Citrus Sinensis ID: 019892

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MTFINQHSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPVQ
Secondary Structure (PSIPRED)
cccccccEEEEEEEEcccEEEEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccccEEEEEccEEEEEEEEEcccccccccEEEEcccccccccccccccccccEEcccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccccccEEEEEEEcccccEEEEEEEEccccccccccccccEEEEcccccEEEcccEEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MTFINQHSLLQYAQRDDHVMTIILSAIYttgwvgmgfskdgmmagSSAMVGwfnkkgqprikqyylqgtrssqvihdkgelpltnvppvvaIHGAMIYMAFQLKFENHLRQQPIilafgsrypkhfhlthhvdkrtimfdfsggssSVLYVSSrekknhgalgmigwgiilpvgaiipryfkhkdplWYYLHAIIQLVGFIFGLATVLLGIQLYNklnvknanisaHRGIGIFILVLSILQILAFFlrpskdskfrRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWmkkrsdkttapptfqmnpvq
Flexible Loop (DISEMBL)
MTFINQHSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQvihdkgelpltNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWmkkrsdkttapptfqmnpvq
Low Complexity Region (SEG)
MTFINQHSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFsggsssvlyvssREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFllavvllavivlETLSWMKKRSDKTTAPPTFQMNPVQ
Disordered region (IsUnstruct)
*****QHSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWM*******************
Disordered Region (DISOPRED)
*T**NQHSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYL**********DKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLS*********************
Disordered Region (DISEMBL)
MTFINQHSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPVQ
Disordered Region (DISPRO)
*TFINQHSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRY***********KRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRS***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFINQHSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q6INU7	590	Putative ferric-chelate r	N/A	no	0.458	0.259	0.25	1e-06
Q6ZNA5	592	Ferric-chelate reductase	no	no	0.389	0.219	0.266	3e-05
Q8MSU3	647	Putative ferric-chelate r	yes	no	0.380	0.196	0.272	0.0001
Q8K385	592	Ferric-chelate reductase	yes	no	0.389	0.219	0.219	0.0007

>sp|Q6INU7|FRRS1_XENLA Putative ferric-chelate reductase 1 OS=Xenopus laevis GN=frrs1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 124 KHFHLTHHVDKRTIMFDFS---GGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRY 180
           +H       +++  + DF    GGS S L +     K HGA+  I W   + +G II R+
Sbjct: 339 RHHRQPLMTNRKYCITDFPEDVGGSRSPLII-----KLHGAMMFIAWMTTVSIGVIIARF 393

Query: 181 FKHKDP--------LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGI 232
           FK   P        +W+ +H  + +      +   +L   +Y     K A    H  +G+
Sbjct: 394 FKPVWPTSSLFGEKIWFQIHRCLMITTVFLTVVAFVLPF-IYRGYFSKRAGYHPH--LGV 450

Query: 233 FILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI 284
            +++L++LQ +    RP   +  R  +NW H   G  A   A   + LG+ +
Sbjct: 451 TVMILTVLQPVLAVFRPPPQTHRRGIFNWTHWATGTAARIIAVAAMFLGMDL 502

Putative ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.
Xenopus laevis (taxid: 8355)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q6ZNA5|FRRS1_HUMAN Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS1 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 24/154 (15%)

Query: 143 GGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKH--------KDPLWYYLHAI 194
           GGS SVL +     K HGAL  + W   + +G ++ R+FK          +  W+ +H +
Sbjct: 362 GGSHSVLLL-----KVHGALMFVAWMTTVSIGVLVARFFKPVWSKAFLLGEAAWFQVHRM 416

Query: 195 IQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRG----IGIFILVLSILQILAFFLRPS 250
           +          TVL  I       +     S H G    +G  ++ L++LQ L    RP 
Sbjct: 417 LMFT------TTVLTCIAFVMPF-IYRGGWSRHAGYHPYLGCIVMTLAVLQPLLAVFRPP 469

Query: 251 KDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI 284
                R+ +NW H   G  A   A   + LG+ +
Sbjct: 470 LHDPRRQMFNWTHWSMGTAARIIAVAAMFLGMDL 503

Ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8MSU3|FRRS1_DROME Putative ferric-chelate reductase 1 homolog OS=Drosophila melanogaster GN=CG8399 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 16/143 (11%)

Query: 159 HGALGMIGWGIILPVGAIIPRYFKHK--------DPLWYYLHAIIQLVGFIFGLAT-VLL 209
           HGA  +  W     +G I  RYFK             W+  H ++ +  +   +A  VL+
Sbjct: 409 HGAFMIAAWIGTTSLGIIFARYFKQTWVGSQSCGTDQWFAWHRLLMVTTWSLTVAAYVLI 468

Query: 210 GIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRL 269
            ++L      K A   AH  IG+  ++L  +Q +    RP  + K R ++NW H   G L
Sbjct: 469 WVEL------KQAVWHAHSIIGLITVILCFIQPIGALFRPGPNDKKRPYFNWGHWLGGNL 522

Query: 270 ALFFASVNIVLGIQIGYAG-NEW 291
           A     V I   +++  A   EW
Sbjct: 523 AHILGIVTIFFSVKLPKAELPEW 545

Putative ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8K385|FRRS1_MOUSE Ferric-chelate reductase 1 OS=Mus musculus GN=FRRS1 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 11/141 (7%)

Query: 152 SSREKKNHGALGMIGWGIILPVGAIIPRYFKH--------KDPLWYYLHAIIQLVGFIFG 203
           SS   K HGAL  + W   + +G ++ R+F+         ++  W+ +H ++ +   +  
Sbjct: 366 SSPLLKAHGALMFVAWMTTVSIGVLVARFFRSVWSKAFFLREAAWFQVHRMLMVATSLLT 425

Query: 204 LATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYH 263
               +L        + +      H  +G  ++ L++LQ L    RP      R+ +NW H
Sbjct: 426 CVAFVLPFVYRGGWSWRAGY---HPYLGCTVMTLAVLQPLLATFRPPLHDPRRQVFNWTH 482

Query: 264 HWFGRLALFFASVNIVLGIQI 284
              G  A   A   + LG+ +
Sbjct: 483 WSVGTAARIIAVAAMFLGMDL 503

Ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
449478195	415	PREDICTED: uncharacterized LOC101206013	0.955	0.768	0.676	1e-128
449433034	376	PREDICTED: uncharacterized protein LOC10	0.955	0.848	0.676	1e-127
359489552	591	PREDICTED: uncharacterized protein LOC10	0.958	0.541	0.658	1e-124
224130542	346	predicted protein [Populus trichocarpa]	0.961	0.927	0.653	1e-124
297745450	392	unnamed protein product [Vitis vinifera]	0.958	0.816	0.658	1e-123
255564711	422	dopamine beta-monooxygenase, putative [R	0.961	0.760	0.651	1e-122
356573227	407	PREDICTED: uncharacterized protein LOC10	0.949	0.778	0.633	1e-112
356506067	407	PREDICTED: uncharacterized protein LOC10	0.955	0.783	0.627	1e-111
356520280	405	PREDICTED: putative ferric-chelate reduc	0.949	0.782	0.611	1e-110
297821054	397	hypothetical protein ARALYDRAFT_349233 [	0.961	0.808	0.583	1e-104

>gi|449478195|ref|XP_004155247.1| PREDICTED: uncharacterized LOC101206013 [Cucumis sativus]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/325 (67%), Positives = 271/325 (83%), Gaps = 6/325 (1%)

Query: 9   LLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQG 68
           +L+Y Q +++VM +I+SA+YTTGWVG+GFS+DGMM GSSAMVGW NKKG  RI QYYLQG
Sbjct: 96  VLRYTQNEENVMNVIVSALYTTGWVGIGFSRDGMMVGSSAMVGWVNKKGHARIHQYYLQG 155

Query: 69  TRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHL 128
            + S+VI DKGELPLTNVP  V +HGA IY+AFQLKF   + QQPI+LAFG+ YP+H HL
Sbjct: 156 RKQSEVIQDKGELPLTNVPSSVVLHGATIYLAFQLKFSATVSQQPILLAFGNAYPRHNHL 215

Query: 129 THHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLW 188
           + H DK  ++FDFS  +++   +  + KKNHG LG+IGWG+ILPVGAIIPRYF+HKDPLW
Sbjct: 216 STHSDKTAVVFDFSAAAAAGGEI-GQTKKNHGVLGIIGWGLILPVGAIIPRYFRHKDPLW 274

Query: 189 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLR 248
           YYLH+ IQ VGF  GL TV+LG QLYNK+   NA++  HRGIGIF+LVLSILQ+LAFFLR
Sbjct: 275 YYLHSAIQFVGFAIGLTTVVLGRQLYNKI---NADVPTHRGIGIFVLVLSILQVLAFFLR 331

Query: 249 PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV 308
           P+K++K R++WNWYHHWFGR+ALFF ++NIVLGIQIG AGNEWK+GYGFLL+++L+AVIV
Sbjct: 332 PNKEAKIRKYWNWYHHWFGRIALFFGALNIVLGIQIGGAGNEWKVGYGFLLSIILIAVIV 391

Query: 309 LETLSWMKKRSDKTTAPPTFQMNPV 333
           LE L+WM KRSDK  A  +FQMNPV
Sbjct: 392 LEALAWM-KRSDK-AAMNSFQMNPV 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433034|ref|XP_004134303.1| PREDICTED: uncharacterized protein LOC101206013 [Cucumis sativus]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/325 (67%), Positives = 271/325 (83%), Gaps = 6/325 (1%)

Query: 9   LLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQG 68
           +L+Y Q +++VM +I+SA+YTTGWVG+GFS+DGMM GSSAMVGW NKKG  RI QYYLQG
Sbjct: 57  VLRYTQNEENVMNVIVSALYTTGWVGIGFSRDGMMVGSSAMVGWVNKKGHARIHQYYLQG 116

Query: 69  TRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHL 128
            + S+VI DKGELPLTNVP  V +HGA IY+AFQLKF   + QQPI+LAFG+ YP+H HL
Sbjct: 117 RKQSEVIQDKGELPLTNVPSSVVLHGATIYLAFQLKFSATVSQQPILLAFGNAYPRHNHL 176

Query: 129 THHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLW 188
           + H DK  ++FDFS  +++   +  + KKNHG LG+IGWG+ILPVGAIIPRYF+HKDPLW
Sbjct: 177 STHSDKTAVVFDFSAAAAAGGEI-GQTKKNHGVLGIIGWGLILPVGAIIPRYFRHKDPLW 235

Query: 189 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLR 248
           YYLH+ IQ VGF  GL TV+LG QLYNK+   NA++  HRGIGIF+LVLSILQ+LAFFLR
Sbjct: 236 YYLHSAIQFVGFAIGLTTVVLGRQLYNKI---NADVPTHRGIGIFVLVLSILQVLAFFLR 292

Query: 249 PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV 308
           P+K++K R++WNWYHHWFGR+ALFF ++NIVLGIQIG AGNEWK+GYGFLL+++L+AVIV
Sbjct: 293 PNKEAKIRKYWNWYHHWFGRIALFFGALNIVLGIQIGGAGNEWKVGYGFLLSIILIAVIV 352

Query: 309 LETLSWMKKRSDKTTAPPTFQMNPV 333
           LE L+WM KRSDK  A  +FQMNPV
Sbjct: 353 LEALAWM-KRSDK-AAMNSFQMNPV 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489552|ref|XP_002278384.2| PREDICTED: uncharacterized protein LOC100258436 [Vitis vinifera]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/325 (65%), Positives = 260/325 (80%), Gaps = 5/325 (1%)

Query: 10  LQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGT 69
           ++Y Q  D+V+TIILSA+YTTGWVG+GFS+DGMM GSSA+VGWFNK+G  RIKQYYLQGT
Sbjct: 270 VRYTQNKDNVLTIILSAVYTTGWVGIGFSRDGMMVGSSAIVGWFNKQGHARIKQYYLQGT 329

Query: 70  RSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLT 129
           +++QVI DKGELPLT +P  VA+HGA +YMAFQ+K E+ L  QPI+LAFGS YP H HLT
Sbjct: 330 KTTQVIPDKGELPLTKIPSAVALHGATMYMAFQIKPEDRLTHQPILLAFGSGYPVHNHLT 389

Query: 130 HHVDKRTIMFDFSGGSSSVLYVSSRE-KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLW 188
           HH DK TI+FDFS GS S       E KKNHG LG++GWG+ LP GAI+ RYF+HKDPLW
Sbjct: 390 HHDDKTTILFDFSAGSVSTGSNGVVELKKNHGILGIVGWGLFLPCGAIVARYFRHKDPLW 449

Query: 189 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLR 248
           +YLH  IQ VGFIFGLATV+ G QLYNK+   +A++  HRGIGIF+L LSILQ++AFFLR
Sbjct: 450 FYLHISIQFVGFIFGLATVVAGTQLYNKI---HAHVRTHRGIGIFVLTLSILQVMAFFLR 506

Query: 249 PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV 308
           P+ ++K R++WNWYHHW GR+ALF  ++NIVLGIQIG AGN WKI YGFLL  VL++V  
Sbjct: 507 PNHEAKTRKYWNWYHHWVGRIALFLGALNIVLGIQIGNAGNSWKISYGFLLGAVLISVFA 566

Query: 309 LETLSWMKKRSDKTTAPPTFQMNPV 333
           LE L +M+K S+K    P FQMNPV
Sbjct: 567 LEALLFMRK-SEKLNENPAFQMNPV 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130542|ref|XP_002320865.1| predicted protein [Populus trichocarpa] gi|222861638|gb|EEE99180.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/326 (65%), Positives = 261/326 (80%), Gaps = 5/326 (1%)

Query: 9   LLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQG 68
           LL+Y +++D+V+T ILSA+YT GWV MGFSKDG M GSSAMVGWFN+KGQ RIK+YYLQG
Sbjct: 25  LLRYHKKEDNVVTFILSAVYTIGWVAMGFSKDGRMVGSSAMVGWFNRKGQARIKEYYLQG 84

Query: 69  TRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHL 128
           TR SQVI D GEL LT VPP V I+GAMIY+AFQ KFE  L  QPIILAFG+RYP H+ L
Sbjct: 85  TRPSQVIEDAGELDLTKVPPAVVINGAMIYLAFQAKFEKPLASQPIILAFGTRYPNHYRL 144

Query: 129 THHVDKRTIMFDFSGGSSSVLYVSSRE-KKNHGALGMIGWGIILPVGAIIPRYFKHKDPL 187
           + H DK  I+FDF+ GS+S   ++  + KKNHG LG + WG+ LP GAI+ RY KHK+PL
Sbjct: 145 SSHDDKTAILFDFTAGSASRARINPGQMKKNHGVLGTLAWGLFLPSGAIVARYLKHKEPL 204

Query: 188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFL 247
           WYYLHA IQ +GF+ GLA V+LG QLY+K+   +AN+ +HRGIGIF L LSILQILAFFL
Sbjct: 205 WYYLHAGIQFLGFLLGLANVVLGQQLYSKI---DANVPSHRGIGIFALTLSILQILAFFL 261

Query: 248 RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVI 307
           RP KD+K R++WNWYHHWFGR+ALFF   NIV GI +G AG  WKIG+GFL+ ++L+ VI
Sbjct: 262 RPKKDAKIRKYWNWYHHWFGRIALFFGVFNIVWGIHLGAAGTSWKIGFGFLITMILVTVI 321

Query: 308 VLETLSWMKKRSDKTTAPPTFQMNPV 333
           +LETL+W+ +RS+KTT P TFQMNP+
Sbjct: 322 ILETLTWL-RRSEKTTPPETFQMNPI 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745450|emb|CBI40530.3| unnamed protein product [Vitis vinifera]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/325 (65%), Positives = 260/325 (80%), Gaps = 5/325 (1%)

Query: 10  LQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGT 69
           ++Y Q  D+V+TIILSA+YTTGWVG+GFS+DGMM GSSA+VGWFNK+G  RIKQYYLQGT
Sbjct: 71  VRYTQNKDNVLTIILSAVYTTGWVGIGFSRDGMMVGSSAIVGWFNKQGHARIKQYYLQGT 130

Query: 70  RSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLT 129
           +++QVI DKGELPLT +P  VA+HGA +YMAFQ+K E+ L  QPI+LAFGS YP H HLT
Sbjct: 131 KTTQVIPDKGELPLTKIPSAVALHGATMYMAFQIKPEDRLTHQPILLAFGSGYPVHNHLT 190

Query: 130 HHVDKRTIMFDFSGGSSSVLYVSSRE-KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLW 188
           HH DK TI+FDFS GS S       E KKNHG LG++GWG+ LP GAI+ RYF+HKDPLW
Sbjct: 191 HHDDKTTILFDFSAGSVSTGSNGVVELKKNHGILGIVGWGLFLPCGAIVARYFRHKDPLW 250

Query: 189 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLR 248
           +YLH  IQ VGFIFGLATV+ G QLYNK+   +A++  HRGIGIF+L LSILQ++AFFLR
Sbjct: 251 FYLHISIQFVGFIFGLATVVAGTQLYNKI---HAHVRTHRGIGIFVLTLSILQVMAFFLR 307

Query: 249 PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV 308
           P+ ++K R++WNWYHHW GR+ALF  ++NIVLGIQIG AGN WKI YGFLL  VL++V  
Sbjct: 308 PNHEAKTRKYWNWYHHWVGRIALFLGALNIVLGIQIGNAGNSWKISYGFLLGAVLISVFA 367

Query: 309 LETLSWMKKRSDKTTAPPTFQMNPV 333
           LE L +M+K S+K    P FQMNPV
Sbjct: 368 LEALLFMRK-SEKLNENPAFQMNPV 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564711|ref|XP_002523350.1| dopamine beta-monooxygenase, putative [Ricinus communis] gi|223537438|gb|EEF39066.1| dopamine beta-monooxygenase, putative [Ricinus communis]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/327 (65%), Positives = 260/327 (79%), Gaps = 6/327 (1%)

Query: 9   LLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQG 68
           LL+Y +R+ +++T I+SA+YTTGWVG+GFSKDG+MAGSSAMVGWF K+G  RIKQYYLQG
Sbjct: 101 LLRYHKREGNLVTFIISAVYTTGWVGIGFSKDGLMAGSSAMVGWFTKQGHARIKQYYLQG 160

Query: 69  TRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHL 128
            RSSQVI D GEL +T VPP V +HG MIY+AFQ KFE  L +QPIILAFG+RYP H HL
Sbjct: 161 PRSSQVIADAGELDITKVPPAVVLHGPMIYLAFQAKFEKPLARQPIILAFGTRYPNHHHL 220

Query: 129 THHVDKRTIMFDFSGGSSSVLYVSSRE-KKNHGALGMIGWGIILPVGAIIPRYFKHKDPL 187
           + H DK TI+FDFS GS+S  Y++  + KKNHG LG+  W ++LPVGAI+ RY KHKDPL
Sbjct: 221 SIHDDKTTILFDFSAGSASSGYINPGQMKKNHGILGIFAWSLLLPVGAIVARYLKHKDPL 280

Query: 188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFL 247
           WYYLHA IQ VGF+F LATV+LG QLY K+   NA+I AHR IGIF+L ++ILQILAFFL
Sbjct: 281 WYYLHAGIQFVGFLFALATVVLGQQLYTKI---NADIPAHRSIGIFVLTITILQILAFFL 337

Query: 248 RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVI 307
           RP KD+K RR+WNWYH WFGR+ALFF ++N+VLGI  G AG  WKI YGFL+A ++L VI
Sbjct: 338 RPKKDAKIRRYWNWYHGWFGRIALFFGALNVVLGIHAGSAGIAWKICYGFLIATIMLTVI 397

Query: 308 VLETLSWMKKRSDKTTAPPTFQMNPVQ 334
           +LE LS  + R  +TT P +FQMNP+ 
Sbjct: 398 ILEVLS--RLRRSETTPPSSFQMNPIS 422

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573227|ref|XP_003554764.1| PREDICTED: uncharacterized protein LOC100792152 [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 259/327 (79%), Gaps = 10/327 (3%)

Query: 10  LQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGT 69
           L+Y +  D   TIILSA YT GWVG+GFS+DGMMAGSSAMVGW NK G  ++KQ+YL+G 
Sbjct: 76  LRYTKTGD-TTTIILSAPYTVGWVGIGFSRDGMMAGSSAMVGWINKHGHAKVKQFYLRGR 134

Query: 70  RSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLT 129
           R S+VI DKGELPL  VP  VA +GA IY+AFQL+      +QPI+LAF +++P + HL+
Sbjct: 135 RQSEVIIDKGELPLNTVPAAVATNGAEIYIAFQLQTTIPFGKQPILLAFSTKHPLNHHLS 194

Query: 130 HHVDKRTIMFDFSGGSSSVLYVSS---REKKNHGALGMIGWGIILPVGAIIPRYFKHKDP 186
            HVDK  I+FDFS GS+    VS+     +K+HG +G+IGWG+ILPVGAII RYF+HKDP
Sbjct: 195 KHVDKAAIIFDFSSGSTGP--VSNGLIHMRKSHGIVGIIGWGLILPVGAIIARYFRHKDP 252

Query: 187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFF 246
           LW+YLH++IQ VGF FGL TVLLG+QLY  ++V   +I AHRGIGIF+LVLSILQILAFF
Sbjct: 253 LWFYLHSVIQFVGFSFGLGTVLLGLQLYRNMHV---HIPAHRGIGIFVLVLSILQILAFF 309

Query: 247 LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAV 306
           LRP KDSK+R  WN YH WFGR+ALFFA++NIVLG++   AGN+WK GYGFLL++VL+AV
Sbjct: 310 LRPDKDSKYRNIWNLYHSWFGRMALFFAALNIVLGMRAAGAGNDWKAGYGFLLSIVLVAV 369

Query: 307 IVLETLSWMKKRSDKTTAPPTFQMNPV 333
           IVLE L+++ KRS+K + P TFQM+PV
Sbjct: 370 IVLEVLAYL-KRSEKRSLPQTFQMDPV 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506067|ref|XP_003521809.1| PREDICTED: uncharacterized protein LOC100782231 [Glycine max]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/325 (62%), Positives = 257/325 (79%), Gaps = 6/325 (1%)

Query: 10  LQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGT 69
           L+Y +  D   TIILSA YT GWVG+GFS+DGMMAGSSAMVGW NK G  ++KQ+YL+G 
Sbjct: 76  LRYTKTGD-TTTIILSAPYTVGWVGIGFSRDGMMAGSSAMVGWINKHGHAKVKQFYLRGR 134

Query: 70  RSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLT 129
           R S+VI DKGELPL  VP  VA +GA IY+AFQL+      +QPI+LAF +++P + HL+
Sbjct: 135 RQSEVIIDKGELPLNTVPAAVATNGAEIYIAFQLQTTIPFGKQPILLAFSTKHPLNHHLS 194

Query: 130 HHVDKRTIMFDFSGGSSSVLYVSSRE-KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLW 188
            HVDK  I+FDFS GS+  +       +K+HG +G+IGWG+ILPVGAII RYF++KDPLW
Sbjct: 195 KHVDKTAIIFDFSSGSTGPVSNGLIHIRKSHGIVGIIGWGLILPVGAIIARYFRYKDPLW 254

Query: 189 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLR 248
           +YLH++IQ VGF FGL TVLLG+QLY  ++V   +I AHRGIGIF+LVLSILQILAFFLR
Sbjct: 255 FYLHSVIQFVGFSFGLGTVLLGLQLYRNMHV---HIPAHRGIGIFVLVLSILQILAFFLR 311

Query: 249 PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV 308
           P KDSK+R  WN YH WFGR+ALFFA++NIVLG++   AGN+WK GYGFLL++VL+AVIV
Sbjct: 312 PDKDSKYRNIWNLYHGWFGRMALFFAALNIVLGMRAAGAGNDWKAGYGFLLSIVLVAVIV 371

Query: 309 LETLSWMKKRSDKTTAPPTFQMNPV 333
           LE L+++ KRS+K + P TFQM+PV
Sbjct: 372 LEVLAYL-KRSEKRSLPQTFQMDPV 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520280|ref|XP_003528791.1| PREDICTED: putative ferric-chelate reductase 1-like [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/327 (61%), Positives = 256/327 (78%), Gaps = 10/327 (3%)

Query: 10  LQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGT 69
           L+Y Q  D   TIILSA YT GWVG+GFS+DGMM GSSAMVGW +K G  +IKQ+YL+G 
Sbjct: 77  LRYFQNGD-TTTIILSAPYTIGWVGIGFSRDGMMVGSSAMVGWISKHGHAKIKQFYLRGR 135

Query: 70  RSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLT 129
           + S+VI DKGEL L N+P  VA +GA I++AFQL+     ++QPI+LAFGS+YP++ HL+
Sbjct: 136 KQSEVIIDKGELLLNNIPAAVATNGAEIHIAFQLQMTTPFQKQPILLAFGSKYPQNHHLS 195

Query: 130 HHVDKRTIMFDFSGGSSSVLYVSS---REKKNHGALGMIGWGIILPVGAIIPRYFKHKDP 186
            H DK  I+FDFS GS+    VSS   + + NHG L +IGWG+ILPVGAII RYF+HKDP
Sbjct: 196 KHEDKTAIVFDFSAGSTGP--VSSELIQMRTNHGILAIIGWGLILPVGAIIARYFRHKDP 253

Query: 187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFF 246
           LW+YLHAIIQ VGF FGL TV+LG+QLY+K++V   +I AHRGIGIF LVLSILQ+LA F
Sbjct: 254 LWFYLHAIIQFVGFTFGLGTVVLGLQLYSKMHV---HIPAHRGIGIFALVLSILQVLALF 310

Query: 247 LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAV 306
           LRP+KDSK R+ WNWYH WFGR+AL FA++NIVLG+Q   AG++WKIGYGF+  ++++  
Sbjct: 311 LRPNKDSKIRKIWNWYHSWFGRMALIFAAINIVLGMQAAGAGSDWKIGYGFVFGIMVVVA 370

Query: 307 IVLETLSWMKKRSDKTTAPPTFQMNPV 333
           IVLE L+++KK S+  + PP FQ++PV
Sbjct: 371 IVLEVLAYLKK-SEMRSLPPNFQLDPV 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821054|ref|XP_002878410.1| hypothetical protein ARALYDRAFT_349233 [Arabidopsis lyrata subsp. lyrata] gi|297324248|gb|EFH54669.1| hypothetical protein ARALYDRAFT_349233 [Arabidopsis lyrata subsp. lyrata]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/329 (58%), Positives = 246/329 (74%), Gaps = 8/329 (2%)

Query: 9   LLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQG 68
           +L+Y++  D+VMTII+SA+YTTGWVG+GFSK+G M GSSAMVGW +KKG  +IKQYYLQG
Sbjct: 67  VLRYSENRDNVMTIIVSALYTTGWVGIGFSKEGRMVGSSAMVGWISKKGHAKIKQYYLQG 126

Query: 69  TRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHF-H 127
           T   QV+ D+GEL L  VPPVVA+HGAMIY+AFQ+KF   + Q+ +ILA  + YP     
Sbjct: 127 TERDQVVPDQGELQLEKVPPVVALHGAMIYLAFQVKFSVRVPQRAVILALSTAYPSKLGR 186

Query: 128 LTHHVDKRTIMFDFS--GGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKD 185
           LT H DK T++ DFS   G++S+   +S EK  HG + ++GWG +LPVGAI+ RY +HKD
Sbjct: 187 LTKHDDKTTVIVDFSKASGATSMKTTTSTEKTKHGVMAILGWGFLLPVGAILARYLRHKD 246

Query: 186 PLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAF 245
           PLWYYLH   Q  GFIFGLA V+LGIQLYN++     +I AHRGIGIF+LVLSILQ+LAF
Sbjct: 247 PLWYYLHIGFQFTGFIFGLAAVILGIQLYNRI---QPDIPAHRGIGIFLLVLSILQVLAF 303

Query: 246 FLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG-YAGNEWKIGYGFLLAVVLL 304
           F RP K++K RR+WNWYHHW GR++LFF +VNIVLGI++    G+ WKIGYGF+L+V LL
Sbjct: 304 FARPQKETKMRRYWNWYHHWIGRISLFFGAVNIVLGIRMADNGGDGWKIGYGFVLSVTLL 363

Query: 305 AVIVLETLSWMKK-RSDKTTAPPTFQMNP 332
           A +VLE         S  +  PP+F+ +P
Sbjct: 364 AFVVLEIFRIRGSIGSPSSHTPPSFEAHP 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2076770	398	AT3G61750 [Arabidopsis thalian	0.961	0.806	0.544	1.4e-96
TAIR|locus:2091097	369	AT3G07570 [Arabidopsis thalian	0.922	0.834	0.379	2.3e-55
TAIR|locus:2049254	404	AT2G04850 [Arabidopsis thalian	0.473	0.391	0.341	1.6e-27
TAIR|locus:505006660	404	AT5G35735 "AT5G35735" [Arabido	0.874	0.722	0.280	1.7e-27
TAIR|locus:2077690	466	AT3G59070 [Arabidopsis thalian	0.850	0.609	0.278	4.7e-26
TAIR|locus:2090240	393	AT3G25290 "AT3G25290" [Arabido	0.508	0.432	0.337	5.2e-26
TAIR|locus:2123271	394	AT4G12980 "AT4G12980" [Arabido	0.502	0.426	0.344	1.8e-25
TAIR|locus:2168948	395	AT5G47530 [Arabidopsis thalian	0.520	0.440	0.331	7.6e-25
TAIR|locus:2130789	402	AT4G17280 [Arabidopsis thalian	0.476	0.395	0.341	1.1e-23
TAIR|locus:2160220	907	AT5G54830 "AT5G54830" [Arabido	0.359	0.132	0.308	1.7e-10

TAIR|locus:2076770 AT3G61750 [Arabidopsis thaliana (taxid:3702)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 179/329 (54%), Positives = 229/329 (69%)

Query:     9 LLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQG 68
             +L+Y++  D+VMTII+SA+YTTGWVG+GFSK+G M GSSAM+GW +KKG  +IKQYYLQG
Sbjct:    67 VLRYSENRDNVMTIIVSALYTTGWVGIGFSKEGRMVGSSAMIGWISKKGHAKIKQYYLQG 126

Query:    69 TRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHF-H 127
             T   QV+ D+GEL L  VPPVVA+HGAMIY+AFQ+KF   + ++ +ILAF + YP     
Sbjct:   127 TERDQVVPDQGELQLQKVPPVVALHGAMIYLAFQVKFAVRVPRRAVILAFSTAYPSKLGR 186

Query:   128 LTHHVDKRTIMFDFXXXXXXXX--XXXXREKKNHGALGMIGWGIILPVGAIIPRYFKHKD 185
             LT H DK T++ DF               EK  HG + ++GWG +LPVGAI+ RY +HKD
Sbjct:   187 LTKHDDKTTVIVDFSKASGATSIKTTTSTEKTKHGVMAILGWGFLLPVGAILARYLRHKD 246

Query:   186 PLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAF 245
             PLWYYLH   Q  GFIFGLA V+LGIQLYN++     +I AHRGIGIF+LVLS LQ+LAF
Sbjct:   247 PLWYYLHIGFQFTGFIFGLAAVILGIQLYNRIQ---PDIPAHRGIGIFLLVLSTLQVLAF 303

Query:   246 FLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNE-WKIGYGFXXXXXXX 304
             F RP K++K RR+WNWYHHW GR++LFF +VNIVLGI++   G + WKIGYGF       
Sbjct:   304 FARPQKETKMRRYWNWYHHWIGRISLFFGAVNIVLGIRMADNGGDGWKIGYGFVLSVTLL 363

Query:   305 XXXXXETLSWMKK-RSDKTTAPPTFQMNP 332
                  E         S  + +PP+F+ +P
Sbjct:   364 AFVVLEIFRIRGTIGSPSSRSPPSFETHP 392

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2091097 AT3G07570 [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 121/319 (37%), Positives = 175/319 (54%)

Query:     6 QHSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWF-NKKGQPRIKQY 64
             Q+ +L+YA+  ++  + ILSA  ++ ++G+GFS +G M GSSA+VGW  +  G   +K Y
Sbjct:    55 QNFILRYARTAENTWSFILSAPDSSAFIGIGFSTNGQMIGSSAIVGWIPSDGGSGTVKPY 114

Query:    65 YLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSR--Y 122
              L G    +V  D+G+L + N    +    + +YM FQL     L +Q ++ A G    +
Sbjct:   115 LLGGKSPGEVNPDQGDLTIVNGSLKIESVSSRLYMRFQLTAT--LPRQSLLYAVGPAGFF 172

Query:   123 PKH--FHLTHH--VDKRTIMFDFXXXXXXXXXXXXREKKNHGALGMIGWGIILPVGAIIP 178
             P    F L  H  V   TI ++             + KK HG + M GWGI++ VGAI+ 
Sbjct:   173 PSSPDFRLREHRFVTTTTINYNTGSQSVVKVSPHSKLKKTHGLMNMFGWGILIIVGAIVA 232

Query:   179 RYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLS 238
             R+ K  DP W+Y H  +Q  GF+ GL  V+ G+ L N+L  K  N+S H+G+GI ILV+ 
Sbjct:   233 RHMKQWDPTWFYAHIALQTTGFLLGLTGVICGLVLENRL--KANNVSKHKGLGITILVMG 290

Query:   239 ILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFX 298
             +LQ+LA   RP K SK+R++WNWYHH  GRL +  A  NI  GI +  AG  W  GYGF 
Sbjct:   291 VLQMLALLARPDKQSKYRKYWNWYHHNIGRLLIILAISNIFYGIHLAKAGTSWNGGYGFA 350

Query:   299 XXXXXXXXXXXETLSWMKK 317
                        E   ++KK
Sbjct:   351 VAVLALTAIGLEVRKFLKK 369

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2049254 AT2G04850 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
 Identities = 56/164 (34%), Positives = 77/164 (46%)

Query:   156 KKNHGALGMIGWGIILPVGAIIPRYFKHKD---PLWYYLHAIIQLVGFIFGLATVLLGIQ 212
             K  HG +  I WG +LP GA+  RY +      P W+Y+HA IQL GF+ G     +GI 
Sbjct:   216 KVTHGVVNAISWGFLLPAGAVTARYLRQMQSIGPTWFYIHAAIQLTGFLLGTIGFSIGIV 275

Query:   213 LYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALF 272
             L +  N        HR +GI     + LQ LA   RP   +KFRR+W  YHH+ G   + 
Sbjct:   276 LGH--NSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYACVV 333

Query:   273 FASVNIVLGIQIGYAGNEW-KIGYGFXXXXXXXXXXXXETLSWM 315
                VN+  G ++   G  + K+GY              E  SW+
Sbjct:   334 MGVVNVFQGFEVLREGRSYAKLGYCLCLSTLVGVCVAMEVNSWV 377

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:505006660 AT5G35735 "AT5G35735" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 88/314 (28%), Positives = 135/314 (42%)

Query:    30 TGWVGMGFSKDG-MMAGSSAMVGWFN---KKGQPRIKQYYLQGTR--SSQVIHDKGELPL 83
             + WV  G +     M G+ A+V + N    + Q         GTR   S +      L  
Sbjct:    76 SSWVAWGLNPSSTQMVGTQALVAFTNTTTNQFQAYTSSVSSYGTRLERSSLSFGVSGLSA 135

Query:    84 TNVPPVVAIHGAMIYMAFQLKFENHLRQQ-PIILAFGSRYPK---HFHLTHHVDKRTIMF 139
             T V   V I  A + ++  L   N L Q  P++    + +     +   +  +D RT   
Sbjct:   136 TLVSGEVTIF-ATLELSPNLITANQLWQVGPVVNGVPASHQTSGDNMRSSGRIDFRTGQ- 193

Query:   140 DFXXXXXXXXXXXXREKKNHGALGMIGWGIILPVGAIIPRYFK-HKDPLWYYLHAIIQLV 198
                           R++  HG L  + WG+++P+GA++ RY K   DP W+YLH   Q+ 
Sbjct:   194 --ASAGGGGSGDRLRKRNTHGVLNAVSWGVLMPMGAMMARYMKVFADPTWFYLHIAFQVS 251

Query:   199 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRF 258
             G++ G+A    GI+L N  +    + S HR +GI +   + LQ+ A  +RP  D K+R +
Sbjct:   252 GYVIGVAGWATGIKLGN--DSPGTSYSTHRNLGIALFTFATLQVFALLVRPKPDHKYRTY 309

Query:   259 WNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSWM--- 315
             WN YHH  G   +  + VNI  G  I    ++W+  Y              E L+W    
Sbjct:   310 WNVYHHTVGYTTIILSIVNIFKGFDILDPEDKWRWAYIGILIFLGACVLILEPLTWFIVL 369

Query:   316 --KKRSDKTTAPPT 327
               K R   T A PT
Sbjct:   370 RRKSRGGNTVAAPT 383

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2077690 AT3G59070 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 4.7e-26, P = 4.7e-26
 Identities = 86/309 (27%), Positives = 135/309 (43%)

Query:     4 INQHSLLQYAQRDDHVMTIIL--SAIYTTGWVGMGFSKDGM-MAGSSAMVGWFNKKGQPR 60
             +N +    YAQ +  V+ I    S + ++ W+    +     M G+ A+V + N      
Sbjct:    57 LNSYLHFNYAQ-ETGVLEIAYHHSNLESSSWISWAINPTSKGMVGAQALVAYRNSTSG-- 113

Query:    61 IKQYYLQGTRS-SQVIHDKG-ELPLTNVPPVVAIHGAMIYMAFQLK----FENHLRQQ-P 113
             + + Y     S S ++ +    L +T V    +    MI+    L       NHL Q  P
Sbjct:   114 VMRAYTSSINSYSPMLQESPLSLRVTQVSAEYSNGEMMIFATLVLPPNTTVVNHLWQDGP 173

Query:   114 IILAFGSRYPKHFHLTHHVDKRTIMFDFXXXXXXXXXXXXRE----KKNHGALGMIGWGI 169
               L  G R   H     ++ K     D             R     K+ H  +  + WGI
Sbjct:   174 --LKEGDRLGMHAMSGDNL-KSMASLDLLSGQVTTTKSVNRNMLLVKQIHAIVNALSWGI 230

Query:   170 ILPVGAIIPRYFKHK---DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISA 226
             ++P+G +  RY K+    DP W+Y+H + Q  G+  GL   L G  +Y   +      + 
Sbjct:   231 LMPIGVMAARYMKNYEVLDPTWFYIHVVCQTTGYFSGLIGGL-GTAIYMARHT-GMRTTL 288

Query:   227 HRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY 286
             H  IG+ +  L  LQIL+   RP+KD K+R++WNWYHH  G + +  +  NI  G+ I  
Sbjct:   289 HTVIGLLLFALGFLQILSLKARPNKDHKYRKYWNWYHHTMGYIVIVLSIYNIYKGLSILQ 348

Query:   287 AGNEWKIGY 295
              G+ WKI Y
Sbjct:   349 PGSIWKIAY 357

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2090240 AT3G25290 "AT3G25290" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 60/178 (33%), Positives = 91/178 (51%)

Query:   154 REKKNHGALGMIGWGIILPVGAIIPRY---FKHKDPLWYYLHAIIQLVGFIFGLATVLLG 210
             + +  HG L  + WGI+ P+GAII RY   F   DP W+YLH   Q   ++ G+A    G
Sbjct:   215 KNRNIHGILNAVSWGILFPIGAIIARYMRVFDSADPAWFYLHVSCQFSAYVIGVAGWATG 274

Query:   211 IQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLA 270
             ++L N+   +    SAHR IGI +  L+ +Q+ A  LRP KD K+R +WN YHH  G   
Sbjct:   275 LKLGNES--EGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDHKYRFYWNIYHHGVGYAI 332

Query:   271 LFFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSW---MKKRSDKTTAP 325
             L    +N+  G+ I    + +K  Y              E ++W   +K++S+ +  P
Sbjct:   333 LTLGIINVFKGLNILKPQDTYKTAYIAVIAVLGGIALLLEAITWVVVLKRKSNNSMKP 390

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2123271 AT4G12980 "AT4G12980" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 61/177 (34%), Positives = 92/177 (51%)

Query:   156 KKN-HGALGMIGWGIILPVGAIIPRY---FKHKDPLWYYLHAIIQLVGFIFGLATVLLGI 211
             K+N HG L  + WG++ P+GA+I RY   F+  DP W+YLH   Q   ++ G+A    G+
Sbjct:   217 KRNIHGILNAVSWGLLFPIGAMIARYMRIFESADPAWFYLHVSCQFSAYVIGVAGWATGL 276

Query:   212 QLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLAL 271
             +L ++   K    + HR IGI +  ++ LQ+ A  LRP KD KFR  WN YHH  G   L
Sbjct:   277 KLGSES--KGIQYNTHRNIGICLFSIATLQMFAMLLRPRKDHKFRFVWNIYHHGVGYSIL 334

Query:   272 FFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSW---MKKRSDKTTAP 325
                 +N+  G+ I    + +K  Y              E ++W   +K++S K+T P
Sbjct:   335 ILGIINVFKGLSILNPKHTYKTAYIAVIGTLGGITLLLEVVTWVIVLKRKSAKSTKP 391

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2168948 AT5G47530 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 60/181 (33%), Positives = 89/181 (49%)

Query:   154 REKKNHGALGMIGWGIILPVGAIIPRYFK---HKDPLWYYLHAIIQLVGFIFGLATVLLG 210
             R++  HG L  + WGI++P+GAII RY K     DP W+YLH   Q   +I G+A    G
Sbjct:   206 RKRNIHGILNGVSWGIMMPIGAIIARYLKVSKSADPAWFYLHVFCQSSAYIIGVAGWATG 265

Query:   211 IQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLA 270
             ++L N+        + HR +GI +  L+ +Q+ A FLRP  + K+R +WN YHH  G   
Sbjct:   266 LKLGNES--AGIQFTFHRAVGIALFCLATIQVFAMFLRPKPEHKYRVYWNIYHHTVGYSV 323

Query:   271 LFFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSW--MKKRSDKTTAPPTF 328
             +  A VN+  G+ I     +W+  Y              E  +W  + KR     +  T 
Sbjct:   324 IILAVVNVFKGLDILSPEKQWRNAYTAIIVVLGIVAVVLEGFTWYVVIKRGKAEASAKTS 383

Query:   329 Q 329
             Q
Sbjct:   384 Q 384

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2130789 AT4G17280 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 56/164 (34%), Positives = 80/164 (48%)

Query:   154 REKKNHGALGMIGWGIILPVGAIIPRYF---KHKDPLWYYLHAIIQLVGFIFGLATVLLG 210
             R++  HG L  + WGI++P+GAII RY    K  DP W+Y+H   Q   +I G+A    G
Sbjct:   214 RKRNIHGILNGVSWGIMMPLGAIIARYLRVAKSADPAWFYIHVFCQASAYIIGVAGWATG 273

Query:   211 IQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLA 270
             ++L    +      S HR IGI +  L+ +Q+ A FLRP  + K R +WN YHH  G   
Sbjct:   274 LKLGG--DSPGIQYSTHRAIGIALFSLATVQVFAMFLRPKPEHKHRLYWNIYHHTIGYTI 331

Query:   271 LFFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSW 314
             +    VN+  G+ I     +WK  Y              E  +W
Sbjct:   332 IILGVVNVFKGLGILSPKKQWKNAYIGIIVVLAIVATLLEAFTW 375

GO:0005576 "extracellular region" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2160220 AT5G54830 "AT5G54830" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 41/133 (30%), Positives = 64/133 (48%)

Query:   159 HGALGMIGWGIILPVGAIIPRYFKH-KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL 217
             HG +  + WGI+LP G +  RY KH K   W+ +H  +Q  G    LA V LG+ L+   
Sbjct:   689 HGFMMFLAWGILLPGGILSARYLKHIKGDGWFKIHMYLQCSG----LAIVFLGL-LFAVA 743

Query:   218 NVKNANISA-HRGIGIFILVLSILQILAFFLRPSKD------SKFRRFWNWYHHWFGRLA 270
              +   + S+ H   G   +VL+  Q +  +LRP+K       S  R  W + H   G+ A
Sbjct:   744 ELNGFSFSSTHVKFGFTAIVLACAQPVNAWLRPAKPAQGELISSKRLIWEYSHSIVGQSA 803

Query:   271 LFFASVNIVLGIQ 283
             +    V +  G++
Sbjct:   804 VVVGVVALFTGMK 816

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
cd08760	191	cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrom	2e-47
smart00665	129	smart00665, B561, Cytochrome b-561 / ferric reduct	3e-28
smart00664	148	smart00664, DoH, Possible catecholamine-binding do	3e-13
cd09631	138	cd09631, DOMON_DOH, DOMON-like domain of copper-de	2e-11
pfam03351	124	pfam03351, DOMON, DOMON domain	3e-09
pfam03188	137	pfam03188, Cytochrom_B561, Eukaryotic cytochrome b	3e-06
cd08761	183	cd08761, Cyt_b561_CYB561D2_like, Eukaryotic cytoch	2e-05
cd08554	131	cd08554, Cyt_b561, Eukaryotic cytochrome b(561)	8e-05
cd09628	169	cd09628, DOMON_SDR_2_like, DOMON domain of stromal	3e-04

>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including the FRRS1 gene product

 Score =  158 bits (401), Expect = 2e-47
 Identities = 75/174 (43%), Positives = 99/174 (56%), Gaps = 4/174 (2%)

Query: 139 FDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLV 198
             F   + S +  S    K HG L  I WGI++P+GA++ RYF   DP+W+YLHA +QL+
Sbjct: 19  SPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLL 78

Query: 199 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRF 258
             +  +A  +LGI L         N  AH  +GI +L L+ILQ L   LRP   SK R  
Sbjct: 79  AVLLAIAGFVLGIVLVQGGGGSLNN--AHAILGIIVLALAILQPLLGLLRPHPGSKKRSI 136

Query: 259 WNWYHHWFGRLALFFASVNIVLGIQIGYAG--NEWKIGYGFLLAVVLLAVIVLE 310
           WNW H W GR AL  A VNI LG+ +  AG    WKI YG ++AV+ L  ++LE
Sbjct: 137 WNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYLILE 190

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 191

>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane domain

 Score =  106 bits (266), Expect = 3e-28
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 6/129 (4%)

Query: 159 HGALGMIGWGIILPVGAIIPRY--FKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNK 216
           H  L ++G+G ++    ++ R        P W+ LH ++Q++  + G+  +L     +N+
Sbjct: 2   HPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNE 61

Query: 217 LNVKNANISAHRGIGIFILVLSILQILAFFLRPSKD---SKFRRFWNWYHHWFGRLALFF 273
             + N   S H  +G+   VL+ LQ L+ FLRP      SK+R + N YH + G  A   
Sbjct: 62  SGIAN-FYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFIL 120

Query: 274 ASVNIVLGI 282
           A V I LG+
Sbjct: 121 AIVTIFLGL 129

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders. Length = 129

>gnl|CDD|214768 smart00664, DoH, Possible catecholamine-binding domain present in a variety of eukaryotic proteins

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 14  QRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQ 73
             ++ +   +     T GWV +GFS DG MAG+  +V W +  G+  +K YY  G     
Sbjct: 11  DGENSIAFELSGPTSTNGWVAIGFSPDGQMAGADVVVAWVDNNGRVTVKDYYTPG-YGPP 69

Query: 74  VIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFE--------NHLRQQPIILAFGSRYPKH 125
           V  D+ ++              ++   F+ K                 ++ A G     +
Sbjct: 70  VEDDQQDV---TDLLSATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLWAKGP-LSPN 125

Query: 126 FHLTHH 131
             L +H
Sbjct: 126 GGLGYH 131

A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press). Length = 148

>gnl|CDD|187689 cd09631, DOMON_DOH, DOMON-like domain of copper-dependent monooxygenases and related proteins

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 10 LQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQG 68
          L ++   +  +T  LSA  TTGWVG+GFS DG M G+ A+VGW +  G   +  YYL G
Sbjct: 11 LSWSVDGEGTITFELSA-RTTGWVGIGFSPDGGMVGADAVVGWVD-GGNAYVTDYYLTG 67

This diverse family characterizes DOMON domains found in dopamine beta-hydroxylase (DBH), monooxygenase X (MOX), and various other proteins, some of which contain DOMON domains exclusively; the family is not restricted to eukaryotes. DBH is a membrane-bound enzyme that converts dopamine to L-norepinephrine, and plays a central role in the metabolism of catecholamine neurotransmitters. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases. Length = 138

>gnl|CDD|217508 pfam03351, DOMON, DOMON domain

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 16 DDHVMTIILSAIYTT-GWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQV 74
          D   +   LS    T GWV +GFS DG M+ +  ++GW    G+  ++ YY  G   +  
Sbjct: 14 DGQEIEFELSGKVNTNGWVAIGFSPDGGMSNADVVIGW-VDNGRVYVQDYYSTGGYGAPR 72

Query: 75 IHDKGELPLTNV 86
          + D G+  LT +
Sbjct: 73 VDDTGQQDLTLL 84

The DOMON (named after dopamine beta-monooxygenase N-terminal) domain is 110-125 residues long. It is predicted to form an all beta fold with up to 11 strands and is secreted to the extracellular compartment. The beta-strand folding produces a hydrophobic pocket which appears to bind soluble haem. This is consistent with the predominant architectures where the protein is associated with cytochromes or enzymatic domains whose activity involves redox or electron transfer reactions potentially as a direct participant in the electron transfer process. The DOMON domain superfamily, of which this is just one member, shows (1) multiple hydrophobic residues that contribute to the hydrophobic core of the strands of the beta-sandwich, and small residues found at the boundaries of strands and loops, (2) a strongly conserved charged residue (usually arginine/lysine) at the end of strand 9, which possibly stabilises the loop between 9 and 10, and (3) a polar residue (usually histidine, lysine or arginine), that interacts or coordinates with ligands. The suggested superfamily includes both haem- and sugar-binding members: the haem-binding families being the ethyl-Benzoate dehydrogenase family EB_dh, pfam09459, the cellobiose dehydrogenase family CBDH and this family, and the sugar-binding families being the xylanases, CBM_4_9, pfam02018. The common feature of the superfamily is the 11-beta-strand structure, although the first and eleventh strands are not well conserved either within families or between families. Length = 124

>gnl|CDD|217413 pfam03188, Cytochrom_B561, Eukaryotic cytochrome b561

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 191 LHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQIL---AFFL 247
           LH ++ L+  I G+  +L   + +N+L + +   S H  +G+  ++L +LQ L   A FL
Sbjct: 37  LHWVLHLLALILGVVGLLAVFKFHNELGIPHFY-SLHSWLGLTTVILFLLQWLSGFALFL 95

Query: 248 RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGI 282
            P      R     +H +FG +    A V  +LG+
Sbjct: 96  FPGLSRSIRSLLLPWHVFFGLVIFVLAIVTALLGL 130

Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a eukaryotic family. Members of the 'prokaryotic cytochrome b561' family can be found in Pfam: PF01292. Length = 137

>gnl|CDD|176491 cd08761, Cyt_b561_CYB561D2_like, Eukaryotic cytochrome b(561), including the CYB561D2 gene product

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 191 LHAIIQLVGFIFGLATVLLGIQLYNK-LNVKNANISAHRGIGIFILVLSILQIL---AFF 246
           LH I+QL+  +  LA   L    YNK  N K    S H  +G+  ++L +LQ L   A  
Sbjct: 60  LHWILQLLALLCILAG--LVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALL 117

Query: 247 LRPSK---DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVL 303
             P     +SK ++    YH   G +A       +VLG++  +          + LA+ +
Sbjct: 118 YPPGLRRGESKAKKLK-KYHRLSGYVAYLLGLATLVLGLETRWFSKNVTHVALWYLALAV 176

Query: 304 LAVIVL 309
              +  
Sbjct: 177 ALALAG 182

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 183

>gnl|CDD|176489 cd08554, Cyt_b561, Eukaryotic cytochrome b(561)

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 190 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQI---LAFF 246
            LHAI+ L+ F+ GL  +L     +N   + N   S H  +G+  ++L +LQ       F
Sbjct: 37  LLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLY-SLHSWLGLATVLLFLLQFLSGFVLF 95

Query: 247 LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGI 282
           L P     +R     +H +FG      A   I+LGI
Sbjct: 96  LLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous. Length = 131

>gnl|CDD|187686 cd09628, DOMON_SDR_2_like, DOMON domain of stromal cell-derived receptor 2 (ferric chelate reductase 1) and related proteins

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%)

Query: 7  HSLLQYAQRDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYL 66
          + L+ Y    D V   +       G+V +GFS D  M     +    +  G+  ++  Y 
Sbjct: 27 NFLVTYRVDGDSVEFELSGKTVDDGYVAVGFSDDKKMGDDDVVECVRDAGGRVEVRHSYN 86

Query: 67 QGTRSSQ 73
           GT ++Q
Sbjct: 87 PGTGNTQ 93

Stromal cell-derived receptor 2 (or ferric chelate reductase 1) reduces Fe(3+) to Fe(2+) ahead of iron transport from the endosome to the cytoplasm. This transmembrane protein is a member of the cytochrome b561 family and contains a DOMON domain which may bind to heme or another ligand. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	100.0
KOG4293	403	consensus Predicted membrane protein, contains DoH	99.96
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	99.93
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	99.91
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	99.89
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	99.89
PLN02351	242	cytochromes b561 family protein	99.88
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	99.87
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	99.86
smart00664	148	DoH Possible catecholamine-binding domain present	99.85
PLN02810	231	carbon-monoxide oxygenase	99.85
PLN02680	232	carbon-monoxide oxygenase	99.84
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	99.84
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	99.84
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	99.83
PF03351	124	DOMON: DOMON domain; InterPro: IPR005018 The DOMON	99.79
KOG1619	245	consensus Cytochrome b [Energy production and conv	99.77
cd00241	184	CDH_cytochrome Cellobiose dehydrogenase (Cellobios	99.42
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	99.33
KOG3568	603	consensus Dopamine beta-monooxygenase [Amino acid	98.85
PF04526	101	DUF568: Protein of unknown function (DUF568); Inte	98.26
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	97.2
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	96.88
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	96.82
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	96.64
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	96.61
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	96.47
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	96.35
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	96.23
PLN02680	232	carbon-monoxide oxygenase	96.07
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	95.73
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	94.96
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	94.72
COG2717	209	Predicted membrane protein [Function unknown]	94.53
PLN02351	242	cytochromes b561 family protein	94.39
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	94.14
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	93.68
PLN02810	231	carbon-monoxide oxygenase	93.4
KOG1619	245	consensus Cytochrome b [Energy production and conv	91.53
PF10067	103	DUF2306: Predicted membrane protein (DUF2306); Int	91.34
PF13172	34	PepSY_TM_1: PepSY-associated TM helix	90.81
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	89.97
PRK11513	176	cytochrome b561; Provisional	89.4
COG5658	204	Predicted integral membrane protein [Function unkn	88.37
PF01794	125	Ferric_reduct: Ferric reductase like transmembrane	87.58
TIGR02125	211	CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochro	87.02
PF04238	133	DUF420: Protein of unknown function (DUF420); Inte	86.15
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	85.94
PF13789	110	DUF4181: Domain of unknown function (DUF4181)	84.71
PF13706	37	PepSY_TM_3: PepSY-associated TM helix	84.45
PF01292	182	Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPr	83.8
COG3038	181	CybB Cytochrome B561 [Energy production and conver	82.66
TIGR01583	204	formate-DH-gamm formate dehydrogenase, gamma subun	80.26
TIGR01191	184	ccmC heme exporter protein CcmC. This model descri	80.17

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=100.00  E-value=5.4e-33  Score=244.38  Aligned_cols=159  Identities=45%  Similarity=0.832  Sum_probs=145.5

Q ss_pred             cccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892          151 VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI  230 (334)
Q Consensus       151 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l  230 (334)
                      +.+..+++||++|++||++++|+|++++||++..++.||++|+.+|+++++++++|+++++...  ..+.+++++.|+++
T Consensus        31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~--~~~~~~~~~~H~~l  108 (191)
T cd08760          31 SSDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV--QGGGGSLNNAHAIL  108 (191)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCcCcchhh
Confidence            3678999999999999999999999999998666789999999999999999999999998865  12224799999999


Q ss_pred             hHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCC--CcchhhHHHHHHHHHHHHHH
Q 019892          231 GIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAG--NEWKIGYGFLLAVVLLAVIV  308 (334)
Q Consensus       231 G~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~--~~~~~~y~~~~~~~~~~~~~  308 (334)
                      |+++++++++|+++|++||.+..+.|+.|+++|+++|++++++|++|+.+|+.+.+.+  +.+.+.|+++++++++++++
T Consensus       109 Gl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (191)
T cd08760         109 GIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYLI  188 (191)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888999999999999999999999999999999987  78889999999999999998


Q ss_pred             HHH
Q 019892          309 LET  311 (334)
Q Consensus       309 le~  311 (334)
                      +|+
T Consensus       189 l~~  191 (191)
T cd08760         189 LEI  191 (191)
T ss_pred             HcC
Confidence            873

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]

Probab=99.96  E-value=2.5e-30  Score=250.53  Aligned_cols=310  Identities=34%  Similarity=0.638  Sum_probs=244.2

Q ss_pred             ccceEEEEEe-CCCcEEEEEEEEcCCCcEEEEEECCCC-CCCCCcEEEEEEcC-CCCeEEEEEEeecccccccccCCCCc
Q 019892            5 NQHSLLQYAQ-RDDHVMTIILSAIYTTGWVGMGFSKDG-MMAGSSAMVGWFNK-KGQPRIKQYYLQGTRSSQVIHDKGEL   81 (334)
Q Consensus         5 ~~~~~l~W~~-~~~~~i~f~l~a~~~~gWvaiGfs~~~-~M~gsd~vI~~~~~-~G~~~v~~~~~~g~~~p~v~~~~~~l   81 (334)
                      ..+-.+++.. ++|..+.+.+.++....|++.+++|.+ .|.++.++++|..+ +|...+..++..++.+ ...+....+
T Consensus        44 ~~~~~i~~~~~~~~~~~~i~~~~~~~~~w~~~~~~p~~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~-s~~~~~~~~  122 (403)
T KOG4293|consen   44 TLNSFIHYTYNSANGVLSIAFSAPLSSAWVAWAINPTGTGMVGSRALVAYAGSSSGATTVKTYVILGYSP-SLVPALLSF  122 (403)
T ss_pred             CCCceEEEEEecCCCeEEEEEecCCcccccccccCCccccccccceeeeeeccccchhhceeeeecccch-hhcccccce
Confidence            4455677774 557899999999855559999999865 79999999999876 5777888888888775 333332223


Q ss_pred             cccCCCceEEEeC---cEEEEEEEEecCCCCCcccEEEccCCCCCCCCCcccccCCC-----ceeEeecC--CCccccc-
Q 019892           82 PLTNVPPVVAIHG---AMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKR-----TIMFDFSG--GSSSVLY-  150 (334)
Q Consensus        82 ~~~~~~~~~~~~~---g~~~~~F~r~~~~~~~~~~~IwA~G~~~~~~~~l~~H~~~g-----~~~ldL~~--g~~~~~~-  150 (334)
                      ++.+.+......+   ..++++|+.+. .+...+..+|+.|+......++.+|+..+     ...+|++.  |.....+ 
T Consensus       123 ~~~~~~~~~~~~~~~~~~if~~~~l~~-~~~~~~~~~w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  201 (403)
T KOG4293|consen  123 TLGNVRAECNLRSSSPIGIFASFKLAG-ANGGKYSAVWQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSE  201 (403)
T ss_pred             eeecCcchhhccCCCCceEEEEEEeec-CCCceeEEEEEccCCccCCCCCccCccccCCccceeeccccccccccccccc
Confidence            3322221112233   67888888774 12678899999999754357888887642     23445544  3222111 


Q ss_pred             -----cccchhhhhHHHHHHHHHHHHhhhhhhhhhccCC---CChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCC
Q 019892          151 -----VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHK---DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNA  222 (334)
Q Consensus       151 -----~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~---~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~  222 (334)
                           ....+...||++|.++|++++|.|++.+||+|.+   .+.||++|+.+|..++++.+.|+..+.+..++..  ..
T Consensus       202 ~~~~~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~--~~  279 (403)
T KOG4293|consen  202 GNFNSSGLKLRMTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESD--GT  279 (403)
T ss_pred             CcccCcchhccccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCC--ce
Confidence                 1444556699999999999999999999999987   8899999999999998888899998888777533  25


Q ss_pred             CcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcch-hhHHHHHHH
Q 019892          223 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWK-IGYGFLLAV  301 (334)
Q Consensus       223 ~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~-~~y~~~~~~  301 (334)
                      ....|..+|+.++++.++|++..++||.++++.|++||++|+..||..+++|++|++.|+.+.+....|. +.|+.+.+.
T Consensus       280 ~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~~~  359 (403)
T KOG4293|consen  280 VYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSILAV  359 (403)
T ss_pred             eeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEEEE
Confidence            6799999999999999999999999999999999999999999999999999999999999999888887 789988888


Q ss_pred             HHHHHHHHHHHHHhhhC
Q 019892          302 VLLAVIVLETLSWMKKR  318 (334)
Q Consensus       302 ~~~~~~~le~~~~~~~r  318 (334)
                      ..++.+.+|+++|+..-
T Consensus       360 ~~~~~~~le~~~~~~~~  376 (403)
T KOG4293|consen  360 LGLIAVILEILSWRITI  376 (403)
T ss_pred             echhhhhhhhheeeeee
Confidence            88999999998887743

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=99.93  E-value=1.5e-26  Score=190.87  Aligned_cols=124  Identities=31%  Similarity=0.522  Sum_probs=111.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhh-c-cCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHH
Q 019892          158 NHGALGMIGWGIILPVGAIIPRY-F-KHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFIL  235 (334)
Q Consensus       158 ~Hg~lm~~aw~~l~p~gil~aR~-~-k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~  235 (334)
                      +||++|.+||++++|+|++++|+ . +..++.|+++|+.+|.++++++++|+++++...++.+ ++|++++|+++|++++
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~-~~~~~s~H~~lGl~~~   79 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESG-IANFYSLHSWLGLAAF   79 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCCccchhHHHHHHHH
Confidence            69999999999999999999997 3 3346789999999999999999999999988766543 2489999999999999


Q ss_pred             HHHHHHHHHhhcccCCC---CCCcccccchhHHHHHHHHHHHHHHHHHhh
Q 019892          236 VLSILQILAFFLRPSKD---SKFRRFWNWYHHWFGRLALFFASVNIVLGI  282 (334)
Q Consensus       236 ~l~~~Q~~~g~~r~~~~---~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~  282 (334)
                      ++.++|++.|++++.++   .+.|+.++++|+++|++++++|++|+.+|+
T Consensus        80 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~  129 (129)
T smart00665       80 VLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL  129 (129)
T ss_pred             HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999987765   677899999999999999999999999985

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=99.91  E-value=5.1e-24  Score=177.43  Aligned_cols=127  Identities=30%  Similarity=0.508  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhcc---CCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHH
Q 019892          158 NHGALGMIGWGIILPVGAIIPRYFK---HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFI  234 (334)
Q Consensus       158 ~Hg~lm~~aw~~l~p~gil~aR~~k---~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~  234 (334)
                      +|+++|++||++++|.|++++|+.+   ..++.|+++|..+|.++++++++|+++++...+..+ .+|++++|+++|+++
T Consensus         1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~-~~h~~s~H~~lG~~~   79 (137)
T PF03188_consen    1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNG-KPHFKSWHSILGLAT   79 (137)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCCchhhhhHHH
Confidence            6999999999999999999999732   235789999999999999999999999887655433 358999999999999


Q ss_pred             HHHHHHHHHHhhcc---cCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892          235 LVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       235 ~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      ++++++|++.|+++   |.++.+.|+.++++|+++|++++++|++|+.+|+...
T Consensus        80 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~  133 (137)
T PF03188_consen   80 FVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEK  133 (137)
T ss_pred             HHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999875   3455567888999999999999999999999999543

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=99.89  E-value=2.3e-23  Score=173.36  Aligned_cols=134  Identities=18%  Similarity=0.179  Sum_probs=119.3

Q ss_pred             cccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892          151 VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI  230 (334)
Q Consensus       151 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l  230 (334)
                      |+..++++|+.||.+++.++++.||++.|..|..++.+..+|+.+|.+++++.++|+..++...++.+ .+|++|+|+|+
T Consensus         3 ~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~-~~~~~SlHSwl   81 (144)
T cd08766           3 NKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVG-IPNLYSLHSWL   81 (144)
T ss_pred             CCcceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-ccccccHHHHH
Confidence            36678999999999999999999999999988767788899999999999999999999888766544 35899999999


Q ss_pred             hHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892          231 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       231 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      |++++++..+|.+.|+   +.|....+.|....++|+++|+++++++++++.+|+.+.
T Consensus        82 Gl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek  139 (144)
T cd08766          82 GIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEK  139 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999995   477765556778888999999999999999999998764

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=99.89  E-value=2.5e-23  Score=172.12  Aligned_cols=126  Identities=27%  Similarity=0.377  Sum_probs=110.7

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHH
Q 019892          156 KKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFI  234 (334)
Q Consensus       156 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~  234 (334)
                      +++|+++|.++|++++|.|++++|++|.. ++.|+++|+.+|.+++++.++|+.+++...++. +..|+.+.|+++|+++
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~-~~~h~~s~Hs~lGl~~   80 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAG-GIANLYSLHSWLGLAT   80 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CcccchhHHHHHHHHH
Confidence            58999999999999999999999998764 468899999999999999999999998776532 2358999999999999


Q ss_pred             HHHHHHHHHHhhcc---cCCCCCCcccccchhHHHHHHHHHHHHHHHHHhh
Q 019892          235 LVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGI  282 (334)
Q Consensus       235 ~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~  282 (334)
                      +++.++|++.|+.+   |.+..+.|+.++++|+++|+++++++++|+++|+
T Consensus        81 ~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~  131 (131)
T cd08554          81 VLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI  131 (131)
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999765   4433335889999999999999999999999985

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PLN02351 cytochromes b561 family protein

Probab=99.88  E-value=2.5e-22  Score=178.17  Aligned_cols=132  Identities=16%  Similarity=0.107  Sum_probs=112.8

Q ss_pred             ccchh-hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892          152 SSREK-KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI  230 (334)
Q Consensus       152 ~~~~~-~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l  230 (334)
                      .+..+ ++|++||.++|.+|.+.||++.|.+|..++.|+.+|..+|.+++++.++|+..  ...+..+..+|++++|+|+
T Consensus        46 ~~~iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWl  123 (242)
T PLN02351         46 EDLVYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWM  123 (242)
T ss_pred             ccceeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHH
Confidence            33355 79999999999999999999999998766779999999999999999999988  3223221125799999999


Q ss_pred             hHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892          231 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       231 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      |++++++..+|.+.|+   +.|......|....++|.++|+++++++++++.+|+.+.
T Consensus       124 Gl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EK  181 (242)
T PLN02351        124 GLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEK  181 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999996   356665567888889999999999999999999998763

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=99.87  E-value=7e-22  Score=172.58  Aligned_cols=132  Identities=20%  Similarity=0.198  Sum_probs=111.9

Q ss_pred             ccchhhhhHHHHHHHHHHHHhhhhhhhhhcc----CCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccc
Q 019892          152 SSREKKNHGALGMIGWGIILPVGAIIPRYFK----HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAH  227 (334)
Q Consensus       152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k----~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H  227 (334)
                      ...++++|+++|+++|++++|+|++..|...    ..++.|+++|+.+|.++++++++|+.+++...+.. +.+|+++.|
T Consensus        17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~-~~~hf~s~H   95 (183)
T cd08761          17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERN-GKPHFTSWH   95 (183)
T ss_pred             ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCccchh
Confidence            4568999999999999999999999765321    13567899999999999999999998888765443 335899999


Q ss_pred             hhhhHHHHHHHHHHHHHhhc---ccCCC--CCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 019892          228 RGIGIFILVLSILQILAFFL---RPSKD--SKFRRFWNWYHHWFGRLALFFASVNIVLGIQI  284 (334)
Q Consensus       228 ~~lG~~~~~l~~~Q~~~g~~---r~~~~--~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~  284 (334)
                      +++|++++++.++|++.|++   +|...  .++|+.++++|+++|++++++|++|+.+|+..
T Consensus        96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761          96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999975   33332  35678899999999999999999999999988

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=99.86  E-value=2.7e-21  Score=170.48  Aligned_cols=133  Identities=22%  Similarity=0.277  Sum_probs=114.8

Q ss_pred             ccchhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhhHHHHHHHHHHHHHHhheeeecccc-ccCCCCcccchh
Q 019892          152 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL-NVKNANISAHRG  229 (334)
Q Consensus       152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~-~~~~~~~~~H~~  229 (334)
                      +...+++|+++|.+++.+++..||++.|.++.. ++.+..+|+.+|.+++++.++|+..++...++. ++.+|++|+|++
T Consensus        20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSw   99 (214)
T cd08764          20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSW   99 (214)
T ss_pred             CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH
Confidence            456799999999999999999999999988853 345678999999999999999998887766554 234689999999


Q ss_pred             hhHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 019892          230 IGIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI  284 (334)
Q Consensus       230 lG~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~  284 (334)
                      +|++++++..+|.+.|+   +.|......|+...++|+++|+++++++++++.+|+.+
T Consensus       100 lGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~e  157 (214)
T cd08764         100 LGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITE  157 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999996   46765555677777799999999999999999999976

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins

Probab=99.85  E-value=3.1e-20  Score=156.55  Aligned_cols=135  Identities=23%  Similarity=0.352  Sum_probs=106.0

Q ss_pred             ccceEEEEEeCCCcEEEEEEEEcC-CCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEEeecccccccccCCCCccc
Q 019892            5 NQHSLLQYAQRDDHVMTIILSAIY-TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPL   83 (334)
Q Consensus         5 ~~~~~l~W~~~~~~~i~f~l~a~~-~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~~~g~~~p~v~~~~~~l~~   83 (334)
                      +++|.++|+.+.++.|+|+++++. +.||+|||||++++|.++|+++||++++|.+.+.|+|++|+..|..+..++ ++.
T Consensus         1 ~~~~~l~W~~~~~~~v~~~l~~~~~~~gwvaiGfs~~~~M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~~~~-~~~   79 (148)
T smart00664        1 SCDYFLSWSVDGENSIAFELSGPTSTNGWVAIGFSPDGQMAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDDQQD-VTD   79 (148)
T ss_pred             CceEEEEEEECCCCeEEEEEEEecCCCCEEEEEECCCCCcCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCcccc-ccc
Confidence            468999999754389999999972 389999999999999999999999987789999999999999886544333 322


Q ss_pred             cCCCceEEEeCcEEEEEEEEecCCC--------CCcccEEEccCCCCCCCCCcccccC--CCceeEeecCC
Q 019892           84 TNVPPVVAIHGAMIYMAFQLKFENH--------LRQQPIILAFGSRYPKHFHLTHHVD--KRTIMFDFSGG  144 (334)
Q Consensus        84 ~~~~~~~~~~~g~~~~~F~r~~~~~--------~~~~~~IwA~G~~~~~~~~l~~H~~--~g~~~ldL~~g  144 (334)
                      . .  +...++|.++|+|+|+++..        +.+++++||.|+.. .++.+.+|+.  .+...+++..+
T Consensus        80 ~-~--~~~~~~g~~~~~f~R~l~t~d~~d~~~~~~~~~~i~a~G~~~-~~~~~~~H~~~~~~~~~i~~~~~  146 (148)
T smart00664       80 L-L--SATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLWAKGPLS-PNGGLGYHDFSLKSTKKVCLSSC  146 (148)
T ss_pred             c-e--eEEEECCEEEEEEEEEccCCCccccccCCCeEEEEEEECCCC-CCCCeeeccccccCceEEEeccC
Confidence            1 0  23688999999999998641        34789999999821 2577999986  45667777654

A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).

>PLN02810 carbon-monoxide oxygenase

Probab=99.85  E-value=1.2e-20  Score=166.12  Aligned_cols=134  Identities=21%  Similarity=0.202  Sum_probs=120.2

Q ss_pred             cccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892          151 VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI  230 (334)
Q Consensus       151 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l  230 (334)
                      +++..+++|++||.+++.++...||++.|.++..++.+..+|..+|.+++++.++|+..++...+..+. +|++|+|+|+
T Consensus        42 ~~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i-~nlySLHSWl  120 (231)
T PLN02810         42 NKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGI-ANLYSLHSWL  120 (231)
T ss_pred             CCCceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CceeeHHHHH
Confidence            345689999999999999999999999998886667788999999999999999999999988776543 6899999999


Q ss_pred             hHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892          231 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       231 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      |++++++..+|.+.|+   +.|....+.|....++|.++|..+++++++++.+|+.+.
T Consensus       121 Gl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EK  178 (231)
T PLN02810        121 GIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEK  178 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999997   578776677888889999999999999999999998863

>PLN02680 carbon-monoxide oxygenase

Probab=99.84  E-value=1.5e-20  Score=166.74  Aligned_cols=133  Identities=21%  Similarity=0.205  Sum_probs=117.6

Q ss_pred             ccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhh
Q 019892          152 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG  231 (334)
Q Consensus       152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG  231 (334)
                      +..++++|++||.+++.++...+|++.|..+..++.+..+|+.+|.+++++.++|+...++..++.+. +|++|+|+|+|
T Consensus        43 ~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~-~nfySlHSWlG  121 (232)
T PLN02680         43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGI-DNFYSLHSWLG  121 (232)
T ss_pred             CcceEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cccccHHHHHH
Confidence            45689999999999999999999999998887667788999999999999999999998887765443 68999999999


Q ss_pred             HHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892          232 IFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       232 ~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      ++++++..+|.+.|+   +.|....+.|+...++|+++|+++++++++++.+|+.+.
T Consensus       122 l~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek  178 (232)
T PLN02680        122 LACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEK  178 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999996   467765556777779999999999999999999998763

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=99.84  E-value=5.2e-21  Score=163.12  Aligned_cols=131  Identities=21%  Similarity=0.236  Sum_probs=115.2

Q ss_pred             chhhhhHHHHHHHHHHHHhhhhhhhhhccC---CCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892          154 REKKNHGALGMIGWGIILPVGAIIPRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI  230 (334)
Q Consensus       154 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~---~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l  230 (334)
                      +.+++|+++|.+++.+|..+||++.|..++   .+..|+.+|..+|.+++++.++|+..++...++.+. +|++|+|+++
T Consensus        33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~-~nlySlHSWl  111 (179)
T cd08762          33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHT-ANLYSLHSWV  111 (179)
T ss_pred             CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cchhhHHHHH
Confidence            489999999999999999999999996653   245678999999999999999999999987776443 6899999999


Q ss_pred             hHHHHHHHHHHHHHhhc---ccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892          231 GIFILVLSILQILAFFL---RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       231 G~~~~~l~~~Q~~~g~~---r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      |++++++..+|.+.|++   .|......|....++|+++|+++++++++++.+|+.+.
T Consensus       112 Gl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek  169 (179)
T cd08762         112 GICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEK  169 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999963   56555567888899999999999999999999998864

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=99.84  E-value=7.2e-21  Score=159.24  Aligned_cols=132  Identities=22%  Similarity=0.237  Sum_probs=115.1

Q ss_pred             cchhhhhHHHHHHHHHHHHhhhhhhhhhccC---CCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchh
Q 019892          153 SREKKNHGALGMIGWGIILPVGAIIPRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRG  229 (334)
Q Consensus       153 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~---~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~  229 (334)
                      ...+++|+.||++++.++...+|++.|..+.   .++.+..+|+.+|.+++++.++|+...+...++.+ .+|++|+|++
T Consensus         9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~-~~~fySlHSw   87 (153)
T cd08765           9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKN-IPNMYSLHSW   87 (153)
T ss_pred             CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCccccHHHH
Confidence            4589999999999999999999999986542   24567899999999999999999999888766543 3689999999


Q ss_pred             hhHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892          230 IGIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       230 lG~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      +|++++++..+|.+.|+   +.|......|....++|+++|+++++|+++++.+|+.+.
T Consensus        88 lGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek  146 (153)
T cd08765          88 VGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEK  146 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999996   367655567888899999999999999999999999764

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=99.83  E-value=1.9e-20  Score=155.74  Aligned_cols=131  Identities=20%  Similarity=0.271  Sum_probs=115.3

Q ss_pred             chhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhH
Q 019892          154 REKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGI  232 (334)
Q Consensus       154 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~  232 (334)
                      ..+++|+.+|.+++.+++..++++.|..+.. ++...++|+.+|.+++++.++|+...+...++.+ .+|++|.|+++|+
T Consensus         5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~-~~hf~SlHswlGl   83 (143)
T cd08763           5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANG-YPDMYSLHSWCGI   83 (143)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCccccHHHHHHH
Confidence            4899999999999999999999999987743 4566789999999999999999999887666543 4689999999999


Q ss_pred             HHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892          233 FILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       233 ~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      +++++..+|.+.|+   +.|....+.|..++++|+++|+++++++++++.+|+...
T Consensus        84 ~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek  139 (143)
T cd08763          84 LTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEK  139 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999995   467766667889999999999999999999999998753

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals

Probab=99.79  E-value=2.3e-18  Score=140.58  Aligned_cols=110  Identities=25%  Similarity=0.463  Sum_probs=90.6

Q ss_pred             ccceEEEEEeC-CCcEEEEEEEEcC-CCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEE-eecccccccccC-CCC
Q 019892            5 NQHSLLQYAQR-DDHVMTIILSAIY-TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYY-LQGTRSSQVIHD-KGE   80 (334)
Q Consensus         5 ~~~~~l~W~~~-~~~~i~f~l~a~~-~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~-~~g~~~p~v~~~-~~~   80 (334)
                      ++.|.|+|+.. +++.|+|+++++. +.||+|+|||+++.|.++|+++|+.+ +|.+.+.++| ..++.+|..+.. +.+
T Consensus         2 ~~~~~l~w~~~~~~~~i~~~l~~~~~~~~w~aiGfs~~~~M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~~~   80 (124)
T PF03351_consen    2 DCNFSLSWTVDGDNNTIEFELTGPANTNGWVAIGFSDDGGMGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGSQD   80 (124)
T ss_pred             CceEEEEEEEECCCCEEEEEEEeccCCCCEEEEEEccccCCCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccCCc
Confidence            57899999964 5567999999873 38999999999889999999999998 6999999999 899998877753 233


Q ss_pred             ccccCCCceEEEeCcEEEEEEEEecCC---------CCCcccEEEccC
Q 019892           81 LPLTNVPPVVAIHGAMIYMAFQLKFEN---------HLRQQPIILAFG  119 (334)
Q Consensus        81 l~~~~~~~~~~~~~g~~~~~F~r~~~~---------~~~~~~~IwA~G  119 (334)
                      +++..    ..++++.++|+|+|+++.         .+.++++|||+|
T Consensus        81 ~~~~~----~~~~~g~~~~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G  124 (124)
T PF03351_consen   81 IQLLS----GSYSNGTTTCSFTRPLNTGDSQDYDLDSNGTYYVIWAYG  124 (124)
T ss_pred             EEEEE----EEEECCEEEEEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence            55443    257899999999999864         246789999987

It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=99.77  E-value=1.4e-18  Score=152.67  Aligned_cols=134  Identities=19%  Similarity=0.273  Sum_probs=118.8

Q ss_pred             ccchhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhh
Q 019892          152 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI  230 (334)
Q Consensus       152 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~l  230 (334)
                      .+..+++|+++|+++|.++--+++++.|.+|.. ++.-..+|..+|+.+++++++|+...+...+..+. .++++.|+|+
T Consensus        51 ~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i-~NfySLHSWl  129 (245)
T KOG1619|consen   51 PNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGI-ANFYSLHSWL  129 (245)
T ss_pred             cchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-cceeeHHHHH
Confidence            478899999999999999999999999997753 45567899999999999999999998887776543 4799999999


Q ss_pred             hHHHHHHHHHHHHHhh---cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892          231 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY  286 (334)
Q Consensus       231 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~  286 (334)
                      |+.++++..+|.+.||   +.|....+.|....++|+.+|..+++++++|+.+|+.+..
T Consensus       130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~  188 (245)
T KOG1619|consen  130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKL  188 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999996   4677777889999999999999999999999999996543

>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose

Probab=99.42  E-value=6.8e-12  Score=108.57  Aligned_cols=123  Identities=19%  Similarity=0.300  Sum_probs=90.0

Q ss_pred             cEEEEEEEEcCCCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEEeecccccccccCCCCccccCCCceEEEeCcEE
Q 019892           18 HVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMI   97 (334)
Q Consensus        18 ~~i~f~l~a~~~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~~~g~~~p~v~~~~~~l~~~~~~~~~~~~~g~~   97 (334)
                      ++++++|++|.+.||+|+|++  ++|.++.++|+|++++ +++++.|+.+||.+|++...+-.++++.++   ..++++.
T Consensus        40 ~d~i~qi~aP~~~gW~gls~G--g~M~~~~L~vaw~~g~-~Vt~S~R~atg~~~P~~y~g~a~~t~L~gs---~vn~t~~  113 (184)
T cd00241          40 TEFIGELVAPRASGWIGLALG--GAMTNSLLLVAWPNGN-QIVSSTRYATGYTLPDAYTGPATITQLPSS---SVNSTHW  113 (184)
T ss_pred             CCEEEEEeCcCCCCeEEEeec--ccCCCCeEEEEEcCCC-eEEEeEEEecCccCCCccCCCceEEECCCC---cEeCCEE
Confidence            589999999988999999996  6999999999999754 599999999999999765433235555433   4677776


Q ss_pred             EEEEE----EecC-----CCCCcccEEEccCC---CCCC--CCCcccccCCCceeEeecCCCc
Q 019892           98 YMAFQ----LKFE-----NHLRQQPIILAFGS---RYPK--HFHLTHHVDKRTIMFDFSGGSS  146 (334)
Q Consensus        98 ~~~F~----r~~~-----~~~~~~~~IwA~G~---~~~~--~~~l~~H~~~g~~~ldL~~g~~  146 (334)
                      +..|+    ...+     +......++||.++   .+|+  +..|.+|+..|.+.+||..+..
T Consensus       114 t~~~rC~nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd~~G~f~~dl~~A~~  176 (184)
T cd00241         114 KLVFRCQNCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGINLSDAQS  176 (184)
T ss_pred             EEEEEeCCCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceecCCcceeEechhccc
Confidence            65552    2222     11223378899853   2332  5779999988999999985433

It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=99.33  E-value=4e-12  Score=100.51  Aligned_cols=91  Identities=20%  Similarity=0.266  Sum_probs=77.8

Q ss_pred             ccccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchh
Q 019892          150 YVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRG  229 (334)
Q Consensus       150 ~~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~  229 (334)
                      +..+....+|+++|.++|++++|+|++..+ .|+      +.|..+|+++++++++|+.++....++.++ -.+++.|.+
T Consensus        12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~-~~s------r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~-lyp~n~H~k   83 (105)
T PF10348_consen   12 SPHRSALYAHIVLMTLAWVILYPIGLVLGN-ARS------RWHLPVQTVFLVLMILGLFLGSVYNGSTPD-LYPNNAHGK   83 (105)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHH
Confidence            347888999999999999999999998764 454      349999999999999999999887666543 136899999


Q ss_pred             hhHHHHHHHHHHHHHhhcc
Q 019892          230 IGIFILVLSILQILAFFLR  248 (334)
Q Consensus       230 lG~~~~~l~~~Q~~~g~~r  248 (334)
                      +|.++++++++|++.|+++
T Consensus        84 ~g~il~~l~~~q~~~gv~~  102 (105)
T PF10348_consen   84 MGWILFVLMIVQVILGVIL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]

Probab=98.85  E-value=1.1e-08  Score=98.03  Aligned_cols=110  Identities=18%  Similarity=0.297  Sum_probs=84.1

Q ss_pred             ccceEEEEEe-CCCcEEEEEEEEcCCCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEEeecccccccccCCCCccc
Q 019892            5 NQHSLLQYAQ-RDDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPL   83 (334)
Q Consensus         5 ~~~~~l~W~~-~~~~~i~f~l~a~~~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~~~g~~~p~v~~~~~~l~~   83 (334)
                      .+.+.|+|.+ ...+.|.|+|+.. +.+|++||||+.+.|.+||+++.|.+ .+...+.|+|.+....-..|.+|+ .++
T Consensus        42 e~~~~lsW~vdy~~q~i~F~l~~~-t~~~v~fGfSdrG~lanaDivv~~n~-g~~~~~~DayTn~d~qi~~D~QQD-yql  118 (603)
T KOG3568|consen   42 EGKYWLSWSVDYRGQQIAFRLQVR-TAGYVGFGFSDRGALANADIVVGGNA-GGRPYLQDAYTNADGQIKKDAQQD-YQL  118 (603)
T ss_pred             CCcEEEEEeeccccceeEEEEEec-cCCEEEEecCCcCCcccCcEEEEecc-CCchhhhhhhcCCCCceecchhhh-hHH
Confidence            4689999994 5668999999997 88999999999899999999999864 456889999986555444555554 555


Q ss_pred             cCCCceEEEeCcEEEEEEEEecCC--------CCCcccEEEccCCC
Q 019892           84 TNVPPVVAIHGAMIYMAFQLKFEN--------HLRQQPIILAFGSR  121 (334)
Q Consensus        84 ~~~~~~~~~~~g~~~~~F~r~~~~--------~~~~~~~IwA~G~~  121 (334)
                      ...    ..+...+.+.|+|++.+        .+++++++||.-..
T Consensus       119 l~~----~e~~~~~~i~frRkl~TCDp~Dy~i~dgTv~vv~a~~ee  160 (603)
T KOG3568|consen  119 LYA----MENSTHTIIEFRRKLHTCDPNDYSITDGTVRVVWAYLEE  160 (603)
T ss_pred             Hhh----hccCCccEEEEecccCcCCccceeccCCeEEEEEEEecc
Confidence            432    23445677899999874        25689999997443

>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein

Probab=98.26  E-value=1.5e-05  Score=62.36  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=65.5

Q ss_pred             CCCCcEEEEEEcCC-CCeEEEEEEeecccccccccCCCCccccCCCceEEEeCcE--EEEEEEEecCCCCCcccEEEccC
Q 019892           43 MAGSSAMVGWFNKK-GQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAM--IYMAFQLKFENHLRQQPIILAFG  119 (334)
Q Consensus        43 M~gsd~vI~~~~~~-G~~~v~~~~~~g~~~p~v~~~~~~l~~~~~~~~~~~~~g~--~~~~F~r~~~~~~~~~~~IwA~G  119 (334)
                      |.|+.++|++.+++ |.+.+..|.+++|.++   .+++.+.+.-...++++.++.  |+.+.+.+.+  .+..+.+|..|
T Consensus         1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~---l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~n--~t~vnhVWQ~G   75 (101)
T PF04526_consen    1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPS---LQPGPLSFDVSDLSAEYSGGEMTIFATLKLPGN--STSVNHVWQVG   75 (101)
T ss_pred             CCCceEEEEEeCCCCceEEEEEEeecccccc---cccccccccccceEeEEeCCEEEEEEEEEcCCC--CcEEEEEeCcC
Confidence            99999999999988 8899999999999862   233445543233345667774  4555555544  67899999999


Q ss_pred             CCCCCCCCcccccCC-----CceeEee
Q 019892          120 SRYPKHFHLTHHVDK-----RTIMFDF  141 (334)
Q Consensus       120 ~~~~~~~~l~~H~~~-----g~~~ldL  141 (334)
                      +... ++.+..|+..     +..+|||
T Consensus        76 ~~v~-gg~p~~H~~~~~Nl~S~gtldl  101 (101)
T PF04526_consen   76 PSVQ-GGSPQPHPTSGANLQSKGTLDL  101 (101)
T ss_pred             CccC-CCccccCCCCCccccceEEecC
Confidence            9742 6788899753     3445554

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=97.20  E-value=0.0034  Score=54.21  Aligned_cols=91  Identities=18%  Similarity=0.092  Sum_probs=56.2

Q ss_pred             hhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhh-cccCCCCCCcccccchhHHHHH
Q 019892          190 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFF-LRPSKDSKFRRFWNWYHHWFGR  268 (334)
Q Consensus       190 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~-~r~~~~~~~r~~~~~~H~~~G~  268 (334)
                      ..|.-+-...+.++..+..-+....-...+ +-+.++|.+.|+++..++.++....- +.++    +++.++..|.+++.
T Consensus        81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~-~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g----~~~~~R~lHi~lN~  155 (175)
T PF13301_consen   81 DRHYRLGFALLAFMGLGALGGQLGTYRQNG-KLFWSPHLWAGLAVVGLMAFSAALVPQIQKG----NRPWARRLHIYLNS  155 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHHHHcCC-CCccCchHHHHHHHHHHHHHHHHHHHHHccC----CchhHHHHHHHHHH
Confidence            456554444444444333333222111111 13778899999999988888876542 2222    24456679999999


Q ss_pred             HHHHHHHHHHHHhhhhc
Q 019892          269 LALFFASVNIVLGIQIG  285 (334)
Q Consensus       269 ~~~~lg~~~i~~G~~~~  285 (334)
                      +++++-.++..+|....
T Consensus       156 ~~l~Lf~~q~itG~~il  172 (175)
T PF13301_consen  156 LALLLFAWQAITGWRIL  172 (175)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988754

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=96.88  E-value=0.0081  Score=49.27  Aligned_cols=94  Identities=20%  Similarity=0.367  Sum_probs=65.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHH
Q 019892          189 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGR  268 (334)
Q Consensus       189 ~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~  268 (334)
                      |..|..++++++++...--++.....+...+ ......|..+.++.+++.++-...++..+.  .+.++-+...|.++|.
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~-~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl   78 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTK-RALKLLHAILHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGL   78 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHH
Confidence            4679999999976544333333322222111 123568999999888888877777765433  2234556778999999


Q ss_pred             HHHHHHHHHHHHhhhhc
Q 019892          269 LALFFASVNIVLGIQIG  285 (334)
Q Consensus       269 ~~~~lg~~~i~~G~~~~  285 (334)
                      ++++|..+|...|+...
T Consensus        79 ~~~~l~~~q~~~G~~~~   95 (131)
T cd08554          79 ATVLLFLLQFLSGFVLF   95 (131)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999997775

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=96.82  E-value=0.015  Score=47.95  Aligned_cols=93  Identities=18%  Similarity=0.347  Sum_probs=62.7

Q ss_pred             hhhHHHHHHHHHHH-HHHhheeeec-cccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHH
Q 019892          191 LHAIIQLVGFIFGL-ATVLLGIQLY-NKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGR  268 (334)
Q Consensus       191 ~H~~~q~~~~~~~i-~g~~l~~~~~-~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~  268 (334)
                      +|..++.+++.+.. .|+.. .... ............|.++-++.+++.++=.+..+....  .+.++-++-.|.++|.
T Consensus         1 ~H~~lm~~~f~~l~~~~il~-~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~H~~lG~   77 (137)
T PF03188_consen    1 WHPILMTIGFVFLMPEGILA-ARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKN--RNGKPHFKSWHSILGL   77 (137)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-HHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCCCCchhhhhH
Confidence            49999999877655 34433 2221 111111234578999988888777776666654322  2234566789999999


Q ss_pred             HHHHHHHHHHHHhhhhcc
Q 019892          269 LALFFASVNIVLGIQIGY  286 (334)
Q Consensus       269 ~~~~lg~~~i~~G~~~~~  286 (334)
                      +++++...|...|+....
T Consensus        78 ~~~~l~~~Q~~~G~~~~~   95 (137)
T PF03188_consen   78 ATFVLALLQPLLGFFRFF   95 (137)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999988754

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=96.64  E-value=0.022  Score=49.85  Aligned_cols=127  Identities=15%  Similarity=0.098  Sum_probs=83.9

Q ss_pred             CceeEeecCCCccccccccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHH-HHHhheeee
Q 019892          135 RTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGL-ATVLLGIQL  213 (334)
Q Consensus       135 g~~~ldL~~g~~~~~~~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i-~g~~l~~~~  213 (334)
                      ++.++|+++|++++.........                    ..... .....++.|..++.++..+.. +|..++-..
T Consensus         3 ~~~~l~~~~g~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~   61 (191)
T cd08760           3 SSYSLDLASGTSSSGGSPFLLPN--------------------GSSVG-SSDTLIKAHGVLMAIAWGILMPIGALLARYF   61 (191)
T ss_pred             cceEEEeccceeccCCCcccccc--------------------ccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56788999888776433211111                    11111 124567999999999876554 565554221


Q ss_pred             ccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCC
Q 019892          214 YNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAG  288 (334)
Q Consensus       214 ~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~  288 (334)
                      ....+   .....|..+=++.+++.++-.+.++...   .+.+..++-.|.++|.+++++.++|...|+......
T Consensus        62 ~~~~~---~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~  130 (191)
T cd08760          62 LLGDP---VWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPG  130 (191)
T ss_pred             ccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCC
Confidence            11111   2446899988888888887777777653   233456778999999999999999999999776543

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=96.61  E-value=0.032  Score=46.61  Aligned_cols=95  Identities=18%  Similarity=0.287  Sum_probs=65.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHH
Q 019892          188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG  267 (334)
Q Consensus       188 w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G  267 (334)
                      =|..|..+|++|+++...-.++.+.......+ ......|.++.++.+++.++-...-+..+.+  +..+-+.-.|.|+|
T Consensus         6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k-~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlG   82 (143)
T cd08763           6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETK-RSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCG   82 (143)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHH
Confidence            46789999999988666544454432221111 1234689999999988877665544433222  23455678999999


Q ss_pred             HHHHHHHHHHHHHhhhhc
Q 019892          268 RLALFFASVNIVLGIQIG  285 (334)
Q Consensus       268 ~~~~~lg~~~i~~G~~~~  285 (334)
                      .+++++-..|...|+...
T Consensus        83 l~t~~L~~lQ~~~G~~~f  100 (143)
T cd08763          83 ILTFVLYFLQWLIGFSFF  100 (143)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999997664

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=96.47  E-value=0.037  Score=49.30  Aligned_cols=97  Identities=18%  Similarity=0.281  Sum_probs=64.8

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892          187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF  266 (334)
Q Consensus       187 ~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~  266 (334)
                      ..|.+|..+|++|+++...--++.+.......+ ......|..+..+.+++.++-...-+-.+.+..+..+-+...|.|+
T Consensus        22 ~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k-~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwl  100 (214)
T cd08764          22 LQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRK-KRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWL  100 (214)
T ss_pred             ceEeecHHHHHHHHHHHHHHHHHHhccCccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHH
Confidence            568999999999987655433344433222211 1133589999999988877664443333333322344556689999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 019892          267 GRLALFFASVNIVLGIQI  284 (334)
Q Consensus       267 G~~~~~lg~~~i~~G~~~  284 (334)
                      |.++++|-..|...|+..
T Consensus       101 Gl~t~~L~~lQ~~~Gf~~  118 (214)
T cd08764         101 GLTAVILFSLQWVGGFVS  118 (214)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999744

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=96.35  E-value=0.022  Score=46.58  Aligned_cols=95  Identities=24%  Similarity=0.393  Sum_probs=64.6

Q ss_pred             hhhHHHHHHHHHHH-HHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHHHH
Q 019892          191 LHAIIQLVGFIFGL-ATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRL  269 (334)
Q Consensus       191 ~H~~~q~~~~~~~i-~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~  269 (334)
                      +|..++++++++.. .|..+.-......+ .......|..+.++.+++.++=...++...++.  .++.++..|.++|.+
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~-~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~--~~~~~~s~H~~lGl~   77 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRFLS-KPTWFLLHVVLQILALVLGVIGLLAIFISHNES--GIANFYSLHSWLGLA   77 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCccchhHHHHHH
Confidence            48999999875444 44444321011111 112456799999988888877777776543322  235677899999999


Q ss_pred             HHHHHHHHHHHhhhhccCC
Q 019892          270 ALFFASVNIVLGIQIGYAG  288 (334)
Q Consensus       270 ~~~lg~~~i~~G~~~~~~~  288 (334)
                      ++++...|...|+.....+
T Consensus        78 ~~~l~~~Q~~~G~~~~~~~   96 (129)
T smart00665       78 AFVLAGLQWLSGFLRPLPP   96 (129)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            9999999999998876554

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=96.23  E-value=0.02  Score=49.86  Aligned_cols=97  Identities=14%  Similarity=0.335  Sum_probs=66.6

Q ss_pred             ChhhhhhhHHHHHHHHHHHHHHhheeeecccc--ccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchh
Q 019892          186 PLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL--NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYH  263 (334)
Q Consensus       186 ~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H  263 (334)
                      ...|..|..+|.+++++.....++.+...+..  ..+......|.++-.+.+++.++-....+.-  ++.+.++-++-.|
T Consensus        18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~--~~~~~~~hf~s~H   95 (183)
T cd08761          18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYN--KERNGKPHFTSWH   95 (183)
T ss_pred             cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCCccchh
Confidence            45689999999999876665444444322111  1112345789999998888777665444432  2223456677899


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q 019892          264 HWFGRLALFFASVNIVLGIQI  284 (334)
Q Consensus       264 ~~~G~~~~~lg~~~i~~G~~~  284 (334)
                      .++|.+++++...|...|+..
T Consensus        96 ~~lGl~~~~l~~~Q~~~G~~~  116 (183)
T cd08761          96 GILGLVTVILIVLQALGGLAL  116 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999864

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=96.07  E-value=0.12  Score=46.57  Aligned_cols=93  Identities=18%  Similarity=0.331  Sum_probs=60.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHH
Q 019892          188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG  267 (334)
Q Consensus       188 w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G  267 (334)
                      =|.+|..+|++++++...-.++.+......+  ......|..+=.+.+++.++-...- ++.+.+ +.++-+..+|.|+|
T Consensus        46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k--~~~K~iH~~L~~lA~~l~vvGl~av-fk~hn~-~~~~nfySlHSWlG  121 (232)
T PLN02680         46 IFNVHPVLMVIGLVLLNGEAMLAYKTVPGTK--NLKKLVHLTLQFLAFCLSLIGVWAA-LKFHNE-KGIDNFYSLHSWLG  121 (232)
T ss_pred             eEechHHHHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHH-HHhccc-cCccccccHHHHHH
Confidence            4789999999999885544444443222211  1234568877777776665544332 332221 22344556899999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 019892          268 RLALFFASVNIVLGIQI  284 (334)
Q Consensus       268 ~~~~~lg~~~i~~G~~~  284 (334)
                      .+++++-..|...|+..
T Consensus       122 l~t~iL~~lQ~~~Gf~~  138 (232)
T PLN02680        122 LACLFLFSLQWAAGFVT  138 (232)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999866

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=95.73  E-value=0.15  Score=42.71  Aligned_cols=94  Identities=20%  Similarity=0.305  Sum_probs=60.8

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892          187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF  266 (334)
Q Consensus       187 ~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~  266 (334)
                      ..|.+|..+|++++++...--++.+......++  .....|.++=++.+++.++-...-+.-+.  .+..+-+..+|.|+
T Consensus         6 ~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~--~~k~iH~~l~~la~~~~vvGl~avf~~~~--~~~~~~~~SlHSwl   81 (144)
T cd08766           6 LIFNVHPVLMVIGFIFLAGEAILAYKTVPGSRE--VQKAVHLTLHLVALVLGIVGIYAAFKFHN--EVGIPNLYSLHSWL   81 (144)
T ss_pred             ceeeccHHHHHHHHHHHHHHHHHHhhccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCccccccHHHHH
Confidence            468899999999986555434454543222111  23457888877777766555433322222  12234455689999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 019892          267 GRLALFFASVNIVLGIQI  284 (334)
Q Consensus       267 G~~~~~lg~~~i~~G~~~  284 (334)
                      |.+++++-..|...|+..
T Consensus        82 Gl~t~~L~~lQ~~~G~~~   99 (144)
T cd08766          82 GIGTISLFGLQWLFGFVT   99 (144)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999753

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=94.96  E-value=0.082  Score=45.43  Aligned_cols=95  Identities=16%  Similarity=0.117  Sum_probs=65.5

Q ss_pred             hhhhHHHHHHHHHHHHHHhheee--e-ccccccCCCCcccchhhhHHHHHHHHHHHHHhhcc------------------
Q 019892          190 YLHAIIQLVGFIFGLATVLLGIQ--L-YNKLNVKNANISAHRGIGIFILVLSILQILAFFLR------------------  248 (334)
Q Consensus       190 ~~H~~~q~~~~~~~i~g~~l~~~--~-~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r------------------  248 (334)
                      .+|+..-++-+++.+.|+.+...  . .............|..+|++.+++.++..+.++.+                  
T Consensus        10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T PF00033_consen   10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR   89 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence            56887777667777788877532  1 11111112356899999999999999999988877                  


Q ss_pred             cC--CCCCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 019892          249 PS--KDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI  284 (334)
Q Consensus       249 ~~--~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~  284 (334)
                      ..  ++.+.....|...+..-.+++++..+.+.+|+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~  127 (188)
T PF00033_consen   90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM  127 (188)
T ss_dssp             TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  1223445678888999999999999999999988

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=94.72  E-value=1.1  Score=38.70  Aligned_cols=97  Identities=14%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhheeeeccccc-cCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHH
Q 019892          187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLN-VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW  265 (334)
Q Consensus       187 ~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~  265 (334)
                      ..|.+|..+|++++++.-.-.++.+.....+. .+......|..+=.+.+++.++-...-+-.++..  ..+=.-.+|.|
T Consensus        33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlySlHSW  110 (179)
T cd08762          33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYSLHSW  110 (179)
T ss_pred             CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccchhhHHHH
Confidence            37899999999998876544444444222221 1011346788887777777665554443333221  12222347999


Q ss_pred             HHHHHHHHHHHHHHHhhhhc
Q 019892          266 FGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       266 ~G~~~~~lg~~~i~~G~~~~  285 (334)
                      +|.+++++=..|-..|+...
T Consensus       111 lGl~t~~Lf~lQ~~~Gf~~f  130 (179)
T cd08762         111 VGICTVALFTCQWVMGFTSF  130 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998664

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>COG2717 Predicted membrane protein [Function unknown]

Probab=94.53  E-value=0.36  Score=42.71  Aligned_cols=138  Identities=18%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeecccc--c--cCCCCcccchhhhHHHHHH
Q 019892          162 LGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL--N--VKNANISAHRGIGIFILVL  237 (334)
Q Consensus       162 lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~--~~~~~~~~H~~lG~~~~~l  237 (334)
                      ...+.|.+++-.....+|+.+.  +.+.++=+.+-+.+++.++.=+..-+....+.  .  ..+-...+=-.+|++.+++
T Consensus        49 ~~al~fLl~~la~tp~~~~~~~--~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~iafll  126 (209)
T COG2717          49 IWALIFLLVTLAVTPLARLLKQ--PKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIAFLL  126 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHHHHH
Confidence            3344455555455556676663  45556666666666655554332211111110  0  0112334445667766666


Q ss_pred             HHHHHHHhhcccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHH
Q 019892          238 SILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVI  307 (334)
Q Consensus       238 ~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~~~~~~~~~~~  307 (334)
                      ++.-.+--+-.-.++-.  ..|+.+|++ ++.+++||.+=...+...   +..+.+.|+++.+.+++..+
T Consensus       127 l~pLalTS~k~~~rrlG--~rW~~LHrL-vYl~~~L~~lH~~~s~K~---~~~~~vlY~ii~~~lll~R~  190 (209)
T COG2717         127 LIPLALTSFKWVRRRLG--KRWKKLHRL-VYLALILGALHYLWSVKI---DMPEPVLYAIIFAVLLLLRV  190 (209)
T ss_pred             HHHHHHHhhHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHH
Confidence            55444432110001111  668999994 788999998888872221   22345677766655554433

>PLN02351 cytochromes b561 family protein

Probab=94.39  E-value=0.64  Score=42.08  Aligned_cols=93  Identities=15%  Similarity=0.219  Sum_probs=55.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHHH
Q 019892          188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG  267 (334)
Q Consensus       188 w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G  267 (334)
                      .|.+|..+|++++++.-.--++.+......++  .....|..+=.+.+++.++-...   .-+.+++..+=.--.|.|+|
T Consensus        50 ffn~HP~lMviGfi~L~geAILvYR~~~~~~k--~~K~lH~~Lh~~Ali~~vvGl~a---~fh~~~~~i~nlySLHSWlG  124 (242)
T PLN02351         50 YAVLHPLLMVIGFILISGEAILVHRWLPGSRK--TKKSVHLWLQGLALASGVFGIWT---KFHGQDGIVANFYSLHSWMG  124 (242)
T ss_pred             eecccHHHHHHHHHHHHHHHHHHhhcccccch--HHHHHHHHHHHHHHHHHHHHHHH---HHhcccCCccchhHHHHHHH
Confidence            34689999999988655444444443322211  13456766655555554333333   11111111122445799999


Q ss_pred             HHHHHHHHHHHHHhhhhc
Q 019892          268 RLALFFASVNIVLGIQIG  285 (334)
Q Consensus       268 ~~~~~lg~~~i~~G~~~~  285 (334)
                      .+++++=..|-..|+...
T Consensus       125 l~tv~Lf~lQwv~Gf~~F  142 (242)
T PLN02351        125 LICVSLFGAQWLTGFMSF  142 (242)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999997654

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=94.14  E-value=0.83  Score=38.57  Aligned_cols=96  Identities=24%  Similarity=0.391  Sum_probs=58.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhheeeeccccc-cCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892          188 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLN-VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF  266 (334)
Q Consensus       188 w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~  266 (334)
                      =|.+|..+|++++++.-.-.++.+....... .+......|.++=.+.+++.++-...-+.-+..  +..+-+...|.|+
T Consensus        11 ~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~--~~~~~fySlHSwl   88 (153)
T cd08765          11 EFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNA--KNIPNMYSLHSWV   88 (153)
T ss_pred             eeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHH
Confidence            4788999999998874333333332110000 011234567766666555554443322222222  2345566799999


Q ss_pred             HHHHHHHHHHHHHHhhhhc
Q 019892          267 GRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       267 G~~~~~lg~~~i~~G~~~~  285 (334)
                      |.+++++-..|...|+...
T Consensus        89 Gl~t~~l~~lQ~~~Gf~~f  107 (153)
T cd08765          89 GLAAVILYPLQLVLGISVY  107 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998765

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=93.68  E-value=0.57  Score=36.98  Aligned_cols=87  Identities=18%  Similarity=0.260  Sum_probs=56.5

Q ss_pred             ChhhhhhhHHHHHHHHHHH-HHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhH
Q 019892          186 PLWYYLHAIIQLVGFIFGL-ATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHH  264 (334)
Q Consensus       186 ~~w~~~H~~~q~~~~~~~i-~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~  264 (334)
                      +...+.|..+|+++.++.. +|++++... +         ++|--.=++-+++.++-.++|....+...  ..+.+-.|.
T Consensus        15 ~~~l~~Hi~lm~la~~il~Pi~lvL~~~~-s---------r~~~~~q~~~~~l~~~g~~~g~~~~~~~p--~lyp~n~H~   82 (105)
T PF10348_consen   15 RSALYAHIVLMTLAWVILYPIGLVLGNAR-S---------RWHLPVQTVFLVLMILGLFLGSVYNGSTP--DLYPNNAHG   82 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c---------hHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCHHH
Confidence            4568999999999876655 677765432 1         33444433333444444445543222211  134678999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 019892          265 WFGRLALFFASVNIVLGIQI  284 (334)
Q Consensus       265 ~~G~~~~~lg~~~i~~G~~~  284 (334)
                      -+|++++++.+++...|+..
T Consensus        83 k~g~il~~l~~~q~~~gv~~  102 (105)
T PF10348_consen   83 KMGWILFVLMIVQVILGVIL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999754

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>PLN02810 carbon-monoxide oxygenase

Probab=93.40  E-value=1  Score=40.43  Aligned_cols=94  Identities=19%  Similarity=0.292  Sum_probs=61.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhheeeeccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhHHH
Q 019892          187 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF  266 (334)
Q Consensus       187 ~w~~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~  266 (334)
                      .=|.+|..+|++++++.-.--++.+......+  ......|..+=.+.+++.++-...-+-.++. .+ .+=.-.+|.|+
T Consensus        45 ~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k--~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~-~~-i~nlySLHSWl  120 (231)
T PLN02810         45 LIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKK--EVKKLIHLVLHAIALILGIFGICAAFKNHNE-SG-IANLYSLHSWL  120 (231)
T ss_pred             ceeeehHHHHHHHHHHHhhHHHHHhhcccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC-CCceeeHHHHH
Confidence            35789999999998876554445553322111  1245678877777776665554433322322 22 23344699999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 019892          267 GRLALFFASVNIVLGIQI  284 (334)
Q Consensus       267 G~~~~~lg~~~i~~G~~~  284 (334)
                      |.+++++-..|-..|+..
T Consensus       121 Gl~tv~Lf~lQw~~Gf~~  138 (231)
T PLN02810        121 GIGIISLYGIQWIYGFIV  138 (231)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999843

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=91.53  E-value=1.6  Score=39.38  Aligned_cols=94  Identities=21%  Similarity=0.307  Sum_probs=61.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhhe-eee-ccccccCCCCcccchhhhHHHHHHHHHHHHHhhcccCCCCCCcccccchhH
Q 019892          187 LWYYLHAIIQLVGFIFGLATVLLG-IQL-YNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHH  264 (334)
Q Consensus       187 ~w~~~H~~~q~~~~~~~i~g~~l~-~~~-~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~  264 (334)
                      .=|.+|..+|++|+++. -|.++- +.. ....+.  -..-.|..+=++.+++.++-...-+..++..+  -.=+-.+|.
T Consensus        53 ~~fnlHP~lMviGfI~l-~GeAiL~YR~~r~~~k~--~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~--i~NfySLHS  127 (245)
T KOG1619|consen   53 KEFNLHPVLMVIGFIYL-QGEAILIYRVFRYTSKK--VSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG--IANFYSLHS  127 (245)
T ss_pred             hhcCcchHHHHHHHHHh-ccceeeeeehhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ccceeeHHH
Confidence            45789999999998853 354443 222 122221  23467888888888877766555444443322  122335899


Q ss_pred             HHHHHHHHHHHHHHHHhhhhc
Q 019892          265 WFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       265 ~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      |+|.+++++=.+|-..|+.-+
T Consensus       128 WlGl~~v~ly~~Q~v~GF~tf  148 (245)
T KOG1619|consen  128 WLGLCVVILYSLQWVFGFFTF  148 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999997754

>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function

Probab=91.34  E-value=0.75  Score=36.08  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=27.3

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 019892          256 RRFWNWYHHWFGRLALFFASVNIVLGIQIGYA  287 (334)
Q Consensus       256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~  287 (334)
                      |+.....|+++||+-.++..+....|+.+...
T Consensus         2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~   33 (103)
T PF10067_consen    2 RRKGPRLHRWLGRVYVAAMLISALSALFIAFY   33 (103)
T ss_pred             CCCcccHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            55667899999999999999999999888654

>PF13172 PepSY_TM_1: PepSY-associated TM helix

Probab=90.81  E-value=0.28  Score=30.29  Aligned_cols=31  Identities=29%  Similarity=0.770  Sum_probs=25.9

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892          256 RRFWNWYHHWFGRLALFFASVNIVLGIQIGY  286 (334)
Q Consensus       256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~  286 (334)
                      |+.+..+|+++|..+.+.-.+-+.+|+.+..
T Consensus         2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~~   32 (34)
T PF13172_consen    2 RKFWRKIHRWLGLIAAIFLLLLALTGALLNF   32 (34)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5677789999999999999999999887653

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=89.97  E-value=3.5  Score=35.66  Aligned_cols=62  Identities=21%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             CcccchhhhHHHHHHHHHHHHHhhc---ccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 019892          223 NISAHRGIGIFILVLSILQILAFFL---RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGN  289 (334)
Q Consensus       223 ~~~~H~~lG~~~~~l~~~Q~~~g~~---r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~  289 (334)
                      ....|..+|.++++++.+-.+.|..   +...     +++..-|-|.|.++..|=.++..+.-.+....+
T Consensus        79 ~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~-----~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~  143 (175)
T PF13301_consen   79 ARDRHYRLGFALLAFMGLGALGGQLGTYRQNG-----KLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNR  143 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcchHHHHHcCC-----CCccCchHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            5688999999999999998888743   3222     255667999999999999999999888876444

>PRK11513 cytochrome b561; Provisional

Probab=89.40  E-value=5  Score=34.61  Aligned_cols=61  Identities=20%  Similarity=0.149  Sum_probs=37.2

Q ss_pred             CcccchhhhHHHHHHHHHHHHHhhcccCCCCCCc-ccc-cchhHHHHHHHHHHHHHHHHHhhh
Q 019892          223 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFR-RFW-NWYHHWFGRLALFFASVNIVLGIQ  283 (334)
Q Consensus       223 ~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~~~~~r-~~~-~~~H~~~G~~~~~lg~~~i~~G~~  283 (334)
                      ....|..+|+++++++++-.+..+..+.+..... +.| +..=+..-.++|++-++...+|+.
T Consensus        41 ~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~  103 (176)
T PRK11513         41 INMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLV  103 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999987543321111 112 111112225566666666666654

>COG5658 Predicted integral membrane protein [Function unknown]

Probab=88.37  E-value=3.8  Score=36.21  Aligned_cols=87  Identities=18%  Similarity=0.242  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHHHHHhh-cccC-C----------CCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHH
Q 019892          230 IGIFILVLSILQILAFF-LRPS-K----------DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGF  297 (334)
Q Consensus       230 lG~~~~~l~~~Q~~~g~-~r~~-~----------~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~  297 (334)
                      .|++.-.++++-.++.+ ++|+ +          ..+.+..|+..|+++|-.+++.+.+....+........-+...+..
T Consensus         4 ~~lv~~gLvilagils~v~yp~~Pn~v~~~r~~~~~~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~   83 (204)
T COG5658           4 LGLVLAGLVILAGILSIVLYPKLPNEVVGHRTVDSSPDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALF   83 (204)
T ss_pred             cccHHHHHHHHHHHHHHHcCCCCCccceeeecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHH
Confidence            34455555555555543 3444 2          2344677999999999999999999999988777665444444444


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 019892          298 LLAVVLLAVIVLETLSWMK  316 (334)
Q Consensus       298 ~~~~~~~~~~~le~~~~~~  316 (334)
                      ..++++...+.+.+..+..
T Consensus        84 ~~~~Il~li~~ls~~l~~~  102 (204)
T COG5658          84 AAVLILFLILLLSAILVAL  102 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            3433333333333333333

>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana

Probab=87.58  E-value=2.1  Score=33.96  Aligned_cols=50  Identities=36%  Similarity=0.460  Sum_probs=32.9

Q ss_pred             hhHHHHHHHHHHHHHhhcccCCC----CCCcccccchhHHHHHHHHHHHHHHHHH
Q 019892          230 IGIFILVLSILQILAFFLRPSKD----SKFRRFWNWYHHWFGRLALFFASVNIVL  280 (334)
Q Consensus       230 lG~~~~~l~~~Q~~~g~~r~~~~----~~~r~~~~~~H~~~G~~~~~lg~~~i~~  280 (334)
                      +|.+.++++.++.+.+ .|+..-    .........+|+++|+.+++++.+=...
T Consensus         1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~   54 (125)
T PF01794_consen    1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGVL   54 (125)
T ss_pred             CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4777777888888777 554321    1111223459999999999999876543

This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane

>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit

Probab=87.02  E-value=7.5  Score=34.08  Aligned_cols=27  Identities=15%  Similarity=0.018  Sum_probs=22.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892          260 NWYHHWFGRLALFFASVNIVLGIQIGY  286 (334)
Q Consensus       260 ~~~H~~~G~~~~~lg~~~i~~G~~~~~  286 (334)
                      |..-+..-.+++++..+.+.+|+.+..
T Consensus       113 n~~~k~~~~~l~~~~~~~~lTG~~~~~  139 (211)
T TIGR02125       113 NPLQFVAYFGFIVLILFMILTGLALYY  139 (211)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            667777788888899999999988764

This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.

>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices

Probab=86.15  E-value=10  Score=31.26  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=23.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHH
Q 019892          158 NHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLA  205 (334)
Q Consensus       158 ~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~  205 (334)
                      ....++.++..+++ .|...+|--|      .+.|+-+|..++++..+
T Consensus         7 l~a~~~~~s~~ll~-~g~~~Ir~~~------~~~Hr~~Ml~a~~ls~l   47 (133)
T PF04238_consen    7 LNAVLNAISAVLLL-IGWYFIRRGR------IKLHRKLMLTAFVLSAL   47 (133)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHhCC------HHHHHHHHHHHHHHHHH
Confidence            44566666665555 5555554211      36788888776665543

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=85.94  E-value=3.7  Score=34.96  Aligned_cols=127  Identities=15%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhhh---ccC---CCChhhhhhhHHHHHHHHHHHHHHhheeee----------------
Q 019892          156 KKNHGALGMIGWGIILPVGAIIPRY---FKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQL----------------  213 (334)
Q Consensus       156 ~~~Hg~lm~~aw~~l~p~gil~aR~---~k~---~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~----------------  213 (334)
                      +..| +++++++.+++..|..+...   ...   .....+.+|..+-.+-+++.+.=+...+..                
T Consensus         9 R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T PF00033_consen    9 RLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQ   87 (188)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHH
Confidence            4455 47778888888888877521   111   123567889888766544444333333332                


Q ss_pred             --cc---ccccCCCCcccchhhhHHHHHHHHHHHHHhhcc--------cCC---CCCCcccccchhHHHHHHHHHHHHHH
Q 019892          214 --YN---KLNVKNANISAHRGIGIFILVLSILQILAFFLR--------PSK---DSKFRRFWNWYHHWFGRLALFFASVN  277 (334)
Q Consensus       214 --~~---~~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r--------~~~---~~~~r~~~~~~H~~~G~~~~~lg~~~  277 (334)
                        ..   ..+.....+...+..-.++..+++++++.|+..        +..   ..........+|.+.+.+++++-.+=
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~H  167 (188)
T PF00033_consen   88 YRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIH  167 (188)
T ss_dssp             HHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00   011112355667778888888899999999765        111   11224556788998888888777666


Q ss_pred             HHHhhh
Q 019892          278 IVLGIQ  283 (334)
Q Consensus       278 i~~G~~  283 (334)
                      ++.++.
T Consensus       168 i~~a~~  173 (188)
T PF00033_consen  168 IYAAIF  173 (188)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>PF13789 DUF4181: Domain of unknown function (DUF4181)

Probab=84.71  E-value=5.5  Score=31.59  Aligned_cols=65  Identities=12%  Similarity=0.084  Sum_probs=41.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 019892          257 RFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTT  323 (334)
Q Consensus       257 ~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~~~~~~~~~y~~~~~~~~~~~~~le~~~~~~~r~~~~~  323 (334)
                      ...|..|++.-+.+++..++.++.+..+......  ..+..+..+.++....-.+-.|+.+|+.|+-
T Consensus        25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~ra~mEWKy~resK~y   89 (110)
T PF13789_consen   25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIFRFF--YPYILIFLFLIILFCFRAFMEWKYDRESKEY   89 (110)
T ss_pred             CchhHHHHHHHHHhhhhHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence            5568899999999999999999777666543311  1122223333333333334459999988863

>PF13706 PepSY_TM_3: PepSY-associated TM helix

Probab=84.45  E-value=1.2  Score=28.15  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=22.1

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhh
Q 019892          256 RRFWNWYHHWFGRLALFFASVNIVLGIQI  284 (334)
Q Consensus       256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~  284 (334)
                      |+.+..+|+|+|.++-++-.+-+++|..+
T Consensus         1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~   29 (37)
T PF13706_consen    1 RRILRKLHRWLGLILGLLLFVIFLTGAVM   29 (37)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            45667789999988888888888877544

>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently

Probab=83.80  E-value=7.5  Score=33.01  Aligned_cols=94  Identities=13%  Similarity=0.059  Sum_probs=57.8

Q ss_pred             hhhhHHHHHHHHHHHHHHhheeeeccccccCCCC--cccchhhhHHHHHHHHHHHHHh---------------------h
Q 019892          190 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNAN--ISAHRGIGIFILVLSILQILAF---------------------F  246 (334)
Q Consensus       190 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~--~~~H~~lG~~~~~l~~~Q~~~g---------------------~  246 (334)
                      .+|+..-+.-+++.+.|+.+-......... +..  ...|.++|++++.+.++=.+..                     .
T Consensus         8 ~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~-~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (182)
T PF01292_consen    8 ILHWLNALSFIALIATGLWIHFPPPGLYFG-DFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFL   86 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccc-ccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence            468777776677777777664433222111 111  6789999999998887766655                     1


Q ss_pred             cccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892          247 LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY  286 (334)
Q Consensus       247 ~r~~~~~~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~  286 (334)
                      .+.+  .+....++..-+..-.+.+++..+.+.+|+.++.
T Consensus        87 ~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~  124 (182)
T PF01292_consen   87 LRGK--PPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWF  124 (182)
T ss_pred             hcCC--CCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  1122334555555777788888888888988743

This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane

>COG3038 CybB Cytochrome B561 [Energy production and conversion]

Probab=82.66  E-value=4.4  Score=35.21  Aligned_cols=61  Identities=25%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHhheeeeccc-cccCCCCcccchhhhHHHHHHHHHHHHHhhcccCC
Q 019892          189 YYLHAIIQLVGFIFGLATVLLGIQLYNK-LNVKNANISAHRGIGIFILVLSILQILAFFLRPSK  251 (334)
Q Consensus       189 ~~~H~~~q~~~~~~~i~g~~l~~~~~~~-~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r~~~  251 (334)
                      ..+|+..-++-+...++|...+.....+ ...  .....|..+|+.++.++++-.+..+.-|.+
T Consensus        13 i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~--~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p   74 (181)
T COG3038          13 IALHWLMALLVIGAFALGELMGFLPRGPGLYF--LLYELHKSIGILVLALMVLRLLWRLRNPAP   74 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4678877666555555666665544433 111  367899999999999999999998875444

>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit

Probab=80.26  E-value=28  Score=30.58  Aligned_cols=30  Identities=13%  Similarity=0.021  Sum_probs=26.3

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 019892          256 RRFWNWYHHWFGRLALFFASVNIVLGIQIG  285 (334)
Q Consensus       256 r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~  285 (334)
                      ...+|...+..-.++++++.+.+.+|+.++
T Consensus       101 ~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~  130 (204)
T TIGR01583       101 AGKYNAGQKSWYWILVLGGFLMIITGIFMW  130 (204)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355899999999999999999999999987

NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.

>TIGR01191 ccmC heme exporter protein CcmC

Probab=80.17  E-value=20  Score=31.29  Aligned_cols=66  Identities=17%  Similarity=0.138  Sum_probs=47.5

Q ss_pred             ccccchhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhhHHHHHHHHHHHHHHhheeeecc
Q 019892          150 YVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYN  215 (334)
Q Consensus       150 ~~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~w~~~H~~~q~~~~~~~i~g~~l~~~~~~  215 (334)
                      |+..+.+..|.-.+.++.+.+.-.++....|+..+++.+-.+-..+-.+|+++..+|++.|....+
T Consensus         7 g~~~ri~yiHVp~a~~~~~~~~~~~~~s~~yL~~~~~~~D~la~~~a~iGf~f~tl~LitGaiWak   72 (184)
T TIGR01191         7 GASVRIMYVHVPAAWMAIGVYIMMAIASFIFLVWKHPLSDLAAKAAAPIGAVFTLIALVTGSLWGK   72 (184)
T ss_pred             CcceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457789999999999998888777777777765444444444444455788888888888876544

This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 41/244 (16%), Positives = 84/244 (34%), Gaps = 66/244 (27%)

Query: 15  RDD-HVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKG----QPRIKQYYLQGT 69
               H+ TI+LS I    W  +  S   ++          +K      QP+     +   
Sbjct: 382 PPSAHIPTILLSLI----WFDVIKSDVMVVVNK------LHKYSLVEKQPKESTISIPS- 430

Query: 70  RSSQVIHDKGELPLTNVPPVVAIHGAMI--YMAFQLKFENHLRQQPIILAFGSRYPKHFH 127
                I+ + ++ L N     A+H +++  Y      F++     P +     +Y  + H
Sbjct: 431 -----IYLELKVKLENEY---ALHRSIVDHY-NIPKTFDSDDLIPPYL----DQY-FYSH 476

Query: 128 LTHHVDK----------RTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAII 177
           + HH+            R +  DF        ++   +K  H +      G IL     +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFR-------FL--EQKIRHDSTAWNASGSILNTLQQL 527

Query: 178 PRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLG------IQLYNKLNVKNANI--SA 226
             Y  +    DP   Y   +  ++ F+  +   L+       +++   L  ++  I   A
Sbjct: 528 KFYKPYICDNDP--KYERLVNAILDFLPKIEENLICSKYTDLLRI--ALMAEDEAIFEEA 583

Query: 227 HRGI 230
           H+ +
Sbjct: 584 HKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
1d7b_A	186	Cellobiose dehydrogenase; B-type cytochrome, Met/H	99.68
1kqf_C	217	FDH-N gamma, formate dehydrogenase, nitrate-induci	84.61
4gd3_A	235	NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-	83.87

>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*

Probab=99.68  E-value=4.2e-16  Score=134.61  Aligned_cols=136  Identities=15%  Similarity=0.209  Sum_probs=104.0

Q ss_pred             ccceEEEEEeC-------CCcEEEEEEEEcCCCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEEeecccccccccC
Q 019892            5 NQHSLLQYAQR-------DDHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHD   77 (334)
Q Consensus         5 ~~~~~l~W~~~-------~~~~i~f~l~a~~~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~~~g~~~p~v~~~   77 (334)
                      ..++.+.|..+       +.++++|+|++|.+.||+|||++  ++|.|++|+|+|+++ |++++++|+.+||.+|++...
T Consensus        22 ~~~~~f~~alP~~~~s~~~s~d~~~qi~~p~~~gW~g~g~G--g~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~~   98 (186)
T 1d7b_A           22 VHDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIALG--GAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYTG   98 (186)
T ss_dssp             TTTEEEEEEBCCCCSSSCCCCCEEEEEEEETTCCEEEEETT--SSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECCS
T ss_pred             CCCEEEEEECCCcccCCCCCccEEEEEEccCCCCEEEEecC--CCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccCC
Confidence            45677777742       12579999999978899999996  599999999999975 889999999999999984333


Q ss_pred             CCCccccCCCceEEEeCcEEEEEEEEe----c-CC----CCCcccEEEccCCCCCC-----CCCcccccCCCceeEeecC
Q 019892           78 KGELPLTNVPPVVAIHGAMIYMAFQLK----F-EN----HLRQQPIILAFGSRYPK-----HFHLTHHVDKRTIMFDFSG  143 (334)
Q Consensus        78 ~~~l~~~~~~~~~~~~~g~~~~~F~r~----~-~~----~~~~~~~IwA~G~~~~~-----~~~l~~H~~~g~~~ldL~~  143 (334)
                      +-+++++.++   .++++++++.|+++    . ..    ......++||+++..|.     +..+.+|+.+|.+++||..
T Consensus        99 ~~~~~lL~gs---~vn~t~~~~~f~C~~C~~w~~~g~~~~ts~~~~iwA~~~~~p~~~~~~~a~~~~H~~~G~~~~dL~~  175 (186)
T 1d7b_A           99 TATLTTLPET---TINSTHWKWVFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGIDYST  175 (186)
T ss_dssp             SCEEEECTTC---EECSSEEEEEEEEETTTBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSEEEEEEEEGGG
T ss_pred             CceEEEcccc---cEeCCEEEEEEEeCCCcccCCCCccccCCCCeEEEEECCCCCCCCCCCcccchhhhCcceEEEEccc
Confidence            3346666553   47889999999885    1 10    11223899999876432     4689999999999999996


Q ss_pred             CCc
Q 019892          144 GSS  146 (334)
Q Consensus       144 g~~  146 (334)
                      +..
T Consensus       176 a~~  178 (186)
T 1d7b_A          176 AHS  178 (186)
T ss_dssp             CBC
T ss_pred             ccc
Confidence            543

>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*

Probab=84.61  E-value=2.1  Score=36.68  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=54.4

Q ss_pred             hhhhHHHHHHHHHHHHHHhheeeecc---c-cccCCCCcccchhhhHHHHHHHHHHHHHhhcc---cCCCC---------
Q 019892          190 YLHAIIQLVGFIFGLATVLLGIQLYN---K-LNVKNANISAHRGIGIFILVLSILQILAFFLR---PSKDS---------  253 (334)
Q Consensus       190 ~~H~~~q~~~~~~~i~g~~l~~~~~~---~-~~~~~~~~~~H~~lG~~~~~l~~~Q~~~g~~r---~~~~~---------  253 (334)
                      -+|+..-++-+++.+.|+.+.+-...   + .+........|..+|+++++++++-.+ .+.|   |.+..         
T Consensus        16 ~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~~~~~~~~~~~~~   94 (217)
T 1kqf_C           16 ACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFV-RFVHHNIPDKKDIPWLLNIVE   94 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGSCCCGGGHHHHHSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHH
Confidence            45666555555555566654321000   0 000001346799999888887776443 2222   22110         


Q ss_pred             ---------CCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 019892          254 ---------KFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY  286 (334)
Q Consensus       254 ---------~~r~~~~~~H~~~G~~~~~lg~~~i~~G~~~~~  286 (334)
                               +....+|...+..=.+++++..+.+.+|+.+..
T Consensus        95 yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~~~~  136 (217)
T 1kqf_C           95 VLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWR  136 (217)
T ss_dssp             HHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     112346677777778888889999999998875

>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}

Probab=83.87  E-value=3  Score=36.23  Aligned_cols=58  Identities=16%  Similarity=0.162  Sum_probs=34.0

Q ss_pred             hhhhHHHHHHHHHHHHHHhheeeec---cccccC---CCCcccchhhhHHHHHHHHHHHHHhhc
Q 019892          190 YLHAIIQLVGFIFGLATVLLGIQLY---NKLNVK---NANISAHRGIGIFILVLSILQILAFFL  247 (334)
Q Consensus       190 ~~H~~~q~~~~~~~i~g~~l~~~~~---~~~~~~---~~~~~~H~~lG~~~~~l~~~Q~~~g~~  247 (334)
                      -+|+..-++-+++.+.|+.+.....   ++....   ......|..+|+++++++++-.+.++.
T Consensus        20 ~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~   83 (235)
T 4gd3_A           20 IWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV   83 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677665555555556665543211   110000   001247999999999999998888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1pl3a_	186	b.1.9.1 (A:) Cytochrome domain of cellobiose dehyd	1e-09

>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 186

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Cytochrome domain of cellobiose dehydrogenase
domain: Cytochrome domain of cellobiose dehydrogenase
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 14/130 (10%)

Query: 29  TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPP 88
            + W+G+     G       +V W N   Q      +  G            L       
Sbjct: 53  ASKWIGIALG--GAHNNDLLLVAWAN-GNQIVSSTRWATGYVQPTAYTGTATLTTLPETT 109

Query: 89  VVAIHGAMIYMAF------QLKFENHLRQQPIILAFGSRYP-----KHFHLTHHVDKRTI 137
           + + H   ++              +   Q  +  AF +             + H D    
Sbjct: 110 INSTHWKWVFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFF 169

Query: 138 MFDFSGGSSS 147
             D+S   S+
Sbjct: 170 GIDYSTAHSA 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1pl3a_	186	Cytochrome domain of cellobiose dehydrogenase {Fun	99.72

>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Cytochrome domain of cellobiose dehydrogenase
domain: Cytochrome domain of cellobiose dehydrogenase
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.72  E-value=2.3e-17  Score=140.74  Aligned_cols=125  Identities=16%  Similarity=0.184  Sum_probs=99.5

Q ss_pred             CcEEEEEEEEcCCCcEEEEEECCCCCCCCCcEEEEEEcCCCCeEEEEEEeecccccccccCCCCccccCCCceEEEeCcE
Q 019892           17 DHVMTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAM   96 (334)
Q Consensus        17 ~~~i~f~l~a~~~~gWvaiGfs~~~~M~gsd~vI~~~~~~G~~~v~~~~~~g~~~p~v~~~~~~l~~~~~~~~~~~~~g~   96 (334)
                      +.++.+++++|.+.||+||||+  ++|.|++|+|+|++ +|++++++|+.+||.+|++..++..+..+..+   ..++++
T Consensus        41 ~~d~i~qi~ap~~~GWvgiG~g--g~M~gs~l~V~w~~-~~~v~~S~R~atG~~~P~~~~~~~~~~~l~~s---~vn~t~  114 (186)
T d1pl3a_          41 STEFIGEVVAPIASKWIGIALG--GAHNNDLLLVAWAN-GNQIVSSTRWATGYVQPTAYTGTATLTTLPET---TINSTH  114 (186)
T ss_dssp             CCCEEEEEEEETTCCEEEEETT--SSSSSSCEEEEEEE-TTEEEEEEEECSTTSCCEECCSSCEEEECTTC---EECSSE
T ss_pred             CcCEEEEEeCCCCCcEEEEEcC--CCCCCCcEEEEEec-CCeEEEEEEEecceeCCcccCCCceEEEccCc---eEECCE
Confidence            3589999999989999999997  69999999999997 57899999999999999865544445554443   578888


Q ss_pred             EEEEEEEecCC---------CCCcccEEEccCCCCC---C--CCCcccccCCCceeEeecCCCcc
Q 019892           97 IYMAFQLKFEN---------HLRQQPIILAFGSRYP---K--HFHLTHHVDKRTIMFDFSGGSSS  147 (334)
Q Consensus        97 ~~~~F~r~~~~---------~~~~~~~IwA~G~~~~---~--~~~l~~H~~~g~~~ldL~~g~~~  147 (334)
                      ++.+|++..-.         ......+|||+++..|   +  +..+.+|+.+|.+++||..+..+
T Consensus       115 ~~~~f~C~~C~~w~~~~~~~~~~~~~~iwA~~~~~p~~~~~~~~~i~~H~~~G~f~~dl~~a~~~  179 (186)
T d1pl3a_         115 WKWVFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGIDYSTAHSA  179 (186)
T ss_dssp             EEEEEEEETCSBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSEEEEEEEEGGGCBCT
T ss_pred             EEEEEEEeccccccCCCcccCCCceEEEEEECCCCCCCCCCCccCcceecCCceEEEEcccCccc
Confidence            88899775321         2456789999987643   1  57899999999999999876544