenase cofactor biosynthesis protein Nif	99.04
TIGR02493		235	PFLA pyruvate formate-lyase 1-activating enzyme. A	98.97
COG0635		416	HemN Coproporphyrinogen III oxidase and related Fe	98.96
TIGR02109		358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	98.95
TIGR03470		318	HpnH hopanoid biosynthesis associated radical SAM	98.87
TIGR02495		191	NrdG2 anaerobic ribonucleoside-triphosphate reduct	98.86
PRK11145		246	pflA pyruvate formate lyase-activating enzyme 1; P	98.83
TIGR03822		321	AblA_like_2 lysine-2,3-aminomutase-related protein	98.82
COG1242		312	Predicted Fe-S oxidoreductase [General function pr	98.82
COG2896		322	MoaA Molybdenum cofactor biosynthesis enzyme [Coen	98.78
PRK14455		356	ribosomal RNA large subunit methyltransferase N; P	98.71
COG2516		339	Biotin synthase-related enzyme [General function p	98.71
TIGR01211		522	ELP3 histone acetyltransferase, ELP3 family. The S	98.68
PRK14469		343	ribosomal RNA large subunit methyltransferase N; P	98.67
PRK14456		368	ribosomal RNA large subunit methyltransferase N; P	98.64
PRK14463		349	ribosomal RNA large subunit methyltransferase N; P	98.61
TIGR00238		331	KamA family protein. Note that the E. coli homolog	98.57
COG0535		347	Predicted Fe-S oxidoreductases [General function p	98.53
PRK13762		322	tRNA-modifying enzyme; Provisional	98.52
TIGR00048		355	radical SAM enzyme, Cfr family. A Staphylococcus s	98.51
PRK14466		345	ribosomal RNA large subunit methyltransferase N; P	98.51
PRK14460		354	ribosomal RNA large subunit methyltransferase N; P	98.47
PRK14470		336	ribosomal RNA large subunit methyltransferase N; P	98.46
PRK14457		345	ribosomal RNA large subunit methyltransferase N; P	98.46
PRK14468		343	ribosomal RNA large subunit methyltransferase N; P	98.45
TIGR03821		321	AblA_like_1 lysine-2,3-aminomutase-related protein	98.44
TIGR03278		404	methan_mark_10 putative methanogenesis marker prot	98.42
COG0731		296	Fe-S oxidoreductases [Energy production and conver	98.42
PRK14459		373	ribosomal RNA large subunit methyltransferase N; P	98.38
PRK14453		347	chloramphenicol/florfenicol resistance protein; Pr	98.27
COG1031		560	Uncharacterized Fe-S oxidoreductase [Energy produc	98.21
PRK13758		370	anaerobic sulfatase-maturase; Provisional	98.2
TIGR03820		417	lys_2_3_AblA lysine-2,3-aminomutase. This model de	98.16
COG1856		275	Uncharacterized homolog of biotin synthetase [Func	98.11
PRK13745		412	anaerobic sulfatase-maturase; Provisional	98.07
COG4277		404	Predicted DNA-binding protein with the Helix-hairp	98.04
PRK14467		348	ribosomal RNA large subunit methyltransferase N; P	97.95
TIGR02494		295	PFLE_PFLC glycyl-radical enzyme activating protein	97.91
PRK11194		372	ribosomal RNA large subunit methyltransferase N; P	97.91
PRK14464		344	ribosomal RNA large subunit methyltransferase N; P	97.86
COG2100		414	Predicted Fe-S oxidoreductase [General function pr	97.82
cd03174		265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	97.77
PRK14454		342	ribosomal RNA large subunit methyltransferase N; P	97.76
PRK14462		356	ribosomal RNA large subunit methyltransferase N; P	97.69
COG1180		260	PflA Pyruvate-formate lyase-activating enzyme [Pos	97.55
TIGR03365		238	Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn	97.51
COG2108		353	Uncharacterized conserved protein related to pyruv	97.51
PRK14465		342	ribosomal RNA large subunit methyltransferase N; P	97.49
PF13353		139	Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A	97.32
COG1533		297	SplB DNA repair photolyase [DNA replication, recom	97.31
PRK10076		213	pyruvate formate lyase II activase; Provisional	97.23
PF13394		119	Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B	97.17
COG0641		378	AslB Arylsulfatase regulator (Fe-S oxidoreductase)	97.06
COG1509		369	KamA Lysine 2,3-aminomutase [Amino acid transport	97.0
COG1243		515	ELP3 Histone acetyltransferase [Transcription / Ch	96.92
COG1313		335	PflX Uncharacterized Fe-S protein PflX, homolog of	96.9
TIGR02491		154	NrdG anaerobic ribonucleoside-triphosphate reducta	96.81
PRK11121		154	nrdG anaerobic ribonucleotide reductase-activating	96.77
PRK14461		371	ribosomal RNA large subunit methyltransferase N; P	96.71
COG1244		358	Predicted Fe-S oxidoreductase [General function pr	96.68
PRK05692		287	hydroxymethylglutaryl-CoA lyase; Provisional	96.48
TIGR02826		147	RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph	96.42
KOG2876		323	consensus Molybdenum cofactor biosynthesis pathway	96.4
cd07948		262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	96.2
cd07939		259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	96.02
PLN02746		347	hydroxymethylglutaryl-CoA lyase	96.0
COG1625		414	Fe-S oxidoreductase, related to NifB/MoaA family [	95.99
cd07940		268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	95.9
cd07943		263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	95.66
TIGR02660		365	nifV_homocitr homocitrate synthase NifV. This fami	95.64
PRK11858		378	aksA trans-homoaconitate synthase; Reviewed	95.53
PF00682		237	HMGL-like: HMGL-like of this family is not conserv	95.5
cd07938		274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	95.38
COG0602		212	NrdG Organic radical activating enzymes [Posttrans	95.37
cd07944		266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	95.29
COG0820		349	Predicted Fe-S-cluster redox enzyme [General funct	95.16
TIGR02090		363	LEU1_arch isopropylmalate/citramalate/homocitrate	95.1
COG5014		228	Predicted Fe-S oxidoreductase [General function pr	94.84
PRK08195		337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	94.56
TIGR03217		333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	94.26
PRK09389		488	(R)-citramalate synthase; Provisional	93.22
PRK00915		513	2-isopropylmalate synthase; Validated	92.71
cd07945		280	DRE_TIM_CMS Leptospira interrogans citramalate syn	91.93
PF05853		272	DUF849: Prokaryotic protein of unknown function (D	91.81
cd07937		275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	91.66
TIGR00973		494	leuA_bact 2-isopropylmalate synthase, bacterial ty	90.9
PRK12330		499	oxaloacetate decarboxylase; Provisional	89.91
COG0119		409	LeuA Isopropylmalate/homocitrate/citramalate synth	89.5
cd07941		273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	89.48
PRK12331		448	oxaloacetate decarboxylase; Provisional	88.98
TIGR01108		582	oadA oxaloacetate decarboxylase alpha subunit. Thi	88.59
PRK14040		593	oxaloacetate decarboxylase; Provisional	87.01
PF06180		262	CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388	86.95
PRK09282		592	pyruvate carboxylase subunit B; Validated	86.9
PLN03228		503	methylthioalkylmalate synthase; Provisional	86.57
PF04481		242	DUF561: Protein of unknown function (DUF561); Inte	86.04
PRK14041		467	oxaloacetate decarboxylase; Provisional	85.83
PRK12344		524	putative alpha-isopropylmalate/homocitrate synthas	85.58
TIGR03279		433	cyano_FeS_chp putative FeS-containing Cyanobacteri	85.04
PRK12581		468	oxaloacetate decarboxylase; Provisional	84.26
COG4822		265	CbiK Cobalamin biosynthesis protein CbiK, Co2+ che	83.69
PRK14042		596	pyruvate carboxylase subunit B; Provisional	83.12
cd00950		284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	82.84
cd04823		320	ALAD_PBGS_aspartate_rich Porphobilinogen synthase	82.47
cd00452		190	KDPG_aldolase KDPG and KHG aldolase. This family b	82.05
PLN02321		632	2-isopropylmalate synthase	81.96
PRK08883		220	ribulose-phosphate 3-epimerase; Provisional	81.26
cd00377		243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	80.82
COG0113		330	HemB Delta-aminolevulinic acid dehydratase [Coenzy	80.6
cd00954		288	NAL N-Acetylneuraminic acid aldolase, also called	80.22

>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=8.7e-103  Score=731.20  Aligned_cols=291  Identities=60%  Similarity=1.047  Sum_probs=278.5

Q ss_pred             HHHHhhhCCCCccccccCCCC--CCccccccCC----CCCCCCCCceeecCCCCcchHHHHHHHhhcCchhhhhccCCCC
Q 019890           42 LRARLASESPALSDFIDLQSN--SSYSVEVGTK----KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN  115 (334)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~r~P~wlk~~~p~~~~~~~~~~~l~~~~L~Tvceea~cpn  115 (334)
                      |++.|+ +||+|+||++++.+  .++..+.+.+    ..++|+|+|||.++|.|+||++||+.|++++||||||||+|||
T Consensus        19 ~~~~l~-~gPs~~DFv~~d~~~~~~~~~e~~~~~~~~~~~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPN   97 (360)
T KOG2672|consen   19 FKELLA-KGPSFADFVSGDKPLRADWDFEKGRKKREGEERLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPN   97 (360)
T ss_pred             hhhhhc-cCCchhhhhcCCcccccccchhhchhhhhccccccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCc
Confidence            778877 99999999999875  2344433333    3578999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCcceEEEEeecCCCCCCCCCcccCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHH
Q 019890          116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF  195 (334)
Q Consensus       116 i~ec~~~~~~~~~Tatfm~igdgCtr~C~FC~V~~~r~p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~f  195 (334)
                      ||||||||+++++|||||+|||+|||+|+||+|+++|.|+|+||.||++.|+||+.||+.||||||||||||+|+|+.||
T Consensus        98 iGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~Hi  177 (360)
T KOG2672|consen   98 IGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHI  177 (360)
T ss_pred             hhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCceeee-------------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcc
Q 019890          196 AQTVRKLKELKPNMLIEAL-------------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT  262 (334)
Q Consensus       196 a~lIr~Ik~~~P~i~vE~L-------------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl  262 (334)
                      |++|++||+++|++.||+|             ++.+|+|||+||+|||++|.+.||||+++|+|||++|+++|+..|+ +
T Consensus       178 AkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~-l  256 (360)
T KOG2672|consen  178 AKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPG-L  256 (360)
T ss_pred             HHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCC-c
Confidence            9999999999999999998             8899999999999999999999999999999999999999999998 9


Q ss_pred             eEeeceEEecCCCHHHHHHHHHHHHHcCCcEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh---hcCCCC
Q 019890          263 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM---VSGSGP  334 (334)
Q Consensus       263 ~tkTgiMVGlGETdEE~~etl~~Lre~gvd~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~---~~~~~~  334 (334)
                      +++|+||+|+|||+||+.++|++||+++||++|+||||||+++|++|.+||+|++|++|++++++|   |+||||
T Consensus       257 itktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y~Asgp  331 (360)
T KOG2672|consen  257 ITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGP  331 (360)
T ss_pred             eehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhhhcceEEeccCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999   999998

>COG0320 LipA Lipoate synthase [Coenzyme metabolism]	Back alignment and domain information

>PTZ00413 lipoate synthase; Provisional	Back alignment and domain information

>PLN02428 lipoic acid synthase	Back alignment and domain information

>TIGR00510 lipA lipoate synthase	Back alignment and domain information

>PRK12928 lipoyl synthase; Provisional	Back alignment and domain information

>PRK05481 lipoyl synthase; Provisional	Back alignment and domain information

>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]	Back alignment and domain information

>PRK08508 biotin synthase; Provisional	Back alignment and domain information

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family	Back alignment and domain information

>PRK05927 hypothetical protein; Provisional	Back alignment and domain information

>PRK08444 hypothetical protein; Provisional	Back alignment and domain information

>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit	Back alignment and domain information

>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK15108 biotin synthase; Provisional	Back alignment and domain information

>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed	Back alignment and domain information

>PRK08445 hypothetical protein; Provisional	Back alignment and domain information

>PLN02389 biotin synthase	Back alignment and domain information

>PRK05926 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00423 radical SAM domain protein, CofH subfamily	Back alignment and domain information

>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB	Back alignment and domain information

>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK06256 biotin synthase; Validated	Back alignment and domain information

>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme	Back alignment and domain information

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family	Back alignment and domain information

>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional	Back alignment and domain information

>PRK07094 biotin synthase; Provisional	Back alignment and domain information

>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type	Back alignment and domain information

>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125	Back alignment and domain information

>TIGR02351 thiH thiazole biosynthesis protein ThiH	Back alignment and domain information

>TIGR00089 RNA modification enzyme, MiaB family	Back alignment and domain information

>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>PRK07360 FO synthase subunit 2; Reviewed	Back alignment and domain information

>PRK06245 cofG FO synthase subunit 1; Reviewed	Back alignment and domain information

>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	Back alignment and domain information

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit	Back alignment and domain information

>PRK09234 fbiC FO synthase; Reviewed	Back alignment and domain information

>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed	Back alignment and domain information

>PRK09234 fbiC FO synthase; Reviewed	Back alignment and domain information

>TIGR00433 bioB biotin synthetase	Back alignment and domain information

>PRK06267 hypothetical protein; Provisional	Back alignment and domain information

>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]	Back alignment and domain information

>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]	Back alignment and domain information

>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]	Back alignment and domain information

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM	Back alignment and domain information

>PRK00955 hypothetical protein; Provisional	Back alignment and domain information

>PRK01254 hypothetical protein; Provisional	Back alignment and domain information

>cd01335 Radical_SAM Radical SAM superfamily	Back alignment and domain information

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ	Back alignment and domain information

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase	Back alignment and domain information

>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>PRK08207 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK08599 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK05799 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK05904 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK09249 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase	Back alignment and domain information

>PRK05660 HemN family oxidoreductase; Provisional	Back alignment and domain information

>TIGR01212 radical SAM protein, TIGR01212 family	Back alignment and domain information

>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation	Back alignment and domain information

>PRK13347 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed	Back alignment and domain information

>PRK08208 coproporphyrinogen III oxidase; Validated	Back alignment and domain information

>PRK05628 coproporphyrinogen III oxidase; Validated	Back alignment and domain information

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase	Back alignment and domain information

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional	Back alignment and domain information

>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial	Back alignment and domain information

>PRK08446 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK07379 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK09058 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PLN02951 Molybderin biosynthesis protein CNX2	Back alignment and domain information

>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal	Back alignment and domain information

>PRK08898 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK09057 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK08629 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK06294 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK06582 coproporphyrinogen III oxidase; Provisional	Back alignment and domain information

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional	Back alignment and domain information

>TIGR01210 conserved hypothetical protein TIGR01210	Back alignment and domain information

>COG1032 Fe-S oxidoreductase [Energy production and conversion]	Back alignment and domain information

>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB	Back alignment and domain information

>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme	Back alignment and domain information

>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]	Back alignment and domain information

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E	Back alignment and domain information

>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH	Back alignment and domain information

>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein	Back alignment and domain information

>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional	Back alignment and domain information

>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein	Back alignment and domain information

>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]	Back alignment and domain information

>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>COG2516 Biotin synthase-related enzyme [General function prediction only]	Back alignment and domain information

>TIGR01211 ELP3 histone acetyltransferase, ELP3 family	Back alignment and domain information

>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>TIGR00238 KamA family protein	Back alignment and domain information

>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]	Back alignment and domain information

>PRK13762 tRNA-modifying enzyme; Provisional	Back alignment and domain information

>TIGR00048 radical SAM enzyme, Cfr family	Back alignment and domain information

>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein	Back alignment and domain information

>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10	Back alignment and domain information

>COG0731 Fe-S oxidoreductases [Energy production and conversion]	Back alignment and domain information

>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional	Back alignment and domain information

>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]	Back alignment and domain information

>PRK13758 anaerobic sulfatase-maturase; Provisional	Back alignment and domain information

>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase	Back alignment and domain information

>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]	Back alignment and domain information

>PRK13745 anaerobic sulfatase-maturase; Provisional	Back alignment and domain information

>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]	Back alignment and domain information

>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family	Back alignment and domain information

>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily	Back alignment and domain information

>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	Back alignment and domain information

>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]	Back alignment and domain information

>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A	Back alignment and domain information

>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK10076 pyruvate formate lyase II activase; Provisional	Back alignment and domain information

>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A	Back alignment and domain information

>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]	Back alignment and domain information

>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]	Back alignment and domain information

>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]	Back alignment and domain information

>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein	Back alignment and domain information

>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional	Back alignment and domain information

>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional	Back alignment and domain information

>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional	Back alignment and domain information

>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein	Back alignment and domain information

>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]	Back alignment and domain information

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>PLN02746 hydroxymethylglutaryl-CoA lyase	Back alignment and domain information

>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]	Back alignment and domain information

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain	Back alignment and domain information

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>TIGR02660 nifV_homocitr homocitrate synthase NifV	Back alignment and domain information

>PRK11858 aksA trans-homoaconitate synthase; Reviewed	Back alignment and domain information

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members	Back alignment and domain information

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	Back alignment and domain information

>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]	Back alignment and domain information

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases	Back alignment and domain information

>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]	Back alignment and domain information

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	Back alignment and domain information

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase	Back alignment and domain information

>PRK09389 (R)-citramalate synthase; Provisional	Back alignment and domain information

>PRK00915 2-isopropylmalate synthase; Validated	Back alignment and domain information

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function	Back alignment and domain information

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain	Back alignment and domain information

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type	Back alignment and domain information

>PRK12330 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	Back alignment and domain information

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PRK12331 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit	Back alignment and domain information

>PRK14040 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]	Back alignment and domain information

>PRK09282 pyruvate carboxylase subunit B; Validated	Back alignment and domain information

>PLN03228 methylthioalkylmalate synthase; Provisional	Back alignment and domain information

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae	Back alignment and domain information

>PRK14041 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	Back alignment and domain information

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase	Back alignment and domain information

>PRK12581 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]	Back alignment and domain information

>PRK14042 pyruvate carboxylase subunit B; Provisional	Back alignment and domain information

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis	Back alignment and domain information

>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll	Back alignment and domain information

>cd00452 KDPG_aldolase KDPG and KHG aldolase	Back alignment and domain information

>PLN02321 2-isopropylmalate synthase	Back alignment and domain information

>PRK08883 ribulose-phosphate 3-epimerase; Provisional	Back alignment and domain information

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	Back alignment and domain information

>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]	Back alignment and domain information

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		334
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.2 bits (137), Expect = 4e-09
 Identities = 49/392 (12%), Positives = 113/392 (28%), Gaps = 139/392 (35%)

Query: 42  LRARLASES--PAL--SDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKK 97
           L + + +E   P++    +I+ Q +  Y+      K  + + +           Y+++++
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQ----------PYLKLRQ 142

Query: 98  KLRELK------LH------------TVCEEAK---CPNLGECW-SGGETGTATATIMIL 135
            L EL+      +              VC   K     +    W +     +    + +L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 136 GDTCTR-GCRFCNVKTSRAPPPPDPDEPTNVAEA-----IASWG-------LDYV----- 177
                +    +     SR+    +     +  +A     + S         L  V     
Sbjct: 203 QKLLYQIDPNWT----SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 178 ----------VITSVDR---DDLADQGSGH------------------FAQTVR-KLKEL 205
                     ++T+  +   D L+   + H                    + +  + ++L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 206 KP-----NMLIEALVAKS--------------GLNVFAHNIE-TVEELQSAVRDHRANFK 245
                  N    +++A+S                +     IE ++  L+ A  ++R  F 
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFD 376

Query: 246 QSLDVLMMAKD-YVPAGTLTKTSIMLGCG---ETPDQVVSTMEKVRAAGVDVMTF----- 296
           + L V       ++P   L+    ++           VV+ + K                
Sbjct: 377 R-LSVFP--PSAHIPTILLS----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 297 GQYMRPSKRHMP---------VSEYITPEAFE 319
             Y+   K  +          V  Y  P+ F+
Sbjct: 430 SIYLE-LKVKLENEYALHRSIVDHYNIPKTFD 460

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		334
2qgq_A		304	Protein TM_1862; alpha-beta protein, structural ge	99.91
3t7v_A		350	Methylornithine synthase PYLB; TIM-barrel fold, mu	99.89
3iix_A		348	Biotin synthetase, putative; adoMet radical, SAM r	99.85
1r30_A		369	Biotin synthase; SAM radical protein, TIM barrel,	99.84
1olt_A		457	Oxygen-independent coproporphyrinogen III oxidase;	99.62
1tv8_A		340	MOAA, molybdenum cofactor biosynthesis protein A;	99.49
3c8f_A		245	Pyruvate formate-lyase 1-activating enzyme; adoMet	99.4
2yx0_A		342	Radical SAM enzyme; predicted tRNA modification en	99.26
2z2u_A		311	UPF0026 protein MJ0257; metal binding protein; 2.4	99.09
3rfa_A		404	Ribosomal RNA large subunit methyltransferase N; r	98.67
2a5h_A		416	L-lysine 2,3-aminomutase; radical SAM, four-iron-f	98.62
3can_A		182	Pyruvate-formate lyase-activating enzyme; structur	97.67
2cw6_A		298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	96.99
4fhd_A		368	Spore photoproduct lyase; partial TIM-barrel, DNA	96.69
1ydn_A		295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	96.56
1ydo_A		307	HMG-COA lyase; TIM-barrel protein, structural geno	96.22
2ftp_A		302	Hydroxymethylglutaryl-COA lyase; structural genomi	96.16
3ewb_X		293	2-isopropylmalate synthase; LEUA, structural genom	95.16
3eeg_A		325	2-isopropylmalate synthase; 11106D, beta barrel, P	94.37
3ivs_A		423	Homocitrate synthase, mitochondrial; TIM barrel, m	94.05
3ble_A		337	Citramalate synthase from leptospira interrogans;	93.78
3rmj_A		370	2-isopropylmalate synthase; LEUA, truncation, neis	93.29
1nvm_A		345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	92.43
2nx9_A		464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	92.3
2ztj_A		382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	91.43
1rqb_A		539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	90.88
4e38_A		232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	83.55
3no5_A		275	Uncharacterized protein; PFAM DUF849 domain contai	83.24
3e96_A		316	Dihydrodipicolinate synthase; structural genomics,	81.7
3chv_A		284	Prokaryotic domain of unknown function (DUF849) W	81.16
3dxi_A		320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	81.05

>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}	Back alignment and structure

Probab=99.91  E-value=6.7e-24  Score=201.31  Aligned_cols=185  Identities=17%  Similarity=0.325  Sum_probs=134.7

Q ss_pred             eEEEEeecCCCCCCCCCcccCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchH-----HHHHHHHHHH
Q 019890          129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS-----GHFAQTVRKL  202 (334)
Q Consensus       129 Tatfm~igdgCtr~C~FC~V~~~r~p-~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga-----~~fa~lIr~I  202 (334)
                      +.+|+.+++||+.+|+||.++..+++ ..++++++.++++.+.+.|+++|+|+|++.   ..+|.     ..|.++++.|
T Consensus         4 ~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~---~~yG~~~~~~~~l~~Ll~~l   80 (304)
T 2qgq_A            4 PYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDT---TSYGIDLYRKQALPDLLRRL   80 (304)
T ss_dssp             SEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTG---GGTTHHHHSSCCHHHHHHHH
T ss_pred             EEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcc---cccCCCCCcHHHHHHHHHHH
Confidence            78999999999999999999987653 467899999999999999999999999763   23332     4689999999


Q ss_pred             HhhCCCC-ceeee--------------ecccc--ccccccchhh-HHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceE
Q 019890          203 KELKPNM-LIEAL--------------VAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT  264 (334)
Q Consensus       203 k~~~P~i-~vE~L--------------l~~ag--~dv~~HnlET-v~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~t  264 (334)
                      ++. +++ .+.+.              ++++|  .+.+...+|+ .+++++.|+ |++++++.++.++.+++.+|+ +.+
T Consensus        81 ~~~-~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~-r~~t~e~~~~~i~~l~~~~~g-i~i  157 (304)
T 2qgq_A           81 NSL-NGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMG-RTKSSEELKKMLSSIRERFPD-AVL  157 (304)
T ss_dssp             HTS-SSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTT-CCSCHHHHHHHHHHHHHHCTT-CEE
T ss_pred             Hhc-CCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCC-CEE
Confidence            875 443 22221              66677  6777778897 599999999 899999999999999998776 999


Q ss_pred             eeceEEec-CCCHHHHHHHHHHHHHcCCcEEeeccCc-CCCCCCCcccccCCHHHHH
Q 019890          265 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITPEAFE  319 (334)
Q Consensus       265 kTgiMVGl-GETdEE~~etl~~Lre~gvd~vtigqYl-rP~~~h~~v~~yv~P~~f~  319 (334)
                      .+++|+|| |||+||+.++++++++++++.+++++|+ +|..........+++++..
T Consensus       158 ~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~  214 (304)
T 2qgq_A          158 RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAK  214 (304)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHH
Confidence            99999999 9999999999999999999999999997 6776655555677776533

PyMOL of 2qgq

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}	Back alignment and structure

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*	Back alignment and structure

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1	Back alignment and structure

>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2	Back alignment and structure

>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*	Back alignment and structure

>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*	Back alignment and structure

>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}	Back alignment and structure

>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}	Back alignment and structure

>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*	Back alignment and structure

>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}	Back alignment and structure

>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*	Back alignment and structure

>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*	Back alignment and structure

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}	Back alignment and structure

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}	Back alignment and structure

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}	Back alignment and structure

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}	Back alignment and structure

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*	Back alignment and structure

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*	Back alignment and structure

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}	Back alignment and structure

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5	Back alignment and structure

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}	Back alignment and structure

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*	Back alignment and structure

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*	Back alignment and structure

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}	Back alignment and structure

>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}	Back alignment and structure

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0	Back alignment and structure

>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A	Back alignment and structure

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		334
d1r30a_		312	c.1.28.1 (A:) Biotin synthase {Escherichia coli [T	7e-11

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

 Score = 60.0 bits (144), Expect = 7e-11
 Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 31/259 (11%)

Query: 78  KPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGD 137
           +P+W    +           +L E  L  +  EA+   +            +  + I   
Sbjct: 1   RPRWTLSQV----------TELFEKPLLDLLFEAQ--QVHRQHFDPRQVQVSTLLSIKTG 48

Query: 138 TCTRGCRFCNVKTS-----RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS 192
            C   C++C   +       A    + ++    A    + G     + +    +  ++  
Sbjct: 49  ACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGA-AWKNPHERDM 107

Query: 193 GHFAQTVRKLKELKPNMLIEALVAK---------SGLNVFAHNIETVEELQSAVRDHRAN 243
            +  Q V+ +K +     +               +GL+ + HN++T  E    +      
Sbjct: 108 PYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNII-TTRT 166

Query: 244 FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 303
           +++ LD L   +D   AG    +  ++G GET       + ++        +    M   
Sbjct: 167 YQERLDTLEKVRD---AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVK 223

Query: 304 KRHMPVSEYITPEAFERYR 322
            +  P+++    +AF+  R
Sbjct: 224 VKGTPLADNDDVDAFDFIR 242

PyMOL of d1r30a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		334
d1r30a_		312	Biotin synthase {Escherichia coli [TaxId: 562]}	99.89
d1olta_		441	Oxygen-independent coproporphyrinogen III oxidase	99.44
d1tv8a_		327	Molybdenum cofactor biosynthesis protein A MoaA {S	98.9

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.9e-22  Score=185.18  Aligned_cols=190  Identities=15%  Similarity=0.249  Sum_probs=149.3

Q ss_pred             eecCCCCCCCCCcccCCCCC-----CCCCCchhHHHHHHHHHHCCCcEEEEeeecCCCCCCchHHHHHHHHHHHHhhCCC
Q 019890          134 ILGDTCTRGCRFCNVKTSRA-----PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN  208 (334)
Q Consensus       134 ~igdgCtr~C~FC~V~~~r~-----p~~ld~~Ep~~~A~av~~~GlkeVVLTSv~rdDl~d~Ga~~fa~lIr~Ik~~~P~  208 (334)
                      +.+++|+.+|+||+++....     ...++++++.++++.+.+.|+++++++++... ..+.....+.++++.+++..+.
T Consensus        45 ~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~G~~~~~~~~g~~~-~~~~~~~~~~~~i~~~~~~~~~  123 (312)
T d1r30a_          45 IKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKN-PHERDMPYLEQMVQGVKAMGLE  123 (312)
T ss_dssp             EECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCSS-CCTTTHHHHHHHHHHHHHTTSE
T ss_pred             eeCCCCCCcCCcCCCCccCCCCCccccccchHHHHHHHHHHHHcCCEEEEEccCCCC-CchhhHHHHHHHHHhcccccce
Confidence            45999999999999875321     13468999999999999999999999887532 2234577889999998876554


Q ss_pred             Cceeee---------eccccccccccchhhHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCcceEeeceEEecCCCHHHH
Q 019890          209 MLIEAL---------VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQV  279 (334)
Q Consensus       209 i~vE~L---------l~~ag~dv~~HnlETv~~l~~~Vr~r~~tye~sL~vL~~ak~~~p~Gl~tkTgiMVGlGETdEE~  279 (334)
                      +.+.+.         ++++|++.+.+++||.+++++.+. .+.++++++++++.+++.   |+.+++++|+|+|||.+|+
T Consensus       124 ~~~~~~~l~~e~l~~lk~aG~~~i~~~iEs~~~~~~~~~-~~~~~~~~~~~~~~a~~~---Gi~~~~~~i~G~~et~~d~  199 (312)
T d1r30a_         124 ACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNII-TTRTYQERLDTLEKVRDA---GIKVCSGGIVGLGETVKDR  199 (312)
T ss_dssp             EEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHHHHC-CSSCHHHHHHHHHHHHHH---HCEEECCEEECSSCCHHHH
T ss_pred             eeeccccchHHHHHHhhcccceeEecccchhhhhhccCC-CCCCHHHHHHHHHHHHHh---ccceecceEecCcCcHHHH
Confidence            433332         899999999999999988999998 689999999999999998   8999999999999999999


Q ss_pred             HHHHHHHHHcCC--cEEeeccCcCCCCCCCcccccCCHHHHHHHHHHHHHh
Q 019890          280 VSTMEKVRAAGV--DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM  328 (334)
Q Consensus       280 ~etl~~Lre~gv--d~vtigqYlrP~~~h~~v~~yv~P~~f~~~~~~a~~~  328 (334)
                      ++++..|++++.  +.+.++.|...-...+.-..-++++++..+-.+++-+
T Consensus       200 ~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e~l~~iA~~Rl~  250 (312)
T d1r30a_         200 AGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIM  250 (312)
T ss_dssp             HHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCeeeeccccCCCCcccccccCCCHHHHHHHHHHHHHh
Confidence            999999998866  4777776653322334445556776665555454433

PyMOL of d1r30a_

>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure