Citrus Sinensis ID: 019899
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 334 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GYY0 | 495 | Probable aminotransferase | yes | no | 1.0 | 0.674 | 0.670 | 1e-139 | |
| Q9LQ10 | 557 | Probable aminotransferase | no | no | 1.0 | 0.599 | 0.613 | 1e-128 | |
| Q9T065 | 469 | 1-aminocyclopropane-1-car | no | no | 0.991 | 0.705 | 0.498 | 1e-102 | |
| P37821 | 473 | 1-aminocyclopropane-1-car | N/A | no | 0.979 | 0.691 | 0.475 | 1e-99 | |
| Q9STR4 | 447 | 1-aminocyclopropane-1-car | no | no | 0.991 | 0.740 | 0.492 | 3e-99 | |
| Q00257 | 475 | 1-aminocyclopropane-1-car | N/A | no | 0.967 | 0.68 | 0.495 | 1e-98 | |
| Q42881 | 469 | 1-aminocyclopropane-1-car | N/A | no | 0.994 | 0.707 | 0.491 | 2e-97 | |
| Q9M2Y8 | 470 | 1-aminocyclopropane-1-car | no | no | 0.991 | 0.704 | 0.495 | 3e-97 | |
| Q43309 | 474 | 1-aminocyclopropane-1-car | no | no | 0.988 | 0.696 | 0.480 | 1e-96 | |
| Q37001 | 470 | 1-aminocyclopropane-1-car | no | no | 0.991 | 0.704 | 0.486 | 2e-96 |
| >sp|Q8GYY0|1A112_ARATH Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 224/334 (67%), Positives = 281/334 (84%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
A FMS+++G VSFDPS +V+TAG TPA+E+L FCLADHGNA L+P+PYYPGFDRDI+F
Sbjct: 161 FADFMSRIMGGNVSFDPSNMVITAGGTPAIEVLAFCLADHGNAFLIPTPYYPGFDRDIKF 220
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVELIPVHCRS+DNF +++AL+QA NQARKRG KV GIL NP+NPVGNI+ RETL
Sbjct: 221 RTGVELIPVHCRSSDNFTVTVSALEQALNQARKRGSKVSGILFSNPSNPVGNILSRETLC 280
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
++L FA+EKNIHVISDEI+ GS++G++EFVSMAEI + E DK RVHIIYGLSKDLS+PG
Sbjct: 281 DILRFAQEKNIHVISDEIFAGSVYGDKEFVSMAEIAGSGEFDKTRVHIIYGLSKDLSIPG 340
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR GVIYS++E V+ AAKKL RF S+ QR+LIS+LSD +FI+ Y+ +++RI+ +
Sbjct: 341 FRAGVIYSFHEDVVNAAKKLMRFSSVPVLVQRILISLLSDVRFIEGYMAAHRQRIRDKHI 400
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
FV GLKQLGI C+ES GLYCW DMS L+ SYSEKGELEL++KLL +AKIN TPG+AC+
Sbjct: 401 RFVEGLKQLGIPCAESGGGLYCWVDMSSLLTSYSEKGELELFEKLLTVAKINATPGTACY 460
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
CIEPGWFRCCFT+L EDIP+++ERI+++AE+ +
Sbjct: 461 CIEPGWFRCCFTALADEDIPVIMERIRQLAESFR 494
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Probable aminotransferase. Does not have 1-aminocyclopropane-1-carboxylate synthase (ACS) activity, suggesting that it is not involved in ethylene biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|Q9LQ10|1A110_ARATH Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/336 (61%), Positives = 274/336 (81%), Gaps = 2/336 (0%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+AGFM++ +V+FDPSQ+VLT+GA+ A+EIL FCLAD GNA LVP+P PG+DRD+++
Sbjct: 219 VAGFMTEATKNSVTFDPSQLVLTSGASSAIEILSFCLADSGNAFLVPTPCSPGYDRDVKW 278
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGV++I V CRS DNF S+ LD+AF QA+KRGV++RGI+I NP+NP+G+++ RE LY
Sbjct: 279 RTGVDIIHVPCRSADNFNMSMVVLDRAFYQAKKRGVRIRGIIISNPSNPMGSLLSRENLY 338
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAEILEAEE-VDKDRVHIIYGLSKDLSL 178
LLDFARE+NIH+IS+EI+ GS+ G E EFVSMAEI++ EE +D++RVHI+Y LSKDLS
Sbjct: 339 ALLDFARERNIHIISNEIFAGSVHGEEGEFVSMAEIVDTEENIDRERVHIVYDLSKDLSF 398
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238
G R+ IYS+NESVL+A++KLT +S+PTQ LLIS +S+ K +Q +++TN++R++ +
Sbjct: 399 RGLRSAAIYSFNESVLSASRKLTTLSPVSSPTQHLLISAISNPKNVQRFVKTNRQRLQSI 458
Query: 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
Y V GLK+LGI C+ S+ G YCWADM GLI SYSEKGE+ELW+KLLNI KINV PGS
Sbjct: 459 YTELVEGLKELGIECTRSNGGFYCWADMRGLISSYSEKGEIELWNKLLNIGKINVIPGSC 518
Query: 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
CHCIEPGWFR CF++L+ D+P+V+ RI+KV ETCK
Sbjct: 519 CHCIEPGWFRICFSNLSERDVPVVMNRIRKVCETCK 554
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Probable aminotransferase. Does not have 1-aminocyclopropane-1-carboxylate synthase (ACS) activity, suggesting that it is not involved in ethylene biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q9T065|1A18_ARATH 1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/335 (49%), Positives = 242/335 (72%), Gaps = 4/335 (1%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MA FMS+ G VSF+P+++VLTAGATPA E L FCLAD G+A L+P+PYYPGFDRD+++
Sbjct: 95 MADFMSENRGNRVSFNPNKLVLTAGATPANETLMFCLADPGDAFLLPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTG E++P+ C+S + F + AL++A+ QA+K +KV+G+LI NP+NP+G R L
Sbjct: 155 RTGAEIVPIQCKSANGFRITKVALEEAYEQAQKLNLKVKGVLITNPSNPLGTTTTRTELN 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK----DRVHIIYGLSKDL 176
LLDF K IH+ISDEIY G++F N F+S+ E+L+ +++ DRVHI+Y LSKDL
Sbjct: 215 HLLDFISRKKIHLISDEIYSGTVFTNPGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDL 274
Query: 177 SLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236
LPGFR GVIYS ++ V++AA K++ F IS+ TQ LL ++LSD F + YLE N+ R+K
Sbjct: 275 GLPGFRVGVIYSNDDFVVSAATKMSSFGLISSQTQYLLSALLSDKTFTKNYLEENQIRLK 334
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296
+ V+GL+ GI C +S+AGL+CW DM L+ S + + E+ELW K++ K+N++PG
Sbjct: 335 NRHKKLVSGLEAAGIECLKSNAGLFCWVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPG 394
Query: 297 SACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
S+CHC EPGWFR CF +L+ E + + ++R+++ +
Sbjct: 395 SSCHCNEPGWFRVCFANLSEETLKVALDRLKRFVD 429
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P37821|1A1C_MALDO 1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 158/332 (47%), Positives = 234/332 (70%), Gaps = 5/332 (1%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
M FM+++ G V+FDP+ +VLTAGAT A E FCLAD G A+L+P+PYYPGFDRD+++
Sbjct: 95 MVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE++P+HC S++ F + TAL++A+ +A KR ++V+G+L+ NP+NP+G + R LY
Sbjct: 155 RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELY 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD-----RVHIIYGLSKD 175
LL F +K IH+ISDEIY G+ F + F+S+ E+L+ D++ RVH++Y LSKD
Sbjct: 215 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKD 274
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS ++ V+AAA K++ F +S+ TQ LL +MLSD K + Y+ N +R+
Sbjct: 275 LGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL 334
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K+ V+GL++ GI C +AGL+CW DM L+ S + + E+ELW K++ +N++P
Sbjct: 335 KQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISP 394
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQ 327
GS+CHC EPGWFR CF +L + L ++R++
Sbjct: 395 GSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Malus domestica (taxid: 3750) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9STR4|1A17_ARATH 1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 164/333 (49%), Positives = 242/333 (72%), Gaps = 2/333 (0%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MA FM Q+ G FDP +IVLTAGAT A E+L F LAD +ALLVP+PYYPGFDRD+R+
Sbjct: 110 MASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPNDALLVPTPYYPGFDRDLRW 169
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGV+++P+HC S+++F + AL+ A+ AR ++VRG+LI NP+NP+G + ++ L
Sbjct: 170 RTGVKIVPIHCDSSNHFQITPEALESAYQTARDANIRVRGVLITNPSNPLGATVQKKVLE 229
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA-EEVD-KDRVHIIYGLSKDLSL 178
+LLDF KNIH++SDEIY GS+F EF S+AEI+E ++V K+RVHI+Y LSKDL L
Sbjct: 230 DLLDFCVRKNIHLVSDEIYSGSVFHASEFTSVAEIVENIDDVSVKERVHIVYSLSKDLGL 289
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238
PGFR G IYSYN++V+ A++++ F +S+ TQ +L SMLSD +F ++Y+ N+ R+++
Sbjct: 290 PGFRVGTIYSYNDNVVRTARRMSSFTLVSSQTQHMLASMLSDEEFTEKYIRINRERLRRR 349
Query: 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
YD+ V GLK+ GI C + +AGL+CW ++ L+ ++ GEL+LWD +L +N++PGS+
Sbjct: 350 YDTIVEGLKKAGIECLKGNAGLFCWMNLGFLLEKKTKDGELQLWDVILKELNLNISPGSS 409
Query: 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
CHC E GWFR CF +++ + + ++RI + +
Sbjct: 410 CHCSEVGWFRVCFANMSENTLEIALKRIHEFMD 442
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q00257|1A12_CUCMA 1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 163/329 (49%), Positives = 235/329 (71%), Gaps = 6/329 (1%)
Query: 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTG 63
FM+++ G VSF+ + IVLTAGAT A E L FCLA+ G+A L+P+PYYPGFDRD+++RTG
Sbjct: 98 FMAEIRGNKVSFEANNIVLTAGATSANETLMFCLAEAGDAFLLPTPYYPGFDRDLKWRTG 157
Query: 64 VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELL 123
VE++P+HC S++ F + +AL+QA+ A+ R ++V+G+L+ NP+NP+G + R+ L +
Sbjct: 158 VEIVPIHCTSSNGFQITQSALEQAYKDAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVF 217
Query: 124 DFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL-----EAEEVDKDRVHIIYGLSKDLSL 178
DF K IH+ISDEIY G++FG+ FVS E+L E EEV K RVHI+Y LSKDL L
Sbjct: 218 DFITSKGIHLISDEIYSGTVFGSPGFVSAMEVLKERSSEDEEVWK-RVHIVYSLSKDLGL 276
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238
PGFR G IYS ++ V+AAA K++ F +S+ TQ LL +MLSD KF Y+ N++R+K+
Sbjct: 277 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSAMLSDKKFTISYISENQKRLKQR 336
Query: 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
V+GL++ GI C +S+AGL+CW DM L+ S + ELELW K++ +N++PGS+
Sbjct: 337 QKMLVSGLQKAGINCLDSNAGLFCWVDMRHLLESDKFESELELWKKIVYEVGLNISPGSS 396
Query: 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQ 327
CHC EPGWFR CF +++ + L + R++
Sbjct: 397 CHCTEPGWFRVCFANMSESTLKLAVRRLK 425
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita maxima (taxid: 3661) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q42881|1A13_SOLLC 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 237/336 (70%), Gaps = 4/336 (1%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
M FMS++ G VSFD + +VLTAGAT A E L FCLA+ G+A L+P+PYYPGFDRD+++
Sbjct: 95 MTKFMSEIRGNRVSFDSNNLVLTAGATSANETLMFCLANQGDAFLLPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTG E++P+HC S++ F + +AL++A+ A+KR +KV+G+L+ NP+NP+G + R L
Sbjct: 155 RTGAEIVPIHCSSSNGFRITESALEEAYLDAKKRNLKVKGVLVTNPSNPLGTTLNRNELE 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK----DRVHIIYGLSKDL 176
LL F EK IH+ISDEIY G++F + FVS+ E+L + K +RVHI+Y LSKDL
Sbjct: 215 LLLTFIDEKGIHLISDEIYSGTVFNSPGFVSVMEVLIEKNYMKTRVWERVHIVYSLSKDL 274
Query: 177 SLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236
LPGFR G IYS +E V++AA K++ F +S+ TQ LL MLSD KF ++Y+ N++R+K
Sbjct: 275 GLPGFRIGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSCMLSDKKFTKKYISENQKRLK 334
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296
K + V GLK GI C ES+AGL+CW DM L+ S + E++LW K++ +N++PG
Sbjct: 335 KRHAMLVKGLKSAGINCLESNAGLFCWVDMRHLLSSNNFDAEMDLWKKIVYDVGLNISPG 394
Query: 297 SACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
S+CHC EPGWFR CF +++ + + L + RI+ E+
Sbjct: 395 SSCHCTEPGWFRVCFANMSEDTLDLAMRRIKDFVES 430
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9M2Y8|1A19_ARATH 1-aminocyclopropane-1-carboxylate synthase 9 OS=Arabidopsis thaliana GN=ACS9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 167/337 (49%), Positives = 245/337 (72%), Gaps = 6/337 (1%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A FM ++ G V+FDPS+IVL AG+T A E L FCLA+ G+A L+P+PYYPGFDRD+++
Sbjct: 95 LAEFMEEIRGNRVTFDPSKIVLAAGSTSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTG E++P+HC S++ F + +AL QA+ QA+K +KV+G+L+ NP+NP+G ++ R L
Sbjct: 155 RTGAEIVPIHCSSSNGFQITESALQQAYQQAQKLDLKVKGVLVTNPSNPLGTMLTRRELN 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI-----LEAEEVDKDRVHIIYGLSKD 175
L+DF KNIH+ISDEIY G++FG E+FVS+ ++ LE EV K RVHI+Y LSKD
Sbjct: 215 LLVDFITSKNIHLISDEIYSGTVFGFEQFVSVMDVLKDKNLENSEVSK-RVHIVYSLSKD 273
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS +E V++AA K++ F +S+ TQ LL ++LSD KF YL+ N++R+
Sbjct: 274 LGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTSTYLDENQKRL 333
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K V+GL+ GI C +S+AGL+CW DM L+ + + + ELELW K++ K+N++P
Sbjct: 334 KIRQKKLVSGLEAAGITCLKSNAGLFCWVDMRHLLDTNTFEAELELWKKIVYDVKLNISP 393
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
GS+CHC EPGWFR CF +++ + + L ++R+++ E+
Sbjct: 394 GSSCHCTEPGWFRVCFANMSEDTLDLAMKRLKEYVES 430
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q43309|1A14_ARATH 1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 237/335 (70%), Gaps = 5/335 (1%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
A FMS+ G VSFD + +VLTAGAT A E L FCLAD G+A L+P+PYYPGFDRD+++R
Sbjct: 96 ADFMSENRGNRVSFDSNNLVLTAGATSANETLMFCLADPGDAFLLPTPYYPGFDRDLKWR 155
Query: 62 TGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYE 121
TGVE++P+ ST+ F + AL++A+ QA+K + V+GILI NP+NP+G + L
Sbjct: 156 TGVEIVPIQSSSTNGFRITKLALEEAYEQAKKLDLNVKGILITNPSNPLGTTTTQTELNI 215
Query: 122 LLDF-AREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK----DRVHIIYGLSKDL 176
L DF + KNIH++SDEIY G++F + EF+S+ EIL+ +++ +RVHI+ LSKDL
Sbjct: 216 LFDFITKNKNIHLVSDEIYSGTVFNSSEFISVMEILKNNQLENTDVLNRVHIVCSLSKDL 275
Query: 177 SLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236
LPGFR G IYS ++ V++AA K++ F +S+ TQ LL S+LSD KF + YL N++R+K
Sbjct: 276 GLPGFRVGAIYSNDKDVISAATKMSSFGLVSSQTQYLLSSLLSDKKFTKNYLRENQKRLK 335
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296
V GL+ +GI+C +S+AGL+CW DM L+ S + + E++LW K++ K+N++PG
Sbjct: 336 NRQRKLVLGLEAIGIKCLKSNAGLFCWVDMRPLLRSKTFEAEMDLWKKIVYEVKLNISPG 395
Query: 297 SACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
S+CHC EPGWFR CF ++ E + L ++R++ + +
Sbjct: 396 SSCHCEEPGWFRVCFANMIDETLKLALKRLKMLVD 430
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q37001|1A15_ARATH 1-aminocyclopropane-1-carboxylate synthase 5 OS=Arabidopsis thaliana GN=ACS5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 164/337 (48%), Positives = 242/337 (71%), Gaps = 6/337 (1%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MA FM ++ G V+FDP +IVL AG+T A E L FCLA+ G+A L+P+PYYPGFDRD+++
Sbjct: 95 MAEFMEEIRGNRVTFDPKKIVLAAGSTSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTG E++P+HC S++ F + +AL QA+ QA+K +KV+G+L+ NP+NP+G + R L
Sbjct: 155 RTGAEIVPIHCSSSNGFQITESALQQAYQQAQKLDLKVKGVLVTNPSNPLGTALTRRELN 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI-----LEAEEVDKDRVHIIYGLSKD 175
L+DF KNIH+ISDEIY G++FG E+F+S+ ++ LE EV K RVH++Y LSKD
Sbjct: 215 LLVDFITSKNIHLISDEIYSGTMFGFEQFISVMDVLKDKKLEDTEVSK-RVHVVYSLSKD 273
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS +E +++AA K++ F +S+ TQ LL ++LSD KF +YLE N++R+
Sbjct: 274 LGLPGFRVGAIYSNDEMIVSAATKMSSFGLVSSQTQYLLSALLSDKKFTSQYLEENQKRL 333
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K V+GL+ GI C S+AGL+CW DM L+ + + + EL+LW K++ K+N++P
Sbjct: 334 KSRQRRLVSGLESAGITCLRSNAGLFCWVDMRHLLDTNTFEAELDLWKKIVYNVKLNISP 393
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
GS+CHC EPGWFR CF +++ + + L ++R++ E+
Sbjct: 394 GSSCHCTEPGWFRVCFANMSEDTLDLALKRLKTFVES 430
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 334 | ||||||
| 255539669 | 530 | acc synthase, putative [Ricinus communis | 1.0 | 0.630 | 0.811 | 1e-167 | |
| 224136826 | 504 | predicted protein [Populus trichocarpa] | 0.985 | 0.652 | 0.808 | 1e-162 | |
| 354683933 | 510 | 1-aminocyclopropane-1-carboxylate syntha | 0.994 | 0.650 | 0.777 | 1e-161 | |
| 225455586 | 503 | PREDICTED: probable aminotransferase ACS | 0.994 | 0.660 | 0.789 | 1e-161 | |
| 147780631 | 540 | hypothetical protein VITISV_003497 [Viti | 0.991 | 0.612 | 0.785 | 1e-160 | |
| 449460846 | 510 | PREDICTED: probable aminotransferase ACS | 1.0 | 0.654 | 0.748 | 1e-156 | |
| 449499716 | 510 | PREDICTED: probable aminotransferase ACS | 1.0 | 0.654 | 0.745 | 1e-155 | |
| 296084112 | 530 | unnamed protein product [Vitis vinifera] | 0.934 | 0.588 | 0.798 | 1e-153 | |
| 37030000 | 480 | 1-aminocyclopropane-1-carboxylate syntha | 1.0 | 0.695 | 0.709 | 1e-148 | |
| 164430546 | 480 | 1-aminocyclopropane-1-carboxylate syntha | 1.0 | 0.695 | 0.709 | 1e-148 |
| >gi|255539669|ref|XP_002510899.1| acc synthase, putative [Ricinus communis] gi|223550014|gb|EEF51501.1| acc synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 271/334 (81%), Positives = 310/334 (92%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MA F++QV+G+ VSFDPSQIVLTAGATPAVEILCFCLADHGNA LVP+PYYPGFDRDIR
Sbjct: 194 MAEFLTQVMGRVVSFDPSQIVLTAGATPAVEILCFCLADHGNAFLVPTPYYPGFDRDIRS 253
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVELIPVHCRSTD+F S+TAL+QA+NQARKRG+KVRGILI NP+NPVGN++PRETLY
Sbjct: 254 RTGVELIPVHCRSTDSFILSVTALEQAYNQARKRGLKVRGILITNPSNPVGNVLPRETLY 313
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
+LLDFA+EKNIH+ISDEI+ GS++G +EFVSMA+ILE EE DK RVHIIYGLSKDLSLPG
Sbjct: 314 DLLDFAQEKNIHIISDEIFAGSVYGTDEFVSMAQILEEEEFDKGRVHIIYGLSKDLSLPG 373
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR G IYSYNESVL AAK+LTRF SISAPTQRLL+SMLSDT+F++EY+ETN+RRI+++
Sbjct: 374 FRVGAIYSYNESVLTAAKRLTRFSSISAPTQRLLVSMLSDTRFMEEYIETNRRRIRRMNH 433
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
F+ G KQLGI+C+ESSAGLYCWA+MSGLIPSYSEKGEL+LWDKLLNIAKIN TPGSACH
Sbjct: 434 LFMEGFKQLGIKCAESSAGLYCWANMSGLIPSYSEKGELDLWDKLLNIAKINATPGSACH 493
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
CIEPGWFRCCFT+LT EDIP+VIERI+KV ETCK
Sbjct: 494 CIEPGWFRCCFTTLTEEDIPIVIERIRKVVETCK 527
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136826|ref|XP_002322425.1| predicted protein [Populus trichocarpa] gi|222869421|gb|EEF06552.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 266/329 (80%), Positives = 305/329 (92%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+AGFMSQV+ + VSFDPSQIVLTAGATPA+EILCFCLADHGNA L+P+PYYPGFDRD+R
Sbjct: 176 VAGFMSQVMEKVVSFDPSQIVLTAGATPAIEILCFCLADHGNAFLIPTPYYPGFDRDVRL 235
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVELIPVHCRS DNF S+TAL+QA+NQARKRGVKVRGILI NP+NPVGNI+P +TLY
Sbjct: 236 RTGVELIPVHCRSADNFLLSVTALEQAYNQARKRGVKVRGILISNPSNPVGNILPWQTLY 295
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
+LDFA+EKNIH+ISDEI+ GS++GN EFVSMAEILE EE DK+RVHIIYGLSKDL LPG
Sbjct: 296 NILDFAQEKNIHIISDEIFAGSVYGNMEFVSMAEILEKEEFDKNRVHIIYGLSKDLCLPG 355
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR GVIYSYNE+VLAAAK+LTRF SISAP+QRLLISMLSDTKFI+E+++TNK+RI++L+
Sbjct: 356 FRVGVIYSYNENVLAAAKRLTRFSSISAPSQRLLISMLSDTKFIEEFIKTNKQRIQELHY 415
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
SFV GLKQLGI+C ESSAG YCWA+MSGLIPSY EKGELELWDKLLNIAK+NVTPGSACH
Sbjct: 416 SFVDGLKQLGIQCIESSAGFYCWANMSGLIPSYGEKGELELWDKLLNIAKVNVTPGSACH 475
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
CIEPGWFRCCFT+L EDIP+V++RI+KV
Sbjct: 476 CIEPGWFRCCFTTLALEDIPVVMKRIRKV 504
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|354683933|gb|AER35095.1| 1-aminocyclopropane-1-carboxylate synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 258/332 (77%), Positives = 301/332 (90%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MAGFMS ++G AV+F+PSQ+VLTAGATPA+E LCFCLAD GNA LVP+PYYPGFDRD++F
Sbjct: 171 MAGFMSHIMGGAVTFEPSQMVLTAGATPAIETLCFCLADQGNAFLVPTPYYPGFDRDVKF 230
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVELIPVHCRSTDNFA SITALDQAFNQ RK G K+RGIL+ NPANPVGN++ RE LY
Sbjct: 231 RTGVELIPVHCRSTDNFALSITALDQAFNQTRKHGTKIRGILLSNPANPVGNLLSREMLY 290
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
+LDFAREKNIHVISDEI+ GS++GNEEFVSMAE+L++E+ DK+RVHI+YGLSKDLSLPG
Sbjct: 291 AILDFAREKNIHVISDEIFAGSMYGNEEFVSMAEVLDSEDFDKNRVHIVYGLSKDLSLPG 350
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR GVIYS+NE+VLAAA+KLTRF S+SAPTQRLL+SMLSD +FI+EY++TNKRR++ ++
Sbjct: 351 FRVGVIYSFNENVLAAARKLTRFSSVSAPTQRLLVSMLSDARFIEEYIKTNKRRLQNMHA 410
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
FVAGLK L IRC++SSAGLYCWADMS LI SYSEKGELELWDKLLN+ KINVTPGSACH
Sbjct: 411 LFVAGLKGLNIRCADSSAGLYCWADMSKLISSYSEKGELELWDKLLNVGKINVTPGSACH 470
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
CIEPGWFRCCFT+L EDIP+V+ERI+K E
Sbjct: 471 CIEPGWFRCCFTTLAEEDIPVVLERIRKAVEN 502
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455586|ref|XP_002268932.1| PREDICTED: probable aminotransferase ACS12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 262/332 (78%), Positives = 301/332 (90%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+AGFMSQV+G VSFDPS++VLT+GATPA+E LCFCLAD GNA LVP+PYYPGFDRD+++
Sbjct: 172 VAGFMSQVMGTTVSFDPSRLVLTSGATPAIETLCFCLADQGNAFLVPTPYYPGFDRDMKW 231
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVELIPVHCRS+DNFA S+TALDQAFNQARKRG +VRGILI NP+NP+GN++ +ETLY
Sbjct: 232 RTGVELIPVHCRSSDNFALSVTALDQAFNQARKRGQRVRGILISNPSNPIGNMLNKETLY 291
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
LLDFAREKNIH+ISDEI+ GS +G+EEFVSMAEILE+E+ DKDRVHIIYGLSKDLSLPG
Sbjct: 292 SLLDFAREKNIHIISDEIFAGSTYGSEEFVSMAEILESEDFDKDRVHIIYGLSKDLSLPG 351
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR GVIYS+N SVLAAAKKL RF S+SAPTQR+LISMLSDT+FIQ Y+ET + RI+K+Y
Sbjct: 352 FRVGVIYSFNTSVLAAAKKLARFSSVSAPTQRILISMLSDTRFIQRYIETTRERIQKMYV 411
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
+F AGLKQLGI C++SSAGLYCWADMSGLI Y+EKGELELWDKLL I KINVTPGSACH
Sbjct: 412 AFAAGLKQLGIECTKSSAGLYCWADMSGLIRPYNEKGELELWDKLLKIGKINVTPGSACH 471
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
CIEPGWFRCCFT L EDIP+VI+RIQ+V ET
Sbjct: 472 CIEPGWFRCCFTMLAEEDIPVVIKRIQRVVET 503
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147780631|emb|CAN66821.1| hypothetical protein VITISV_003497 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 260/331 (78%), Positives = 299/331 (90%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+AGFMSQV+G VSFDPS++VLT+GATPA+E LCFCLAD GNA LVP+PYYPGFDRD+++
Sbjct: 207 VAGFMSQVMGTTVSFDPSRLVLTSGATPAIETLCFCLADQGNAFLVPTPYYPGFDRDMKW 266
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVELIPVHCRS+DNFA S+TALDQAFNQARKRG +VRGILI NP+NP+GN++ +ETLY
Sbjct: 267 RTGVELIPVHCRSSDNFALSVTALDQAFNQARKRGQRVRGILISNPSNPIGNMLNKETLY 326
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
LLDFAREKNIH+ISDEI+ GS +G+EEFVSMAEIL +E+ DKDRVHIIYGLSKDLSLPG
Sbjct: 327 SLLDFAREKNIHIISDEIFAGSTYGSEEFVSMAEILGSEDFDKDRVHIIYGLSKDLSLPG 386
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR GVIYS+N SVLAAAKKL RF S+SAPTQR+LISMLSDT+FIQ Y+ET + RI+K+Y
Sbjct: 387 FRVGVIYSFNTSVLAAAKKLARFSSVSAPTQRILISMLSDTRFIQRYIETTRERIQKMYV 446
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
+F AGLKQLGI C++SSAGLYCWADMSGLI Y+EKGELELWDKLL I KINVTPGSACH
Sbjct: 447 AFAAGLKQLGIECTKSSAGLYCWADMSGLIRPYNEKGELELWDKLLKIGKINVTPGSACH 506
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
CIEPGWFRCCFT L EDIP+VI+RIQ+V E
Sbjct: 507 CIEPGWFRCCFTMLAEEDIPVVIKRIQRVVE 537
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460846|ref|XP_004148155.1| PREDICTED: probable aminotransferase ACS12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust.
Identities = 250/334 (74%), Positives = 302/334 (90%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MAGFMSQV+G V+FDPS ++LT+GAT AVE+LCFCLAD GNA LVP+PYYPGFDRD+++
Sbjct: 174 MAGFMSQVMGGGVAFDPSHLLLTSGATAAVEVLCFCLADPGNAFLVPTPYYPGFDRDMKW 233
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGV+LIPVHCRS DNF +IT L+QAFNQARKRGVKVRGIL+ NPANPVGN++PRE LY
Sbjct: 234 RTGVDLIPVHCRSADNFNLNITVLEQAFNQARKRGVKVRGILLSNPANPVGNMLPREMLY 293
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
+LDFA+EKNIHV+SDEI+ GS++GN+EFVSMAEI+++E++DK+RVHI+YGLSKDLSLPG
Sbjct: 294 SILDFAQEKNIHVVSDEIFAGSVYGNDEFVSMAEIIDSEDIDKNRVHIVYGLSKDLSLPG 353
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR GVIYS NE+VLAAA+K+TRFC ISAPTQRL+ MLSD FI EYLET+K+RI+++Y
Sbjct: 354 FRVGVIYSQNENVLAAARKMTRFCPISAPTQRLVTLMLSDRTFINEYLETSKKRIREMYV 413
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
FVAGLKQLGI+C++SSAG +CW DMSGL+ SYSEKGELELW+KLLN+AKIN TPGSACH
Sbjct: 414 LFVAGLKQLGIKCAKSSAGFFCWVDMSGLMNSYSEKGELELWEKLLNVAKINATPGSACH 473
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
CIEPGWFRCCFT+L+ ED+ +VIERI+K+A T K
Sbjct: 474 CIEPGWFRCCFTTLSREDLLIVIERIKKIAGTSK 507
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449499716|ref|XP_004160895.1| PREDICTED: probable aminotransferase ACS12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust.
Identities = 249/334 (74%), Positives = 301/334 (90%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MAGFMSQV+G V+FDPS ++LT+GAT AVE+LCFCLAD GNA LVP+PYYPGFDRD+++
Sbjct: 174 MAGFMSQVMGGGVAFDPSHLLLTSGATAAVEVLCFCLADPGNAFLVPTPYYPGFDRDMKW 233
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGV+LI VHCRS DNF +IT L+QAFNQARKRGVKVRGIL+ NPANPVGN++PRE LY
Sbjct: 234 RTGVDLIAVHCRSADNFNLNITVLEQAFNQARKRGVKVRGILLSNPANPVGNMLPREMLY 293
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
+LDFA+EKNIHV+SDEI+ GS++GN+EFVSMAEI+++E++DK+RVHI+YGLSKDLSLPG
Sbjct: 294 SILDFAQEKNIHVVSDEIFAGSVYGNDEFVSMAEIIDSEDIDKNRVHIVYGLSKDLSLPG 353
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR GVIYS NE+VLAAA+K+TRFC ISAPTQRL+ MLSD FI EYLET+K+RI+++Y
Sbjct: 354 FRVGVIYSQNENVLAAARKMTRFCPISAPTQRLVTLMLSDRTFINEYLETSKKRIREMYV 413
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
FVAGLKQLGI+C++SSAG +CW DMSGL+ SYSEKGELELW+KLLN+AKIN TPGSACH
Sbjct: 414 LFVAGLKQLGIKCAKSSAGFFCWVDMSGLMNSYSEKGELELWEKLLNVAKINATPGSACH 473
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
CIEPGWFRCCFT+L+ ED+ +VIERI+K+A T K
Sbjct: 474 CIEPGWFRCCFTTLSREDLLIVIERIKKIAGTSK 507
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084112|emb|CBI24500.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 249/312 (79%), Positives = 285/312 (91%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+AGFMSQV+G VSFDPS++VLT+GATPA+E LCFCLAD GNA LVP+PYYPGFDRD+++
Sbjct: 207 VAGFMSQVMGTTVSFDPSRLVLTSGATPAIETLCFCLADQGNAFLVPTPYYPGFDRDMKW 266
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVELIPVHCRS+DNFA S+TALDQAFNQARKRG +VRGILI NP+NP+GN++ +ETLY
Sbjct: 267 RTGVELIPVHCRSSDNFALSVTALDQAFNQARKRGQRVRGILISNPSNPIGNMLNKETLY 326
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
LLDFAREKNIH+ISDEI+ GS +G+EEFVSMAEILE+E+ DKDRVHIIYGLSKDLSLPG
Sbjct: 327 SLLDFAREKNIHIISDEIFAGSTYGSEEFVSMAEILESEDFDKDRVHIIYGLSKDLSLPG 386
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR GVIYS+N SVLAAAKKL RF S+SAPTQR+LISMLSDT+FIQ Y+ET + RI+K+Y
Sbjct: 387 FRVGVIYSFNTSVLAAAKKLARFSSVSAPTQRILISMLSDTRFIQRYIETTRERIQKMYV 446
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
+F AGLKQLGI C++SSAGLYCWADMSGLI Y+EKGELELWDKLL I KINVTPGSACH
Sbjct: 447 AFAAGLKQLGIECTKSSAGLYCWADMSGLIRPYNEKGELELWDKLLKIGKINVTPGSACH 506
Query: 301 CIEPGWFRCCFT 312
CIEPGWFRCCFT
Sbjct: 507 CIEPGWFRCCFT 518
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37030000|gb|AAQ88100.1| 1-aminocyclopropane-1-carboxylate synthase [Rosa hybrid cultivar] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 237/334 (70%), Positives = 297/334 (88%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+AGFMS+ +G +V+++PSQIVLTAGATPA+EIL FCLAD GNA LVP+PYYPG DRD+++
Sbjct: 144 VAGFMSKAIGNSVTYNPSQIVLTAGATPAIEILSFCLADSGNAFLVPAPYYPGLDRDVKW 203
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE+IPV CRS D F SITALD+AFNQA+KRGVKVRGI+I NP+NP G+++ RE+LY
Sbjct: 204 RTGVEIIPVPCRSADKFNLSITALDRAFNQAKKRGVKVRGIIISNPSNPGGSLLTRESLY 263
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
LLDFAREKNIH+IS+E++ GS +G+EEFVSMAEI++ E++D++RVHI+YG+SKDLSLPG
Sbjct: 264 NLLDFAREKNIHIISNELFAGSTYGSEEFVSMAEIVDLEDLDQNRVHIVYGISKDLSLPG 323
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR G IYS+N++VL AAKKLTRF SISAP+QRLLISMLSDTKF+ +++E N+ R++ +Y
Sbjct: 324 FRVGAIYSFNKNVLTAAKKLTRFSSISAPSQRLLISMLSDTKFMHKFIEINRERLRGMYL 383
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
FV GLKQLGI C++S+ G YCWAD+SGLI SYSEKGELELWD+LLN+ K+NVTPGS+CH
Sbjct: 384 RFVTGLKQLGIECTKSNGGFYCWADLSGLIRSYSEKGELELWDRLLNVGKLNVTPGSSCH 443
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
CIEPGWFR CFT+LT +DIP+VIERI+ +AETCK
Sbjct: 444 CIEPGWFRFCFTTLTEKDIPVVIERIRNIAETCK 477
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164430546|gb|ABY55587.1| 1-aminocyclopropane-1-carboxylate synthase [Rosa hybrid cultivar] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 237/334 (70%), Positives = 297/334 (88%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+AGFMS+ +G +V+++PSQIVLTAGATPA+EIL FCLAD GNA LVP+PYYPG DRD+++
Sbjct: 144 VAGFMSKAIGNSVTYNPSQIVLTAGATPAIEILSFCLADSGNAFLVPAPYYPGLDRDVKW 203
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE+IPV CRS D F SITALD+AFNQA+KRGVKVRGI+I NP+NP G+++ RE+LY
Sbjct: 204 RTGVEIIPVPCRSADKFNLSITALDRAFNQAKKRGVKVRGIIISNPSNPGGSLLTRESLY 263
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
LLDFAREKNIH+IS+E++ GS +G+EEFVSMAEI++ E++D++RVHI+YG+SKDLSLPG
Sbjct: 264 NLLDFAREKNIHIISNELFAGSTYGSEEFVSMAEIVDLEDLDQNRVHIVYGISKDLSLPG 323
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
FR G IYS+N++VL AAKKLTRF SISAP+QRLLISMLSDTKF+ +++E N+ R++ +Y
Sbjct: 324 FRVGAIYSFNKNVLTAAKKLTRFSSISAPSQRLLISMLSDTKFMHKFIEINRERLRGMYL 383
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
FV GLKQLGI C++S+ G YCWAD+SGLI SYSEKGELELWD+LLN+ K+NVTPGS+CH
Sbjct: 384 RFVTGLKQLGIECTKSNGGFYCWADLSGLIRSYSEKGELELWDRLLNVGKLNVTPGSSCH 443
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
CIEPGWFR CFT+LT +DIP+VIERI+ +AETCK
Sbjct: 444 CIEPGWFRFCFTTLTEKDIPVVIERIRNIAETCK 477
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 334 | ||||||
| TAIR|locus:2165306 | 495 | ACS12 "1-amino-cyclopropane-1- | 0.991 | 0.668 | 0.676 | 9.9e-126 | |
| TAIR|locus:2015509 | 557 | ACS10 "ACC synthase 10" [Arabi | 1.0 | 0.599 | 0.613 | 1.3e-116 | |
| TAIR|locus:2136779 | 447 | ACS7 "1-amino-cyclopropane-1-c | 0.982 | 0.733 | 0.496 | 1.6e-93 | |
| TAIR|locus:2137579 | 469 | ACS8 "1-amino-cyclopropane-1-c | 0.991 | 0.705 | 0.498 | 2.4e-92 | |
| TAIR|locus:2097350 | 470 | ACS9 "1-aminocyclopropane-1-ca | 0.991 | 0.704 | 0.495 | 3e-92 | |
| UNIPROTKB|O80334 | 467 | O80334 "1-aminocyclopropane-1- | 0.994 | 0.710 | 0.489 | 8.1e-92 | |
| TAIR|locus:2169980 | 470 | ACS5 "ACC synthase 5" [Arabido | 0.991 | 0.704 | 0.486 | 1.3e-91 | |
| UNIPROTKB|Q43165 | 465 | ST ACS1A "Amino cyclopropane c | 0.982 | 0.705 | 0.485 | 3.5e-91 | |
| UNIPROTKB|P37821 | 473 | ACS-1 "1-aminocyclopropane-1-c | 0.979 | 0.691 | 0.475 | 4e-90 | |
| UNIPROTKB|Q6TRG0 | 474 | ACS1b "1-aminocyclopropane-1-c | 0.979 | 0.689 | 0.472 | 1.1e-89 |
| TAIR|locus:2165306 ACS12 "1-amino-cyclopropane-1-carboxylate synthase 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 224/331 (67%), Positives = 280/331 (84%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
A FMS+++G VSFDPS +V+TAG TPA+E+L FCLADHGNA L+P+PYYPGFDRDI+FR
Sbjct: 162 ADFMSRIMGGNVSFDPSNMVITAGGTPAIEVLAFCLADHGNAFLIPTPYYPGFDRDIKFR 221
Query: 62 TGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYE 121
TGVELIPVHCRS+DNF +++AL+QA NQARKRG KV GIL NP+NPVGNI+ RETL +
Sbjct: 222 TGVELIPVHCRSSDNFTVTVSALEQALNQARKRGSKVSGILFSNPSNPVGNILSRETLCD 281
Query: 122 LLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF 181
+L FA+EKNIHVISDEI+ GS++G++EFVSMAEI + E DK RVHIIYGLSKDLS+PGF
Sbjct: 282 ILRFAQEKNIHVISDEIFAGSVYGDKEFVSMAEIAGSGEFDKTRVHIIYGLSKDLSIPGF 341
Query: 182 RTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241
R GVIYS++E V+ AAKKL RF S+ QR+LIS+LSD +FI+ Y+ +++RI+ +
Sbjct: 342 RAGVIYSFHEDVVNAAKKLMRFSSVPVLVQRILISLLSDVRFIEGYMAAHRQRIRDKHIR 401
Query: 242 FVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301
FV GLKQLGI C+ES GLYCW DMS L+ SYSEKGELEL++KLL +AKIN TPG+AC+C
Sbjct: 402 FVEGLKQLGIPCAESGGGLYCWVDMSSLLTSYSEKGELELFEKLLTVAKINATPGTACYC 461
Query: 302 IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
IEPGWFRCCFT+L EDIP+++ERI+++AE+
Sbjct: 462 IEPGWFRCCFTALADEDIPVIMERIRQLAES 492
|
|
| TAIR|locus:2015509 ACS10 "ACC synthase 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
Identities = 206/336 (61%), Positives = 274/336 (81%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+AGFM++ +V+FDPSQ+VLT+GA+ A+EIL FCLAD GNA LVP+P PG+DRD+++
Sbjct: 219 VAGFMTEATKNSVTFDPSQLVLTSGASSAIEILSFCLADSGNAFLVPTPCSPGYDRDVKW 278
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGV++I V CRS DNF S+ LD+AF QA+KRGV++RGI+I NP+NP+G+++ RE LY
Sbjct: 279 RTGVDIIHVPCRSADNFNMSMVVLDRAFYQAKKRGVRIRGIIISNPSNPMGSLLSRENLY 338
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAEILEAEE-VDKDRVHIIYGLSKDLSL 178
LLDFARE+NIH+IS+EI+ GS+ G E EFVSMAEI++ EE +D++RVHI+Y LSKDLS
Sbjct: 339 ALLDFARERNIHIISNEIFAGSVHGEEGEFVSMAEIVDTEENIDRERVHIVYDLSKDLSF 398
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238
G R+ IYS+NESVL+A++KLT +S+PTQ LLIS +S+ K +Q +++TN++R++ +
Sbjct: 399 RGLRSAAIYSFNESVLSASRKLTTLSPVSSPTQHLLISAISNPKNVQRFVKTNRQRLQSI 458
Query: 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
Y V GLK+LGI C+ S+ G YCWADM GLI SYSEKGE+ELW+KLLNI KINV PGS
Sbjct: 459 YTELVEGLKELGIECTRSNGGFYCWADMRGLISSYSEKGEIELWNKLLNIGKINVIPGSC 518
Query: 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
CHCIEPGWFR CF++L+ D+P+V+ RI+KV ETCK
Sbjct: 519 CHCIEPGWFRICFSNLSERDVPVVMNRIRKVCETCK 554
|
|
| TAIR|locus:2136779 ACS7 "1-amino-cyclopropane-1-carboxylate synthase 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
Identities = 164/330 (49%), Positives = 241/330 (73%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MA FM Q+ G FDP +IVLTAGAT A E+L F LAD +ALLVP+PYYPGFDRD+R+
Sbjct: 110 MASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPNDALLVPTPYYPGFDRDLRW 169
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGV+++P+HC S+++F + AL+ A+ AR ++VRG+LI NP+NP+G + ++ L
Sbjct: 170 RTGVKIVPIHCDSSNHFQITPEALESAYQTARDANIRVRGVLITNPSNPLGATVQKKVLE 229
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE-AEEVD-KDRVHIIYGLSKDLSL 178
+LLDF KNIH++SDEIY GS+F EF S+AEI+E ++V K+RVHI+Y LSKDL L
Sbjct: 230 DLLDFCVRKNIHLVSDEIYSGSVFHASEFTSVAEIVENIDDVSVKERVHIVYSLSKDLGL 289
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238
PGFR G IYSYN++V+ A++++ F +S+ TQ +L SMLSD +F ++Y+ N+ R+++
Sbjct: 290 PGFRVGTIYSYNDNVVRTARRMSSFTLVSSQTQHMLASMLSDEEFTEKYIRINRERLRRR 349
Query: 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
YD+ V GLK+ GI C + +AGL+CW ++ L+ ++ GEL+LWD +L +N++PGS+
Sbjct: 350 YDTIVEGLKKAGIECLKGNAGLFCWMNLGFLLEKKTKDGELQLWDVILKELNLNISPGSS 409
Query: 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQK 328
CHC E GWFR CF +++ + + ++RI +
Sbjct: 410 CHCSEVGWFRVCFANMSENTLEIALKRIHE 439
|
|
| TAIR|locus:2137579 ACS8 "1-amino-cyclopropane-1-carboxylate synthase 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
Identities = 167/335 (49%), Positives = 242/335 (72%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MA FMS+ G VSF+P+++VLTAGATPA E L FCLAD G+A L+P+PYYPGFDRD+++
Sbjct: 95 MADFMSENRGNRVSFNPNKLVLTAGATPANETLMFCLADPGDAFLLPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTG E++P+ C+S + F + AL++A+ QA+K +KV+G+LI NP+NP+G R L
Sbjct: 155 RTGAEIVPIQCKSANGFRITKVALEEAYEQAQKLNLKVKGVLITNPSNPLGTTTTRTELN 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK----DRVHIIYGLSKDL 176
LLDF K IH+ISDEIY G++F N F+S+ E+L+ +++ DRVHI+Y LSKDL
Sbjct: 215 HLLDFISRKKIHLISDEIYSGTVFTNPGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDL 274
Query: 177 SLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236
LPGFR GVIYS ++ V++AA K++ F IS+ TQ LL ++LSD F + YLE N+ R+K
Sbjct: 275 GLPGFRVGVIYSNDDFVVSAATKMSSFGLISSQTQYLLSALLSDKTFTKNYLEENQIRLK 334
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296
+ V+GL+ GI C +S+AGL+CW DM L+ S + + E+ELW K++ K+N++PG
Sbjct: 335 NRHKKLVSGLEAAGIECLKSNAGLFCWVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPG 394
Query: 297 SACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
S+CHC EPGWFR CF +L+ E + + ++R+++ +
Sbjct: 395 SSCHCNEPGWFRVCFANLSEETLKVALDRLKRFVD 429
|
|
| TAIR|locus:2097350 ACS9 "1-aminocyclopropane-1-carboxylate synthase 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 167/337 (49%), Positives = 245/337 (72%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A FM ++ G V+FDPS+IVL AG+T A E L FCLA+ G+A L+P+PYYPGFDRD+++
Sbjct: 95 LAEFMEEIRGNRVTFDPSKIVLAAGSTSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTG E++P+HC S++ F + +AL QA+ QA+K +KV+G+L+ NP+NP+G ++ R L
Sbjct: 155 RTGAEIVPIHCSSSNGFQITESALQQAYQQAQKLDLKVKGVLVTNPSNPLGTMLTRRELN 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL-----EAEEVDKDRVHIIYGLSKD 175
L+DF KNIH+ISDEIY G++FG E+FVS+ ++L E EV K RVHI+Y LSKD
Sbjct: 215 LLVDFITSKNIHLISDEIYSGTVFGFEQFVSVMDVLKDKNLENSEVSK-RVHIVYSLSKD 273
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS +E V++AA K++ F +S+ TQ LL ++LSD KF YL+ N++R+
Sbjct: 274 LGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTSTYLDENQKRL 333
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K V+GL+ GI C +S+AGL+CW DM L+ + + + ELELW K++ K+N++P
Sbjct: 334 KIRQKKLVSGLEAAGITCLKSNAGLFCWVDMRHLLDTNTFEAELELWKKIVYDVKLNISP 393
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
GS+CHC EPGWFR CF +++ + + L ++R+++ E+
Sbjct: 394 GSSCHCTEPGWFRVCFANMSEDTLDLAMKRLKEYVES 430
|
|
| UNIPROTKB|O80334 O80334 "1-aminocyclopropane-1-carboxylate synthase" [Actinidia deliciosa (taxid:3627)] | Back alignment and assigned GO terms |
|---|
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 164/335 (48%), Positives = 239/335 (71%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
M FMS++ G VSFDP ++VLTAGAT A E L FCLA+ G A L+P+PYYPGFDRD+++
Sbjct: 95 MVDFMSEIRGNKVSFDPKKLVLTAGATSANETLMFCLAEPGEAFLLPTPYYPGFDRDLQW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE++P+HC S ++F + +AL++A+ A+KR ++V+G+L+ NP+NP+G + R L
Sbjct: 155 RTGVEIVPIHCTSANSFQITDSALEEAYQSAQKRNLRVKGVLVTNPSNPLGTTLTRPELN 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD---RVHIIYGLSKDLS 177
LL F KNIH+ISDEIY G++F + +FVS+ E+L+ + RVHI+Y LSKDL
Sbjct: 215 LLLTFITSKNIHLISDEIYSGTVFSSPDFVSIMEVLKDSSHSTEVWNRVHIVYSLSKDLG 274
Query: 178 LPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237
LPGFR G IYS ++ V+AAA K++ F +S+ TQ LL SMLSD F + Y+ N++R+KK
Sbjct: 275 LPGFRVGAIYSNDDVVVAAATKMSSFGLVSSQTQYLLASMLSDKNFTKHYISENQKRLKK 334
Query: 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297
+ ++GL+ GI C +S+AGL+CW DM L+ S S E+ELW K++ +N++PGS
Sbjct: 335 RQEMLISGLQSAGIGCLKSNAGLFCWVDMRHLLSSKSFDSEMELWKKIVYQVGLNISPGS 394
Query: 298 ACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
+CHC EPGWFR CF +++ + + + I+RI+ +T
Sbjct: 395 SCHCSEPGWFRVCFANMSEDTLDIAIQRIKTFVQT 429
|
|
| TAIR|locus:2169980 ACS5 "ACC synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 164/337 (48%), Positives = 242/337 (71%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MA FM ++ G V+FDP +IVL AG+T A E L FCLA+ G+A L+P+PYYPGFDRD+++
Sbjct: 95 MAEFMEEIRGNRVTFDPKKIVLAAGSTSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTG E++P+HC S++ F + +AL QA+ QA+K +KV+G+L+ NP+NP+G + R L
Sbjct: 155 RTGAEIVPIHCSSSNGFQITESALQQAYQQAQKLDLKVKGVLVTNPSNPLGTALTRRELN 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL-----EAEEVDKDRVHIIYGLSKD 175
L+DF KNIH+ISDEIY G++FG E+F+S+ ++L E EV K RVH++Y LSKD
Sbjct: 215 LLVDFITSKNIHLISDEIYSGTMFGFEQFISVMDVLKDKKLEDTEVSK-RVHVVYSLSKD 273
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS +E +++AA K++ F +S+ TQ LL ++LSD KF +YLE N++R+
Sbjct: 274 LGLPGFRVGAIYSNDEMIVSAATKMSSFGLVSSQTQYLLSALLSDKKFTSQYLEENQKRL 333
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K V+GL+ GI C S+AGL+CW DM L+ + + + EL+LW K++ K+N++P
Sbjct: 334 KSRQRRLVSGLESAGITCLRSNAGLFCWVDMRHLLDTNTFEAELDLWKKIVYNVKLNISP 393
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
GS+CHC EPGWFR CF +++ + + L ++R++ E+
Sbjct: 394 GSSCHCTEPGWFRVCFANMSEDTLDLALKRLKTFVES 430
|
|
| UNIPROTKB|Q43165 ST ACS1A "Amino cyclopropane carboxylate acid synthase" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 162/334 (48%), Positives = 245/334 (73%)
Query: 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTG 63
FMS++ G VSFD +++VLTAGAT A E L FCLAD G+A L+P+PYYPGFDRD+++RTG
Sbjct: 98 FMSEIRGNKVSFDSNKLVLTAGATSANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTG 157
Query: 64 VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELL 123
E++P+ C S++ F + +AL++A+ +A +R ++V+G+L+ NP+NP+G+ + ++ L LL
Sbjct: 158 AEIVPIQCTSSNGFRITESALEEAYKEAERRNLRVKGVLVTNPSNPLGSTLTKKELQLLL 217
Query: 124 DFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE-----EVDKDRVHIIYGLSKDLSL 178
F K IH+ISDEIY G++F + +FVS+ E+L EV DRVHI+Y LSKDL L
Sbjct: 218 TFVSTKQIHLISDEIYSGTVFNSPKFVSVMEVLIENNYMYTEV-WDRVHIVYSLSKDLGL 276
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238
PGFR G IYS ++ +++AA K++ F IS+ TQ LL ++LSD KF++ Y+ N++R+KK
Sbjct: 277 PGFRVGAIYSNDDMIVSAATKMSSFGLISSQTQYLLSALLSDQKFMKNYVSENQKRLKKR 336
Query: 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
++ V GLKQ+GIRC ES+AGL+CW DM L+ S + GE+ELW K++ +N++PGS+
Sbjct: 337 HEMLVGGLKQIGIRCLESNAGLFCWVDMRHLLSSNTFDGEMELWKKIVYEVGLNISPGSS 396
Query: 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
CHC EPGWFR CF +++ + + + I+R++ ++
Sbjct: 397 CHCTEPGWFRACFANMSEDTLNIAIQRLKAFVDS 430
|
|
| UNIPROTKB|P37821 ACS-1 "1-aminocyclopropane-1-carboxylate synthase" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
Identities = 158/332 (47%), Positives = 234/332 (70%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
M FM+++ G V+FDP+ +VLTAGAT A E FCLAD G A+L+P+PYYPGFDRD+++
Sbjct: 95 MVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE++P+HC S++ F + TAL++A+ +A KR ++V+G+L+ NP+NP+G + R LY
Sbjct: 155 RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELY 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD-----RVHIIYGLSKD 175
LL F +K IH+ISDEIY G+ F + F+S+ E+L+ D++ RVH++Y LSKD
Sbjct: 215 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKD 274
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS ++ V+AAA K++ F +S+ TQ LL +MLSD K + Y+ N +R+
Sbjct: 275 LGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL 334
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K+ V+GL++ GI C +AGL+CW DM L+ S + + E+ELW K++ +N++P
Sbjct: 335 KQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISP 394
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQ 327
GS+CHC EPGWFR CF +L + L ++R++
Sbjct: 395 GSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426
|
|
| UNIPROTKB|Q6TRG0 ACS1b "1-aminocyclopropane-1-carboxylate synthase 1b" [Pyrus communis (taxid:23211)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 157/332 (47%), Positives = 233/332 (70%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
M FM+++ G V+ DP+ +VLTAGAT A E FCLAD G A+L+P+PYYPGFDRD+++
Sbjct: 95 MVDFMAEIRGNKVTLDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE++P+HC S++ F + T L++A+ +A KR ++V+G+L+ NP+NP+G + R LY
Sbjct: 155 RTGVEIVPIHCTSSNGFQITETTLEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELY 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD-----RVHIIYGLSKD 175
LL F +K IH+ISDEIY G+ F + F+S+ E+L+ DK+ RVH++Y LSKD
Sbjct: 215 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDKNSEVWQRVHVVYSLSKD 274
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS ++ V+AAA K++ F +S+ TQ LL +MLSD K + Y+ N +R+
Sbjct: 275 LGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL 334
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K+ + V+GL++ GI C +AGL+CW DM L+ S + + E+ELW K++ +N++P
Sbjct: 335 KQRQKNLVSGLQKAGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISP 394
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQ 327
GS+CHC EPGWFR CF +L + L ++R++
Sbjct: 395 GSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GYY0 | 1A112_ARATH | 2, ., 6, ., 1, ., - | 0.6706 | 1.0 | 0.6747 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 334 | |||
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 1e-153 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 1e-150 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 1e-110 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 4e-75 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 7e-62 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 5e-54 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 4e-40 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 4e-29 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 8e-27 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 2e-26 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 1e-25 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 5e-24 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 1e-23 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 2e-23 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 1e-22 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 3e-21 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 2e-20 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 2e-20 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 4e-20 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 6e-20 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 7e-20 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 7e-19 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 1e-18 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 2e-18 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 2e-18 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 2e-18 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 7e-18 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 7e-18 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 9e-18 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 1e-17 | |
| PLN02994 | 153 | PLN02994, PLN02994, 1-aminocyclopropane-1-carboxyl | 4e-17 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 3e-16 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 4e-16 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 1e-15 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 2e-15 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 2e-15 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 2e-15 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 1e-14 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 1e-14 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 1e-14 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 3e-14 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 4e-14 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 6e-14 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 6e-14 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 1e-13 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 2e-13 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 3e-12 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 3e-12 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 6e-12 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 8e-12 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 8e-12 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 1e-11 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 2e-11 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 4e-11 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 8e-11 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 8e-11 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 2e-10 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 5e-10 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 9e-10 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 1e-09 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 8e-09 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 1e-08 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 4e-08 | |
| PRK07590 | 409 | PRK07590, PRK07590, L,L-diaminopimelate aminotrans | 5e-08 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 6e-08 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 8e-08 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 7e-07 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 1e-06 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 2e-06 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 8e-06 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 8e-06 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 1e-05 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 2e-05 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 3e-05 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 4e-05 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 5e-05 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 6e-05 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 7e-05 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 2e-04 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 3e-04 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 3e-04 | |
| PRK07908 | 349 | PRK07908, PRK07908, hypothetical protein; Provisio | 4e-04 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 4e-04 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 0.001 | |
| PRK05387 | 353 | PRK05387, PRK05387, histidinol-phosphate aminotran | 0.001 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 0.002 | |
| PRK06425 | 332 | PRK06425, PRK06425, histidinol-phosphate aminotran | 0.002 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 0.003 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 0.004 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 0.004 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 438 bits (1127), Expect = e-153
Identities = 168/336 (50%), Positives = 246/336 (73%), Gaps = 6/336 (1%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A FMS++ G V+FDP+++VLTAGAT A E L FCLA+ G+A L+P+PYYPGFDRD+++
Sbjct: 95 LAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE++P+HC S++ F + +AL++A+ QA+K +KV+G+LI NP+NP+G R L
Sbjct: 155 RTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELN 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL-----EAEEVDKDRVHIIYGLSKD 175
L+DF KNIH+ISDEIY G++F + FVS+ E+L E +V +RVHI+Y LSKD
Sbjct: 215 LLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVS-NRVHIVYSLSKD 273
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS +E V++AA K++ F +S+ TQ LL ++LSD KF + YLE N++R+
Sbjct: 274 LGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRL 333
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K+ V+GL+ GI+C +S+AGL+CW DM L+ S + + E+ELW K++ K+N++P
Sbjct: 334 KQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISP 393
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
GS+CHC EPGWFR CF +++ E + L ++R++ E
Sbjct: 394 GSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVE 429
|
Length = 468 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 430 bits (1108), Expect = e-150
Identities = 169/334 (50%), Positives = 242/334 (72%), Gaps = 2/334 (0%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
MA FM Q+ G FDP +IVLTAGAT A E+L F LAD G+ALLVP+PYYPGFDRD+R+
Sbjct: 104 MASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW 163
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGV+++P+HC S++NF + AL+ A+ +A ++VRG+LI NP+NP+G + R L
Sbjct: 164 RTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLE 223
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD--KDRVHIIYGLSKDLSL 178
++LDF KNIH++SDEIY GS+F EFVS+AEI+EA +RVHI+Y LSKDL L
Sbjct: 224 DILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGL 283
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238
PGFR G IYSYN+ V+ A++++ F +S+ TQ LL SMLSD +F + Y+ TN+ R++K
Sbjct: 284 PGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKR 343
Query: 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
Y+ V GL++ GI C + +AGL+CW ++S L+ + + +GEL LWD +L K+N++PGS+
Sbjct: 344 YEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSS 403
Query: 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332
CHC EPGWFR CF +++ + + + ++RI + +
Sbjct: 404 CHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDR 437
|
Length = 447 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 330 bits (846), Expect = e-110
Identities = 146/331 (44%), Positives = 228/331 (68%), Gaps = 4/331 (1%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A FM + G V+FDP ++V++ GAT A E + FCLAD G+ L+PSPYY FDRD+R+
Sbjct: 103 IAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRW 162
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE+IPV C S+DNF ++ A D A+ +A++ KV+G+++ NP+NP+G ++ ++TL
Sbjct: 163 RTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLT 222
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI---LEAEEVDKDRVHIIYGLSKDLS 177
L+ F KNIH++ DEIY ++F +FVS+AE+ ++ EV+ D +HI+Y LSKD+
Sbjct: 223 NLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMG 282
Query: 178 LPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237
LPGFR G++YS+N+SV++ A+K++ F +S+ TQ +L SMLSD +F+ +L + RR+
Sbjct: 283 LPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGI 342
Query: 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSY-SEKGELELWDKLLNIAKINVTPG 296
+ F G+K+ I C S+AGL+ W D+ L+ S + E+ELW +++ K+NV+PG
Sbjct: 343 RHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPG 402
Query: 297 SACHCIEPGWFRCCFTSLTHEDIPLVIERIQ 327
S+ C EPGWFR CF ++ + + + + RIQ
Sbjct: 403 SSFRCTEPGWFRICFANMDDDTLHVALGRIQ 433
|
Length = 496 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 4e-75
Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 20/316 (6%)
Query: 13 VSFDP-SQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVH 70
+ D + +V +GA +E L F L + G+A+LVP+P YP + R R G E++
Sbjct: 60 LKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLA-GGEVVRYP 118
Query: 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
S+++F AL+ A +A + + +L +P NP G + E L +LLD A+E N
Sbjct: 119 LYSSNDFHLDFDALEAALKEATEG---NKVVLHTSPHNPTGTVATLEELEKLLDLAKEHN 175
Query: 131 IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN 190
I ++ DE Y G +FG+ + V+ +L + + ++ SK L G+R G I N
Sbjct: 176 ILLLVDEAYAGFVFGSLDAVATRALLA----EGPNLLVVGSFSKAFGLAGWRVGYILG-N 230
Query: 191 ESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG 250
+V++ +KL R S Q + LSD + LE ++RIK+ D GL+ G
Sbjct: 231 AAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAG 290
Query: 251 IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310
+ S AG + + L L LL + VTPGS+ PGW R
Sbjct: 291 LSVLPSQAGFFLLTGLDPEA-------ALALAQVLLEEVGVYVTPGSSFGG--PGWLRIT 341
Query: 311 FTSLTHEDIPLVIERI 326
T E++ ++E I
Sbjct: 342 VAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 7e-62
Identities = 93/330 (28%), Positives = 154/330 (46%), Gaps = 28/330 (8%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
A ++ + G V P +IV+T GA A+ +L L + G+ +LVP P YPG++ R
Sbjct: 46 AEWLGRRGGVDV--PPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLA 103
Query: 62 TGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYE 121
G E++PV F + L+ A K + + + NP NP G ++ E L E
Sbjct: 104 -GAEVVPVPLDEEGGFLLDLELLEAAKTP------KTKLLYLNNPNNPTGAVLSEEELEE 156
Query: 122 LLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF 181
L + A++ I +ISDE Y ++ E ++A + +RV ++ SK LPG
Sbjct: 157 LAELAKKHGILIISDEAYAELVYDGEPPPALALLD-----AYERVIVLRSFSKTFGLPGL 211
Query: 182 RTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLETNKRRIKKLY 239
R G + + E +L KKL + + T Q + L D +E+LE + R ++
Sbjct: 212 RIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDG---EEHLEELRERYRRRR 268
Query: 240 DSFVAGLKQLG-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
D+ + LK+LG + + S G + W D+ E ++LL A + V PGSA
Sbjct: 269 DALLEALKELGPLVVVKPSGGFFLWLDLPEGDDE-------EFLERLLLEAGVVVRPGSA 321
Query: 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQK 328
G+ R F + E++ +ER+ +
Sbjct: 322 FGEGGEGFVRLSFATPE-EELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 5e-54
Identities = 82/329 (24%), Positives = 145/329 (44%), Gaps = 26/329 (7%)
Query: 13 VSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHC 71
+ DP +I++TAGA A+ + L + G+ +L+P P YP ++ ++ G + +PV
Sbjct: 84 LDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLA-GGKPVPVPL 142
Query: 72 RSTDN-FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
+N F + L+ A K + I++ +P NP G + +E L +++ ARE +
Sbjct: 143 DEEENGFKPDLEDLEAAITP------KTKAIILNSPNNPTGAVYSKEELKAIVELAREHD 196
Query: 131 IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN 190
I +ISDEIY ++ E S+ E+ +DR I SK + G+R G +
Sbjct: 197 IIIISDEIYEELVYDGAEHPSILEL----AGARDRTITINSFSKTYGMTGWRIGWVVGPP 252
Query: 191 ESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248
E ++AA +KL P Q I+ L+ + E +E + ++ D V L +
Sbjct: 253 EELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNE 311
Query: 249 L-GIRCSES-SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA-CHCIEPG 305
+ G+ + Y + + L+ S E KLL A + V PGS G
Sbjct: 312 IGGLSVVKPPEGAFYLFPKIPELLDS------EEFAKKLLEEAGVAVVPGSGFGEPPGEG 365
Query: 306 WFRCCFTSLTHEDIPLVIERIQKVAETCK 334
+ R + E + + R+ + +
Sbjct: 366 YVRLSLA-TSEETLEEALRRLARFLAEYR 393
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (367), Expect = 4e-40
Identities = 90/329 (27%), Positives = 163/329 (49%), Gaps = 29/329 (8%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
+ +DPSQ+++T GA A+ L D G+ +++P+PY+ + ++ GV + V
Sbjct: 87 LDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGV-PVFVPTG 145
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
+ F ++ L+ A K + +++ +P+NP G + E L + D A E +I
Sbjct: 146 EENGFKLTVEQLEAAITP------KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIW 199
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY--- 189
V+SDEIY ++ EF S+A + + E+ +DR + G SK ++ G+R G Y
Sbjct: 200 VLSDEIYEKLVYDGAEFTSIASL--SPEL-RDRTITVNGFSKAYAMTGWRLG----YAAG 252
Query: 190 NESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLK 247
+ ++ A KL + + + Q ++ L+ Q+ +E ++ ++ D V GL
Sbjct: 253 PKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGP---QDEVEEMRQAFEERRDLMVDGLN 309
Query: 248 QL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306
++ G+ C + Y + ++S L+ S LE + LL A + V PG A PG+
Sbjct: 310 EIPGLECPKPEGAFYVFPNVSKLLGK-SITDSLEFAEALLEEAGVAVVPGIAFG--APGY 366
Query: 307 FRCCF-TSLTHEDIPLVIERIQKVAETCK 334
R + TSL ED+ +ERI++ E+ K
Sbjct: 367 VRLSYATSL--EDLEEGLERIERFLESLK 393
|
Length = 393 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 4e-29
Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 27/260 (10%)
Query: 15 FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYP---GFDRDIRFRTGVELIPVHC 71
+P +I++T G + A+ + D G+ +LVP P+Y GF GV+++PV
Sbjct: 86 VEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFAT----SAGVKIVPVTT 141
Query: 72 RSTDNFAF-SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
+ + F S +++ K + ILI NP NP G + +E L L + A++ +
Sbjct: 142 KIEEGFHLPSKEEIEKLITP------KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHD 195
Query: 131 IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN 190
+ +ISDE+Y ++ ++ S + E DRV II +SK S G R G + S N
Sbjct: 196 LFLISDEVYREFVYDGLKYTSALSLEGLE----DRVIIIDSVSKRYSACGARIGCLISKN 251
Query: 191 ESVLAAAKKLTRFCS--ISAPT-QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLK 247
+ ++AAA K C +S PT +++ + L DT + Y + + KK D L
Sbjct: 252 KELIAAAMK---LCQARLSPPTLEQIGAAALLDT--PESYFDEVREEYKKRRDILYEELN 306
Query: 248 QL-GIRCSESSAGLYCWADM 266
++ G+ C + Y A +
Sbjct: 307 KIPGVVCEKPKGAFYIIAKL 326
|
Length = 397 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 8e-27
Identities = 81/327 (24%), Positives = 149/327 (45%), Gaps = 27/327 (8%)
Query: 12 AVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVH 70
AVS+DP +I++T GA+ A+++ + + G+ +L+ P + + + GV +PV
Sbjct: 75 AVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVP-VPVA 133
Query: 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
+ F ++ A K + IL+C+P NP G ++ + L E+ + +
Sbjct: 134 TTLENEFKVQPAQIEAAITA------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHD 187
Query: 131 IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN 190
+ V+SDEIY + +E + S A I + ++R +I G SK ++ G+R G I +
Sbjct: 188 LIVLSDEIYAELTY-DEAYTSFASI----KGMRERTILISGFSKGFAMTGWRLGFIAAPV 242
Query: 191 ESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG 250
A K+ ++ + APT + L + + + + +K + FV ++G
Sbjct: 243 Y-FSEAMLKIHQYSMMCAPTMAQF-AALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIG 300
Query: 251 IRCSESSAGLYCWADMSGLIPSYSEKG--ELELWDKLLNIAKINVTPGSACHCIEPGWFR 308
+ C Y + PS S G E ++LL K+ V PGS G+ R
Sbjct: 301 LTCHVPGGAFYAF-------PSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIR 353
Query: 309 CCF-TSLTHEDIPLVIERIQKVAETCK 334
C + TSL + ++R+++ E K
Sbjct: 354 CSYATSLEQ--LQEAMKRMKRFVENKK 378
|
Length = 378 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 33/331 (9%)
Query: 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73
+VLT+G + A+EI LA+ G +LVP P +P +D F +G+E+
Sbjct: 93 KLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAF-SGLEVRLYDLLP 151
Query: 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHV 133
++ + L+ ++ K I++ NP+NP G++ R+ L ++ + A + I +
Sbjct: 152 EKDWEIDLDGLESLADE------KTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPI 205
Query: 134 ISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN--- 190
I+DEIYG +FG+ F+ MA A V V + G+SK +PG+R G I ++
Sbjct: 206 IADEIYGHMVFGDAPFIPMASF--ASIVP---VLSLGGISKRWVVPGWRLGWIIIHDPHG 260
Query: 191 ---ESVLAAAKKLT-RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246
++VL K L R + Q L +L +T QE+ + +K + L
Sbjct: 261 IFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCYEEL 318
Query: 247 KQL-GIRCSESSAGLYCWADMSGLIPSYSE-KGELELWDKLLNIAKINVTPGSACHCIE- 303
K + G+ C + +Y + + + E K +++ +KL + PGS
Sbjct: 319 KDIPGLVCPKPEGAMYLMVKLE--LELFPEIKDDVDFCEKLAREESVICLPGS---AFGL 373
Query: 304 PGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
P W R T ++ E ++ E C+
Sbjct: 374 PNWVRITITVPES----MLEEACSRIKEFCE 400
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 86/307 (28%), Positives = 136/307 (44%), Gaps = 29/307 (9%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
V P + +TA T A++++ L D G+ +L+P P YP + ++F GV PV R
Sbjct: 89 VDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGV---PVEYR 145
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
+ + + D +K K + I + NP NP G + ++TL E+LD A E ++
Sbjct: 146 TIEEEGWQPDIDDIR----KKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLP 201
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES 192
VISDEIY + + VS + ++V V ++ GLSK G+R G IY +
Sbjct: 202 VISDEIYDLMTY-EGKHVSPGSL--TKDVP---VIVMNGLSKVYFATGWRLGYIYFVDPE 255
Query: 193 -----VLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245
V A KL R C + P Q I+ L+ +YLE +++K+ D
Sbjct: 256 GKLAEVREAIDKLARIRLCP-NTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYKR 311
Query: 246 LKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304
L ++ GI ++ Y + I K + E +L+ A + GS
Sbjct: 312 LNEIPGISTTKPQGAFYIFPR----IEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGA 367
Query: 305 GWFRCCF 311
G FR F
Sbjct: 368 GHFRLVF 374
|
Length = 398 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 78/284 (27%), Positives = 136/284 (47%), Gaps = 44/284 (15%)
Query: 1 MAGFMSQVLGQAVS----------FDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSP 49
MAG + L QA + + P ++I++T GAT A+ + + G+ +L+P+P
Sbjct: 66 MAGLLE--LRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAP 123
Query: 50 YYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA--LDQAFNQARKRGVKVRGILICNPA 107
YPG++ + G E++ + D F +T L++A + +G K++ +++ PA
Sbjct: 124 AYPGYEPIVNL-VGAEIVEIDTTEND---FVLTPEMLEKAILE---QGDKLKAVILNYPA 176
Query: 108 NPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVH 167
NP G RE + L D ++ +I VISDE+Y + E VS+AE L D+
Sbjct: 177 NPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL------PDQTI 230
Query: 168 IIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISMLSDTK--- 222
+I GLSK ++ G+R G+I++ A K ++ +A T Q + L++ K
Sbjct: 231 LINGLSKSHAMTGWRIGLIFA-PAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDA 289
Query: 223 --FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWA 264
+EY+ KRR D + + LG + + Y +A
Sbjct: 290 LPMKKEYI---KRR-----DYIIEKMTDLGFKIIKPDGAFYIFA 325
|
Length = 391 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 75/325 (23%), Positives = 149/325 (45%), Gaps = 34/325 (10%)
Query: 20 IVLTAGATPAVEILCF-CLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA 78
+VL +G + A+ ++ L D G+ +LVP+P +P ++ + G+E+ +CR ++
Sbjct: 107 VVLCSGVSHAI-LMALTALCDEGDNILVPAPGFPHYETVCKA-YGIEMRFYNCRPEKDWE 164
Query: 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEI 138
+ + R + + +++ NP+NP G+ R+ + +++ E + +ISDEI
Sbjct: 165 ADLDEI------RRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEI 218
Query: 139 YGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTG-VIY----SYNESV 193
Y G +F F S+A+ + RV I+ G +K+L +PG+R G ++
Sbjct: 219 YAGMVFNGATFTSVADF----DTTVPRV-ILGGTAKNLVVPGWRLGWLLLVDPHGNGGDF 273
Query: 194 LAAAKKL-TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ-LGI 251
L K+L C + Q L L +T QE+LE ++++ + + +G+
Sbjct: 274 LDGMKRLGMLVCGPCSVVQAALGEALLNTP--QEHLEQIVAKLEEGAMVLYNHIGECIGL 331
Query: 252 RCSESSAGLYCWADMSGLIPSY--SEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRC 309
+ ++ MS L K ++E ++KLL + V PG H PG+ R
Sbjct: 332 SPTMPRGSMFL---MSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTR- 385
Query: 310 CFTSLTHEDIPLVIERIQKVAETCK 334
+ ++ E ++++ C+
Sbjct: 386 ---LTISRPVEVLREAVERIKAFCE 407
|
Length = 412 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 42/143 (29%), Positives = 81/143 (56%), Gaps = 3/143 (2%)
Query: 16 DPSQIVLTAGATPAVE-ILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74
DPS I LT GA+ ++ +L + D + +++P P YP + I G + +P +
Sbjct: 137 DPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQ-VPYYLDEE 195
Query: 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134
++ L++A+ QA + G+ R +++ NP NP G ++ R+ + E++ F EK I ++
Sbjct: 196 KGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLM 255
Query: 135 SDEIYGGSIF-GNEEFVSMAEIL 156
+DE+Y +I+ G + F+S ++L
Sbjct: 256 ADEVYQENIYDGEKPFISFRKVL 278
|
Length = 481 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 1e-22
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 16 DPSQIVLTAGATPAV-EILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74
DP I LT GA+ V +IL + + +LVP P YP + I G L+P + +
Sbjct: 129 DPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGT-LVPYYLEES 187
Query: 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134
+N+ + L Q+ QAR +G+ VR ++I NP NP G + L E+L F ++ + ++
Sbjct: 188 ENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLL 247
Query: 135 SDEIYGGSIFGNEE-FVSMAEIL 156
DE+Y +I+ +E F+S ++L
Sbjct: 248 GDEVYQQNIYQDERPFISAKKVL 270
|
Length = 407 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 3e-21
Identities = 86/317 (27%), Positives = 131/317 (41%), Gaps = 57/317 (17%)
Query: 11 QAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELI 67
IV+T GA A+ + + + G+ ++V +PY+ + RF G +L+
Sbjct: 90 FGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEY----RFYVDNHGGKLV 145
Query: 68 PVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAR 127
V TD F + AL+ A K + ++I +P NP G + ETL L
Sbjct: 146 VVPTD-TDTFQPDLDALEAAITP------KTKAVIINSPNNPTGVVYSEETLKALAALLE 198
Query: 128 EKN------IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF 181
EK+ I++ISDE Y ++ E + + D ++Y SK LSLPG
Sbjct: 199 EKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYY-------DNSIVVYSFSKSLSLPGE 251
Query: 182 RTGVIYSYNESVLAAAKKLT---RFCS-----ISAPT--QRLLISMLSDTKFIQEYLETN 231
R G I E + A L F + ++AP QR++ L T + Y
Sbjct: 252 RIGYIAVNPE--MEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATVDVSIY---- 305
Query: 232 KRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI 291
KR LYD GL +LG C + Y L P E+ ++ +K +
Sbjct: 306 KRNRDLLYD----GLTELGFECVKPQGAFY-------LFPKSPEEDDVAFCEKAKK-HNL 353
Query: 292 NVTPGSACHCIEPGWFR 308
+ PGS C PG+FR
Sbjct: 354 LLVPGSGFGC--PGYFR 368
|
Length = 394 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-20
Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 36/289 (12%)
Query: 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77
S+I++T GA+ A++I + + G +++P+P YPG++ IR G + + + RST F
Sbjct: 90 SEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRL-CGAKPVFIDTRST-GF 147
Query: 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDE 137
+ AL+ A + K R +++ P+NP G + +E L ++ D ++KNI V+SDE
Sbjct: 148 RLTAEALENAITE------KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDE 201
Query: 138 IYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAA 197
IY ++ + S+A E +++ +I GLSK S+ G+R G +++ +
Sbjct: 202 IYSELVY-EQPHTSIAHFPEM----REKTIVINGLSKSHSMTGWRIGFLFA-PSYLAKHI 255
Query: 198 KKLTRF-----CSISAPTQRLLISMLSDTKFIQEYL-ETNKRRIKKLYDSFVAGLKQLGI 251
K+ ++ SIS Q + L+ K + + K+R +Y+ L +G+
Sbjct: 256 LKVHQYNVTCASSIS---QYAALEALTAGKDDAKMMRHQYKKRRDYVYNR----LISMGL 308
Query: 252 RCSESSAGLYCWADMSGLIPSYSEKGE--LELWDKLLNIAKINVTPGSA 298
+ + Y L PS + L+ A + V PGSA
Sbjct: 309 DVEKPTGAFY-------LFPSIGHFTMSSFDFALDLVEEAGLAVVPGSA 350
|
Length = 387 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 2e-20
Identities = 83/333 (24%), Positives = 147/333 (44%), Gaps = 38/333 (11%)
Query: 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73
+ +VL +G + A+E+ LA+ G +LVP P +P + R + G+E+ +
Sbjct: 92 PIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLY-RTLAESMGIEVKLYNLLP 150
Query: 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHV 133
++ + L+ ++ K +++ NP+NP G++ R+ L E+L A + + +
Sbjct: 151 DKSWEIDLKQLESLIDE------KTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPI 204
Query: 134 ISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY--GLSKDLSLPGFRTGVIYSYNE 191
I+DEIYG +F F +A + V I+ GL+K +PG+R G I ++
Sbjct: 205 IADEIYGDMVFSGATFEPVASL-------SSNVPILSCGGLAKRWLVPGWRLGWIIIHDR 257
Query: 192 -----SVLAAAKKLT-RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245
+ KL+ R Q L S+L T QEY + ++
Sbjct: 258 RGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRTP--QEYFDGTLSVLESNAMLCYGA 315
Query: 246 LKQL-GIRCSESSAGLYCWADMSGL-IPSYSE-KGELELWDKLLNIAKINVTPGSACHCI 302
L + G++ S +Y M G+ + + E K ++E ++L+ + PGS C
Sbjct: 316 LAAVPGLQPVMPSGAMYM---MVGIEMEHFPEFKNDVEFTERLIAEQSVFCLPGS---CF 369
Query: 303 E-PGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
E PG+FR T + + RIQ E C+
Sbjct: 370 EYPGFFRVVLT-VPVVMMEEACSRIQ---EFCE 398
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 4e-20
Identities = 77/337 (22%), Positives = 136/337 (40%), Gaps = 47/337 (13%)
Query: 10 GQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPV 69
+ +S +P QIV+T+GA A+++L L D G+ +LV P YPG + + G +IPV
Sbjct: 148 RRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALE-ALGARVIPV 206
Query: 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPA--NPVGNIIPRETLYELLDFAR 127
D AL++A Q + + V P NP G + E LL A
Sbjct: 207 ---PVDEDGIDPEALEEALAQWKPKAV------YVTPTFQNPTGVTMSLERRKALLALAE 257
Query: 128 EKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY--GLSKDLSLPGFRTGV 185
+ ++ +I D+ YG + + + RV IY SK L+ PG R G
Sbjct: 258 KYDVLIIEDDYYGELRYDGPPPPPLKALD-----APGRV--IYLGSFSKTLA-PGLRLGY 309
Query: 186 IYSYNESVLAAAKKLTRFCSI--SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY---- 239
+ + ++ +L + + S+ +Q L + L + + + RR+++ Y
Sbjct: 310 VVA-PPELIEKLLRLKQAADLGPSSLSQAALAAFLLS-----GHYDRHLRRLRREYARRR 363
Query: 240 DSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296
D+ + L + + GL+ W + L + L + VTP
Sbjct: 364 DALLEALAEYLPELATWTRPEGGLFLWLE---LPEGIDARELLA----AALEKGVVVTPL 416
Query: 297 SACHCIEPGW---FRCCFTSLTHEDIPLVIERIQKVA 330
+ + R F+S + E+I I+R+ +
Sbjct: 417 GSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALL 453
|
Length = 459 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 6e-20
Identities = 74/290 (25%), Positives = 128/290 (44%), Gaps = 28/290 (9%)
Query: 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73
SF ++I+ T GA + + + D G+ +++ PY+ + I G P+ +
Sbjct: 86 SFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGG---KPIILET 142
Query: 74 T--DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
D F ++ L+ K + I++ +P NP G + +ETL E+ A E ++
Sbjct: 143 YEEDGFQINVKKLEALITS------KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDL 196
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
+ISDE+Y G F E+FV MA + +R SKD ++ G+R G + + +
Sbjct: 197 FIISDEVYDGFSF-YEDFVPMATL----AGMPERTITFGSFSKDFAMTGWRIGYVIA-PD 250
Query: 192 SVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYL-ETNKRRIKKLYDSFVAGLKQ 248
++ AK + SAPT QR I L I + E ++R++ Y + +
Sbjct: 251 YIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKR-IESIPN 309
Query: 249 LGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
L + + S + +GL +E +KLL A + V PG A
Sbjct: 310 LSLHPPKGSIYAFINIKKTGL-------SSVEFCEKLLKEAHVLVIPGKA 352
|
Length = 384 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 7e-20
Identities = 74/274 (27%), Positives = 122/274 (44%), Gaps = 27/274 (9%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+AGF +Q G V DP +I++T G + A+ + L D G L+ P YP +R
Sbjct: 78 IAGFYAQRYG--VDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRL 135
Query: 61 RTGV-ELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETL 119
G +L+PV S + + +++ +N G L+ +PANP G ++ R+ L
Sbjct: 136 VEGAAQLVPVGPDS--RYQLTPALVERHWNA------DTVGALVASPANPTGTLLSRDEL 187
Query: 120 YELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLP 179
L R + H++ DEIY G +G V A +LE + D ++ SK +
Sbjct: 188 AALSQALRARGGHLVVDEIYHGLTYG----VDAASVLEVD----DDAFVLNSFSKYFGMT 239
Query: 180 GFRTGVIYSYNESVLAAAKKLTRFCSISAPT---QRLLISMLSDTKFIQEYLETNKRRIK 236
G+R G + + + + +KL + ISA T L +T I LE +
Sbjct: 240 GWRLGWLVA-PPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAI---LEARRAEFA 295
Query: 237 KLYDSFVAGLKQLGIRCS-ESSAGLYCWADMSGL 269
+ D + L++LG + E Y +AD+S
Sbjct: 296 RRRDFLLPALRELGFGIAVEPQGAFYLYADISAF 329
|
Length = 387 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 7e-19
Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 29/254 (11%)
Query: 15 FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74
DP +++ G+ +E+L + G+ +L+P P + ++ + G E++ V
Sbjct: 73 VDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLA-GAEVVKV---PL 128
Query: 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134
F + A+ A K + + +CNP NP G ++PRE L LL+ E + V+
Sbjct: 129 KEFRLDLDAILAAIRD------KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGL-VV 181
Query: 135 SDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYG--LSKDLSLPGFRTGVIYSYNES 192
DE Y EF + + E+ K ++I SK L G R G + N
Sbjct: 182 IDEAYI-------EFSPES----SLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIA-NPE 229
Query: 193 VLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIR 252
++AA K+ ++S+P I+ L D +YLE + RI++ + A LK LG+
Sbjct: 230 LIAALNKVRPPFNVSSPALAAAIAALRD----ADYLEESVERIREERERLYAALKALGLF 285
Query: 253 CSESSAGLYCWADM 266
S + +
Sbjct: 286 GVFPSQANFVLVRV 299
|
Length = 356 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 71/295 (24%), Positives = 114/295 (38%), Gaps = 31/295 (10%)
Query: 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73
P IV G P + + L G+ +++ +P YP F I+ G ++I
Sbjct: 80 EIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIK-LNGRKVIENPLVE 138
Query: 74 TDN-FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
D + AL++AF R V+ ++CNP NP G + +E L ++ + +
Sbjct: 139 DDGRYEIDFDALEKAFVDER-----VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVR 193
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES 192
VISDEI+ + G + + A + +E D + SK +L G + I N
Sbjct: 194 VISDEIHADLVLGGHKHIPFASL--SERF-ADNSITLTSASKTFNLAGLKCAYIIISNRE 250
Query: 193 VLAAA-KKLTRFCSISAPTQRLLISMLSDTKFIQEY------LETNKRRIKKLYDSFVAG 245
+ A K+L R S L Y L+ +K D
Sbjct: 251 LRAKFLKRLKR-------NGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADF 303
Query: 246 LKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
L + G++ +E W D L S EL + LL AK+ ++PGS
Sbjct: 304 LNKHLPGVKVTEPQGTYLAWLDCRELGLDDS---ELAEF--LLEEAKVALSPGST 353
|
Length = 388 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-18
Identities = 73/295 (24%), Positives = 128/295 (43%), Gaps = 36/295 (12%)
Query: 13 VSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHC 71
V + +++L G+ + L A+ G+ +LVP P Y ++ I+ G +
Sbjct: 88 VILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQM-AGATSYYMPL 146
Query: 72 RSTDNFAFSITALDQAFNQARKRGVKVRGILICN-PANPVGNIIPRETLYELLDFAREKN 130
+ ++F + + + K ++I N P NPV + + E++ FA++ N
Sbjct: 147 KKENDFLPDLELIPEEIADKAK-------MMILNFPGNPVPAMAHEDFFKEVIAFAKKHN 199
Query: 131 IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN 190
I V+ D Y F + +S + A+EV + I LSK SL G R G + N
Sbjct: 200 IIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVE----INSLSKSYSLAGSRIGYMIG-N 254
Query: 191 ESVLAAAKKLTRFCS-----ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245
E ++ A LT+F S + P Q+ + L + + E N+ ++ D+ V G
Sbjct: 255 EEIVRA---LTQFKSNTDYGVFLPIQKAACAALRNGA---AFCEKNRGIYQERRDTLVDG 308
Query: 246 LKQLGIRCSESSAGLYCWADMSGLIPSYSEKG--ELELWDKLLNIAKINVTPGSA 298
+ G + + ++ WA+ IP KG L L++ A + VTPG A
Sbjct: 309 FRTFGWNVDKPAGSMFVWAE----IP----KGWTSLSFAYALMDRANVVVTPGHA 355
|
Length = 399 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 83/305 (27%), Positives = 134/305 (43%), Gaps = 36/305 (11%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A + ++ G + P +IV+TAGA+ A+ + C L + G+ +L+P P YP +R F
Sbjct: 76 IAAWYARRFG--LDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPC-NR--HF 130
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
E PV S F +TA D G + RG+L+ +P+NP G I + L
Sbjct: 131 VAAAEGRPVLVPSGPAERFQLTAAD----VEAAWGERTRGVLLASPSNPTGTSIAPDELR 186
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
+++ R + I DEIY G + + VS A + D V I SK ++ G
Sbjct: 187 RIVEAVRARGGFTIVDEIYQGLSY-DAAPVS------ALSLGDD-VITINSFSKYFNMTG 238
Query: 181 FRTG--VIYSYNESVLAAAKKLTRFCSISAPT--QR-LLISMLSDTKFIQEYLETNKRRI 235
+R G V+ E+++ +KL + I A Q L DT + Y E +
Sbjct: 239 WRLGWLVV---PEALVGTFEKLAQNLFICASALAQHAALACFEPDT--LAIY-ERRRAEF 292
Query: 236 KKLYDSFVAGLKQLGIRCSESSAG-LYCWADMSGLIPSYSEKGELELWD---KLLNIAKI 291
K+ D V L+ LG + G Y +AD G+ + + +L+ A +
Sbjct: 293 KRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGV----AHPAAGDSAALTQAMLHDAGV 348
Query: 292 NVTPG 296
+ PG
Sbjct: 349 VLVPG 353
|
Length = 388 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 79/322 (24%), Positives = 138/322 (42%), Gaps = 27/322 (8%)
Query: 12 AVSFDPSQIVLT-AGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL-IPV 69
V DP VL+ G+ + + + G+ +LVP P YP + F G +P+
Sbjct: 85 GVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144
Query: 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK 129
+ + F A+ + + A+K + + I P NP G + P + EL++FA+E
Sbjct: 145 --KEENGFLPDFDAIPE--DIAKK----AKLMFINYPNNPTGAVAPLKFFKELVEFAKEY 196
Query: 130 NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189
NI V D Y F + S E+ A++V + + LSK ++ G+R G +
Sbjct: 197 NIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIE----FHSLSKTYNMTGWRIG-MAVG 251
Query: 190 NESVLAAAKKL-TRFCS-ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLK 247
N ++A K+ T S + Q I+ L+ Q+ ++ ++ ++ D + LK
Sbjct: 252 NADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALK 308
Query: 248 QLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307
++GI + A Y W + S E +LL + VTPG G+
Sbjct: 309 KIGIDVEKPKATFYVWVPVPEGYTS------AEFAARLLEETGVVVTPGVGFGEYGEGYI 362
Query: 308 RCCFTSLTHEDIPLVIERIQKV 329
R T + E + + RI+K+
Sbjct: 363 RISLT-VPDERLEEAVARIKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 7e-18
Identities = 83/354 (23%), Positives = 158/354 (44%), Gaps = 53/354 (14%)
Query: 16 DPSQIVLTAGATPAVEILC-FCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74
DP+ I LT GA+PAV ++ + + +L P P YP + I G L+P +
Sbjct: 190 DPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 248
Query: 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134
+ I+ L + AR +G+ VR +++ NP NP G ++ E ++++F +++ + ++
Sbjct: 249 TGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLL 308
Query: 135 SDEIYGGSIF-GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF------------ 181
+DE+Y +++ +++F S ++ + + YG KD+SL F
Sbjct: 309 ADEVYQENVYVPDKKFHSFKKVARS---------MGYG-EKDISLVSFQSVSKGYYGECG 358
Query: 182 -RTGV--IYSYNESVLAAAKKLTRFCSISAPTQRLLISML---------SDTKFIQE--- 226
R G + + V K+ S + ++L S++ S ++ E
Sbjct: 359 KRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDG 418
Query: 227 YLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMS----GLIPSYSEKGELELW 282
L + RR K L D+ G+ C+++ +Y + + + + + K + +
Sbjct: 419 ILSSLARRAKTLEDALN---SLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAF 475
Query: 283 --DKLLNIAKINVTPGSACHCIEPGW-FRCCFTSLTHED-IPLVIERIQKVAET 332
+LLN I V PGS + W FRC T L ED IP ++ R+ + ++
Sbjct: 476 YCKRLLNATGIVVVPGSGFGQVPGTWHFRC--TILPQEDKIPAIVSRLTEFHKS 527
|
Length = 534 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 7e-18
Identities = 79/301 (26%), Positives = 132/301 (43%), Gaps = 47/301 (15%)
Query: 12 AVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYP----GF---DRDIRFRTG 63
V DP S+ ++T G+ + L DHG+ +LVP+P YP G +R
Sbjct: 85 DVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVR---S 141
Query: 64 VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICN-PANPVGNIIPRETLYEL 122
V L+ D F L++A ++ + ++I P+NP + E ++
Sbjct: 142 VPLVE----GVDFFN----ELERAIRESYPK----PKMMILGFPSNPTAQCVELEFFEKV 189
Query: 123 LDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFR 182
+ A+ ++ V+ D Y ++ + S+ ++ A++V + + LSK ++ G+R
Sbjct: 190 VALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVE----FFTLSKSYNMAGWR 245
Query: 183 TGVIYSYNESVLAAAKKLTRFCS-----ISAPTQRLLISML-SDTKFIQEYLETNKRRIK 236
G + N +++A L R S P Q I+ L D + +++ E KRR
Sbjct: 246 IGFMVG-NPELVSA---LARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRD 301
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP-SYSEKGELELWDKLLNIAKINVTP 295
L GL + G A +Y WA IP Y+ G LE KLLN AK+ V+P
Sbjct: 302 VLVK----GLHEAGWMVEMPKASMYVWAK----IPEPYAAMGSLEFAKKLLNEAKVCVSP 353
Query: 296 G 296
G
Sbjct: 354 G 354
|
Length = 395 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 9e-18
Identities = 74/313 (23%), Positives = 127/313 (40%), Gaps = 34/313 (10%)
Query: 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHG---NALLVPSPYYPGFDRD 57
+G+ + G V DP +Q++ +AG+ A+ D ++ +P YP ++R
Sbjct: 46 SGWFERRFG--VKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERG 103
Query: 58 IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE 117
F G E V + D F + ++++ + + + + I P NP G PR
Sbjct: 104 ALF-AGGEPTAVKLKKEDGFLLRLEKVEKSILE------ETKIVWINYPHNPTGATAPRS 156
Query: 118 TLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLS 177
L E + RE I + SDE Y FG E S EV + V + LSK
Sbjct: 157 YLKETIAMCREHGIILCSDECYTEIYFG-EPPHSAL------EVGIENVLAFHSLSKRSG 209
Query: 178 LPGFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLETNKRRI 235
+ G+R+G + + +E +++ +KL +++P Q + SD + E + KR+
Sbjct: 210 MTGYRSGFV-AGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRK- 267
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
D F+ ++G+ A Y W + I + + L I V P
Sbjct: 268 ---RDLFIEFFNKVGLEYLYPDATFYLWVKVPSGIDAKD-------YALRLLENGIVVAP 317
Query: 296 GSACHCIEPGWFR 308
G E G+ R
Sbjct: 318 GENFGSGEEGYVR 330
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 57/263 (21%), Positives = 105/263 (39%), Gaps = 23/263 (8%)
Query: 15 FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74
DP IV G P++ L G ++V +P YP F ++ G EL+ +
Sbjct: 81 IDPEWIVFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPFLSAVK-SNGRELVLNPLKLD 139
Query: 75 DN-FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHV 133
+ F + L+ A + K R +L+C+P NPVG + RE L L + N+ V
Sbjct: 140 PGRYRFDLEDLEDAITE------KARLLLLCSPHNPVGRVWTREELTRLAELCLRHNVVV 193
Query: 134 ISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV 193
+SDEI+ ++ + + +A + + E+ +R + K ++ G N +
Sbjct: 194 VSDEIHADLVYPPNKHIPLASL--SPEI-AERTVTLLSPGKTFNIAGLNISFAIIPNPEL 250
Query: 194 LAAAKKLTRFCSISAPTQRLLISMLSDTKF-------IQEYLETNKRRIKKLYDSFVAGL 246
A ++ + I ++ + + + YL N+ ++ + L
Sbjct: 251 RRAFQEAAQRVHIQHGNLFGYVAFEAAYREGEPWLDALLAYLRGNRDLVE---EFIAKRL 307
Query: 247 KQLGIRCSESSAGLYCWADMSGL 269
Q+ +R E A W D L
Sbjct: 308 PQIRVRPPE--ATYLAWLDCRAL 328
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 4e-17
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG 53
+A FM++ G V FD IVL+AGAT A EI+ FC+AD G+A LVP+PYY
Sbjct: 101 IANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153
|
Length = 153 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 24/191 (12%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A ++S+ L +S I LTAG A+EI+ LA G +L+P P YP ++ F
Sbjct: 103 IAEYLSRDLPYELS--TDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVF 160
Query: 61 RTGVE-----LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIP 115
+G+E L+P D + AL A + V ++I NP NP G++
Sbjct: 161 -SGLEVRHFDLLPERGWEVD--LEGVEAL------ADENTV---AMVIINPNNPCGSVYS 208
Query: 116 RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKD 175
E L ++ + AR+ I VI+DE+Y FG++ FV M E V + +SK
Sbjct: 209 YEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAP-----VLTLGSISKR 263
Query: 176 LSLPGFRTGVI 186
+PG+R G I
Sbjct: 264 WVVPGWRLGWI 274
|
Length = 430 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-16
Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 30/256 (11%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
Q L DP QI+L G+ +E+L + G+A+LVP P Y ++ + G E+
Sbjct: 61 QALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIH-GAEV 119
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA 126
V ++ + A K+ + +C+P NP GN++ R + +L+
Sbjct: 120 --VKVPLDEDG----QLDLEDILVAIDDKPKL--VFLCSPNNPTGNLLSRSDIEAVLERT 171
Query: 127 REKNIHVISDEIYGGSIFGNEEFV---SMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRT 183
E + V+ DE YG EF S +L + + ++ LSK L G R
Sbjct: 172 PEDALVVV-DEAYG-------EFSGEPSTLPLLA----EYPNLIVLRTLSKAFGLAGLRI 219
Query: 184 GVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243
G + E + A K F ++S Q I+ L D FI++ +E ++LYD
Sbjct: 220 GYAIANAEIIDALNKVRAPF-NLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYD--- 275
Query: 244 AGLKQL-GIRCSESSA 258
GLK+L G+ S A
Sbjct: 276 -GLKKLPGLEVYPSDA 290
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-15
Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 36/289 (12%)
Query: 37 LADHGNALLVPSPYYPGFDRDIRFRTGVELIPVH--CRSTDNFAFSITALDQAFNQARKR 94
L D G+ +L+PSP YP + + G VH C + I + K
Sbjct: 228 LLDDGDEVLIPSPDYPLWTACVNLAGGT---AVHYRCDEQSEWYPDIDDIRS------KI 278
Query: 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154
+ + I+I NP NP G + PRE L +++D ARE + + SDEIY + E S+A
Sbjct: 279 TSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS 338
Query: 155 ILEAEEVDKDRVHIIY-GLSKDLSLPGFRTG-VIYSYNESVLAAAKKL---------TRF 203
+ D + + GLSK + G+R G +I S N+ + AK R
Sbjct: 339 LAP------DLFCVTFSGLSKSHMIAGYRIGWMILSGNKRI---AKDYIEGLNMLANMRL 389
Query: 204 CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYC 262
CS + P Q ++ + L + +++YL R+ + + L + GI + A Y
Sbjct: 390 CS-NVPAQSIVQTALGGHQSVKDYL-VPGGRVYEQRELVYNALNAIPGISAVKPKAAFYI 447
Query: 263 WADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCF 311
+ + ++ + + LL+ K+ + G+ + +P FR +
Sbjct: 448 FPKIDVKK--FNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY 494
|
Length = 517 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 34/293 (11%)
Query: 13 VSFDPSQ--IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVH 70
V+ DP +L G VE L CL + G+ +LVP P YP + + + +
Sbjct: 89 VTLDPETEVAILFGGKAGLVE-LPQCLMNPGDTILVPDPGYPDYLSGVAL-ARAQFETMP 146
Query: 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICN-PANPVGNIIPRETLYELLDFAREK 129
+ +NF T + + + K ++ N P NP G + + E + FA++
Sbjct: 147 LIAENNFLPDYTKIPEEVAEKAK-------LMYLNYPNNPTGAVATKAFFEETVAFAKKH 199
Query: 130 NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189
NI V+ D YG F ++ VS + A++V + +Y LSK ++ G+R
Sbjct: 200 NIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIE----LYTLSKTFNMAGWRVAFAVG- 254
Query: 190 NESVLAAAKKLTR--FCSISAPTQRLLI-SMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246
NESV+ A L F S+ Q I ++LSD + E + + R ++F++
Sbjct: 255 NESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRR----NAFISAC 310
Query: 247 KQLGIRCSESSAGLYCWADMSGLIPS-Y-SEKGELELWDKLLNIAKINVTPGS 297
+++G + W +P Y SE + D LL A + V PG+
Sbjct: 311 REIGWEVDAPKGSFFAWMP----VPKGYTSE----QFADLLLEKAHVAVAPGN 355
|
Length = 389 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 24/154 (15%)
Query: 98 VRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157
+ GIL+ NP NP G + P+E L E++D ARE ++ +I DEIY ++ ++ V ++E++
Sbjct: 172 IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVI- 230
Query: 158 AEEVDKDRVHIIY--GLSKDLSLPGFRTGVIYSYN-----------ESVLAAAKKLTRFC 204
V I G+SK+L PG R G I YN S+L A K+ C
Sbjct: 231 ------GDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNA--KMIEVC 282
Query: 205 SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238
S + P Q + ++S ++ + YL+ +R +K
Sbjct: 283 STTLP-QMAIPRIMSHPEY-KNYLKERNKRYEKR 314
|
Length = 433 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 83/343 (24%), Positives = 134/343 (39%), Gaps = 66/343 (19%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYP-------------GFDRDIRFRT 62
DP +I ++ GA V L L N + V P YP D D R+
Sbjct: 94 DPEEIFISDGAKCDVFRL-QSLFGPDNTVAVQDPVYPAYLDSNVMAGRAGVLDDDGRYS- 151
Query: 63 GVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYEL 122
++ + C + +NF + + + + I +C+P NP G ++ +E L EL
Sbjct: 152 --KITYLPCTAENNFIPEL---------PEEPHIDI--IYLCSPNNPTGTVLTKEQLKEL 198
Query: 123 LDFAREKNIHVISDEIYGGSIFGNEEFV--SMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
+D+A E ++ D Y S F ++ + S+ EI A + SK G
Sbjct: 199 VDYANEHGSLILFDAAY--SAFISDPSLPHSIFEIPGARFCAIE----FRSFSKTAGFTG 252
Query: 181 FRTG--VI-----YSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSD-----TKFIQE 226
R G V+ Y+ SV+ ++ T+F S P QR + +
Sbjct: 253 VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAGYAGEGLQPILEAIS 312
Query: 227 YLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLL 286
Y N R ++K ++ AG K G E + Y W I S+ + +D LL
Sbjct: 313 YYMENARILRKALEA--AGFKVYG---GEHAP--YLWVKTPEGISSW------DFFDFLL 359
Query: 287 NIAKINVTPGSACHCIEPGWFRCCFTSLTH-EDIPLVIERIQK 328
+ TPGS G+ R F++ E+I ERI++
Sbjct: 360 YEYHVVGTPGSGFGPSGEGFVR--FSAFGKRENIIEACERIKE 400
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 80/333 (24%), Positives = 127/333 (38%), Gaps = 48/333 (14%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-DHGNALLVPSPYYPGFDRDIRF 60
++ + G DP+ ++ G V L L G+ +++P YP ++
Sbjct: 66 VDWLERRRG-VPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYE----- 119
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
G L +T A T LD V I + +P NP G ++ + L
Sbjct: 120 -VGALL----AGATPVAADDPTELDP---------VGPDLIWLNSPGNPTGRVLSVDELR 165
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHI--IYGLSKDLSL 178
++ +ARE+ V SDE Y + VS IL+ D + ++ LSK +L
Sbjct: 166 AIVAWARERGAVVASDECYLELGWE-GRPVS---ILDPRVCGGDHTGLLAVHSLSKRSNL 221
Query: 179 PGFRTGVIYSYNESV--LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236
G+R G + V L +K + AP Q +++ L D ++ K R
Sbjct: 222 AGYRAGFVAGDPALVAELLTVRKHAGLM-VPAPVQAAMVAALGD----DGHVAEQKARYA 276
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAK--INVT 294
L++ G R S AGLY WA +GE + WD + +A+ I V
Sbjct: 277 ARRAQLKPALEKAGFRIDHSEAGLYLWA----------TRGE-DAWDTVDRLAELGILVA 325
Query: 295 PGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQ 327
PG R T+ T E I + R+
Sbjct: 326 PGDFYGPAGSQHVRVALTA-TDERIAAAVARLT 357
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 69/324 (21%), Positives = 136/324 (41%), Gaps = 44/324 (13%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A ++S++ G A P +I +T+ A+ + L G+ ++ +P +P +
Sbjct: 70 LARYVSRLHGVATP--PERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKI 127
Query: 61 ----RTGVELIPVHCRST---DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNI 113
V L T D +IT + R + I +P NP G
Sbjct: 128 LGARVVCVPLDFGGGGWTLDLDRLLAAITP-------------RTRALFINSPNNPTGWT 174
Query: 114 IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-SMAEILEAEEVDKDRVHIIYGL 172
R+ L +L R + +++DE+Y + S +I E + DR+ +
Sbjct: 175 ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPD----DRIIFVNSF 230
Query: 173 SKDLSLPGFRTGVIYSYNESVLAAAKKLTRF---CSISAPTQRLLISMLSDTK-FIQEYL 228
SK+ ++ G+R G + + ++ +KL + C ++ QR ++ L + + F+ E
Sbjct: 231 SKNWAMTGWRLGWLVA-PPALGQVLEKLIEYNTSC-VAQFVQRAAVAALDEGEDFVAE-- 286
Query: 229 ETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLN 287
R+++ D V L+ L G+ ++ +Y + + G+ S L L +L++
Sbjct: 287 --LVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVTDS------LALAKRLVD 338
Query: 288 IAKINVTPGSACHCIEPGWFRCCF 311
A + + PG+A G+ R CF
Sbjct: 339 EAGLGLAPGTAFGPGGEGFLRWCF 362
|
Length = 382 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 74.0 bits (181), Expect = 1e-14
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A +M++ L ++ P I LTAG +EI+ LA +L+P P +P +D +
Sbjct: 117 VADYMNRDLPHKLT--PEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAY 174
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
+G+E+ + + ++ ++ +++ NP NP GN+ + L
Sbjct: 175 -SGLEVRKFDLLPEKEWEIDLEGIEAIADE------NTVAMVVINPNNPCGNVYSHDHLK 227
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
++ + AR+ I VISDE+Y +IFG+ FVSM + V + G+SK +PG
Sbjct: 228 KVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVP-----VLTLAGISKGWVVPG 282
Query: 181 FRTGVI 186
++ G I
Sbjct: 283 WKIGWI 288
|
Length = 462 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 42/334 (12%)
Query: 12 AVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPY---YPGFDRDIRFRTGVELIP 68
+ + ++I + GA A+ + + G+ +++P+PY YP D+ +
Sbjct: 88 GLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYP----DMVLANDGTPVI 143
Query: 69 VHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLD-FAR 127
V C F + AL+ A + R +++ P+NP G + R L L D R
Sbjct: 144 VACPEEQGFKLTPEALEAAITP------RTRWLILNAPSNPTGAVYSRAELRALADVLLR 197
Query: 128 EKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIY 187
++ V++D+IY F +E +L A +DRV + G+SK ++ G+R G
Sbjct: 198 HPHVLVLTDDIYDHIRFDDE---PTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAA 254
Query: 188 SYNESVLAAAKKL-----TRFCSISAPTQRLLISML-SDTKFIQEYLETNKRRIKKLYDS 241
++AA KL + SIS Q + L D F+ E + K+R D
Sbjct: 255 G-PADLIAAINKLQSQSSSCPSSIS---QAAAAAALNGDQSFVTESVAVYKQR----RDY 306
Query: 242 FVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDK-----LLNIAKINVTP 295
+A L + G+ C Y + + +GLI + +G++ D+ LL+ A + V
Sbjct: 307 ALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQ 366
Query: 296 GSACHCIEPGWFRCCF-TSLTHEDIPLVIERIQK 328
G+A + + P +FR TSL E + RI++
Sbjct: 367 GTA-YGLSP-YFRLSIATSL--ETLEEACARIER 396
|
Length = 402 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 66/270 (24%), Positives = 117/270 (43%), Gaps = 43/270 (15%)
Query: 41 GNALLVPSPYYPGFDRDIRFR----TGVELIPVHCRSTDNFAFSITAL-DQAFNQARKRG 95
G+ +LVPSP YP FR G ++ P+ + +++ ++++ ++ QA+
Sbjct: 121 GDVVLVPSPAYPA-----HFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK--- 172
Query: 96 VKVRGILICN-PANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154
IL N P+NP PRE E++ FAR+ I ++ D Y F + S+ E
Sbjct: 173 -----ILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLE 227
Query: 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR------FCSISA 208
I A+++ + + LSK ++ G+R G + N ++ + L F ++
Sbjct: 228 IPGAKDIGVE----FHTLSKTYNMAGWRVGFVVG-NRHIIQGLRTLKTNLDYGIFSALQK 282
Query: 209 PTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSG 268
+ L L D YL+ + R + D + GL +LG + A +Y W
Sbjct: 283 AAETAL--QLPD-----SYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLW----- 330
Query: 269 LIPSYSEKGELELWDKLLNIAKINVTPGSA 298
+P G + +L + VTPG+A
Sbjct: 331 -VPCPVGMGSTDFALNVLQKTGVVVTPGNA 359
|
Length = 394 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-14
Identities = 63/256 (24%), Positives = 106/256 (41%), Gaps = 29/256 (11%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
A S++ G A+ P Q+ +T+G A LA G+ +++P P+Y F+ +
Sbjct: 77 AAHYSRLYGAAI--SPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWY--FNHKMWLD 132
Query: 62 T-GVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
G+ + + C A + + R I + P NP G + P E L+
Sbjct: 133 MLGIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAIALVTPNNPTGVVYPPELLH 186
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE----ILEAEEVDKDRVHIIYGLSKDL 176
EL D AR I +I DE Y +F S + + D VH +Y SK
Sbjct: 187 ELYDLARRHGIALILDETY-------RDFDSGGGAPHDLFADPDWDDTLVH-LYSFSKSY 238
Query: 177 SLPGFRTGVIYSYNESVLAAAKKLTRFCSISAP--TQRLLISMLSDTKFIQEYLETNKRR 234
+L G R G + + + + +A +K +I AP Q + L + + ++ N+
Sbjct: 239 ALTGHRVGAVVA-SPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRAGNRAE 294
Query: 235 IKKLYDSFVAGLKQLG 250
I + D+F A +L
Sbjct: 295 IARRRDAFRAVFARLP 310
|
Length = 386 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-14
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 15/193 (7%)
Query: 20 IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPV---HCRSTDN 76
+++T G A+ + G+ + + P Y + + F G E++PV + +
Sbjct: 105 LIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEG-EMVPVQLDYLSADKR 163
Query: 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISD 136
+ L++AF K GV+V L NP NP G + E + ++ AR VI D
Sbjct: 164 AGLDLDQLEEAF----KAGVRV--FLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVD 217
Query: 137 EIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAA 196
++Y ++ + L A +D + V I G SK SL G+R GV + + +++
Sbjct: 218 QLYSRLLYDGTSYTH----LRALPIDPENVITIMGPSKTESLSGYRLGVAFG-SPAIIDR 272
Query: 197 AKKLTRFCSISAP 209
+KL S+ A
Sbjct: 273 MEKLQAIVSLRAA 285
|
Length = 405 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-13
Identities = 71/327 (21%), Positives = 133/327 (40%), Gaps = 34/327 (10%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
V D +++TAGA A + L + G+ +++P P + + D + + I + R
Sbjct: 89 VDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKI-AEAKPIRIPLR 147
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
+ F L + + + R I+I P NP G + +E + D A + NI+
Sbjct: 148 EENEFQPDPDELLELITK------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIY 201
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES 192
++SDE Y ++ + M + D + SK ++ G+R G + + +
Sbjct: 202 ILSDEPYEHFLYEGAKHYPMIKYA------PDNTILANSFSKTFAMTGWRLGFVIAPEQV 255
Query: 193 VLAAAK-------KLTRFCSISAPTQ-RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244
+ K + F I+ R S + + +EY E K +K+L
Sbjct: 256 IKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLK----- 310
Query: 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304
+ I+ E Y +A++ S + E W LL A++ V PG+A
Sbjct: 311 --EMPHIKVFEPKGAFYVFANIDETGMSSEDFAE---W--LLEKARVVVIPGTAFGKAGE 363
Query: 305 GWFRCCFTSLTHEDIPLVIERIQKVAE 331
G+ R + + + E + +ER++K E
Sbjct: 364 GYIRISYAT-SKEKLIEAMERMEKALE 389
|
Length = 391 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 68/287 (23%), Positives = 112/287 (39%), Gaps = 31/287 (10%)
Query: 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77
IV+TAG+ A + D G+ +++ +PYY + I P+ + DN+
Sbjct: 90 QAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQ---PILVPTDDNY 146
Query: 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDE 137
A++QA K R I+ +P NP G + P L + E I+ ISDE
Sbjct: 147 QLQPEAIEQAITP------KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDE 200
Query: 138 IYGGSIFGNEEFVSMAEILEAEEVDKDRVHII--YGLSKDLSLPGFRTGVIYSYNESVLA 195
Y + + S I + H I Y LSK +R G + +L
Sbjct: 201 AYEYFTYDGVKHFSPGSIPGSGN------HTISLYSLSKAYGFASWRIGYM-VIPIHLLE 253
Query: 196 AAKKLTRFCSISAP--TQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRC 253
A KK+ I P +Q + L K Y + + I ++ + L QL RC
Sbjct: 254 AIKKIQDTILICPPVVSQYAALGALQVGK---SYCQQHLPEIAQVRQILLKSLGQLQDRC 310
Query: 254 --SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
++ YC + ++ + EL +L+ ++ V PG+
Sbjct: 311 TLHPANGAFYC------FLKVNTDLNDFELVKQLIREYRVAVIPGTT 351
|
Length = 389 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 87/327 (26%), Positives = 141/327 (43%), Gaps = 42/327 (12%)
Query: 13 VSFDPSQIVLTA-GATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHC 71
V DP V++ G+ + + + G+ +LVP P YP + F G E +
Sbjct: 88 VELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIF-AGGEPYFMPL 146
Query: 72 RSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
+ + F + A+ + + A+K K+ + I P NP G + E E++DFA++ +I
Sbjct: 147 KEENGFLPDLDAIPE--DVAKK--AKL--MFINYPNNPTGAVADLEFFEEVVDFAKKYDI 200
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHI-IYGLSKDLSLPGFRTGVIYSYN 190
V D Y + + S LE KD V I + LSK ++ G+R G N
Sbjct: 201 IVCHDAAYSEIAYDGYKPPS---FLEVPGA-KD-VGIEFHSLSKTYNMTGWRIGFAVG-N 254
Query: 191 ESVLAAAKKLTRFCS-----ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245
++A L + S + Q I+ L+ QE +E ++ ++ D V G
Sbjct: 255 ADLIAG---LGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEG 308
Query: 246 LKQLGIRCSESSAGLYCWADMSGLIP-SYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304
L++LG+ A Y WA +P Y+ E LL+ A + VTPG+
Sbjct: 309 LRKLGLEVEPPKATFYVWAP----VPKGYT---SAEFATLLLDKAGVVVTPGNGFGEYGE 361
Query: 305 GWFRCCFTSLTHEDIPLVIERIQKVAE 331
G+FR +LT D ERI++ E
Sbjct: 362 GYFR---IALTVPD-----ERIEEAVE 380
|
Length = 385 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 16/194 (8%)
Query: 45 LVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILIC 104
L+ +P + ++R ++ E+ NFA + L++ K + + + +C
Sbjct: 97 LILAPTFAEYERALK-AFDAEIEYAELTEETNFAANEIVLEEI-----KEEIDL--VFLC 148
Query: 105 NPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164
NP NP G +I +E + ++LD ++NI++I DE + + NE SM LE +
Sbjct: 149 NPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETI-SMINYLE----NFK 203
Query: 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFI 224
+ II +K ++PG R G + N+++ ++ SI+ ++L D ++I
Sbjct: 204 NLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDKEYI 263
Query: 225 Q---EYLETNKRRI 235
+ ++++ K +
Sbjct: 264 KKTIQWIKEEKDFL 277
|
Length = 354 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 6e-12
Identities = 68/304 (22%), Positives = 127/304 (41%), Gaps = 33/304 (10%)
Query: 1 MAGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYP----GFD 55
A + ++ G V +P +Q+V T G+ + + G+ +L P+P YP GF
Sbjct: 77 QAAYYARRFG--VKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGF- 133
Query: 56 RDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIP 115
G + V + F AL++A + + + +++ P+NP +
Sbjct: 134 ----IMAGGVIRSVPAEPDEEF---FPALERAVRHSIPKPI---ALIVNYPSNPTAYVAD 183
Query: 116 RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKD 175
+ +++ FA++ +I ++SD Y F S+ ++ A++V + +SK
Sbjct: 184 LDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVE----FTSMSKT 239
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISA--PTQRLLISMLS-DTKFIQEYLETNK 232
S+ G+R G NE ++AA ++ + A P Q + L+ I E E K
Sbjct: 240 FSMAGWRMGFAVG-NERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYK 298
Query: 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292
+R D V + G +A ++ WA + ++ G LE L+ A +
Sbjct: 299 KR----RDVLVESFGRAGWDIPPPAASMFAWAP---IPEAFRHLGSLEFSKLLVEKADVA 351
Query: 293 VTPG 296
V PG
Sbjct: 352 VAPG 355
|
Length = 405 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 8e-12
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 24/154 (15%)
Query: 37 LADHGNALLVPSPYYPGFDRDIRFRTGVEL---IPVH--CRSTDNFAFSITALDQAFNQA 91
L ++G+ +LVP+P YP + V L PVH C + + +
Sbjct: 115 LLNNGDEVLVPAPDYP------LWTAAVSLSGGKPVHYLCDEEAGWFPDLDDI------R 162
Query: 92 RKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151
K + + I+I NP NP G + +E L E+++ AR+ N+ + +DEIY ++ +S
Sbjct: 163 SKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHIS 222
Query: 152 MAEILEAEEVDKDRVHIIY-GLSKDLSLPGFRTG 184
+A + A ++ + + + GLSK + GFR G
Sbjct: 223 IASL--APDL----LCVTFNGLSKAYRVAGFRVG 250
|
Length = 404 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 13 VSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHC 71
+ +DP +++++T GAT A+ L + G+ +L+ PYY + I +PV
Sbjct: 80 LEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHR-VPVPL 138
Query: 72 RSTDN-FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
FA + AL A + R +++ +P NP G ++ L + + A E +
Sbjct: 139 VPDGRGFALDLDALRAAV------TPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHD 192
Query: 131 IHVISDEIYGGSIFGNEEFVSMA 153
+ VI+DE+Y +F + +A
Sbjct: 193 LLVITDEVYEHLVFDGARHLPLA 215
|
Length = 387 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 49/253 (19%)
Query: 16 DPSQIVLTAGATPAVEIL--CFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR- 72
P Q++++ GA +E+L FC L P Y G + E I V R
Sbjct: 73 KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTY--GM-----YSVSAETIGVEIRT 125
Query: 73 --STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
+ DN+ + A+ GVKV + +C+P NP GN+I + L LL+ R K
Sbjct: 126 VPTLDNWQLDLPAI-----ADNLDGVKV--VYVCSPNNPTGNLINPQDLRTLLELTRGKA 178
Query: 131 IHVISDEIYGGSIFGNEEF---VSMAEILEAEEVDKDRVH--IIYGLSKDLSLPGFRTGV 185
I V++DE Y I EF S+A L + H I+ LSK +L G R G
Sbjct: 179 I-VVADEAY---I----EFCPQASLAGWL------AEYPHLVILRTLSKAFALAGLRCGF 224
Query: 186 IYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS---F 242
+ NE V+ K+ +S P + LS + + + R+ ++ +
Sbjct: 225 TLA-NEEVINLLLKVIAPYPLSTPVADIAAQALSP-----QGIAAMRERVAEINANRQWL 278
Query: 243 VAGLKQLGIRCSE 255
+A LK+ I C E
Sbjct: 279 IAALKE--IPCVE 289
|
Length = 351 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 2e-11
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A ++S+ L +S D + +T+G T A+++ LA G +L+P P +P ++ F
Sbjct: 82 IAEYLSRDLPYKLSLD--DVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAF 139
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
R +E+ V + + A++ +Q ++I NP NP GN+ + L
Sbjct: 140 R-HLEVRYVDLLPEKGWEVDLDAVEALADQ------NTVALVIINPGNPCGNVYSYQHLK 192
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY--GLSKDLSL 178
++ + A + I VI+DE+YG FG+ FV M V V ++ LSK +
Sbjct: 193 KIAETAEKLKILVIADEVYGHLAFGSNPFVPMG-------VFGSIVPVLTLGSLSKRWIV 245
Query: 179 PGFRTG 184
PG+R G
Sbjct: 246 PGWRLG 251
|
Length = 409 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 68/270 (25%), Positives = 114/270 (42%), Gaps = 36/270 (13%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIR 59
+ G++++ G DP+ ++ G+ V L L G+ +++P YP ++ R
Sbjct: 71 IVGWLARRRG-VTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGAR 129
Query: 60 FRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETL 119
G ++ S+T L + I + +P+NP G ++ + L
Sbjct: 130 L-AGATVVRAD---------SLTELGP---------QRPALIWLNSPSNPTGRVLGVDHL 170
Query: 120 YELLDFAREKNIHVISDEIYGGSIFG-NEEFVSMAEILEAE--EVDKDRVHIIYGLSKDL 176
+++ +ARE+ V SDE Y G + E VS IL+ D + ++ LSK
Sbjct: 171 RKVVAWARERGAVVASDECYLE--LGWDAEPVS---ILDPRVCGGDHTGLLAVHSLSKQS 225
Query: 177 SLPGFRTGVIYSYNESV--LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234
+L G+R G + V L +K + AP Q +++ L D ++E E RR
Sbjct: 226 NLAGYRAGFVAGDPALVAELLEVRKHAGMM-VPAPVQAAMVAALGDDAHVREQRERYARR 284
Query: 235 IKKLYDSFVAGLKQLGIRCSESSAGLYCWA 264
L L+ G R S AGLY WA
Sbjct: 285 RAVL----RPALEAAGFRVDHSEAGLYLWA 310
|
Length = 364 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-11
Identities = 66/267 (24%), Positives = 115/267 (43%), Gaps = 25/267 (9%)
Query: 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
A +M +V G DP ++++ + G+ PA+ +L C + G+ L+ P YP ++
Sbjct: 91 ARYMEKVFG-VKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKY 149
Query: 61 RTG-VELIPVHCRSTDNFAFSITAL-DQAFNQARKRGVKVRGILICN-PANPVGNIIPRE 117
G V +P+ +NF + ++ +A+ +L N P NP G + +E
Sbjct: 150 YGGEVYNLPLL--EENNFLPDLDSIPKDIKEKAK--------LLYLNYPNNPTGAVATKE 199
Query: 118 TLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLS 177
E++DFA+E NI V+ D Y F + +S + A+EV + I+ LSK +
Sbjct: 200 FYEEVVDFAKENNIIVVQDAAYAALTFD-GKPLSFLSVPGAKEVGVE----IHSLSKAYN 254
Query: 178 LPGFRTGVIYSYNESVLA-AAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236
+ G+R + V A A K Q+ I L + ++ E RR+
Sbjct: 255 MTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLD 314
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLYCW 263
KL V L ++G + Y +
Sbjct: 315 KL----VKILNEVGFKAEMPGGTFYLY 337
|
Length = 410 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 8e-11
Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 22/254 (8%)
Query: 16 DP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74
DP ++ +T+G T A+ L + G+ +++ +P+Y ++ + G ++ V R
Sbjct: 113 DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM-AGAKIKTVTLRPP 171
Query: 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134
D FA L AF K R ILI P NP G + RE L + +E ++
Sbjct: 172 D-FAVPEDELKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAF 224
Query: 135 SDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYS---YNE 191
+DE+Y F + +SMA + E R + L K SL G++ G +
Sbjct: 225 TDEVYDKLAF-EGDHISMASLPGMYE----RTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 279
Query: 192 SVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGI 251
V A LT + + P Q ++ L + + Y E KR D V GLK++G
Sbjct: 280 GVRQAHSFLT--FATATPMQWAAVAAL---RAPESYYEELKRDYSAKKDILVEGLKEVGF 334
Query: 252 RCSESSAGLYCWAD 265
+ SS + D
Sbjct: 335 KVYPSSGTYFVMVD 348
|
Length = 413 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 2e-10
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 28/229 (12%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A ++S L +S P + LT G A EI+ LA +L+P P +P + F
Sbjct: 83 IADYLSNDLPYQLS--PDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIF 140
Query: 61 RT----GVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPR 116
+L+P D A A + ++I NP NP G++
Sbjct: 141 HHLEIRHFDLLPEKGWEVDLDAVEAIADENTI-----------AMVIINPGNPCGSVYSY 189
Query: 117 ETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDL 176
E L ++ + AR+ I VI+DE+YG +FG++ FV M L A V V + +SK
Sbjct: 190 EHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMG--LFASIVP---VITLGSISKRW 244
Query: 177 SLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQ 225
+PG+ G + + + S L + C I+ ++ L FIQ
Sbjct: 245 MIPGWGLGWLVTCDPS------GLLQICEIADSIKKALNPAPFPPTFIQ 287
|
Length = 409 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 48/258 (18%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD 75
+ ++ GA A+ +L LA +LV +P Y + R R G E++ +
Sbjct: 63 PAASVLPVNGAQEAIYLLPRLLA--PGRVLVLAPTYSEYARAWR-AAGHEVVEL-----P 114
Query: 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVIS 135
+ AL++A +++CNP NP G +IP ETL L R + ++
Sbjct: 115 DLDRLPAALEEA-----------DLLVVCNPNNPTGRLIPPETLLALAARLRARGGWLVV 163
Query: 136 DEIYGGSIFGNEEFVSMAEIL-EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVL 194
DE + +F A + +A + ++ L+K L G R G V+
Sbjct: 164 DEAF-------IDFTPDASLAPQAARF--PGLVVLRSLTKFFGLAGLRLGF-------VV 207
Query: 195 AAAKKLTRF------CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248
A + R +++ P + L+DT + + R+ A L +
Sbjct: 208 AHPALIARLREALGPWTVNGPALAAGRAALADTAWQAA----TRARLAAERARLAALLAR 263
Query: 249 LG-IRCSESSAGLYCWAD 265
LG +R +A L+
Sbjct: 264 LGGLRVVGGTA-LFLLVR 280
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 9e-10
Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 25/233 (10%)
Query: 15 FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYP---GFDRDIRFRTGVELIPVHC 71
D + ++TAGAT ++ ++ G+ + P P Y F RF V +P++
Sbjct: 81 LDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFAS--RFGAEVIEVPIY- 137
Query: 72 RSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
N+ + + + ++ R I + +P NP+G+ E + E + AR+ +
Sbjct: 138 SEECNYKLTPELVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDA 191
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
++ D Y F E + A E + Y SK + G R G + + +
Sbjct: 192 FLLHDCTYRD--FAREHTL-------AAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPD 242
Query: 192 SVLAAAKKLTRFCSISAPTQRLLISML-SDTKFIQEYLET---NKRRIKKLYD 240
+ + + Q I+ L ++I T N++ IK+ D
Sbjct: 243 LIEVVKSIVINDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVD 295
|
Length = 380 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Query: 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156
+ + + +C+P NP G ++ +TL +L++ A + + SDE Y F +E A +L
Sbjct: 165 RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYF--DEGNPPAGLL 222
Query: 157 EAE----EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--------C 204
+A D R + + LSK +LPG R+G V A+ L F C
Sbjct: 223 QAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGF-------VAGDAEILKAFLRYRTYHGC 275
Query: 205 SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWA 264
++ PTQ I+ +D ++++ N+ ++ + + + L Q+ + AG Y W
Sbjct: 276 AMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQV-LDLELPDAGFYLWP 330
Query: 265 DMSG 268
+ G
Sbjct: 331 KVPG 334
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 8e-09
Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 29/230 (12%)
Query: 15 FDPSQIVLTA-GATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73
I++ G ++ L D G+ +++P+P + ++ + PV+ +
Sbjct: 84 VPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGA---KPVYAKR 140
Query: 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHV 133
++F+ + ++ A + K + I +C P NP GN+IP E++I
Sbjct: 141 EEDFSLDVDSVLNAITE------KTKVIFLCTPNNPTGNLIP------------EEDIRK 182
Query: 134 ISDEIYGGSIFGNEEFVSMAEILEAEEVDK-DRVHIIYGLSKDLSLPGFRTG--VIYSYN 190
I + +F +E +V AE + D + I SK L G R G + +
Sbjct: 183 ILEST-DALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWL 241
Query: 191 ESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
AK T F S++ +Q I+ LSD ++I++ +E + + LY+
Sbjct: 242 IDYYMRAK--TPF-SLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYN 288
|
Length = 361 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 31/198 (15%)
Query: 11 QAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTG-----V 64
Q + DP +++++T+GAT A+ L + G+ +++ P Y + IR R G V
Sbjct: 80 QGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIR-RAGGVPRLV 138
Query: 65 ELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLD 124
L P H + AL AF+ + + +L+ NP NP G + PRE L L +
Sbjct: 139 RLEPPH------WRLPRAALAAAFSP------RTKAVLLNNPLNPAGKVFPREELALLAE 186
Query: 125 FAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTG 184
F + + I DE++ +F + + + ++R I K SL G++ G
Sbjct: 187 FCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGM----RERTVKIGSAGKIFSLTGWKVG 242
Query: 185 VIYSYNESVLAAAKKLTR 202
+ AA L R
Sbjct: 243 --------FVCAAPPLLR 252
|
Length = 387 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 53/245 (21%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRT-----GVELIPVH 70
D Q++ AG ++++ L + G ++ P + ++R G E+ V
Sbjct: 80 DEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFS------QYRHNAIIEGAEVREVP 133
Query: 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
+ + + A+ +A ++ + + + ICNP NP G + E L L+ +
Sbjct: 134 LK---DGGHDLEAMLKAIDE------QTKIVWICNPNNPTGTYVNHEELLSFLESVPS-H 183
Query: 131 IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY---------GLSKDLSLPGF 181
+ V+ DE Y E+V+ AE+ D + ++ SK L
Sbjct: 184 VLVVLDEAY-------YEYVT------AEDY-PDTLPLLEKYENLIVLRTFSKAYGLAAL 229
Query: 182 RTGVIYSYNESVLAAAKKLTR----FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237
R G + E +KL F + + Q I+ L D F++E +E N +++
Sbjct: 230 RVGYGIASEE----LIEKLNIARPPF-NTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQ 284
Query: 238 LYDSF 242
Y
Sbjct: 285 YYAFC 289
|
Length = 359 |
| >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 5e-08
Identities = 62/263 (23%), Positives = 99/263 (37%), Gaps = 70/263 (26%)
Query: 101 ILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-------SMA 153
I +C P NP G ++ +E L +D+A+E ++ D Y E F+ S+
Sbjct: 180 IYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAY-------EAFISDPSLPHSIY 232
Query: 154 EILEAEEVDKDRVHI-IYGLSKDLSLPGFRTGVIYSYN---ESVLAAAKK---------- 199
EI A E I SK GF TG +Y + +
Sbjct: 233 EIEGAREC-----AIEFRSFSKTA---GF-TGTRCAYTVVPKELKGKTSDGEGVSLNSLW 283
Query: 200 ----LTRFCSISAPTQRLLISMLSDT------KFIQEYLETNKRRIKKLYDSFVAGLKQL 249
T+F +S QR ++ S + I Y+E N + I++ GL+
Sbjct: 284 NRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYME-NAKIIRE-------GLESA 335
Query: 250 GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS---ACHCIEPGW 306
G Y W + S+ + +DKLL A + TPGS G+
Sbjct: 336 GFEVYGGVNAPYIWVKTPDGMSSW------DFFDKLLQEANVVGTPGSGFGPSG---EGY 386
Query: 307 FRCCFTSL-THEDIPLVIERIQK 328
FR ++ + E++ +ERI+K
Sbjct: 387 FR--LSAFGSRENVLEAMERIKK 407
|
Length = 409 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD 75
P I+ T GAT A ++ + L + G+ ++ P Y DI G E+ + +
Sbjct: 79 KPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQL-YDIPESLGAEVDYWQLKEEN 137
Query: 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVIS 135
+ + L + + I I N NP G ++ R L E+++ AR + +V+S
Sbjct: 138 GWLPDLDELRRLVRP------NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLS 191
Query: 136 DEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYG-LSKDLSLPGFRTGVIYSYNESVL 194
DE+Y + + S+A++ E I +SK SLPG R G I
Sbjct: 192 DEVYRP-LDEDGSTPSIADLYEK--------GISTNSMSKTYSLPGIRVGWI-------- 234
Query: 195 AAAKKLTRFCSI 206
AA +++
Sbjct: 235 AANEEVIDILRK 246
|
Length = 373 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-08
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 25/199 (12%)
Query: 106 PANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR 165
P NP + + L+ A+++ ++ISD Y F + S+ E+ A++V +
Sbjct: 184 PHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVES 243
Query: 166 VHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR------FCSIS-APTQRLLISML 218
Y LSK ++ G+R G + N+ ++ A KK+ F I A T I++
Sbjct: 244 ----YTLSKSYNMAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAAT----IALD 294
Query: 219 SDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP-SYSEKG 277
D ++E ET ++R L +SF G + A ++ WA IP G
Sbjct: 295 GDQSCVEEIRETYRKRRDVLIESF----ANAGWELQKPRASMFVWAK----IPEPARHLG 346
Query: 278 ELELWDKLLNIAKINVTPG 296
LE +LL AK+ V+PG
Sbjct: 347 SLEFSKQLLTEAKVAVSPG 365
|
Length = 403 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 7e-07
Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 21/167 (12%)
Query: 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156
+ R + I NP NP G +P E + L ++ V+ DE Y E+V +
Sbjct: 154 RTRLVFIANPNNPTGTYLPAEEVERFLA-GVPPDVLVVLDEAYA-------EYVRRKDYE 205
Query: 157 EAEEVDKDRVHIIY--GLSKDLSLPGFRTGVIYSY-NESVLAAAKKLTR--FCSISAPTQ 211
+ E+ +++ SK L G R G Y ++ A ++ R F ++++
Sbjct: 206 DGLELVAKFPNVVVTRTFSKAYGLAGLRVG--YGIAPPEIIDALNRV-RQPF-NVNSLAL 261
Query: 212 RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSA 258
++ L D F+++ N + L L +LG+ S
Sbjct: 262 AAAVAALDDDAFVEKSRALNAEGMAWL----TEFLAELGLEYIPSVG 304
|
Length = 367 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 29/172 (16%)
Query: 20 IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79
IV+TAG T A+ ++ LA +++P Y ++R RF +I D
Sbjct: 57 IVITAGITEALYLIGI-LALRDRKVIIPRHTYGEYERVARF-FAARIIK---GPND---P 108
Query: 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIY 139
+ V + CNP NP G + L LLD ++N +I D
Sbjct: 109 EKLE-----ELVERNSV----VFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILD--- 156
Query: 140 GGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
E F+ + + E + + + + +K LPG R G + + E
Sbjct: 157 -------EAFIDFVK--KPESPEGENIIKLRTFTKSYGLPGIRVGYVKGFEE 199
|
Length = 311 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 16 DPSQIVLTAGATPAVEIL--CFCLADHGNALLVPSPYYPGFDRDIR-FRTGVELIPVHCR 72
P QI+ + GA A+E+L FC +++ P Y + F GV+ +P+
Sbjct: 76 APEQILTSRGADEAIELLIRAFCEPGQ-DSIACFGPTYGMYAISAETFNVGVKALPL--- 131
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
T ++ + ++Q G K+ + ICNP NP G +I R + +L++ +
Sbjct: 132 -TADYQLPLDYIEQL------DGAKL--VFICNPNNPTGTVIDRADIEQLIE--MTPDAI 180
Query: 133 VISDEIYGGSIFGNEEF---VSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTG 184
V+ DE Y I EF S+A++L + ++ LSK +L G R G
Sbjct: 181 VVVDEAY---I----EFCPEYSVADLLA----SYPNLVVLRTLSKAFALAGARCG 224
|
Length = 354 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 8e-06
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 35/157 (22%)
Query: 1 MAGFMSQVLGQAVS----------FDP-SQIVLTAGATPAVEILC--FCLADHGNALLVP 47
M G L +A++ +D S+I +TAGAT A + L G+ ++V
Sbjct: 66 MTGV--AALREAIAAKTARLYGRQYDADSEITVTAGATEA--LFAAILALVRPGDEVIVF 121
Query: 48 SPYYPGFDRDIRFRTG----VELIPVHCRST-DNFAFSITALDQAFNQARKRGVKVRGIL 102
P Y + I G V L P R FA +I+ + R I+
Sbjct: 122 DPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISP-------------RTRLII 168
Query: 103 ICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIY 139
+ P NP G + + L +I+V+SDE+Y
Sbjct: 169 LNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVY 205
|
Length = 386 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 22/192 (11%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEIL----CFCLADHGNALLV-PSPYYPGFD 55
GF + + ++++ T G E+L F L D N + P+P+Y ++
Sbjct: 69 QRGFFKRRFK--IELKENELIPTFGTR---EVLFNFPQFVLFDKQNPTIAYPNPFYQIYE 123
Query: 56 RDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIP 115
+ +++ + ++F S+ K +V +++ +P NP G +
Sbjct: 124 GAAIA-SRAKVLLMPLTKENDFTPSLN---------EKELQEVDLVILNSPNNPTGRTLS 173
Query: 116 RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI-LEAEEVDKDRVHIIYGLSK 174
E L E + A + + +I+DE Y I+ N S+ E + V +I +SK
Sbjct: 174 LEELIEWVKLALKHDFILINDECY-SEIYENTPPPSLLEASILVGNESFKNVLVINSISK 232
Query: 175 DLSLPGFRTGVI 186
S PG R+G I
Sbjct: 233 RSSAPGLRSGFI 244
|
Length = 374 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 26/245 (10%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
A + Q + + Q++ +G ++I+ + G+ ++ +P + R
Sbjct: 66 ATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQY----RHH 121
Query: 62 TGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYE 121
+E V + +N + + + + K + ICNP NP G + L +
Sbjct: 122 AIIEGCEVKEVALNNGVYDLDEISSVVDNDTKI------VWICNPNNPTGTYVNDRKLTQ 175
Query: 122 LLDFAREKNIHVISDEIYGGSIFGNEEFVS---MAEILEAEEVDKDRVHIIYGLSKDLSL 178
++ E + VI + Y E+V+ E L E K+ + ++ SK L
Sbjct: 176 FIEGISENTLIVIDEAYY--------EYVTAKDFPETLPLLEKHKN-ILVLRTFSKAYGL 226
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRF-CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237
FR G Y+ L + R ++S+ Q+ D +FI+E + N +++
Sbjct: 227 ASFRVG--YAVGHEELIEKLNVVRLPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQ 284
Query: 238 LYDSF 242
Y+SF
Sbjct: 285 -YESF 288
|
Length = 366 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 20/216 (9%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTG-VELIPVHCRST 74
P Q+ L G A++ L + D G+ +LVP P + + R+ G V PV
Sbjct: 81 SPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPV--SKA 138
Query: 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134
D+F + + A++ R + + +P NP G+ IP + + L + E+ + V+
Sbjct: 139 DDFEQTADTVLDAYDGERI-------VYLTSPHNPTGSEIPLDEVEALAERTDEETLVVV 191
Query: 135 SDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVL 194
DE YG F S ++E ++D V ++ SK L G R G E
Sbjct: 192 -DEAYGE--FAERP--SAVALVE----ERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWAD 242
Query: 195 AAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLET 230
A A+ T F + S R ++ L D + ++ +ET
Sbjct: 243 AYARVNTPF-AASELACRAGLAALDDDEHVERTVET 277
|
Length = 357 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 101 ILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160
I + P NP GN++ E L +L AR+ NI ++ D Y G F F +
Sbjct: 183 ICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAY-GPPFPGIIFSEATPLWNP-- 239
Query: 161 VDKDRVHIIYG--LSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSI 206
+II LSK L LPG R G++ + +E ++ A L+ I
Sbjct: 240 ------NIILCMSLSK-LGLPGVRCGIVIA-DEEIIEA---LSNMNGI 276
|
Length = 416 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 13/194 (6%)
Query: 106 PANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR 165
P NP I P E + F ++ ++ ++ D Y +F + V IL+A D ++
Sbjct: 174 PHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVF--DGEVEPPSILQA---DPEK 228
Query: 166 VHII--YGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKF 223
I + LSK ++ GFR G ++ + L A + + + +L ++
Sbjct: 229 SVSIEFFTLSKSYNMGGFRIG--FAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTG 286
Query: 224 IQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWD 283
Q ++ + ++ D+F+ L Q+G A +Y WA +P + +E
Sbjct: 287 PQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAK----LPEPWQGNSVEFCT 342
Query: 284 KLLNIAKINVTPGS 297
+L+ + +PGS
Sbjct: 343 QLVAQTGVAASPGS 356
|
Length = 388 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 101 ILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYG----GSIFGNEEFVSMAEIL 156
I + P NP GN++ E L +L AR+ I +I D YG G IF
Sbjct: 183 ICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFS----------- 231
Query: 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAA 196
+A + + + + LSK L LPG R G+I + NE V+ A
Sbjct: 232 DATPLWNENIILCMSLSK-LGLPGSRCGIIIA-NEKVIQA 269
|
Length = 417 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV--SMAE 154
+ IC+P NP GN+ P E + ++L+ + V+ DE Y EF S+
Sbjct: 140 NASAVFICSPNNPTGNLQPEEEILKVLETGKP----VVLDEAYA-------EFSGKSLIG 188
Query: 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLL 214
+++ + + ++ SK L G R G + NE ++ A ++ S++ T +++
Sbjct: 189 LID----EYPNLILLRTFSKAFGLAGIRAGYAIA-NEEIIDALYRIKPPFSLNILTMKIV 243
Query: 215 ISMLSDTKFIQEYLETNKRRIKKLYDSF 242
L I+E ++ + +++
Sbjct: 244 RLALDHYDLIEERIDYIIKERERVRREL 271
|
Length = 337 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156
+ R I++ P NP + L L R +I ++SDE+Y +F SMA
Sbjct: 162 RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHR 221
Query: 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISA--PTQRLL 214
E E R I+ K + G+R G + E ++ +K+ +F SA P Q
Sbjct: 222 ELAE----RSVIVSSFGKSYHVTGWRVGYCLAPAE-LMDEIRKVHQFMVFSADTPMQHAF 276
Query: 215 ISMLSDTKFIQEYLE 229
L++ YL
Sbjct: 277 AEALAEP---ASYLG 288
|
Length = 384 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156
+ R I +CNP NP G ++ L LD A ++ V+ DE Y E+V ++
Sbjct: 145 RTRLIFVCNPNNPTGTVVTPAELARFLD-AVPADVLVVLDEAYV-------EYVRDDDVP 196
Query: 157 EAEEVDKDR--VHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK 199
+ E+ +D V ++ SK L G R G + V+AA +K
Sbjct: 197 DGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVG-HPEVIAALRK 240
|
Length = 352 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 18/171 (10%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD 75
D ++ T G++ A+ ++ L G+ ++V P Y + TG E+ P +
Sbjct: 68 DAHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYHSLS-HLAVATGCEVRPWPLLAVR 126
Query: 76 NFAFSITALDQAFNQARKRGVKVRGILICN-PANPVGNIIPRETLYELLDFAREKNIHVI 134
F + AL +A R R V + N P NP G + L ELL+ A ++
Sbjct: 127 GFRPDLDAL-RALLTPRTRAV------VVNFPHNPTGASVTPRELDELLERAARSGAVLL 179
Query: 135 SDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYG-LSKDLSLPGFRTG 184
D + + V A L DRV I +G LSK LPG R G
Sbjct: 180 WDNAFA-------DLVHDAPPLPDPSALYDRV-ISFGTLSKAFGLPGLRVG 222
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 33/210 (15%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGN---ALLVPSPYYPGFD--RDIRFR 61
Q L + S I+ G T F + A++V PGF R +
Sbjct: 62 QALARHHQVPASWILAGNGETE----SIFAVVSGLKPRRAMIV----TPGFAEYRRALQQ 113
Query: 62 TGVELIPVHCRSTDNFAFS---ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET 118
G E+ R D + + + AL + + +C P NP G + R+
Sbjct: 114 VGCEIRRYSLREADGWQLTDAILEALTPDLD----------CLFLCTPNNPTGLLPERQL 163
Query: 119 LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSL 178
L + + + NI +I DE + I F+ D + ++ L+K ++
Sbjct: 164 LQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLA-------DNPHLWVLRSLTKFYAI 216
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRFCSISA 208
PG R G + + +++ +A ++ SI+A
Sbjct: 217 PGLRLGYLVNSDDAAVARMRRQQMPWSINA 246
|
Length = 356 |
| >gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 40/165 (24%), Positives = 62/165 (37%), Gaps = 27/165 (16%)
Query: 101 ILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160
++I NP NP + P E L L R I V+ DE + ++ G E S+A
Sbjct: 143 VVIGNPTNPTSVLHPAEQLLAL---RRPGRILVV-DEAFADAVPGEPE--SLAG------ 190
Query: 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC------SISAPTQRLL 214
D V ++ L+K SL G R G Y L A L R + +
Sbjct: 191 DDLPGVLVLRSLTKTWSLAGLRVG----Y---ALGAPDVLARLTRGRAHWPVGTLQLEAI 243
Query: 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAG 259
+ + + + R+ VAGL+ +G R + +A
Sbjct: 244 AACCAPRAVAE--AAADAARLAADRAEMVAGLRAVGARVVDPAAA 286
|
Length = 349 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 50/241 (20%), Positives = 110/241 (45%), Gaps = 24/241 (9%)
Query: 9 LGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIP 68
L + S P+ I + G+ + ++ + G+ ++ P P + + + VE IP
Sbjct: 68 LARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVE-IP 126
Query: 69 VHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE 128
V + + +F + ++ + + + +CNP NP G++I RE + ++++ +R
Sbjct: 127 VKLKEDYTYDV------GSFIKVIEK-YQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRG 179
Query: 129 KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYS 188
V+ DE Y +GN ++ +++ E + ++ LSK L G R G +
Sbjct: 180 I---VVVDEAY-FEFYGN----TIVDVINEFE----NLIVLRTLSKAFGLAGLRVGYAVA 227
Query: 189 YNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD--SFVAGL 246
NE++L + +I++ +Q + + +L T ++E + ++L S + G+
Sbjct: 228 -NENILKYLNLVKSPYNINSLSQVIALKVL-RTGVLKERVNYILNERERLIKELSKIPGI 285
Query: 247 K 247
K
Sbjct: 286 K 286
|
Length = 351 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 61/271 (22%), Positives = 101/271 (37%), Gaps = 55/271 (20%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVE--ILCFCLADHGNALLVPSPYYPGFDRDI 58
+ + G ++ AG++ + +L F G L+ P Y +
Sbjct: 83 LRTLFAAQEGLPADH----VMAYAGSSEPLNYAVLAFTSPTAG--LVTADPTY-----EA 131
Query: 59 RFRT----GVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII 114
+R G + V R + A + A+ A A G+ I ICNP NP G +
Sbjct: 132 GWRAADAQGAPVAKVPLR--ADGAHDVKAMLAADPNA---GL----IYICNPNNPTGTVT 182
Query: 115 PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174
PR + LL + ++ DE Y I F +++ KD + ++ SK
Sbjct: 183 PRADIEWLLA-NKPAGSVLLVDEAY---I----HFSDAPSVVDLVAQRKDLI-VLRTFSK 233
Query: 175 DLSLPGFRTGVIYSYNESVLAAA-----KKLTRF--CSISAPTQRLLISMLSDTKFIQEY 227
+ G R G LAAA KL RF + P ++ L D K + +
Sbjct: 234 LYGMAGMRLG---------LAAARPDLLAKLARFGHNPLPVPAAAAGLASLRDPKLVPQ- 283
Query: 228 LETNKRRIKKLYDSFVAGLKQLGIRCSESSA 258
+ + + +A LK+ G +C+ S A
Sbjct: 284 ---RRAENAAVREDTIAWLKKKGYKCTPSQA 311
|
Length = 370 |
| >gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 29/167 (17%)
Query: 100 GILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEA 158
GI+ NP P G +P + +L A + V+ DE Y + FG E + +
Sbjct: 147 GIIFPNPNAPTGIALPLAEIERIL--AANPDSVVVIDEAY---VDFGGESAIPL------ 195
Query: 159 EEVDK-DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR----FCS--ISAPTQ 211
+D+ + ++ SK SL G R G ++ L A L R F S + Q
Sbjct: 196 --IDRYPNLLVVQTFSKSRSLAGLRVG--FAIGHPELIEA--LNRVKNSFNSYPLDRLAQ 249
Query: 212 RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSA 258
I+ + D + Y E + ++ + V L+ LG S A
Sbjct: 250 AGAIAAIED----EAYFEETRAKVIATRERLVEELEALGFEVLPSKA 292
|
Length = 353 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 36/218 (16%)
Query: 103 ICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162
+C+P NP G ++P + +L + + SDE Y I+ +E + + A E+
Sbjct: 172 VCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECY-SEIYFDEAAPPLGLLEAAAELG 230
Query: 163 KD---RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--------CSISAPTQ 211
+D R+ + + LSK ++PG R+G V A L +F C++ Q
Sbjct: 231 RDDFKRLVVFHSLSKRSNVPGLRSGF-------VAGDAALLKKFLLYRTYHGCAMPPAVQ 283
Query: 212 RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP 271
I+ +D ++E N+ ++ +D+ L + + AG Y WA + G
Sbjct: 284 AASIAAWNDEAHVRE----NRALYREKFDAVTPILAPV-LDVQLPDAGFYLWAKVPG--- 335
Query: 272 SYSEKGELELWDKLLNIAKINVTPGS----ACHCIEPG 305
+ E +L + V PGS H + PG
Sbjct: 336 -----DDTEFARRLYADYNVTVLPGSYLAREAHGVNPG 368
|
Length = 396 |
| >gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 101 ILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-SMAEILEAE 159
I I +P NP+GN+I R++L + + R+K + DE + +FV + AE E
Sbjct: 126 IFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFI-------DFVPNRAE--EDV 176
Query: 160 EVDKDRVHIIYG--LSKDLSLPGFRTGVI 186
+++ ++I G L+K L +P R G I
Sbjct: 177 LLNRSYGNVIIGRSLTKILGIPSLRIGYI 205
|
Length = 332 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 99 RGILICNPANPVGNIIPRETLYELLD-FAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157
G+L+ NP NP G + RE + LL+ FA V+ DE + + + E S+ L
Sbjct: 150 DGLLLNNPHNPTGKLWSREAILPLLEQFAL-----VVVDEAFMDFLPPDAEQ-SLIPCLA 203
Query: 158 AEEVDKDRVHIIYGLSKDLSLPGFRTG 184
+ I+ L+K SLPG R G
Sbjct: 204 EYP----NLIILRSLTKFYSLPGLRLG 226
|
Length = 360 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 20/100 (20%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKN--IHVISDEIYGGSIFGNEEFVSMAE 154
++ + + NP+NP + E++ +++D + +++D++YG F + +F S+
Sbjct: 240 SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYG--TFVD-DFRSLFA 296
Query: 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVL 194
L + +Y SK G+R G I + +++
Sbjct: 297 ELPYNTI------GVYSFSKYFGATGWRLGTIALHKDNIF 330
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 6 SQVLGQAVSFD----PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYP--GFDRDIR 59
S+ L A++ D I++ GA +++L C+ D G+ ++ P + FD +
Sbjct: 88 SRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAV- 146
Query: 60 FRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETL 119
G E+I V R T +F+ + + +A K + + + +P NP G+II + L
Sbjct: 147 --NGAEVIKV-PR-TPDFSLDVPRIVEAVETH-----KPKLLFLTSPNNPDGSIISDDDL 197
Query: 120 YELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLP 179
++L+ I V+ DE Y EF S E D + ++ SK L
Sbjct: 198 LKILELP----ILVVLDEAY-------IEF-STQESRMKWVKKYDNLIVLRTFSKRAGLA 245
Query: 180 GFRTG 184
G R G
Sbjct: 246 GLRVG 250
|
Length = 380 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 334 | |||
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.98 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.97 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.97 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.97 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.97 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.97 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.97 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.97 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.97 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.97 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.97 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.97 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.97 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.96 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.96 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.96 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.96 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.96 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.96 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.96 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.96 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.96 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.96 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.96 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.96 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.96 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.96 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.96 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.96 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.96 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.96 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.96 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.95 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.95 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.95 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.95 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.95 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.95 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.95 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.95 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.95 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.94 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.94 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.94 | |
| PLN02651 | 364 | cysteine desulfurase | 99.94 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.94 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.94 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.94 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.94 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.93 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.93 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.93 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.93 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.93 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.93 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.93 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.93 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.93 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.93 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.93 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.93 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.93 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.93 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.92 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.92 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.92 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.92 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.92 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.92 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.92 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.92 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.92 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.92 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.92 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.92 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.92 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.92 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.91 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.91 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.91 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.91 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.91 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.91 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.91 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.91 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.91 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.91 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.91 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.9 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.9 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.9 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.9 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.9 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.9 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.9 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.9 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.89 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.89 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.89 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.89 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.89 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.89 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.89 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.89 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.89 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.89 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.88 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.88 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.88 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.88 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.87 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.87 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.87 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.87 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.87 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.87 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.87 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.86 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.86 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.86 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.86 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.86 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.86 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.86 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.86 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.86 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.86 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.85 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.85 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.85 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.85 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.85 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.85 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.85 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.85 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.85 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.84 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.84 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.84 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.84 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.84 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.83 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.83 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.83 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.83 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.82 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.82 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.82 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.82 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.81 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.81 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.81 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.8 | |
| PLN02263 | 470 | serine decarboxylase | 99.8 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.8 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.8 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.79 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.79 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.79 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.79 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.79 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.79 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.79 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.79 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.79 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.78 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.78 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.77 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.76 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.76 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.76 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.76 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.75 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.75 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.75 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.75 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.75 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.75 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.75 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.75 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.74 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.74 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.74 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.74 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.73 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.73 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.73 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.73 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.73 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.73 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.73 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.73 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.73 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.73 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.73 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.73 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.72 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.72 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.72 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.71 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.71 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.71 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.71 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.71 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.7 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.7 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.7 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.7 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.69 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.69 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.69 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.68 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.67 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.67 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.67 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.64 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.64 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.62 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.62 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.62 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.61 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.61 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.61 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.59 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.58 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.57 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.56 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.56 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.52 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.5 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.46 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 99.43 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.42 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.41 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.38 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.37 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.31 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.29 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.2 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.19 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.18 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.12 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.06 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.01 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 98.98 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.91 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.88 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.67 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.57 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 98.57 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.54 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.49 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.28 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 98.24 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.03 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 95.85 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 92.8 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 91.13 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 85.52 | |
| PF03652 | 135 | UPF0081: Uncharacterised protein family (UPF0081); | 82.58 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 82.52 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 81.95 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 81.92 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 80.88 | |
| COG2870 | 467 | RfaE ADP-heptose synthase, bifunctional sugar kina | 80.79 |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=378.20 Aligned_cols=312 Identities=27% Similarity=0.489 Sum_probs=278.4
Q ss_pred ChhhhhhhhcCCCCCCCCc-EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCC-CCcc
Q 019899 1 MAGFMSQVLGQAVSFDPSQ-IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST-DNFA 78 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~-i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~ 78 (334)
||+++.++.+ +.+++++ |++|+|+++|+..++.+++++||+|++++|.|++|..... ..|.+++.+++..+ ++|.
T Consensus 74 ia~~~~~~~~--~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~-~~gg~~v~v~l~~~~~~f~ 150 (393)
T COG0436 74 IAEKYKRRYG--LDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVK-LAGGKPVPVPLDEEENGFK 150 (393)
T ss_pred HHHHHHHHhC--CCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHH-hcCCEEEEEeCCcCccCCc
Confidence 4788888777 7788876 9999999999999999999999999999999999999999 99999999998544 5999
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|++.+++++++ ++|++++++||||||.+++.+++++|.++|++|+++||.||+|..+.|++..+.++.++.+.
T Consensus 151 ~d~~~l~~~i~~------ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~ 224 (393)
T COG0436 151 PDLEDLEAAITP------KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGA 224 (393)
T ss_pred CCHHHHHhhcCc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCC
Confidence 999999999997 89999999999999999999999999999999999999999999999988666777766541
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
.++++.+.||||+++++|+|+||++++++++++.+.+.... .+.+.+.|.++..+++..+. .+..+.+++.++
T Consensus 225 ----~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~ 299 (393)
T COG0436 225 ----RDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYR 299 (393)
T ss_pred ----cceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHH
Confidence 47899999999999999999999999558898888865444 47889999999999987643 345667778999
Q ss_pred HHHHHHHHHHHhC-CCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC
Q 019899 237 KLYDSFVAGLKQL-GIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS 313 (334)
Q Consensus 237 ~~~~~~~~~l~~~-g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~ 313 (334)
++++.+.+.|.+. |+.+.. |+++||+|++++.. .++.+++.+|+++.||.+.||..||.. ..+++|++++
T Consensus 300 ~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~- 372 (393)
T COG0436 300 ERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLA- 372 (393)
T ss_pred HHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC------CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEe-
Confidence 9999999999988 599887 88999999999986 356899999999999999999999985 7799999999
Q ss_pred CCcccHHHHHHHHHHHHHHc
Q 019899 314 LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+++.++++++++.++++++
T Consensus 373 ~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 373 TSEETLEEALRRLARFLAEY 392 (393)
T ss_pred cCHHHHHHHHHHHHHHHHhc
Confidence 65699999999999998875
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=352.69 Aligned_cols=331 Identities=53% Similarity=0.993 Sum_probs=314.4
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+|+|+.+..+.....+|+++++++|+|.++.+++.+|.+|||..++|.|.|+++.+-+++..|.++++|.+..+++++++
T Consensus 130 ~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~f~it 209 (471)
T KOG0256|consen 130 VAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNGFQIT 209 (471)
T ss_pred HHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCceEEEEEeecCCCcccc
Confidence 47888888888899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++|.+++++++.+.+++.++++||+||-|.+++.+++..+++++.++++.||+||+|+..+|+...+.++.++...++
T Consensus 210 v~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~ 289 (471)
T KOG0256|consen 210 VEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPH 289 (471)
T ss_pred HHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999988766
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
++.+++-++.|+||-+|+||+|+|.|...++.+.....++..++..|+..|..++.+|.+.++.+.++.+.+.+++.+..
T Consensus 290 ~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~ 369 (471)
T KOG0256|consen 290 LDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHR 369 (471)
T ss_pred cCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHH
Q 019899 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIP 320 (334)
Q Consensus 241 ~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~ 320 (334)
++.+.|+++|+.+....+|+|+|+++.+.....+.+...++..+++.+-++.+.||+.|.+.+++|+|+|+++..++.++
T Consensus 370 ~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~ 449 (471)
T KOG0256|consen 370 YIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLE 449 (471)
T ss_pred HHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHH
Confidence 99999999999999999999999999999888777777889999899779999999999999999999999977777777
Q ss_pred HHHHHHHHHHH
Q 019899 321 LVIERIQKVAE 331 (334)
Q Consensus 321 ~~l~~l~~~~~ 331 (334)
.++++++.++.
T Consensus 450 ~am~Ri~~~~~ 460 (471)
T KOG0256|consen 450 VAMRRLKQFLD 460 (471)
T ss_pred HHHHHHHHHHH
Confidence 79999999875
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=379.14 Aligned_cols=334 Identities=51% Similarity=0.997 Sum_probs=288.3
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+|+|+.+.++...++++++|++|+|+++++..++.+++++||.|+++.|.|+.+...+....|.++++|+++.++++.+|
T Consensus 104 iA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~ 183 (447)
T PLN02607 104 MASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVT 183 (447)
T ss_pred HHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCC
Confidence 46777776664456899999999999999999999999999999999999999988776457999999998766778899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++.+++++++.++.+.++|++++++|+||||.++|.+++++++++|++|++++|+||+|+.+.|++..+.++.++....+
T Consensus 184 ~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~ 263 (447)
T PLN02607 184 PQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARG 263 (447)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcC
Confidence 99999999988777889999999999999999999999999999999999999999999999887666777766543211
Q ss_pred -cC-CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 -VD-KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 -~~-~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+ .++++++.|+||.+|++|+|+||+++.++.+++.++....+...|+++|.++..++.+.++.+.++.+.+++++++
T Consensus 264 ~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~ 343 (447)
T PLN02607 264 YKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKR 343 (447)
T ss_pred CCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 11 5789999999999999999999999877888888877666656789999999999998887778888999999999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++.+.+.|++.|+++..+.+|+|+|+++++...........++..++++++||.+.||..|+...++|+|++++..++++
T Consensus 344 ~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~ 423 (447)
T PLN02607 344 YEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDT 423 (447)
T ss_pred HHHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHH
Confidence 99999999999999889999999999998654322223345778888888999999999998877899999999658999
Q ss_pred HHHHHHHHHHHHHHcC
Q 019899 319 IPLVIERIQKVAETCK 334 (334)
Q Consensus 319 l~~~l~~l~~~~~~~~ 334 (334)
+++++++|.+++++++
T Consensus 424 l~~gl~Ri~~~l~~~~ 439 (447)
T PLN02607 424 LEVALKRIHRFMDRRK 439 (447)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997753
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=378.85 Aligned_cols=333 Identities=44% Similarity=0.878 Sum_probs=284.2
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.+.++..+.+++++|++|+|+++++..++.+++++||.|++++|+|+.+...+....|++++.+++..+++++++
T Consensus 103 iA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~ 182 (496)
T PLN02376 103 IAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLT 182 (496)
T ss_pred HHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCC
Confidence 46777776665566899999999999999999999999999999999999999998776348999999999766778999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++.++++++.....+.+++++++++|+||||.++|.+++++|+++|++++++||+||+|+.+.|.+..+.++.++..+.+
T Consensus 183 ~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~ 262 (496)
T PLN02376 183 VDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVD 262 (496)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhcccc
Confidence 99999887655444457899999999999999999999999999999999999999999999988766777777643211
Q ss_pred ---cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 ---VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ---~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.++++++.||||.+|++|+|+||++++++.+.+.++.....+..+++.|.++..++.+.++++.++.+.++++++
T Consensus 263 ~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~ 342 (496)
T PLN02376 263 ISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGI 342 (496)
T ss_pred ccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Confidence 11246778899999999999999999997788888777766666789999999999999888778888999999999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC-CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS-YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
+++.+.+.|++.|+++..+++|+|+|+++++.... ...+...++++.++++.||.+.||..|+...++|+|++++..++
T Consensus 343 r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~ 422 (496)
T PLN02376 343 RHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDD 422 (496)
T ss_pred HHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCH
Confidence 99999999999999988899999999999865432 22234467888888888999999999987678999999996678
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+.++.++++|++++.++
T Consensus 423 ~~l~~al~rl~~~l~~~ 439 (496)
T PLN02376 423 DTLHVALGRIQDFVSKN 439 (496)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998653
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=376.73 Aligned_cols=332 Identities=50% Similarity=0.970 Sum_probs=281.2
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.++++....+++++|++|+|+++++..++.+++++||.|++++|+|+.+...+....|.+++.+++..++++.+|
T Consensus 95 iA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~ 174 (468)
T PLN02450 95 LAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQIT 174 (468)
T ss_pred HHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCC
Confidence 46777776664455789999999999999999999999999999999999999988776348999999998766788899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc--
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA-- 158 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~-- 158 (334)
++.+++++++..+.+.+++++++++|+||||.++|.+++++|+++|++|+++||+||+|+.+.|.+..+.+..+...+
T Consensus 175 ~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~ 254 (468)
T PLN02450 175 ESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRK 254 (468)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcc
Confidence 999999998765566689999999999999999999999999999999999999999999988876555554444311
Q ss_pred -ccc-CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 159 -EEV-DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 159 -~~~-~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
.+. +.++++++.||||.+|++|+|+||++++++.+.+.+.+.......+.++|.++..++.+.++..+++.+++++++
T Consensus 255 ~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~ 334 (468)
T PLN02450 255 LENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLK 334 (468)
T ss_pred cccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 000 257899999999999999999999999666677777666555567999999999999987765667888899999
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
++++.+.+.|+++|+.+..+.+|+|+|+++++...........++...+++++||.+.||..|+...++++|++++..++
T Consensus 335 ~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~ 414 (468)
T PLN02450 335 QRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSE 414 (468)
T ss_pred HHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCH
Confidence 99999999999999988889999999999986544333334456888888889999999999987667899999996688
Q ss_pred ccHHHHHHHHHHHHHH
Q 019899 317 EDIPLVIERIQKVAET 332 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~ 332 (334)
+++++++++|++++++
T Consensus 415 ~~l~~~l~ri~~~l~~ 430 (468)
T PLN02450 415 ETLDLAMKRLKSFVES 430 (468)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998865
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-49 Score=354.61 Aligned_cols=304 Identities=22% Similarity=0.385 Sum_probs=264.2
Q ss_pred ChhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
||+|+.++.+ +.+++ ++|++|+|+++++..++.+++++||.|++++|+|+.+...++ ..|.+++.+|+++++++.+
T Consensus 78 ia~~~~~~~g--~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~ 154 (399)
T PRK07681 78 VTEYYNNTHN--VILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQ-MAGATSYYMPLKKENDFLP 154 (399)
T ss_pred HHHHHHHHhC--CCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHH-hcCCEEEEEecCCCCCCcC
Confidence 3566666555 67888 799999999999999999999999999999999999999998 9999999999976667889
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ +++++++++|+||||.+++.+++++|+++|++++++||+||+|+++.+++....++.++..
T Consensus 155 d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~-- 226 (399)
T PRK07681 155 DLELIPEEIAD------KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG-- 226 (399)
T ss_pred CHHHHHHhccc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCC--
Confidence 99999998865 7899999999999999999999999999999999999999999999887655556655543
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..+++++++||||.+|++|+|+||+++ ++++++.+..... .++.+.+.|.++..++.... +++.+.++.+++
T Consensus 227 --~~~~~i~~~S~SK~~~~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~ 300 (399)
T PRK07681 227 --AKEVGVEINSLSKSYSLAGSRIGYMIG-NEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGA---AFCEKNRGIYQE 300 (399)
T ss_pred --CcccEEEEeecccccCCccceeEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcH---HHHHHHHHHHHH
Confidence 146789999999999999999999998 8899998887653 46788899999999997742 456777888999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|++.|+++..+.+|+|+|++++... ++.++...+++++||.+.||..|+...++++|++++ .+++
T Consensus 301 ~~~~l~~~L~~~g~~~~~p~~g~f~~~~l~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~ 373 (399)
T PRK07681 301 RRDTLVDGFRTFGWNVDKPAGSMFVWAEIPKGW------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV-QDEE 373 (399)
T ss_pred HHHHHHHHHHHCCCcccCCCeeeEEEEECCCCC------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec-CCHH
Confidence 999999999999988878899999999998643 346888998887999999999987655689999998 6789
Q ss_pred cHHHHHHHHHH
Q 019899 318 DIPLVIERIQK 328 (334)
Q Consensus 318 ~l~~~l~~l~~ 328 (334)
++++++++|++
T Consensus 374 ~~~~~l~~l~~ 384 (399)
T PRK07681 374 VLQQAVENIRN 384 (399)
T ss_pred HHHHHHHHHHH
Confidence 99999999987
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=351.24 Aligned_cols=319 Identities=21% Similarity=0.345 Sum_probs=267.0
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+|+|+.+..+ +.++++ +|++|+|+++++..++.+++++||.|++++|+|+.+...++ ..|.+++.++++.++++.+
T Consensus 80 ia~~l~~~~~--~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~ 156 (403)
T PRK08636 80 ICNWYKRKYN--VDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFI-LAGGNVHKMPLEYNEDFEL 156 (403)
T ss_pred HHHHHHHHhC--CCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-hcCCEEEEEeccccccCcc
Confidence 4677776656 677887 79999999999999999999999999999999999999998 8999999999854566889
Q ss_pred cHHHHHHHHHHHHHc-CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 80 SITALDQAFNQARKR-GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~-~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
|++++.+.+++.-++ ..+++++++++|+||||.++|.+++++|+++|++|+++||+||+|+++.|++....++..+..
T Consensus 157 d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~- 235 (403)
T PRK08636 157 DEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEG- 235 (403)
T ss_pred ChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCC-
Confidence 998776665543322 347899999999999999999999999999999999999999999999887655556555532
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
..+.+++++||||.+|++|+|+||+++ ++++++.+.+... .++.+++.|.++..++... .+++.+.++.++
T Consensus 236 ---~~~~~i~~~S~SK~~~~~GlRiG~iv~-~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~ 308 (403)
T PRK08636 236 ---AKDVAVESYTLSKSYNMAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYR 308 (403)
T ss_pred ---ccccEEEEEecccccCCccceeeeeeC-CHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHH
Confidence 135778899999999999999999998 8889888877654 3566778888777666432 456788889999
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
++++.+.+.|++.++.+..+.+|+|+|+++|..... .++.+++..+++++||.+.||..|+...++++||+++ .++
T Consensus 309 ~~~~~l~~~L~~~~~~~~~p~~g~~~~~~l~~~~~~---~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~-~~~ 384 (403)
T PRK08636 309 KRRDVLIESFANAGWELQKPRASMFVWAKIPEPARH---LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI-ENE 384 (403)
T ss_pred HHHHHHHHHHHHCCCcccCCCcceEEEEECCCccCC---CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec-CCH
Confidence 999999999999888888899999999999864321 1346788888888999999999998666789999998 789
Q ss_pred ccHHHHHHHHHHHHHHcC
Q 019899 317 EDIPLVIERIQKVAETCK 334 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~~ 334 (334)
+++++++++|++++++|+
T Consensus 385 ~~l~~~~~rl~~~l~~~~ 402 (403)
T PRK08636 385 NRIRQAARNIKKFLKELE 402 (403)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999998864
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=325.77 Aligned_cols=314 Identities=23% Similarity=0.384 Sum_probs=283.0
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC-CCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR-STDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~~ 79 (334)
|++|.+++.. +.++++.|++++|...++..+++.+.++||.|++.+|.|+++....+ ..|.++++.|+. +++.|.+
T Consensus 69 i~~w~~~r~~--~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~-~n~R~~i~~pL~~~~~~y~i 145 (388)
T COG1168 69 IAHWFKQRHQ--WEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIK-LNGRKVIENPLVEDDGRYEI 145 (388)
T ss_pred HHHHHHHhcC--CCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHh-hcCcEEEeccccccCCcEEe
Confidence 4678888887 88899999999999999999999999999999999999999999999 999999999986 5677889
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|.++|++++.+. +++++++|||+||||.+++.++|.+|.++|.+||++||+||+|+++.+.|..+.++..+.+.
T Consensus 146 D~~~LE~~~~~~-----~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~- 219 (388)
T COG1168 146 DFDALEKAFVDE-----RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSER- 219 (388)
T ss_pred cHHHHHHHHhcC-----CccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChh-
Confidence 999999999983 78999999999999999999999999999999999999999999999999888888877662
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-hh--cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-LT--RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
. .++.+.+.|.||+|+++|+.+++++++++++++++.+ +. ...+.|.++..+...+++.+ ++|+.++.+.++
T Consensus 220 -~-a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G---~~WLd~L~~yl~ 294 (388)
T COG1168 220 -F-ADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG---EPWLDELLEYLK 294 (388)
T ss_pred -h-hcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---hHHHHHHHHHHH
Confidence 1 5888999999999999999999999999998776643 33 33567889999998888876 678899999999
Q ss_pred HHHHHHHHHHHhC--CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCC
Q 019899 237 KLYDSFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSL 314 (334)
Q Consensus 237 ~~~~~~~~~l~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~ 314 (334)
.+++++.+.+.+. ++++..|++.|.+|+++.+..- ++.++...++++.+|.+.+|..||..+.+++|++++ .
T Consensus 295 ~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l-----~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~a-c 368 (388)
T COG1168 295 DNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELGL-----DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFA-C 368 (388)
T ss_pred HHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccCC-----ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecC-C
Confidence 9999999999987 8999999999999999987643 346899999999999999999999998999999999 8
Q ss_pred CcccHHHHHHHHHHHHHHcC
Q 019899 315 THEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~~~ 334 (334)
+.+-+++++++|+.++++.+
T Consensus 369 pr~~L~eal~ri~~al~~~~ 388 (388)
T COG1168 369 PRAILEEALERLKRALKKRR 388 (388)
T ss_pred CHHHHHHHHHHHHHHHhccC
Confidence 89999999999999988653
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-48 Score=348.29 Aligned_cols=311 Identities=22% Similarity=0.369 Sum_probs=261.2
Q ss_pred ChhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC---CCCC
Q 019899 1 MAGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR---STDN 76 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~---~~~~ 76 (334)
|++|+.+.++ +.+++ ++|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.++++ .+++
T Consensus 87 ia~~l~~~~g--~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-~~g~~v~~v~~~~~~~~~~ 163 (405)
T PRK06207 87 LAARLAAFTG--APVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVE-FFEGEMVPVQLDYLSADKR 163 (405)
T ss_pred HHHHHHHHhC--CCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-HcCCEEEEEeccccCcccC
Confidence 3567776656 66787 899999999999999999999999999999999999999998 899999999974 2346
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
+.+|++++++++++ +++++++++|+||||.+++.+++++|+++|++++++||+||+|.++.|.+..+.++..+.
T Consensus 164 ~~~d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~ 237 (405)
T PRK06207 164 AGLDLDQLEEAFKA------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALP 237 (405)
T ss_pred CCcCHHHHHHhhhh------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCC
Confidence 88999999999876 788999999999999999999999999999999999999999999998765444444432
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
. +.+++++++||||.++++|+|+||+++ ++++++.+...... .+.+.+.|.++..++.... .++.+..++
T Consensus 238 ~----~~~~vi~i~SfSK~~~lpGlRiG~ii~-~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~ 309 (405)
T PRK06207 238 I----DPENVITIMGPSKTESLSGYRLGVAFG-SPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD---GWMKDRIAR 309 (405)
T ss_pred C----CcCcEEEEecchhhccCcccceEEEEc-CHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcH---HHHHHHHHH
Confidence 1 267899999999999999999999998 88898988876554 3467788999999987532 233445566
Q ss_pred HHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 235 IKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
+.++++.+.+.|++. ++++..|++|+|+|++++... .++.++...|++++||.+.||..|+...++++|++++
T Consensus 310 ~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~- 383 (405)
T PRK06207 310 HQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLA-----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS- 383 (405)
T ss_pred HHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccC-----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec-
Confidence 777888899999877 788888899999999998531 1346788887777999999999997656789999999
Q ss_pred CCcccHHHHHHHHHHHHHHcC
Q 019899 314 LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~~~ 334 (334)
.+++++++++++|++++++++
T Consensus 384 ~~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 384 QDHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999998764
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=349.48 Aligned_cols=307 Identities=19% Similarity=0.350 Sum_probs=254.4
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
||+|+.+..+ ++++++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.+|+.+++++.+
T Consensus 77 ia~~~~~~~g--~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~ 153 (388)
T PRK07366 77 AAQWYEQRFG--LAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVY-LAGGQIYPMPLRAENDFLP 153 (388)
T ss_pred HHHHHHHhhC--CcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-hcCCEEEEEECCCccCCCC
Confidence 3556655545 678898 69999999999999999999999999999999999999998 8999999999976667888
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCC-cchhhhhhhc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEE-FVSMAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~-~~~~~~~~~~ 158 (334)
|++++++.+.+ +++++++++|+||||.+++.+++++|+++|++|+++||+||+|.++.|++.. ..++..+..
T Consensus 154 d~~~l~~~~~~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~- 226 (388)
T PRK07366 154 VFADIPTEVLA------QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADP- 226 (388)
T ss_pred CHHHHHHhhcc------cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCC-
Confidence 99999887765 6899999999999999999999999999999999999999999999886543 445555443
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCC--h-HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSIS--A-PTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
..+++++++||||.+|++|+|+||+++ ++++++.+.+....+..+ + ..+.+++.+... ++++++.++.+
T Consensus 227 ---~~~~vi~~~SfSK~~g~~GlRiG~~v~-~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~l~~~~~~~ 298 (388)
T PRK07366 227 ---EKSVSIEFFTLSKSYNMGGFRIGFAIG-NAQLIQALRQVKAVVDFNQYRGILNGAIAALTGP----QATVQQTVQIF 298 (388)
T ss_pred ---CcccEEEEeecccccCCcchhheehcC-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc----HHHHHHHHHHH
Confidence 135789999999999999999999998 889999998776554332 2 234444443322 45678888999
Q ss_pred HHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++++.+.+.|+++++.+..|.+|+|+|+++|..... ++.+++..+++++||.+.||..|+...++++|++++ .+
T Consensus 299 ~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~~~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~ 373 (388)
T PRK07366 299 RQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPWQG----NSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV-HD 373 (388)
T ss_pred HHHHHHHHHHHHHCCCcccCCCeeEEEEEECCcccCC----CHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec-CC
Confidence 9999999999999888877889999999999864321 245788887888999999999997655689999998 67
Q ss_pred cccHHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKVA 330 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~ 330 (334)
++++++++++|++++
T Consensus 374 ~~~l~~~l~rl~~~l 388 (388)
T PRK07366 374 PDILEEAVERIAAFL 388 (388)
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999998753
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=350.87 Aligned_cols=313 Identities=22% Similarity=0.385 Sum_probs=259.3
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+|+|+.+..+ +++++++|++|+|+++++..++.+++++||+|++++|+|+.|...+. ..|.+++.+++.+++++.+|
T Consensus 117 iA~~~~~~~~--~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~-~~g~~~~~~~l~~~~~~~~d 193 (462)
T PLN02187 117 VADYMNRDLP--HKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAA-YSGLEVRKFDLLPEKEWEID 193 (462)
T ss_pred HHHHHHHhcC--CCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHH-HcCCEEEEEeCccccCCccC
Confidence 4667766555 67899999999999999999999999999999999999999988888 89999999998666789999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.+++.+++++|+++|++||++||+||+|.++.|++..+.++..+..
T Consensus 194 ~~~l~~~~~~------~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~--- 264 (462)
T PLN02187 194 LEGIEAIADE------NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFAS--- 264 (462)
T ss_pred HHHHHHhcCC------CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhcc---
Confidence 9999988865 7889999999999999999999999999999999999999999999987655556665543
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHH----HHHHHHHhhccc----CCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES----VLAAAKKLTRFC----SISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
..++++++||||.++++|+|+||+++++++ +.+.+......+ +.+.+.|.++..++.... .+++.+.+
T Consensus 265 --~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~ 340 (462)
T PLN02187 265 --IVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKN 340 (462)
T ss_pred --CCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHH
Confidence 356999999999999999999999985443 234555444433 347899999999986522 46778889
Q ss_pred HHHHHHHHHHHHHHHhCCCc--ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEE
Q 019899 233 RRIKKLYDSFVAGLKQLGIR--CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~ 310 (334)
+.++++++.+.+.|++.+.. +..|.+++|+|++++...... ..++.+++..+++++||.+.||..|+. ++++||+
T Consensus 341 ~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~-~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~iRis 417 (462)
T PLN02187 341 KILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDN-IKDDIDFCVKLAREENLVFLPGDALGL--KNWMRIT 417 (462)
T ss_pred HHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCC-CCCHHHHHHHHHhhCCEEEECccccCC--CCeEEEE
Confidence 99999999999999987533 236788999999886421100 113457788888889999999999974 7899999
Q ss_pred ecCCCcccHHHHHHHHHHHHHHc
Q 019899 311 FTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 311 ~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
++ ..++++++++++|.+++++|
T Consensus 418 ~~-~~~e~l~~al~rL~~~l~~~ 439 (462)
T PLN02187 418 IG-VEAHMLEDALERLKGFCTRH 439 (462)
T ss_pred eC-CCHHHHHHHHHHHHHHHHHh
Confidence 99 67889999999999999876
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=344.53 Aligned_cols=308 Identities=23% Similarity=0.406 Sum_probs=262.9
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+++|+.+..+ +.++++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.+++.++ ++.+
T Consensus 100 ia~~~~~~~g--~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~-~~~~ 175 (413)
T PLN00175 100 IAERFKKDTG--LVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS-MAGAKIKTVTLRPP-DFAV 175 (413)
T ss_pred HHHHHHHHhC--CCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-HcCCEEEEEECCcc-cCCC
Confidence 3566666655 667887 79999999999999999999999999999999999999998 89999999998543 4789
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++.+++ +++++++++|+||||.++|.+++++|+++|++|+++||+||+|..+.|++. +.++.++.+.
T Consensus 176 ~~~~l~~~~~~------~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~- 247 (413)
T PLN00175 176 PEDELKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGM- 247 (413)
T ss_pred CHHHHHHhcCc------CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCC-
Confidence 99999999875 789999999999999999999999999999999999999999999988653 3455554321
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+++++++||||.++++|+|+||+++ ++++.+.+..... .++.+.+.|.++..++... +.++.+.++.+++
T Consensus 248 ---~~~vi~i~SfSK~~~~~G~RiG~~v~-~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~ 320 (413)
T PLN00175 248 ---YERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSA 320 (413)
T ss_pred ---cCcEEEEecchhhccCcchheeeeEe-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHH
Confidence 57899999999999999999999998 8888888876653 4678999999999999764 4567888899999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC---CCCeEEEEecCC
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI---EPGWFRCCFTSL 314 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~---~~~~iRi~~~~~ 314 (334)
+++.+.+.|++.|+.+..|.+++|+|+++++... .++.+++..|++++||.+.||..|+.. .++++|++++ .
T Consensus 321 ~~~~l~~~L~~~g~~~~~p~g~~f~~~~~~~~~~----~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~-~ 395 (413)
T PLN00175 321 KKDILVEGLKEVGFKVYPSSGTYFVMVDHTPFGF----ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC-K 395 (413)
T ss_pred HHHHHHHHHHHCCCeecCCCeeEEEEEeccccCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc-C
Confidence 9999999999999988889999999999853210 124689999888899999999988642 3579999999 6
Q ss_pred CcccHHHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVAET 332 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~ 332 (334)
+++++++++++|++++++
T Consensus 396 ~~e~l~~~~~rL~~~~~~ 413 (413)
T PLN00175 396 DEETLRAAVERMKTKLKR 413 (413)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 899999999999998864
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-47 Score=348.74 Aligned_cols=329 Identities=22% Similarity=0.370 Sum_probs=263.7
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
||+|+.++.+ +.+++++|++|+|+++++..++.+++ ++||.|+++.|+|+.|...++ ..|.+++.+++.++++|.+
T Consensus 124 ia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~-~~g~~~v~v~~~~~~~~~~ 200 (481)
T PTZ00377 124 VAAFIERRDG--VPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAIT-LLGGKQVPYYLDEEKGWSL 200 (481)
T ss_pred HHHHHHHhcC--CCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHH-HcCCEEEEEEeccccCCCC
Confidence 4667766555 77899999999999999999999998 799999999999999999999 8999999999876778899
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCC-CCcchhhhhhhc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGN-EEFVSMAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~-~~~~~~~~~~~~ 158 (334)
|++++++++++...++.+++++++++|+||||.++|.+++++|+++|++|+++||+||+|+.+.|.+ ..+.++..+...
T Consensus 201 d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~ 280 (481)
T PTZ00377 201 DQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLE 280 (481)
T ss_pred CHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHh
Confidence 9999999998655555578999999999999999999999999999999999999999999998843 344555443221
Q ss_pred cccC---CCcEEEEeccccc-CCCCCceEEEEee--cCHHHHHHHHHhhcc-cCCChHHHHHHHHhhCCh-------HHH
Q 019899 159 EEVD---KDRVHIIYGLSKD-LSLPGFRTGVIYS--YNESVLAAAKKLTRF-CSISAPTQRLLISMLSDT-------KFI 224 (334)
Q Consensus 159 ~~~~---~~~~~~~~s~sK~-~~~~g~r~g~i~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-------~~~ 224 (334)
..-+ ..++++++||||. ++++|+|+||+++ .++++++.+.+.... ++.+++.|.++..++... +..
T Consensus 281 l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~ 360 (481)
T PTZ00377 281 LPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLY 360 (481)
T ss_pred hcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHH
Confidence 0000 1268999999998 5899999999986 378888888776543 478889999999998531 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCc--CCCC----ChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGL--IPSY----SEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~--~~~~----~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
.+++.+..+.++++++.+.+.|+++ |+.+..|++|+|+|++++.+ .... ...++.+++..+++++||.+.||+
T Consensus 361 ~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~ 440 (481)
T PTZ00377 361 KRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGS 440 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCc
Confidence 3334555566889999999999987 88888999999999876421 1000 001234567788888999999999
Q ss_pred CcCCC-CCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 298 ACHCI-EPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 298 ~~~~~-~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.|+.. .++++|++++ .+++++++++++|+++++++
T Consensus 441 ~F~~~~~~~~~Rls~~-~~~e~l~~~l~rl~~~~~~~ 476 (481)
T PTZ00377 441 GFGQKPGTYHFRITIL-PPEEQIEEMVKKIKEFHESF 476 (481)
T ss_pred ccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHH
Confidence 99853 3469999999 77889999999999998763
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=342.72 Aligned_cols=305 Identities=24% Similarity=0.394 Sum_probs=255.5
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+|+|+.+..+ +.++++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.+|+++++++.+
T Consensus 79 ia~~~~~~~g--~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-~~g~~~~~i~~~~~~~~~~ 155 (389)
T PRK08068 79 AADFYKREYG--VTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVA-LARAQFETMPLIAENNFLP 155 (389)
T ss_pred HHHHHHHHhC--CCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-hcCCEEEEeecccccCCCC
Confidence 3566665555 667888 89999999999999999999999999999999999999998 8999999999865567889
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++.+++ +++++++++|+||||.++|.+++++|+++|++++++||+||+|+++.+.+....++.....
T Consensus 156 d~~~l~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~-- 227 (389)
T PRK08068 156 DYTKIPEEVAE------KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPG-- 227 (389)
T ss_pred CHHHHHHhccc------cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCC--
Confidence 99999998865 7899999999999999999999999999999999999999999998886543444433322
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..++++++.||||.+|++|+|+||+++ ++++++.+.+....+. .++..|.++..++... .+++.+.++++++
T Consensus 228 --~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~ 301 (389)
T PRK08068 228 --AKDVGIELYTLSKTFNMAGWRVAFAVG-NESVIEAINLLQDHLFVSLFGAIQDAAIEALLSD---QSCVAELVARYES 301 (389)
T ss_pred --ccCCEEEEecchhccCCccceeEeEec-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCc---HHHHHHHHHHHHH
Confidence 156789999999999999999999998 8899999887665543 3455777777777553 2566788899999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|+++|+.+..+.+|+|+|+++++.. ++.++...|++++||.+.||..|+...++++|++++ .+++
T Consensus 302 ~r~~~~~~L~~~g~~~~~~~g~~~~~v~~~~~~------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~ 374 (389)
T PRK08068 302 RRNAFISACREIGWEVDAPKGSFFAWMPVPKGY------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL-TDEE 374 (389)
T ss_pred HHHHHHHHHHHCCCcccCCCeeEEEEEECCCCC------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc-CCHH
Confidence 999999999999988888899999999998642 346888997777899999999987655789999998 5677
Q ss_pred cHHHHHHHHHHH
Q 019899 318 DIPLVIERIQKV 329 (334)
Q Consensus 318 ~l~~~l~~l~~~ 329 (334)
.+..++++|+++
T Consensus 375 ~l~~al~~l~~~ 386 (389)
T PRK08068 375 RLREAVERIGKL 386 (389)
T ss_pred HHHHHHHHHHHh
Confidence 788888877753
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=342.53 Aligned_cols=310 Identities=23% Similarity=0.462 Sum_probs=263.5
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+|+|+.+.++ +.++++ +|++|+|+++++.+++.+++++||+|++++|+|+.+...++ ..|.+++.+++..++++.+
T Consensus 66 ia~~~~~~~g--~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 142 (378)
T PRK07682 66 IAKYLKKRFA--VSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVT-LAGGVPVPVATTLENEFKV 142 (378)
T ss_pred HHHHHHHHhC--CCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHH-HcCCEEEEeecCCccCCCC
Confidence 3667776656 567776 79999999999999999999999999999999999999888 8899999999765567899
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ +++++++++|+||||.+++.+++++|+++|++|++++|+||+|+++.+++. +.++..+.+
T Consensus 143 d~~~l~~~~~~------~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~-- 213 (378)
T PRK07682 143 QPAQIEAAITA------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKG-- 213 (378)
T ss_pred CHHHHHhhcCc------ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhccc--
Confidence 99999998876 789999999999999999999999999999999999999999999998653 334444332
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
. .++++++.||||.++++|+|+||+++ ++++++.+..... .++.+++.|.++..++++.+ .++.+.++.+++
T Consensus 214 -~-~~~~i~~~S~SK~~~~~GlR~G~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~ 287 (378)
T PRK07682 214 -M-RERTILISGFSKGFAMTGWRLGFIAA-PVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGN---DDVIRMRDSYRK 287 (378)
T ss_pred -c-cCCEEEEecCcccccChhhhhhhhhc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh---HHHHHHHHHHHH
Confidence 1 46899999999999999999999998 8889998876543 34678899999999997643 346778889999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|+++|+++..|.+++++|++++... .++.++...+++++||.+.||..|+...++++|++++ .+++
T Consensus 288 ~~~~~~~~L~~~~~~~~~p~g~~~~~~~~~~~~-----~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~ 361 (378)
T PRK07682 288 RRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTG-----LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA-TSLE 361 (378)
T ss_pred HHHHHHHHHHHCCCccCCCCeeEEEEEeccCCC-----CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC-CCHH
Confidence 999999999999998888999999999885421 1346788888877899999999997655789999999 5789
Q ss_pred cHHHHHHHHHHHHHHcC
Q 019899 318 DIPLVIERIQKVAETCK 334 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~~ 334 (334)
++++++++|++++++.+
T Consensus 362 ~l~~~l~~l~~~l~~~~ 378 (378)
T PRK07682 362 QLQEAMKRMKRFVENKK 378 (378)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999998764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=343.95 Aligned_cols=314 Identities=24% Similarity=0.410 Sum_probs=261.3
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++|+.+..+ ..+++++|++|+|+++++.+++..+.++||+|+++.|+|+.|..... ..|.+++.+++.+++++.+|
T Consensus 103 ia~~~~~~~~--~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~-~~g~~~~~~~~~~~~~~~~d 179 (430)
T PLN00145 103 IAEYLSRDLP--YELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAV-FSGLEVRHFDLLPERGWEVD 179 (430)
T ss_pred HHHHHhhccC--CCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-HcCCEEEEeeCCcccCCcCC
Confidence 3566655545 66788999999999999999999999999999999999999988888 88999999998666788999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.|++..+.++..+..
T Consensus 180 ~~~l~~~~~~------~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~--- 250 (430)
T PLN00145 180 LEGVEALADE------NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGE--- 250 (430)
T ss_pred HHHHHHHhCc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcc---
Confidence 9999998876 7899999999999999999999999999999999999999999999987655566655543
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecC-HHHH------HHHHHhhccc-CCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYN-ESVL------AAAKKLTRFC-SISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~-~~~~------~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.+++++++||||.|+++|+|+||+++++ +.+. +.+....... +.+++.|.++..++.... ++++.+.+
T Consensus 251 --~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~ 326 (430)
T PLN00145 251 --VAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTL 326 (430)
T ss_pred --cCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHH
Confidence 5689999999999999999999999743 3332 3344443333 457889999999987632 56678888
Q ss_pred HHHHHHHHHHHHHHHhC-CCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEE
Q 019899 233 RRIKKLYDSFVAGLKQL-GIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~ 310 (334)
++++++++.+.+.|++. ++.+. .|++++|+|++++...-. ...++.+++..|++++||.+.||..|+. ++|+||+
T Consensus 327 ~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis 403 (430)
T PLN00145 327 GLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLS-GIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRIT 403 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEE
Confidence 99999999999999887 77754 689999999998742100 0013467888889999999999999975 6899999
Q ss_pred ecCCCcccHHHHHHHHHHHHHHcC
Q 019899 311 FTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 311 ~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
++ .+++++++++++|++++.+|+
T Consensus 404 ~~-~~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 404 FA-IDPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred eC-CCHHHHHHHHHHHHHHHHHhc
Confidence 99 688899999999999998874
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=340.85 Aligned_cols=305 Identities=24% Similarity=0.417 Sum_probs=259.7
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+|+|+.+..+ +++++++|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.+++.+++++.+|
T Consensus 75 ia~~~~~~~~--~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~d 151 (384)
T PRK06348 75 IIKYYSKNYD--LSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIE-MVGGKPIILETYEEDGFQIN 151 (384)
T ss_pred HHHHHHHHhC--CCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-HcCCEEEEecCCcCcCCcCC
Confidence 4667766656 77899999999999999999999999999999999999999999998 88999999987655678899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.++|.+++++|+++|++++++||+||+|+++.+++ ...++..+..
T Consensus 152 ~~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~--- 221 (384)
T PRK06348 152 VKKLEALITS------KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAG--- 221 (384)
T ss_pred HHHHHHhhCc------CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCC---
Confidence 9999998875 78999999999999999999999999999999999999999999998864 3334444432
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..+++++++||||.++++|+|+||+++ ++++++.+..... .++.+++.|.++..++... +++.++.++.++++
T Consensus 222 -~~~~vi~~~SfSK~~~l~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r 296 (384)
T PRK06348 222 -MPERTITFGSFSKDFAMTGWRIGYVIA-PDYIIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKR 296 (384)
T ss_pred -CcCcEEEEecchhccCCccccceeeec-CHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHH
Confidence 157899999999999999999999998 7888888877654 4678899999999888653 45567788889999
Q ss_pred HHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 239 YDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 239 ~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
++.+.+.|++. ++++..+.+|+|+|++++... .+..+++..+++++||.+.||+.|+...++++|++++ .+++
T Consensus 297 ~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~~~-----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~ 370 (384)
T PRK06348 297 LEYAYKRIESIPNLSLHPPKGSIYAFINIKKTG-----LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT-VGIE 370 (384)
T ss_pred HHHHHHHHhcCCCceeccCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec-CCHH
Confidence 99999999886 677778899999999997421 1346888887888899999999998655789999998 7889
Q ss_pred cHHHHHHHHHHH
Q 019899 318 DIPLVIERIQKV 329 (334)
Q Consensus 318 ~l~~~l~~l~~~ 329 (334)
++++++++|+++
T Consensus 371 ~l~~al~~l~~~ 382 (384)
T PRK06348 371 VLEEAFNRIEKM 382 (384)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=344.40 Aligned_cols=318 Identities=22% Similarity=0.349 Sum_probs=258.4
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+|+|+.++.+ +.+++++|++|+|+++++..++. ++++||.|++++|+|+.+........|.+++.+++++++++.+|
T Consensus 82 ia~~~~~~~g--~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d 158 (433)
T PRK06855 82 LAELNNKRGG--AQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPD 158 (433)
T ss_pred HHHHHHhccC--CCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCC
Confidence 4667776555 67889999999999999999985 78999999999999998765433246888999998666778899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++|+++++.. .+++++++++|+||||.++|.+++++|+++|++|+++||+||+|+.+.|.+..+.++.++.+
T Consensus 159 ~~~l~~~~~~~----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~--- 231 (433)
T PRK06855 159 LDDLENKVKYN----PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG--- 231 (433)
T ss_pred HHHHHHHHhcC----CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcC---
Confidence 99999998731 25788999999999999999999999999999999999999999999987665667766643
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeec----CHH---HHHHHHHhh-cccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSY----NES---VLAAAKKLT-RFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~----~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
...+++++||||.++++|+|+||++++ ++. +.+.+.... ...+.+++.|.++..++.+.++ ++++++++
T Consensus 232 --~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~ 308 (433)
T PRK06855 232 --DVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-KNYLKERN 308 (433)
T ss_pred --cCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-HHHHHHHH
Confidence 346799999999999999999999973 232 233332222 2345788999999999987543 67788899
Q ss_pred HHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCC-------CC--------------hhhHHHHHHHHHHhcC
Q 019899 233 RRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPS-------YS--------------EKGELELWDKLLNIAK 290 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~-------~~--------------~~~~~~~~~~ll~~~g 290 (334)
+.++++++.+.+.|++. ++.+..|.+|||+|+++|+.... .. ..++.+++..++++.|
T Consensus 309 ~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 388 (433)
T PRK06855 309 KRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTG 388 (433)
T ss_pred HHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcC
Confidence 99999999999999886 77888899999999999864200 00 0134678888888899
Q ss_pred eEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 291 INVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 291 i~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
|.+.||..|+. ..+++|++++..+++++++++++|++++++
T Consensus 389 V~v~PG~~F~~-~~~~~Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 389 ICVVPLSSFCT-ELNGFRVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred EEEecCCcCCC-CCCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 99999999975 345699999977899999999999999875
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-47 Score=340.69 Aligned_cols=304 Identities=24% Similarity=0.404 Sum_probs=258.6
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+|+|+.+..+ ++++++ +|++|+|+++++..++..++++||+|++++|+|+.+...++ ..|.+++.+|+.+++++.+
T Consensus 76 ia~~~~~~~~--~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-~~G~~v~~v~~~~~~g~~~ 152 (383)
T TIGR03540 76 VADWYKRRFG--VELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTL-FAGGEPYEMPLKEENGFLP 152 (383)
T ss_pred HHHHHHHhhC--CCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHH-hcCCEEEEEecCcccCCcc
Confidence 3566666555 566776 69999999999999999999999999999999999999888 8999999999876667888
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ +++++++++|+||||.++|.+++++|+++|++|++++|+||+|+++.|.+....++..+..
T Consensus 153 d~~~l~~~~~~------~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~-- 224 (383)
T TIGR03540 153 DFDAIPEDIAK------KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDG-- 224 (383)
T ss_pred CHHHHHhhccc------cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCC--
Confidence 99999988865 7899999999999999999999999999999999999999999999887655556555432
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..+++++++||||.+|++|+|+||+++ ++++++.+...... .+.+.+.|.++..++... .+++.++++.+++
T Consensus 225 --~~~~~i~~~SfSK~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~ 298 (383)
T TIGR03540 225 --AKDVGIEFHSLSKTYNMTGWRIGMAVG-NADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQR 298 (383)
T ss_pred --cccCEEEEEecccccCCccceeeEEeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHH
Confidence 146789999999999999999999998 88898888766543 356778899888888764 4566778889999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|++.|+.+..+.+|+++|++++... +..+++..+++++||.+.||..|+...++++|++++ .+++
T Consensus 299 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~-~~~~ 371 (383)
T TIGR03540 299 RRDLLLEALKKIGIDVEKPKATFYVWVPVPEGY------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT-VPDE 371 (383)
T ss_pred HHHHHHHHHHhCCCEecCCCcceEEEEECCCCC------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec-CCHH
Confidence 999999999999998888889999999998543 346888888888999999999997655689999998 6778
Q ss_pred cHHHHHHHHHH
Q 019899 318 DIPLVIERIQK 328 (334)
Q Consensus 318 ~l~~~l~~l~~ 328 (334)
++.+++++|++
T Consensus 372 ~l~~~l~~l~~ 382 (383)
T TIGR03540 372 RLEEAVARIKK 382 (383)
T ss_pred HHHHHHHHHhh
Confidence 88888888764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-47 Score=351.50 Aligned_cols=316 Identities=22% Similarity=0.371 Sum_probs=257.9
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.++.+ .++++++|++|+|+++++..++.+++++||+|++++|+|+.|...+. ..|.+++.+++.++++|.+|
T Consensus 194 ia~~~~~~~~--~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~-~~g~~~v~~~~~~~~~~~~d 270 (517)
T PRK13355 194 IMQYAQLKGL--PNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVN-LAGGTAVHYRCDEQSEWYPD 270 (517)
T ss_pred HHHHHHhcCC--CCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHH-HCCCEEEEeecCcccCCCCC
Confidence 3556654322 35789999999999999999999999999999999999999999888 89999999998766789999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.+++.+++++|+++|++|+++||+||+|..+.|++..+.++..+.+
T Consensus 271 ~~~l~~~~~~------~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~--- 341 (517)
T PRK13355 271 IDDIRSKITS------RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP--- 341 (517)
T ss_pred HHHHHHhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC---
Confidence 9999998876 7899999999999999999999999999999999999999999999987765666666543
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeec-CHH----HHHHHHHhhcc-cCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSY-NES----VLAAAKKLTRF-CSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~-~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
...+++++||||.++++|+|+||++++ +++ +++.+...... ++.+.+.|.++..++...+...+++.+. .+
T Consensus 342 --~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~ 418 (517)
T PRK13355 342 --DLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPG-GR 418 (517)
T ss_pred --CCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHH-HH
Confidence 335777899999999999999999963 343 34444333322 5678899999999986543334555544 34
Q ss_pred HHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 235 IKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
+.++++++.+.|+++ |+.+..|.++||+|++++..... ..++.+++..+++++||.+.||..|+...++++|++++
T Consensus 419 ~~~~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~~~--~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~- 495 (517)
T PRK13355 419 VYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKFN--IHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL- 495 (517)
T ss_pred HHHHHHHHHHHHhcCCCcccCCCCeeeEEEeecCcccCC--CCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC-
Confidence 455678999999888 88999999999999998752100 11345778888888999999999997656789999997
Q ss_pred CCcccHHHHHHHHHHHHHHcC
Q 019899 314 LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~~~ 334 (334)
.+++++++++++|++++++++
T Consensus 496 ~~~~~l~~a~~rl~~~~~~~~ 516 (517)
T PRK13355 496 PRLEDLEDAMDRLADFFSYYR 516 (517)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 788999999999999998753
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=339.83 Aligned_cols=312 Identities=22% Similarity=0.367 Sum_probs=257.9
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+|+|+.++.+ +.++++ +|++|+|+++++..++.+++++||+|++++|+|+.+...+. ..|.+++.+++..++++
T Consensus 77 ia~~~~~~~g--~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-~~g~~v~~v~~~~~~~~-- 151 (405)
T PRK09148 77 QAAYYARRFG--VKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFI-MAGGVIRSVPAEPDEEF-- 151 (405)
T ss_pred HHHHHHHHhC--CCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-hcCCEEEEEeCCCCCCC--
Confidence 3566665555 567787 89999999999999999999999999999999999998888 89999999998544443
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++++++++.. ..+++++++++|+||||.++|.+++++|+++|++|+++||+||+|+++.|++..+.++..+..
T Consensus 152 -~~~l~~~~~~~---~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~-- 225 (405)
T PRK09148 152 -FPALERAVRHS---IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPG-- 225 (405)
T ss_pred -ccCHHHHHhhc---cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCC--
Confidence 34455544421 126889999999999999999999999999999999999999999999886644444544422
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..+++++++||||.+|++|+|+||+++ ++++++.+.+... .++.+++.|.++..++... ++++.++++.+++
T Consensus 226 --~~~~~i~~~SfSK~~~~pGlR~G~~v~-~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~ 299 (405)
T PRK09148 226 --AKDVTVEFTSMSKTFSMAGWRMGFAVG-NERLIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKK 299 (405)
T ss_pred --ccCcEEEEeccccccCCcchheeeeeC-CHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHH
Confidence 146788899999999999999999998 8899999987655 3567889999999998753 4566788889999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|+++++.+..|.+|+|+|+++|..... .+..++...+++++||.+.||..|+...++++||+++ .+++
T Consensus 300 ~r~~l~~~L~~~~~~~~~p~~g~f~~~~l~~~~~~---~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~-~~~~ 375 (405)
T PRK09148 300 RRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFRH---LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV-ENEQ 375 (405)
T ss_pred HHHHHHHHHHHcCCccCCCCeeEEEEEECCCccCC---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHH
Confidence 99999999999888877889999999999864321 1246788888888999999999997555689999998 7889
Q ss_pred cHHHHHHHHHHHHHHc
Q 019899 318 DIPLVIERIQKVAETC 333 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~ 333 (334)
++.+++++|.+++.++
T Consensus 376 ~l~~al~~l~~~l~~~ 391 (405)
T PRK09148 376 RIRQAARNIKRFLSSA 391 (405)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=340.26 Aligned_cols=305 Identities=22% Similarity=0.389 Sum_probs=257.2
Q ss_pred ChhhhhhhhcCCCCCCCCc-EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQ-IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~-i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+|+|+.++.+ +.+++++ |++|+|+++++..++.+++++||+|++++|+|+.+...+. ..|.+++.++++.++++.+
T Consensus 82 ia~~~~~~~~--~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~ 158 (394)
T PRK05942 82 ITDWYHRRYG--VELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPL-IAGAQIYPIILKPENDWLI 158 (394)
T ss_pred HHHHHHHHHC--CCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-HcCCEEEEeecCCccCCcc
Confidence 3567766555 6678884 9999999999999999999999999999999999998888 8999999999866667889
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++.+++ +++++++++|+||||.++|.+++++|+++|++++++||+||+|..+.+.+....++..+..
T Consensus 159 d~~~l~~~~~~------~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~-- 230 (394)
T PRK05942 159 DLSSIPEEVAQ------QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPG-- 230 (394)
T ss_pred CHHHHHHhccc------cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCC--
Confidence 99999998875 7899999999999999999999999999999999999999999999886655555554432
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..+.+++++||||.+|++|+|+||+++ ++++++.++.... .++.++.+|.++..+++.. ++++.+.++++++
T Consensus 231 --~~~~~i~~~SfSK~~~~~GlRiG~i~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~ 304 (394)
T PRK05942 231 --AKDIGVEFHTLSKTYNMAGWRVGFVVG-NRHIIQGLRTLKTNLDYGIFSALQKAAETALQLP---DSYLQQVQERYRT 304 (394)
T ss_pred --ccccEEEEecchhccCChhhheeeeec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHH
Confidence 145678899999999999999999998 8899999987654 4567888999988888642 4566788889999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|++.++.+..+.+|+|+|+++|...+ +.++..++++++||.+.||..|+...++++|++++ .+.+
T Consensus 305 ~~~~~~~~L~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-~~~~ 377 (394)
T PRK05942 305 RRDFLIQGLGELGWNIPPTKATMYLWVPCPVGMG------STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI-ADCD 377 (394)
T ss_pred HHHHHHHHHHHCCCeecCCCeeeEEEEECCCCCC------HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec-CCHH
Confidence 9999999999888888888999999999986432 35777777888999999999987655789999998 5566
Q ss_pred cHHHHHHHHHHH
Q 019899 318 DIPLVIERIQKV 329 (334)
Q Consensus 318 ~l~~~l~~l~~~ 329 (334)
.+.+++++++++
T Consensus 378 ~l~~~l~~l~~~ 389 (394)
T PRK05942 378 RLGEALDRLKQA 389 (394)
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=339.45 Aligned_cols=304 Identities=26% Similarity=0.412 Sum_probs=257.1
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+++|+.+..+ +.++++ +|++|+|+++++..++..++++||+|++++|+|+.+...++ ..|.+++.+++..++++.+
T Consensus 78 ia~~~~~~~g--~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~-~~g~~~~~v~~~~~~g~~~ 154 (385)
T PRK09276 78 VADWYKRRFG--VELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTI-FAGGEPYFMPLKEENGFLP 154 (385)
T ss_pred HHHHHHHHhC--CCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHH-HcCCEEEEEecCCCCCCcC
Confidence 3566665555 556777 59999999999999999999999999999999999999888 8999999999865567888
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++.+.+ +++++++++|+||||.++|.+++++|+++|++|+++||+||+|.++.+++....++..+..
T Consensus 155 d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-- 226 (385)
T PRK09276 155 DLDAIPEDVAK------KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPG-- 226 (385)
T ss_pred CHHHHHHhccc------cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCC--
Confidence 99999888765 7899999999999999999999999999999999999999999999887655556655432
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..++++++.||||.+|++|+|+||+++ ++++++.+.+.... .+.+.+.|.++..++... ..++++.++++++
T Consensus 227 --~~~~~i~~~S~SK~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~ 300 (385)
T PRK09276 227 --AKDVGIEFHSLSKTYNMTGWRIGFAVG-NADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQE 300 (385)
T ss_pred --CcCCEEEEecchhhcCCcchhheeeeC-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHH
Confidence 146789999999999999999999998 88898888776543 345667888888888652 4566788889999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|++.++++..+.+|+|+|++++... +..++...|++++||.+.||..|+...++++|++++ .+++
T Consensus 301 ~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~-~~~~ 373 (385)
T PRK09276 301 RRDILVEGLRKLGLEVEPPKATFYVWAPVPKGY------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT-VPDE 373 (385)
T ss_pred HHHHHHHHHHhCCCcccCCCcceEEEEECCCCC------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC-CCHH
Confidence 999999999998988888889999999998643 346788898888999999999987655689999998 6778
Q ss_pred cHHHHHHHHHH
Q 019899 318 DIPLVIERIQK 328 (334)
Q Consensus 318 ~l~~~l~~l~~ 328 (334)
++.+++++|++
T Consensus 374 ~l~~~l~~l~~ 384 (385)
T PRK09276 374 RIEEAVERIKK 384 (385)
T ss_pred HHHHHHHHHhh
Confidence 88888888764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=343.61 Aligned_cols=328 Identities=22% Similarity=0.404 Sum_probs=262.5
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
||+|+.++.+ +.+++++|++|+|+++++..++..++ .+||.|+++.|+|+.|...+. ..|.+++.++++++++|.+
T Consensus 177 IA~~~~~r~g--~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~-~~g~~~v~~~l~~~~~~~~ 253 (534)
T PLN02231 177 IAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIA-LHGGTLVPYYLDEATGWGL 253 (534)
T ss_pred HHHHHHhccC--CCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHH-HcCCEEEEEecCcccCCCC
Confidence 4667766555 77899999999999999999999998 479999999999999999998 8999999999976677999
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC-CCCcchhhhhhhc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG-NEEFVSMAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~-~~~~~~~~~~~~~ 158 (334)
|+++|++++++...++.+++++++++|+||||.+++.+++++|+++|++++++||+||+|+++.|. +..+.++..+..+
T Consensus 254 d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~ 333 (534)
T PLN02231 254 EISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARS 333 (534)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhh
Confidence 999999999876555557899999999999999999999999999999999999999999999995 4456677666432
Q ss_pred cccC--CCcEEEEecccccC-CCCCceEEEEeec--CHHHHHHHHHhhcc-cCCChHHHHHHHHhhCCh----HHHHH--
Q 019899 159 EEVD--KDRVHIIYGLSKDL-SLPGFRTGVIYSY--NESVLAAAKKLTRF-CSISAPTQRLLISMLSDT----KFIQE-- 226 (334)
Q Consensus 159 ~~~~--~~~~~~~~s~sK~~-~~~g~r~g~i~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~----~~~~~-- 226 (334)
.+++ ..++++++|+||.+ |++|+|+||+++. ++++++.+.+.... .+.+...|.++..++... ...++
T Consensus 334 ~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~ 413 (534)
T PLN02231 334 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYM 413 (534)
T ss_pred hccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchHHHHH
Confidence 1111 23689999999976 8899999999863 68888888765443 345667788777777531 11233
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecC--Cc-CCCC---ChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 227 -YLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMS--GL-IPSY---SEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~--~~-~~~~---~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+..+.++.++++++.+.+.|+++ |+.+..|++|||+|.+++ .. .... ...++..++..|+++.||.+.||+.
T Consensus 414 ~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~ 493 (534)
T PLN02231 414 AEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSG 493 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcc
Confidence 33456789999999999999987 899999999999996553 21 0000 0012334678888889999999999
Q ss_pred cCCCC-CCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 299 CHCIE-PGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 ~~~~~-~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
|+... ..++|+++. .+++++++++++|++++++
T Consensus 494 Fg~~~g~~~~Rit~~-~~~e~l~eal~RL~~~~~~ 527 (534)
T PLN02231 494 FGQVPGTWHFRCTIL-PQEDKIPAIVSRLTEFHKS 527 (534)
T ss_pred cCCCCCCCeEEEEeC-CCHHHHHHHHHHHHHHHHH
Confidence 98633 457999997 7889999999999988765
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=338.79 Aligned_cols=313 Identities=20% Similarity=0.350 Sum_probs=253.6
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.++.+ +++++++|++|+|+++++..++.+++++||.|++++|+|+.+...+. ..|.+++.+++.+++++.+|
T Consensus 83 ia~~~~~~~g--~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~d 159 (409)
T PLN00143 83 IADYLSNDLP--YQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAI-FHHLEIRHFDLLPEKGWEVD 159 (409)
T ss_pred HHHHHHhhcC--CCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHH-HcCCEEEEEeccCCCCCcCC
Confidence 3566666555 67899999999999999999999999999999999999999999888 89999999998655678899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++++++. +++++++++|+||||.+++.+++++|+++|++|+++||+||+|.++.|.+..+.++..+..
T Consensus 160 ~~~l~~~~~~------~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~--- 230 (409)
T PLN00143 160 LDAVEAIADE------NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFAS--- 230 (409)
T ss_pred HHHHHHhccc------CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcc---
Confidence 9999988865 6888999999999999999999999999999999999999999999987654445444433
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCH-HHH------HHHHHhhc-ccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE-SVL------AAAKKLTR-FCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~-~~~------~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.+++++++||||.++++|+|+||++++++ .++ +.+.+... ....+.+.|.++..++.+.. .+++.+.+
T Consensus 231 --~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~ 306 (409)
T PLN00143 231 --IVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTI 306 (409)
T ss_pred --cCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHH
Confidence 56899999999999999999999998433 332 33333322 22347789999999987531 34566777
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEE
Q 019899 233 RRIKKLYDSFVAGLKQLGIRC--SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~ 310 (334)
+.++++++.+.+.|++++... ..|++|+|+|++++..... ...++.+++..+++++||.+.||..|+. ++++|++
T Consensus 307 ~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRi~ 383 (409)
T PLN00143 307 NILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLE-DIEDDMEFCLKLAKEESLIILPGVTVGL--KNWLRIT 383 (409)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEE
Confidence 788888888888888874332 3678999999999752100 0113457777878889999999999864 6899999
Q ss_pred ecCCCcccHHHHHHHHHHHHHHc
Q 019899 311 FTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 311 ~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
++ .+++++++++++|++++++|
T Consensus 384 ~~-~~~~~l~~al~rl~~~l~~~ 405 (409)
T PLN00143 384 FA-VEQSSLEDGLGRLKSFCGRH 405 (409)
T ss_pred Ec-CCHHHHHHHHHHHHHHHHHh
Confidence 99 77899999999999999876
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=341.33 Aligned_cols=306 Identities=26% Similarity=0.394 Sum_probs=269.0
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++++....+ +.+++++|++|+|+++|++++...++++||.|++++|+|++....++ ..|.+++.||+ ++.++|+
T Consensus 142 a~~l~~~~g--~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~-~~g~~~~~vp~---d~~G~~~ 215 (459)
T COG1167 142 AAYLLARRG--ISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALE-ALGARVIPVPV---DEDGIDP 215 (459)
T ss_pred HHHHHHhcC--CccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHH-HcCCcEEecCC---CCCCCCH
Confidence 556664455 89999999999999999999999999999999999999999999999 99999999997 4568999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++|++.++.. ++|+++++.. +||||.++|.++.++|+++|++|+++||+||.|+.+.|++.+..++..++.
T Consensus 216 e~le~~~~~~-----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~--- 287 (459)
T COG1167 216 EALEEALAQW-----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDA--- 287 (459)
T ss_pred HHHHHHHhhc-----CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCC---
Confidence 9999999875 7896655544 899999999999999999999999999999999999999887778888876
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++|++++||||++. ||+|+||+++ ++++++.+.... ...+++.+.|.+++..+..+. ..+++.+++..++++
T Consensus 288 --~~rViy~gSFSK~l~-PglRlG~vv~-p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~-~~~hl~~lR~~y~~r 362 (459)
T COG1167 288 --PGRVIYLGSFSKTLA-PGLRLGYVVA-PPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGH-YDRHLRRLRREYARR 362 (459)
T ss_pred --CCCEEEEeeehhhcc-cccceeeeeC-CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 799999999999997 9999999999 888888887654 446788999999999998554 588999999999999
Q ss_pred HHHHHHHHHhC---CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC-CCCcCCCC--CCeEEEEec
Q 019899 239 YDSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP-GSACHCIE--PGWFRCCFT 312 (334)
Q Consensus 239 ~~~~~~~l~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~~~~~~--~~~iRi~~~ 312 (334)
++.+.+.|++. .+.+..|.+|+++|+++|...+ ..++...++ ++|+.+.| |..|.... .+++|++++
T Consensus 363 r~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~------~~~l~~~a~-~~gv~i~~~g~~f~~~~~~~~~~Rl~~s 435 (459)
T COG1167 363 RDALLEALAEYLPELATWTRPEGGLFLWLELPEGID------ARELLAAAL-EKGVVVTPLGSAFSADGDPRNGLRLSFS 435 (459)
T ss_pred HHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCCC------HHHHHHHHH-HCCCEEEcCCccccCCCCCCCeEEEEcC
Confidence 99999999997 3567789999999999998765 357777744 47999888 88887654 468999999
Q ss_pred CCCcccHHHHHHHHHHHHHHc
Q 019899 313 SLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 313 ~~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++++++++++.|.++++++
T Consensus 436 ~~~~e~i~~gi~~l~~~~~~~ 456 (459)
T COG1167 436 SPSEEEIEEGIKRLAALLREA 456 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998764
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=334.72 Aligned_cols=305 Identities=24% Similarity=0.416 Sum_probs=257.5
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+|+|+.++.+ +++++++|++|+|+++++..++.+++++||+|++++|+|+.+...+. ..|.+++.++++.++++.+|
T Consensus 78 ia~~~~~~~g--~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d 154 (387)
T PRK08960 78 IAGFYAQRYG--VDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLR-LVEGAAQLVPVGPDSRYQLT 154 (387)
T ss_pred HHHHHHHHhC--CCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCCeEEEEecCcccCCCCC
Confidence 3566666555 67899999999999999999999999999999999999999999888 88999999998666678899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++.+++++++ +++++++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ..++...
T Consensus 155 ~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~~----- 222 (387)
T PRK08960 155 PALVERHWNA------DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLEV----- 222 (387)
T ss_pred HHHHHHHhCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhhc-----
Confidence 9999998876 678899999999999999999999999999999999999999999887542 2333222
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+++++++||||.+|++|+|+||+++ ++++++.++..... .+.+.+.|.++..++... ..+++.+.++.++++
T Consensus 223 --~~~vi~~~S~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~ 297 (387)
T PRK08960 223 --DDDAFVLNSFSKYFGMTGWRLGWLVA-PPAAVPELEKLAQNLYISASTPAQHAALACFEPE--TLAILEARRAEFARR 297 (387)
T ss_pred --cCCEEEEeecccccCCcccEEEEEEc-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 46789999999999999999999998 78888888776553 466889999888888642 246678888999999
Q ss_pred HHHHHHHHHhCCCcc-cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecCCCc
Q 019899 239 YDSFVAGLKQLGIRC-SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTSLTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~~~~ 316 (334)
++.+.+.|+++|+.+ ..|.+|+|+|+++++.. .+..+++..+++++||.+.||..|+.. .++++|++++ .+.
T Consensus 298 ~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~-~~~ 371 (387)
T PRK08960 298 RDFLLPALRELGFGIAVEPQGAFYLYADISAFG-----GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYT-QSL 371 (387)
T ss_pred HHHHHHHHHhcCCcCCcCCCeeEEEEEeccccC-----CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEec-CCH
Confidence 999999999988765 46889999999998621 134678888888899999999999753 3579999999 577
Q ss_pred ccHHHHHHHHHHHHH
Q 019899 317 EDIPLVIERIQKVAE 331 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~ 331 (334)
+.+.+++++|.++++
T Consensus 372 ~~l~~al~~l~~~~~ 386 (387)
T PRK08960 372 PRLQEAVERIARGLR 386 (387)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999999888764
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=335.43 Aligned_cols=312 Identities=21% Similarity=0.340 Sum_probs=259.4
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ +.+++++|++|+|+++++..++.+++++||+|++++|+|+.+..... ..|.+++.+++.+++++.+|+
T Consensus 83 a~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~i~~~~~~~~~~d~ 159 (409)
T PLN02656 83 AEYLSRDLP--YKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAA-FRHLEVRYVDLLPEKGWEVDL 159 (409)
T ss_pred HHHHHHhcC--CCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHH-HcCCEEEEEeCCCcCCCCCCH
Confidence 556655444 66889999999999999999999999999999999999999988877 789999999986556788999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ +++++++++|+||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+..
T Consensus 160 ~~l~~~~~~------~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---- 229 (409)
T PLN02656 160 DAVEALADQ------NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGS---- 229 (409)
T ss_pred HHHHHHhcc------CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcc----
Confidence 999998875 7889999999999999999999999999999999999999999999987655555555533
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecC-------HHHHHHHHHhhcc-cCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYN-------ESVLAAAKKLTRF-CSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
..++++++||||.++++|+|+||+++++ +++++.+.+.... .+.+.+.|.++..++.... +.++.+.++
T Consensus 230 -~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~ 306 (409)
T PLN02656 230 -IVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTIN 306 (409)
T ss_pred -cCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHH
Confidence 5689999999999999999999999853 5788888765443 3578899999999997532 456788888
Q ss_pred HHHHHHHHHHHHHHhCC-Cc-ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEe
Q 019899 234 RIKKLYDSFVAGLKQLG-IR-CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCF 311 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~g-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~ 311 (334)
+++++++.+.+.|++++ +. ...|.+|+|+|++++..... ...++.+++..+++++||.+.||+.|+. ++++|+++
T Consensus 307 ~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~ 383 (409)
T PLN02656 307 ILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITF 383 (409)
T ss_pred HHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEe
Confidence 99999999999998873 33 34788999999998742110 0012346666778889999999999974 68999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHc
Q 019899 312 TSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 312 ~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+ .+++++++++++|++++.++
T Consensus 384 ~-~~~e~l~eal~rl~~~~~~~ 404 (409)
T PLN02656 384 A-ADPSSLEEALGRIKSFYLRH 404 (409)
T ss_pred C-CCHHHHHHHHHHHHHHHHHh
Confidence 9 68899999999999998875
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=336.31 Aligned_cols=308 Identities=22% Similarity=0.368 Sum_probs=263.2
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
|+|+.+..+ .++++++|++|+|+++++..++.+++++||+|++++|+|.++...+. ..|.+++.++++.++++.+|+
T Consensus 80 a~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~ 156 (391)
T PRK08361 80 AEYYKKFYG--VDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAK-IAEAKPIRIPLREENEFQPDP 156 (391)
T ss_pred HHHHHHHhC--CCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-HcCCEEEEEecCCccCCCCCH
Confidence 556655555 57889999999999999999999999999999999999999999888 899999999987666778999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++.+++ +++++++++|+||||.++|.+++++|+++|+++++++|+||+|+.+.+++....++....
T Consensus 157 ~~l~~~i~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~----- 225 (391)
T PRK08361 157 DELLELITK------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYA----- 225 (391)
T ss_pred HHHHHhccc------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcC-----
Confidence 999999876 789999999999999999999999999999999999999999999887654444444432
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
.++++++.|+||.+|++|+|+||+++ ++++++.+..... .++.+.+.|.++..++.+.++ .+++.+.++.+++++
T Consensus 226 -~~~~i~~~s~SK~~~~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 302 (391)
T PRK08361 226 -PDNTILANSFSKTFAMTGWRLGFVIA-PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERR 302 (391)
T ss_pred -CCCEEEEecCchhcCCcHhhhhhhcc-CHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHH
Confidence 56889999999999999999999999 7888888766543 357788899999999877543 246788889999999
Q ss_pred HHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 240 DSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 240 ~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
+.+.+.|+++ ++.+..+.+|+++|++++... .++.++...+++++||.+.||..|+...++++|++++ .++++
T Consensus 303 ~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~-----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~ 376 (391)
T PRK08361 303 KLVLKRLKEMPHIKVFEPKGAFYVFANIDETG-----MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA-TSKEK 376 (391)
T ss_pred HHHHHHHHhCCCCeecCCCEEEEEEEECCCCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec-CCHHH
Confidence 9999999987 788888999999999997421 1346888887777999999999997666789999999 67789
Q ss_pred HHHHHHHHHHHHHH
Q 019899 319 IPLVIERIQKVAET 332 (334)
Q Consensus 319 l~~~l~~l~~~~~~ 332 (334)
+++++++|++++++
T Consensus 377 l~~al~~l~~~l~~ 390 (391)
T PRK08361 377 LIEAMERMEKALEE 390 (391)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998875
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=331.85 Aligned_cols=311 Identities=24% Similarity=0.450 Sum_probs=260.3
Q ss_pred hhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++|+.+..+ +.+++ ++|++|+|+++++.+++.+++++||+|++++|+|+++...++ ..|.+++.++.+ ++++.+|
T Consensus 77 a~~~~~~~~--~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~~~~~-~~~~~~d 152 (391)
T PRK07309 77 ADFVKEKYN--LDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVN-LVGAEIVEIDTT-ENDFVLT 152 (391)
T ss_pred HHHHHHHhC--CCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-HcCCEEEEEecC-CcCCcCC
Confidence 455555444 44554 689999999999999999999999999999999999999888 899999999974 3457899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++.++++++.. ..+++++++++|+||||.+++.+++++++++|++|++++|+|++|+++.+++....++....
T Consensus 153 ~~~l~~~~~~~---~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~---- 225 (391)
T PRK07309 153 PEMLEKAILEQ---GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL---- 225 (391)
T ss_pred HHHHHHHhhcc---CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc----
Confidence 99999998642 12589999999999999999999999999999999999999999999998665445555442
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++++++.|+||.+|++|+|+||+++ ++++++.+...... .+.+++.|.++..++++..+ +....+++++++
T Consensus 226 --~~~~i~~~S~SK~~g~~GlRvG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~ 299 (391)
T PRK07309 226 --PDQTILINGLSKSHAMTGWRIGLIFA-PAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD---DALPMKKEYIKR 299 (391)
T ss_pred --cCCEEEEecChhhccCccceeEEEEe-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChh---HHHHHHHHHHHH
Confidence 57899999999999999999999998 78888888765432 45788899999999976432 224567788889
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++++.+.|++.++.+..|.+|+++|+++|.... .++.++++++++++||.+.||..|+...++++|++++ .++++
T Consensus 300 ~~~~~~~l~~~~~~~~~p~gg~~~~~~l~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~ 374 (391)
T PRK07309 300 RDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYN----QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA-ASMET 374 (391)
T ss_pred HHHHHHHHHHCCCeecCCCeeEEEEEECCCCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec-CCHHH
Confidence 999999999989988889999999999886432 1345788887888999999999998766789999998 57789
Q ss_pred HHHHHHHHHHHHHHcC
Q 019899 319 IPLVIERIQKVAETCK 334 (334)
Q Consensus 319 l~~~l~~l~~~~~~~~ 334 (334)
+++++++|++++++++
T Consensus 375 l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 375 IKEAMKRLKEYMEEHA 390 (391)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-46 Score=334.20 Aligned_cols=307 Identities=21% Similarity=0.400 Sum_probs=252.0
Q ss_pred ChhhhhhhhcCCCC-CCCC-cEEEecCcHHHHHHHHHHhcCC---CCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCC
Q 019899 1 MAGFMSQVLGQAVS-FDPS-QIVLTAGATPAVEILCFCLADH---GNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD 75 (334)
Q Consensus 1 i~~~~~~~~~~~~~-~~~~-~i~~~~g~~~~~~~~~~~l~~~---gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~ 75 (334)
||+|+.++.+ +. ++++ +|++|+|+++++..++.+++++ ||.|++++|+|+.+...++ ..|.+++.+|++.++
T Consensus 74 ia~~~~~~~g--~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~-~~g~~~~~vp~~~~~ 150 (396)
T PRK09147 74 IAAWLERRYG--LPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAAL-LAGAEPYFLNCDPAN 150 (396)
T ss_pred HHHHHHHHhC--CCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHH-hcCCEEEEeccCccc
Confidence 3566665545 55 7775 8999999999999999999999 8999999999999999988 899999999997667
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC-Ccchhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAE 154 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~-~~~~~~~ 154 (334)
++.+|++.+++.+.+ +++++++++|+||||.++|.+++++|+++|++|+++||+||+|.++.|++. ...+...
T Consensus 151 ~~~~d~~~l~~~~~~------~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 224 (396)
T PRK09147 151 NFAPDFDAVPAEVWA------RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLE 224 (396)
T ss_pred cCccCHHHHHHHHhh------ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhh
Confidence 789999999988765 789999999999999999999999999999999999999999999988653 1212111
Q ss_pred hhhccc-cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHH
Q 019899 155 ILEAEE-VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETN 231 (334)
Q Consensus 155 ~~~~~~-~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (334)
.....+ .+.+++++++||||.++++|+|+||+++ ++++++.+.+... .++.+++.|.++...+.. .+++.+.
T Consensus 225 ~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~ 299 (396)
T PRK09147 225 AAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAG-DAALLKKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVREN 299 (396)
T ss_pred hccccCccccccEEEEeccccccCCccceeeeecC-CHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHH
Confidence 110000 0147899999999999999999999998 7888888876554 346788888887777654 3456778
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC------CCCC
Q 019899 232 KRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC------IEPG 305 (334)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~------~~~~ 305 (334)
++.++++++.+.+.|++. +.+..|.+|+|+|+++|. +..+++..+++++||.+.||..|+. ..++
T Consensus 300 ~~~~~~~~~~~~~~L~~~-~~~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~ 370 (396)
T PRK09147 300 RALYREKFDAVTPILAPV-LDVQLPDAGFYLWAKVPG--------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAG 370 (396)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCCCCeeEEEEEECCC--------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCC
Confidence 888999999999999875 666778999999999981 2367888888889999999998863 1257
Q ss_pred eEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 306 WFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 306 ~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
++|++++ .+++++++++++|+++++
T Consensus 371 ~iRi~~~-~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 371 RVRIALV-APLAECVEAAERIVDFCR 395 (396)
T ss_pred eEEEEec-CCHHHHHHHHHHHHHHhc
Confidence 9999999 578899999999998874
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-46 Score=335.60 Aligned_cols=304 Identities=24% Similarity=0.438 Sum_probs=256.2
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
..+++++|++|+|+++++..++.+++++||+|+++.|+|+.+...++ ..|.+++.+++.+++++.+|++++++++++
T Consensus 100 ~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-- 176 (412)
T PTZ00433 100 STIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCK-AYGIEMRFYNCRPEKDWEADLDEIRRLVDD-- 176 (412)
T ss_pred CCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHH-HcCCEEEEEecCccccCcCCHHHHHHHhcc--
Confidence 45789999999999999999999999999999999999999999988 899999999986666789999999988875
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
+++++++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+.. ..++++++||
T Consensus 177 ----~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~~~i~~~Sf 247 (412)
T PTZ00433 177 ----RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDT-----TVPRVILGGT 247 (412)
T ss_pred ----CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccC-----CCceEEEccc
Confidence 7899999999999999999999999999999999999999999999887654455555543 3457899999
Q ss_pred cccCCCCCceEEEEeecC-----HHHHHHHHHhhc-ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 173 SKDLSLPGFRTGVIYSYN-----ESVLAAAKKLTR-FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (334)
||.+|++|+|+||+++.+ +++++.+..... .++.+++.|.++..++... .+.++.+.++.++++++.+.+.|
T Consensus 248 SK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~L 325 (412)
T PTZ00433 248 AKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT--PQEHLEQIVAKLEEGAMVLYNHI 325 (412)
T ss_pred hhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999722 456777766544 3578999999999888753 25667888889999999999999
Q ss_pred HhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHH
Q 019899 247 KQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIER 325 (334)
Q Consensus 247 ~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~ 325 (334)
++. ++.+..|.+|+|+|++++...-. ...++.+++..|++++||.+.||..|+. ++++|++++ ..++++++++++
T Consensus 326 ~~~~~~~~~~p~gg~f~~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~-~~~e~l~~al~~ 401 (412)
T PTZ00433 326 GECIGLSPTMPRGSMFLMSRLDLEKFR-DIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTIS-RPVEVLREAVER 401 (412)
T ss_pred hcCCCCcccCCCeeEEEEEEechhhcC-CCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEec-CCHHHHHHHHHH
Confidence 885 78878899999999998742100 0012468889988778999999999864 689999998 568899999999
Q ss_pred HHHHHHHcC
Q 019899 326 IQKVAETCK 334 (334)
Q Consensus 326 l~~~~~~~~ 334 (334)
|.+++++++
T Consensus 402 l~~~~~~~~ 410 (412)
T PTZ00433 402 IKAFCERHK 410 (412)
T ss_pred HHHHHHHhc
Confidence 999998764
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-46 Score=334.13 Aligned_cols=310 Identities=22% Similarity=0.346 Sum_probs=258.6
Q ss_pred ChhhhhhhhcCCCC-CCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc
Q 019899 1 MAGFMSQVLGQAVS-FDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 1 i~~~~~~~~~~~~~-~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 78 (334)
+|+|+.++.+ +. ++++ +|++|+|+++++..++.+++++||.|+++.|+|+.+...++ ..|.+++.+++++++++.
T Consensus 90 ia~~~~~~~g--~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-~~g~~v~~v~~~~~~~~~ 166 (410)
T PRK06290 90 AARYMEKVFG--VKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTK-YYGGEVYNLPLLEENNFL 166 (410)
T ss_pred HHHHHHHHcC--CCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHH-HcCCEEEEEecCCCcCCc
Confidence 3566665545 55 7786 79999999999999999999999999999999999999998 899999999997666788
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|++++++.+++ +++++++++|+||||.++|.+++++|+++|++|+++||+||+|+++.+++. ..++..+..
T Consensus 167 ~d~~~l~~~~~~------~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~- 238 (410)
T PRK06290 167 PDLDSIPKDIKE------KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPG- 238 (410)
T ss_pred CCHHHHHHhhcc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCC-
Confidence 899999988865 789999999999999999999999999999999999999999999887542 334444432
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
..+++++++||||.+|++|+|+||+++ ++++++.+......+ +.+.+.|.++..++...+ +..+.++.++
T Consensus 239 ---~~~~~I~i~SfSK~~g~~GlRiG~ii~-~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~----~~~~~~~~~~ 310 (410)
T PRK06290 239 ---AKEVGVEIHSLSKAYNMTGWRLAFVVG-NELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPE----ITEKIREKYS 310 (410)
T ss_pred ---ccccEEEEeechhhcCCchhheEeEEe-CHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcH----HHHHHHHHHH
Confidence 146789999999999999999999998 888988888765543 445688888888887643 4567788899
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC-CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS-YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-- 313 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-- 313 (334)
++++.+.+.|++.|+.+..+.+|+++|+++|..... ....++.++++.|+++.++.+.||..|+ +++||+++.
T Consensus 311 ~~~~~l~~~L~~~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~ 386 (410)
T PRK06290 311 RRLDKLVKILNEVGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEA 386 (410)
T ss_pred HHHHHHHHHHHhCCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEccc
Confidence 999999999999999888899999999999864321 1113567899998887778888987653 699999984
Q ss_pred CCcccHHHHHHHHHHHHHHc
Q 019899 314 LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~~ 333 (334)
.++++.+++++.|++.+.+.
T Consensus 387 ~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 387 KDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred ccccchhHHHHHHHHHHhhc
Confidence 48899999999999998774
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=334.25 Aligned_cols=314 Identities=22% Similarity=0.385 Sum_probs=264.5
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++++.+..+ ..+++++|++|+|+++|+..++.+++++||+|++++|+|+.|...+. ..+..++.+++..++++.+|+
T Consensus 80 a~~l~~~~g--~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~-~~~~~~~~v~~~~~~~~~~~~ 156 (402)
T PRK06107 80 IAKLERRNG--LHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVL-ANDGTPVIVACPEEQGFKLTP 156 (402)
T ss_pred HHHHHHhcC--CCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHH-HcCCEEEEecCCcccCCCCCH
Confidence 556666555 66788999999999999999999999999999999999999988877 778888888876556778999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc-CcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK-NIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++.++. +++++++++|+||||.++|.+++++++++|+++ ++++|+||+|+.+.|.+..+.++..+.+ +
T Consensus 157 ~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~--~ 228 (402)
T PRK06107 157 EALEAAITP------RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAP--E 228 (402)
T ss_pred HHHHhhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCc--C
Confidence 999998865 788999999999999999999999999999998 9999999999999887655556665533 1
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
. .+++++++||||.++++|+|+||+++ ++++++.+..... .++.+.+.|.++..++... ..++++.++.++++
T Consensus 229 ~-~~~vi~~~S~SK~~~~pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~ 303 (402)
T PRK06107 229 L-RDRVLVTNGVSKTYAMTGWRIGYAAG-PADLIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQR 303 (402)
T ss_pred c-cCCEEEEeccchhhcCcccceeeeec-CHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHH
Confidence 1 46899999999999999999999998 8889998887664 3578999999999999753 35677888899999
Q ss_pred HHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCC---C--ChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec
Q 019899 239 YDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPS---Y--SEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT 312 (334)
Q Consensus 239 ~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~---~--~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~ 312 (334)
++.+.+.|+++ |+.+..+++|+++|++++..... . ...+..+++..+++++||.+.||..|+. ++++|++++
T Consensus 304 ~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~ 381 (402)
T PRK06107 304 RDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIA 381 (402)
T ss_pred HHHHHHHHhcCCCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeC
Confidence 99999999887 78888899999999998642111 0 0124457888888889999999999975 679999999
Q ss_pred CCCcccHHHHHHHHHHHHHHcC
Q 019899 313 SLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 313 ~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
.+++++++++++|.+++++.+
T Consensus 382 -~~~e~l~~~l~~l~~~l~~~~ 402 (402)
T PRK06107 382 -TSLETLEEACARIERAVAALR 402 (402)
T ss_pred -CCHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999998753
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=332.89 Aligned_cols=309 Identities=23% Similarity=0.405 Sum_probs=258.9
Q ss_pred hhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++|+.+..+ +.++++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.+++++ +++.+|
T Consensus 73 a~~~~~~~g--~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~-~~~~~~ 148 (387)
T PRK08912 73 AAHYARFQG--LDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIR-RAGGVPRLVRLEP-PHWRLP 148 (387)
T ss_pred HHHHHHHhC--CCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-HcCCEEEEEecCc-ccCcCC
Confidence 556665555 667888 99999999999999999999999999999999999999998 9999999999853 457899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++.+++ +++++++++|+||||.++|.+++++|+++|++|++++|+||+|+++.+++....++..+.+
T Consensus 149 ~~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--- 219 (387)
T PRK08912 149 RAALAAAFSP------RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPG--- 219 (387)
T ss_pred HHHHHHHhCc------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCC---
Confidence 9999998875 7899999999999999999999999999999999999999999998886644445444322
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
. .+++++++|+||.+|++|+|+||+++ ++++++.+...... ++.++..|.++..++... ++++++.+++++++
T Consensus 220 ~-~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~ 294 (387)
T PRK08912 220 M-RERTVKIGSAGKIFSLTGWKVGFVCA-APPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARS 294 (387)
T ss_pred c-cCceEEEeechhhccCcCceeEEEec-CHHHHHHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 1 46899999999999999999999998 88888888766543 566777788887777542 34557788899999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEEEEecCCCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFRCCFTSLTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iRi~~~~~~~ 316 (334)
++.+.+.|++.|+++..+.+++|+|++++.... ..++.++++.+++++||.+.||..|+.. ..+++|++++ .++
T Consensus 295 ~~~l~~~L~~~g~~~~~~~g~~~l~~~l~~~~~---~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~-~~~ 370 (387)
T PRK08912 295 RDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGL---AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA-KRD 370 (387)
T ss_pred HHHHHHHHHhCCCcccCCCcceEEEecccccCC---CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe-CCH
Confidence 999999999999988888999999999986211 1134678899888899999999988543 3589999999 568
Q ss_pred ccHHHHHHHHHHHHHH
Q 019899 317 EDIPLVIERIQKVAET 332 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~ 332 (334)
+++++++++|++++++
T Consensus 371 ~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 371 ATLDEAVERLAAARRR 386 (387)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=332.35 Aligned_cols=303 Identities=18% Similarity=0.307 Sum_probs=251.8
Q ss_pred hhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++|+.+..+ ..+++ ++|++|+|+++++..++++++++||+|+++.|+|..+...++ ..|.+++.+++++ +++.+|
T Consensus 76 a~~l~~~~g--~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~-~~~~~d 151 (384)
T PRK12414 76 AEKTERLYG--ARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVR-LQGATPVAIKLSP-EDFRVN 151 (384)
T ss_pred HHHHHHHhC--CCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-HcCCEEEEEecCc-cccccC
Confidence 455555445 44444 689999999999999999999999999999999999998888 8899999999853 457899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++.++++++. +++++++++|+||||.+++.+++++|+++|++|++++|+||+|+++.|++....++..+..
T Consensus 152 ~~~l~~~l~~------~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~--- 222 (384)
T PRK12414 152 WDEVAAAITP------RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRE--- 222 (384)
T ss_pred HHHHHhhcCc------ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcC---
Confidence 9999998875 7899999999999999999999999999999999999999999999887644434433321
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
. .++++++.||||.+|++|+|+||+++ ++++++.+.+... .++.+.+.|.++..++...++ ..+.++.++++
T Consensus 223 ~-~~~~i~~~SfSK~~~~pGlRiG~~v~-~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~ 296 (384)
T PRK12414 223 L-AERSVIVSSFGKSYHVTGWRVGYCLA-PAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRK 296 (384)
T ss_pred c-cCcEEEEecccccccCccceEEEEec-CHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHH
Confidence 1 46899999999999999999999998 7888888877653 467889999999999977543 23467788999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC--CCeEEEEecCCCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE--PGWFRCCFTSLTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~--~~~iRi~~~~~~~ 316 (334)
++.+.+.|++.|+.+..+.+|+|+|+++++... .++.+++..+++++||.+.||..|+... .+++|++++ .++
T Consensus 297 r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~~~----~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~-~~~ 371 (384)
T PRK12414 297 RDLLARELAGSRFELLPSEGSFFMLARFRHFSD----ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS-KDD 371 (384)
T ss_pred HHHHHHHHHhCCCeecCCCcceEEEEcccccCC----CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec-CCH
Confidence 999999999999888889999999999875321 1235777777888999999999886432 579999999 578
Q ss_pred ccHHHHHHHHHH
Q 019899 317 EDIPLVIERIQK 328 (334)
Q Consensus 317 ~~l~~~l~~l~~ 328 (334)
+++++++++|++
T Consensus 372 ~~~~~~~~rl~~ 383 (384)
T PRK12414 372 ATLVEGARRLCS 383 (384)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=330.43 Aligned_cols=307 Identities=23% Similarity=0.364 Sum_probs=254.8
Q ss_pred hhhhhhhhcCCCCCC-CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFD-PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++++.+.++ +.++ +++|++|+|+++++..++..++++||+|++++|+|..+...++ ..|.+++.++. ++++.+|
T Consensus 75 ~~~l~~~~g--~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~--~~~~~~d 149 (389)
T PRK05957 75 TQKLQQDNG--IELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAIT-MAGCQPILVPT--DDNYQLQ 149 (389)
T ss_pred HHHHHHHhC--CCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHH-hcCCEEEEeec--CCCCCcC
Confidence 455555445 5555 6789999999999999999999999999999999999988877 88999999997 4567899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+++.+++....+...+..
T Consensus 150 ~~~l~~~i~~------~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~--- 220 (389)
T PRK05957 150 PEAIEQAITP------KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPG--- 220 (389)
T ss_pred HHHHHHhcCc------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCC---
Confidence 9999999875 7899999999999999999999999999999999999999999999886543333333322
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..++++++.||||.+|++|+|+||+++ ++++++.+...... .+.+.+.|.++..++.... .++++.++.++++
T Consensus 221 -~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~ 295 (389)
T PRK05957 221 -SGNHTISLYSLSKAYGFASWRIGYMVI-PIHLLEAIKKIQDTILICPPVVSQYAALGALQVGK---SYCQQHLPEIAQV 295 (389)
T ss_pred -ccCcEEEEecchhhccCccceeEEEec-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh---HHHHHHHHHHHHH
Confidence 156899999999999999999999998 78999999876654 3567789999888887632 2345555668899
Q ss_pred HHHHHHHHHhC-C-CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 239 YDSFVAGLKQL-G-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~-g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
++.+.+.|++. + +.+..+.+|+|+|++++... ++.++++++++++||.+.||+.|+...++++|++++..++
T Consensus 296 r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~ 369 (389)
T PRK05957 296 RQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDL------NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQK 369 (389)
T ss_pred HHHHHHHHHhcCCCccccCCCeeEEEEEeCCCCC------ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCH
Confidence 99999999886 4 36667888999999997543 3468999988889999999999976556799999986688
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+++++++++|.+.++++
T Consensus 370 ~~l~~~~~~l~~~~~~~ 386 (389)
T PRK05957 370 ATAKEGIERLVQGLKTI 386 (389)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988753
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=331.48 Aligned_cols=307 Identities=21% Similarity=0.434 Sum_probs=259.0
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCC-CCcccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST-DNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~~ 80 (334)
++|+.+..+ ..+++++|++|+|+++++..++..++++||.|++++|+|+.+...++ ..|.+++.+|++.+ +++.+|
T Consensus 71 a~~~~~~~~--~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d 147 (382)
T PRK06108 71 ARYVSRLHG--VATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPK-ILGARVVCVPLDFGGGGWTLD 147 (382)
T ss_pred HHHHHHHhC--CCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-HCCCEEEEeeCCCCCCCccCC
Confidence 556665545 56889999999999999999999999999999999999999999888 89999999998642 457799
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC-CCCcchhhhhhhcc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG-NEEFVSMAEILEAE 159 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~-~~~~~~~~~~~~~~ 159 (334)
++++++.+++ +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.++ +....++..+..
T Consensus 148 ~~~l~~~~~~------~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-- 219 (382)
T PRK06108 148 LDRLLAAITP------RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE-- 219 (382)
T ss_pred HHHHHHhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC--
Confidence 9999998865 7889999999999999999999999999999999999999999999886 333334333332
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..++++++.|+||.+|++|+|+||+++ ++++++.+..... ..+.+++.|.++..++... .+++.+.++++++
T Consensus 220 --~~~~~i~~~S~SK~~g~~G~RiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~ 293 (382)
T PRK06108 220 --PDDRIIFVNSFSKNWAMTGWRLGWLVA-PPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRR 293 (382)
T ss_pred --CcCCEEEEeechhhccCcccceeeeeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHH
Confidence 146899999999999999999999998 7888888876543 3457888999888888764 3455777888999
Q ss_pred HHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 238 LYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 238 ~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
+++.+.+.|++. ++++..|.+|+++|++++... +..+++..|++++||.+.||..|+...++++|++++. ++
T Consensus 294 ~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~~------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~ 366 (382)
T PRK06108 294 SRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVT------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DP 366 (382)
T ss_pred HHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CH
Confidence 999999999887 788888899999999998642 3468889988889999999998876557899999995 89
Q ss_pred ccHHHHHHHHHHHHHH
Q 019899 317 EDIPLVIERIQKVAET 332 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~ 332 (334)
+++++++++|++++++
T Consensus 367 ~~l~~~l~~l~~~l~~ 382 (382)
T PRK06108 367 ARLDEAVERLRRFLAR 382 (382)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998753
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=332.47 Aligned_cols=303 Identities=24% Similarity=0.403 Sum_probs=253.9
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++ ..|.+++.+++..++++++|++.+++++++
T Consensus 91 ~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~-~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~-- 167 (401)
T TIGR01264 91 GPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAE-SMGIEVKLYNLLPDKSWEIDLKQLESLIDE-- 167 (401)
T ss_pred CCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHH-HcCCEEEEeecCCccCCCCCHHHHHHHhcc--
Confidence 34788999999999999999999999999999999999999999888 899999999986556789999999988875
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
+++++++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.++..+.+ ..++++++||
T Consensus 168 ----~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~~vi~~~Sf 238 (401)
T TIGR01264 168 ----KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSS-----TVPILSCGGL 238 (401)
T ss_pred ----CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCC-----CCcEEEEccC
Confidence 6789999999999999999999999999999999999999999999987655556665543 3468999999
Q ss_pred cccCCCCCceEEEEeecCH-----HHHHHHHHhhc-ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 173 SKDLSLPGFRTGVIYSYNE-----SVLAAAKKLTR-FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (334)
||.++++|+|+||++++++ ++++.+..... .++.+++.|.++..++... .++++.+.++.++++++.+.+.|
T Consensus 239 SK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~r~~l~~~L 316 (401)
T TIGR01264 239 AKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRT--PQEYFDGTLSVLESNAMLCYGAL 316 (401)
T ss_pred cccCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998542 34444544433 4567889999999998652 25677888899999999999999
Q ss_pred HhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHH
Q 019899 247 KQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIER 325 (334)
Q Consensus 247 ~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~ 325 (334)
+++ |+.+..|.+|+|+|++++...-. ...+..+++..+++++||.+.||..|+. ++++|++++ .+++++++++++
T Consensus 317 ~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gI~v~pg~~f~~--~~~iRis~~-~~~~~l~~~l~r 392 (401)
T TIGR01264 317 AAVPGLRPVMPSGAMYMMVGIEMEHFP-EFKNDVEFTERLVAEQSVFCLPGSCFEY--PGFFRVVLT-VPVVMMEEACSR 392 (401)
T ss_pred HhCCCCcccCCCeeeEEEEEecccccC-CCCCHHHHHHHHHHhCCEEEeCchhcCC--CCeEEEEEc-CCHHHHHHHHHH
Confidence 988 77777889999999998642000 0013467888877789999999998863 689999999 578899999999
Q ss_pred HHHHHHHc
Q 019899 326 IQKVAETC 333 (334)
Q Consensus 326 l~~~~~~~ 333 (334)
|.++++++
T Consensus 393 l~~~~~~~ 400 (401)
T TIGR01264 393 IQEFCERH 400 (401)
T ss_pred HHHHHhcc
Confidence 99999875
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=327.77 Aligned_cols=292 Identities=20% Similarity=0.276 Sum_probs=252.7
Q ss_pred CCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 14 ~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
++++++|++|+|+++++.+++.+++++||+|+++.|+|+.+...++ ..|.+++.+|+.+++++.+|++++++++++
T Consensus 77 ~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~--- 152 (373)
T PRK07324 77 NVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPE-SLGAEVDYWQLKEENGWLPDLDELRRLVRP--- 152 (373)
T ss_pred CCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-HcCCEEEEEecccccCCCCCHHHHHHhCCC---
Confidence 3678999999999999999999999999999999999999998888 899999999997667788999999988865
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
+++++++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++. ..++... .++++++.|+|
T Consensus 153 ---~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~-------~~~~I~~~s~S 221 (373)
T PRK07324 153 ---NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADL-------YEKGISTNSMS 221 (373)
T ss_pred ---CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhc-------cCCEEEEecch
Confidence 789999999999999999999999999999999999999999999887543 3333332 46789999999
Q ss_pred ccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 019899 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-G 250 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g 250 (334)
|.+|++|+|+||+++ ++++++.+.+.... .+.+.+.|.++..++... +.++.+.++.++++++.+.+.|++. +
T Consensus 222 K~~~~~G~RiG~i~~-~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~~l~~~~~ 297 (373)
T PRK07324 222 KTYSLPGIRVGWIAA-NEEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDEWVAKEPR 297 (373)
T ss_pred hhcCCccceeEEEec-CHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999998 88999999877653 467788888888887642 4566778888899999999999876 6
Q ss_pred CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 251 IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 251 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
+.+..|.+|+++|+.++... +..+++.++++++||.+.||..|+. ++++|++++ .+++.+++++++|++++
T Consensus 298 ~~~~~p~gg~~~~i~~~~~~------~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~-~~~~~l~~~l~rl~~~l 368 (373)
T PRK07324 298 VSYVKPKAVSTSFVKLDVDM------PSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYC-CDTETLKKGLKKLSEFL 368 (373)
T ss_pred ceEECCCceEEEEEEeCCCC------CHHHHHHHHHHhcCEEEECccccCC--CCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 77788899998888887532 3468999988889999999999974 679999998 67899999999999999
Q ss_pred HHc
Q 019899 331 ETC 333 (334)
Q Consensus 331 ~~~ 333 (334)
+++
T Consensus 369 ~~~ 371 (373)
T PRK07324 369 REF 371 (373)
T ss_pred Hhc
Confidence 875
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=331.63 Aligned_cols=304 Identities=21% Similarity=0.319 Sum_probs=257.4
Q ss_pred hhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++++.+..+ ...+++ +|++|+|+++++..++.+++++||+|+++.|+|+.+...++ ..|.+++.++++. +++.+|
T Consensus 77 a~~l~~~~~--~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-~~g~~~~~~~~~~-~~~~~d 152 (386)
T PRK09082 77 AAKTARLYG--RQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIE-LAGGRAVRVALQP-PDFRVD 152 (386)
T ss_pred HHHHHHHhC--CCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHH-HcCCEEEEEecCc-ccccCC
Confidence 456665555 445555 79999999999999999999999999999999999999998 8899999999853 467899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++.+++ +++++++++|+||||.+++.+++++|+++|++|++++|+|++|+.+.+++....++..+..
T Consensus 153 ~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~--- 223 (386)
T PRK09082 153 WQRFAAAISP------RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPE--- 223 (386)
T ss_pred HHHHHHhcCc------cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcC---
Confidence 9999999875 7899999999999999999999999999999999999999999999887655555555432
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..+++++++||||.+|++|+|+||+++ ++++++.+++.. ..++.+.+.|.++..++... ++++.++++.++++
T Consensus 224 -~~~~~i~~~S~SK~~~~~G~RiG~iv~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~ 298 (386)
T PRK09082 224 -LRERAFVVSSFGKTYHVTGWKVGYCVA-PAALSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAK 298 (386)
T ss_pred -ccCcEEEEeechhhccchhhhhhhhhC-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHH
Confidence 157899999999999999999999998 789988888765 34678999999999998642 34567788899999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC--CCCCeEEEEecCCCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC--IEPGWFRCCFTSLTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~~iRi~~~~~~~ 316 (334)
++.+.+.|++.++++..+++|+|+|+++|+... .+..+++..|++++||.+.||+.|+. ...+++|++++ .++
T Consensus 299 ~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~-~~~ 373 (386)
T PRK09082 299 RDRFRAALANSRFKLLPCEGTYFQLVDYSAISD----LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA-KQE 373 (386)
T ss_pred HHHHHHHHHhCCCcccCCCeeEEEEEeccccCC----CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec-CCH
Confidence 999999999989998889999999999985311 23468889888889999999998853 23579999999 578
Q ss_pred ccHHHHHHHHHH
Q 019899 317 EDIPLVIERIQK 328 (334)
Q Consensus 317 ~~l~~~l~~l~~ 328 (334)
+++++++++|++
T Consensus 374 ~~l~~~~~rl~~ 385 (386)
T PRK09082 374 ETLDAAAERLCQ 385 (386)
T ss_pred HHHHHHHHHHhh
Confidence 899999998875
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=329.91 Aligned_cols=312 Identities=27% Similarity=0.461 Sum_probs=258.4
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+....+ +.+++++|++|+|+++++..++.+++++||+|+++.|+|+.+...+. ..|.+++.+++.+++++.+|+
T Consensus 83 a~~l~~~~~--~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~ 159 (403)
T TIGR01265 83 AEYLSSDLP--GKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAA-FSGLEVRLYDLLPEKDWEIDL 159 (403)
T ss_pred HHHHHhhcC--CCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-HcCCEEEEecCCcccCCccCH
Confidence 344443333 55678899999999999999999999999999999999999988888 889999999886556778999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+.+++++++ +++++++++|+||||.++|.+++++|+++|+++|+++|+|++|+++.+++..+.++..+.+
T Consensus 160 ~~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---- 229 (403)
T TIGR01265 160 DGLEALADE------KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFAS---- 229 (403)
T ss_pred HHHHHHhCc------CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhcc----
Confidence 999998865 7889999999999999999999999999999999999999999999987655556666544
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCH-H-----HHHHHHHhhc-ccCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNE-S-----VLAAAKKLTR-FCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~-~-----~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
..++++++||||.++++|+|+||++++++ . +.+.+..... ..+.+.+.|.++..++.... +.++.+.+++
T Consensus 230 -~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~ 306 (403)
T TIGR01265 230 -IVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISV 306 (403)
T ss_pred -CCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 45799999999999899999999998443 2 3444444432 35678899999999986532 5677888889
Q ss_pred HHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 235 IKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
+.++++.+.+.|+.+ |+.+..|.+|+|+|++++..... ...++.+++..+++++||.+.||..|+. ++++|++++
T Consensus 307 ~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~pg~~f~~--~~~iRis~~- 382 (403)
T TIGR01265 307 LKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFP-EIKDDVDFCEKLVREESVICLPGSAFGL--PNWVRITIT- 382 (403)
T ss_pred HHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEec-
Confidence 999999999999887 77777889999999999754210 0113468888888889999999999863 789999999
Q ss_pred CCcccHHHHHHHHHHHHHHc
Q 019899 314 LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++++++++++|++++++|
T Consensus 383 ~~~~~l~~~l~~l~~~~~~~ 402 (403)
T TIGR01265 383 VPESMLEEACSRIKEFCERH 402 (403)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 66789999999999999876
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=324.18 Aligned_cols=298 Identities=24% Similarity=0.386 Sum_probs=250.4
Q ss_pred hhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCC---CeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHG---NALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~g---d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
++|+.+..+ ++++++ +|++|+|+++++..++.+++++| |+|+++.|+|+.+...++ ..|.+++.+++.+++++
T Consensus 46 a~~~~~~~g--~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~ 122 (350)
T TIGR03537 46 SGWFERRFG--VKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGAL-FAGGEPTAVKLKKEDGF 122 (350)
T ss_pred HHHHHHHhC--CCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHH-hcCCEEEEcccCcccCC
Confidence 556665555 778888 99999999999999999999877 699999999999999999 99999999998656678
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
++|++++++++++ +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.+++ ...++...
T Consensus 123 ~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~-- 193 (350)
T TIGR03537 123 LLRLEKVEKSILE------ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEV-- 193 (350)
T ss_pred ccCHHHHHHhhhh------ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhc--
Confidence 8999999999876 78999999999999999999999999999999999999999999887754 33333332
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
+.++++++.|+||.+|++|+|+||+++ ++++.+.++.....++ .+...|.++..++... ++..+.++++
T Consensus 194 ----~~~~~i~~~s~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~r~~l 264 (350)
T TIGR03537 194 ----GIENVLAFHSLSKRSGMTGYRSGFVAG-DEKLISFLRKLRANFGVASPDFVQAAAKAAWSDD----NHVLERRKIF 264 (350)
T ss_pred ----CcCCEEEEeecccccCCccccceeeec-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCc----HHHHHHHHHH
Confidence 256899999999999999999999997 8889888887655443 3445777776666543 3456678889
Q ss_pred HHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++++.+.+.|++.|+++..+.+|+++|+++|... ++.++++.|++ +||.+.||..|+...++++|++++ .+
T Consensus 265 ~~~~~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~~------~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~-~~ 336 (350)
T TIGR03537 265 KRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSGI------DAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALV-PT 336 (350)
T ss_pred HHHHHHHHHHHHHCCCcccCCCeEEEEEEECCCCC------CHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEec-CC
Confidence 99999999999999998888899999999998642 23678888665 799999999997655789999997 67
Q ss_pred cccHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQK 328 (334)
Q Consensus 316 ~~~l~~~l~~l~~ 328 (334)
++++++++++|++
T Consensus 337 ~~~~~~~l~~~~~ 349 (350)
T TIGR03537 337 LEECEEALRLWER 349 (350)
T ss_pred HHHHHHHHHHHhc
Confidence 8899999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=326.50 Aligned_cols=308 Identities=24% Similarity=0.467 Sum_probs=259.1
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+|+|+.+..+ +.++++ +|++|+|+++++.+++.+++++||+|++++|+|+.+...++ ..|++++.++.+ ++++.+
T Consensus 74 ia~~l~~~~g--~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~-~~~~~~ 149 (387)
T PRK07683 74 ACNFVKDKYD--LHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIR-LCGAKPVFIDTR-STGFRL 149 (387)
T ss_pred HHHHHHHHhC--CCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHH-HcCCEEEEeecC-cccCCC
Confidence 3566665555 667888 99999999999999999999999999999999999999988 899999999975 356778
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|.+++++.+++ +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ..++.+...
T Consensus 150 ~~~~l~~~~~~------~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~-- 220 (387)
T PRK07683 150 TAEALENAITE------KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPE-- 220 (387)
T ss_pred CHHHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccC--
Confidence 88999998875 789999999999999999999999999999999999999999999887543 334444321
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..+++++++|+||.+|++|+|+||+++ ++++++.+...... .+.+.+.|.++..++...+ .+.++.++++++
T Consensus 221 --~~~~vi~~~s~SK~~~~pGlRiG~i~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~ 294 (387)
T PRK07683 221 --MREKTIVINGLSKSHSMTGWRIGFLFA-PSYLAKHILKVHQYNVTCASSISQYAALEALTAGK---DDAKMMRHQYKK 294 (387)
T ss_pred --CcCCeEEEeeccccccCccceeEEEEc-CHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCCh---HHHHHHHHHHHH
Confidence 157899999999999999999999998 88888888765432 3457788999998987643 345677888999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|++.++.+..+.+|+|+|+.++... .++.+++..+++++||.+.||..|+...++++||+++ .+++
T Consensus 295 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~-~~~~ 368 (387)
T PRK07683 295 RRDYVYNRLISMGLDVEKPTGAFYLFPSIGHFT-----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA-YSIE 368 (387)
T ss_pred HHHHHHHHHHHcCCcccCCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec-CCHH
Confidence 999999999988888888999999999887521 1235788787888999999999997656789999999 5888
Q ss_pred cHHHHHHHHHHHHHHc
Q 019899 318 DIPLVIERIQKVAETC 333 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~ 333 (334)
++.+++++|.+++++.
T Consensus 369 ~~~~al~~l~~~l~~~ 384 (387)
T PRK07683 369 TLKEGLDRLEAFLQQK 384 (387)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988653
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=327.86 Aligned_cols=307 Identities=21% Similarity=0.398 Sum_probs=249.9
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCe--EEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNA--LLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~--vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
+|+|+.++.+...+++++ +|++|+|+++++..++.+++++||. |++++|+|+.+...++ ..|.+++.+++.+++++
T Consensus 73 ia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~ 151 (393)
T TIGR03538 73 IARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAAL-LAGAEPYFLNCTAENGF 151 (393)
T ss_pred HHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHH-hcCCeEEEeeccccCCC
Confidence 356776655522236775 7999999999999999999999986 9999999999999888 89999999999766778
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC-Ccchhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~-~~~~~~~~~ 156 (334)
.+|++++++++.+ +++++++++|+||||.+++.+++++|+++|++|+++||+||+|..+.+.+. ...+.....
T Consensus 152 ~~d~~~l~~~~~~------~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~ 225 (393)
T TIGR03538 152 LPDFDAVPESVWR------RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAA 225 (393)
T ss_pred CCCHHHHHHHHhh------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhc
Confidence 8999999998875 789999999999999999999999999999999999999999999887542 222222111
Q ss_pred hccc-cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 157 EAEE-VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 157 ~~~~-~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
...+ ...++++++.||||.++++|+|+||+++ ++++++.+.+... .++.+++.|.++...+.. ++++.+.++
T Consensus 226 ~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~ 300 (393)
T TIGR03538 226 AQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAG-DAEILKAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRA 300 (393)
T ss_pred ccccccccccEEEEecchhhcCCcccceEEEec-CHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHH
Confidence 1000 1257899999999999899999999998 7888888876654 346778888887777754 345677888
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC------CCCCeE
Q 019899 234 RIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC------IEPGWF 307 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~------~~~~~i 307 (334)
.++++++.+.+.|++. +.+..|.+|+|+|+++|. +..++...+++++||.+.||+.|+. ...+++
T Consensus 301 ~~~~~~~~~~~~L~~~-~~~~~p~gg~f~~~~~~~--------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~ 371 (393)
T TIGR03538 301 LYREKFAAVLEILGQV-LDLELPDAGFYLWPKVPG--------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRV 371 (393)
T ss_pred HHHHHHHHHHHHHHhh-CcccCCCeeEEEEEECCC--------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEE
Confidence 8999999999999875 556678999999999981 2357888878889999999998853 135799
Q ss_pred EEEecCCCcccHHHHHHHHHHH
Q 019899 308 RCCFTSLTHEDIPLVIERIQKV 329 (334)
Q Consensus 308 Ri~~~~~~~~~l~~~l~~l~~~ 329 (334)
||+++ .+++++++++++|+++
T Consensus 372 Ris~~-~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 372 RIALV-APLEECVEAAERIRSF 392 (393)
T ss_pred EEEec-CCHHHHHHHHHHHHHh
Confidence 99998 5789999999999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=328.40 Aligned_cols=308 Identities=23% Similarity=0.426 Sum_probs=256.1
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+|+|+.+..+ +.+++++|++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.++++.++++.+|
T Consensus 76 ia~~~~~~~~--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 152 (388)
T PRK07337 76 IAAWYARRFG--LDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVA-AAEGRPVLVPSGPAERFQLT 152 (388)
T ss_pred HHHHHHHHhC--CCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-HcCCEEEEeecCCccCCcCC
Confidence 3566666555 66789999999999999999999999999999999999999998888 88999999998655678999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++.+++ +++++++++|+||||.+++.+++++|+++|+++++++|+||+|.++.+.+. ..+...+
T Consensus 153 ~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~----- 220 (388)
T PRK07337 153 AADVEAAWGE------RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL----- 220 (388)
T ss_pred HHHHHhhcCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc-----
Confidence 9999998875 788999999999999999999999999999999999999999999887543 2232222
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++++++.|+||.+|++|+|+||+++ ++++++.+...... .+.+++.|.++..++.... .++..+.++.++++
T Consensus 221 --~~~vi~~~S~SK~~~~~G~RiG~~~~-~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~ 295 (388)
T PRK07337 221 --GDDVITINSFSKYFNMTGWRLGWLVV-PEALVGTFEKLAQNLFICASALAQHAALACFEPDT--LAIYERRRAEFKRR 295 (388)
T ss_pred --cCCEEEEEechhhcCCchhheeeeec-CHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCc--hHHHHHHHHHHHHH
Confidence 46788999999999999999999998 78888888776543 3578889999888886533 23346778899999
Q ss_pred HHHHHHHHHhCCCcc-cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecCCCc
Q 019899 239 YDSFVAGLKQLGIRC-SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTSLTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~~~~ 316 (334)
++.+.+.|++.++.+ ..|.+|+|+|++++..... ...++.+++..+++++||.+.||..|+.. .++++|++++ .++
T Consensus 296 r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~-~~~ 373 (388)
T PRK07337 296 RDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHP-AAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA-TSM 373 (388)
T ss_pred HHHHHHHHHhcCCccccCCCeeEEEEEecccccCC-CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec-CCH
Confidence 999999999988765 4678999999999853110 11245678888888899999999999753 3579999999 578
Q ss_pred ccHHHHHHHHHHHH
Q 019899 317 EDIPLVIERIQKVA 330 (334)
Q Consensus 317 ~~l~~~l~~l~~~~ 330 (334)
+++.+++++|.+++
T Consensus 374 ~~l~~~l~rl~~~l 387 (388)
T PRK07337 374 SRLEEAVARLGKLF 387 (388)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999998865
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=325.83 Aligned_cols=309 Identities=22% Similarity=0.379 Sum_probs=257.3
Q ss_pred hhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCC-CCccc
Q 019899 2 AGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST-DNFAF 79 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~ 79 (334)
++++.+..+ +.++++ +|++|+|+++++..++.+++++||+|+++.|+|+.+...++ ..|.+++.+++.++ +++.+
T Consensus 71 a~~~~~~~g--~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 147 (387)
T PRK07777 71 AAQRRRRYG--LEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIA-MAGAHRVPVPLVPDGRGFAL 147 (387)
T ss_pred HHHHHHHhC--CCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-HCCCEEEEeecCCccCCCcC
Confidence 445555555 556676 79999999999999999999999999999999999998888 88999999998654 46789
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ +++++++++|+||||.+++.+++++|+++|+++++++|+||+|+++.|.+..+.++..+.+
T Consensus 148 d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-- 219 (387)
T PRK07777 148 DLDALRAAVTP------RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPG-- 219 (387)
T ss_pred CHHHHHHhcCc------ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCC--
Confidence 99999998875 7899999999999999999999999999999999999999999998886554444444322
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
+ .++++++.|+||.+|++|+|+||+++ ++++++.+..... .+..+++.|.++..++... +.++.+.++.+++
T Consensus 220 -~-~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~ 293 (387)
T PRK07777 220 -M-RERTVTISSAAKTFNVTGWKIGWACG-PAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQA 293 (387)
T ss_pred -C-cCcEEEEeechhhccCcCceeEEEec-CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHH
Confidence 1 56899999999999999999999998 7888888876554 3456778888888888653 3556778889999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC---CCCeEEEEecCC
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI---EPGWFRCCFTSL 314 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~---~~~~iRi~~~~~ 314 (334)
+++.+.+.|++.++++..+++++++|++++.... .++.++++.|++++||.+.||..|+.. .++++|++++ .
T Consensus 294 ~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~-~ 368 (387)
T PRK07777 294 KRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLGY----DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC-K 368 (387)
T ss_pred HHHHHHHHHHhCCCCccCCCcceEEEecccccCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec-C
Confidence 9999999999989888888999999999764211 134689999888899999999988642 2468999998 5
Q ss_pred CcccHHHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVAET 332 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~ 332 (334)
+++++++++++|+++..+
T Consensus 369 ~~~~l~~~l~~l~~~~~~ 386 (387)
T PRK07777 369 RDDTLDEAIRRLRALRGR 386 (387)
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 889999999999987654
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=326.53 Aligned_cols=305 Identities=21% Similarity=0.371 Sum_probs=248.7
Q ss_pred CCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 14 ~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
++++++|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.++++.++++.+|++++++++++
T Consensus 92 ~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~--- 167 (404)
T PRK09265 92 DVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVS-LSGGKPVHYLCDEEAGWFPDLDDIRSKITP--- 167 (404)
T ss_pred CCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHH-HcCCEEEEEecccccCCCCCHHHHHHhccc---
Confidence 6889999999999999999999999999999999999999999888 889999988875556678999999998865
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
+++++++++|+||||.++|.+++++|+++|+++|++||+||+|+++.|++....++..+.+ ..++++++|||
T Consensus 168 ---~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~~vi~~~S~S 239 (404)
T PRK09265 168 ---RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAP-----DLLCVTFNGLS 239 (404)
T ss_pred ---cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCC-----CceEEEEecch
Confidence 7899999999999999999999999999999999999999999999887655556655543 34789999999
Q ss_pred ccCCCCCceEEEEeec-CHH----HHHHHHHhh-cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 174 KDLSLPGFRTGVIYSY-NES----VLAAAKKLT-RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLK 247 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~-~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (334)
|.++++|+|+||++++ ++. +++.+.... ..++.|.++|.++..++...+...++.. ..+++.++++.+.+.|+
T Consensus 240 K~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~r~~~~~~L~ 318 (404)
T PRK09265 240 KAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELIL-PGGRLYEQRDRAWELLN 318 (404)
T ss_pred hhccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 9999999999999963 443 334443322 2356788999999999876443333333 23456777889999998
Q ss_pred hC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHH
Q 019899 248 QL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERI 326 (334)
Q Consensus 248 ~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l 326 (334)
++ ++++..|.+|+|+|++++..... ..+..+...++++++||.+.||..|+...++++|++++ .+++++++++++|
T Consensus 319 ~~~~~~~~~p~~g~~l~~~~~~~~~~--~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~-~~~e~l~~~l~rl 395 (404)
T PRK09265 319 AIPGVSCVKPKGALYAFPKLDPKVYP--IHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL-PRVDDLEEAIGRI 395 (404)
T ss_pred cCCCCcccCCCcceEEEEEecccccC--CCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC-CCHHHHHHHHHHH
Confidence 87 78888899999999999753210 01234555666888999999999997656789999997 7899999999999
Q ss_pred HHHHHHcC
Q 019899 327 QKVAETCK 334 (334)
Q Consensus 327 ~~~~~~~~ 334 (334)
++++++++
T Consensus 396 ~~~l~~~~ 403 (404)
T PRK09265 396 GRFLSGYR 403 (404)
T ss_pred HHHHHHhc
Confidence 99998753
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=316.61 Aligned_cols=312 Identities=20% Similarity=0.361 Sum_probs=264.0
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC------CCC
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR------STD 75 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~------~~~ 75 (334)
++.+++..+. ...+.++|++|+|+.+++..+++.++++||+|++.+|.|.+|..... ..|..++.++.. ..+
T Consensus 79 ~k~~se~~~~-~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~-maG~tpv~v~~~~~~g~~~s~ 156 (420)
T KOG0257|consen 79 AKAYSEFYGG-LLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVV-MAGGTPVFVPLKPKEGNVSSS 156 (420)
T ss_pred HHHHHHHhcc-ccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHh-hcCCcceeeccccccccccCc
Confidence 4455554442 22345579999999999999999999999999999999999999999 999999999987 567
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
+|.+|.++++.++++ ++|+|++++|+||||.+++.++|++|+++|++||++||.||+|.-+.|++..+..+..+
T Consensus 157 ~~~~D~~~le~~~t~------kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~asl 230 (420)
T KOG0257|consen 157 DWTLDPEELESKITE------KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASL 230 (420)
T ss_pred cccCChHHHHhhccC------CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecC
Confidence 899999999999997 89999999999999999999999999999999999999999999999998877777777
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHH-----HHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQ-----EYL 228 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~-----~~~ 228 (334)
. +| +.+++.++|++|++|+.|+|+||+++ ++.+...++...+ .+..+++.|.+.+.++.....+. .+.
T Consensus 231 P---gm-~ertitvgS~gKtf~~TGWrlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~ 305 (420)
T KOG0257|consen 231 P---GM-YERTITVGSFGKTFGVTGWRLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFI 305 (420)
T ss_pred C---ch-hheEEEeccccceeeeeeeeeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHH
Confidence 4 34 89999999999999999999999998 8888887776543 46788899988888886543111 344
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC------CChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS------YSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
..+.+.++++++.+.+.|++.|+++..|++++|+|++++..... ...-++..+..+++++.|+.+.|++.|+..
T Consensus 306 ~~~~~~y~~krdil~k~L~~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~ 385 (420)
T KOG0257|consen 306 TELVKEYKEKRDILAKALEELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSR 385 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCc
Confidence 55889999999999999999999999999999999999822111 111244568899999999999999999875
Q ss_pred C-----CCeEEEEecCCCcccHHHHHHHHH
Q 019899 303 E-----PGWFRCCFTSLTHEDIPLVIERIQ 327 (334)
Q Consensus 303 ~-----~~~iRi~~~~~~~~~l~~~l~~l~ 327 (334)
+ .+.+|++++ .+++-++.+.++|+
T Consensus 386 ~~~~~~~~~~r~~~~-k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 386 EHIKVAERLVRFCFC-KADETLRKAIERLK 414 (420)
T ss_pred hhhHHHHHHHHHHHH-hhHHHHHHHHHHHh
Confidence 3 246788887 78888999999888
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=329.76 Aligned_cols=299 Identities=21% Similarity=0.297 Sum_probs=242.9
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcE-----------EEEE
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVE-----------LIPV 69 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~-----------v~~v 69 (334)
+|+|+.+..+ +++++++|++|+|+++++..+. .++++||+|++++|+|+.+...++ ..|.+ ++.+
T Consensus 85 ia~~~~~~~g--~~~~~~~I~it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~-~~g~~~~~~~~~~~~~~~~v 160 (409)
T PRK07590 85 IAENDYQARG--CDISADEIFISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNV-MAGRTGEANEDGRYSGIVYL 160 (409)
T ss_pred HHHHHHHhcC--CcCChhhEEECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHH-HcCCcccccccccccceeEe
Confidence 3556655555 7889999999999999999865 556899999999999999999998 88886 8889
Q ss_pred eCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc
Q 019899 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF 149 (334)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~ 149 (334)
+++.++++..+.+. .+++++++++|+||||.+++.+++++|+++|++|+++||+||+|+++.+.+..+
T Consensus 161 ~~~~~~~~~~d~~~------------~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~ 228 (409)
T PRK07590 161 PCTAENNFVPELPE------------EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLP 228 (409)
T ss_pred ecccccCCcccCcc------------cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCC
Confidence 88544555555331 278999999999999999999999999999999999999999999988765434
Q ss_pred chhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHH------------HH-hhcc-cCCChHHHHHHH
Q 019899 150 VSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAA------------KK-LTRF-CSISAPTQRLLI 215 (334)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~------------~~-~~~~-~~~~~~~~~~~~ 215 (334)
.++..+.. ..+++++++||||.+|++|+|+||+++ ++++++.+ .. .... .+.+.+.|.++.
T Consensus 229 ~~~~~~~~----~~~~vi~~~SfSK~~~~pGlRiG~~i~-~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~ 303 (409)
T PRK07590 229 HSIYEIEG----ARECAIEFRSFSKTAGFTGTRCAYTVV-PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAE 303 (409)
T ss_pred cchhhCCC----cccceEEEecCccccCCcCceeEEEEc-CHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHH
Confidence 44554432 145789999999999999999999999 77777621 11 1222 357889999998
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
.++.... ..++.+.++.++++++.+.+.|++.++.+..+.+++|+|++++...+ +.++...+++++||.+.|
T Consensus 304 ~~l~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~------~~~~~~~l~~~~gv~v~p 375 (409)
T PRK07590 304 AVYSPEG--KAQIKELIDYYMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMS------SWDFFDKLLQEANVVGTP 375 (409)
T ss_pred HHhcCCc--HHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCcceEEEEECCCCCC------HHHHHHHHHHHCCEEEeC
Confidence 8886432 35677888999999999999999988888888899999999986432 357888888889999999
Q ss_pred CCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHH
Q 019899 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~ 329 (334)
|..|+...++++|+++. .+++++++++++|+++
T Consensus 376 g~~f~~~~~~~iRi~~~-~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 376 GSGFGPSGEGYFRLSAF-GSRENVLEAMERIKKA 408 (409)
T ss_pred hhHhCCCCCCEEEEEcc-CCHHHHHHHHHHHHhh
Confidence 99997655689999975 5889999999999875
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=300.52 Aligned_cols=313 Identities=23% Similarity=0.397 Sum_probs=278.3
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+|+|+.+.+. ..+++++|++|+|.++|+++++.+|.++|..||+|.|.|+-|...+. ..|.+|+++++-++.+|.+|
T Consensus 112 VAeYl~~~l~--~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~-~~~lEVR~ydlLPe~~weID 188 (447)
T KOG0259|consen 112 VAEYLNRDLP--NKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAI-YSGLEVRYYDLLPEKDWEID 188 (447)
T ss_pred HHHHhhcCCC--CccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhh-hcCceeEeecccCcccceec
Confidence 4778777776 56789999999999999999999999999999999999999988888 89999999999889999999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++.++..+++ ++.+++++||+||.|.+|+.+-|++|++.|+++|+.||.||+|+.+.|++.++.++..+..
T Consensus 189 L~~veal~DE------NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fss--- 259 (447)
T KOG0259|consen 189 LDGVEALADE------NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSS--- 259 (447)
T ss_pred hHHHHHhhcc------CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccc---
Confidence 9999999998 8999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCH-------HHHHHHHHhhc-ccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE-------SVLAAAKKLTR-FCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
..-++.+++.||.|=.||+|+||++..++ .+.+.+..+.. ..++++..|.|+-..|.... ++++....
T Consensus 260 --iVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp--~efF~k~~ 335 (447)
T KOG0259|consen 260 --IVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP--EEFFDKKL 335 (447)
T ss_pred --cCceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh--HHHHHHHH
Confidence 77889999999999999999999987444 34566665543 35678899999999997654 67788899
Q ss_pred HHHHHHHHHHHHHHHhC-CCc-ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEE
Q 019899 233 RRIKKLYDSFVAGLKQL-GIR-CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~ 310 (334)
..++.+.+...+.|++. ++. ...|++-+|+|++++-..- ...+++.+++.+|.+|..+.+.||..|+. ++|+|++
T Consensus 336 ~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~-~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~ 412 (447)
T KOG0259|consen 336 SFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLF-PDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIV 412 (447)
T ss_pred HHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhh-ccccccHHHHHHHhhhcceEEeccccccC--CCeEEEE
Confidence 99999999999999998 777 4589999999998764311 11246689999999999999999999986 8999999
Q ss_pred ecCCCcccHHHHHHHHHHHHHHc
Q 019899 311 FTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 311 ~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
++ ...+.++++.++|+++..||
T Consensus 413 i~-~~~~~leea~~Rik~Fc~RH 434 (447)
T KOG0259|consen 413 IT-VEEEMLEEAFSRIKEFCDRH 434 (447)
T ss_pred Ec-cChHHHHHHHHHHHHHHHhh
Confidence 99 88899999999999999987
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=330.38 Aligned_cols=287 Identities=20% Similarity=0.231 Sum_probs=245.4
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
.+++|++|+|+++++..++.+++++||.|++++|+|+.+...++ ..|++++.+|+++ ..+|++++++++++
T Consensus 140 ~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~---~g~~~~~l~~~~~~----- 210 (431)
T PRK15481 140 VAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLR-YAGFSASPVSVDA---EGMQPEKLERALAQ----- 210 (431)
T ss_pred CcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-HcCCeEEeeccCC---CCCCHHHHHHHHhc-----
Confidence 35699999999999999999999999999999999999999999 9999999999842 25899999999875
Q ss_pred CceeEEEEe-CCCCCcccCCCHHHHHHHHHHHHhc-CcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 96 VKVRGILIC-NPANPVGNIIPRETLYELLDFAREK-NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 96 ~~~~~i~~~-~p~nptG~~~~~~~l~~i~~~~~~~-~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++++++ +|+||||.+++.+++++|.++|+++ +++||+||+|.++.+.+. .+.... +.+++++++|||
T Consensus 211 -~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~--~~~~~~------~~~~vi~~~SfS 281 (431)
T PRK15481 211 -GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY--HSVIPQ------TTQRWALIRSVS 281 (431)
T ss_pred -CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC--CCCCcC------CCCCEEEEeeec
Confidence 68888887 9999999999999999999999999 999999999999876432 121111 256899999999
Q ss_pred ccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019899 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGI 251 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 251 (334)
|.++ +|+|+||+++ ++++++.+...... ++.|.+.|.++..++.+.++ .+++.+.++.++++++.+.+.|++.++
T Consensus 282 K~~~-~GlRiG~~i~-~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~~~ 358 (431)
T PRK15481 282 KALG-PDLRLAFVAS-DSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQYGI 358 (431)
T ss_pred cccC-CCceeEEEeC-CHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999 9999999998 88888888765433 45789999999999988654 567788999999999999999999888
Q ss_pred cccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 252 RCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 252 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
.+..|.+|+|+|++++. +..++...|. ++||.+.||..|+.. ..+++|++++..+++++++++++|++++
T Consensus 359 ~~~~p~gg~f~~~~l~~--------~~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~ 429 (431)
T PRK15481 359 AIPSPGDGLNLWLPLDT--------DSQATALTLA-KSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQAL 429 (431)
T ss_pred ccccCCCeEEEEEECCC--------CHHHHHHHHH-HCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHh
Confidence 87789999999999974 1357777754 589999999998653 2468999999778999999999999987
Q ss_pred HH
Q 019899 331 ET 332 (334)
Q Consensus 331 ~~ 332 (334)
.+
T Consensus 430 ~~ 431 (431)
T PRK15481 430 NR 431 (431)
T ss_pred cC
Confidence 53
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=324.25 Aligned_cols=313 Identities=27% Similarity=0.504 Sum_probs=264.5
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
|+|+.+..+ .++++++|++|+|+++++..++.+++++||+|++++|+|..+...++ ..|.+++.++.+.++++.+|+
T Consensus 78 a~~~~~~~~--~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~ 154 (393)
T PRK05764 78 AAKLKRDNG--LDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVK-LAGGVPVFVPTGEENGFKLTV 154 (393)
T ss_pred HHHHHHHhC--CCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHH-HcCCEEEEEecCcccCCcCCH
Confidence 556655545 56788999999999999999999999999999999999999998888 899999999986556788999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+.+++++++ +++++++++|+||||.++|.+++++|+++|++|++++++|++|+.+.+++..+.++.++.. +
T Consensus 155 ~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~- 225 (393)
T PRK05764 155 EQLEAAITP------KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSP--E- 225 (393)
T ss_pred HHHHHhhCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCC--C-
Confidence 999998865 7889999999999999999999999999999999999999999998886554445555422 1
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
..+++++++|+||.++++|+|+||+++ ++++.+.+..... ..+.+++.|.++..++... .+++.+.++.+++++
T Consensus 226 ~~~~~i~~~s~SK~~~~~G~RiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~ 301 (393)
T PRK05764 226 LRDRTITVNGFSKAYAMTGWRLGYAAG-PKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGP---QDEVEEMRQAFEERR 301 (393)
T ss_pred CcCCEEEEecCcccccCccceeEEEec-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Confidence 156899999999999999999999998 8899888876654 3467889999988888631 355677888899999
Q ss_pred HHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 240 DSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 240 ~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
+.+.+.|+++ |+.+..+.+++++|++++...... ..++.++...+++++||.+.||..|+. ++++|++++ .++++
T Consensus 302 ~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~-~~~~~ 377 (393)
T PRK05764 302 DLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKS-ITDSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYA-TSLED 377 (393)
T ss_pred HHHHHHHhhCCCCcccCCCcceEEEEecccccccc-cCCHHHHHHHHHHhCCEEEccccccCC--CCEEEEEec-CCHHH
Confidence 9999999998 888888899999999998643211 113468888888889999999998865 789999998 58999
Q ss_pred HHHHHHHHHHHHHHcC
Q 019899 319 IPLVIERIQKVAETCK 334 (334)
Q Consensus 319 l~~~l~~l~~~~~~~~ 334 (334)
+++++++|.+++++++
T Consensus 378 ~~~~i~~l~~~~~~~~ 393 (393)
T PRK05764 378 LEEGLERIERFLESLK 393 (393)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998875
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=325.06 Aligned_cols=308 Identities=25% Similarity=0.378 Sum_probs=253.0
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ +++++++|++|+|+++++..++.+++++||.|++++|+|+.+...++ ..|..++.++..+++++.+|+
T Consensus 80 a~~~~~~~g--~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~v~~~~~~~~~~~~d~ 156 (398)
T PRK08363 80 VKREKRKNG--VDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVK-FYGGVPVEYRTIEEEGWQPDI 156 (398)
T ss_pred HHHHHHhcC--CCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-HcCCEEEEeccccccCCcCCH
Confidence 455555445 67899999999999999999999999999999999999999999888 889888888433345678999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.|.+. ..+...+..
T Consensus 157 ~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~~---- 225 (398)
T PRK08363 157 DDIRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLTK---- 225 (398)
T ss_pred HHHHhhCCc------ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcCc----
Confidence 999998865 789999999999999999999999999999999999999999999887653 334444433
Q ss_pred CCCcEEEEecccccCCCCCceEEEEee-cCHHHHHHHHHhh-----cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYS-YNESVLAAAKKLT-----RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
..+++++.||||.++++|+|+||+++ .++++++.+.... ..++.+.+.|.++..++... .+++.+.++++
T Consensus 226 -~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~ 301 (398)
T PRK08363 226 -DVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKL 301 (398)
T ss_pred -CCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHH
Confidence 46799999999999899999999997 3555555554321 13567889999999888652 45567778889
Q ss_pred HHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCC
Q 019899 236 KKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSL 314 (334)
Q Consensus 236 ~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~ 314 (334)
+++++.+.+.|+++ ++.+..|.+|+++|++++.... .+..+++..+++++||.+.||..|+...++++|++++ .
T Consensus 302 ~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~----~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-~ 376 (398)
T PRK08363 302 KERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGPW----KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL-P 376 (398)
T ss_pred HHHHHHHHHHHhcCCCCEecCCCeEEEEEEEeccCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-C
Confidence 99999999999887 7787789999999998876211 1235677777788999999999997655689999998 6
Q ss_pred CcccHHHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVAET 332 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~ 332 (334)
+++++++++++|++++++
T Consensus 377 ~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 377 PVEILEEAMDRFEEFMRE 394 (398)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 789999999999998865
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=323.95 Aligned_cols=311 Identities=23% Similarity=0.354 Sum_probs=258.8
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+++|+.+..+ +.++++ +|++|+|+++++..++..++++||+|++++|+|+.+...++ ..|.+++.+++++++ .
T Consensus 76 ia~~~~~~~g--~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~---~ 149 (395)
T PRK08175 76 ISRWYQDRYD--VDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAV-IAGAQVRSVPLVEGV---D 149 (395)
T ss_pred HHHHHHHHhC--CCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-HcCCeEEEEecccCC---C
Confidence 3566666555 667777 79999999999999999999999999999999999988888 899999999985433 3
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
..+++++++++. ..+++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+++.+++....++..+..
T Consensus 150 ~~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~-- 224 (395)
T PRK08175 150 FFNELERAIRES---YPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG-- 224 (395)
T ss_pred cHHHHHHHHhhc---cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC--
Confidence 478888877642 236889999999999999999999999999999999999999999999886655555554432
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..++++++.||||.+|++|+|+||+++ ++++++.+.+... .++.+++.|.++..++... +.++.++++.+++
T Consensus 225 --~~~~~i~~~S~SK~~g~pGlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~ 298 (395)
T PRK08175 225 --AKDVAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKR 298 (395)
T ss_pred --cccCEEEEeeccccccCcchhheeeeC-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHH
Confidence 146788999999999999999999998 8899998887654 3566778888888888642 4567788899999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++++.+.|++.++.+..+++|+|+|++++..... .++.+++.++++++||.+.||..|+...++++|++++ .+++
T Consensus 299 ~~~~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~~~---~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~-~~~~ 374 (395)
T PRK08175 299 RRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAA---MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI-ENRD 374 (395)
T ss_pred HHHHHHHHHHHcCCcccCCCEEEEEEEECCcccCC---CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC-CCHH
Confidence 99999999999988888888999999999865321 1346788888888999999999987656689999998 6789
Q ss_pred cHHHHHHHHHHHHHH
Q 019899 318 DIPLVIERIQKVAET 332 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~ 332 (334)
.+.+++++|++++++
T Consensus 375 ~~~~al~~l~~~l~~ 389 (395)
T PRK08175 375 RIRQAIRGIKAMFRA 389 (395)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999876
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=320.39 Aligned_cols=304 Identities=23% Similarity=0.330 Sum_probs=253.3
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++++.+..+ ..+++++|++|+|+++++..++.+++++||+|+++.|+|+.+...++ ..|.+++.+++++++++.+|.
T Consensus 77 a~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~ 153 (386)
T PRK07550 77 AAHYSRLYG--AAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLD-MLGIRPVYLPCDEGPGLLPDP 153 (386)
T ss_pred HHHHHHHhC--CCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-hcCCEEEEEecCCCcCCCCCH
Confidence 455555445 56788999999999999999999999999999999999999998888 899999999986556778899
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ +++++++++|+||||.++|.+++++|+++|++++++||+|++|+++.+.+....+......
T Consensus 154 ~~l~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~---- 223 (386)
T PRK07550 154 AAAEALITP------RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPD---- 223 (386)
T ss_pred HHHHHHhcc------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCC----
Confidence 999999976 7889999999999999999999999999999999999999999988664322222322111
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
..++++++.||||.+|++|+|+||+++ ++++++.+...... .+.+.+.|.++..++.. .+++.++.++.+++++
T Consensus 224 ~~~~~i~~~S~SK~~g~~G~RiG~i~~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~ 299 (386)
T PRK07550 224 WDDTLVHLYSFSKSYALTGHRVGAVVA-SPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRAGNRAEIARRR 299 (386)
T ss_pred ccccEEEEecchhhccCcccceEeeec-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence 146789999999999999999999998 78888888766543 45688899999998865 2566677888999999
Q ss_pred HHHHHHHHhC-CCcccCCCceeEEeeecCC-cCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 240 DSFVAGLKQL-GIRCSESSAGLYCWADMSG-LIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 240 ~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+.+.+.|++. ++.+ .+.+++++|++++. .. ++.+++..|++++||.+.||..|+...++++|++++..+++
T Consensus 300 ~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~ 372 (386)
T PRK07550 300 DAFRAVFARLPGWEL-LASGAYFAYVRHPFPDR------PSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVA 372 (386)
T ss_pred HHHHHHHHhCCCcee-CCCceEEEEecCCCCCC------CHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHH
Confidence 9999999886 6544 35689999999875 32 34688898888899999999999765568999999866889
Q ss_pred cHHHHHHHHHHH
Q 019899 318 DIPLVIERIQKV 329 (334)
Q Consensus 318 ~l~~~l~~l~~~ 329 (334)
++++++++|+++
T Consensus 373 ~~~~~~~~l~~~ 384 (386)
T PRK07550 373 GIGELVERLRAF 384 (386)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=321.57 Aligned_cols=307 Identities=26% Similarity=0.453 Sum_probs=255.5
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc-c
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF-S 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~-~ 80 (334)
++++.. .+ +++++++|++|+|+++++..++..++++||+|++++|+|..+...++ ..|.+++.++++.++++.. +
T Consensus 76 a~~~~~-~~--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~g~~~~~ 151 (397)
T PRK07568 76 AKYYKK-WG--IDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFAT-SAGVKIVPVTTKIEEGFHLPS 151 (397)
T ss_pred HHHHHH-hC--CCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHH-HcCCEEEEeecCcccCCCCCC
Confidence 445542 33 57889999999999999999999999999999999999999988887 8899999999854445443 6
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++++++. +++++++++|+||||.+++.+++++|+++|+++++++|+|++|+++.+.+..+.++..+..
T Consensus 152 ~~~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~--- 222 (397)
T PRK07568 152 KEEIEKLITP------KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEG--- 222 (397)
T ss_pred HHHHHHhcCc------cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCC---
Confidence 7899888865 7899999999999999999999999999999999999999999999887655555555432
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc-ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR-FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
..++++++.|+||.+|++|+|+||++++++++++.+..... .++.+.+.|.++..+++.. ++++.++++.+++++
T Consensus 223 -~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~ 298 (397)
T PRK07568 223 -LEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRR 298 (397)
T ss_pred -CcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHH
Confidence 15789999999999999999999999866788887765433 3678889999999998753 456678888999999
Q ss_pred HHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHh-----cCeEEcCCCCcCCC---CCCeEEEE
Q 019899 240 DSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNI-----AKINVTPGSACHCI---EPGWFRCC 310 (334)
Q Consensus 240 ~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~~g~~~~~~---~~~~iRi~ 310 (334)
+.+.+.|+++ ++.+..|.+|+++|++++.. ++.++...++++ .||.+.||..|+.. .++++|++
T Consensus 299 ~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls 371 (397)
T PRK07568 299 DILYEELNKIPGVVCEKPKGAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIA 371 (397)
T ss_pred HHHHHHHhcCCCceecCCCcceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEE
Confidence 9999999887 67777889999999999752 345788887764 69999999988532 24799999
Q ss_pred ecCCCcccHHHHHHHHHHHHHHc
Q 019899 311 FTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 311 ~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
++ .+++++++++++|+++++++
T Consensus 372 ~~-~~~~~~~~~~~~l~~~l~~~ 393 (397)
T PRK07568 372 YV-LNEEDLKRAMEILKEALEKY 393 (397)
T ss_pred Ee-CCHHHHHHHHHHHHHHHHHh
Confidence 98 67899999999999998764
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=323.52 Aligned_cols=307 Identities=34% Similarity=0.588 Sum_probs=266.0
Q ss_pred hhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 2 AGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
|+|+.+..+ +.++++ +|++++|+.+++..++..+ .++||+|+++.|+|+.+...++ ..|.+++.+++..++++++
T Consensus 54 a~~~~~~~~--~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 130 (363)
T PF00155_consen 54 ADFLGRRYG--VPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAAR-LLGAEVIPVPLDSENDFHL 130 (363)
T ss_dssp HHHHHHHHT--HHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHH-HTTSEEEEEEEEETTTTEE
T ss_pred HHHhhhccC--cccccceEEEEecccccchhhhhhcccccccccceecCCcccccccccc-ccCceeeeccccccccccc
Confidence 556664444 667888 9999999999999999999 8899999999999999999999 9999999999866688899
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch-hhhhhhc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS-MAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~-~~~~~~~ 158 (334)
|+++|++.+++...++.+++++++++|+||||.+++.+++++|+++|++++++||+||+|+.+.++.....+ ...+..
T Consensus 131 d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~- 209 (363)
T PF00155_consen 131 DPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDE- 209 (363)
T ss_dssp THHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTT-
T ss_pred cccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccc-
Confidence 999999999975444335789999999999999999999999999999999999999999999987554333 233322
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..+++++.|+||.+|++|+|+||+++ ++++++.++.....+..+++.+.++..++.......+++.+++++++++
T Consensus 210 ----~~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 284 (363)
T PF00155_consen 210 ----DDNVIVVGSLSKSFGLPGLRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLREN 284 (363)
T ss_dssp ----TSTEEEEEESTTTTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccceeeeeccccccccccccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHH
Confidence 45589999999999999999999999 8999999998888777799999999999887654455889999999999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++++.+.|++.++.+..+++|+++|+.++.. ++.++.+.|+++.||.+.||..|+. ++++|++++..++++
T Consensus 285 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~ 355 (363)
T PF00155_consen 285 RDLLREALEEIGITVLPPEAGFFLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEED 355 (363)
T ss_dssp HHHHHHHHHHTTSEEEHHSBSSEEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHH
T ss_pred HHHHHHHHHHhhhheeeccCccEEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHH
Confidence 9999999999999999888999999998864 4578999988877999999999987 889999995479999
Q ss_pred HHHHHHHH
Q 019899 319 IPLVIERI 326 (334)
Q Consensus 319 l~~~l~~l 326 (334)
+++++++|
T Consensus 356 ~~~~~~~l 363 (363)
T PF00155_consen 356 LEEALERL 363 (363)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=315.09 Aligned_cols=298 Identities=21% Similarity=0.307 Sum_probs=238.9
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 78 (334)
+|+|+.++.+ +.+++++|++|+|+++++..++..++ ++||.|++++|+|+.+...+. ..|++++.++++.++++.
T Consensus 69 ia~~l~~~~g--~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-~~g~~v~~v~~~~~~~~~ 145 (374)
T PRK05839 69 QRGFFKRRFK--IELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAI-ASRAKVLLMPLTKENDFT 145 (374)
T ss_pred HHHHHHHHhC--CCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHH-hcCCEEEEeecccccCCc
Confidence 3567766656 67899999999999999999888764 578999999999999999998 999999999986666777
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|+++.+ + + +++++++++|+||||.++|.+++++|+++|+++|++||+||+|.++.+.+ ...++......
T Consensus 146 ~d~~~~~--~-~------~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~ 215 (374)
T PRK05839 146 PSLNEKE--L-Q------EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASIL 215 (374)
T ss_pred CCcchhh--h-c------cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcc
Confidence 7765432 2 2 68999999999999999999999999999999999999999999976543 23333322110
Q ss_pred c-ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 159 E-EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 159 ~-~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
. ..+.+++++++||||.++++|+|+||+++ ++++++.+..... .++.+...|.++..++... +++.+.++++
T Consensus 216 ~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~ 290 (374)
T PRK05839 216 VGNESFKNVLVINSISKRSSAPGLRSGFIAG-DASILKKYKAYRTYLGCASPLPLQKAAAVAWLDD----EHAEFFRNIY 290 (374)
T ss_pred cCccccCcEEEEeccccccCCccceeEEEec-CHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccc----hHHHHHHHHH
Confidence 0 01247899999999999999999999998 7889888877643 3567888888888777553 3456667788
Q ss_pred HHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEEEEecC
Q 019899 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFRCCFTS 313 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iRi~~~~ 313 (334)
+++++.+.+.| ++. .|.+|+|+|++++. ..+++.++++++||.+.||..|+.. .++++|++++
T Consensus 291 ~~~~~~~~~~l---~~~--~p~gg~fi~~~~~~---------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~- 355 (374)
T PRK05839 291 AKNLKLAREIL---GIT--IPPATFYVWLPVDN---------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV- 355 (374)
T ss_pred HHHHHHHHHhc---CCC--CCCeeEEEEEeCCC---------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec-
Confidence 88888877765 333 67899999999873 2578888777799999999888653 3689999998
Q ss_pred CCcccHHHHHHHHHHHHH
Q 019899 314 LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~ 331 (334)
.+++++.+++++|+++++
T Consensus 356 ~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 356 YDTPKLEKALEIIKTYLE 373 (374)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 578999999999999875
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=315.07 Aligned_cols=295 Identities=20% Similarity=0.355 Sum_probs=246.3
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
.+++.+++.+++++++|++|+|+++++..++.++ .+ +.|++++|+|+.+...++ ..|.+++.++++.++++.+| ++
T Consensus 58 ~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~d-~~ 133 (354)
T PRK06358 58 ELRKRIASFEQLDLENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYERALK-AFDAEIEYAELTEETNFAAN-EI 133 (354)
T ss_pred HHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHHHH-HcCCeeEEEeCccccCCCcc-HH
Confidence 3566666667889999999999999999999987 34 589999999999999988 89999999998656677888 67
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+.+.+.+ +++++++++|+||||.+++.+++++|+++|+++++++|+||+|.+|.+++.....+..+.. .
T Consensus 134 ~~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~-----~ 202 (354)
T PRK06358 134 VLEEIKE------EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLEN-----F 202 (354)
T ss_pred HHHhhcc------CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccC-----C
Confidence 6666643 6899999999999999999999999999999999999999999999886543222333322 5
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
+++++++||||.+|++|+|+||++++++.+++.+.+....++.+.+.|.++..++... +++.+.++.++++++.+.
T Consensus 203 ~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~ 278 (354)
T PRK06358 203 KNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDK----EYIKKTIQWIKEEKDFLY 278 (354)
T ss_pred CCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999998678888888887777888999999999998653 345667778889999999
Q ss_pred HHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 244 AGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 244 ~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
+.|++. ++.+..+.++ |+|++++.. .++.+.|++ +||.+.||..|+...++++|++++ ++++.+++
T Consensus 279 ~~L~~~~~~~~~~~~g~-f~~~~~~~~---------~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l 345 (354)
T PRK06358 279 NGLSEFKGIKVYKPSVN-FIFFKLEKP---------IDLRKELLK-KGILIRSCSNYRGLDENYYRVAVK--SREDNKKL 345 (354)
T ss_pred HHHhcCCCcEEcCCcce-EEEEEcCch---------HHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHH
Confidence 999887 7776667555 788988742 578888665 799999999985445689999998 88999999
Q ss_pred HHHHHHHH
Q 019899 323 IERIQKVA 330 (334)
Q Consensus 323 l~~l~~~~ 330 (334)
++.|++++
T Consensus 346 ~~~l~~~~ 353 (354)
T PRK06358 346 LKALEVIL 353 (354)
T ss_pred HHHHHHHh
Confidence 99998875
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=320.25 Aligned_cols=296 Identities=19% Similarity=0.369 Sum_probs=233.4
Q ss_pred CCcEEEecCcHHHHHHHHHH-----hcCCCCeEEecCCCCCChhhhhhhcc--CcEEEEEeCCCCCCccccHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFC-----LADHGNALLVPSPYYPGFDRDIRFRT--GVELIPVHCRSTDNFAFSITALDQAFN 89 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~-----l~~~gd~vl~~~p~~~~~~~~~~~~~--g~~v~~v~~~~~~~~~~~~~~l~~~l~ 89 (334)
.++|++|+|+++++..++.+ ++++||+|++++|+|+.|...++ .. |.+++.++..++++|++|.++++++++
T Consensus 161 ~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~-l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~ 239 (527)
T PRK09275 161 EFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE-LPRYDLEVVHINADEENEWQYPDSELEKLRD 239 (527)
T ss_pred cCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH-HcCCCeEEEEeecCcccCCCCCHHHHHhhcC
Confidence 34899999999999999886 68999999999999999999877 65 456666666556779999999999876
Q ss_pred HHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh--cCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEE
Q 019899 90 QARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE--KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVH 167 (334)
Q Consensus 90 ~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (334)
+ ++|++++++|+||||.++|.+++++|+++|++ ++++||+||+|+.+.+ .+.++.... +++++
T Consensus 240 ~------~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~~------~~~~I 304 (527)
T PRK09275 240 P------SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAVL------PYNTI 304 (527)
T ss_pred C------CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHhC------CCCEE
Confidence 5 89999999999999999999999999999954 5999999999999775 233443332 57899
Q ss_pred EEecccccCCCCCceEEEEeecCHHHHH----HH--------------------------------HHhh--cccCCChH
Q 019899 168 IIYGLSKDLSLPGFRTGVIYSYNESVLA----AA--------------------------------KKLT--RFCSISAP 209 (334)
Q Consensus 168 ~~~s~sK~~~~~g~r~g~i~~~~~~~~~----~~--------------------------------~~~~--~~~~~~~~ 209 (334)
++.||||.++++|+|+||++++++.+.+ .+ ++.. ...+.+++
T Consensus 305 ~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p 384 (527)
T PRK09275 305 LVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTP 384 (527)
T ss_pred EEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCH
Confidence 9999999999999999999995543222 11 1221 23466778
Q ss_pred HHHHH-----HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC-C---------C
Q 019899 210 TQRLL-----ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS-Y---------S 274 (334)
Q Consensus 210 ~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~-~---------~ 274 (334)
.|.++ .+++... +++..++++.++++++.+.+.|. .++....+.++||+|++++..... . .
T Consensus 385 ~Q~a~al~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~ 460 (527)
T PRK09275 385 QQVQMALFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKK 460 (527)
T ss_pred HHHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhc
Confidence 88863 3444432 45667888899999999988882 233335688999999999753210 0 0
Q ss_pred hhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 275 EKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 275 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++.+++.+|+++.||.+.||..||. .++++|+|++..+++++.++.++|+++++++
T Consensus 461 ~~~~~~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y 518 (527)
T PRK09275 461 NYSPVDLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEY 518 (527)
T ss_pred cCCHHHHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 124578999999999999999999986 3678999999778899999999999999875
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=335.01 Aligned_cols=319 Identities=17% Similarity=0.275 Sum_probs=253.9
Q ss_pred ChhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
|++|+.++.+ +..++ ++|++++|+++++..++.+++++||.|+++.|+|+.|...++ ..|.+++.+|+.+++++.+
T Consensus 739 La~~la~~~G--v~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~-~~Ga~vv~Vpl~~e~gf~l 815 (1082)
T PLN02672 739 ILQFIKSNYG--FPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAK-FLKANFRRIPTKSSDGFKL 815 (1082)
T ss_pred HHHHHHHHhC--cCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-HcCCEEEEEecccccCCCC
Confidence 4567777666 55544 489999999999999999999999999999999999999999 9999999999976678999
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCC-CCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc--chhhhhh
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPA-NPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF--VSMAEIL 156 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~-nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~--~~~~~~~ 156 (334)
|.+.+++++++. +.+++++++|+ ||||.+++.+++++|+++|++|+++||+||+|+++.|++... .++.+..
T Consensus 816 D~d~Le~al~~~-----~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l 890 (1082)
T PLN02672 816 TAKTLASTLETV-----KKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSIL 890 (1082)
T ss_pred CHHHHHHHhccC-----CCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHH
Confidence 999999998641 34579999997 999999999999999999999999999999999998865421 1222211
Q ss_pred hccc-c-CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhh---C--ChHHHHHHHH
Q 019899 157 EAEE-V-DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISML---S--DTKFIQEYLE 229 (334)
Q Consensus 157 ~~~~-~-~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~--~~~~~~~~~~ 229 (334)
...+ . +..++++++||||.++++|+|+||++++++++++.+.........+...+.++..++ . ...+ .+++.
T Consensus 891 ~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~ 969 (1082)
T PLN02672 891 SRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVA 969 (1082)
T ss_pred HHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHH
Confidence 1000 0 124799999999999999999999999667788888775444333344454444433 2 2333 45678
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCC------C-----CChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP------S-----YSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~------~-----~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+.++.++++++++.+.|++.|+.+..|++||++|++++.... . ....++.+++..|+++.||.+.||..
T Consensus 970 e~r~~Lk~rRd~L~e~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~ 1049 (1082)
T PLN02672 970 EQKKILKSRAERLKETLEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSW 1049 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcc
Confidence 888899999999999999999999999999999998753211 0 01235678999999888999999988
Q ss_pred cCCCCCCeEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
|+. ++++|++++ .+++++++++++|+++.+
T Consensus 1050 FG~--~g~~RIsfa-~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1050 TGI--PGYCRFSFA-LEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred cCC--CCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 874 789999999 678899999999998764
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=316.83 Aligned_cols=292 Identities=16% Similarity=0.324 Sum_probs=231.0
Q ss_pred cEEEecCcHHHHHHHHHH-----hcCCCCeEEecCCCCCChhhhhhhc--cCcEEEEEeCCCCCC-----ccccHHHHHH
Q 019899 19 QIVLTAGATPAVEILCFC-----LADHGNALLVPSPYYPGFDRDIRFR--TGVELIPVHCRSTDN-----FAFSITALDQ 86 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~-----l~~~gd~vl~~~p~~~~~~~~~~~~--~g~~v~~v~~~~~~~-----~~~~~~~l~~ 86 (334)
+|++|+|+++|+..++.+ ++++||+|++++|+|+.|...+. . .|.+++.++....++ |++|.+++++
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~-l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~ 235 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE-LPRYDFEVVRIKADEMTEDGTHTWQYPDKELEK 235 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH-HhcCCcEEEEeecccccccccccCCCCHHHHHH
Confidence 899999999999999887 68999999999999999999876 5 478888888754333 8899999998
Q ss_pred HHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 87 AFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK--NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 87 ~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++ +++++++++|+||||.++|.+++++|+++|++| +++||+||+|+.|.+ .+.++.... ++
T Consensus 236 ~~~~------~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~~------~~ 300 (521)
T TIGR03801 236 LRDP------SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAEL------PY 300 (521)
T ss_pred hcCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhhC------CC
Confidence 7765 899999999999999999999999999999986 999999999998775 233444332 56
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHH------------HHH------------------------HHhh--cccCC
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVL------------AAA------------------------KKLT--RFCSI 206 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~------------~~~------------------------~~~~--~~~~~ 206 (334)
+++++.|+||.+|++|+|+||++++++.+. +.+ +... ...+.
T Consensus 301 ~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~ 380 (521)
T TIGR03801 301 NTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGL 380 (521)
T ss_pred CEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCC
Confidence 899999999999999999999998544221 111 1111 22455
Q ss_pred ChHHHH-----HHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--ccCCCceeEEeeecCCcCCC-C-----
Q 019899 207 SAPTQR-----LLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIR--CSESSAGLYCWADMSGLIPS-Y----- 273 (334)
Q Consensus 207 ~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~g~~~~~~~~~~~~~-~----- 273 (334)
+++.|. ++.+++... ..+..++++.++++++.+.+.| |+. ...+.++||+|++++..... .
T Consensus 381 s~p~Q~q~al~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~ 454 (521)
T TIGR03801 381 STPQQVQMALFSLFALMDKE---NAYKAETKDICRRREKLLFRGL---GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFS 454 (521)
T ss_pred CcHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCeEEEEEeehHHHHHHhcchHHH
Confidence 677676 233444432 4567788889999999999888 454 34678899999999853110 0
Q ss_pred ----ChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 274 ----SEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 274 ----~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
...+..+++.+|+++.||.+.||..|+.. ++++|+|++..+++++.++.++|+++++++
T Consensus 455 ~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~~~~ 517 (521)
T TIGR03801 455 SYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKILDEY 517 (521)
T ss_pred HHHhccCCHHHHHHHHHHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 01145789999999999999999999863 568999999779999999999999999764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=313.42 Aligned_cols=289 Identities=23% Similarity=0.320 Sum_probs=233.1
Q ss_pred CCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCc-----------EEEEEeCCCCCCccccHH
Q 019899 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGV-----------ELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 14 ~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~-----------~v~~v~~~~~~~~~~~~~ 82 (334)
.+++++|++|+|+++++..++ .++.+||+|++++|+|+.+...++ ..|. +++.+++..++++..+++
T Consensus 92 ~~~~d~I~it~Ga~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 169 (402)
T TIGR03542 92 RIDPEEIFISDGAKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNV-MAGRAGVLDDDGRYSKITYLPCTKENNFIPDLP 169 (402)
T ss_pred CCCHHHEEECCCcHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHH-HcCCccccccccccceEEEeecchhhCCCCCcc
Confidence 478999999999999999864 556899999999999999999998 8999 999998754455555532
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
. . .+++++++++|+||||.++|.+++++|+++|++++++||+||+|.++.+++..+.++..+.. .
T Consensus 170 ~------~-----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~----~ 234 (402)
T TIGR03542 170 E------E-----PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPG----A 234 (402)
T ss_pred c------c-----CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCC----C
Confidence 1 1 27899999999999999999999999999999999999999999998876533334444432 1
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHH--------HHHHH-hhc-ccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVL--------AAAKK-LTR-FCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~--------~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.+++++++||||.+|++|+|+||+++ +++++ +.+.. ... ..+.+.+.|.++..++....+ .+..+.+
T Consensus 235 ~~~vi~~~SfSK~~g~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~ 311 (402)
T TIGR03542 235 KECAIEFRSFSKTAGFTGVRLGWTVV-PKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAI 311 (402)
T ss_pred cccEEEEecCccccCCCCcceEEEEe-cHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHH
Confidence 36789999999999999999999999 66665 22221 222 335788999988888876432 3345667
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT 312 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~ 312 (334)
+.++++++.+.+.|++.++++..+.+++|+|++++...+ +.++...++++.||.+.||+.|+...++++|++++
T Consensus 312 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~v~l~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~ 385 (402)
T TIGR03542 312 SYYMENARILRKALEAAGFKVYGGEHAPYLWVKTPEGIS------SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAF 385 (402)
T ss_pred HHHHHHHHHHHHHHHhcCceecCCCceeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec
Confidence 888999999999999888887778899999999986433 36889998888899999999987655789999986
Q ss_pred CCCcccHHHHHHHHHHH
Q 019899 313 SLTHEDIPLVIERIQKV 329 (334)
Q Consensus 313 ~~~~~~l~~~l~~l~~~ 329 (334)
.+++++++++++|+++
T Consensus 386 -~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 386 -GKRENIVEACERIKEA 401 (402)
T ss_pred -CCHHHHHHHHHHHHhh
Confidence 5889999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=311.82 Aligned_cols=287 Identities=17% Similarity=0.277 Sum_probs=239.2
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||+|++++|+|+.|...++ ..|.+++.++++ ++.+|++++
T Consensus 69 Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-~~g~~v~~v~~~---~~~~d~~~l 144 (366)
T PRK01533 69 LRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAI-IEGCEVKEVALN---NGVYDLDEI 144 (366)
T ss_pred HHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHH-HcCCEEEEeecC---CCCcCHHHH
Confidence 5566666677899999999999999999999999999999999999999999998 999999999973 447999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++++ +++++++++|+||||.+++.+++++|+++|++++ ++|+||+|.+|.+.+.....+..+.. .+
T Consensus 145 ~~~~~~------~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~-----~~ 212 (366)
T PRK01533 145 SSVVDN------DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEK-----HK 212 (366)
T ss_pred HHHhCc------CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhcc-----CC
Confidence 998865 7899999999999999999999999999998877 56679999988765322222222222 57
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.||||.+|++|+|+||+++ ++++++.+.+....++.|.++|.++..++++.++ ..+.++...++++++.+
T Consensus 213 ~vi~~~SfSK~~~l~GlRiG~~i~-~~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~~~~~~~~r~~~~~ 287 (366)
T PRK01533 213 NILVLRTFSKAYGLASFRVGYAVG-HEELIEKLNVVRLPFNVSSLAQKAATIAFGDDEF----IEEIVRVNTEGLRQYES 287 (366)
T ss_pred CEEEEeCchHHhcChHHHHhHHhC-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998 7899999988777788999999999999976443 44556667777888888
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.++..|+++..+. +.|+|++++. +.++.+.|+ ++||.|++ | ++++||+++ ++++.+++++
T Consensus 288 ~l~~~g~~~~~~~-~nf~~~~~~~---------~~~~~~~l~-~~GI~Vr~---~----~~~iRis~~--~~~~~~~l~~ 347 (366)
T PRK01533 288 FCKENEIPFYQSQ-TNFIFLPVEN---------GGEIYEACA-HAGFIIRP---F----PNGVRITVG--TREQNEGVIS 347 (366)
T ss_pred HHHhCCCccCCCc-CcEEEEeCCC---------HHHHHHHHH-HCCcEEcc---C----CCceEEeCC--CHHHHHHHHH
Confidence 8888888877775 5578888862 246777755 59999997 3 468999998 8899999999
Q ss_pred HHHHHHHH
Q 019899 325 RIQKVAET 332 (334)
Q Consensus 325 ~l~~~~~~ 332 (334)
+|+++++.
T Consensus 348 al~~~~~~ 355 (366)
T PRK01533 348 VLQQHFEN 355 (366)
T ss_pred HHHHHHHh
Confidence 99998864
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=307.42 Aligned_cols=296 Identities=27% Similarity=0.468 Sum_probs=244.8
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+....+ +++++++|++|+|+++++..++.+++++||.|++++|+|..+...++ ..|.+++.+++++ +++.+|+
T Consensus 83 a~~l~~~~~--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~-~~g~~v~~v~~~~-~~~~~d~ 158 (394)
T PRK06836 83 AESLNRRFG--TPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVD-NHGGKLVVVPTDT-DTFQPDL 158 (394)
T ss_pred HHHHHHHhC--CCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-HcCCEEEEEecCC-ccCcCCH
Confidence 556655545 57889999999999999999999999999999999999999998888 8999999999853 3468999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh------cCcEEEEeccccccccCCCCcchhhhh
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE------KNIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~------~~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
+++++++++ +++++++++|+||||.++|.+++++|+++|++ |++++|+||+|.++.+++.....+...
T Consensus 159 ~~l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 232 (394)
T PRK06836 159 DALEAAITP------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKY 232 (394)
T ss_pred HHHHhhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHc
Confidence 999999975 78999999999999999999999999999999 899999999999998865443333221
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHH------HHHhhc---ccCCChHHHHHHHHhhCChHHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAA------AKKLTR---FCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
.+++++++|+||.+|++|+|+||+++ ++.+.+. +..... ..+.++..|.++..++.+..
T Consensus 233 -------~~~~i~~~S~SK~~~~pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---- 300 (394)
T PRK06836 233 -------YDNSIVVYSFSKSLSLPGERIGYIAV-NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV---- 300 (394)
T ss_pred -------cCcEEEEecchhhccCcceeeEEEec-CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH----
Confidence 56899999999999999999999998 5555322 111111 23577888999998887631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCe
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~ 306 (334)
.++.++++++.+.+.|++.|+.+..+.+|+++|+.+|.. +..++++. +.++||.+.||..|+. +++
T Consensus 301 ----~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~-------~~~~~~~~-l~~~gv~v~~g~~f~~--~~~ 366 (394)
T PRK06836 301 ----DVSIYKRNRDLLYDGLTELGFECVKPQGAFYLFPKSPEE-------DDVAFCEK-AKKHNLLLVPGSGFGC--PGY 366 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHhCCCEeecCCceEEEEEeCCCC-------CHHHHHHH-HHhCCEEEECchhcCC--CCe
Confidence 245677788889999988898888888999999988752 23577766 5668999999998864 579
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHHcC
Q 019899 307 FRCCFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 307 iRi~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
+||+++ .+++++++++++|++++++++
T Consensus 367 iRi~~~-~~~~~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 367 FRLSYC-VDTETIERSLPAFEKLAKEYK 393 (394)
T ss_pred EEEEec-CCHHHHHHHHHHHHHHHHHhc
Confidence 999998 789999999999999998864
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=306.41 Aligned_cols=289 Identities=24% Similarity=0.386 Sum_probs=233.8
Q ss_pred ChhhhhhhhcCCCC-CCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc
Q 019899 1 MAGFMSQVLGQAVS-FDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 1 i~~~~~~~~~~~~~-~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 78 (334)
+|+|+.++.+ +. +++++|++|+|+++++..++..+ +++||.|++++|+|+.+...++ ..|.+++.++.
T Consensus 71 ia~~l~~~~~--~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~------- 140 (364)
T PRK07865 71 IVGWLARRRG--VTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGAR-LAGATVVRADS------- 140 (364)
T ss_pred HHHHHHHHcC--CCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHH-hcCCEEEecCC-------
Confidence 3567766555 54 78999999999999999988888 7999999999999999999888 89999888752
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
++++++ .+++++++++|+||||.+++.+++++|+++|++++++||+||+|.++.+.+.....+.....
T Consensus 141 --~~~l~~---------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~- 208 (364)
T PRK07865 141 --LTELGP---------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVC- 208 (364)
T ss_pred --hhhCCc---------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCcccccccc-
Confidence 223322 27899999999999999999999999999999999999999999998876532211111000
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
+.+.+++++++||||.++++|+|+||+++ ++++++.++... ..++.+++.|.++..++... +++.+.++.++
T Consensus 209 -~~~~~~~i~~~S~SK~~~~~GlRiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~ 282 (364)
T PRK07865 209 -GGDHTGLLAVHSLSKQSNLAGYRAGFVAG-DPALVAELLEVRKHAGMMVPAPVQAAMVAALGDD----AHVREQRERYA 282 (364)
T ss_pred -CCccceEEEEeechhccCCCceeeEEEec-CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHH
Confidence 01247899999999999999999999998 888888887654 33567889999999998763 34566778889
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
++++.+.+.|++.|+.+..+++|+|+|++++. +..++.+. ++++||.+.||..|+...++++|++++ .++
T Consensus 283 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~-l~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~ 352 (364)
T PRK07865 283 RRRAVLRPALEAAGFRVDHSEAGLYLWATRGE--------DCWDTVAW-LAERGILVAPGDFYGPAGAQHVRVALT-ATD 352 (364)
T ss_pred HHHHHHHHHHHHcCCcccCCCccEEEEEeCCC--------CHHHHHHH-HHHCCEEEeCccccCcCCCCEEEEEec-CCH
Confidence 99999999999989888888999999998742 22456666 566899999999887655789999998 478
Q ss_pred ccHHHHHHHHH
Q 019899 317 EDIPLVIERIQ 327 (334)
Q Consensus 317 ~~l~~~l~~l~ 327 (334)
+++++++++|+
T Consensus 353 ~~~~~~~~~l~ 363 (364)
T PRK07865 353 ERIAAAVERLA 363 (364)
T ss_pred HHHHHHHHHhh
Confidence 99999998875
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=309.28 Aligned_cols=290 Identities=20% Similarity=0.254 Sum_probs=234.5
Q ss_pred CCCCCCcEE--EecCcHHHHHHHHH---HhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHH
Q 019899 13 VSFDPSQIV--LTAGATPAVEILCF---CLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQA 87 (334)
Q Consensus 13 ~~~~~~~i~--~~~g~~~~~~~~~~---~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~ 87 (334)
..+++++|+ .|.|+++++..++. +++++||+|++++|+|+.|...++ ..|.+++.+|+.+++++++|++.++++
T Consensus 91 ~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~l~~~~~~~~d~~~l~~~ 169 (404)
T PTZ00376 91 YALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK-SAGLNVKEYRYYDPKTKGLDFDGMLED 169 (404)
T ss_pred cccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-HcCCceeeccccCcccCCcCHHHHHHH
Confidence 346888998 58999999988875 668999999999999999999999 999999999985556689999999999
Q ss_pred HHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC--CcchhhhhhhccccCCCc
Q 019899 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE--EFVSMAEILEAEEVDKDR 165 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 165 (334)
++.. ..+.+++++++||||||.++|.+++++|+++|++|+++||+||+|.++.+.+. ...++..+.. ..++
T Consensus 170 ~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~----~~~~ 242 (404)
T PTZ00376 170 LRTA---PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAE----RGVE 242 (404)
T ss_pred HHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHh----cCCc
Confidence 8642 12457778899999999999999999999999999999999999999988541 2223333332 1458
Q ss_pred EEEEecccccCCCCCceEEEEe--ecCHHHHHHH----HHh-hccc-CCChHHHHHHHHhhCChHHHHH---HHHHHHHH
Q 019899 166 VHIIYGLSKDLSLPGFRTGVIY--SYNESVLAAA----KKL-TRFC-SISAPTQRLLISMLSDTKFIQE---YLETNKRR 234 (334)
Q Consensus 166 ~~~~~s~sK~~~~~g~r~g~i~--~~~~~~~~~~----~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~ 234 (334)
+++++||||.++++|+|+||++ ..++++++.+ .+. ...+ +.+++.|.++..++++.++.++ ++.+.+++
T Consensus 243 vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 322 (404)
T PTZ00376 243 FLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGR 322 (404)
T ss_pred EEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999983 2377655543 322 2333 4577899999999987654333 35667788
Q ss_pred HHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEE
Q 019899 235 IKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~ 310 (334)
++++++.+.+.|++.+ +.+..+.+|+|+|++++ .+++.+|++++||.+.|| + |++
T Consensus 323 ~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-----------~~~~~~L~~~~~v~v~p~--------~--Ris 381 (404)
T PTZ00376 323 IQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT-----------KEQVERLIEKYHIYLLDN--------G--RIS 381 (404)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC-----------HHHHHHHHHhCCEeecCC--------C--eEE
Confidence 9999999999999875 44567899999999874 478889899889999987 1 999
Q ss_pred ecCCCcccHHHHHHHHHHHHH
Q 019899 311 FTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 311 ~~~~~~~~l~~~l~~l~~~~~ 331 (334)
++..++++++.++++|++++.
T Consensus 382 ~~~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 382 VAGLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred EeccCHHhHHHHHHHHHHHHh
Confidence 977899999999999999875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=307.96 Aligned_cols=298 Identities=20% Similarity=0.254 Sum_probs=236.4
Q ss_pred hhhhhhhhcCCCCCCCCcE--EEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPSQI--VLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i--~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
++|+.+..+ ..+++++| ++|+|+++|+..+++.+ +++||+|++++|+|+.+...++ ..|.+++.+|+.+++++
T Consensus 79 a~~~~~~~~--~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~-~~g~~~v~v~~~~~~~~ 155 (396)
T PRK09257 79 QELLFGADS--PALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFE-AAGLEVKTYPYYDAATK 155 (396)
T ss_pred HHHhcCCCC--cccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHH-HcCCcEEEEeccccccC
Confidence 455543211 23478877 99999999999998766 5899999999999999999999 99999999998444567
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC-CCCcchhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG-NEEFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~-~~~~~~~~~~~ 156 (334)
++|++.++++++.. ..+..++++++|+||||.+++.+++++|+++|++|+++||+||+|+++.++ +....++..+.
T Consensus 156 ~~d~~~l~~~~~~~---~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 232 (396)
T PRK09257 156 GLDFDAMLADLSQA---PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFA 232 (396)
T ss_pred ccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHH
Confidence 99999999988742 113466667999999999999999999999999999999999999998874 22234444443
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEee--cCHHH----HHHHHHh-h-cccCCChHHHHHHHHhhCChHH---HH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYS--YNESV----LAAAKKL-T-RFCSISAPTQRLLISMLSDTKF---IQ 225 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~--~~~~~----~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~---~~ 225 (334)
+ ..+++++++||||.++++|+|+||+++ ++++. ++.+... . ...+.+.+.|.++..++...++ ..
T Consensus 233 ~----~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 308 (396)
T PRK09257 233 A----AGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWE 308 (396)
T ss_pred h----cCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHH
Confidence 3 146799999999999988999999973 34443 3333332 2 2344688899999999987643 25
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
+++.+++++++++++.+.+.|++.+ +.+..+.+|+|+|++++ .+++.++++++||.+.|.
T Consensus 309 ~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~-----------~~~~~~l~~~~~V~~~p~----- 372 (396)
T PRK09257 309 AELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLT-----------PEQVDRLREEFGVYAVGS----- 372 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCC-----------HHHHHHHHHcCCEEEcCC-----
Confidence 6778899999999999999999874 66778999999999875 256777788899999872
Q ss_pred CCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 302 IEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 302 ~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
+ |++++..+++++++++++|++++
T Consensus 373 ---~--ri~~~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 373 ---G--RINVAGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred ---C--eEEEeeCCHHHHHHHHHHHHhhC
Confidence 1 99998789999999999998753
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=305.77 Aligned_cols=287 Identities=22% Similarity=0.288 Sum_probs=237.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||.|++++|+|+.+..... ..|.+++.+++..++++.++.+++
T Consensus 70 lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~-~~g~~~~~~~l~~~~~~~~~~~~~ 148 (357)
T PRK14809 70 LTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSAR-YHHGEVREYPVSKADDFEQTADTV 148 (357)
T ss_pred HHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-HcCCeEEEEecccCcCCCcCHHHH
Confidence 5556666677899999999999999999999999999999999999998887777 789999999986556777888777
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
.+..+ +++++++++|+||||.++|.+++++++++|++ +++||+||+|.++.+.+. ....+.. .+
T Consensus 149 ~~~~~-------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~---~~~~~~~-----~~ 212 (357)
T PRK14809 149 LDAYD-------GERIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPS---AVALVEE-----RD 212 (357)
T ss_pred HHhhc-------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCch---hHHHHhh-----CC
Confidence 66542 57899999999999999999999999999864 789999999999876431 1222222 57
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
++++++||||.+|++|+|+||+++ ++++++.+.+....++.+++.|.++..++.. .+++.+.++.++++++.+.+
T Consensus 213 ~vi~~~SfSK~~~~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~ 287 (357)
T PRK14809 213 DVAVLRTFSKAYGLAGLRLGYAVV-PEEWADAYARVNTPFAASELACRAGLAALDD----DEHVERTVETARWAREYIRE 287 (357)
T ss_pred CEEEEecchhHhcCcchhheeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998 7888899888777788899999988888875 34556677788888888988
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|+... .+.+|+|+|++++. ..++.+. ++++||.+.||..|+. ++++|++++ ++++++++++
T Consensus 288 ~L~~~~----~~~~g~f~~~~~~~---------~~~~~~~-l~~~gv~v~~g~~f~~--~~~iRls~~--~~~~~~~~l~ 349 (357)
T PRK14809 288 ELDAPT----WESAGNFVLAEVGD---------ASAVAEA-AQERGVIVRDCTSFGL--PECIRITCG--TREETERAVE 349 (357)
T ss_pred HhcCcc----CCCCCCEEEEECCC---------HHHHHHH-HHHCCEEEEECccCCC--CCeEEEecC--CHHHHHHHHH
Confidence 886542 25678899998752 3577777 5668999999999874 579999987 5789999999
Q ss_pred HHHHHHH
Q 019899 325 RIQKVAE 331 (334)
Q Consensus 325 ~l~~~~~ 331 (334)
+|+++++
T Consensus 350 ~L~~~l~ 356 (357)
T PRK14809 350 VLNEVLA 356 (357)
T ss_pred HHHHHhc
Confidence 9999875
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=300.27 Aligned_cols=289 Identities=15% Similarity=0.229 Sum_probs=232.3
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
.-+++.+++.+++++++|++|+|+++++..++.. +++| .|++++|+|+.+...++ ..|.+++.+|++. +..|.+
T Consensus 43 ~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~-~~~~-~vv~~~P~y~~y~~~~~-~~G~~v~~vp~~~---~~~~~~ 116 (332)
T PRK06425 43 TDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY-INVG-NIIIVEPNFNEYKGYAF-THGIRISALPFNL---INNNPE 116 (332)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-hCCC-cEEEeCCChHHHHHHHH-HcCCeEEEEeCCc---ccCcHH
Confidence 3466777777889999999999999999999974 5676 47777999999999999 9999999999742 344544
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
.++ . .+++++++++|+||||.+++.+++++|+++|++++++||+||+|.+|.+.+. .+...+.. .
T Consensus 117 ~l~----~-----~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~--~~~~~~~~----~ 181 (332)
T PRK06425 117 ILN----N-----YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA--EEDVLLNR----S 181 (332)
T ss_pred HHh----h-----cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc--hhHHHHhc----c
Confidence 333 2 2789999999999999999999999999999999999999999999886532 23333332 1
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
.+++++++||||.+|++|+|+||+++ ++++++.+.+....+..+...+.++. ... .+.+..+.++.++++++++
T Consensus 182 ~~~vi~~~SfSK~~~l~GlRiGy~v~-~~~li~~l~~~~~~~~~~~~~~~~l~----~~~-~~~~~~~~~~~~~~~r~~l 255 (332)
T PRK06425 182 YGNVIIGRSLTKILGIPSLRIGYIAT-DDYNMKISRKITEPWSVCDPAIDFIR----SID-LDYVAKHSLDIMENERSYL 255 (332)
T ss_pred CCCEEEEeecHHhcCCchhhheeeec-CHHHHHHHHHcCCCCccCHHHHHHHH----Hhh-hHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999 78899998887666666655433322 222 2445567788999999999
Q ss_pred HHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 243 VAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 243 ~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
.+.|++.|+.+..+.+|.|+|++++. +.++.+.|++ +||.+.||..|+...++++|++++ ++++.+++
T Consensus 256 ~~~L~~~g~~~~~~~~g~f~~~~~~~---------~~~~~~~l~~-~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l 323 (332)
T PRK06425 256 INNLEAMGFRAAGDPSANFITFMIPD---------AHDFYSYLLK-NGILVRLLDDYECLGEQYIRIAIR--RRSFNIKL 323 (332)
T ss_pred HHHHHHCCCEECCCCCceEEEEEcCC---------HHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHH
Confidence 99999988887655577789998861 3578888665 799999999886544689999998 78899999
Q ss_pred HHHHHHHH
Q 019899 323 IERIQKVA 330 (334)
Q Consensus 323 l~~l~~~~ 330 (334)
+++|++++
T Consensus 324 ~~al~~~~ 331 (332)
T PRK06425 324 VNALRNFL 331 (332)
T ss_pred HHHHHHHh
Confidence 99998875
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=306.49 Aligned_cols=295 Identities=19% Similarity=0.298 Sum_probs=240.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||.|+++.|+|+.+...++ ..|.+++.++++ .++++|++++
T Consensus 76 lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~-~~g~~~~~v~~~--~~~~~~~~~l 152 (371)
T PRK05166 76 LREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPT-MMGARVERVTVT--PDLGFDLDAL 152 (371)
T ss_pred HHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-HcCCeEEEeecC--CCCCCCHHHH
Confidence 4555555667888999999999999999999999999999999999999988888 899999999984 3568999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++++ +++++++++|+||||.++|.+++++|+++|++ +++||+||+|.++.+++. ..+......+ ..+
T Consensus 153 ~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~---~~~ 221 (371)
T PRK05166 153 CAAVAR------APRMLMFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDD-YPSALTLLKA---RGL 221 (371)
T ss_pred HHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcC-cccHHHHHhh---cCC
Confidence 998876 67999999999999999999999999998864 889999999999886433 2233332221 145
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
++++++||||.+|++|+|+||++++++++++.+.+....++.+.+.|.++..++... +++++.++.++++++.+.+
T Consensus 222 ~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~ 297 (371)
T PRK05166 222 PWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDE----EHLAKGVALALAERERLKK 297 (371)
T ss_pred CEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999887688899988877777888999998888887654 3456667788888899999
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|++.|+.+ .+.+|+|+|++++. ++.++...|++ +||.+.||..++ .++++|++++ ++++.+++.+
T Consensus 298 ~L~~~g~~~-~p~~g~fl~~~~~~--------~~~~l~~~l~~-~gi~v~p~~~~~--~~~~iRi~~~--~~~~~~~l~~ 363 (371)
T PRK05166 298 ELAEMGYRI-APSRANFLFFDARR--------PASAVAEALLR-QGVIVKPWKQPG--FETFIRVSIG--SPEENDHFVA 363 (371)
T ss_pred HHHHCcCee-CCCcCCEEEEeCCC--------CHHHHHHHHHH-CCeEEecCCCCC--CCCeEEEEcC--CHHHHHHHHH
Confidence 999888875 45567889998753 24678888665 799999987654 3789999998 6667777777
Q ss_pred HHHHHHH
Q 019899 325 RIQKVAE 331 (334)
Q Consensus 325 ~l~~~~~ 331 (334)
.|+.++.
T Consensus 364 ~l~~i~~ 370 (371)
T PRK05166 364 ALDKVLE 370 (371)
T ss_pred HHHHHhh
Confidence 7776653
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=304.95 Aligned_cols=296 Identities=21% Similarity=0.299 Sum_probs=240.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCC-CeEEecCCCCCChhhhhhhccCcEEEEEeCCC-CCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHG-NALLVPSPYYPGFDRDIRFRTGVELIPVHCRS-TDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~g-d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~~~~~ 82 (334)
+++.+++.+++++++|++|+|+++++..++.+++++| |+|++++|+|..+...++ ..|.+++.+|+.+ ++++.+|++
T Consensus 64 lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~~ 142 (364)
T PRK04781 64 LRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCAR-LQNAPLVEVPLVDGADGFHADVP 142 (364)
T ss_pred HHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-HcCCEEEEEecCCCccCCCcCHH
Confidence 4555666677899999999999999999999999888 799999999998888777 8899999999843 356778999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++.+.+.. .+++++++++|+||||.+++.+++.+++++|+ ++++||+||+|.+|.+.. +...+.. .
T Consensus 143 ~l~~~~~~-----~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~----~~~~~~~----~ 208 (364)
T PRK04781 143 AIVAAALA-----SNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVP----SAVGLLA----R 208 (364)
T ss_pred HHHHHHhc-----cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCc----chHHHHh----h
Confidence 98766543 27899999999999999999999999999885 589999999999987532 1222222 1
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
.+++++++||||.+|++|+|+||+++ ++++++.+.+....++.+++.|.++..++...++ ++..+..+.++++++.+
T Consensus 209 ~~~vi~~~SfSK~~gl~GlRvGy~v~-~~~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~r~~l 285 (364)
T PRK04781 209 YDNLAVLRTLSKAHALAAARIGSLIA-NAELIAVLRRCQAPYPVPTPCAALAEQALSAPAL--AVTARRVAEVRAERERL 285 (364)
T ss_pred CCCEEEEecChhhcccccceeeeeeC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998 8899999998888888999999988888876531 23344555778899999
Q ss_pred HHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHH
Q 019899 243 VAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPL 321 (334)
Q Consensus 243 ~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~ 321 (334)
.+.|+++ ++....|.+|+|+|++++. ..++.+. ++++||.+.||..|+. .++++||+++ ++++.++
T Consensus 286 ~~~L~~~~~~~~~~p~~g~f~~~~~~~---------~~~~~~~-l~~~gI~v~~~~~~~~-~~~~~Ris~~--~~~~~~~ 352 (364)
T PRK04781 286 HAALAQLPGVRRVYPSQGNFLLVRFDD---------AEAAFQA-LLAAGVVVRDQRAAPR-LSDALRITLG--TPEQNDR 352 (364)
T ss_pred HHHHHhCCCCCeECCCCCcEEEEEcCC---------HHHHHHH-HHHCCeEEeeCCCCCC-CCCeEEEeCC--CHHHHHH
Confidence 9999887 6654467778999999863 2466676 5568999999987643 3679999998 7888899
Q ss_pred HHHHHHHHHH
Q 019899 322 VIERIQKVAE 331 (334)
Q Consensus 322 ~l~~l~~~~~ 331 (334)
+++.|+++..
T Consensus 353 l~~al~~~~~ 362 (364)
T PRK04781 353 VLAALQRTQA 362 (364)
T ss_pred HHHHHHHHHh
Confidence 9999987643
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=307.31 Aligned_cols=290 Identities=19% Similarity=0.302 Sum_probs=241.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||+|++++|+|+.+...+. ..|.+++.+|+. ++.+|++++
T Consensus 69 lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~-~~g~~~~~~~~~---~~~~d~~~l 144 (359)
T PRK03158 69 LRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAI-IEGAEVREVPLK---DGGHDLEAM 144 (359)
T ss_pred HHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHH-HcCCeEEEEecC---CCCcCHHHH
Confidence 4555555667888999999999999999999999999999999999999988888 889999999984 457899999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++++ +++++++++|+||||.+++.+++.++++.|. +++++|+||+|.++.+.+.....+..+.. .+
T Consensus 145 ~~~~~~------~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~ 212 (359)
T PRK03158 145 LKAIDE------QTKIVWICNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEK-----YE 212 (359)
T ss_pred HHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHh-----cC
Confidence 988865 7899999999999999999988888888764 69999999999998875432222222222 57
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.||||.+|++|+|+||+++ ++++++.+......++.|++.|.++..+++..++ ..+.++.++++++.+.+
T Consensus 213 ~vi~~~S~SK~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~ 287 (359)
T PRK03158 213 NLIVLRTFSKAYGLAALRVGYGIA-SEELIEKLNIARPPFNTTRIAQYAAIAALEDQAF----LKECVEKNAEGLEQYYA 287 (359)
T ss_pred CEEEEEechHhhcCcchhhehhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998 8899999988777788899999999999976443 44556667788888889
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|++.++.+.++ +|+|+|++++. +..++.+.|++ +||.+.||..|+. ++++|++++ ++++.+++++
T Consensus 288 ~l~~~~~~~~~~-~g~~i~~~~~~--------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRi~~~--~~~~~~~l~~ 353 (359)
T PRK03158 288 FCKEYGLFYYPS-QTNFIFVDTGR--------DANELFEALLK-KGYIVRSGAALGF--PTGVRITIG--LKEQNDKIIE 353 (359)
T ss_pred HHHHCCCeeCCC-cCcEEEEECCC--------CHHHHHHHHHH-CCeEEeeCCCCCC--CCeEEEecC--CHHHHHHHHH
Confidence 998888776544 57789998752 24678888664 8999999998863 689999998 8999999999
Q ss_pred HHHHH
Q 019899 325 RIQKV 329 (334)
Q Consensus 325 ~l~~~ 329 (334)
+|+++
T Consensus 354 al~~~ 358 (359)
T PRK03158 354 LLKEL 358 (359)
T ss_pred HHHHh
Confidence 99875
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=303.42 Aligned_cols=295 Identities=18% Similarity=0.305 Sum_probs=239.1
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
.+++.+++.+++++++|++|+|+++++..++..+ .+|+ +++++|+|..+...++ ..|.+++.+|+.+++++.+| ++
T Consensus 59 ~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~-~~ 134 (356)
T PRK08056 59 HLHQALARHHQVPASWILAGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQ-QVGCEIRRYSLREADGWQLT-DA 134 (356)
T ss_pred HHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHH-HcCCeEEEEecccccCCCcc-HH
Confidence 3455566667789999999999999999999887 5675 7788999999998888 89999999998655666666 45
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++.+++ +++++++++|+||||.+++.+++++|+++|++++++||+||+|.++.+.+..+.+. +.. .
T Consensus 135 ~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~-----~ 201 (356)
T PRK08056 135 ILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LAD-----N 201 (356)
T ss_pred HHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hcc-----C
Confidence 5555543 78999999999999999999999999999999999999999999987654322222 211 4
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
++++++.|+||++|++|+|+||++++++++++.+++....++.+.+.+.++..++...+ +..+.++.++++++++.
T Consensus 202 ~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l~ 277 (356)
T PRK08056 202 PHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDRA----YQQATWQWLAEEGARFY 277 (356)
T ss_pred CCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999986678888887766667788888888888886533 34667788899999999
Q ss_pred HHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 244 AGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 244 ~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
+.|+++ ++.+..+ +++|+|++++.. ..++...|+ ++||.+.||..|+...++++||+++ ++++.+.+
T Consensus 278 ~~L~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l 345 (356)
T PRK08056 278 QALCALPLLTVWPG-RANYLFLRCERP--------DIDLQRALL-TQRILIRSCANYPGLDSRYYRVAIR--SAAENERL 345 (356)
T ss_pred HHHhcCCCcEEcCC-CCcEEEEEcCCC--------hHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHH
Confidence 999887 6665544 678899998742 247888866 4899999999885445679999998 78899999
Q ss_pred HHHHHHHHH
Q 019899 323 IERIQKVAE 331 (334)
Q Consensus 323 l~~l~~~~~ 331 (334)
++.|+++++
T Consensus 346 ~~~l~~~~~ 354 (356)
T PRK08056 346 LAALRNVLT 354 (356)
T ss_pred HHHHHHHHc
Confidence 999988764
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=302.83 Aligned_cols=296 Identities=19% Similarity=0.273 Sum_probs=236.5
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCc
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVK 97 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 97 (334)
++|++|+|+++++..++.+++++||+|++++|+|+.+...+....|.+++.+|+.. +++++|++++++.++... ...
T Consensus 70 ~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~--~~~ 146 (388)
T PRK08637 70 SLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAY--NKG 146 (388)
T ss_pred ceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccC-CCCcCCHHHHHHHHHhhc--cCC
Confidence 68999999999999999999999999999999999999875425799999999842 334789999999887210 114
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-----cCcEEEEeccccccccCCCCcchhh-hhhhccccCCCcE--EEE
Q 019899 98 VRGILICNPANPVGNIIPRETLYELLDFARE-----KNIHVISDEIYGGSIFGNEEFVSMA-EILEAEEVDKDRV--HII 169 (334)
Q Consensus 98 ~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~-----~~~~vi~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~ 169 (334)
..++++++|+||||.+++.+++++|+++|++ |+++||+||+|.++.|++....++. .+.+ ..+++ +++
T Consensus 147 ~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~----~~~~vi~i~~ 222 (388)
T PRK08637 147 KVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALAN----LHSNILAVKL 222 (388)
T ss_pred CEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhc----ccccceEEEe
Confidence 5567888899999999999999999998875 8999999999999998765444432 2222 13564 445
Q ss_pred ecccccCCCCCceEEEEeec-----CHHHHHHHHHh-----h-cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 170 YGLSKDLSLPGFRTGVIYSY-----NESVLAAAKKL-----T-RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 170 ~s~sK~~~~~g~r~g~i~~~-----~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.|+||.++++|+|+||++++ ++++.+.+... . ..++.|.+.|.++..++.+..+ ..+..+.+..++++
T Consensus 223 ~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r 301 (388)
T PRK08637 223 DGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKER 301 (388)
T ss_pred ccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHH
Confidence 69999999999999999964 36777777542 1 2357889999999999987654 45567777789899
Q ss_pred HHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCC
Q 019899 239 YDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSL 314 (334)
Q Consensus 239 ~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~ 314 (334)
++.+.+.|++. ++.+..+.+|+|+|++++. .++.+++..+++++||.+.+. .++++|++++..
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~ 368 (388)
T PRK08637 302 YEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG-------VDAEELRVHLLEKYGIGTIAL------NETDLRIAFSCV 368 (388)
T ss_pred HHHHHHHHHhhCCCCCcccccccceEEEEecCCh-------HHHHHHHHHHhhhcceEEEec------cCCceEEEeecC
Confidence 88888888765 5777788999999999973 144688898777789988742 256899999967
Q ss_pred CcccHHHHHHHHHHHHHHcC
Q 019899 315 THEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~~~ 334 (334)
+++++++++++|++++++++
T Consensus 369 ~~~~i~~~~~~l~~~~~~~~ 388 (388)
T PRK08637 369 EEEDIPELFDSIYKAIKDLR 388 (388)
T ss_pred CHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999998765
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=302.76 Aligned_cols=295 Identities=20% Similarity=0.264 Sum_probs=233.2
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCC-eEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGN-ALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd-~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
|+|+.++.+..+.+++++|++|+|+++++..++.+++.+|| +|++++|+|+.+...++ ..|.+++.++++ ++++++|
T Consensus 76 a~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~-~~g~~~~~~~~~-~~~~~~d 153 (374)
T PRK02610 76 AEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQ-TLGIPVVRVGRD-PETFEID 153 (374)
T ss_pred HHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHH-HcCCEEEEecCC-cccCCCC
Confidence 44554433223558899999999999999988888877886 89999999999999998 999999999974 3458999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++.. ..+++++++++|+||||.+++.++++++.++| ++++||+||+|.+|.+. .....+..
T Consensus 154 ~~~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~----~~~~~~~~--- 222 (374)
T PRK02610 154 LAAAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQT----TLVGELAQ--- 222 (374)
T ss_pred HHHHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCcc----chHHHHhc---
Confidence 999999887411 12789999999999999999999999999876 49999999999987542 12222222
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
.+++++++||||.+|++|+|+||+++ ++++++.+.+....++.+.+.|.++..++...+ .+.+.++...+ .++
T Consensus 223 --~~~~ivi~SfSK~~g~~GlRiG~~v~-~~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~-~r~ 295 (374)
T PRK02610 223 --HPNWVILRTFSKAFRLAAHRVGYAIG-HPELIAVLEKVRLPYNLPSFSQLAAQLALEHRQ---ELLAAIPEILQ-ERD 295 (374)
T ss_pred --CCCEEEEEecchhccCcccceeeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH---HHHHHHHHHHH-HHH
Confidence 46788899999999999999999998 889999998877777889999999988887643 33344444444 467
Q ss_pred HHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccH
Q 019899 241 SFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDI 319 (334)
Q Consensus 241 ~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l 319 (334)
.+.+.|+++ ++.+ .|.+|+|+|++++... +..++.+. ++++||.+.++ ++++|++++ +++++
T Consensus 296 ~l~~~L~~~~~~~~-~p~~g~f~~~~l~~~~------~~~~~~~~-l~~~gi~v~~~-------~~~lRls~~--~~~~~ 358 (374)
T PRK02610 296 RLYQALQELPQLRV-WPSAANFLYLRLSQDA------ALAALHQA-LKAQGTLVRHT-------GGGLRITIG--TPEEN 358 (374)
T ss_pred HHHHHHHhCCCcEe-CCCcceEEEEeCCCCC------CHHHHHHH-HHHCCEEEEeC-------CCeEEEeCC--CHHHH
Confidence 788888776 6654 4778999999998642 33577777 46689999753 468999998 46778
Q ss_pred HHHHHHHHHHHHHc
Q 019899 320 PLVIERIQKVAETC 333 (334)
Q Consensus 320 ~~~l~~l~~~~~~~ 333 (334)
++++++|+++++++
T Consensus 359 ~~~l~~l~~~l~~~ 372 (374)
T PRK02610 359 QRTLERLQAALTQL 372 (374)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998765
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=295.87 Aligned_cols=293 Identities=26% Similarity=0.427 Sum_probs=248.9
Q ss_pred hhhhhcCCCC-CCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVS-FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.++..++ +++++|++++|+.+.+..++++++.+||+|+++.|+|..|...++ ..|.+++.++.. + +.+|++.
T Consensus 62 l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~-~~g~~~~~v~~~--~-~~~d~~~ 137 (356)
T COG0079 62 LRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQ-LAGAEVVKVPLK--E-FRLDLDA 137 (356)
T ss_pred HHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHH-hcCCeEEEeccc--c-cccCHHH
Confidence 4455555566 788999999999999999999999999999999999999999999 999999999984 3 8999999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+.+++++ ++++|++||||||||..++.++++++++.+.+ +.+|++||+|.+|.- .+...+.. ..
T Consensus 138 ~~~~~~~------~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~-----~~~~~l~~----~~ 201 (356)
T COG0079 138 ILAAIRD------KTKLVFLCNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIEFSP-----ESSLELLK----YP 201 (356)
T ss_pred HHHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCC-----chhhhhcc----CC
Confidence 9999987 79999999999999999999999999999888 999999999998664 22222221 17
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
++++++.||||.+|++|+|+||+++ ++++++.+.+.+.+|+.|.+++.++.+++.+. +++.+..+.+.+.++++.
T Consensus 202 ~nlivlRTfSKa~gLAGlRlGy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~----~~~~~~~~~~~~~r~rl~ 276 (356)
T COG0079 202 PNLIVLRTFSKAFGLAGLRVGYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDA----DYLEESVERIREERERLY 276 (356)
T ss_pred CCEEEEEecHHhhhcchhceeeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998 99999999999999999999999999999885 456778889999999999
Q ss_pred HHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHH
Q 019899 244 AGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVI 323 (334)
Q Consensus 244 ~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l 323 (334)
+.|+.+|+.-+.|....|++++++.. . +..+.+.|++ +||.++.... ....++++|++++ ++++.++++
T Consensus 277 ~~l~~~~~~~v~pS~aNFvlv~~~~~------~-~~~l~~~L~~-~giivR~~~~-~~~~~~~lRitvg--t~een~~ll 345 (356)
T COG0079 277 AALKALGLFGVFPSQANFVLVRVPDA------E-AAALAEALLK-KGILVRDCSS-VGLLPGYLRITVG--TPEENDRLL 345 (356)
T ss_pred HHHHhCCCCeecCCCCcEEEEECCCc------c-HHHHHHHHHH-CCEEEEeCCC-CCCCCCeEEEEeC--CHHHHHHHH
Confidence 99999985523344466677888861 1 2467777555 7999998765 3334679999999 888889999
Q ss_pred HHHHHHHHHc
Q 019899 324 ERIQKVAETC 333 (334)
Q Consensus 324 ~~l~~~~~~~ 333 (334)
++|+++++..
T Consensus 346 ~AL~~~~~~~ 355 (356)
T COG0079 346 AALREVLKGL 355 (356)
T ss_pred HHHHHHHhcc
Confidence 9999988753
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=299.36 Aligned_cols=288 Identities=24% Similarity=0.370 Sum_probs=231.6
Q ss_pred ChhhhhhhhcCCCC-CCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc
Q 019899 1 MAGFMSQVLGQAVS-FDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 1 i~~~~~~~~~~~~~-~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 78 (334)
+++|+.++.+ +. +++++|++|+|+++++..++..+ +++||.|++++|+|+.+...++ ..|.+++.++
T Consensus 65 ia~~~~~~~~--~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~v~-------- 133 (357)
T TIGR03539 65 IVDWLERRRG--VPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGAL-LAGATPVAAD-------- 133 (357)
T ss_pred HHHHHHHhcC--CCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHH-hcCCEEeccC--------
Confidence 3566666555 54 88999999999999999998887 7999999999999999998888 8899887774
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+++.+. + .+++++++++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+.+..... +...
T Consensus 134 -~~~~l~----~-----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~---~~~~ 200 (357)
T TIGR03539 134 -DPTELD----P-----VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSI---LDPR 200 (357)
T ss_pred -ChhhcC----c-----cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccc---eecc
Confidence 122222 1 27899999999999999999999999999999999999999999988876532211 1110
Q ss_pred -cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 159 -EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 159 -~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
...+.+++++++||||.++++|+|+||+++ ++++++.+.+... .++.+.+.|.++..++... .+..+.++.+
T Consensus 201 ~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~ 275 (357)
T TIGR03539 201 VCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG-DPALVAELLTVRKHAGLMVPAPVQAAMVAALGDD----GHVAEQKARY 275 (357)
T ss_pred cCCCccccEEEEeccccccCCCceeEEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCH----HHHHHHHHHH
Confidence 001246799999999999999999999998 7888888876543 3567889999999998763 3346677888
Q ss_pred HHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++++.+.+.|++.|+.+..+.+|+++|++++. +..++... ++++||.+.||..|+...++++|++++ .+
T Consensus 276 ~~~~~~~~~~L~~~g~~~~~p~~~~~~~~~~~~--------~~~~~~~~-l~~~gV~v~pg~~f~~~~~~~iRis~~-~~ 345 (357)
T TIGR03539 276 AARRAQLKPALEKAGFRIDHSEAGLYLWATRGE--------DAWDTVDR-LAELGILVAPGDFYGPAGSQHVRVALT-AT 345 (357)
T ss_pred HHHHHHHHHHHHHcCCCCcCCCccEEEEEECCC--------CHHHHHHH-HHhCCEEECCccccCCCCCCeEEEEec-CC
Confidence 899999999999889888889999999998753 23467766 566899999999887655689999999 47
Q ss_pred cccHHHHHHHHH
Q 019899 316 HEDIPLVIERIQ 327 (334)
Q Consensus 316 ~~~l~~~l~~l~ 327 (334)
++++++++++|+
T Consensus 346 ~~~i~~~~~~l~ 357 (357)
T TIGR03539 346 DERIAAAVARLT 357 (357)
T ss_pred HHHHHHHHHhhC
Confidence 788998888763
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=299.69 Aligned_cols=293 Identities=20% Similarity=0.295 Sum_probs=228.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc---cccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF---AFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~---~~~~ 81 (334)
+++.+++.+++++++|++|+|+++++..++.++. +||.|++++|+|+.+...++ ..|.+++.+++++++++ ..++
T Consensus 62 Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~~~~ 139 (360)
T PRK07392 62 LRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRALR-AFGATVKELPLPLDQPSPGLTLRL 139 (360)
T ss_pred HHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHHHH-HcCCeEEEEecccccCCcccccCH
Confidence 4555666667899999999999999999998875 68899999999999999999 89999999998654443 2344
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++.. .+++++++++|+||||.+++.++ |.++++++++ +|+||+|.+|.+++. ..+......
T Consensus 140 ~~~~~~~-------~~~~~~~l~nP~NPTG~~~~~~~---l~~l~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~---- 203 (360)
T PRK07392 140 QTLPPQL-------TPNDGLLLNNPHNPTGKLWSREA---ILPLLEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLA---- 203 (360)
T ss_pred HHHHHhc-------cCCCEEEEeCCCCCCCCCcCHHH---HHHHHHHCCE-EEEECchhhhccCcc-ccchHHHhh----
Confidence 5444322 26789999999999999999554 5555667786 666999999987653 223322222
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (334)
..+++++++||||.+|++|+|+||+++ ++++++.+......++.|.+.|.++..++++.++ ....++.+++++++
T Consensus 204 ~~~~vi~i~S~SK~~~l~GlRiG~~v~-~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~ 278 (360)
T PRK07392 204 EYPNLIILRSLTKFYSLPGLRLGYAIA-HPDRLQRWQQWRDPWPVNGLAAAAAIAALADRDF----QQQTWAWLPPAREA 278 (360)
T ss_pred cCCCEEEEEechhhhcCCchheeeeeC-CHHHHHHHHhhCCCCCCCHHHHHHHHHHhccHHH----HHHHHHHHHHHHHH
Confidence 157899999999999999999999998 7888888887776688999999999999987443 34455668888899
Q ss_pred HHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHH
Q 019899 242 FVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIP 320 (334)
Q Consensus 242 ~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~ 320 (334)
+.+.|+.+ |+.+.. .+++|+|++++. ++.++...+++++||.+.||..|+...++++||+++ ++++.+
T Consensus 279 l~~~L~~~~~~~~~~-~~~~fl~~~~~~--------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~ 347 (360)
T PRK07392 279 LFQGLASLPGLTPLP-SAANFLLVQSQG--------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVR--TEAENQ 347 (360)
T ss_pred HHHHHHhCCCcEECC-CCCCEEEEEcCC--------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeC--CHHHHH
Confidence 99999876 666544 678899998864 246788887888999999999997655689999998 455556
Q ss_pred HHHHHHHHHHH
Q 019899 321 LVIERIQKVAE 331 (334)
Q Consensus 321 ~~l~~l~~~~~ 331 (334)
++.+.|.+++.
T Consensus 348 ~l~~al~~~~~ 358 (360)
T PRK07392 348 RLLEALAAILA 358 (360)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=301.81 Aligned_cols=289 Identities=20% Similarity=0.293 Sum_probs=237.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||+|++++|+|+.|...++ ..|.+++.++. ++++.+|++++
T Consensus 91 lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~-~~g~~~~~v~~--~~~~~~d~~~l 167 (380)
T PLN03026 91 LRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAA-VNGAEVIKVPR--TPDFSLDVPRI 167 (380)
T ss_pred HHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-HcCCEEEEeec--CCCCCcCHHHH
Confidence 5566666677899999999999999999999999999999999999998888887 88999999997 34578999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
+++++. .+++++++++|+||||.+++.+++.++++.+ ++||+||+|.+|.+.+. . ...+.. .+
T Consensus 168 ~~~~~~-----~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~~-~--~~~~~~-----~~ 230 (380)
T PLN03026 168 VEAVET-----HKPKLLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQES-R--MKWVKK-----YD 230 (380)
T ss_pred HHHHhc-----cCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCcc-h--HHHHHh-----CC
Confidence 998843 2789999999999999999988887777643 89999999998876432 1 111222 67
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.||||.+|++|+|+||+++ ++++++.+.+....++.+.++|.++..++...+ ++.+.++.++++++++.+
T Consensus 231 ~viv~~SfSK~~glaGlRiGy~~~-~~~~i~~l~~~~~~~~~~~~~q~aa~~aL~~~~----~~~~~~~~~~~~r~~l~~ 305 (380)
T PLN03026 231 NLIVLRTFSKRAGLAGLRVGYGAF-PLSIIEYLWRAKQPYNVSVAAEVAACAALSNPK----YLEDVKNALVEERERLFG 305 (380)
T ss_pred CEEEEecchHhhcCccccceeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhhCHH----HHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998 888999998887778899999999999987643 456677888999999999
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|+++++....+.+++|+|++++... ++.++...|+ ++||.++++..++ .++++||+++ ++++.+++++
T Consensus 306 ~L~~~~~~~~~p~~~~f~~~~~~~~~------~~~~~~~~l~-~~gI~v~~~~~~~--~~~~lRis~~--~~~~~~~l~~ 374 (380)
T PLN03026 306 LLKEVPFLEPYPSDANFILCRVTSGR------DAKKLKEDLA-KMGVMVRHYNSKE--LKGYIRVSVG--KPEHTDALME 374 (380)
T ss_pred HHHHCCCCeECCCCCeEEEEECCCCC------CHHHHHHHHH-HCCeEEEECCCCC--CCCEEEEecC--CHHHHHHHHH
Confidence 99988643346678889999987532 3467888866 6899999876532 3679999998 6778888888
Q ss_pred HHHHH
Q 019899 325 RIQKV 329 (334)
Q Consensus 325 ~l~~~ 329 (334)
.|+++
T Consensus 375 al~~~ 379 (380)
T PLN03026 375 ALKQL 379 (380)
T ss_pred HHHHh
Confidence 88753
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=300.09 Aligned_cols=295 Identities=20% Similarity=0.262 Sum_probs=242.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||.|++++|+|+.+...+. ..|.+++.+|++ +..+|++++
T Consensus 72 Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-~~g~~~~~vp~~---~~~~~~~~l 147 (369)
T PRK08153 72 LRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVA-GFGGRLVTVPYR---DDREDLDAL 147 (369)
T ss_pred HHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHH-HcCCeEEEeeCC---CCCCCHHHH
Confidence 4555666667889999999999999999999999999999999999999998888 889999999973 235788888
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++.+.+. +++++++++|+||||.++|.+++.+++++|+ ++++||+||+|..+.+++. ..++. . ..+
T Consensus 148 ~~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~~~---~----~~~ 213 (369)
T PRK08153 148 LDAARRE-----NAPLVYLANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA-APPID---T----DDP 213 (369)
T ss_pred HHHhccc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc-chhhh---h----cCC
Confidence 8776542 7899999999999999999999999999887 5999999999999876542 22222 1 156
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.||||.+|++|+|+||+++ ++++++.+.+....++.+++.|.++..++++. +++.+.++.++++++.+.+
T Consensus 214 ~~i~~~SfSK~~g~~GlRiG~~v~-~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~~~~ 288 (369)
T PRK08153 214 NVIRMRTFSKAYGLAGARVGYAIG-APGTIKAFDKVRNHFGMNRIAQAAALAALKDQ----AYLAEVVGKIAAARDRIAA 288 (369)
T ss_pred CEEEEecchHhccCcchheeeeec-CHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998 88899999887777889999999999999753 3456678888899999999
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc-CCCCcCCCCCCeEEEEecCCCcccHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT-PGSACHCIEPGWFRCCFTSLTHEDIPLVI 323 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-~g~~~~~~~~~~iRi~~~~~~~~~l~~~l 323 (334)
.|++.|+... +.+++|+|++++... ..+.++.+.|++ +||.+. |+... .++++|++++ ++++++.++
T Consensus 289 ~L~~~g~~~~-p~~~~f~~~~~~~~~-----~~a~~l~~~l~~-~Gi~v~~p~~~~---~~~~iRis~~--~~~~~~~~~ 356 (369)
T PRK08153 289 IARANGLTPL-PSATNFVAIDCGRDG-----AFARAVLDGLIA-RDIFVRMPGVAP---LDRCIRVSCG--PDEELDLFA 356 (369)
T ss_pred HHHHCCCccC-CCcCcEEEEECCCCc-----ccHHHHHHHHHH-CCeEEeeCCCCC---CCCeEEEecC--CHHHHHHHH
Confidence 9998888644 567889999886311 234577777554 799995 66422 2579999998 789999999
Q ss_pred HHHHHHHHHcC
Q 019899 324 ERIQKVAETCK 334 (334)
Q Consensus 324 ~~l~~~~~~~~ 334 (334)
+.|+++++.++
T Consensus 357 ~al~~~~~~~~ 367 (369)
T PRK08153 357 EALPEALEAAR 367 (369)
T ss_pred HHHHHHHHHhh
Confidence 99999987653
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=301.37 Aligned_cols=266 Identities=23% Similarity=0.386 Sum_probs=220.0
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
||+|+.++.+ +.+++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...+. ..|.+++.+++.++++|++
T Consensus 116 ia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~-~~g~~~v~v~~~~~~~~~~ 192 (407)
T PLN02368 116 VAEFIERRDG--YPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATIS-LLGGTLVPYYLEESENWGL 192 (407)
T ss_pred HHHHHHHhcC--CCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHH-HcCCEEEEEecccccCCCC
Confidence 4667766555 66889999999999999999999987 799999999999999999998 8999999999876677899
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC-Ccchhhhhhhc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~-~~~~~~~~~~~ 158 (334)
|++.+++++++...++.+++++++++|+||||.+++.+++++|+++|++|+++||+||+|..+.|++. .+.++..+...
T Consensus 193 d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~ 272 (407)
T PLN02368 193 DVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMD 272 (407)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhh
Confidence 99999999986443444789999999999999999999999999999999999999999999998764 44555544221
Q ss_pred --cccC-CCcEEEEecccccC-CCCCceEEEEee--cCHHHHHHHHHhh-cccCCChHHHHHHHHhhCChH----H---H
Q 019899 159 --EEVD-KDRVHIIYGLSKDL-SLPGFRTGVIYS--YNESVLAAAKKLT-RFCSISAPTQRLLISMLSDTK----F---I 224 (334)
Q Consensus 159 --~~~~-~~~~~~~~s~sK~~-~~~g~r~g~i~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~----~---~ 224 (334)
+..+ .+++++++||||.+ +++|+|+||+++ .++++++.+.+.. ..++.+++.|.++..++...+ . .
T Consensus 273 ~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~ 352 (407)
T PLN02368 273 MGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQF 352 (407)
T ss_pred hcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHH
Confidence 0011 35899999999998 899999999994 3778888887753 346788899999999987431 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCc
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGL 269 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~ 269 (334)
.+...++.+.++++++.+.+.|.++ |+.+..|+|+||+|++++-+
T Consensus 353 ~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~lp 398 (407)
T PLN02368 353 VRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLP 398 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCCCC
Confidence 2223557889999999999999997 89999999999999877643
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=302.28 Aligned_cols=288 Identities=23% Similarity=0.340 Sum_probs=235.9
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCC-CeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHG-NALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~g-d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
-+++.+++.+++++++|++|+|+++++..++.+++++| |+|+++.|+|+.|...++ ..|.+++.++++ +++.+|++
T Consensus 61 ~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~-~~G~~~~~v~~~--~~~~~d~~ 137 (351)
T PRK01688 61 AVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-TIGVEIRTVPTL--DNWQLDLP 137 (351)
T ss_pred HHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHH-HcCCEEEEeecC--CCCCCCHH
Confidence 34455555567899999999999999999999999887 899999999999999888 899999999984 45789999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++++++ + +++++++++|+||||.+++.++++++++.|++ +.+||+||+|.+|... .+...+..+
T Consensus 138 ~l~~~~-~------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~----~s~~~~~~~---- 201 (351)
T PRK01688 138 AIADNL-D------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQ----ASLAGWLAE---- 201 (351)
T ss_pred HHHHhc-c------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCC----CChHHHHhh----
Confidence 999877 3 68999999999999999999999999999876 6889999999987632 122233221
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
.++++++.||||.+|++|+|+||+++ ++++++.+.+....++.+.+.+.++..++.... .+++.+.++.+.++++++
T Consensus 202 ~~n~iv~rSfSK~~glaGlRiGy~i~-~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l 278 (351)
T PRK01688 202 YPHLVILRTLSKAFALAGLRCGFTLA-NEEVINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWL 278 (351)
T ss_pred CCCEEEEecchHhhcCHHHHHhHHhC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999998 889999998888888889888888888876532 245566777888889999
Q ss_pred HHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHH
Q 019899 243 VAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPL 321 (334)
Q Consensus 243 ~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~ 321 (334)
.+.|+++ ++....|.++.|+|++++. +.++.+.|+ ++||.++++..+. ..++++|++++ +++++++
T Consensus 279 ~~~L~~~~~~~~~~ps~~nfi~~~~~~---------~~~l~~~L~-~~gi~vr~~~~~~-~~~~~iRis~~--~~~e~~~ 345 (351)
T PRK01688 279 IAALKEIPCVEQVFDSETNYILARFTA---------SSAVFKSLW-DQGIILRDQNKQP-GLSNCLRITIG--TREECQR 345 (351)
T ss_pred HHHHHhCCCCCeECCCCCcEEEEEcCC---------HHHHHHHHH-HCCeEEEECCCcC-CCCCeEEEeCC--CHHHHHH
Confidence 9999887 5654556677889998862 357888865 5899999765442 23679999998 7899999
Q ss_pred HHHHH
Q 019899 322 VIERI 326 (334)
Q Consensus 322 ~l~~l 326 (334)
+++.|
T Consensus 346 l~~al 350 (351)
T PRK01688 346 VIDAL 350 (351)
T ss_pred HHHhh
Confidence 98876
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=300.11 Aligned_cols=294 Identities=18% Similarity=0.295 Sum_probs=244.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||.|++++|+|..+...+. ..|.+++.++. +++.+|++.+
T Consensus 72 lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~~~~---~~~~~~~~~l 147 (367)
T PRK02731 72 LKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQ-AVGAKPVEVPA---KDYGHDLDAM 147 (367)
T ss_pred HHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHH-HcCCeEEEecc---cCCCCCHHHH
Confidence 5555666667888999999999999999999999999999999999998888777 89999999986 5578999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++++ ++++|++++|+||||.+++.+++.++++.|+ +++++|+||+|..+.+.+.....+..+.. .+
T Consensus 148 ~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~-----~~ 215 (367)
T PRK02731 148 LAAVTP------RTRLVFIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAK-----FP 215 (367)
T ss_pred HHHhCC------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhh-----cC
Confidence 998874 7899999999999999999999988888775 69999999999988875433333322222 57
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
++++++|+||.+|++|+|+||+++ ++++++.+.+....+..++++|.++..+++.. ++.++.++.++++++.+.+
T Consensus 216 ~~i~~~S~SK~~g~~G~RiG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~~~~l~~ 290 (367)
T PRK02731 216 NVVVTRTFSKAYGLAGLRVGYGIA-PPEIIDALNRVRQPFNVNSLALAAAVAALDDD----AFVEKSRALNAEGMAWLTE 290 (367)
T ss_pred CEEEEeeehHhhcCcccceeeeeC-CHHHHHHHHHccCCCCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999998 88899999887777788999999999999763 3456677788888999999
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|++.|+.+. +.+|+++|++++... ++.++.+.|. ++||.+.|+..|+ .++++|++++ ++++++++++
T Consensus 291 ~L~~~g~~~~-~~~g~~~~i~~~~~~------~~~~~~~~L~-~~gI~v~~~~~~~--~~~~iRis~~--~~~e~~~l~~ 358 (367)
T PRK02731 291 FLAELGLEYI-PSVGNFILVDFDDGK------DAAEAYQALL-KRGVIVRPVAGYG--LPNALRITIG--TEEENRRFLA 358 (367)
T ss_pred HHHHCCCccC-CCCceEEEEECCCCC------CHHHHHHHHH-HCCEEEEeCCCCC--CCCeEEEecC--CHHHHHHHHH
Confidence 9998888776 456788999986432 3467888855 5899999988775 2579999998 7889999999
Q ss_pred HHHHHHH
Q 019899 325 RIQKVAE 331 (334)
Q Consensus 325 ~l~~~~~ 331 (334)
.|+++++
T Consensus 359 aL~~~~~ 365 (367)
T PRK02731 359 ALKEFLA 365 (367)
T ss_pred HHHHHHh
Confidence 9999875
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=298.94 Aligned_cols=291 Identities=22% Similarity=0.305 Sum_probs=237.7
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.+..+ +++++++|++|+|+++++..++.+++++||.|+++.|+|+.+...++ ..|.+++.++. ++++.+|
T Consensus 74 ia~~~~~~~~--~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~-~~g~~~~~~~~--~~~~~~d 148 (368)
T PRK03317 74 LAAYLTAQTG--VGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIAR-GTHTEWVEGPR--AADFTLD 148 (368)
T ss_pred HHHHhhhhcc--CCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-hcCCeeEEccc--CCCCCCC
Confidence 3566666555 57899999999999999999999999999999999999999999888 88988888876 4567899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++. +++++++++|+||||.+++.+++++|+++| ++++|+||+|+++.+.+.. +...+.+.
T Consensus 149 ~~~l~~~~~~~-----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~~--~~~~~~~~-- 216 (368)
T PRK03317 149 VDAAVAAIAEH-----RPDVVFLTSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGTP--SALTLLPE-- 216 (368)
T ss_pred HHHHHHHHhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCCc--CHHHHHHh--
Confidence 99999998752 688999999999999999988887777766 7999999999998765432 22333221
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
.++++++.||||.+|++|+|+||+++ ++++++.++.....++.+++.|.++..++...+. ..+..+++.++++
T Consensus 217 --~~~~i~~~SfSK~~g~~GlRiG~~~~-~~~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~ 289 (368)
T PRK03317 217 --YPRLVVSRTMSKAFAFAGGRLGYLAA-APAVVDALRLVRLPYHLSAVTQAAARAALRHADE----LLASVAALRAERD 289 (368)
T ss_pred --CCCEEEEEechhhhccchhhhhhhhC-CHHHHHHHHhcCCCCCCCHHHHHHHHHHhhCHHH----HHHHHHHHHHHHH
Confidence 45889999999999999999999998 8899999987777788899999999888876332 2334456788888
Q ss_pred HHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHH
Q 019899 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIP 320 (334)
Q Consensus 241 ~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~ 320 (334)
.+.+.|++.|+.+..+.+++++|.+++ +..++...|+ ++||.+.+.. .++++|++++ ++++++
T Consensus 290 ~l~~~L~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~--~~~~~~ 352 (368)
T PRK03317 290 RVVAWLRELGLRVAPSDANFVLFGRFA---------DRHAVWQGLL-DRGVLIRDVG-----IPGWLRVTIG--TPEEND 352 (368)
T ss_pred HHHHHHHHCCCEeCCCCCcEEEEeccC---------CHHHHHHHHH-HCCEEEEeCC-----CCCeEEEecC--CHHHHH
Confidence 999999998998888888988876653 2356777744 5899998642 2579999998 778899
Q ss_pred HHHHHHHHHHHH
Q 019899 321 LVIERIQKVAET 332 (334)
Q Consensus 321 ~~l~~l~~~~~~ 332 (334)
++++.++++++.
T Consensus 353 ~~~~~l~~~~~~ 364 (368)
T PRK03317 353 AFLAALAEVLAT 364 (368)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=302.91 Aligned_cols=306 Identities=19% Similarity=0.267 Sum_probs=233.3
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC-----CCCeEEe-cCCCCCChhhhhhhccC----cEEEEEe
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD-----HGNALLV-PSPYYPGFDRDIRFRTG----VELIPVH 70 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~-----~gd~vl~-~~p~~~~~~~~~~~~~g----~~v~~v~ 70 (334)
||+|+.+..+ +++++++|++|+|+++++.+++.++++ +||.|++ ++|+|+.|...+. ..+ ..+..++
T Consensus 83 ia~~~~~~~g--~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~-~~~~~~~~~~~~~~ 159 (416)
T PRK09440 83 LAALLNERYG--WNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGL-EEDLFVSYRPNIEL 159 (416)
T ss_pred HHHHHHHHhC--CCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhh-ccCceeeccccccc
Confidence 4677776666 778999999999999999999999985 5899999 6999999987554 332 2222233
Q ss_pred CCCC-CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc
Q 019899 71 CRST-DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF 149 (334)
Q Consensus 71 ~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~ 149 (334)
+..+ .++.+|++.++ +. .+++++++++|+||||.+++.+++++|+++|++++++||+||+|+.+... .
T Consensus 160 ~~~~~~~~~~d~~~l~--~~------~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-~-- 228 (416)
T PRK09440 160 LPEGQFKYHVDFEHLH--ID------EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-I-- 228 (416)
T ss_pred ccccccccCCCHHHcc--cC------CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-c--
Confidence 3211 14678998887 22 26899999999999999999999999999999999999999999753211 0
Q ss_pred chhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHH
Q 019899 150 VSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
......+ . ..+++++++||||. +++|+|+||+++ ++++++.+...... .+.+.+.|.++..++.+.++....
T Consensus 229 -~~~~~~~--~-~~~~vI~~~SfSK~-~~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 302 (416)
T PRK09440 229 -IFSEATP--L-WNPNIILCMSLSKL-GLPGVRCGIVIA-DEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLS 302 (416)
T ss_pred -chhhcCc--c-ccCCeEEEeccccc-CCCcceEEEEeC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHH
Confidence 1111111 0 14789999999996 789999999998 88898888776544 467889999999999887653333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE 303 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~ 303 (334)
....++.++++++.+.+.|++. ++.+..|.+|+|+|++++... .++.++.+. ++++||.+.||..|+...
T Consensus 303 ~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~-----~~~~~~~~~-l~~~gV~v~pg~~F~~~~ 376 (416)
T PRK09440 303 ETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLP-----ITTEELYQR-LKARGVLVVPGHYFFPGL 376 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCCC-----CCHHHHHHH-HHHCCEEEechHhhCCCC
Confidence 2335777888888888888653 455668889999999998621 123567777 466899999999885321
Q ss_pred -------CCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 304 -------PGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 304 -------~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+++|++++ .+++++++++++|++++++.
T Consensus 377 ~~~~~~~~~~iRis~~-~~~~~l~~~i~~l~~~~~~~ 412 (416)
T PRK09440 377 DEDWPHAHQCIRMNYV-QDDEEIEKGIAILAEEVEKA 412 (416)
T ss_pred ccccCCcCceEEEEec-CCHHHHHHHHHHHHHHHHHH
Confidence 358999998 47899999999999998764
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=295.47 Aligned_cols=303 Identities=21% Similarity=0.313 Sum_probs=243.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC-CCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS-TDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~~~~~~ 83 (334)
+++.++..+++++++|++|+|+++++..++.+++.+||+|++++|+|..+...++ ..|.+++.+++.. ++++.+|++.
T Consensus 71 lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~~~ 149 (380)
T PRK06225 71 LRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFAS-RFGAEVIEVPIYSEECNYKLTPEL 149 (380)
T ss_pred HHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-HhCceEEeeccccccCCccCCHHH
Confidence 5556666677889999999999999999999999999999999999998888888 8999999999743 3467899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++.+++ +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.+|..+. .....+ +.
T Consensus 150 l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~------~~ 214 (380)
T PRK06225 150 VKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH---TLAAEY------AP 214 (380)
T ss_pred HHhhcCC------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC---Cchhhc------CC
Confidence 9998875 78999999999999999999999999999999999999999998765422 111111 25
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
++++++.||||.+|++|+|+||+++ ++++.+.++... ..++.+.+.+.++..++... .++.++.++.++++++.+
T Consensus 215 ~~~i~~~s~SK~~g~~G~RiG~i~~-~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l 290 (380)
T PRK06225 215 EHTVTSYSFSKIFGMAGLRIGAVVA-TPDLIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLI 290 (380)
T ss_pred CCEEEEeechhhcCCccceeEEEec-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999998 788888887654 34667888888887777642 234455666777778888
Q ss_pred HHHHHhC-CCcc-cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecCCCcccH
Q 019899 243 VAGLKQL-GIRC-SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTSLTHEDI 319 (334)
Q Consensus 243 ~~~l~~~-g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~~~~~~l 319 (334)
.+.|++. ++.+ ..+.+|.++|++++... .+..++...|. ++||.+.||..|+.. .++++|++++ .+++++
T Consensus 291 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~-~~~e~l 363 (380)
T PRK06225 291 KEAVDEIEGVFLPVYPSHGNMMVIDISEAG-----IDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFS-IPREQV 363 (380)
T ss_pred HHHHHhCcCCccccCCCCCeEEEEEccccc-----CCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeC-CCHHHH
Confidence 8888874 5432 23556778899986421 13467888865 589999999876542 3579999998 688999
Q ss_pred HHHHHHHHHHHHHcC
Q 019899 320 PLVIERIQKVAETCK 334 (334)
Q Consensus 320 ~~~l~~l~~~~~~~~ 334 (334)
++++++|++++++.|
T Consensus 364 ~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 364 EVFCEEFPDVVETLR 378 (380)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998754
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=297.05 Aligned_cols=273 Identities=18% Similarity=0.286 Sum_probs=220.1
Q ss_pred HHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCC
Q 019899 30 VEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANP 109 (334)
Q Consensus 30 ~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~np 109 (334)
+...+..++.+||+|++++|+|+.|...++ ..|.+++.+++.+++++.+|++.+++.+++. ..+++++++++|+||
T Consensus 131 l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~-~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NP 206 (423)
T PLN02397 131 LGAEFLARFYPGSTIYIPNPTWGNHHNIFR-DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNP 206 (423)
T ss_pred HHHHHHHHhCCCCEEEEeCCCchhHHHHHH-HcCCeEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCC
Confidence 444444555799999999999999999999 9999999999844455789999999888642 136788888999999
Q ss_pred cccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC--CcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEe
Q 019899 110 VGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE--EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIY 187 (334)
Q Consensus 110 tG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~ 187 (334)
||.+++.+++++|+++|++|+++||+||+|.++.|++. ...++..+.. ...++++++||||+++++|+|+||++
T Consensus 207 TG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~----~~~~vI~~~SfSK~~~~~G~RvG~~v 282 (423)
T PLN02397 207 TGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVE----DGHEILVAQSYAKNMGLYGERVGALS 282 (423)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHh----cCCcEEEEEECcccCCCccccceEEE
Confidence 99999999999999999999999999999999998541 2334433332 13579999999999999999999985
Q ss_pred --ecCHHHHH----HHHHhhc--ccCCChHHHHHHHHhhCChHHHHHH---HHHHHHHHHHHHHHHHHHHHhCC----Cc
Q 019899 188 --SYNESVLA----AAKKLTR--FCSISAPTQRLLISMLSDTKFIQEY---LETNKRRIKKLYDSFVAGLKQLG----IR 252 (334)
Q Consensus 188 --~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~g----~~ 252 (334)
++++++++ .+..... .++.+.+.|.++..++...++.+++ +.+++++++++++.+.+.|++++ ++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~ 362 (423)
T PLN02397 283 VVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWS 362 (423)
T ss_pred EEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 44555544 3333332 2356778999999999876443343 67889999999999999999987 77
Q ss_pred ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 253 CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
+..|++|||+|++++ .+++.+|++++||.+.+ .+ |++++..+++++++++++|++++.
T Consensus 363 ~~~p~gg~fl~~~l~-----------~~~~~~Ll~~~~V~v~~--------~~--Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 363 HITKQIGMFSFTGLN-----------KEQVDRMTKEYHIYMTR--------DG--RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred cccCCceEEEecCCC-----------HHHHHHHHHhCCEEECC--------CC--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 778999999999874 36899999999999963 22 999987899999999999999985
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=294.92 Aligned_cols=287 Identities=19% Similarity=0.323 Sum_probs=233.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.++++ .++.+|++++
T Consensus 83 Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~l 159 (370)
T PRK09105 83 LRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAAD-AQGAPVAKVPLR--ADGAHDVKAM 159 (370)
T ss_pred HHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-HcCCeEEEecCC--CCCCCCHHHH
Confidence 4455566677899999999999999999999999999999999999999999888 899999999984 4567899998
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++. .+ +++++++++|+||||.+++.++++++++.| ++++++|+||+|..|... .+...+.. ..+
T Consensus 160 ~~~-~~------~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~-~~~~~lIvDEaY~~f~~~----~s~~~~~~----~~~ 223 (370)
T PRK09105 160 LAA-DP------NAGLIYICNPNNPTGTVTPRADIEWLLANK-PAGSVLLVDEAYIHFSDA----PSVVDLVA----QRK 223 (370)
T ss_pred Hhc-CC------CCCEEEEeCCCCCCCcCcCHHHHHHHHHhC-CCCcEEEEECchHHhccC----cchHHHHh----hCC
Confidence 865 22 678999999999999999999999999875 469999999999876531 13333322 157
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.||||.+|++|+|+||+++ ++++++.+... ..+..+.+.+.++..++.+. +++++.+++++++++++.+
T Consensus 224 ~vi~~~SfSK~~g~~GlRiG~~v~-~~~~i~~l~~~-~~~~~~~~~~~aa~~~L~~~----~~~~~~~~~~~~~r~~l~~ 297 (370)
T PRK09105 224 DLIVLRTFSKLYGMAGMRLGLAAA-RPDLLAKLARF-GHNPLPVPAAAAGLASLRDP----KLVPQRRAENAAVREDTIA 297 (370)
T ss_pred CEEEEecccHhhcCCccceeeeec-CHHHHHHHHhc-CCCCcCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998 88888888776 45567788888888888653 4567777889999999999
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|++.|+++..+.++|+ +++++. +..++.+.|++ +||.+ +..|+ ..++++|++++ ++++++++++
T Consensus 298 ~L~~~g~~~~~~~~~f~-~~~~~~--------~~~~l~~~L~~-~gI~v--~~~~~-~~~~~~Ris~~--~~~~~~~l~~ 362 (370)
T PRK09105 298 WLKKKGYKCTPSQANCF-MVDVKR--------PAKAVADAMAK-QGVFI--GRSWP-IWPNWVRVTVG--SEEEMAAFRS 362 (370)
T ss_pred HHHHCCCCcCCCCCcEE-EEeCCC--------CHHHHHHHHHH-CCcEE--ecCCC-CCCCeEEEEcC--CHHHHHHHHH
Confidence 99999988888888776 477652 24678888776 69998 33343 23689999998 6788999999
Q ss_pred HHHHHHH
Q 019899 325 RIQKVAE 331 (334)
Q Consensus 325 ~l~~~~~ 331 (334)
.|+++++
T Consensus 363 al~~~~~ 369 (370)
T PRK09105 363 AFAKVMR 369 (370)
T ss_pred HHHHHhh
Confidence 9988763
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=290.18 Aligned_cols=286 Identities=19% Similarity=0.302 Sum_probs=230.0
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
.+++.+++.+++++++|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.+++ ++++.+|+++
T Consensus 64 ~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-~~g~~~~~v~~--~~~~~~d~~~ 140 (353)
T PRK05387 64 ALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAG-LYGIPYEEIPL--DDDFSIDVED 140 (353)
T ss_pred HHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHH-HcCCEEEEeec--CCCCCCCHHH
Confidence 35566666677899999999999999999999999999999999999998888777 89999999998 3457899988
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++ +.+++++++|+||||.++|.+++.+|+++++ ++++|+||+|.+|. +....++ .. ..
T Consensus 141 l~~----------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~~~--~~~~~~~---~~----~~ 199 (353)
T PRK05387 141 YLR----------PNGGIIFPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVDFG--GESAIPL---ID----RY 199 (353)
T ss_pred HHh----------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCcccccC--CcchHHH---Hh----hC
Confidence 863 3578999999999999999988988888653 99999999998753 3222222 22 15
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc---ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR---FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
+++++++||||.+|++|+|+||+++ ++++++.+++... .++.+.+.|.++..++...+ +..+.++++.++++
T Consensus 200 ~~~i~~~S~SK~~~~~GlR~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~ 274 (353)
T PRK05387 200 PNLLVVQTFSKSRSLAGLRVGFAIG-HPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEA----YFEETRAKVIATRE 274 (353)
T ss_pred CCEEEEEehhHhhcchhhhceeeec-CHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHH
Confidence 6799999999999999999999998 8899898887653 34678899999988887643 34566778889999
Q ss_pred HHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHH
Q 019899 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIP 320 (334)
Q Consensus 241 ~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~ 320 (334)
.+.+.|++.|+.+. +.+++|+|++++.. +..++.+.| .++||.+.+... ...++++|++++ ++++++
T Consensus 275 ~l~~~L~~~g~~~~-~~~~~~~~~~~~~~-------~~~~~~~~l-~~~gi~v~~~~~--~~~~~~iRis~~--~~~~~~ 341 (353)
T PRK05387 275 RLVEELEALGFEVL-PSKANFVFARHPSH-------DAAELAAKL-RERGIIVRHFNK--PRIDQFLRITIG--TDEEME 341 (353)
T ss_pred HHHHHHHHCCCeEC-CCcCcEEEEECCCC-------CHHHHHHHH-HHCCEEEEECCC--CCCCCeEEEEeC--CHHHHH
Confidence 99999999888754 45677889987742 346788885 558999975321 123579999998 779999
Q ss_pred HHHHHHHHHHH
Q 019899 321 LVIERIQKVAE 331 (334)
Q Consensus 321 ~~l~~l~~~~~ 331 (334)
++++.|++++.
T Consensus 342 ~~~~~L~~~~~ 352 (353)
T PRK05387 342 ALVDALKEILA 352 (353)
T ss_pred HHHHHHHHHhh
Confidence 99999998875
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=292.25 Aligned_cols=287 Identities=18% Similarity=0.308 Sum_probs=234.8
Q ss_pred hhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.++++. ++|++|+|+++++..++.+++++||+|++++|+|..+...++ ..|.+++.++++ +++.+|+++
T Consensus 68 lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-~~g~~~~~i~~~--~~~~~d~~~ 144 (356)
T PRK04870 68 LKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAK-LAGLEFVGVPLT--ADFTLDLPA 144 (356)
T ss_pred HHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHH-HcCCEEEEecCC--CCCCCCHHH
Confidence 3444455555555 489999999999999999999999999999999999999888 999999999984 457899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++++. +++++++++|+||||.++|.+++++++++| ++++|+||+|..+.+.. .. ..+.. .
T Consensus 145 l~~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~--~~--~~~~~-----~ 207 (356)
T PRK04870 145 MLAAIAEH-----RPALVFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS--WL--PRLAR-----F 207 (356)
T ss_pred HHHHhhcC-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc--hH--HHHhh-----C
Confidence 99998752 789999999999999999999999999988 77899999998865421 11 11222 5
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
++++++.|+|| ++++|+|+||+++ ++++++.+......++.+.+.|.++..+++..+ ++++.+++++++++.+.
T Consensus 208 ~~vi~~~S~SK-~~~~GlRiG~~i~-~~~~i~~~~~~~~~~~~~~~~q~~a~~~l~~~~----~~~~~~~~~~~~~~~l~ 281 (356)
T PRK04870 208 PNLLVMRTVSK-LGLAGLRLGYLAG-HPAWIAELDKVRPPYNVNVLTQATALFALEHVD----VLDAQAAQLRAERTRLA 281 (356)
T ss_pred CCEEEEecchh-hhhHHHhhhhhhC-CHHHHHHHHHccCCCcCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHH
Confidence 68999999999 8889999999998 788888888777667888899988888876532 34666778889999999
Q ss_pred HHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 244 AGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 244 ~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
+.|++. ++.+ .+.+++|+|++++. ..++... ++++||.+.|+..|+...++++|++++ ++++.+++
T Consensus 282 ~~L~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~-l~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l 348 (356)
T PRK04870 282 AALAALPGVTV-FPSAANFILVRVPD---------AAAVFDG-LKTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQF 348 (356)
T ss_pred HHHHhCCCcEE-CCCCCeEEEEECCC---------HHHHHHH-HHHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHH
Confidence 999887 7765 45567789998872 2466666 677999999998886555789999999 78899999
Q ss_pred HHHHHHHH
Q 019899 323 IERIQKVA 330 (334)
Q Consensus 323 l~~l~~~~ 330 (334)
+++|++++
T Consensus 349 ~~al~~~~ 356 (356)
T PRK04870 349 LAALKAAL 356 (356)
T ss_pred HHHHHHhC
Confidence 99998753
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=286.84 Aligned_cols=287 Identities=19% Similarity=0.338 Sum_probs=227.7
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
.+++.+++.+++++++|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.++++ +++.+|+++
T Consensus 63 ~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~ 139 (351)
T PRK14807 63 KLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSK-IAGAVEIPVKLK--EDYTYDVGS 139 (351)
T ss_pred HHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-HcCCeEEEeecC--CCCCCCHHH
Confidence 35666666678889999999999999999999999999999999999999888888 899999999973 456899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++++. +++++++++|+||||.+++.+++.++ |++++.++|+||+|.++. +....+. +.. .
T Consensus 140 l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l---~~~~~~~~ivDe~y~~~~--~~~~~~~--~~~-----~ 202 (351)
T PRK14807 140 FIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKI---IEKSRGIVVVDEAYFEFY--GNTIVDV--INE-----F 202 (351)
T ss_pred HHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHH---HHhCCCEEEEeCcchhhc--ccchHHH--hhh-----C
Confidence 99998752 78999999999999999996555555 456677899999998763 2222221 111 5
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
+++++++||||.+|++|+|+||+++ ++++++.++.....+..+.+.|.++..+++.. + +.+..+.+.++++.+.
T Consensus 203 ~~vi~~~S~SK~~~~~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~----~~~~~~~~~~~r~~l~ 276 (351)
T PRK14807 203 ENLIVLRTLSKAFGLAGLRVGYAVA-NENILKYLNLVKSPYNINSLSQVIALKVLRTG-V----LKERVNYILNERERLI 276 (351)
T ss_pred CCEEEEecchHhcccchhceeeeec-CHHHHHHHHHccCCCCcCHHHHHHHHHHHhHH-H----HHHHHHHHHHHHHHHH
Confidence 7899999999999999999999998 88999999887777788999999999998652 2 3444556778888888
Q ss_pred HHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 244 AGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 244 ~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
+.|++. |+.+. +.+++|+|++++. ..++.+. +.++||.+.++.... ..++++|++++ ++++.+++
T Consensus 277 ~~l~~~~g~~~~-~~~~~~~~i~~~~---------~~~~~~~-l~~~gV~v~~~~~~~-~~~~~iRis~~--~~~~~~~l 342 (351)
T PRK14807 277 KELSKIPGIKVY-PSKTNFILVKFKD---------ADYVYQG-LLERGILVRDFSKVE-GLEGALRITVS--SCEANDYL 342 (351)
T ss_pred HHHHhCCCcEEC-cCCccEEEEEcCC---------HHHHHHH-HHHCCEEEEECCCCC-CCCCeEEEEcC--CHHHHHHH
Confidence 999775 77765 4457789998863 2466666 445799998754321 23679999998 67788888
Q ss_pred HHHHHHHH
Q 019899 323 IERIQKVA 330 (334)
Q Consensus 323 l~~l~~~~ 330 (334)
++.|++++
T Consensus 343 ~~~l~~~~ 350 (351)
T PRK14807 343 INGLKELL 350 (351)
T ss_pred HHHHHHhh
Confidence 98888764
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=285.59 Aligned_cols=285 Identities=20% Similarity=0.316 Sum_probs=229.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++.+++. ++++ .++++.|+|..+...++ ..|.+++.+++++ ++.+|++.+
T Consensus 63 lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l~~~-~viv~~P~y~~~~~~~~-~~G~~i~~v~~~~--~~~~d~~~l 136 (349)
T PRK07908 63 ARAAVAARHGRTPDEVLLLAGAAEGFALLAR--LRPR-RAAVVHPSFTEPEAALR-AAGIPVHRVVLDP--PFRLDPAAV 136 (349)
T ss_pred HHHHHHHHhCcChhhEEECCCHHHHHHHHHh--cCCC-eEEEeCCCChHHHHHHH-HcCCEEEeeccCc--ccCcChhHh
Confidence 4555556667899999999999999999988 4564 67788999999998888 8999999999843 367888754
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++ +++++++++|+||||.++|.+ +|.++|+ ++.++|+||+|+++.. +. ..++... +.+
T Consensus 137 ----~~------~~~~i~l~np~NPTG~~~~~~---~l~~l~~-~~~~iIvDe~y~~~~~-~~-~~~l~~~------~~~ 194 (349)
T PRK07908 137 ----PD------DADLVVIGNPTNPTSVLHPAE---QLLALRR-PGRILVVDEAFADAVP-GE-PESLAGD------DLP 194 (349)
T ss_pred ----cc------CCCEEEEcCCCCCCCCCcCHH---HHHHHHh-cCCEEEEECcchhhcc-CC-ccccccc------cCC
Confidence 22 678999999999999999955 4555565 5788999999998754 22 2333332 256
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
++++++||||.++++|+|+||+++ ++++++.+......+..+++.+.++..++.... .+++.+.+++++++++++.+
T Consensus 195 ~~i~i~S~SK~~~l~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~ 271 (349)
T PRK07908 195 GVLVLRSLTKTWSLAGLRVGYALG-APDVLARLTRGRAHWPVGTLQLEAIAACCAPRA--VAEAAADAARLAADRAEMVA 271 (349)
T ss_pred CEEEEeecccccCCccceeeeeec-CHHHHHHHHhcCCCCCccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999998 888999988777677788888888878776322 35567788899999999999
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|+++++++..+.+++|+|++++. ..++... ++++||.+.||..|+...++++|++++ ++++++++++
T Consensus 272 ~L~~~~~~~~~p~~g~~~~~~~~~---------~~~~~~~-l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~ 339 (349)
T PRK07908 272 GLRAVGARVVDPAAAPFVLVRVPD---------AELLRKR-LRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQ 339 (349)
T ss_pred HHHhCCcEeccCCCceEEEEECCc---------HHHHHHH-HHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHH
Confidence 999888888888899999999874 1355555 677899999999886445789999997 8899999999
Q ss_pred HHHHHHHH
Q 019899 325 RIQKVAET 332 (334)
Q Consensus 325 ~l~~~~~~ 332 (334)
.|++++..
T Consensus 340 al~~~~~~ 347 (349)
T PRK07908 340 ALAEILKA 347 (349)
T ss_pred HHHHHHhc
Confidence 99988754
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=289.86 Aligned_cols=288 Identities=19% Similarity=0.304 Sum_probs=232.0
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCC-CeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHG-NALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~g-d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
..+++.+++.+++++++|++|+|+++++..++.+++++| |+|+++.|+|+.|...++ ..|.+++.+|+. +++.+|+
T Consensus 63 ~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~-~~g~~v~~v~~~--~~~~~~~ 139 (354)
T PRK04635 63 PELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAE-TFNVGVKALPLT--ADYQLPL 139 (354)
T ss_pred HHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-HcCCEEEEEecC--CCCCCCH
Confidence 356677777788999999999999999999999999888 899999999999988888 899999999984 4567888
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+.+++ + + +++++++++|+||||.++|.+++.++++.|+ +++||+||+|.++... .+...+..
T Consensus 140 ~~l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~----~s~~~~~~---- 201 (354)
T PRK04635 140 DYIEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPE----YSVADLLA---- 201 (354)
T ss_pred HHHHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccC----cchHHHHh----
Confidence 88863 3 2 7899999999999999999999999998876 4999999999987632 12222222
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (334)
..++++++.||||++|++|+|+||+++ ++++++.+......++.+.+.+.++..++.... .+++.+.++.+++++++
T Consensus 202 ~~~~~iv~~S~SK~~~l~GlRlG~~i~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~--~~~~~~~~~~~~~~r~~ 278 (354)
T PRK04635 202 SYPNLVVLRTLSKAFALAGARCGFTLA-NEELIEILMRVIAPYPVPLPVSEIATQALSEAG--LARMKFQVLDLNAQGAR 278 (354)
T ss_pred hCCCEEEEechHHHhhhhHHHHhhhhC-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHH
Confidence 157889999999999999999999998 888999888776677888888888888886532 23456667788899999
Q ss_pred HHHHHHhCC-CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHH
Q 019899 242 FVAGLKQLG-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIP 320 (334)
Q Consensus 242 ~~~~l~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~ 320 (334)
+.+.|++++ +.+..+. |.|+|++++. ..++.+. ++++||.++++... ..++++|++++ ++++++
T Consensus 279 l~~~L~~~~~~~~~~~~-g~f~~~~~~~---------~~~~~~~-l~~~gv~v~~~~~~--~~~~~lRis~~--~~e~~~ 343 (354)
T PRK04635 279 LQAALSMYGGAKVLEGN-GNYVLAKFDD---------VDAVFKA-LWDAGIVARAYKDP--RLANCIRFSFS--NRAETD 343 (354)
T ss_pred HHHHHHhCCCceECCCC-CcEEEEECCC---------HHHHHHH-HHHCCEEEEECCCC--CCCCeEEEEeC--CHHHHH
Confidence 999999885 6766554 5678888862 2456655 66789999865432 23679999998 889999
Q ss_pred HHHHHHHHH
Q 019899 321 LVIERIQKV 329 (334)
Q Consensus 321 ~~l~~l~~~ 329 (334)
+++++|++.
T Consensus 344 ~l~~al~~~ 352 (354)
T PRK04635 344 KLIGLIRNQ 352 (354)
T ss_pred HHHHHHHHh
Confidence 999998753
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=281.26 Aligned_cols=275 Identities=16% Similarity=0.281 Sum_probs=221.1
Q ss_pred hhhhhcCCCCCC-CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFD-PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.+++. +++|++|+|+++++..+.. ++++|| |++++|+|+.|...++ ..|.+++.++.+. +.
T Consensus 58 L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~-~~g~~~~~v~~~~--------~~ 126 (339)
T PRK06959 58 LAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFA-RHGHRVVPLDEAA--------DT 126 (339)
T ss_pred HHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHH-HCCCEEEeecccc--------hh
Confidence 344444555565 5899999999999987755 567776 8899999999999999 9999999888521 11
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+.+ .++++++++|+||||.+++.++++++++.|.+++.++|+||+|.++.+. .++..+.. .
T Consensus 127 ----~~~------~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~~-----~ 187 (339)
T PRK06959 127 ----LPA------ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHTD-----R 187 (339)
T ss_pred ----ccc------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhccC-----C
Confidence 222 4578999999999999999999999999999999999999999987642 23333222 4
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
+++++++||||.+|++|+|+||+++ ++++++.+.+....++.+.+.|.++..++++.++ ..+.++.++++++++.
T Consensus 188 ~~vi~l~SfSK~~gl~GlRiGy~v~-~~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~----~~~~~~~~~~~r~~l~ 262 (339)
T PRK06959 188 PGLVVLRSVGKFFGLAGVRAGFVLA-APALLAALRDALGAWTVSGPARHAVRAAFADAAW----QAAMRERLAADGARLA 262 (339)
T ss_pred CCEEEEecChhhcCCcchheEEEec-CHHHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998 8899999998888888999999999999987543 4567788999999999
Q ss_pred HHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHH
Q 019899 244 AGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVI 323 (334)
Q Consensus 244 ~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l 323 (334)
+.|+++|+++. .+++|+|++++. ..++...|. ++||.+++ |+ ..+++||+++ .++++.++++
T Consensus 263 ~~L~~~g~~~~--~~~~f~~~~~~~---------~~~l~~~l~-~~GI~vr~---~~--~~~~lRisi~-~~~~e~~~l~ 324 (339)
T PRK06959 263 ALLRAHGFAVH--ATPLFSWTDDPR---------AAALHAALA-RRGIWTRY---FA--PPPSVRFGLP-ADEAEWQRLE 324 (339)
T ss_pred HHHHHCCCCcc--CcceEEEEeCCC---------HHHHHHHHH-hCCeEEEE---CC--CCCeEEEECC-CCHHHHHHHH
Confidence 99999888765 357889998752 257777754 57999974 32 2569999995 4778999999
Q ss_pred HHHHHHHHH
Q 019899 324 ERIQKVAET 332 (334)
Q Consensus 324 ~~l~~~~~~ 332 (334)
+.|+++++.
T Consensus 325 ~al~~~~~~ 333 (339)
T PRK06959 325 DALAECVPT 333 (339)
T ss_pred HHHHHHHHH
Confidence 999888764
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=286.02 Aligned_cols=287 Identities=19% Similarity=0.324 Sum_probs=231.7
Q ss_pred hhhhhhcCCCCCCCCcEEE-ecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 4 FMSQVLGQAVSFDPSQIVL-TAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~-~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
.+++.+++.+++++++|++ ++|+++++..++.+++++||+|+++.|+|+.+...++ ..|.+++.++. ++++.+|++
T Consensus 73 ~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-~~g~~~~~~~~--~~~~~~~~~ 149 (361)
T PRK00950 73 ELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAK-AHGAKPVYAKR--EEDFSLDVD 149 (361)
T ss_pred HHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-HcCCEEEEeec--CCCCCcCHH
Confidence 3556666667788999999 7888999999999999999999999999999888888 88999999985 455689999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++++.+++ +++++++++|+||||.++| .+++.++|+++|+++|+||+|.++. +.. ...+.. .
T Consensus 150 ~l~~~~~~------~~~~v~~~~p~nptG~~~~---~~~l~~l~~~~~~~li~De~y~~~~--~~~---~~~~~~----~ 211 (361)
T PRK00950 150 SVLNAITE------KTKVIFLCTPNNPTGNLIP---EEDIRKILESTDALVFVDEAYVEFA--EYD---YTPLAL----E 211 (361)
T ss_pred HHHHHhcc------CCCEEEEeCCCCCCCCCcC---HHHHHHHHHHCCcEEEEECchhhhC--ccc---hHHHHH----h
Confidence 99998865 7889999999999999999 5555666678899999999998765 222 222222 1
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
.+++++++||||.+|++|+|+||+++ ++++++.+++....++.+++.+.++..++...+ ++.+.+++++++++++
T Consensus 212 ~~~vi~~~S~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l 286 (361)
T PRK00950 212 YDNLIIGRTFSKVFGLAGLRIGYGFV-PEWLIDYYMRAKTPFSLTRLSQAAAIAALSDKE----YIEKSIEHGIKSREYL 286 (361)
T ss_pred cCCEEEEEeehHhhcCchhhcchhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHH
Confidence 56889999999999999999999998 888988898877777888999998888887643 3455666777777787
Q ss_pred HHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 243 VAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 243 ~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
.+.|. +++ .+.+++|+|++++.. ++.++++.|.+ +||.+.||..|+...++++|++++ ++++++++
T Consensus 287 ~~~l~---~~~-~~~~~~~i~~~~~~~-------~~~~~~~~l~~-~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l 352 (361)
T PRK00950 287 YNELP---FKV-YPSEANFVLVDVTPM-------TAKEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIG--TFEENERF 352 (361)
T ss_pred HhhcC---eeE-CCCcceEEEEECCCC-------CHHHHHHHHHH-CCEEEeeCCccCCCCCCeEEEECC--CHHHHHHH
Confidence 77775 444 345778899988431 34688888655 799999998886545689999998 77899999
Q ss_pred HHHHHHHH
Q 019899 323 IERIQKVA 330 (334)
Q Consensus 323 l~~l~~~~ 330 (334)
++.|++++
T Consensus 353 ~~~L~~il 360 (361)
T PRK00950 353 LEILKEIV 360 (361)
T ss_pred HHHHHHHh
Confidence 99999876
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=278.19 Aligned_cols=275 Identities=18% Similarity=0.259 Sum_probs=219.2
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.++ +++|++|+|+++++.++.. +.+||+|++++|+|+.+...++ ..|.+++.+|+ +++
T Consensus 54 Lr~~ia~~~~--~~~I~it~Gs~~al~~~~~--~~~gd~v~v~~P~y~~~~~~~~-~~g~~~~~v~~----------~~~ 118 (330)
T PRK05664 54 LEAAARAYYG--APQLLPVAGSQAAIQALPR--LRAPGRVGVLSPCYAEHAHAWR-RAGHQVRELDE----------AEV 118 (330)
T ss_pred HHHHHHHHhC--CCCEEECcCHHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHH-HcCCeEEEech----------hhH
Confidence 4555555444 5799999999999998863 5799999999999999999999 99999999985 235
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
+++++ +++++++++|+||||.+++.+++++|+++|++++++||+||+|.++.. ..++..+.. .+
T Consensus 119 ~~~~~-------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~----~~s~~~~~~-----~~ 182 (330)
T PRK05664 119 EAALD-------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTP----QHSLAACAH-----RP 182 (330)
T ss_pred hhhhc-------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCC----ccccccccc-----CC
Confidence 55543 567899999999999999999999999999999999999999986541 123333332 57
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
++++++||||.+|++|+|+||+++ ++++.+.+.+....++.+.+.|.++..++....+ ..+.++++.++++++.+
T Consensus 183 ~vi~~~SfSK~~gl~GlRiG~~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~r~~l~~ 257 (330)
T PRK05664 183 GLIVLRSFGKFFGLAGARLGFVLA-EPALLRALAELLGPWTVSGPTRWLAQAALADTPW----QRRQRERLLAASQRLAA 257 (330)
T ss_pred CEEEEeeccccccCCCcceEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999 7899999988777778899999999999976443 35667889999999999
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|++.+++.. +...+|+|++.+ ++.++.+. +.++||.+.+ |+ .++++|++++ .++++.+++++
T Consensus 258 ~L~~~~~~~~-~~~~~f~~~~~~---------~~~~~~~~-l~~~gi~v~~---f~--~~~~iRis~~-~~~~~~~~l~~ 320 (330)
T PRK05664 258 LLRRHGLTPA-GGCALFQWVRTE---------DAAALHEF-LARRGILTRL---FE--QPASLRFGLP-ADEADWARLDQ 320 (330)
T ss_pred HHHHCCCccc-CCcceEEEEecC---------CHHHHHHH-HHHCCeEEEE---CC--CCCeEEEECC-CCHHHHHHHHH
Confidence 9999876522 122367787764 23577777 5558999974 43 3579999998 46778889988
Q ss_pred HHHHHHHH
Q 019899 325 RIQKVAET 332 (334)
Q Consensus 325 ~l~~~~~~ 332 (334)
.|+++.++
T Consensus 321 al~~~~~~ 328 (330)
T PRK05664 321 ALLAYRKE 328 (330)
T ss_pred HHHHHHhh
Confidence 88877654
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=283.68 Aligned_cols=288 Identities=24% Similarity=0.392 Sum_probs=237.2
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
.+++.+++.+++++++|++++|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.+++. .++.+|+++
T Consensus 58 ~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~-~~g~~~~~~~~~--~~~~~d~~~ 134 (346)
T TIGR01141 58 ELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAK-IHGAEVVKVPLD--EDGQLDLED 134 (346)
T ss_pred HHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHH-HcCCeEEEeccC--CCCCCCHHH
Confidence 35566666677888999999999999999999999999999999999998887777 889999999984 346789999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++++ +++++++++|+||||.++|.+++.++++.|+ +++++|+|++|+.+.+.+ ...+.. .. .
T Consensus 135 l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~-~~~~~~--~~-----~ 199 (346)
T TIGR01141 135 ILVAIDD------KPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP-STLPLL--AE-----Y 199 (346)
T ss_pred HHHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc-cHHHHH--hh-----C
Confidence 9997654 7899999999999999999888888888877 799999999999766432 111211 11 4
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
+++++++|+||.+|++|+|+||+++ ++++++.++.....++.++++|.++..++...+ +..+.+++++++++++.
T Consensus 200 ~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~ 274 (346)
T TIGR01141 200 PNLIVLRTLSKAFGLAGLRIGYAIA-NAEIIDALNKVRAPFNLSRLAQAAAIAALRDDD----FIEKTVEEINAERERLY 274 (346)
T ss_pred CCEEEEehhhHhhhchhhhceeeec-CHHHHHHHHhccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHH
Confidence 5789999999999889999999998 888999998877778889999999999987643 45677888899999999
Q ss_pred HHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 244 AGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 244 ~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
+.|+++ |+++. +.+++++|++++. ++.++...|. ++||.+.||..|+.. ++++|++++ ++++++++
T Consensus 275 ~~L~~~~g~~~~-~~~g~~~~~~~~~--------~~~~~~~~L~-~~gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~ 341 (346)
T TIGR01141 275 DGLKKLPGLEVY-PSDANFVLIRFPR--------DADALFEALL-EKGIIVRDLNSYPGL-PNCLRITVG--TREENDRF 341 (346)
T ss_pred HHHHhcCCCEEC-CCcCCEEEEecCC--------CHHHHHHHHH-HCCeEEEeCCCcCCC-CCeEEEecC--CHHHHHHH
Confidence 999887 77754 4467889998874 2357888755 589999999988543 789999988 78899998
Q ss_pred HHHHH
Q 019899 323 IERIQ 327 (334)
Q Consensus 323 l~~l~ 327 (334)
++.|+
T Consensus 342 ~~~l~ 346 (346)
T TIGR01141 342 LAALR 346 (346)
T ss_pred HHHhC
Confidence 88763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=284.48 Aligned_cols=289 Identities=19% Similarity=0.300 Sum_probs=232.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++++|+++++..++..++++||+|+++.|+|..+...++ ..|.+++.+++.+ ++.+|++++
T Consensus 62 lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-~~g~~~~~v~~~~--~~~~~~~~l 138 (352)
T PRK03321 62 LRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQ-VAGATPVQVPLTP--DHTHDLDAM 138 (352)
T ss_pred HHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHH-HcCCEEEEccCCC--CCCCCHHHH
Confidence 4555666667888999999999999999999999999999999999998887777 8899999999742 367899999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++++ +++++++++|+||||.++|.+++.++++.| +++++||+||+|+++.+.+....++..... .+
T Consensus 139 ~~~~~~------~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~ 206 (352)
T PRK03321 139 AAAITD------RTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRD-----HP 206 (352)
T ss_pred HHhhcc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhh-----CC
Confidence 998875 789999999999999999987777777765 479999999999998886543333333332 57
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
++++++|+||.+|++|+|+||+++ ++++++.+.+....++.+++.|.++..++...+ .+.+ ..+.+.++++.+.+
T Consensus 207 ~vi~~~S~SK~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~~---~~~~-~~~~~~~~r~~~~~ 281 (352)
T PRK03321 207 NVVVLRTFSKAYGLAGLRVGYAVG-HPEVIAALRKVAVPFSVNSLAQAAAIASLAAED---ELLE-RVDAVVAERDRVRA 281 (352)
T ss_pred CEEEEecchHHhhhHHHhhhhhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH---HHHH-HHHHHHHHHHHHHH
Confidence 899999999999999999999998 789999998877778889999998888886533 2222 33344556677889
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|++.|+.... .+|+|+|++++. +..++.+.| +++||.+.| |+ +.++||+++ ++++.+++++
T Consensus 282 ~L~~~~~~~~~-~~g~~i~i~l~~--------~~~~~~~~l-~~~gI~v~~---~~---~~~iRi~~~--~~~~~~~~~~ 343 (352)
T PRK03321 282 ALRAAGWTVPP-SQANFVWLPLGE--------RTADFAAAA-AEAGVVVRP---FA---GEGVRVTIG--APEENDAFLR 343 (352)
T ss_pred HHHHCCCccCC-CCCCEEEEeCCC--------CHHHHHHHH-HHCCEEEEc---cC---CCcEEEeeC--CHHHHHHHHH
Confidence 99888877544 467889998853 235788885 668999987 32 356999997 8999999999
Q ss_pred HHHHHHH
Q 019899 325 RIQKVAE 331 (334)
Q Consensus 325 ~l~~~~~ 331 (334)
+|++++.
T Consensus 344 al~~~~~ 350 (352)
T PRK03321 344 AARAWRA 350 (352)
T ss_pred HHHHHhc
Confidence 9998764
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=276.35 Aligned_cols=277 Identities=21% Similarity=0.332 Sum_probs=225.3
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..+... +.+| +|++++|+|..+...++ ..|.+++.++ |++++
T Consensus 52 lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~-~~g~~~~~~~---------d~~~l 119 (330)
T TIGR01140 52 LRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWR-AAGHEVVELP---------DLDRL 119 (330)
T ss_pred HHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHH-HcCCEEEEeC---------CHHHH
Confidence 34444455567889999999999999998666 4677 69999999999999998 8999998886 67888
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++.++ +++++++++|+||||.+++.+++++|+++|+++|++||+|++|..+.+.. ++..... ..+
T Consensus 120 ~~~~~-------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~----~~~~~~~----~~~ 184 (330)
T TIGR01140 120 PAALE-------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA----SLAPQAA----RFP 184 (330)
T ss_pred Hhhcc-------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc----chhhHhc----cCC
Confidence 88874 46789999999999999999999999999999999999999999876531 2222211 157
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.|+||.+|++|+|+||+++ ++++++.+......++.++++|.++..++.+.++ ..+.+++++.+++.+.+
T Consensus 185 ~~i~~~S~SK~~g~~G~R~G~i~~-~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~ 259 (330)
T TIGR01140 185 GLVVLRSLTKFFGLAGLRLGFVVA-HPALLARLREALGPWTVNGPARAAGRAALADTAW----QAATRARLAAERARLAA 259 (330)
T ss_pred CEEEEEecchhhcCchhhhhheeC-CHHHHHHHHhcCCCCCchHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998 7889899988877788899999999999986543 34567889999999999
Q ss_pred HHHhCC-CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHH
Q 019899 245 GLKQLG-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVI 323 (334)
Q Consensus 245 ~l~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l 323 (334)
.|++++ ++. .+.+++|+|++++. ..++.++|++ +||.+.||..|+....+++|++++ ...++ +.++
T Consensus 260 ~L~~~~~~~~-~~~~~~f~~~~~~~---------~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~-~~~~ 326 (330)
T TIGR01140 260 LLARLGGLEV-VGGTALFLLVRTPD---------AAALHEALAR-RGILIRDFDNFPGLDPRYLRFALP-TDEEN-DRLE 326 (330)
T ss_pred HHHhCCCceE-CCCCCeEEEEEcCC---------HHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEec-CHHHH-HHHH
Confidence 999986 544 44578999998763 2578888665 799999999986445679999998 33333 6666
Q ss_pred HHH
Q 019899 324 ERI 326 (334)
Q Consensus 324 ~~l 326 (334)
++|
T Consensus 327 ~~l 329 (330)
T TIGR01140 327 EAL 329 (330)
T ss_pred Hhh
Confidence 654
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=263.79 Aligned_cols=307 Identities=21% Similarity=0.273 Sum_probs=245.2
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc---C
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR---G 95 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~---~ 95 (334)
+|++|+|.|.++..+++.++++||.|+++.++|++..+.++ ..|+++++|++ +..++++|.|++.+.+.+.. .
T Consensus 126 diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~-a~gv~~ipv~m---d~~Gi~pE~l~~il~~w~~~~~k~ 201 (472)
T KOG0634|consen 126 DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSME-ALGVKIIPVKM---DQDGIDPESLEEILSNWKPGSYKK 201 (472)
T ss_pred eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhcc-ccCceEEeccc---cCCCCCHHHHHHHHhcCCcccccC
Confidence 89999999999999999999999999999999999999999 99999999997 56689999999999877543 2
Q ss_pred CceeEEEEeCC--CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCC--------CCcch----hhhhhhc-cc
Q 019899 96 VKVRGILICNP--ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGN--------EEFVS----MAEILEA-EE 160 (334)
Q Consensus 96 ~~~~~i~~~~p--~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~--------~~~~~----~~~~~~~-~~ 160 (334)
.+++ |+++.| +||||..++.+..++|.++|++|+++||+||.|..+.++. .+..+ ...+.+. ..
T Consensus 202 ~~p~-vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sfls 280 (472)
T KOG0634|consen 202 PKPH-VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLS 280 (472)
T ss_pred CCCe-EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCccc
Confidence 3466 777878 8999999999999999999999999999999999887752 11111 1111111 12
Q ss_pred cC-CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChH--HHHHHHHHHHHHH
Q 019899 161 VD-KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTK--FIQEYLETNKRRI 235 (334)
Q Consensus 161 ~~-~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~ 235 (334)
++ .++|+-..||||.++ ||+|+||+.+ ++.+++++-..... .++|...|..+.+++.... ...+|+.+.+..+
T Consensus 281 lDtdGrVIr~dSFSKiia-PGlRlG~it~-~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Y 358 (472)
T KOG0634|consen 281 LDTDGRVIRNDSFSKIIA-PGLRLGWITG-NSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSY 358 (472)
T ss_pred ccccccEEeccchhhhhc-CcceeEEeec-CHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 899999999999997 9999999998 77776766554332 3467778877777776421 1247789999999
Q ss_pred HHHHHHHHHHHHhC---C-CcccCCCceeEEeeecCCcCCC---CChhhHHHHHHHHHHhcCeEEcCCCCcCCC-C---C
Q 019899 236 KKLYDSFVAGLKQL---G-IRCSESSAGLYCWADMSGLIPS---YSEKGELELWDKLLNIAKINVTPGSACHCI-E---P 304 (334)
Q Consensus 236 ~~~~~~~~~~l~~~---g-~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~---~ 304 (334)
..+++.+...|.+. . +++..|.+|||+|++++ .+.. +..-...+.....+.++||.+.+|..|... . +
T Consensus 359 t~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~-~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~ 437 (472)
T KOG0634|consen 359 TERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIP-YINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWS 437 (472)
T ss_pred HHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEec-ccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCC
Confidence 99999999999875 4 67779999999999998 1111 111124566666678899999999998654 1 2
Q ss_pred -CeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 305 -GWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 305 -~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
-++|++++..++++++++++++..+++++
T Consensus 438 kiffRls~a~a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 438 KIFFRLSIAFAEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred cceEEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 38999999779999999999999999875
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=270.11 Aligned_cols=276 Identities=19% Similarity=0.331 Sum_probs=216.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++..+ +||+|+++.|+|+.+...++ ..|.+++.++++ +++.+|++.+
T Consensus 60 lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~l 134 (337)
T PRK03967 60 LREAIAEFYGLDAENIAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYSFYAK-LNGIPVIDVPLK--EDFTIDGERI 134 (337)
T ss_pred HHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHH-HcCCeEEEeecC--CCCCcCHHHH
Confidence 455555556688999999999999999988776 79999999999998888777 899999999984 4468999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++.+. +++++++++|+||||.+++.+++.++ + ++++++|+||+|.+|.. .... .... ..+
T Consensus 135 ~~~~~-------~~~~v~~~~P~NPtG~~~~~~~l~~i---~-~~~~~ii~De~y~~~~~--~~~~---~~~~----~~~ 194 (337)
T PRK03967 135 AEKAK-------NASAVFICSPNNPTGNLQPEEEILKV---L-ETGKPVVLDEAYAEFSG--KSLI---GLID----EYP 194 (337)
T ss_pred HHhcc-------CCCEEEEeCCCCCCCCCCCHHHHHHH---H-hcCCEEEEECchhhhcc--cchH---HHHh----hCC
Confidence 87642 67889999999999999996655554 4 47999999999998652 1222 2221 146
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
++++++||||.+|++|+|+||+++ ++++++.+.+....++.+.+.|.++..+++..++ ..+..+.+.++++.+.+
T Consensus 195 ~vi~l~S~SK~~~l~GlRiG~iv~-~~~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~ 269 (337)
T PRK03967 195 NLILLRTFSKAFGLAGIRAGYAIA-NEEIIDALYRIKPPFSLNILTMKIVRLALDHYDL----IEERIDYIIKERERVRR 269 (337)
T ss_pred CEEEEecchHhhcchhhhheeeec-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHH
Confidence 799999999999999999999998 8899999988777788899999999999976443 33444455666778888
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|.+. ..+.+++|+|++++ +.+.|+ ++||.++++... ..+++|++++ ++++.+++++
T Consensus 270 ~L~~~----~~~~~~~~~~~~~~-------------~~~~l~-~~gi~v~~~~~~---~~~~~Ri~~~--~~~~~~~l~~ 326 (337)
T PRK03967 270 ELGEY----AYPSDANFLLLKLD-------------AYDYLL-ENGIVVRKLSGR---LEGHIRVTVG--KREENDEFIK 326 (337)
T ss_pred HhccC----cCCCCCcEEEEhHH-------------HHHHHH-HCCEEEEeCCCC---CCCeEEEecC--CHHHHHHHHH
Confidence 88764 24578889998763 456645 479999875422 3579999998 6788888999
Q ss_pred HHHHHHHHc
Q 019899 325 RIQKVAETC 333 (334)
Q Consensus 325 ~l~~~~~~~ 333 (334)
.|+++.+.+
T Consensus 327 ~l~~~~~~~ 335 (337)
T PRK03967 327 ALKEIKEGY 335 (337)
T ss_pred HHHHHHHhc
Confidence 998887764
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=263.34 Aligned_cols=255 Identities=22% Similarity=0.309 Sum_probs=197.4
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCc
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVK 97 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 97 (334)
++|++|+|+++++..++..+. +||+|++++|+|+.+...++ ..|.+++.++ +|++.+++.++ +
T Consensus 55 ~~I~vt~G~~~al~~~~~~~~-~gd~vlv~~P~y~~~~~~~~-~~g~~~~~~~--------~d~~~l~~~~~-------~ 117 (311)
T PRK08354 55 EPIVITAGITEALYLIGILAL-RDRKVIIPRHTYGEYERVAR-FFAARIIKGP--------NDPEKLEELVE-------R 117 (311)
T ss_pred CCEEECCCHHHHHHHHHHhhC-CCCeEEEeCCCcHHHHHHHH-HcCCEEeecC--------CCHHHHHHhhc-------C
Confidence 579999999999998886544 89999999999999999999 9999997764 46788887765 3
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCC
Q 019899 98 VRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLS 177 (334)
Q Consensus 98 ~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~ 177 (334)
++++++++|+||||.+++.+++++|+++|+++++++|+||+|.+|.+++.. . . .+++++++||||.++
T Consensus 118 ~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~---~----~-----~~~vi~~~S~SK~~~ 185 (311)
T PRK08354 118 NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES---P----E-----GENIIKLRTFTKSYG 185 (311)
T ss_pred CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc---c----C-----CCcEEEEeccHhhcC
Confidence 567999999999999999999999999999999999999999998875421 1 1 568999999999999
Q ss_pred CCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Q 019899 178 LPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS 257 (334)
Q Consensus 178 ~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 257 (334)
++|+|+||+++ +.+.++.....+..+...+.++..++.. . .+++.+.++.+.+.++.+.+.+ ...+.
T Consensus 186 l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~l------~~~~~ 252 (311)
T PRK08354 186 LPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIED-D--FEHLRKTMPLIWREKERFEKAL------YVKSD 252 (311)
T ss_pred Cccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHh-H--HHHHHHHHHHHHHHHHHHHHhc------CCCCC
Confidence 99999999998 4566766666777777777777776653 2 1333444555555555444433 23456
Q ss_pred ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHH
Q 019899 258 AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329 (334)
Q Consensus 258 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~ 329 (334)
+++++ ++++. +.++++.| .++||.+.||..|+. ++++||+++ .+++.+++++.|+++
T Consensus 253 ~~~~~-~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRi~~~--~~~~~~~l~~al~~~ 309 (311)
T PRK08354 253 ANFFI-KDVGD---------AEKFVEFL-KRNGILVRDCTSFGL--PGYIRFSVR--DREENEKLIRALREW 309 (311)
T ss_pred CcEEE-EECCC---------HHHHHHHH-HHCCeEEEecccCCC--CCeEEEEeC--CHHHHHHHHHHHHHh
Confidence 66655 55542 35777775 558999999999863 689999998 566677777777654
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=264.63 Aligned_cols=261 Identities=18% Similarity=0.305 Sum_probs=206.9
Q ss_pred CCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 15 FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 15 ~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
+++++|++|+|+++++..++.++ |.|++++|+|+.+...++ ..|.+++.+|+++ ++.++... ++
T Consensus 74 ~~~~~i~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~~~~-~~g~~~~~v~~~~--~~~~~~~~----~~----- 137 (335)
T PRK14808 74 LSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAK-AVGAKFLEVPLTK--DLRIPEVN----VG----- 137 (335)
T ss_pred CCcceEEEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHHHHH-HcCCeEEEecCCC--cCCCChhH----cc-----
Confidence 78999999999999999999987 679999999999999999 9999999999843 33443221 21
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
+++++++++|+||||.+++.+++++|+ +++++||+||+|.+|. +.... ++..+ .+++++++||||
T Consensus 138 --~~~~i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~~~~~---~~~~~----~~~vi~~~S~SK 202 (335)
T PRK14808 138 --EGDVVFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--GESYV---DLLKK----YENLAVIRTFSK 202 (335)
T ss_pred --CCCEEEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--CCchH---HHHHh----CCCEEEEEechh
Confidence 468999999999999999988777775 4799999999999864 22222 22221 568999999999
Q ss_pred cCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 019899 175 DLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS 254 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 254 (334)
.++++|+|+||+++ ++++++.+.+....++.+.++|.++..++...+ +..+..+.+.++++++.+.|++.|+++.
T Consensus 203 ~~~l~GlRvG~~v~-~~~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 277 (335)
T PRK14808 203 AFSLAAQRIGYVVS-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREMGYRIT 277 (335)
T ss_pred hccCcccceEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHHCCCEEC
Confidence 99999999999998 788999998777678889999998888876533 3455566777778899999999898877
Q ss_pred CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHH
Q 019899 255 ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329 (334)
Q Consensus 255 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~ 329 (334)
.+.+ .|+|+.++.. +..++.+. +.++||.++. | .+++|++++ ++++.+++++.|+++
T Consensus 278 ~~~g-~f~~~~l~~~-------~~~~~~~~-l~~~Gi~V~~---~----~~~~Risi~--~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 278 DSRG-NFVFIFMEKE-------EKERLLEH-LRAKNIAVRS---F----REGVRITIG--KREENDMILKELEVF 334 (335)
T ss_pred CCCC-eEEEEeCCCc-------cHHHHHHH-HHHCCeEEEE---C----CCCeEEecC--CHHHHHHHHHHHHhh
Confidence 7754 5678988742 23466666 5558999984 3 368999998 788899999988753
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=258.06 Aligned_cols=301 Identities=31% Similarity=0.516 Sum_probs=238.9
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++++....+ +....+++++++|+++++..++.++.++||+|+++.++|.++...++ ..|.+++.++.++......+.
T Consensus 46 ~~~l~~~~~--~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 122 (350)
T cd00609 46 AEWLGRRGG--VDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAAR-LAGAEVVPVPLDEEGGFLLDL 122 (350)
T ss_pred HHHHHHHhC--CCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-HCCCEEEEEecccccCCccCH
Confidence 344444443 34457799999999999999999999999999999999999999999 899999999985444333222
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+.+++...+ +++++++++|+||||.++|.+++++|+++|+++|+++|+|++|+.+.+.+..........
T Consensus 123 ~~~~~~~~~------~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~----- 191 (350)
T cd00609 123 ELLEAAKTP------KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLD----- 191 (350)
T ss_pred HHHHhhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcC-----
Confidence 444444433 789999999999999999999999999999999999999999998776544332111121
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
..+.++++.|++|.++.+|.++|+++++++++.+.++..... ++.+...+.++..++.... ++..+.++++.+++
T Consensus 192 ~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~ 268 (350)
T cd00609 192 AYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE---EHLEELRERYRRRR 268 (350)
T ss_pred ccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH---HHHHHHHHHHHHHH
Confidence 267789999999999889999999998443888888766544 5778888888888887653 55677888999999
Q ss_pred HHHHHHHHhCCCcc-cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 240 DSFVAGLKQLGIRC-SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 240 ~~~~~~l~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
+++.+.|++.+... ..+..++++|++++... ..+...++++++||.+.++..|....+.++|++++.. ++|
T Consensus 269 ~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~ 340 (350)
T cd00609 269 DALLEALKELGPLVVVKPSGGFFLWLDLPEGD-------DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEE 340 (350)
T ss_pred HHHHHHHHhcCCccccCCCccEEEEEecCCCC-------hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHH
Confidence 99999999986554 56678899999987641 2456677788899999998877644578999999955 999
Q ss_pred HHHHHHHHH
Q 019899 319 IPLVIERIQ 327 (334)
Q Consensus 319 l~~~l~~l~ 327 (334)
++.++++|+
T Consensus 341 i~~~~~al~ 349 (350)
T cd00609 341 LEEALERLA 349 (350)
T ss_pred HHHHHHHhh
Confidence 999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=215.16 Aligned_cols=297 Identities=19% Similarity=0.319 Sum_probs=235.3
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCC-CeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHG-NALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~g-d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
++...++--+..+|+|++..|+-+.+.+++++.|.|| ++|++-.|+|.-|.-.+. ..+++|+.+|+ +.+|++|+++
T Consensus 74 ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~-iNd~eVvkvpl--~pdF~lnvda 150 (375)
T KOG0633|consen 74 LSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAA-INDAEVVKVPL--NPDFSLNVDA 150 (375)
T ss_pred hhhhcccCCCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEee-cCCceEEEecC--CCCccccHHH
Confidence 3444444467889999999999999999999999999 899999999998887777 78999999999 4578999999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+.+.++.. ..+|++++++|+||||..+..+++.+|.+.- .+.+|++||+|.+|+-.+. -..+.. ++
T Consensus 151 i~evl~~d----s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p--~nglVVvDEAYidFsg~~S----~~~lV~----kY 216 (375)
T KOG0633|consen 151 IAEVLELD----SKIKCIFLTSPGNPTGSIIKEDDILKILEMP--DNGLVVVDEAYIDFSGVES----RMKLVK----KY 216 (375)
T ss_pred HHHHHhcc----ccceEEEEcCCCCCCcccccHHHHHHHHhCC--CCcEEEEeeeeEeeccccc----cchHhH----hC
Confidence 99998763 4799999999999999999999999998743 3889999999999763222 222333 27
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
.+.+++.++||++|++|+|+|+... ...+.+.+-+.+++++.|.+...++..++.... -+.++..++.+.+.+.++.
T Consensus 217 pNLivlqTlSKsfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n--~kkme~~rdaiv~er~RL~ 293 (375)
T KOG0633|consen 217 PNLIVLQTLSKSFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN--GKKMEDVRDAIVRERERLF 293 (375)
T ss_pred CceeehhhhhhhcCcceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--chHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998 888999999999999999888888888887432 2345677788888889999
Q ss_pred HHHHhCC-Cc-ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC-CCCcCCCCCCeEEEEecCCCcccHH
Q 019899 244 AGLKQLG-IR-CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP-GSACHCIEPGWFRCCFTSLTHEDIP 320 (334)
Q Consensus 244 ~~l~~~g-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~~~~~~~~~iRi~~~~~~~~~l~ 320 (334)
..|.+.. +. +..+....|+.+++....+ . -+..+...++...|+.++- |+.-+. .+++|++++ ++|+-.
T Consensus 294 keLt~v~~~~~~~gg~daNFiLi~v~~~~n---~-~akkly~q~at~~gVvVRfrgse~~c--~G~lRitvG--t~Eent 365 (375)
T KOG0633|consen 294 KELTEVPFLNDYPGGSDANFILIEVTGGDN---G-MAKKLYKQDATKMGVVVRFRGSEEGC--KGYLRITVG--TPEENT 365 (375)
T ss_pred HHhhcCccccCCCCcccccEEEEEEcCCCc---H-HHHHHHHHHHHhcceEEEEcCCcccc--ceeEEEEcC--Ccccch
Confidence 9998863 32 3344444455577664322 2 2345666667779999873 333222 689999999 889999
Q ss_pred HHHHHHHHH
Q 019899 321 LVIERIQKV 329 (334)
Q Consensus 321 ~~l~~l~~~ 329 (334)
.+++.++++
T Consensus 366 vL~k~~K~~ 374 (375)
T KOG0633|consen 366 VLMKCLKQF 374 (375)
T ss_pred HHHHHHHhh
Confidence 999999876
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=245.13 Aligned_cols=293 Identities=17% Similarity=0.193 Sum_probs=219.2
Q ss_pred hhhhhhcCCCCC-CCCcEEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCCh----hhhhhhccCcEEEEEeCCCC
Q 019899 4 FMSQVLGQAVSF-DPSQIVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGF----DRDIRFRTGVELIPVHCRST 74 (334)
Q Consensus 4 ~~~~~~~~~~~~-~~~~i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~----~~~~~~~~g~~v~~v~~~~~ 74 (334)
.+++.+++.+++ ++++|++++|++++++.++.++ +++||+|++++++|++. ...++ ..|.+++.++++
T Consensus 67 ~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~-~~g~~v~~v~~~-- 143 (401)
T PRK10874 67 AAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQ-QTGAKVVKLPLG-- 143 (401)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHH-HhCCEEEEEecC--
Confidence 355667777888 7889999999999999999997 37899999999999763 33445 679999999984
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
.++.+|++++++++++ +++++++++|+||||.++| +++|+++|+++|+++++|++|+...+ ..++..
T Consensus 144 ~~~~~d~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~----~~~~~~ 210 (401)
T PRK10874 144 ADRLPDVDLLPELITP------RTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHF----PADVQA 210 (401)
T ss_pred CCCcCCHHHHHHhcCc------CcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccccc----cCCchh
Confidence 4567899999999976 8899999999999999999 88999999999999999999865322 122211
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-----------------------cccCCChHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-----------------------RFCSISAPTQ 211 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 211 (334)
.+.++++.|++|.+|++| +|+++. ++++++.+.... ..++.+...+
T Consensus 211 --------~~~d~~~~s~~K~~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~ 279 (401)
T PRK10874 211 --------LDIDFYAFSGHKLYGPTG--IGVLYG-KSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGV 279 (401)
T ss_pred --------cCCCEEEEecccccCCCc--cEEEEE-chHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHH
Confidence 356678899999888666 599988 777766653211 0123444566
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcC
Q 019899 212 RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAK 290 (334)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 290 (334)
.++..+++... +....+..++..+.++++.+.|+++ |++...+..+.++++.++.. +..++.+. |+++|
T Consensus 280 ~al~~al~~l~--~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-------~~~~~~~~-L~~~g 349 (401)
T PRK10874 280 IGLSAALEWLA--DIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-------HHSDLVTL-LAEYG 349 (401)
T ss_pred HHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-------CHHHHHHH-HHHCC
Confidence 66666664321 1223456677888889999999887 78776555555566666542 23567766 56689
Q ss_pred eEEcCCCCcCC------CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 291 INVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 291 i~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
|.+.+|..|.. ...+++|+|++. .+++|++++++.|+++++.+
T Consensus 350 I~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 350 IALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred cEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 99999887642 125789999996 59999999999999988764
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=226.86 Aligned_cols=329 Identities=22% Similarity=0.354 Sum_probs=247.9
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+|+|+.+|-| +++++++|++|.|++.|+..++..++ .+.+.|++|-|.|+-|...+. ..|...+.+-++++.+|.+
T Consensus 122 VA~~I~rRDG--~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~-l~~~~~v~YyLdEe~~W~l 198 (475)
T KOG0258|consen 122 VAEFIERRDG--IPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATIS-LLGGTQVPYYLDEESNWSL 198 (475)
T ss_pred HHHHHHhccC--CCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHH-HhCCcccceeeccccCCCC
Confidence 5789998877 89999999999999999999998885 567899999999999999999 8888888888888999999
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC-Ccchhhhhhhc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~-~~~~~~~~~~~ 158 (334)
|.++|++.+++++ .+-++++++++||.||||.+++.+.+++|+.+|.++++.++.||+|++..|... .+-+++....+
T Consensus 199 d~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~e 277 (475)
T KOG0258|consen 199 DVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHE 277 (475)
T ss_pred CHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHH
Confidence 9999999999987 667899999999999999999999999999999999999999999999998754 67777776665
Q ss_pred cc-cCCCcE--EEEecccccC-CCCCceEEEEe--ecCHHHHHHHHHhhcc-cCCChHHHHHHHHhhCC-------hHHH
Q 019899 159 EE-VDKDRV--HIIYGLSKDL-SLPGFRTGVIY--SYNESVLAAAKKLTRF-CSISAPTQRLLISMLSD-------TKFI 224 (334)
Q Consensus 159 ~~-~~~~~~--~~~~s~sK~~-~~~g~r~g~i~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~-------~~~~ 224 (334)
.+ ...+++ +.++|.||.+ |-+|.|.||.- -.+++..+.+.+.... ...+...|...-....- .+..
T Consensus 278 mg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~ 357 (475)
T KOG0258|consen 278 MGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLF 357 (475)
T ss_pred hcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhh
Confidence 11 112343 5567889888 66789999963 3577777777665443 34444555544444431 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCC------CCChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIP------SYSEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
..........+++++..+.+.+..+ |+.+..+.|.||++-.+.-+.. ......+.-.+.+||+..||.+.||+
T Consensus 358 ~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGS 437 (475)
T KOG0258|consen 358 SSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGS 437 (475)
T ss_pred hhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCC
Confidence 2233556777888888888999887 8999999999998755432211 01112334467899999999999999
Q ss_pred CcCCCCCC-eEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 298 ACHCIEPG-WFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 298 ~~~~~~~~-~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.||..... ++|..+-....+-++++-+--.++++++
T Consensus 438 GFGQ~~GtyH~R~TiLp~~~~~i~~~~~fH~~f~~~Y 474 (475)
T KOG0258|consen 438 GFGQKEGTYHFRTTILPPGLEIIEKFKKFHAEFMDEY 474 (475)
T ss_pred CCCCCCceeEEEEeecCchhHHHHHHHHHHHHHHHhh
Confidence 99985443 5888875222233444444344444443
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=242.69 Aligned_cols=292 Identities=17% Similarity=0.172 Sum_probs=216.6
Q ss_pred hhhhhcCCCCCC-CCcEEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCCh----hhhhhhccCcEEEEEeCCCCC
Q 019899 5 MSQVLGQAVSFD-PSQIVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGF----DRDIRFRTGVELIPVHCRSTD 75 (334)
Q Consensus 5 ~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~----~~~~~~~~g~~v~~v~~~~~~ 75 (334)
+++.+++.++++ +++|++|+|+|++++.++.++ +++||+|++++|+|++. ...++ ..|.+++.++++ .
T Consensus 65 ~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~-~~g~~v~~v~~~--~ 141 (398)
T TIGR03392 65 ARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQ-QTGAKVVKLPIG--A 141 (398)
T ss_pred HHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHH-HcCcEEEEEecC--C
Confidence 556667777774 789999999999999999987 47899999999999873 33445 789999999984 3
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
++.+|++++++++++ +++++++++|+||||.+.| +++|+++|+++|+++++|++|+...+ ...+..
T Consensus 142 ~~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~----~~~~~~- 207 (398)
T TIGR03392 142 DLLPDIRQLPELLTP------RTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHG----PPDVQA- 207 (398)
T ss_pred CCCcCHHHHHHHhcc------CceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCC----CCChhh-
Confidence 457899999999976 7899999999999999999 88999999999999999999975332 122221
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-----------------------cccCCChHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-----------------------RFCSISAPTQR 212 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 212 (334)
.+.++++.|++|.+|++| +||++. ++++.+.+.... ..++.+.....
T Consensus 208 -------~~~d~~~~s~~K~~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~ 277 (398)
T TIGR03392 208 -------LDIDFYAFSGHKLYGPTG--IGVLYG-KTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVI 277 (398)
T ss_pred -------cCCCEEEEecccccCCCc--eEEEEE-cHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHH
Confidence 345678889999888555 899998 677766653211 01233444555
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe
Q 019899 213 LLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI 291 (334)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi 291 (334)
++..+++... +....+..++..+.++++.+.|+++ |+++..+..+.++++.++.. +..++... |+++||
T Consensus 278 a~~~al~~l~--~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-------~~~~l~~~-L~~~gI 347 (398)
T TIGR03392 278 GLSAALEWLT--DIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-------HHSDLAAL-LAESGI 347 (398)
T ss_pred HHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-------CHHHHHHH-HHhCCE
Confidence 5555553211 1123456677788888999999887 77766544555666666532 23567777 566899
Q ss_pred EEcCCCCcCC------CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 292 NVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 292 ~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+++|..|.. ..++++|+|++. .|++|++++++.|++++++.
T Consensus 348 ~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 348 ALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred EEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 9999887642 125799999986 69999999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=233.87 Aligned_cols=279 Identities=13% Similarity=0.156 Sum_probs=208.9
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEec---CCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVP---SPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~---~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
-+.+.+++.++++++++++++|+++++..++.+++++||+|+++ .|+|.++...++ ..|.+++.+ .+
T Consensus 58 ~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~-l~ga~~~~~---------~~ 127 (346)
T TIGR03576 58 KVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCK-LAGAEYFES---------DE 127 (346)
T ss_pred HHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHH-HcCCEEecc---------CC
Confidence 35556666677888999999999999999999999999999975 479999989888 888876432 13
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++. . .++++|+++ +.+|+|.+++.+++++|+++|+++|++|++||+|+.+..+.....+...
T Consensus 128 l~~l~~-~-------~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~------ 192 (346)
T TIGR03576 128 LSELKK-I-------DGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALD------ 192 (346)
T ss_pred HHHHhh-C-------cCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHH------
Confidence 444321 1 256766664 5789999999999999999999999999999999986532111111111
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+..++++|+||+ ++|+|+||+++ ++++++.+.+....+ +.+++.+.++..+++... ...+++.++++
T Consensus 193 --~~~divv~s~SKa--laG~r~G~v~~-~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~-----~~~~~~~l~~r 262 (346)
T TIGR03576 193 --LGADLVVTSTDKL--MDGPRGGLLAG-RKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE-----LSRIRDAFKRK 262 (346)
T ss_pred --cCCcEEEeccchh--ccccceEEEEe-CHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhcc-----HHHHHHHHHHH
Confidence 2234677899994 58899999998 889999998876654 467888888888875422 13456778888
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc-
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE- 317 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~- 317 (334)
++.+.+.+++ +.+..+.++ |+|++++.. ++.+++..+++++||.++|+..|. ..++|+||+++ +++
T Consensus 263 ~~~~~~~l~~--~~~~~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~~~~~vRis~~--~~~~ 329 (346)
T TIGR03576 263 EEVYLRLFDK--LNVERTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-GASKTLRFDLA--AKDA 329 (346)
T ss_pred HHHHHHHHHh--CCCCcCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-CCCCeEEEEEe--cChH
Confidence 8888888874 454445555 688888742 234777888999999999998773 23679999999 344
Q ss_pred ---cHHHHHHHHHHHH
Q 019899 318 ---DIPLVIERIQKVA 330 (334)
Q Consensus 318 ---~l~~~l~~l~~~~ 330 (334)
+.+.+++.|++.+
T Consensus 330 ~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 330 ERIGDDYLVEAVKDSL 345 (346)
T ss_pred HhcCHHHHHHHHHhcc
Confidence 7999999988754
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=237.08 Aligned_cols=298 Identities=15% Similarity=0.197 Sum_probs=213.4
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
++.+++.+++ +.+.+++|+++++..++.+++++||+|+++.+.|.+....++ ..|++++.++...++++.+|+++++
T Consensus 57 ~e~lA~~~g~--~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~ 133 (370)
T TIGR02539 57 LEDLAEFLGM--DEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAE-RAGLNVKEVPHTGHPEYKVDPEGYG 133 (370)
T ss_pred HHHHHHHhCC--CceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHH-HcCCEEEEEecCCcccCCcCHHHHH
Confidence 4445555554 456779999999999999999999999999999887777777 8999999999754456789999999
Q ss_pred HHHHHHHHc-CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 86 QAFNQARKR-GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 86 ~~l~~~~~~-~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
+++++.... ..++++|++++|+||+|...+ +++|.++|+++|+++++|++|+.+.. ..+.. . .+
T Consensus 134 ~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~----~~~~~---~-----~~ 198 (370)
T TIGR02539 134 EVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRM----PVSAK---E-----IG 198 (370)
T ss_pred HHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCc----CCCHH---H-----cC
Confidence 999753221 136789999999999999999 88999999999999999999986321 11111 1 34
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChH----------HHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAP----------TQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
.+++++|+||+++ +|.|+||+++ ++++++.++....++..+.. .+.++...+.. ..+++.+..+.
T Consensus 199 ~di~v~s~sK~~~-~~g~~G~l~~-~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~l~~~~~~ 273 (370)
T TIGR02539 199 ADFIVGSGHKSMA-ASGPCGVLGM-SEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH---VVERVKRWDEE 273 (370)
T ss_pred CCEEEeeCccccc-CCCCEEEEEE-CHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5677899999998 6778999998 88898888776554332221 33333333321 13344444444
Q ss_pred HHHHHHHHHHHHHhCCCccc--CCCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeE-EcCCCCcCCCCCCeEEE
Q 019899 235 IKKLYDSFVAGLKQLGIRCS--ESSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKIN-VTPGSACHCIEPGWFRC 309 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~g~~~~--~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~-v~~g~~~~~~~~~~iRi 309 (334)
+.. .+++.+.|+++|+++. .+..+.++++++|.... .........+.+. |.++||. ++++. ++++|+
T Consensus 274 ~~~-~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~-L~e~GI~~ir~~~------~~~iRi 345 (370)
T TIGR02539 274 VKK-TRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEE-LKKRGIHGIRSGQ------TKYFKL 345 (370)
T ss_pred HHH-HHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHH-HHhCCCccccCCc------ceEEEE
Confidence 444 5689999999998863 34556677788763210 0011123456666 5557997 55422 468999
Q ss_pred EecCCCcccHHHHHHHHHHHHHHcC
Q 019899 310 CFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 310 ~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
++...++++++++++.|++++++++
T Consensus 346 s~~~~t~e~i~~l~~~L~~~~~~~~ 370 (370)
T TIGR02539 346 SVYGLTKEQVEYVVDSFEEIVEEYE 370 (370)
T ss_pred EecCCCHHHHHHHHHHHHHHHHhcC
Confidence 9744699999999999999988753
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=236.66 Aligned_cols=313 Identities=16% Similarity=0.168 Sum_probs=222.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCC------CCcc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST------DNFA 78 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~------~~~~ 78 (334)
+++.+++.++ .+++++|+|+++|+.+++.+++++|| |++++|.|..+...+. ..|.+++.+++.+. +++.
T Consensus 83 Lreaia~~~~--~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~-~~G~~~v~v~~~~~~~~~~~~~f~ 158 (460)
T PRK13238 83 LEDAVKDIFG--YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIE-LNGATAVDLVIDEALDTGSRHPFK 158 (460)
T ss_pred HHHHHHHHhC--CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHH-HcCCEEEEEecccccccccccccc
Confidence 3444444443 46799999999999999999999999 9999999999988888 89999999998532 3444
Q ss_pred --ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCcEEEEeccccc--cccC-----CCC
Q 019899 79 --FSITALDQAFNQARKRGVKVRGILICNPANPVG-NIIPRETLYELLDFAREKNIHVISDEIYGG--SIFG-----NEE 148 (334)
Q Consensus 79 --~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG-~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~--~~~~-----~~~ 148 (334)
+|+++|++++++.. ..++++|++++|+|||| .+++.+++++|.++|++||++||+|+++.. ..|. +..
T Consensus 159 g~id~e~Le~~i~~~~--~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~ 236 (460)
T PRK13238 159 GNFDLEKLEALIEEVG--AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYK 236 (460)
T ss_pred CCcCHHHHHHHHhhcC--CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhcccccc
Confidence 99999999998521 02689999999999997 999999999999999999999999997632 2232 112
Q ss_pred cchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh----c--ccCC-ChHHHHHHHHhhCCh
Q 019899 149 FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT----R--FCSI-SAPTQRLLISMLSDT 221 (334)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~----~--~~~~-~~~~~~~~~~~l~~~ 221 (334)
..++.++... +-...+.+..|..|... .+. .|+++++++++.+.++... . .++. +...|.+++..+.+.
T Consensus 237 ~~si~~i~~~--~~s~~D~~~~Sg~K~g~-~~~-GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~ 312 (460)
T PRK13238 237 DKSIKEIARE--MFSYADGLTMSAKKDAM-VNI-GGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEG 312 (460)
T ss_pred CCCHHHHhhh--hcccCcEEEEecccCCC-Ccc-eeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHh
Confidence 2333322110 00112234445666543 222 3677775578888887652 1 2333 444477777666431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 222 KFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
.. +++...+ .++++++.+.|.+.|+++..|.+|+++++++...... .....+.+++.+|+++.||.+.|++.|
T Consensus 313 ~~-~~~~~~~----~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f 387 (460)
T PRK13238 313 MD-EDYLAYR----IGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSL 387 (460)
T ss_pred hC-hHHHHHH----HHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccce
Confidence 10 2222222 3357899999999999999999999999998754221 112234789999999999999998876
Q ss_pred CCCC-----------CCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 300 HCIE-----------PGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~~~~-----------~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
.... .+.+|++++. .+++.++.+.++|+++.++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 388 LLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred ecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 5432 3689999993 3999999999999988754
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-30 Score=228.89 Aligned_cols=293 Identities=19% Similarity=0.178 Sum_probs=212.2
Q ss_pred hhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
.+++.+++.++++++ .+++++|+++++..++.+++++||+|+++.++|++ +...++ ..|.+++.+|.+ .++.+|
T Consensus 36 ~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~~ 112 (356)
T cd06451 36 EILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAE-RYGADVDVVEKP--WGEAVS 112 (356)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHH-HhCCCeEEeecC--CCCCCC
Confidence 344555555666544 57888889999999999999999999999988776 345566 789999999974 346899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++.+++. +++++++++|+||+|.+.| +++|.++|+++|+++++|++|+. |....++. .
T Consensus 113 ~~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~~----g~~~~~~~---~--- 174 (356)
T cd06451 113 PEEIAEALEQH-----DIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSSL----GGEPFRMD---E--- 174 (356)
T ss_pred HHHHHHHHhcc-----CCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehhc----cCcccccc---c---
Confidence 99999999752 7899999999999999999 88899999999999999999864 21111221 1
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH----hhc----------------c-cCCChHHHHHHHHhhC
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK----LTR----------------F-CSISAPTQRLLISMLS 219 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~----~~~----------------~-~~~~~~~~~~~~~~l~ 219 (334)
.+.++++.|++|+++.+ .++||++. ++++++.+.. ... . .+.+...+.++..+++
T Consensus 175 --~~~d~~~~s~~K~l~~p-~g~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~ 250 (356)
T cd06451 175 --WGVDVAYTGSQKALGAP-PGLGPIAF-SERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALD 250 (356)
T ss_pred --cCccEEEecCchhccCC-CCcceeEE-CHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHH
Confidence 34456677899999743 46899998 6777776653 000 0 1223333445545543
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
.. ....+.+..++..++++++.+.|++.|+++..+. .+.++|+.++... +..++++.|.+++||.+.+|
T Consensus 251 ~l--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~~gI~~~~g 322 (356)
T cd06451 251 LI--LEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGV------DGDEVVRRLMKRYNIEIAGG 322 (356)
T ss_pred HH--HHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCC------CHHHHHHHHHHhCCEEEecc
Confidence 21 1233466777888899999999998888775432 3455667776432 34678888655449999988
Q ss_pred CCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 297 SACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
..+. .++++|++++. .+++|++++++.|+++++
T Consensus 323 ~~~~--~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 323 LGPT--AGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred cccc--cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 7532 35699999985 589999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=205.38 Aligned_cols=304 Identities=20% Similarity=0.315 Sum_probs=225.3
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC---CC--CeEEec-CCCCCChhhhhhhccCcEEEEEe----
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD---HG--NALLVP-SPYYPGFDRDIRFRTGVELIPVH---- 70 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~---~g--d~vl~~-~p~~~~~~~~~~~~~g~~v~~v~---- 70 (334)
+++.++++++ |...+.+|.+|+|++.+.+.++-.+.. .| .+|++| .|.|-+|.++.. .-.. .+.+.
T Consensus 83 la~~l~~~yg--wnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l-~~d~-fVs~kP~ie 158 (417)
T COG3977 83 LAKMLRREYG--WNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGL-EEDL-FVSAKPNIE 158 (417)
T ss_pred HHHHHHHHhC--CCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccccccc-Cccc-eeeccCCcc
Confidence 4678899998 888999999999999999988877742 23 367777 799999987644 2111 11111
Q ss_pred CCCC--CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCC
Q 019899 71 CRST--DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEE 148 (334)
Q Consensus 71 ~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~ 148 (334)
..+. -.+++|.+.+.-- ..+.+|+++-|.||||.+++.+|+.++-.++++||+++++|.+|+. -|++-.
T Consensus 159 l~~~g~FKY~vDF~~l~i~--------e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~-PFP~ii 229 (417)
T COG3977 159 LLPAGQFKYHVDFEHLHIG--------ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGV-PFPGII 229 (417)
T ss_pred cccccceeeccCHHHcccc--------cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCC-CCCcee
Confidence 1112 2245676666531 3788999999999999999999999999999999999999999974 122222
Q ss_pred cchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHH
Q 019899 149 FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
+..+..+. ..+++.|.|+|| +|+||.|+|.+++ ++++++.+..++... .++...++.++.+++.++...-
T Consensus 230 fsd~~~~w------~~NiilC~SLSK-~GLPG~R~GIiIa-ne~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rl 301 (417)
T COG3977 230 FSDATPLW------NENIILCMSLSK-LGLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRL 301 (417)
T ss_pred cccccccC------CCCEEEEeehhh-cCCCCcceeEEEc-cHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHH
Confidence 33333333 578899999999 7899999999999 999999999887664 4566788888999988764221
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 227 YL----ETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 227 ~~----~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
.- .-.+++.+...+.++..|.+..+.+-.|++..|+|+=+..... ...++.++ |+..|+.+.||++|-+.
T Consensus 302 seqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPI-----tt~~LYq~-LKa~Gvl~VPG~~FFpG 375 (417)
T COG3977 302 SEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPI-----TTEELYQR-LKARGVLMVPGHYFFPG 375 (417)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCC-----CHHHHHHH-HHhCeEEEecccccCCC
Confidence 11 2234444444555555555556777899999999876655322 23688899 66689999999998553
Q ss_pred C-------CCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 303 E-------PGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 303 ~-------~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
- ..++|+++. -+++.++..+.+|.+.+++
T Consensus 376 l~~ewpH~hqC~Rmn~~-~~~~~ie~Gva~lae~ve~ 411 (417)
T COG3977 376 LDKEWPHTHQCMRMNYV-PEPEKIEKGVAILAEEVER 411 (417)
T ss_pred CCCCCCCccceEEEecC-CCHHHHHHHHHHHHHHHHH
Confidence 2 357999987 7889999999999998876
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=223.55 Aligned_cols=297 Identities=14% Similarity=0.154 Sum_probs=207.4
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
-+++.+++.+++ +++++++|+++++..++.+++++||+|+++.++|.+....++ ..|.+++.++.+.+.++.+|+++
T Consensus 48 ~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~ 124 (361)
T cd06452 48 DFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAE-RAGLNVREVPNTGHPEYHITPEG 124 (361)
T ss_pred HHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHH-hcCCEEEEEecCCCCCcccCHHH
Confidence 345556666665 789999999999999999999999999999999988877777 89999999998544456899999
Q ss_pred HHHHHHHHHHc-CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKR-GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~-~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++..+. +.+++++++++|+||||...+ +++|.++|+++|+++|+|++|+.... ..+...
T Consensus 125 l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~----~~~~~~-------- 189 (361)
T cd06452 125 YAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AKKIAKVCHEYGVPLLLNGAYTVGRM----PVSGKE-------- 189 (361)
T ss_pred HHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HHHHHHHHHHcCCeEEEECCcccCCc----CCCHHH--------
Confidence 99999753221 236889999999999999988 89999999999999999999974221 112211
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCCh----------HHHHHHHHhhCChHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISA----------PTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.+.++++.|+||+++ ++.|+||+++ ++++.+.+.+...+++.+. ....++...+. ...+++.+..
T Consensus 190 ~~~d~~~~s~~K~l~-~~~~~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~~~~~ 264 (361)
T cd06452 190 LGADFIVGSGHKSMA-ASAPIGVLAT-TEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFP---HVKERVKRWD 264 (361)
T ss_pred cCCCEEEecCCcccc-CCCCeEEEEE-CHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHH---HHHHHHHHHH
Confidence 456789999999998 5569999998 7888888866544332211 11222222221 1223333333
Q ss_pred HHHHHHHHHHHHHHHhC-CCcccC--CCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 233 RRIKKLYDSFVAGLKQL-GIRCSE--SSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~-g~~~~~--~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
+..++++++.+.|+++ |+++.. +....++.++.+..... .....+.++.+.|++ +||.+.. ...+.++
T Consensus 265 -~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~~-----~~~~~~~ 337 (361)
T cd06452 265 -EEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGIK-----PGLTRYF 337 (361)
T ss_pred -HHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHH-cCceEEc-----CCCceEE
Confidence 3344568899999998 888752 22233444565521110 001123468888554 7998532 1124589
Q ss_pred EEEecCCCcccHHHHHHHHHHHH
Q 019899 308 RCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 308 Ri~~~~~~~~~l~~~l~~l~~~~ 330 (334)
|++....++++++.+++.|+++.
T Consensus 338 ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 338 KLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EEEecCCCHHHHHHHHHHHHHHh
Confidence 99984369999999999998765
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=228.90 Aligned_cols=291 Identities=19% Similarity=0.247 Sum_probs=211.6
Q ss_pred hhhhhhcCCCCCC-CCcEEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCC
Q 019899 4 FMSQVLGQAVSFD-PSQIVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRST 74 (334)
Q Consensus 4 ~~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~ 74 (334)
.+++.+++.++++ +++|++++|+++++++++.++ .++||+|+++++.|++... ..+ ..|.+++.++++
T Consensus 66 ~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~~g~~~~~v~~~-- 142 (403)
T TIGR01979 66 AVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAE-RTGATLKFIPLD-- 142 (403)
T ss_pred HHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHH-hcCcEEEEEecC--
Confidence 3445566667777 679999999999999998875 5789999999999887543 334 579999999974
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
.++.+|++++++++++ +++++++++|+||||.++| +++|.++|+++|+++++|++|+... ...++..
T Consensus 143 ~~~~~~~~~l~~~i~~------~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~----~~~~~~~ 209 (403)
T TIGR01979 143 DDGTLDLDDLEKLLTE------KTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPH----MPVDVQA 209 (403)
T ss_pred CCCCCCHHHHHHHhcc------CCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCc----cccCccc
Confidence 4457899999999976 7999999999999999999 8899999999999999999987522 1122211
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc-----------------------ccCCChHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR-----------------------FCSISAPTQ 211 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 211 (334)
.+.++++.|++|.+|++| +|++++ ++++.+.+..... .++.+....
T Consensus 210 --------~~~d~~~~s~~K~~gp~G--~g~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 278 (403)
T TIGR01979 210 --------LDCDFYVFSGHKMYGPTG--IGVLYG-KEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGV 278 (403)
T ss_pred --------cCCCEEEEecccccCCCC--ceEEEE-chHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHH
Confidence 456788899999888666 889988 6666665431100 012333444
Q ss_pred HHHHHhhCChHHHHH-HHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC-----ceeEEeeecCCcCCCCChhhHHHHHHH
Q 019899 212 RLLISMLSDTKFIQE-YLETNKRRIKKLYDSFVAGLKQL-GIRCSESS-----AGLYCWADMSGLIPSYSEKGELELWDK 284 (334)
Q Consensus 212 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (334)
.++..+++. +.+ ..++..++..+.++++.+.|+++ ++++..+. ++++. +.++.. +..++.+.
T Consensus 279 ~al~~al~~---~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~-~~~~~~-------~~~~~~~~ 347 (403)
T TIGR01979 279 IGLGAAIDY---LEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIIS-FNVEGV-------HPHDVGTI 347 (403)
T ss_pred HHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEE-EEeCCc-------CHHHHHHH
Confidence 555554432 122 24566778888889999999887 78776543 34443 556542 23466655
Q ss_pred HHHhcCeEEcCCCCcCC------CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 285 LLNIAKINVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 285 ll~~~gi~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++++||.+.+|..|.. ..++++|+|++. .+++|++++++.|+++++.+
T Consensus 348 -L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 348 -LDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred -HhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 6779999998764321 125789999995 58999999999999988764
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=228.09 Aligned_cols=290 Identities=16% Similarity=0.189 Sum_probs=211.4
Q ss_pred hhhhhhcCCCCC-CCCcEEEecCcHHHHHHHHHH----hcCCCCeEEecCCCCCChh----hhhhhccCcEEEEEeCCCC
Q 019899 4 FMSQVLGQAVSF-DPSQIVLTAGATPAVEILCFC----LADHGNALLVPSPYYPGFD----RDIRFRTGVELIPVHCRST 74 (334)
Q Consensus 4 ~~~~~~~~~~~~-~~~~i~~~~g~~~~~~~~~~~----l~~~gd~vl~~~p~~~~~~----~~~~~~~g~~v~~v~~~~~ 74 (334)
.+++.+++.++. ++++|++|+|+|++++.++.+ ++++||+|+++++.|++.. ..++ ..|.+++.++++
T Consensus 71 ~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~-~~g~~v~~v~~~-- 147 (406)
T PRK09295 71 NVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCA-RVGAELRVIPLN-- 147 (406)
T ss_pred HHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHH-HcCcEEEEEecC--
Confidence 345566666776 578999999999999999886 4578999999999987643 3334 579999999984
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
.++.+|++++++++++ +++++++++|+||||.++| +++|.++|+++|+++++|++|+... ...++..
T Consensus 148 ~~~~~d~~~l~~~i~~------~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~----~~~~~~~ 214 (406)
T PRK09295 148 PDGTLQLETLPALFDE------RTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMH----HPVDVQA 214 (406)
T ss_pred CCCCCCHHHHHHhcCC------CcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCc----cccCchh
Confidence 3456899999999875 7899999999999999999 8889999999999999999987532 2222221
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh------------------------cccCCChHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT------------------------RFCSISAPT 210 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~------------------------~~~~~~~~~ 210 (334)
.+.++++.|++|.+|++| +|+++. ++++++.+.... ..++.+...
T Consensus 215 --------~~~D~~~~s~~K~~gp~G--~G~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~ 283 (406)
T PRK09295 215 --------LDCDFYVFSGHKLYGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGG 283 (406)
T ss_pred --------cCCCEEEeehhhccCCCC--cEEEEE-chHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHH
Confidence 456788899999888666 799998 666655442110 112345555
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC--ceeEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 211 QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESS--AGLYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
..++..+++... +..+++..++.++..+++.+.|.+. ++++..+. .+++ .+.+++. +..++... |+
T Consensus 284 ~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv-~~~~~~~-------~~~~~~~~-L~ 352 (406)
T PRK09295 284 IIGLGAALDYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVI-AFNLGKH-------HAYDVGSF-LD 352 (406)
T ss_pred HHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEE-EEEECCc-------CHHHHHHH-HH
Confidence 555665553321 1124566677888889999999877 67766543 4443 3455542 23466665 67
Q ss_pred hcCeEEcCCCCcCCC------CCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 288 IAKINVTPGSACHCI------EPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 288 ~~gi~v~~g~~~~~~------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
++||.+++|..|... .++++|+|++. .|++|++++++.|+++..
T Consensus 353 ~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 353 NYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred hCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 799999998866421 24689999996 588999999999998754
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=225.70 Aligned_cols=296 Identities=17% Similarity=0.137 Sum_probs=210.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.++..++. +++++++|+++|+..++.+++++||.|++++|.|+++...++ ..+.+.+.++ .+|++++
T Consensus 88 le~~ia~~~g~--~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~-~~~~~~~~~~-------~~d~~~l 157 (393)
T TIGR01822 88 LEAKIAAFLGT--EDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVR-LCKAKRYRYA-------NNDMADL 157 (393)
T ss_pred HHHHHHHHhCC--CcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHH-hcCCceEEeC-------CCCHHHH
Confidence 44455555543 578888999999999999999999999999999999998887 7777665543 3789999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++++....+.++++|++.+++||||.+.+ +++|.++|++||+++|+|++|+...++.. ..+..+.. +...+
T Consensus 158 ~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~-~~~~~~~~---~~~~~ 230 (393)
T TIGR01822 158 EAQLKEARAAGARHRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPT-GRGSHELC---GVMGR 230 (393)
T ss_pred HHHHHhhhhcCCCceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCC-CCchHHhc---CCCCC
Confidence 9999865333346788888888999999999 99999999999999999999965433221 11111111 11235
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
.+++++|+||+++ |.|+||+++ ++++.+.++..... ++ .++..+.++..+++ .++ ..++.+++++++++
T Consensus 231 ~di~~~s~sK~l~--g~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~---~~~-~~~~~~~~~~~~~~ 303 (393)
T TIGR01822 231 VDIITGTLGKALG--GASGGFTTA-RKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLE---MLE-ASNELRDRLWANTR 303 (393)
T ss_pred CeEEEEEChHHhh--CCCcEEEEe-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHH---HHh-cCHHHHHHHHHHHH
Confidence 6788999999874 578999998 78888888764322 22 23333334444432 111 23567788999999
Q ss_pred HHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC--CCCCeEEEEecC-CCcc
Q 019899 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC--IEPGWFRCCFTS-LTHE 317 (334)
Q Consensus 241 ~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~~iRi~~~~-~~~~ 317 (334)
++.+.|++.|+++..+.++ ++.+.++.. .++.++...|++ +||.+. +..|.. ....++|++++. .+++
T Consensus 304 ~l~~~L~~~g~~~~~~~~~-~~~i~~~~~------~~~~~l~~~L~~-~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~e 374 (393)
T TIGR01822 304 YFRERMEAAGFDIKPADHP-IIPVMLYDA------VLAQRFARRLLE-EGIYVT-GFFYPVVPKGQARIRVQISAAHTEE 374 (393)
T ss_pred HHHHHHHHcCCCCCCCCCC-EEEEEeCCH------HHHHHHHHHHHH-CCeeEe-eeCCCCCCCCCceEEEEECCCCCHH
Confidence 9999998888876654444 333444431 234678888665 699987 444432 123579999885 5899
Q ss_pred cHHHHHHHHHHHHHHc
Q 019899 318 DIPLVIERIQKVAETC 333 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~ 333 (334)
|+++++++|+++.++.
T Consensus 375 di~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 375 QLDRAVEAFTRIGREL 390 (393)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998754
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=230.06 Aligned_cols=294 Identities=14% Similarity=0.169 Sum_probs=212.4
Q ss_pred hhhhhhcCCCCCC-CCcEEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCC
Q 019899 4 FMSQVLGQAVSFD-PSQIVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRST 74 (334)
Q Consensus 4 ~~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~ 74 (334)
.+++.+++.++++ +++|++|+|+|++++.++..+ +++||+|+++.+.|++... ..+ ..|.+++.+++..
T Consensus 80 ~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~-~~g~~v~~v~~~~- 157 (424)
T PLN02855 80 LARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQ-KTGAVLKFVGLTP- 157 (424)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHH-HcCCEEEEEecCC-
Confidence 4456667777775 579999999999999998763 5789999999999886443 334 5799999999843
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
+..+|++++++++++ ++++|++++++||||.++| +++|.++|+++|+++++|++|+. +....++.
T Consensus 158 -~~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~----g~~~~~~~- 222 (424)
T PLN02855 158 -DEVLDVEQLKELLSE------KTKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSV----PHMPVDVQ- 222 (424)
T ss_pred -CCCcCHHHHHHHhcc------CceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhc----CCcCCCch-
Confidence 345899999999976 7899999999999999999 88999999999999999999864 22222222
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-----------------------cccCCChHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-----------------------RFCSISAPTQ 211 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 211 (334)
. .+.++++.|++|.+|++| +|+++. ++++++.+.... ..++.+....
T Consensus 223 --~-----~~~d~~~~s~~K~~gp~G--~G~l~~-~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~ 292 (424)
T PLN02855 223 --T-----LGADFLVASSHKMCGPTG--IGFLWG-KSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEA 292 (424)
T ss_pred --h-----cCCCEEEeecccccCCCc--cEEEEE-chhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHH
Confidence 1 455678999999777555 899998 667666553220 0112333444
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc------eeEEeeecCCcCCCCChhhHHHHHHH
Q 019899 212 RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSA------GLYCWADMSGLIPSYSEKGELELWDK 284 (334)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (334)
.++..+++... +..+++.+++..+..+++.+.|+++ ++++..+.. +.++.+.++.. +..++.+.
T Consensus 293 ~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-------~~~~v~~~ 363 (424)
T PLN02855 293 IGLGAAIDYLS--EIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-------HPTDLSTF 363 (424)
T ss_pred HHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-------CHHHHHHH
Confidence 44554443211 2245677788888889999999877 777664321 23444666642 23567777
Q ss_pred HHHhcCeEEcCCCCcCC------CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 285 LLNIAKINVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 285 ll~~~gi~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
|.+++||.+..|..|.. ..++++|+|++. .|++|++++++.|+++++++
T Consensus 364 L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~ 419 (424)
T PLN02855 364 LDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFF 419 (424)
T ss_pred hcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 55545999998886532 124689999986 59999999999999998764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=226.30 Aligned_cols=302 Identities=14% Similarity=0.175 Sum_probs=219.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.++ .++.|++++|.+ ++..++.+++++||.|+++...|+++...+. ..|.+++.++.+ |++.+
T Consensus 159 Lee~La~~~~-~~~~i~~s~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~-ls~~~~~~~~~n-------d~~~l 228 (481)
T PLN02822 159 CETKIAKFLG-TPDSILYSYGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLY-LSRSTIVYFKHN-------DMESL 228 (481)
T ss_pred HHHHHHHHhC-CCCEEEECCHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHH-HcCCeEEEECCC-------CHHHH
Confidence 3444444444 346788887766 6788999999999999999888888878887 788899988842 45666
Q ss_pred HHHHHHHHHc---CCce-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC--CCCcchhhhhhhc
Q 019899 85 DQAFNQARKR---GVKV-RGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG--NEEFVSMAEILEA 158 (334)
Q Consensus 85 ~~~l~~~~~~---~~~~-~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~--~~~~~~~~~~~~~ 158 (334)
+..+++.... .+++ ++|++..+++++|.+.| +++|.++|++||+++|+||+|+.+.++ |.+......+..
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~- 304 (481)
T PLN02822 229 RNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPI- 304 (481)
T ss_pred HHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCC-
Confidence 6666544322 1234 67777777899999999 899999999999999999999977775 333223222211
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCC--hHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSIS--APTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
...+++++||||++|++| ||+++ ++++++.++.... .++.+ +..+.++..+++. ++.. .+.+++
T Consensus 305 ----~~~dii~~s~sKalg~~G---G~i~g-~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~---l~~~-~~~~~~ 372 (481)
T PLN02822 305 ----EKIDIITAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV---LEDN-PSVLAK 372 (481)
T ss_pred ----CCCeEEEecchhhhhhCC---eEEEc-CHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHH---HHhC-HHHHHH
Confidence 355688899999999888 99998 8888888875432 34444 4555666566532 2222 467788
Q ss_pred HHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCC--cCCC-CCCeEE
Q 019899 235 IKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSA--CHCI-EPGWFR 308 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~--~~~~-~~~~iR 308 (334)
++++.+++.+.|++. |+.+..+.+++++++.+++.... .......+++++|++++||.+.|+.+ ++.. .+.++|
T Consensus 373 l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lR 452 (481)
T PLN02822 373 LKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIR 452 (481)
T ss_pred HHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEE
Confidence 999999999999986 88887777888888888653111 11122467899988779999997643 3211 135799
Q ss_pred EEecC-CCcccHHHHHHHHHHHHHH
Q 019899 309 CCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 309 i~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++++. .+++||++++++|++++.+
T Consensus 453 i~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 453 LFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99875 6999999999999998875
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=219.93 Aligned_cols=292 Identities=16% Similarity=0.148 Sum_probs=214.5
Q ss_pred hhhhhcCCCCCCCC--cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCCh--hhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPS--QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF--DRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~--~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~--~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+++.++++++ .|++|+|+|++++.++.++..+||.+++..+.+++. ...++ ..|.+++.++++ .+..+|
T Consensus 40 ~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~-~~g~~~~~v~~~--~~~~~d 116 (363)
T TIGR02326 40 IRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAE-YLGIPHHVVDTG--EVEPPD 116 (363)
T ss_pred HHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHH-HcCCceEEEeCC--CCCCCC
Confidence 45556666777654 699999999999999999988888877766655544 34456 789999999973 456789
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++. .+++++.+++++||||.++| +++|.++|+++|+++++|++++. |....++..
T Consensus 117 ~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~~----g~~~~~~~~------ 179 (363)
T TIGR02326 117 VVEVEAILAAD----PAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSSF----GGIPIDIAE------ 179 (363)
T ss_pred HHHHHHHHhhC----CCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEccccc----cCcccchhh------
Confidence 99999998752 24677889999999999999 89999999999999999998763 222223322
Q ss_pred cCCCcEEEEecccccC-CCCCceEEEEeecCHHHHHHHHHh--------------------hcccCCChHHHHHHHHhhC
Q 019899 161 VDKDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKKL--------------------TRFCSISAPTQRLLISMLS 219 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~ 219 (334)
.+.+++++|++|++ |++| +|++++ +++..+.+... ...++.+.+.+.++.++++
T Consensus 180 --~~~D~~~~s~~K~l~~p~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~ 254 (363)
T TIGR02326 180 --LHIDYLISSANKCIQGVPG--FGFVIA-RQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALL 254 (363)
T ss_pred --cCccEEEecCccccccCCc--ceEEEE-CHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHH
Confidence 45568889999988 4445 799998 66666654311 0124566677777766664
Q ss_pred ChHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 220 DTKFIQE-YLETNKRRIKKLYDSFVAGLKQLGIRCSES---SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 220 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
... ++ .+++..++++++++++.+.|+++|++...+ ..+...++.+|.... .+..++.+. ++++||.+.|
T Consensus 255 ~l~--~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~-L~~~gi~v~~ 327 (363)
T TIGR02326 255 ELE--KEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPD----YRFADFYQR-LKEQGFVIYP 327 (363)
T ss_pred HHH--HhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCC----CCHHHHHHH-HHHCCEEEEC
Confidence 421 22 246678899999999999999988876543 345567778775311 123466777 5668999999
Q ss_pred CCCcCCCCCCeEEEEe-cCCCcccHHHHHHHHHHHHH
Q 019899 296 GSACHCIEPGWFRCCF-TSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~-~~~~~~~l~~~l~~l~~~~~ 331 (334)
|..+. .+++|+++ +..+.++++.+++.|++++.
T Consensus 328 g~~~~---~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 328 GKVSQ---VDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred CcCCC---CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 87652 47899996 44699999999999998763
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=229.73 Aligned_cols=292 Identities=14% Similarity=0.183 Sum_probs=213.8
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----CCCCeEEecCCCCCChhhh---hhhccCcEEEEEeCCCCC
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----DHGNALLVPSPYYPGFDRD---IRFRTGVELIPVHCRSTD 75 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----~~gd~vl~~~p~~~~~~~~---~~~~~g~~v~~v~~~~~~ 75 (334)
+.+++.+++.+++++++|++++|+++++..++.++. ++||+|+++...|+++... ++ ..|.+++.++++ .
T Consensus 46 ~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~-~~g~~v~~v~~~--~ 122 (381)
T PRK02948 46 QVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLE-SQGYTVTEIPVD--K 122 (381)
T ss_pred HHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHH-hCCCEEEEEeeC--C
Confidence 345666777778889999999999999999888875 5789999999888776554 44 579999999974 4
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
++.+|++++++++++ +++++++++|+||||.+.| +++|.++|+++|+++++|+++... .....+.
T Consensus 123 ~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~~g----~~~~~~~-- 187 (381)
T PRK02948 123 SGLIRLVDLERAITP------DTVLASIQHANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQTFG----KLPIDVF-- 187 (381)
T ss_pred CCCCCHHHHHHhcCC------CCEEEEEECCcCCcEeehh---HHHHHHHHHHcCCEEEEEChhhcc----ccccCcc--
Confidence 467999999999875 7889999999999999999 888999999999999999876531 1111211
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHH-HHHHHH------hhcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV-LAAAKK------LTRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
. .+.++++.|++|.+|++| +|+++. ++++ ...... ....++.+.+.+.++..++... .++.
T Consensus 188 -~-----~~~d~~~~s~~K~~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~---~~~~ 255 (381)
T PRK02948 188 -E-----MGIDSLSVSAHKIYGPKG--VGAVYI-NPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI---LKNM 255 (381)
T ss_pred -c-----CCCCEEEecHHhcCCCCc--EEEEEE-cCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH---HHHH
Confidence 1 567788899999988777 788887 4443 111110 0134567778888888777542 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCC-cee----EEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLGIRCSESS-AGL----YCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI- 302 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~g~----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~- 302 (334)
.+.++++.+.++++.+.|+++++++.... ..+ .+.+.++.. +..++... ++++||.+++|..|...
T Consensus 256 ~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~-l~~~gI~v~~g~~c~~~~ 327 (381)
T PRK02948 256 QEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGI-------EGQYTMLE-CNRRGIAISTGSACQVGK 327 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCC-------CHHHHHHh-cccCCEEEEchHhcCCCC
Confidence 77788999999999999999887654221 111 111222221 23466666 56689999988864321
Q ss_pred ----------------CCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 303 ----------------EPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 303 ----------------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
..+++|+|++. .|++|++++++.|++++++
T Consensus 328 ~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 374 (381)
T PRK02948 328 QEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQ 374 (381)
T ss_pred CCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 14689999996 5999999999999998865
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=223.80 Aligned_cols=292 Identities=13% Similarity=0.093 Sum_probs=204.6
Q ss_pred hcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh-----hhhccCcEEEEEeCCCC-CCccccHH
Q 019899 9 LGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD-----IRFRTGVELIPVHCRST-DNFAFSIT 82 (334)
Q Consensus 9 ~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~-----~~~~~g~~v~~v~~~~~-~~~~~~~~ 82 (334)
+++.++++...|+++ ++++|+..++.+++++||+|++++|+|+++... ++ ..|.++..+++..+ +++.+|++
T Consensus 74 ~~~~~g~~~~~v~~~-sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~id~~ 151 (402)
T cd00378 74 AKKLFGAEYANVQPH-SGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVS-ASGKLFESVPYGVDPETGLIDYD 151 (402)
T ss_pred HHHHhCCCceeeecC-CcHHHHHHHHHHhcCCCCEEEEecCccCcccccccccccc-ccceeEEEecCCcCcccCCcCHH
Confidence 334455665556555 567999999999999999999999999877554 44 57877777776433 26789999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccc-cccccCCCCcchhhhhhhcccc
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIY-GGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
++++++++. +++++++++|+|| ...+ +++|.++|+++|+++++|++| .++.+.+.....+.
T Consensus 152 ~l~~~i~~~-----~~~~v~~~~~~~~--~~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-------- 213 (402)
T cd00378 152 ALEKMALEF-----KPKLIVAGASAYP--RPID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-------- 213 (402)
T ss_pred HHHHHHHhC-----CCCEEEecCcccC--CCcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--------
Confidence 999999752 7888888888775 4556 899999999999999999996 33333332111111
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc--CCCh-HHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--SISA-PTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
+.+++++|+||++ +|.|.||++++++++.+.+......+ +.+. ....++..++.. .......+.++++.++
T Consensus 214 --~~dv~~~s~sK~l--~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~ 287 (402)
T cd00378 214 --GADVVTTTTHKTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKE--ALEPEFKAYAKQVVEN 287 (402)
T ss_pred --CCcEEEeccccCC--CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 2236789999987 77889999996658888887654332 2222 222232333321 1122446677889999
Q ss_pred HHHHHHHHHhCCCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC----CCCCCeEEEEecC
Q 019899 239 YDSFVAGLKQLGIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH----CIEPGWFRCCFTS 313 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----~~~~~~iRi~~~~ 313 (334)
++++.+.|++.|+.+. .+.+++++|+++++... +...+. .+++++||.+.++...+ ...+.++|+++..
T Consensus 288 ~~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~~-----~~~~~~-~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~ 361 (402)
T cd00378 288 AKALAEALKERGFKVVSGGTDNHLVLVDLRPKGI-----TGKAAE-DALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPA 361 (402)
T ss_pred HHHHHHHHHhCCCeEeecCCCCeEEEEeCCccCC-----CHHHHH-HHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHH
Confidence 9999999999898875 45678999999974321 123344 45778999998643211 1134689999864
Q ss_pred -----CCcccHHHHHHHHHHHHHH
Q 019899 314 -----LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 -----~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++|++.+++.|+++++.
T Consensus 362 ~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 362 MTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhc
Confidence 2589999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-29 Score=221.44 Aligned_cols=287 Identities=16% Similarity=0.168 Sum_probs=206.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.++..++ .++++++++| ++++..++.+++++||+|+++.|+|+.+...++ ..|.+++.++. +|++.+
T Consensus 66 l~~~la~~~~-~~~~i~~~~G-~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~-~~g~~~~~~~~-------~d~~~l 135 (360)
T TIGR00858 66 LEEELAEWKG-TEAALLFSSG-YLANVGVISALVGKGDLILSDALNHASLIDGCR-LSGARVRRYRH-------NDVEHL 135 (360)
T ss_pred HHHHHHHHhC-CCCEEEECch-HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHH-hcCCceEEecC-------CCHHHH
Confidence 4444544444 3456777776 455556778888999999999999999999888 88998888773 578999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCC--cchhhhhhhccccC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEE--FVSMAEILEAEEVD 162 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~--~~~~~~~~~~~~~~ 162 (334)
++.+++.. +.+++++++.+++||+|...+ +++|.++|+++|+++|+||+|+.+.++... ......+.+
T Consensus 136 ~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~----- 205 (360)
T TIGR00858 136 ERLLEKNR--GERRKLIVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKP----- 205 (360)
T ss_pred HHHHHHcc--cCCCeEEEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCc-----
Confidence 99887520 024677888888999999999 899999999999999999999876654321 122222222
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--c--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--C--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+++++++|+||+++++| ||+++ ++++.+.+...... + +.++..+.++..+++.. . ...++++++.++
T Consensus 206 ~~~~i~i~s~sK~~~~~g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~-~~~~~~~~~~~~ 277 (360)
T TIGR00858 206 EPVDIQVGTLSKALGSYG---AYVAG-SQALIDYLINRARTLIFSTALPPAVAAAALAALELI---Q-EEPWRREKLLAL 277 (360)
T ss_pred cCCcEEEEechhhhhccC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH---h-hCHHHHHHHHHH
Confidence 467899999999998766 89997 78888877643322 1 23344444444444321 2 224567889999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-CCCCeEEEEecC-CCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC-IEPGWFRCCFTS-LTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~~iRi~~~~-~~~ 316 (334)
++++.+.|+++++++..+ .+.++|+.++.. .++.++.+.|+ ++||.+.++..++. ...+++|++++. .++
T Consensus 278 ~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~ 349 (360)
T TIGR00858 278 IARLRAGLEALGFTLMPS-CTPIVPVIIGDN------ASALALAEELQ-QQGIFVGAIRPPTVPAGTSRLRLTLSAAHTP 349 (360)
T ss_pred HHHHHHHHHHcCCccCCC-CCCEEEEEeCCH------HHHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEEEEcCCCCH
Confidence 999999999888776544 566788887642 23467888865 57999998765532 234689999985 599
Q ss_pred ccHHHHHHHHH
Q 019899 317 EDIPLVIERIQ 327 (334)
Q Consensus 317 ~~l~~~l~~l~ 327 (334)
+++++++++|+
T Consensus 350 ~~i~~~l~~l~ 360 (360)
T TIGR00858 350 GDIDRLAEALK 360 (360)
T ss_pred HHHHHHHHhhC
Confidence 99999998763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=222.52 Aligned_cols=284 Identities=18% Similarity=0.158 Sum_probs=202.4
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCc
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVK 97 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 97 (334)
++|++|+| ++++..++.+++++||.|++++|+|+++...+. ..|.+++.++. .|++++++.+++....+.+
T Consensus 104 ~~i~~tsG-~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~-~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~ 174 (397)
T PRK06939 104 DAILYSSC-FDANGGLFETLLGKEDAIISDALNHASIIDGVR-LCKAKRYRYAN-------NDMADLEAQLKEAKEAGAR 174 (397)
T ss_pred cEEEEcCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHH-hcCCceEEeCC-------CCHHHHHHHHHhhhccCCC
Confidence 67777777 778999999999999999999999999998888 88888887763 4789999888754333346
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCC
Q 019899 98 VRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLS 177 (334)
Q Consensus 98 ~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~ 177 (334)
+++++..+..|++|...+ +++|.++|++++++||+||+|+...+........ ... ++..+.+++++|+||+++
T Consensus 175 ~~~v~~~~v~~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~-~~~---~~~~~~~i~~~S~sK~~~ 247 (397)
T PRK06939 175 HKLIATDGVFSMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENGRGTV-EHF---GVMDRVDIITGTLGKALG 247 (397)
T ss_pred CeEEEEecCcCCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCCHH-HHc---CCCCCCcEEEEECHHHhC
Confidence 776776666899999877 9999999999999999999996432221111111 111 122356789999999994
Q ss_pred CCCceEEEEeecCHHHHHHHHHhhcc--cC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 019899 178 LPGFRTGVIYSYNESVLAAAKKLTRF--CS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRC 253 (334)
Q Consensus 178 ~~g~r~g~i~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 253 (334)
|.|+||+++ ++++++.+...... ++ .++..+.++..+++. +. ...+++++++++++++.+.|++.+++.
T Consensus 248 --g~r~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~---~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~ 320 (397)
T PRK06939 248 --GASGGYTAG-RKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLEL---LE-ESDELRDRLWENARYFREGMTAAGFTL 320 (397)
T ss_pred --ccCceEEEe-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHH---Hh-cCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 458999998 78888888754322 22 223333333333322 12 124667888999999999999888877
Q ss_pred cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC--CCCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 254 SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC--IEPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 254 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
..+.++++. +.++.. .++.++++.|++ +||.+.++. |+. ...+++|++++. .+++++++++++|++++
T Consensus 321 ~~~~~~~~~-~~~~~~------~~~~~~~~~L~~-~gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~ 391 (397)
T PRK06939 321 GPGEHPIIP-VMLGDA------KLAQEFADRLLE-EGVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVG 391 (397)
T ss_pred CCCCCCEEE-EEECCH------HHHHHHHHHHHH-CCceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 666666543 334321 234678888666 599988654 322 224689999875 68999999999999998
Q ss_pred HHc
Q 019899 331 ETC 333 (334)
Q Consensus 331 ~~~ 333 (334)
++.
T Consensus 392 ~~~ 394 (397)
T PRK06939 392 KEL 394 (397)
T ss_pred HHh
Confidence 764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=225.86 Aligned_cols=299 Identities=14% Similarity=0.156 Sum_probs=209.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.++ .++.|++++ ++.++..++.+++++||.|++++|+|.++...++ ..|.+++.++. .|++++
T Consensus 151 le~~lA~~~g-~~~ai~~~~-G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~-~~Ga~v~~~~~-------~d~~~l 220 (489)
T PLN02483 151 LEELVARFVG-KPAAIVFGM-GYATNSTIIPALIGKGGLIISDSLNHNSIVNGAR-GSGATIRVFQH-------NTPSHL 220 (489)
T ss_pred HHHHHHHHhC-CCcEEEECC-HHHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHH-HcCCeEEEEeC-------CCHHHH
Confidence 4445555555 344566655 5566778888899999999999999999999998 89999999984 256778
Q ss_pred HHHHHHHHHc-CCc-----eeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC--CCCcchhhhh
Q 019899 85 DQAFNQARKR-GVK-----VRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG--NEEFVSMAEI 155 (334)
Q Consensus 85 ~~~l~~~~~~-~~~-----~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~--~~~~~~~~~~ 155 (334)
++.+++.... +.+ .++++++.+ .|++|.+.+ +++|+++|++||+++|+||+|+...++ |....++..+
T Consensus 221 e~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v 297 (489)
T PLN02483 221 EEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGV 297 (489)
T ss_pred HHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCC
Confidence 7777653211 112 255666666 689999998 999999999999999999999854432 2222333333
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--c--CCChHHHHHHHHhhCC---hHHHHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--C--SISAPTQRLLISMLSD---TKFIQEYL 228 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~---~~~~~~~~ 228 (334)
.+ .+.+++++|+||++|+.| ||+++ ++++++.++..... + ..++....++.+.++. .+ ..+..
T Consensus 298 ~~-----~~~dI~~~SfSKs~g~~G---G~i~~-~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~-g~~~~ 367 (489)
T PLN02483 298 DP-----ADVDIMMGTFTKSFGSCG---GYIAG-SKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGED-GTNRG 367 (489)
T ss_pred Cc-----ccCcEEEEecchhcccCc---eEEEc-CHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCc-cccch
Confidence 22 467899999999998776 99997 88999998865321 2 2333333333333321 10 01223
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC-CCCCCeE
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH-CIEPGWF 307 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~~~~~~i 307 (334)
.+++++++++++++.+.|+++|+.+..+.++..+|+.+... .+..++.+.|++ +||.+.|..+.. +...+++
T Consensus 368 ~~~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~l~l~~~------~~~~~~~~~Ll~-~GI~v~~~~fp~~p~~~~~v 440 (489)
T PLN02483 368 AQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNP------AKIPAFSRECLK-QNVAVVVVGFPATPLLLARA 440 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEEEEECCH------HHHHHHHHHHHH-CCcEEeeeCCCCCCCCCceE
Confidence 45567899999999999999998877666666666655432 123578888766 799998733322 2234789
Q ss_pred EEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 308 RCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 308 Ri~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
|++++. .+++++++++++|.++++..
T Consensus 441 Ri~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 441 RICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999985 69999999999999987654
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=218.06 Aligned_cols=293 Identities=16% Similarity=0.146 Sum_probs=210.7
Q ss_pred hhhhhhcCCCCCCCC--cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCC-CC-hhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 4 FMSQVLGQAVSFDPS--QIVLTAGATPAVEILCFCLADHGNALLVPSPYY-PG-FDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~--~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~-~~-~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
.+++.+++.++++++ .|++++|+++++..++.+++.++|++++..+.+ +. +...++ ..|.+++.++.+ +++.+
T Consensus 35 ~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~-~~g~~~~~i~~~--~~~~~ 111 (355)
T TIGR03301 35 QVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICE-YLGIPHTDLNFS--EYEPP 111 (355)
T ss_pred HHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHH-HcCCceEEEecC--CCCCC
Confidence 345555566666665 578899999999999999988888877665554 43 334455 789999999873 45688
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++. .+++++++++++||||...| +++|+++|+++++++|+|++++... ...++. .
T Consensus 112 d~~~l~~~l~~~----~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s~g~----~~~~~~---~-- 175 (355)
T TIGR03301 112 DLNRIEEALAAD----PDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSSFGA----IPIDIE---E-- 175 (355)
T ss_pred CHHHHHHHHHhC----CCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEeccccCC----cccchh---h--
Confidence 999999999752 25677888999999999999 8999999999999999999876421 112222 1
Q ss_pred ccCCCcEEEEecccccC-CCCCceEEEEeecCHHHHHHHHHh-------------------hcccCCChHHHHHHHHhhC
Q 019899 160 EVDKDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKKL-------------------TRFCSISAPTQRLLISMLS 219 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~ 219 (334)
.+.++++.|++|++ |++| +||+++ ++++++.+... ...++.+...+.++..+++
T Consensus 176 ---~~~d~~~~s~~K~l~~~~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~ 249 (355)
T TIGR03301 176 ---LDVDALIASANKCLEGVPG--FGFVIA-RRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALE 249 (355)
T ss_pred ---cCccEEEecCCcccccCCc--eeEEEE-CHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHH
Confidence 45678889999987 4455 699998 77877776521 0123456666666666664
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSES---SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
.... +..+.+..++++++++++.+.|+++|+++..+ .+++++|+.+|.... .+..++.+. ++++||.+.+|
T Consensus 250 ~~~~-~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-l~~~gi~i~~~ 323 (355)
T TIGR03301 250 ELEA-EGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPD----FDFDDFYQE-LKERGFVIYPG 323 (355)
T ss_pred HHHH-cccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCc----chHHHHHHH-HHHCCEEEECC
Confidence 3210 11246677788899999999999888875433 345667888875211 123467777 55689999998
Q ss_pred CCcCCCCCCeEEEEec-CCCcccHHHHHHHHHHHH
Q 019899 297 SACHCIEPGWFRCCFT-SLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~-~~~~~~l~~~l~~l~~~~ 330 (334)
..+. .+++|+++. ..++++++++++.|++++
T Consensus 324 ~~~~---~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 324 KLTL---ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred cccc---ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 6543 278999985 469999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=218.12 Aligned_cols=292 Identities=19% Similarity=0.199 Sum_probs=207.3
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.++. ++.++++++++++.+++.+++++||+|+++.|.|+++...++ ..|.++++++. +|.+.+
T Consensus 51 l~~~la~~~~~--~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~-------~~~~~l 120 (349)
T cd06454 51 LEEELAEFHGK--EAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIR-LSGAKKRIFKH-------NDMEDL 120 (349)
T ss_pred HHHHHHHHhCC--CCEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHH-HcCCceEEecC-------CCHHHH
Confidence 44445444544 345666677789888888889999999999999999988888 88999888762 477888
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++.+++.. +..+++++++++++||||...+ +++|+++|+++|+++|+|++|+...++... ........ ...+
T Consensus 121 e~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~-~~~~~~~~---~~~~ 192 (349)
T cd06454 121 EKLLREAR-RPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHG-RGVEEFGG---LTDD 192 (349)
T ss_pred HHHHHHhh-ccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCC-CChhhhcc---cccc
Confidence 88887532 1235788888899999999988 899999999999999999999754332111 11111110 1156
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
.+++++|+||.++++| ||++. ++++.+.+...... .+.++..+.++...++.. .+ ....++++.++++
T Consensus 193 ~~i~~~s~sK~~~~~g---G~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~~~~ 264 (349)
T cd06454 193 VDIIMGTLGKAFGAVG---GYIAG-SKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL---QG-GPERRERLQENVR 264 (349)
T ss_pred CcEEEeechhhhcccC---CEEEC-CHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHH
Confidence 7899999999998655 88887 77887777654322 234555555555555332 22 3556788889999
Q ss_pred HHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-CCCCeEEEEecC-CCccc
Q 019899 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC-IEPGWFRCCFTS-LTHED 318 (334)
Q Consensus 241 ~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~~iRi~~~~-~~~~~ 318 (334)
.+.+.|++.|+....+.++++.++.++.. .+..++...|++ +||.+.++.+... ...+++|++++. .++++
T Consensus 265 ~l~~~l~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~-~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~ 337 (349)
T cd06454 265 YLRRGLKELGFPVGGSPSHIIPPLIGDDP------AKAVAFSDALLE-RGIYVQAIRYPTVPRGTARLRISLSAAHTKED 337 (349)
T ss_pred HHHHHHHhcCCcccCCCCCcEEEEeCCCh------HHHHHHHHHHHh-CCceEEEecCCccCCCCCeEEEEEeCCCCHHH
Confidence 99999998888876665666555544321 244678888666 5999987643211 124789999985 69999
Q ss_pred HHHHHHHHHHH
Q 019899 319 IPLVIERIQKV 329 (334)
Q Consensus 319 l~~~l~~l~~~ 329 (334)
+++++++|+++
T Consensus 338 i~~~~~~l~~~ 348 (349)
T cd06454 338 IDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=218.48 Aligned_cols=295 Identities=14% Similarity=0.095 Sum_probs=216.1
Q ss_pred hcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh--hhhhhccCcEEEEEeCCCCCCccccHHHHH
Q 019899 9 LGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD--RDIRFRTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 9 ~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
+++.++.+. +.+++++++++++..++..++++||+|+++++.|++.. ..++ ..|.+++.++.+ .+..+|+++++
T Consensus 51 l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~-~~g~~v~~v~~~--~~~~~~~~~l~ 127 (401)
T PLN02409 51 VKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQ-RLNFDVDVVESP--WGQGADLDILK 127 (401)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHH-HcCCceEEEECC--CCCCCCHHHHH
Confidence 333444554 46888889999999999999999999999999887653 4555 789999999974 33458999999
Q ss_pred HHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCc
Q 019899 86 QAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR 165 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (334)
+++++. ...+++++++++++||||.++|.+++.++++ |+++|+++++|++++. +....++.. ++.
T Consensus 128 ~~l~~~--~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s~----g~~~id~~~--------~~~ 192 (401)
T PLN02409 128 SKLRQD--TNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSSI----GALDFRMDE--------WGV 192 (401)
T ss_pred HHHhhC--cCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEccccc----CCccccccc--------cCc
Confidence 999851 0026899999999999999999444444444 9999999999999864 211122211 466
Q ss_pred EEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--------------------ccCCChHHHHHHHHhhCChHHHH
Q 019899 166 VHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--------------------FCSISAPTQRLLISMLSDTKFIQ 225 (334)
Q Consensus 166 ~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~~ 225 (334)
++++.|.+|+++.| .++|+++. +++..+.+..... .++.+...+.++..+++.. .+
T Consensus 193 D~~~~s~~K~l~~P-~G~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~--~~ 268 (401)
T PLN02409 193 DVALTGSQKALSLP-TGLGIVCA-SPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLI--FE 268 (401)
T ss_pred cEEEEcCccccCcC-CCcceeEE-CHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH--HH
Confidence 78888889999643 36999998 7777777653210 2244455566666666432 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLGIRCSESS----AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
..+++..++++++.+++.+.|+++|+++..+. .+..+++.+|...+ +.++...+++++||.+.+|...
T Consensus 269 ~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~------~~~l~~~l~~~~~i~i~~G~~~-- 340 (401)
T PLN02409 269 EGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGID------SAEIVKNAWKKYNLSLGLGLNK-- 340 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCC------HHHHHHHHHHhCCEEEEcCCCc--
Confidence 44678888999999999999998898876542 22345677775433 3578888888899999988752
Q ss_pred CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 302 IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 302 ~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.....+|++... .+++++..++++|.+++.+.
T Consensus 341 ~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 341 VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 246789999764 69999999999999998764
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=214.46 Aligned_cols=295 Identities=16% Similarity=0.163 Sum_probs=210.6
Q ss_pred hhhhhcCCCCCCC--CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh--hhhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDP--SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD--RDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~--~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+++.++.++ +.+++++++++++..++.++..+||+|+++.+.|++.. ..++ ..|.+++.++.. .++.+|
T Consensus 42 ~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~-~~g~~~~~i~~~--~~~~~d 118 (368)
T PRK13479 42 VRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAE-YLGIAHVVLDTG--EDEPPD 118 (368)
T ss_pred HHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHH-HcCCcEEEEECC--CCCCCC
Confidence 3444555556654 45889999999999999999999999999988877653 5556 789999999973 345789
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++. .+++++++++|+||||...| +++|.++|+++|+++++|++++. +....++. .
T Consensus 119 ~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~~----g~~~~~~~---~--- 181 (368)
T PRK13479 119 AAEVEAALAAD----PRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSSF----GAIPIDIA---E--- 181 (368)
T ss_pred HHHHHHHHHhC----CCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEccccc----CCcccccc---c---
Confidence 99999998752 25678999999999999999 88999999999999999976543 21122222 1
Q ss_pred cCCCcEEEEecccccC-CCCCceEEEEeecCHHHHHHHHHhhc-------------------ccCCChHHHHHHHHhhCC
Q 019899 161 VDKDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKKLTR-------------------FCSISAPTQRLLISMLSD 220 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~ 220 (334)
.+.++++.|++|++ |++| +||+++ ++++++.+..... .++.+.....++..+++.
T Consensus 182 --~~~d~~v~s~~K~l~g~~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~ 256 (368)
T PRK13479 182 --LGIDALISSANKCIEGVPG--FGFVIA-RRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLE 256 (368)
T ss_pred --cCceEEEecCccccccCCC--ceEEEE-CHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHH
Confidence 34557788999987 5566 699998 7777777654211 134555555565555543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 221 TKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
... ...+.+..+++.++++++.+.|+++|+++..+. .+..+.+.++.... .+..++.+.| .++||.+.+|.
T Consensus 257 l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L-~~~gi~v~~g~ 330 (368)
T PRK13479 257 LEE-EGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPA----YDFKEFYERL-KEQGFVIYPGK 330 (368)
T ss_pred HHH-hhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCC----cCHHHHHHHH-HHCCEEEecCC
Confidence 210 123456678889999999999999998765332 22223334443211 1235777784 55799999876
Q ss_pred CcCCCCCCeEEEEe-cCCCcccHHHHHHHHHHHHHHc
Q 019899 298 ACHCIEPGWFRCCF-TSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 298 ~~~~~~~~~iRi~~-~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+ ..+++|++. +..+++|++++++.|++++++.
T Consensus 331 ~~---~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 331 LT---QVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred CC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 43 246899986 5579999999999999998765
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-28 Score=216.62 Aligned_cols=282 Identities=16% Similarity=0.163 Sum_probs=202.2
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
++.+++++| ++++..++.+++++||.|+++.|.|+++...+. ..|.+++.++ .+|++++++.+++.. ..
T Consensus 94 ~~~i~~~sG-~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~-~~g~~~~~~~-------~~d~~~l~~~l~~~~--~~ 162 (385)
T TIGR01825 94 EAALVFQSG-FNTNQGVLSALLRKGDIVLSDELNHASIIDGLR-LTKATKKIYK-------HADMDDLDRVLRENP--SY 162 (385)
T ss_pred CcEEEECcH-HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHH-hcCCceEEeC-------CCCHHHHHHHHHhhc--cC
Confidence 356777766 567778888889999999999999999988877 7788776654 468888988887531 12
Q ss_pred ceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccC
Q 019899 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDL 176 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~ 176 (334)
+++++++.+++||||.+.+ +++|.++|++||+++|+||+|+.+.++.........+ +.+.+.++++.|+||++
T Consensus 163 ~~~~v~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~s~sK~~ 235 (385)
T TIGR01825 163 GKKLIVTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHF----GLEDKVDIQVGTLSKAI 235 (385)
T ss_pred CCeEEEEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhc----CCCcCCcEEEEeccHHh
Confidence 5777877777999999999 8999999999999999999998766542111111111 12257789999999999
Q ss_pred CCCCceEEEEeecCHHHHHHHHHhhccc----CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 019899 177 SLPGFRTGVIYSYNESVLAAAKKLTRFC----SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIR 252 (334)
Q Consensus 177 ~~~g~r~g~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 252 (334)
+++| ||+++ ++++.+.+......+ ..++..+.++.++++.. .+. .+..+++.++++++.+.|++.|++
T Consensus 236 ~~~g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~~ 307 (385)
T TIGR01825 236 GVVG---GYAAG-HKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDEL---QRS-PELMERLWDNTRFFKAGLGKLGYD 307 (385)
T ss_pred hcCC---CEEec-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8665 99987 788888886543221 23456666666665432 111 234566777889999999988888
Q ss_pred ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC--CCCCeEEEEecC-CCcccHHHHHHHHHHH
Q 019899 253 CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC--IEPGWFRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~~iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
+..+.+++ +++.++.. .+..+++..|+++ ||.+.+ ..++. ....++|++++. .+++++++++++++++
T Consensus 308 ~~~~~~~~-~~~~~~~~------~~~~~~~~~L~~~-gi~v~~-~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~ 378 (385)
T TIGR01825 308 TGGSETPI-TPVVIGDE------KAAQEFSRRLFDE-GIFAQS-IVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKV 378 (385)
T ss_pred CCCCCCCE-EEEEECCH------HHHHHHHHHHHHC-CcEEcc-cCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 87766654 33444321 2345788887775 998854 33332 234689998864 7999999999999999
Q ss_pred HHHc
Q 019899 330 AETC 333 (334)
Q Consensus 330 ~~~~ 333 (334)
+++.
T Consensus 379 ~~~~ 382 (385)
T TIGR01825 379 GKEL 382 (385)
T ss_pred HHHh
Confidence 8764
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=217.34 Aligned_cols=297 Identities=15% Similarity=0.182 Sum_probs=212.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCC--------CccccHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD--------NFAFSITALDQAF 88 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~--------~~~~~~~~l~~~l 88 (334)
.+++++|+|+++|+.+++.+++++||.| +++|.|..+...+. ..|.+++.+++++.. .+.+|++.|++++
T Consensus 68 ~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~-~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I 145 (431)
T cd00617 68 FKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIE-ANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLI 145 (431)
T ss_pred CCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHH-hCCCEeEEEecccccccccccCCCCCcCHHHHHHHh
Confidence 4689999999999999999999999977 68999999988888 899999999986432 2459999999999
Q ss_pred HHHHHcCCceeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCcEEEEecccccc--cc-----CCCCcchhhhhhhccc
Q 019899 89 NQARKRGVKVRGILICNPANPV-GNIIPRETLYELLDFAREKNIHVISDEIYGGS--IF-----GNEEFVSMAEILEAEE 160 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~--~~-----~~~~~~~~~~~~~~~~ 160 (334)
++. ...++++|++++|+||+ |++++.++++++.++|++||++||+|+++... .+ ++....++.+..
T Consensus 146 ~~~--~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~---- 219 (431)
T cd00617 146 DEV--GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIA---- 219 (431)
T ss_pred Ccc--cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHH----
Confidence 852 01247889999999998 99999999999999999999999999995421 11 122223333321
Q ss_pred cCCCcEEEEecccccCCCCCce------EEEEeecCHHHHHHHHHhh-------cccCCChHHHHHHHHhhCChHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFR------TGVIYSYNESVLAAAKKLT-------RFCSISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r------~g~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
+.+.|++|.+.++|.| .||++++++++.+.++.+. ++.+.+.....+++..+..... .
T Consensus 220 ------~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~-- 290 (431)
T cd00617 220 ------REMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE-E-- 290 (431)
T ss_pred ------HHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhccc-H--
Confidence 1233444444444443 5789986667888887532 1122333433444434433110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcC-CCC-cCC--
Q 019899 228 LETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTP-GSA-CHC-- 301 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~-g~~-~~~-- 301 (334)
..+.+++. +++++.+.|++.|+++..|.+++++|++.+...+. ....++.+++.+|+++.||.+.. |+. ++.
T Consensus 291 -~~l~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~ 368 (431)
T cd00617 291 -DYLRHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDP 368 (431)
T ss_pred -HHHHHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCC
Confidence 22333333 55899999999999999999999999998864321 12235788999999999998643 442 111
Q ss_pred C-------CCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 302 I-------EPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 ~-------~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
. .-+.+|+.+.. .|.++++.+.+.+..+.++
T Consensus 369 ~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 369 NTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred CCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 1 12579999984 5999999999999998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=215.62 Aligned_cols=300 Identities=14% Similarity=0.137 Sum_probs=208.7
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
-+++.+++.+++ +++++++|+++++.+++.+++++||+|+++.++|.+....++ ..|.+++.++...++++.+|++.
T Consensus 67 ~l~~~lA~~~g~--~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~ 143 (387)
T PRK09331 67 DFHEDLAEFLGM--DEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAE-RAGLNVREVPKTGYPEYKITPEA 143 (387)
T ss_pred HHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-HcCCEEEEEeCccCcCCCcCHHH
Confidence 345555655554 568899999999999999999999999999999999888887 88999999997433466799999
Q ss_pred HHHHHHHHH-HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQAR-KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~-~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++.. ..++++++|++++|+||||.+.+ +++|.++|+++|+++++|++|+.... ..+...
T Consensus 144 l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~~----~~~~~~-------- 208 (387)
T PRK09331 144 YAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGRM----PVDGKK-------- 208 (387)
T ss_pred HHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCCc----CCCHHH--------
Confidence 999997531 12346899999999999999999 99999999999999999999985221 122221
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc--------C--CChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--------S--ISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.+.++++.|++|+++ .+.++|++++ ++++++.+.+....+ + .++....++...+ +.+.+... ..
T Consensus 209 ~g~D~~~~s~~K~l~-~~~~~G~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal---~~~~~~~~-~~ 282 (387)
T PRK09331 209 LGADFIVGSGHKSMA-ASAPSGVLAT-TEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASF---PHVVERVK-RW 282 (387)
T ss_pred cCCCEEEeeCccccc-CCCCEEEEEE-CHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHH---HHHHHHHH-HH
Confidence 456788999999997 5568999998 778777765432211 1 1111222222222 22223332 34
Q ss_pred HHHHHHHHHHHHHHHhC-CCcccC--CCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 233 RRIKKLYDSFVAGLKQL-GIRCSE--SSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~-g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
++..++.+++.+.|+++ |+++.. +....++.++.|.... ......+.++.+.| +++||...+.. ....+
T Consensus 283 ~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~~~~~~-----~~~i~ 356 (387)
T PRK09331 283 DEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEEL-KKRGIHGIKPG-----ATKEF 356 (387)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHH-HHcCceEEccC-----CceEE
Confidence 45567788999999998 888763 2223344456552211 01112335677785 56799843211 13456
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 308 RCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 308 Ri~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
|+.....++++++++++.|+++++++
T Consensus 357 ri~~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 357 KLSTYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 77664379999999999999998764
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=212.11 Aligned_cols=297 Identities=16% Similarity=0.145 Sum_probs=198.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC-CCCeEEecCCCCCChhh---hhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD-HGNALLVPSPYYPGFDR---DIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~-~gd~vl~~~p~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+++.++. +.+++++++++++..++.++++ +||+|++++|+|.+... .+. ..|.+++.+|.+ +++.+|
T Consensus 45 l~~~la~~~~~--~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d 119 (353)
T PLN02721 45 LEEEMAKIFGK--EAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGIST-LGGVHPRTVKNN--EDGTMD 119 (353)
T ss_pred HHHHHHHHhCC--ceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhh-hcCceeEecCCC--cCCCcC
Confidence 34445554544 3356666677777788887777 99999999999876655 345 689999998863 445789
Q ss_pred HHHHHHHHHHHHHc-CCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 81 ITALDQAFNQARKR-GVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 81 ~~~l~~~l~~~~~~-~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
++++++++++.... ..++++++++++ +||+|.++|.+++++|.++|+++|+++++|++|...... ........+.
T Consensus 120 ~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~-~~~~~~~~~~-- 196 (353)
T PLN02721 120 LDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASV-ALGVPVHRLV-- 196 (353)
T ss_pred HHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchh-hhCCCHHHHh--
Confidence 99999999742111 136888999886 789999999999999999999999999999997532210 0011111111
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
.+...++.|+||+++. +.|+++..++++++.+......++ .+...+.++..+.. ++++..+++ +..
T Consensus 197 ----~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~-~~~ 264 (353)
T PLN02721 197 ----KAADSVSVCLSKGLGA---PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA----LQENVPKLE-DDH 264 (353)
T ss_pred ----hhCCEEEEecccccCC---ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH----HHHHHHHHH-HHH
Confidence 2333456689999863 356643348888888776554432 22222222222211 123333332 335
Q ss_pred HHHHHHHHHHHhC-CCcc-cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec-C
Q 019899 237 KLYDSFVAGLKQL-GIRC-SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT-S 313 (334)
Q Consensus 237 ~~~~~~~~~l~~~-g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~-~ 313 (334)
++++++.+.|+++ +++. ..+..+.++|++++.... .+..++.+.|. ++||.+.|+. ++++|++++ .
T Consensus 265 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~-~~gi~v~~~~------~~~lR~~~~~~ 333 (353)
T PLN02721 265 KKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSR----ITAEKLCKSLE-EHGVLLMPGN------SSRIRVVTHHQ 333 (353)
T ss_pred HHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCcc----ccHHHHHHHHH-hCCcEEecCC------CceEEEEecCc
Confidence 6678899999887 6644 333334568888875211 13467888855 6899999874 468999997 3
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 019899 314 LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++++++++++|++++..
T Consensus 334 ~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 334 ISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 6999999999999998754
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=218.36 Aligned_cols=285 Identities=18% Similarity=0.236 Sum_probs=205.0
Q ss_pred hhhhhcCCCCCC-CCcEEEecCcHHHHHHHHHHhcC---CCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCC
Q 019899 5 MSQVLGQAVSFD-PSQIVLTAGATPAVEILCFCLAD---HGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDN 76 (334)
Q Consensus 5 ~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l~~---~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~ 76 (334)
+++.+++.++.+ ++++++|+|++++++.++.++.. +||+|++++++|++... ..+ ..|.+++.++++ ++
T Consensus 48 ~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~ 124 (373)
T cd06453 48 AREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAE-RTGAKLKVVPVD--DD 124 (373)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHh-hcCcEEEEeecC--CC
Confidence 344555556666 77999999999999999999876 89999999999998533 333 579999999984 45
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
+.+|++++++++++ +++++++++|+||||.+.| +++|.++|+++|+++++|++|+.... ..++..
T Consensus 125 ~~~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~----~~~~~~-- 189 (373)
T cd06453 125 GQLDLEALEKLLTE------RTKLVAVTHVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAGHM----PVDVQD-- 189 (373)
T ss_pred CCcCHHHHHHHhcC------CceEEEEeCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcCce----eeeccc--
Confidence 67999999999976 7899999999999999999 88999999999999999999874221 111111
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-----------------------cCCChHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-----------------------CSISAPTQRL 213 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 213 (334)
.+.++++.|++|+++. .++|++++ ++++.+.++..... .+.+.....+
T Consensus 190 ------~~~d~~~~s~~K~~~~--~g~g~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a 260 (373)
T cd06453 190 ------LGCDFLAFSGHKMLGP--TGIGVLYG-KEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIG 260 (373)
T ss_pred ------cCCCEEEeccccccCC--CCcEEEEE-chHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHH
Confidence 3456777899999974 56899998 77777766532210 1233334444
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC--ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcC
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESS--AGLYCWADMSGLIPSYSEKGELELWDKLLNIAK 290 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 290 (334)
+..+++... +..+++++++..+.++++.+.|+++ ++++..+. .+.++++.++.. +..++.+.| +++|
T Consensus 261 l~~al~~l~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~l-~~~g 330 (373)
T cd06453 261 LGAAIDYLE--KIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-------HPHDVATIL-DQYG 330 (373)
T ss_pred HHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------CHHHHHHHH-HHCC
Confidence 444443211 2234566777788889999999887 57765321 233555666532 345777774 5589
Q ss_pred eEEcCCCCcCC------CCCCeEEEEecC-CCcccHHHHHHHH
Q 019899 291 INVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLVIERI 326 (334)
Q Consensus 291 i~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~l~~l 326 (334)
|.+.+|..|.. ..++++|++++. .|++|++++++.|
T Consensus 331 i~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 331 IAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 99988775432 135789999996 5999999998864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=216.17 Aligned_cols=288 Identities=17% Similarity=0.170 Sum_probs=202.9
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
++.+++.++ .++.++++++++++..++..++++||.|++++|+|+.+...+. ..|.+++.++. .|++.++
T Consensus 90 ~~~la~~~~--~~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~-~~g~~~~~~~~-------~d~~~l~ 159 (385)
T PRK05958 90 EEELAEWFG--AERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGAR-LSRARVRRYPH-------NDVDALE 159 (385)
T ss_pred HHHHHHHhC--CCcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHH-hcCCceEEeCC-------CCHHHHH
Confidence 334444443 2455555566677777778889999999999999999998888 88999888874 3788999
Q ss_pred HHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC--CCCcchhhhhhhccccCC
Q 019899 86 QAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG--NEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 163 (334)
+.+++. ..++.++++.+++||+|...+ +++|.++|++||+++|+||+|+.+.++ +........+.. .
T Consensus 160 ~~i~~~---~~~~~lvi~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-----~ 228 (385)
T PRK05958 160 ALLAKW---RAGRALIVTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAG-----E 228 (385)
T ss_pred HHHHhc---cCCCeEEEEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCC-----C
Confidence 988752 013455566667899999988 999999999999999999999775553 222222112221 4
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
++++++.|+||+++++| ||+++ ++++.+.+...... .+.++....++..+++.. +.. .++.+++.+++
T Consensus 229 ~~~i~~~s~sK~~~~~G---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~~-~~~~~~~~~~~ 300 (385)
T PRK05958 229 PDVILVGTLGKALGSSG---AAVLG-SETLIDYLINRARPFIFTTALPPAQAAAARAALRIL---RRE-PERRERLAALI 300 (385)
T ss_pred CceEEEEechhhcccCC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHH
Confidence 67789999999998666 89887 78888777543222 123444444444554332 111 35667888899
Q ss_pred HHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC-CCCCCeEEEEecC-CCcc
Q 019899 240 DSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH-CIEPGWFRCCFTS-LTHE 317 (334)
Q Consensus 240 ~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~~~~~~iRi~~~~-~~~~ 317 (334)
+++.+.|++.++++..+.++ ++|+.++.. .++.++.+.|. ++||.+.++..+. ...++++|++++. .+++
T Consensus 301 ~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~ 372 (385)
T PRK05958 301 ARLRAGLRALGFQLMDSQSA-IQPLIVGDN------ERALALAAALQ-EQGFWVGAIRPPTVPAGTSRLRITLTAAHTEA 372 (385)
T ss_pred HHHHHHHHHcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHH-HCCceEecccCCCCCCCCceEEEEecCCCCHH
Confidence 99999999888887666554 566777542 24467888865 5799998755432 2234789999984 5999
Q ss_pred cHHHHHHHHHHHH
Q 019899 318 DIPLVIERIQKVA 330 (334)
Q Consensus 318 ~l~~~l~~l~~~~ 330 (334)
++++++++|++++
T Consensus 373 ~i~~~l~~l~~~~ 385 (385)
T PRK05958 373 DIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998753
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=213.71 Aligned_cols=289 Identities=15% Similarity=0.116 Sum_probs=200.0
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh---hhhccCcEEEEEeCCCCCCccccHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD---IRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~---~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
++.+++.++ ++++++++|+++++..++.+++++||+|+++.|+|.++... .. ..|.+++.++.+ .+.+|++
T Consensus 38 ~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~---~~~~d~~ 111 (338)
T cd06502 38 EARAAELFG--KEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEF-LSGVKLLPVPGE---NGKLTPE 111 (338)
T ss_pred HHHHHHHhC--CCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCCcHHH-HcCceEEeecCC---CCcCCHH
Confidence 334444444 56788888899999999999999999999999999875542 33 579999999862 2579999
Q ss_pred HHHHHHHHHHH-cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 83 ALDQAFNQARK-RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 83 ~l~~~l~~~~~-~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
++++++++... +..+++++++++|+|| |.+++.+++++|+++|+++|+++++|++|..+....... +.....
T Consensus 112 ~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~~----- 184 (338)
T cd06502 112 DLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV-ALKTYK----- 184 (338)
T ss_pred HHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHHH-----
Confidence 99999874210 1126889999999997 667799999999999999999999999986432211111 222221
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+..+++.|+||+++++| |+++..++++++.++..... ++.++..+.++...++...+ .+..+++.+
T Consensus 185 -~~~d~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~-----~~~~~~~~~ 255 (338)
T cd06502 185 -SGVDSVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLW-----LRRLRHDHE 255 (338)
T ss_pred -hcCCEEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH-----HHHHHHHHH
Confidence 223356779999998776 44443388888888765432 23455666666666654322 234456777
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHH--HhcCeEEcCCCCcCCCCCCeEEEEecC-C
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLL--NIAKINVTPGSACHCIEPGWFRCCFTS-L 314 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~gi~v~~g~~~~~~~~~~iRi~~~~-~ 314 (334)
+++++.+.|+++|+....+.+++.+ ++++.. ......+...+. .++|+.+.+.. .+++|++++. .
T Consensus 256 ~~~~l~~~L~~~~~~~~~~~~~~~~-v~~~~~-----~~~~~~l~~~l~~~~~~gi~~~~~~------~~~lRi~~~~~~ 323 (338)
T cd06502 256 MARRLAEALEELGGLESEVQTNIVL-LDPVEA-----NAVFVELSKEAIERRGEGVLFYAWG------EGGVRFVTHWDT 323 (338)
T ss_pred HHHHHHHHHHhcCCCcccccCCeEE-EecCCc-----cHHHHHHHHHHHHhhhCCEEEEecC------CCeEEEEeecCC
Confidence 7889999999988866666656543 454421 011123333322 14798887642 2689999986 4
Q ss_pred CcccHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQK 328 (334)
Q Consensus 315 ~~~~l~~~l~~l~~ 328 (334)
+++|++++++++++
T Consensus 324 ~~~~i~~~~~~l~~ 337 (338)
T cd06502 324 TEEDVDELLSALKA 337 (338)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=218.67 Aligned_cols=287 Identities=13% Similarity=0.155 Sum_probs=203.3
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh---cCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCC
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL---ADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDN 76 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l---~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~ 76 (334)
-+++.+++.+++++++|++++|+++++..++.++ .++||+|++++++|++.... ++ ..|.+++.+++++ ++
T Consensus 64 ~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~-~~g~~~~~~~~~~-~~ 141 (397)
T TIGR01976 64 DAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAE-RAGAKVKWARVDE-AT 141 (397)
T ss_pred HHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHH-hcCCEEEEEeccc-cC
Confidence 3455566667777778999999999998887775 67999999999999876533 34 6799999999753 24
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
+.+|++++++++++ +++++++++|+||||.+.| +++|.++|+++|+++++|+++.. +.....+ .
T Consensus 142 ~~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~----~~~~~~~---~ 205 (397)
T TIGR01976 142 GELHPDDLASLLSP------RTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYA----PHGLIDV---Q 205 (397)
T ss_pred CCcCHHHHHHhcCC------CceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc----cccCCCH---H
Confidence 67899999999975 7899999999999999999 99999999999999999999753 2222222 1
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc------------cCCChHHHHHHHHhhCChHH-
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF------------CSISAPTQRLLISMLSDTKF- 223 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~- 223 (334)
. .+.++++.|++|++| + |+|++++ ++++++.+...... ++.+.....++..+++....
T Consensus 206 ~-----~~~d~~~~s~~K~~g-~--~~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 276 (397)
T TIGR01976 206 A-----TGADFLTCSAYKFFG-P--HMGILWG-RPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGL 276 (397)
T ss_pred H-----cCCCEEEEechhhcC-C--ceEEEEE-cHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 455677789999886 3 5899998 77777666543211 12222333333333321110
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCC-----CceeEEeeecCCcCCCCChhhHHHHHHHHH
Q 019899 224 -----------IQEYLETNKRRIKKLYDSFVAGLKQLG-IRCSES-----SAGLYCWADMSGLIPSYSEKGELELWDKLL 286 (334)
Q Consensus 224 -----------~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll 286 (334)
+.+.+++.+++..+..+++.+.|++++ +++..+ ..+ ++.+.++.. +..++.++ |
T Consensus 277 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~l~~~-L 347 (397)
T TIGR01976 277 GESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL-------PPQRVVRR-L 347 (397)
T ss_pred CcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-------CHHHHHHH-H
Confidence 011246677778888899999998874 776543 334 444555431 23567777 5
Q ss_pred HhcCeEEcCCCCcCC---------CCCCeEEEEecC-CCcccHHHHHHHH
Q 019899 287 NIAKINVTPGSACHC---------IEPGWFRCCFTS-LTHEDIPLVIERI 326 (334)
Q Consensus 287 ~~~gi~v~~g~~~~~---------~~~~~iRi~~~~-~~~~~l~~~l~~l 326 (334)
+++||.+..|..|+. ...+++|+|++. .|++|++++++.|
T Consensus 348 ~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 348 ADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 668999998866541 134689999986 5899999998864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=216.48 Aligned_cols=295 Identities=16% Similarity=0.140 Sum_probs=206.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+.+.+++.++. ++.+++++| ++++..++..+. .+||.|+++.+.|.++...++ ..|.++..++. .|.+
T Consensus 96 Le~~la~~~g~-~~~i~~~sG-~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~-~~g~~~~~~~~-------~d~~ 165 (410)
T PRK13392 96 LERELADLHGK-ESALLFTSG-YVSNDAALSTLGKLLPGCVILSDALNHASMIEGIR-RSGAEKQVFRH-------NDLA 165 (410)
T ss_pred HHHHHHHHhCC-CCEEEECcH-HHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHH-HcCCeEEEEeC-------CCHH
Confidence 44445555553 455666655 677877777664 378988888888888888777 78988877652 2556
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
.+++.++... ..++++|++++|+||||.+.| +++|.++|+++++++|+||+|+...++... ....... +..
T Consensus 166 ~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g-~g~~~~~---~~~ 236 (410)
T PRK13392 166 DLEEQLASVD--PDRPKLIAFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARG-GGIAERD---GLM 236 (410)
T ss_pred HHHHHHHhcc--CCCCEEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCC-Cchhhhc---cCC
Confidence 6666665321 136889999999999999999 889999999999999999999955543221 1111111 111
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc----CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC----SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
...+++++|+||.+|++| ||+++ ++++.+.+++....+ +.++..+.++..+++..+ . ....++++.++
T Consensus 237 ~~~div~~tlsK~~g~~G---G~~~~-~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~---~-~~~~~~~~~~~ 308 (410)
T PRK13392 237 DRIDMIQGTLAKAFGCLG---GYIAA-SADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLK---T-SQTERDAHQDR 308 (410)
T ss_pred CCCcEEEEEChHhhhccc---chhhc-CHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHh---c-CHHHHHHHHHH
Confidence 223477899999998887 89987 888888887665432 234466666666664322 2 23455778889
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-CCCCeEEEEecC-CCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC-IEPGWFRCCFTS-LTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~~iRi~~~~-~~~ 316 (334)
++++.+.|++.|+++..+.++++ .+.++.. ....++.+.|++++||.+.++.+... ....++|++++. .++
T Consensus 309 ~~~l~~~L~~~g~~~~~~~~~~~-~i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~ 381 (410)
T PRK13392 309 VAALKAKLNANGIPVMPSPSHIV-PVMVGDP------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDD 381 (410)
T ss_pred HHHHHHHHHHcCCCCCCCCCCEE-EEEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCH
Confidence 99999999999988777766654 2333321 13457888877778999998654322 134689999875 599
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+|++++++.|.++.++.
T Consensus 382 edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 382 EDIDALVAALVAIWDRL 398 (410)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999987753
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=211.58 Aligned_cols=292 Identities=18% Similarity=0.232 Sum_probs=221.7
Q ss_pred hhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHh---cCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCc
Q 019899 5 MSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCL---ADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNF 77 (334)
Q Consensus 5 ~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l---~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~ 77 (334)
.|+.+++.+++++ ++|++|+|+|++++.+..++ ..+||+|+++.-.|++..-.++. ..|++++.+|++ ++.
T Consensus 71 aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~--~~g 148 (405)
T COG0520 71 AREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD--DDG 148 (405)
T ss_pred HHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC--CCC
Confidence 4556667778885 89999999999999999998 58999999999999987776652 358899999985 556
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
.++++.+++.+++ ++|+|.+++.+|.||++.| +++|+++|+++|+++++|.+++. +....++..
T Consensus 149 ~~~~~~~~~~i~~------~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~----~h~~idv~~--- 212 (405)
T COG0520 149 LLDLDALEKLITP------KTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA----GHLPIDVQE--- 212 (405)
T ss_pred CcCHHHHHHhcCC------CceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECcccc----CccCCCchh---
Confidence 8999999998886 8999999999999999999 99999999999999999999875 333444432
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc------------------------ccCCChHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR------------------------FCSISAPTQRL 213 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 213 (334)
.+.++++.|.+|++..| ..+|++++ ++++++.+..... .++.+.....+
T Consensus 213 -----l~~Df~afsgHKwl~gP-~GiGvLy~-r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~ 285 (405)
T COG0520 213 -----LGCDFLAFSGHKWLLGP-TGIGVLYV-RKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIG 285 (405)
T ss_pred -----cCCCEEEEcccccccCC-CceEEEEE-chHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHh
Confidence 67889999999966324 34899998 7787777622100 01223334444
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhc
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIA 289 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (334)
+.++++-.+ +--+.+..++.++..+++.+.|++. ++++..+. .+-.+.+.+++. +..++... |.++
T Consensus 286 l~aAl~~~~--~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~-------~~~dv~~~-L~~~ 355 (405)
T COG0520 286 LAAALDYLL--EIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI-------HPHDVATL-LDEK 355 (405)
T ss_pred HHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC-------CHHHHHHH-HHhC
Confidence 444443322 1224677888888999999999987 68887654 344455666654 34677888 5667
Q ss_pred CeEEcCCCCcCCC------CCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 290 KINVTPGSACHCI------EPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 290 gi~v~~g~~~~~~------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
||.++.|..|... .++.+|+|++. .|++|++++++.|+++.+
T Consensus 356 gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 356 GIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred CeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 8999999888542 23459999995 599999999999998764
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=215.22 Aligned_cols=285 Identities=18% Similarity=0.203 Sum_probs=205.4
Q ss_pred CCC-CCCcEEEecCcHHHHHHHHHHhc-----CC-CCeEEecCCCCCChhhhhh--hccCcEEEEEeCCCCCCccccHHH
Q 019899 13 VSF-DPSQIVLTAGATPAVEILCFCLA-----DH-GNALLVPSPYYPGFDRDIR--FRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 13 ~~~-~~~~i~~~~g~~~~~~~~~~~l~-----~~-gd~vl~~~p~~~~~~~~~~--~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++ ++++|++|+|++++++.++.++. ++ +++|+++.+.|+++...+. ...|.+++.+|++ +++.+|+++
T Consensus 55 ~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~--~~g~~d~~~ 132 (382)
T TIGR03403 55 INARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPIN--EQGTITAEQ 132 (382)
T ss_pred cCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecC--CCCCCCHHH
Confidence 444 67899999999999999998762 44 5789999888877665532 1579999999984 345789999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++++ +++++++++|+||||.++| +++|.++|+++|+++++|++++. +....++. . .
T Consensus 133 l~~~i~~------~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~~ivD~a~~~----g~~~~~~~---~-----~ 191 (382)
T TIGR03403 133 VREAITE------KTALVSVMWANNETGMIFP---IKEIGEICKERGVLFHTDAVQAI----GKIPVDVQ---K-----A 191 (382)
T ss_pred HHHhccc------CCeEEEEEcccCCCccccC---HHHHHHHHHHcCCEEEEechhhc----CCCccCcc---c-----c
Confidence 9999876 7899999999999999999 88899999999999999999764 21112221 1 4
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHH-HHHHHH-----HhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNES-VLAAAK-----KLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
+.++++.|++|++|++| +|+++.++.. +...+. .....++.+.+.+.++..+++. ..+.++...+++++
T Consensus 192 ~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~ 266 (382)
T TIGR03403 192 GVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRL---ANEYLDFEKSHVRR 266 (382)
T ss_pred CCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHH---HHHhHHHHHHHHHH
Confidence 55688899999888677 5777763221 111110 0122356777777777777743 23445667788999
Q ss_pred HHHHHHHHHHhC-CCcccCCCc---eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-----------
Q 019899 238 LYDSFVAGLKQL-GIRCSESSA---GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI----------- 302 (334)
Q Consensus 238 ~~~~~~~~l~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~----------- 302 (334)
.++++.+.|+++ ++++..+.. +.++.+.++.. +..++... |.++||.++.|+.|...
T Consensus 267 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-L~~~gI~v~~g~~c~~~~~~~~~v~~~~ 338 (382)
T TIGR03403 267 LRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-------EGEAMLWD-LNKAGIAASTGSACASEDLEANPVMVAI 338 (382)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-------CHHHHHHh-hccCCEEEEchhccCCCCCCcCHHHHHc
Confidence 999999999876 677665431 22334555431 23566777 56789999988766311
Q ss_pred ------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 ------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 ------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+.+|+|+++ .|++|++++++.|++++++.
T Consensus 339 g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 339 GADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred CCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 12579999996 69999999999999988764
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=213.26 Aligned_cols=290 Identities=17% Similarity=0.149 Sum_probs=202.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+.+.+++.++. +.+++++|+++|+..++.++..+||.|+++.+.|.+....+. ..|.+++.++ ..|++++
T Consensus 104 le~~la~~~g~--~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~-~~g~~~~~~~-------~~d~~~l 173 (407)
T PRK07179 104 FEKKLAAFTGF--ESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVR-AAGAQAHPFR-------HNDVDHL 173 (407)
T ss_pred HHHHHHHHhCC--CcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHH-HCCCeEEEec-------CCCHHHH
Confidence 34445544443 567889999999999999999999999999999999988887 7888877665 2589999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++++. ++++|++++++||||.+.| +++|.++|+++|+++|+||+|+...++..+...+..+. ....
T Consensus 174 ~~~l~~~-----~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~----~~~~ 241 (407)
T PRK07179 174 RRQIERH-----GPGIIVVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELG----LTSR 241 (407)
T ss_pred HHHHHhc-----CCeEEEECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcC----CCCC
Confidence 9999752 4778888889999999999 88999999999999999999986544322111121211 1123
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCC--ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSI--SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
.++++.|+||++| + |+|++++ ++++++.+...... ++. ++....++..+++. +. .....+++++++++
T Consensus 242 vdi~~~S~sK~~g-~--~~G~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~---~~-~~~~~~~~l~~~~~ 313 (407)
T PRK07179 242 VHFITASLAKAFA-G--RAGIITC-PRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEV---IE-SADDRRARLHANAR 313 (407)
T ss_pred CCEEEeechHhhh-c--cCeEEEe-CHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHH---Hh-cCHHHHHHHHHHHH
Confidence 3578899999997 3 5899998 77887777654322 222 22222233333322 11 12456788999999
Q ss_pred HHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC-cCCCCCCeEEEEecC-CCccc
Q 019899 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA-CHCIEPGWFRCCFTS-LTHED 318 (334)
Q Consensus 241 ~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~-~~~~~~~~iRi~~~~-~~~~~ 318 (334)
++.+.|+++|+++. +. +.++++.++.. .+...+.+. +.++||.+..-.. .....++++||+++. .|++|
T Consensus 314 ~l~~~L~~~g~~v~-~~-~~i~~l~~~~~------~~~~~~~~~-L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~ed 384 (407)
T PRK07179 314 FLREGLSELGYNIR-SE-SQIIALETGSE------RNTEVLRDA-LEERNVFGAVFCAPATPKNRNLIRLSLNADLTASD 384 (407)
T ss_pred HHHHHHHHcCCCCC-CC-CCEEEEEeCCH------HHHHHHHHH-HHHCCceEeeecCCCCCCCCceEEEEECCCCCHHH
Confidence 99999999888766 33 34556665431 123345555 5668997431100 011125789999985 69999
Q ss_pred HHHHHHHHHHHHHHc
Q 019899 319 IPLVIERIQKVAETC 333 (334)
Q Consensus 319 l~~~l~~l~~~~~~~ 333 (334)
++++++.|++++++.
T Consensus 385 i~~~~~~l~~~~~~~ 399 (407)
T PRK07179 385 LDRVLEVCREARDEV 399 (407)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=212.77 Aligned_cols=292 Identities=20% Similarity=0.180 Sum_probs=208.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC----CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD----HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~----~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+++.++++++++++++|+++++..++.++.+ ++|+|+++++.|+++...++ ..|.+++.+|.+ +++.+|
T Consensus 64 ~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~-~~g~~~~~v~~~--~~~~~d 140 (371)
T PRK13520 64 AVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAAD-MLGVELRRAPLD--DDYRVD 140 (371)
T ss_pred HHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHH-HcCceEEEecCC--CCCcCC
Confidence 44445555666777889999999999998877643 57899999999999988887 889999999873 456789
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++++|+||.+.| +++|.++|+++|+++++|++|+.+..+-...........
T Consensus 141 ~~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~--- 208 (371)
T PRK13520 141 VKAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL--- 208 (371)
T ss_pred HHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC---
Confidence 9999999986 6777888888999999999 999999999999999999999865421000000000100
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----------cCCChHHHHHHHHhhCChHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----------CSISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
.+.+.+..|.+|+. .+|.++|+++..++++.+.+.....+ ++.+.....++..+++... ++.+.+
T Consensus 209 --~~vd~~~~s~~K~~-~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~--~~g~~~ 283 (371)
T PRK13520 209 --PGVDSITIDPHKMG-LAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLG--REGYRK 283 (371)
T ss_pred --CCCceEEECCcccc-CccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhc--HhHHHH
Confidence 34455666888954 46788998887677777766422111 1123344444555554321 233466
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc-ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEE
Q 019899 231 NKRRIKKLYDSFVAGLKQLGIR-CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRC 309 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi 309 (334)
+.++..++++++.+.|++.|++ +..+..++ +.++++. ..++.+.|. ++||.+.++. .++++|+
T Consensus 284 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-v~~~~~~---------~~~v~~~L~-~~gi~v~~~~-----~~~~iRi 347 (371)
T PRK13520 284 VVERCMENTRWLAEELKERGFEPVIEPVLNI-VAFDDPN---------PDEVREKLR-ERGWRVSVTR-----CPEALRI 347 (371)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEecCCCceE-EEEecCC---------HHHHHHHHH-HCCceeccCC-----CCCEEEE
Confidence 7788889999999999988887 55555554 4456552 357777754 4799987643 2468999
Q ss_pred EecC-CCcccHHHHHHHHHHHHHH
Q 019899 310 CFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 310 ~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++++ .+++|++++++.|++++++
T Consensus 348 s~~~~~t~edi~~~~~~l~~~~~~ 371 (371)
T PRK13520 348 VCMPHVTREHIENFLEDLKEVKKR 371 (371)
T ss_pred EEECCCCHHHHHHHHHHHHHHhhC
Confidence 9875 5899999999999988764
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=214.28 Aligned_cols=290 Identities=17% Similarity=0.197 Sum_probs=206.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc---CCCCeEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA---DHGNALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~~~ 79 (334)
+++.+++.+++++++|++|+|++++++.++.++. .++|+|+++..+|+++...+.. ..|.+++.++++ .++.+
T Consensus 47 ~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~g~~ 124 (379)
T TIGR03402 47 AREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVD--EEGRL 124 (379)
T ss_pred HHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccC--CCCcC
Confidence 4455666777888999999999999999988763 4578999999899877654431 369999999874 34579
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ +++++++++++||||.++| +++|.++|+++|+++++|++++. +....++..
T Consensus 125 ~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~~~~~----g~~~~~~~~----- 186 (379)
T TIGR03402 125 DLEELRAAITD------DTALVSVMWANNETGTIFP---IEEIGEIAKERGALFHTDAVQAV----GKIPIDLKE----- 186 (379)
T ss_pred CHHHHHHhcCC------CcEEEEEEcccCCeeeccc---HHHHHHHHHHcCCEEEEECcccc----cccccCccc-----
Confidence 99999999975 7899999999999999999 78899999999999999999874 222222221
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHH--HHH-----HHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVL--AAA-----KKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.+.++++.|.+|.+|++| +|+++.++ +.. ..+ ......++.+.....++..+++. ..+++++..
T Consensus 187 ---~~~D~~~~s~~K~~gp~G--~g~l~v~~-~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~~~~~~ 257 (379)
T TIGR03402 187 ---MNIDMLSLSGHKLHGPKG--VGALYIRK-GTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAEL---ATEHLEEEN 257 (379)
T ss_pred ---CCCCEEEEcHHHcCCCCc--eEEEEECC-CCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHHH---HHHhHHHHH
Confidence 456678889999666555 67777633 221 001 00012234555555655555533 344566777
Q ss_pred HHHHHHHHHHHHHHHh-C-CCcccCCC-----ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC---
Q 019899 233 RRIKKLYDSFVAGLKQ-L-GIRCSESS-----AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--- 302 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~-~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--- 302 (334)
++.+++++++.+.|.+ . ++++..+. +...+|+..+ +..++... ++++||.+.+|..|...
T Consensus 258 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-l~~~gI~v~~g~~c~~~~~~ 327 (379)
T TIGR03402 258 TRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI---------EGEAILLL-LDMEGICASSGSACTSGSLE 327 (379)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC---------CHHHHHHh-hccCCEEEEchhhcCCCCCC
Confidence 8888888999998875 4 55555432 1233343321 23567776 57789999999877543
Q ss_pred --------------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 --------------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 --------------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+.+|+|++. .|++|++++++.|+++++++
T Consensus 328 ~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~ 373 (379)
T TIGR03402 328 PSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL 373 (379)
T ss_pred cCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 13689999996 69999999999999988764
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=211.00 Aligned_cols=286 Identities=13% Similarity=0.137 Sum_probs=194.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh--hhhccC-cEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD--IRFRTG-VELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~--~~~~~g-~~v~~v~~~~~~~~~~~~ 81 (334)
+++.+++.+++ +.+++++|+++++.+++.+++.+||+|+++.|+|...... .. ..+ .+++.+++ +.++.+|+
T Consensus 39 L~~~la~~~g~--~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~d~ 113 (333)
T PRK10534 39 LQDYAAELSGK--EAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAGGAA-VLGSIQPQPIDA--AADGTLPL 113 (333)
T ss_pred HHHHHHHHhCC--CeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCCchH-HhcCceEEeecC--CCCCCCCH
Confidence 45555655554 4456888888889888888899999999998888542322 23 333 67777776 34678999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++...+..++++|++++|+ +|.+++.+++++|+++|++++++|++||+|....... .......+.. .
T Consensus 114 ~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~-~~~~~~~~~~---~ 187 (333)
T PRK10534 114 DKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVA-YGCELKEITQ---Y 187 (333)
T ss_pred HHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHH-cCCCHHHHHh---c
Confidence 99999886421111257899999766 5999999999999999999999999999976321100 0012222211 0
Q ss_pred CCCcEEEEecccccCCCCCceEE-EEeecCHHHHHHHHHhhcccCC----ChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTG-VIYSYNESVLAAAKKLTRFCSI----SAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g-~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
.+++ +.||||.++++ +| |+++ ++++++.+++....++. +.+.+.+....++. . .+..++..
T Consensus 188 -~~~~--~~s~SK~~~~~---~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~------~-~~~~~~~~ 253 (333)
T PRK10534 188 -CDSF--TICLSKGLGTP---VGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH------N-VARLQEDH 253 (333)
T ss_pred -CCEE--EEEeEcCCCCc---ccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh------h-HHHHHHHH
Confidence 1222 34899988754 67 5776 89999999876654432 22334443333321 1 12222344
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CC
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LT 315 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~ 315 (334)
++++++.+.|++.|+++..+ .++|+|++++.. +..++.+ +++++||.+.|+. ++|++.+. ++
T Consensus 254 ~~r~~l~~~L~~~g~~~~~~-~~nfv~~~~~~~-------~~~~~~~-~l~~~gi~v~~~~--------~~rl~~~~r~t 316 (333)
T PRK10534 254 DNAAWLAEQLREAGADVMRQ-DTNMLFVRVGEE-------QAAALGE-YMRERNVLINASP--------IVRLVTHLDVS 316 (333)
T ss_pred HHHHHHHHHHHhCCCccCCC-CceEEEEECCch-------hHHHHHH-HHHHcCeeecCCc--------eEEEEEEeCCC
Confidence 56789999999999988776 577888988731 2345654 4777899998863 47887753 69
Q ss_pred cccHHHHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKVAET 332 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~~ 332 (334)
++++++++++|++++.+
T Consensus 317 ~e~~~~~~~~l~~~~~~ 333 (333)
T PRK10534 317 REQLAEVVAHWRAFLAR 333 (333)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999988753
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=211.27 Aligned_cols=291 Identities=16% Similarity=0.142 Sum_probs=202.7
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc------CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA------DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~------~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
.+++.+++.++++++++++++|+++++..++.++. ++||+|++++++|.++...++ ..|.+++.++.+ .++
T Consensus 63 ~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~-~~G~~~~~v~~~--~~~ 139 (373)
T TIGR03812 63 EVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAE-MLGLELRYAPLD--EDY 139 (373)
T ss_pred HHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHH-HcCCeEEEEeeC--CCC
Confidence 45566667777888889999999999988876653 467899999999999988888 889999999974 456
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc-chhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF-VSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~-~~~~~~~ 156 (334)
.+|++++++++++ ++..++++.|+||||.+.| +++|.++|+++|+++++|++|+.+..+-... .....+.
T Consensus 140 ~~d~~~l~~~l~~------~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d 210 (373)
T TIGR03812 140 TVDVKDVEDLIDD------NTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD 210 (373)
T ss_pred CcCHHHHHHHHhh------CcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc
Confidence 7999999999976 4545666668999999999 8899999999999999999997543210000 0000000
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----------cCCChHHHHHHHHhhCChHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----------CSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
- . ..+...+..|.+| +++++.+.|+++..++++.+.+.....+ ++.+.....++...++... ++
T Consensus 211 ~--~-~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~--~~ 284 (373)
T TIGR03812 211 F--S-LPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLG--RE 284 (373)
T ss_pred c--c-CCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhC--HH
Confidence 0 0 0233455668889 5556777887665577777766422211 1122334444444443211 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQLGIRC-SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~ 305 (334)
.+++..+++.++++++.+.|++.|+.. ..+..+ ++.+.++. ..++.+.| .++||.+.++. .++
T Consensus 285 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---------~~~v~~~L-~~~gi~v~~~~-----~~~ 348 (373)
T TIGR03812 285 GYRKIVAECMENTRYLVEELKKIGFEPVIEPVLN-IVAFEVDD---------PEEVRKKL-RDRGWYVSVTR-----CPK 348 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCce-EEEEEeCC---------HHHHHHHH-HHCCceeccCC-----CCC
Confidence 456778889999999999999988753 344344 44455553 24677775 45799987653 256
Q ss_pred eEEEEecC-CCcccHHHHHHHHHH
Q 019899 306 WFRCCFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 306 ~iRi~~~~-~~~~~l~~~l~~l~~ 328 (334)
++|++++. .+++|++++++.|++
T Consensus 349 ~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 349 ALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred EEEEEEECCCCHHHHHHHHHHHhh
Confidence 89999986 599999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=196.36 Aligned_cols=280 Identities=20% Similarity=0.246 Sum_probs=216.7
Q ss_pred EEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCce
Q 019899 21 VLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKV 98 (334)
Q Consensus 21 ~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 98 (334)
+=|.|+|.|+.+....+ ..+..+|.+++|+|+++..++. ..|.++.++|..+..+..+|.+.+...|+... .+.
T Consensus 98 ~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~-~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~---~~~ 173 (396)
T COG1448 98 VQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFE-AAGLEVETYPYYDAETKGLDFDGMLADLKTAP---EGS 173 (396)
T ss_pred eecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHH-hcCCceeeeeccccccccccHHHHHHHHHhCC---CCC
Confidence 44678999998886665 3456679999999999999999 99999999999877777899999999888751 122
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC-CcchhhhhhhccccCCCcEEEEecccccCC
Q 019899 99 RGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAEILEAEEVDKDRVHIIYGLSKDLS 177 (334)
Q Consensus 99 ~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~ 177 (334)
-+++...+|||||.-.+.+++++|+++.++.+++.++|-+|++|.-+-. ....+..+... ....+++.|+||.+|
T Consensus 174 vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~----~~~~lva~S~SKnfg 249 (396)
T COG1448 174 VVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEV----GPELLVASSFSKNFG 249 (396)
T ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHh----CCcEEEEehhhhhhh
Confidence 2233333399999999999999999999999999999999999765422 12223333321 334788999999999
Q ss_pred CCCceEEEEe--ecCHHHHHHHHHh-----hc-ccCCChHHHHHHHHhhCChHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019899 178 LPGFRTGVIY--SYNESVLAAAKKL-----TR-FCSISAPTQRLLISMLSDTKFI---QEYLETNKRRIKKLYDSFVAGL 246 (334)
Q Consensus 178 ~~g~r~g~i~--~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 246 (334)
+.|.|+|.+. +.+.+..+++... +. +.+++.......+..|.+.+.- ++.+..+++++.++++.|.+.|
T Consensus 250 LYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L 329 (396)
T COG1448 250 LYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDAL 329 (396)
T ss_pred hhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999854 4566665555432 33 3456667888888999886543 3346789999999999999999
Q ss_pred HhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 247 KQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 247 ~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
++. .|.......|||.+..++ .+-+.+|.+++||++..+. |+|++.+++.+++.+
T Consensus 330 ~~~~~~~~f~~i~~Q~GMFsy~Gls-----------~~QV~rLree~~IY~v~sG----------Ri~vaGl~~~ni~~v 388 (396)
T COG1448 330 KALGAPRNFDFIISQRGMFSYTGLS-----------PEQVDRLREEFGIYLVASG----------RINVAGLNTSNIDYV 388 (396)
T ss_pred HhhCCCcccchHhhcCceeecCCCC-----------HHHHHHHHHhccEEEecCC----------eeeeccCChhhHHHH
Confidence 984 577778888998766444 3677888999999986422 999998999999999
Q ss_pred HHHHHHH
Q 019899 323 IERIQKV 329 (334)
Q Consensus 323 l~~l~~~ 329 (334)
.+.+.++
T Consensus 389 a~ai~~v 395 (396)
T COG1448 389 AKAIAAV 395 (396)
T ss_pred HHHHHhh
Confidence 9998875
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=212.67 Aligned_cols=274 Identities=14% Similarity=0.108 Sum_probs=197.1
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCC-CeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCCCCccccHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHG-NALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~g-d~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~~~~~~~~~~ 83 (334)
++++++++|+++++..++..+..+| ++|+..+++|+++........|. ++..+|. .|++.
T Consensus 103 ~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 175 (398)
T PRK03244 103 GGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDA 175 (398)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHH
Confidence 4799999999999999998765555 56777778888764332212222 2233331 37888
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHH-HHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRET-LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~-l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++ ++++|+++.++||+|.+.+.++ +++|.++|++||+++|+||+|.++.+.|..+ .+ ... +..
T Consensus 176 l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~-~~~---~~~ 244 (398)
T PRK03244 176 LAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-AH-QHD---GVT 244 (398)
T ss_pred HHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-hh-hhh---CCC
Confidence 9888853 7888998888999999997765 9999999999999999999998766544322 11 111 111
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
++ +.++||+++ +|+|+|++++ ++++.+.+.. ....++.+++.+.++.++++..+ + ....++++++.+
T Consensus 245 pD----i~t~sK~l~-~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~---~~~~~~~~~~~~ 313 (398)
T PRK03244 245 PD----VVTLAKGLG-GGLPIGACLA-FGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIA--S---EGLLENAERLGE 313 (398)
T ss_pred CC----EEEEchhhh-CCcccEEEEE-cHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHH--h---ccHHHHHHHHHH
Confidence 22 347899998 8999999999 7778887764 34456788999988888875322 1 234456667778
Q ss_pred HHHHHHHhCCCccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcc
Q 019899 241 SFVAGLKQLGIRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHE 317 (334)
Q Consensus 241 ~~~~~l~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~ 317 (334)
++.+.|++++.... ....|.++|+.++.. ....+.+.++ ++||.+.|.. .+.+|++++. .+++
T Consensus 314 ~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~p~~~~t~~ 379 (398)
T PRK03244 314 QLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAR-EAGFLVNAVA------PDVIRLAPPLIITDA 379 (398)
T ss_pred HHHHHHHhcCCCceeeEeeccEEEEEEEecc-------HHHHHHHHHH-HCCeEEeecC------CCEEEEECCCcCCHH
Confidence 88888887654322 223678888988642 2356777754 4899998732 4689999885 6999
Q ss_pred cHHHHHHHHHHHHHHc
Q 019899 318 DIPLVIERIQKVAETC 333 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~ 333 (334)
|+++++++|.+++++.
T Consensus 380 ~i~~~~~~l~~~l~~~ 395 (398)
T PRK03244 380 QVDAFVAALPAILDAA 395 (398)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998764
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-27 Score=197.51 Aligned_cols=307 Identities=15% Similarity=0.215 Sum_probs=204.9
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHH--HHHHh----cC--------CCCeEEecCCCCCChhhhhhhccCcEEEEEeC
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEI--LCFCL----AD--------HGNALLVPSPYYPGFDRDIRFRTGVELIPVHC 71 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~--~~~~l----~~--------~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~ 71 (334)
++.++..+++++++|++..+++-.++. +..++ .. +.-++|+|.|.|..+..+++ ..|.+.++||+
T Consensus 75 r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E-~~Giemi~VpM 153 (425)
T PF12897_consen 75 RELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITE-HFGIEMIPVPM 153 (425)
T ss_dssp HHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHH-HCT-EEEEEEE
T ss_pred HHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHH-hhCcEEEecCC
Confidence 444555667899999999888766532 22222 11 12478999999999999999 99999999997
Q ss_pred CCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHH-HHhcCcEEEEeccccccccCC--C
Q 019899 72 RSTDNFAFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDF-AREKNIHVISDEIYGGSIFGN--E 147 (334)
Q Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~-~~~~~~~vi~D~~~~~~~~~~--~ 147 (334)
...+.|++.+++.+.+. ..+|.+|++-- +||||.++|.+.+++++++ ....++.|+.|++|.-..+.. .
T Consensus 154 ---~~dGPDmD~Ve~LV~~D----~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~ 226 (425)
T PF12897_consen 154 ---TEDGPDMDMVEELVAED----PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEP 226 (425)
T ss_dssp ---ETTEE-HHHHHHHTHTS----TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS
T ss_pred ---CCCCCCHHHHHHHHhcC----CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeecccccc
Confidence 44478999999998642 47887776644 8999999999999999998 456899999999998766522 1
Q ss_pred --CcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChH-
Q 019899 148 --EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTK- 222 (334)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~- 222 (334)
...++...+.+.+. +++++.+.|.||.. .+|.+++++.+ +++-++.+.+.... .+..-..|.....++.+.+
T Consensus 227 ~~~~~nil~~~~~AGn-pdrv~~F~STSKIT-f~GaGva~~aa-S~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~g 303 (425)
T PF12897_consen 227 RDALLNILDACAKAGN-PDRVYVFASTSKIT-FPGAGVAFFAA-SEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEG 303 (425)
T ss_dssp ------HHHHHHHTT--TTSEEEEEESTTTS--TTSS-EEEEE--HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHT
T ss_pred chhhhHHHHHHHHcCC-CCeEEEEecccccc-cCCcceeeeec-CHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChhh
Confidence 12356666665444 89999999999976 59999999999 77766777665433 4556689999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-C-----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC-
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQL-G-----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP- 295 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-g-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~- 295 (334)
.+++++.+.++.++-+.+.+.+.|++. + .++..|.+|||++++.+.. .+ .-...|.++.||.+.|
T Consensus 304 Gv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G-------~A-krvV~lakeAGV~LT~A 375 (425)
T PF12897_consen 304 GVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG-------TA-KRVVELAKEAGVALTPA 375 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT--------H-HHHHHHHHHTTEE---T
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC-------hH-HHHHHHHHHhCceeCCC
Confidence 778888888888888888887777653 3 4788999999999999874 23 4445558889999988
Q ss_pred CCCcCCC---CCCeEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 296 GSACHCI---EPGWFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 296 g~~~~~~---~~~~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
|+.|... .+..|||+.+..+.+|++.+++.+.-.++
T Consensus 376 GAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 376 GATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp TTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 7776543 25789999996799999999999887653
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=211.78 Aligned_cols=281 Identities=15% Similarity=0.145 Sum_probs=193.2
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcCCC-------CeEEecCCCCCChhhhhhhccCcEEEEEeCCC-CCCc----cccHHH
Q 019899 16 DPSQIVLTAGATPAVEILCFCLADHG-------NALLVPSPYYPGFDRDIRFRTGVELIPVHCRS-TDNF----AFSITA 83 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~~g-------d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~-~~~~----~~~~~~ 83 (334)
..+++++++|+++|+..++..+...+ ++|++..++|..+........+......+..+ ..++ ..|+++
T Consensus 95 ~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (396)
T PRK02627 95 GMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEA 174 (396)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHH
Confidence 35899999999999999998764322 67999999998765443312232221111100 1111 228899
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVG-NIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG-~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++ ++++|+++.++||+| .+++.+.+++|.++|++||+++|+||+|.++.+.+.. ...... +.
T Consensus 175 l~~~i~~------~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~-~~~~~~----~~- 242 (396)
T PRK02627 175 LKAAITD------KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL-FAYQHY----GI- 242 (396)
T ss_pred HHHhcCC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce-eeehhc----CC-
Confidence 9998854 789899888899999 6889999999999999999999999999987665532 111111 11
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
..+ +.++||.++ +|+|+||+++ ++++.+.+.. ....++.+++.+.++.++++..+. ++. .++++++.+
T Consensus 243 ~pd---i~t~sK~~~-~G~rig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~----~~~~~~~~~ 312 (396)
T PRK02627 243 EPD---IMTLAKGLG-GGVPIGAVLA-KEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGL----LENAAEVGE 312 (396)
T ss_pred CCC---EEEEcchhh-CCcccEEEEE-cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccH----HHHHHHHHH
Confidence 112 347999999 9999999998 7788887764 345567889999998888864321 122 233334444
Q ss_pred HHHHHHHh----CCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CC
Q 019899 241 SFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LT 315 (334)
Q Consensus 241 ~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~ 315 (334)
++.+.|.+ ++........|.++|++++. +..++...+++ +||.+.|+. .+++|++++. .+
T Consensus 313 ~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~-~Gv~v~~~~------~~~lRi~~~~~~~ 377 (396)
T PRK02627 313 YLRAKLRELLEKYPGIKEVRGLGLMIGIELDR--------PAAEIVKKALE-KGLLINVTG------DNVLRLLPPLIIS 377 (396)
T ss_pred HHHHHHHHHHHhCCCeeeeccCcEEEEEEecC--------cHHHHHHHHHH-CCeEEeecC------CCEEEEECCcccC
Confidence 44444433 32211122357788888732 24678888666 599998864 3679999763 69
Q ss_pred cccHHHHHHHHHHHHHHc
Q 019899 316 HEDIPLVIERIQKVAETC 333 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~~~ 333 (334)
++++++++++|++++++.
T Consensus 378 ~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 378 KEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998753
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=211.51 Aligned_cols=290 Identities=20% Similarity=0.238 Sum_probs=203.0
Q ss_pred hhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccH
Q 019899 6 SQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 6 ~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++.++..++++. ++|++++|+++++..++.+++++||+|+++.++|+++...+. ...|.+++.++.+ .++.+|+
T Consensus 50 ~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~ 127 (376)
T TIGR01977 50 RQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCD--NEGLISP 127 (376)
T ss_pred HHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC--CCCCcCH
Confidence 344455555554 489999999999999999999999999999999988765332 1459999999874 4567899
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ +++++++++|+||||.++| +++|.++|+++|+++|+|++++.... ...+. .
T Consensus 128 ~~l~~~~~~------~~~~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~g~~----~~~~~---~---- 187 (376)
T TIGR01977 128 ERIKRAIKT------NTKLIVVSHASNVTGTILP---IEEIGELAQENGIFFILDAAQTAGVI----PIDMT---E---- 187 (376)
T ss_pred HHHHHhcCC------CCeEEEEECCCCCccccCC---HHHHHHHHHHcCCEEEEEhhhccCcc----CCCch---h----
Confidence 999999965 7899999999999999999 88899999999999999999976332 11211 1
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh------------------hcccCCChHHHHHHHHhhCChHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL------------------TRFCSISAPTQRLLISMLSDTKF 223 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~ 223 (334)
.+.++++.|++|+++.|. ..|.++.++......+... ...++.+.....++..+++..
T Consensus 188 -~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~-- 263 (376)
T TIGR01977 188 -LAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFI-- 263 (376)
T ss_pred -cCCCEEEecccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHH--
Confidence 566788899999985332 3566655343211111100 001233444445555444321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC----ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESS----AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
.+...+...++..++.+++.+.|++. ++++..+. .+..+++.++.. +..++...|.+++||.+.+|..
T Consensus 264 ~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~~gi~v~~g~~ 336 (376)
T TIGR01977 264 EKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVADILDEKFDIATRTGLH 336 (376)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHHHHHhccCCEEEEcccc
Confidence 12224567778888999999999875 66665431 133455666532 3357777855555999998876
Q ss_pred cCC--------CCCCeEEEEecC-CCcccHHHHHHHHHH
Q 019899 299 CHC--------IEPGWFRCCFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 299 ~~~--------~~~~~iRi~~~~-~~~~~l~~~l~~l~~ 328 (334)
|.. ..++.+|++++. .|++|+++++++|++
T Consensus 337 ~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 337 CAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred cchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 642 245799999885 699999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=201.59 Aligned_cols=293 Identities=20% Similarity=0.242 Sum_probs=222.4
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh--c----CCCCeEEecCCCCCChhhhhhhcc---CcEEEEEeCCCC
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL--A----DHGNALLVPSPYYPGFDRDIRFRT---GVELIPVHCRST 74 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l--~----~~gd~vl~~~p~~~~~~~~~~~~~---g~~v~~v~~~~~ 74 (334)
-.++.+++.+++++++|++|+|+|++++.++... . ++|.+|+++.-.|++....++ .+ |.+|.++|++
T Consensus 48 ~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~-~Le~~g~~Vtyl~V~-- 124 (386)
T COG1104 48 EAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCR-YLERQGFEVTYLPVD-- 124 (386)
T ss_pred HHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHH-HHHhcCCeEEEeCCC--
Confidence 3456667778899999999999999999998873 2 257899999999999999888 54 9999999994
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
.+..+|+++|+++|++ ++.+|-++..||.+|++.| +++|.++|+++++++++|.+++. |+-+.++..
T Consensus 125 ~~G~v~~e~L~~al~~------~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~----Gkipi~~~~ 191 (386)
T COG1104 125 SNGLVDLEQLEEALRP------DTILVSIMHANNETGTIQP---IAEIGEICKERGILFHVDAVQAV----GKIPIDLEE 191 (386)
T ss_pred CCCeEcHHHHHHhcCC------CceEEEEEecccCeeeccc---HHHHHHHHHHcCCeEEEehhhhc----Cceeccccc
Confidence 4668999999999997 8999999999999999999 99999999999999999999876 444444432
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHH-HHH------HHhhcccCCChHHHHHHHHhhCChHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVL-AAA------KKLTRFCSISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
.+.++...|.+|..|+.| +|.++. ++.++ ..+ ++-...++.|.+...++..+++.. .+.
T Consensus 192 --------~~vD~ls~SaHK~~GpkG--iGaLyv-~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a---~~~ 257 (386)
T COG1104 192 --------LGVDLLSFSAHKFGGPKG--IGALYV-RPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIA---VEE 257 (386)
T ss_pred --------cCcceEEeehhhccCCCc--eEEEEE-CCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHH---HHH
Confidence 244566778999888777 788887 33321 111 111233566777777777777542 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCcccC---CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQL--GIRCSE---SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~--g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
+.....++...++++.+.|.+. .+.+.. +.-+..+.+.+|.. .++.+... |+.+||.+..|+.|.+.
T Consensus 258 ~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------~gE~ll~~-L~~~gI~vStGSACsS~ 329 (386)
T COG1104 258 LEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-------EGESLLLA-LDLAGIAVSTGSACSSG 329 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC-------cHHHHHHh-ccccCeEEeccccccCC
Confidence 5667778888999999999875 333322 22233445666654 22445555 88899999999998653
Q ss_pred C-----------------CCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 303 E-----------------PGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 303 ~-----------------~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
. .+.+|||++. .+++|++.+++.+.++++++|
T Consensus 330 ~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr 379 (386)
T COG1104 330 SLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLR 379 (386)
T ss_pred CCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1 2569999997 599999999999999998864
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=207.12 Aligned_cols=284 Identities=15% Similarity=0.117 Sum_probs=196.0
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc---C----CCCeEEecCCCCCChhhhhhhccCcEEE----EEeCCCC
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA---D----HGNALLVPSPYYPGFDRDIRFRTGVELI----PVHCRST 74 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~---~----~gd~vl~~~p~~~~~~~~~~~~~g~~v~----~v~~~~~ 74 (334)
.+.+++.++ .+++++++|+++++..++..+. . ++|+|++++|+|..+..... ..+.... ..++..+
T Consensus 75 ~~~la~~~g--~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (379)
T TIGR00707 75 AEKLVEHSG--ADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGAL-SATGQPKYQKGFEPLVPG 151 (379)
T ss_pred HHHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHH-HhcCChhhhccCCCCCCC
Confidence 344444444 3599999999999999988652 2 37999999999987766555 3332221 1222111
Q ss_pred CCc--cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 75 DNF--AFSITALDQAFNQARKRGVKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 75 ~~~--~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
..+ ..|++++++.+++ ++++|+++.++||+|.. .+.+++++|.++|+++++++|+||+|.++.+.+.. ..
T Consensus 152 ~~~~~~~d~~~l~~~~~~------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~ 224 (379)
T TIGR00707 152 FSYAPYNDIESLKKAIDD------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF-FA 224 (379)
T ss_pred ceeeCCCCHHHHHHHhhh------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh-hh
Confidence 111 1279999998876 78888886557778864 68999999999999999999999999877654432 11
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.... . . ..+ +.++||.++ +|+|+||+++ ++++++.+... ...++.+++.+.++.++++..+ . .
T Consensus 225 ~~~~-~---~-~~d---~~t~sK~~~-~G~riG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~--~ 289 (379)
T TIGR00707 225 YEHY-G---I-EPD---IITLAKGLG-GGVPIGATLA-KEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIE---K--E 289 (379)
T ss_pred HHhc-C---C-CCC---EEEEccccc-CCcccEEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---h--h
Confidence 1111 1 1 122 236899999 9999999998 78888888753 3456678889988887775321 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcc---cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCe
Q 019899 230 TNKRRIKKLYDSFVAGLKQLGIRC---SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~g~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~ 306 (334)
...++++++++.+.+.|++.+... ..+..|.++|++++.. ..++.+. +.++||.+.|+. .++
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~-l~~~Gv~v~~~~------~~~ 354 (379)
T TIGR00707 290 RLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEAP--------CKDIVKK-ALEKGLLVNCAG------PKV 354 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEEecCc--------HHHHHHH-HHHCCcEEeeCC------CCE
Confidence 344556666677777666543221 1223577788887642 3567777 556899999853 478
Q ss_pred EEEEecC-CCcccHHHHHHHHHHH
Q 019899 307 FRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 307 iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
+|++++. .+++++++++++|+++
T Consensus 355 lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 355 LRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHh
Confidence 9999874 6999999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=207.00 Aligned_cols=295 Identities=17% Similarity=0.123 Sum_probs=206.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+.+.+++.++ .+..++++++++++..++..+.. +++.|+.+...|.+....+. ..|.+++.++. .|++
T Consensus 95 Le~~la~~~g--~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~-~~g~~~~~~~~-------~d~~ 164 (402)
T TIGR01821 95 LEAELADLHG--KESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIR-HSGAEKFIFRH-------NDVA 164 (402)
T ss_pred HHHHHHHHhC--CCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHH-HcCCeEEEECC-------CCHH
Confidence 4444555454 24567777778899999888764 67777777677877777777 78887766652 3678
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++++.++... ..++++|++++|+||+|.+.| +++|.++|+++|+++|+||+|+...++... ....... +..
T Consensus 165 ~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g-~g~~~~~---~~~ 235 (402)
T TIGR01821 165 HLEKLLQSVD--PNRPKIIAFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRG-GGIAERD---GLM 235 (402)
T ss_pred HHHHHHHhcc--CCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCC-Cccchhc---cCC
Confidence 8888876421 125788999999999999999 899999999999999999999854443211 1111111 111
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+.+++++|+||.+|++| ||+++ ++++++.++..... .+.++..+.++.+.++.. ++. ...++++.++
T Consensus 236 ~~~div~~t~sKa~g~~G---G~i~~-~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~~-~~~~~~~~~~ 307 (402)
T TIGR01821 236 HRIDIIEGTLAKAFGVVG---GYIAA-SRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL---KES-QDLRRAHQEN 307 (402)
T ss_pred CCCeEEEEechhhhccCC---ceeec-CHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh---hcC-HHHHHHHHHH
Confidence 234678899999998777 89887 88888888764432 235566666666665432 222 3445566788
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~ 316 (334)
.+++.+.|++.|+++..+.+++ +.+.++.. ..+.++.+.|++++||.+.+..+.... ..+++|++++. .++
T Consensus 308 ~~~l~~~L~~~g~~~~~~~~~i-~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~ 380 (402)
T TIGR01821 308 VKRLKNLLEALGIPVIPNPSHI-VPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTD 380 (402)
T ss_pred HHHHHHHHHHcCCCcCCCCCCE-EEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCH
Confidence 8999999999888877666554 34444321 234578888777789999875543222 34689999975 599
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+|++++++.|++++++.
T Consensus 381 edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 381 KMIDDLVEALLLVWDRL 397 (402)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=207.55 Aligned_cols=295 Identities=17% Similarity=0.132 Sum_probs=203.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+.+.+++.++ .+..++.+++++++..++..+.. +++.|+.+...|.+....+. ..+.++..++. .|++
T Consensus 96 l~~~la~~~g--~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~-~~~~~~~~~~~-------~d~~ 165 (407)
T PRK09064 96 LERELADLHG--KEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIR-RSRCEKHIFRH-------NDVA 165 (407)
T ss_pred HHHHHHHHhC--CCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHH-HcCCcEEEECC-------CCHH
Confidence 3444554444 24455555566787777777654 77777777777887777777 77877766652 3788
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++++.++.. ...++++|++++++||+|.+.+ +++|.++|+++|+++|+||+|+...++..+ ..+.... +..
T Consensus 166 ~le~~l~~~--~~~~~~~v~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g-~g~~~~~---~~~ 236 (407)
T PRK09064 166 HLEELLAAA--DPDRPKLIAFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRG-GGIAERD---GLM 236 (407)
T ss_pred HHHHHHHhc--cCCCCeEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCC-CChHHhc---CCC
Confidence 888888632 1126789999999999999999 999999999999999999999854443221 1221211 111
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc----CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC----SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
...+++++||||.+|+.| ||+++ ++++++.+......+ +.++..+.++.+.++ ++++. ...++++.++
T Consensus 237 ~~~div~~t~sKa~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~---~~~~~-~~~~~~~~~~ 308 (407)
T PRK09064 237 DRIDIIEGTLAKAFGVMG---GYIAG-SAALVDAVRSYAPGFIFTTSLPPAIAAAALASIR---HLKES-NEERERHQER 308 (407)
T ss_pred CCCeEEEEecchhhhccC---ceEec-CHHHHHHHHHhCccccccCcCCHHHHHHHHHHHH---HHhcC-HHHHHHHHHH
Confidence 234788899999998777 89988 888888887654332 344444554444443 22222 3346778899
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~ 316 (334)
++++.+.|++.|+++..+.+++ +++.++.. ..+.++.+.|++++||.+.+..+.... ..+++|++++. .++
T Consensus 309 ~~~l~~~L~~~g~~~~~~~~~i-v~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~ 381 (407)
T PRK09064 309 AAKLKAALDAAGIPVMPNESHI-VPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTD 381 (407)
T ss_pred HHHHHHHHHHcCCCCCCCCCCE-EEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCH
Confidence 9999999999888877665554 45555421 234678888777789999876543221 24689999985 699
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+|++++++.|++++++.
T Consensus 382 edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 382 EMIDHLVEALVEVWARL 398 (407)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999988753
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=202.46 Aligned_cols=289 Identities=17% Similarity=0.206 Sum_probs=196.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+.+.++...+ .+++++++|+++++..++.+++++||+|+++.|+|+.+...+. ...|.+++.++. ..|.
T Consensus 88 Le~~lA~leg--~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~------~~d~ 159 (427)
T PRK07049 88 VEDRLAVYEG--AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFAD------GLSE 159 (427)
T ss_pred HHHHHHHHhC--CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeC------CCCH
Confidence 4445554433 5679999999999999999999999999999999999977642 156888777762 2467
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh---cCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE---KNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~---~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+++++++++... ..++++|++++|+||||.++|.+++.++++.|.. +++++++|++|....+. .+ + .
T Consensus 160 ~~l~~~l~~~~~-~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~----~p---l-~- 229 (427)
T PRK07049 160 AAIGAAAEAAAA-KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQ----KP---L-E- 229 (427)
T ss_pred HHHHHHHHhhcc-CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccC----Cc---c-c-
Confidence 888887764311 1268999999999999999998888888877643 78999999998653221 11 1 1
Q ss_pred cccCCCcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.+.++++.|+||.++ .+|+|+||+++ ++++.+.++.....+ +.++..+.++...++.. ..+.++.
T Consensus 230 ----~g~divv~S~SK~~gG~~glr~G~vv~-~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl-------~~R~~~~ 297 (427)
T PRK07049 230 ----HGADLSVYSLTKYVGGHSDLVAGAVLG-RKALIRQVRALRSAIGTQLDPHSCWMLGRSLETL-------VLRMERA 297 (427)
T ss_pred ----cCCCEEEEcCceeecCCCCcEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChH-------HHHHHHH
Confidence 456788999999998 68999999998 788888888766554 36777777777776542 3334556
Q ss_pred HHHHHHHHHHHHhC-CCccc-CC------------------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 236 KKLYDSFVAGLKQL-GIRCS-ES------------------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 236 ~~~~~~~~~~l~~~-g~~~~-~~------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
.++++.+.+.|+++ +++.+ -| ..|-.+.+++... .+....+.+. ++-..+.+.-
T Consensus 298 ~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~-----~~~~~~f~~~-l~l~~~~~sl 371 (427)
T PRK07049 298 NRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGG-----QAAAFRFLNA-LQIFKLAVSL 371 (427)
T ss_pred HHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCC-----HHHHHHHHHc-CcccEEcccC
Confidence 88888999999886 33211 01 1122344555321 1122333333 2222222222
Q ss_pred CCCcCC---------------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 296 GSACHC---------------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 296 g~~~~~---------------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
|..... ..++-+|+|++ -|+.+.+++.|.+++++
T Consensus 372 G~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svG---lE~~~dl~~dl~~al~~ 426 (427)
T PRK07049 372 GGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIG---IEHPDDLIADLAQALDA 426 (427)
T ss_pred CCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeC---cCCHHHHHHHHHHHHhc
Confidence 222100 01356999999 77888999999998864
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=207.01 Aligned_cols=280 Identities=18% Similarity=0.151 Sum_probs=190.9
Q ss_pred CCcEEEecCcHHHHHHHHHHh----cCCCC----eEEecCCCCCChhhhhhhccCcEEEEEeC--CCCCCcc----ccHH
Q 019899 17 PSQIVLTAGATPAVEILCFCL----ADHGN----ALLVPSPYYPGFDRDIRFRTGVELIPVHC--RSTDNFA----FSIT 82 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l----~~~gd----~vl~~~p~~~~~~~~~~~~~g~~v~~v~~--~~~~~~~----~~~~ 82 (334)
.+++++++|+++|+..++..+ ..+|| +|++.++.|+++..... ..+......+. +..+++. .|++
T Consensus 88 ~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 166 (389)
T PRK01278 88 ADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATI-AAGGQEKYLEGFGPLVPGFDQVPFGDIE 166 (389)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHH-hccCChhhcccCCCCCCCceEeCCCCHH
Confidence 478999999999999998876 34565 89999999998876655 33322211110 0011111 5889
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc-hhhhhhhccc
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVG-NIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-SMAEILEAEE 160 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG-~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~-~~~~~~~~~~ 160 (334)
.+++++++ ++++|++..++||+| .++|.+.+++|.++|++||+++|+||+|.++.+.+..+. ....+
T Consensus 167 ~l~~~l~~------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~----- 235 (389)
T PRK01278 167 ALKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGV----- 235 (389)
T ss_pred HHHHhhCC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCC-----
Confidence 99998864 788888886688888 788999999999999999999999999998766554221 11111
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChH--HHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTK--FIQEYLETNKRRIK 236 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~ 236 (334)
.++ +.|+||.++ +|+|+||+++ ++++.+.+... ...++.+++.+.++.+.++..+ ...++..++.++++
T Consensus 236 -~pd----i~t~sK~l~-~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 308 (389)
T PRK01278 236 -TPD----IMAVAKGIG-GGFPLGACLA-TEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLK 308 (389)
T ss_pred -CCC----EEEEehhcc-CCcceEEEEE-cHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 122 458999998 8999999998 77777777543 2345678888888877664321 11222333333333
Q ss_pred HHHHHHHHHHHhCC-CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-C
Q 019899 237 KLYDSFVAGLKQLG-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-L 314 (334)
Q Consensus 237 ~~~~~~~~~l~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~ 314 (334)
++.+.+.+ ... +.......|.++|++++. +..++...|++ +||.+.|+. .+++|++++. .
T Consensus 309 ~~l~~l~~---~~~~~~~~v~g~G~~~~i~~~~--------~~~~~~~~l~~-~GV~~~p~~------~~~lR~~p~~~~ 370 (389)
T PRK01278 309 QKLEGLVD---RFPDVIEEVRGKGLLLGLKCVV--------PNRDLVQALRD-EGLLTVGAG------DNVVRLLPPLII 370 (389)
T ss_pred HHHHHHHh---hCCCceeeEecccEEEEEEEec--------CHHHHHHHHHH-CCeEEeecC------CCEEEEeCCccc
Confidence 33333221 121 211122356777777743 24678888666 599998863 4789999764 6
Q ss_pred CcccHHHHHHHHHHHHHHc
Q 019899 315 THEDIPLVIERIQKVAETC 333 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~~ 333 (334)
+++++++++++|.++++++
T Consensus 371 ~~~~i~~~l~~l~~~l~~~ 389 (389)
T PRK01278 371 TEEEIDEALERLERAAESL 389 (389)
T ss_pred CHHHHHHHHHHHHHHHHhC
Confidence 8999999999999998753
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-26 Score=203.08 Aligned_cols=282 Identities=15% Similarity=0.166 Sum_probs=196.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh----hccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR----FRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~----~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.+.++...+ .+.+++++|+++|+..++.+++++||+|+++.|.|+.+...+. ...|.+++.++. .|
T Consensus 81 LE~~lA~l~g--~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~-------~d 151 (418)
T PLN02242 81 LGRQMAALEG--TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDI-------TD 151 (418)
T ss_pred HHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCC-------CC
Confidence 3344444333 4678899999999999999999999999999999988866542 136777777764 27
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++. ++++|++++|+||||.+.+ +++|+++|+++|++||+|++|..+.+.. . .
T Consensus 152 ~e~l~~~i~~~-----~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~------~---~--- 211 (418)
T PLN02242 152 LEAVKKAVVPG-----KTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSP------A---R--- 211 (418)
T ss_pred HHHHHHhcCcC-----CCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCH------H---H---
Confidence 89999988751 4899999999999999998 9999999999999999999997654311 1 1
Q ss_pred cCCCcEEEEecccccCCCCCce-EEEEeecCHHHHHHHHHhhc----ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFR-TGVIYSYNESVLAAAKKLTR----FCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r-~g~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.+.+++++|+||.++.+|.+ .||+++ ++++++.++.... ..+.+...|.+...+.... . +..+.+++
T Consensus 212 --~g~divv~S~SK~l~g~g~~~gG~iv~-~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~-t----l~~r~~~~ 283 (418)
T PLN02242 212 --LGADVVVHSISKFISGGADIIAGAVCG-PAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP-H----LSLRMKEH 283 (418)
T ss_pred --cCCcEEEEeCccccCCCCCceEEEEEc-CHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC-c----HHHHHHHH
Confidence 35678999999999878876 588887 7888888876533 2344555666666555432 2 23455678
Q ss_pred HHHHHHHHHHHHhCCCcccCCC-------------------ceeEEeeecCCcCCCCChhhHHHHHHHHHHhc----CeE
Q 019899 236 KKLYDSFVAGLKQLGIRCSESS-------------------AGLYCWADMSGLIPSYSEKGELELWDKLLNIA----KIN 292 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----gi~ 292 (334)
.++++++.+.|+++++++..|. .|-.+++++.. ......+++. ++-. .+.
T Consensus 284 ~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~------~~~~~~f~~~-l~~~~~~~~~~ 356 (418)
T PLN02242 284 CRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT------EERANRLMRY-LQNSTQFGFMA 356 (418)
T ss_pred HHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC------HHHHHHHHHH-hhcccccceee
Confidence 8899999999998876554221 23344556631 1223445555 3311 222
Q ss_pred EcCCCCcCC---------------------CCCCeEEEEecCCCcc-cHHHHHHHHHHHHHHc
Q 019899 293 VTPGSACHC---------------------IEPGWFRCCFTSLTHE-DIPLVIERIQKVAETC 333 (334)
Q Consensus 293 v~~g~~~~~---------------------~~~~~iRi~~~~~~~~-~l~~~l~~l~~~~~~~ 333 (334)
+..|..-.. ..++-+|+|++ .| +.+.+++.|.+++++-
T Consensus 357 ~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG---lE~~~~dli~dl~~al~~~ 416 (418)
T PLN02242 357 VSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVG---YTGTLEQRWSQFEKALSAM 416 (418)
T ss_pred ecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec---CCCCHHHHHHHHHHHHHHh
Confidence 333332110 01357999999 66 4888999999988763
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=205.50 Aligned_cols=283 Identities=16% Similarity=0.197 Sum_probs=198.3
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC------------C--CCeEEecCCCCCChhhhhhhccCcEEE
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD------------H--GNALLVPSPYYPGFDRDIRFRTGVELI 67 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~------------~--gd~vl~~~p~~~~~~~~~~~~~g~~v~ 67 (334)
++|+.+.++ .+.+.+++++|+|+|+++..++.++.. + ++.|+++.++|.++...+. ..|.+++
T Consensus 44 ~~~~~~~~g--~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~-~~g~~~~ 120 (345)
T cd06450 44 VNWLAKLFG--LPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAA-YLDVKVR 120 (345)
T ss_pred HHHHHHHhC--CCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHH-HHhcCeE
Confidence 455555544 332456899999999999999988742 2 3478889999999988888 7799999
Q ss_pred EEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC
Q 019899 68 PVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE 147 (334)
Q Consensus 68 ~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~ 147 (334)
.+++++ ++.+|+++|++++++...++.+++++++++|+||||.+.+ +++|.++|+++|+++++|++|+.+.+...
T Consensus 121 ~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~ 195 (345)
T cd06450 121 LVPVDE--DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFP 195 (345)
T ss_pred EeeeCC--CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEEEechhhHHHhhCh
Confidence 999843 3489999999999875555667888999999999999988 99999999999999999999987664321
Q ss_pred CcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHH
Q 019899 148 EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
..... ... . .+.+.+..|++|+++ ++.++|+++.+ ...+.++..++. ...
T Consensus 196 ~~~~~--~~~---~-~~~d~~~~s~~K~l~-~p~g~g~~~~~------------------~~~~~~~l~~l~-----~~g 245 (345)
T cd06450 196 EPRHL--DFG---I-ERVDSISVDPHKYGL-VPLGCSAVLVR------------------ALKLWATLRRFG-----RDG 245 (345)
T ss_pred hhHHH--hcC---c-cccCEEEEchhHhhC-CCcchHHHHHH------------------HHHHHHHHHHHh-----HHH
Confidence 11111 000 0 234556679999876 66778888763 223333333332 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQL-GIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~-g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~ 305 (334)
+++..++..++++++.+.|.++ ++++.. +..++++ +.++... ....+..++.++| .++|+.+.++..+. .+.
T Consensus 246 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~-f~~~~~~--~~~~~~~~i~~~L-~~~g~~~~~~~~~~--~~~ 319 (345)
T cd06450 246 YGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVC-FRLKPSV--KLDELNYDLSDRL-NERGGWHVPATTLG--GPN 319 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEE-EEECCcc--hhhHHHHHHHHHH-HhcCCEEEEeeEEC--CeE
Confidence 4667778888999999999887 676654 4455544 4554311 0012345677775 45665554444332 357
Q ss_pred eEEEEecC-C-CcccHHHHHHHHHH
Q 019899 306 WFRCCFTS-L-THEDIPLVIERIQK 328 (334)
Q Consensus 306 ~iRi~~~~-~-~~~~l~~~l~~l~~ 328 (334)
++|++++. . +++|++++++.|.+
T Consensus 320 ~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 320 VLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHh
Confidence 89999985 4 89999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=208.42 Aligned_cols=290 Identities=16% Similarity=0.189 Sum_probs=204.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----CCCCeEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCcc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----DHGNALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~~ 78 (334)
+++.+++.+++++++|++++|+|++++.++.++. ++||+|+++.++|+++...+.. ..|.+++.++++ .++.
T Consensus 52 ~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~ 129 (402)
T TIGR02006 52 ARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPK--SNGL 129 (402)
T ss_pred HHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccC--CCCc
Confidence 4555667778888999999999999999887753 6899999999999987766531 459999999874 4557
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|++.+++++++ +++++++++++||||.+.| +++|.++|+++|+++++|++++... ....+. .
T Consensus 130 ~d~~~l~~~l~~------~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~----~~~~~~---~- 192 (402)
T TIGR02006 130 IDLEELKAAIRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGK----IPINVN---E- 192 (402)
T ss_pred CCHHHHHHhcCC------CCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCC----cccCcc---c-
Confidence 899999999875 7899999999999999999 8899999999999999999987522 222221 1
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh---------hcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL---------TRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.+.++++.|.+|.+|.+| +|+++.+++.. ..+... ...++.+.....++...++. +.+.++
T Consensus 193 ----~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~-~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~ 262 (402)
T TIGR02006 193 ----LKVDLMSISGHKIYGPKG--IGALYVRRKPR-VRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI---AKEEMA 262 (402)
T ss_pred ----cCCCEEEEehhhhcCCCc--eEEEEEccCCC-CCCCceecCCCccCCccCCCccHHHHHHHHHHHHH---HHHhHH
Confidence 456788889999877445 78887743222 222111 11234455555556555543 234456
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC---
Q 019899 230 TNKRRIKKLYDSFVAGLKQL-GIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--- 302 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--- 302 (334)
...++.++.++++.+.|+++ ++.+..+. .+..+.+.++.. +..++... + .+|.+..|..|.+.
T Consensus 263 ~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~-------~~~~~~~~-l--~~i~v~~G~~c~~~~~~ 332 (402)
T TIGR02006 263 QDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYV-------EGESLIMA-L--KDLAVSSGSACTSASLE 332 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCc-------CHHHHHHh-c--CCEEEechhhcCCCCCC
Confidence 67788889999999999875 45543221 111111333321 12344433 2 58888888777542
Q ss_pred --------------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 --------------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 --------------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+.+|+|+++ .|++|++++++.|+++++++
T Consensus 333 ~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 333 PSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred ccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13689999996 69999999999999988654
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=200.93 Aligned_cols=295 Identities=14% Similarity=0.112 Sum_probs=207.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+.+.+++.++ .+..++++++++++..++..+.. +||.|+.+...|.+....+. ..|.+++.++. .|++
T Consensus 95 le~~la~~~g--~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~-~~g~~~~~~~~-------~d~~ 164 (406)
T PRK13393 95 LEAELADLHG--KEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIR-HSRAEKRIFRH-------NDPA 164 (406)
T ss_pred HHHHHHHHhC--CCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHH-HcCCeEEEeCC-------CCHH
Confidence 4445555454 35667777777899999987754 78888888888888888888 77888777763 3678
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
.+++.++... ..++++|++++++|++|.+.| +++|.++|+++++++++||+|+...++..+ ..+.... +..
T Consensus 165 ~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G-~g~~~~~---~~~ 235 (406)
T PRK13393 165 DLERKLSDLD--PHRPKLVAFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRG-GGIAERE---GLA 235 (406)
T ss_pred HHHHHHHhcc--CCCCEEEEEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCC-Cchhhhc---CCC
Confidence 8888776421 125788899999999999999 999999999999999999999855543221 1111111 111
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
...+++++|+||.+|++| ||+++ ++++.+.+...... .+.++..+.++.+.++.. ++. ...+.++.++
T Consensus 236 ~~~~i~~~tlsKa~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~~~-~~~~~~~~~~ 307 (406)
T PRK13393 236 DRLTIIEGTLAKAFGVMG---GYITG-SAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHL---KAS-SAERERHQDR 307 (406)
T ss_pred CCCeEEEEeCchhhcccC---ceeeC-CHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHH---hhC-HHHHHHHHHH
Confidence 334677899999998777 89987 88888888765433 234555566666665432 222 1224567788
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~ 316 (334)
.+++.+.|++.|+++..+.++++. +.++.. .+..++.+.|++++||.+.++.+.... ..+++|++++. .++
T Consensus 308 ~~~l~~~L~~~g~~~~~~~~~i~~-v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~ 380 (406)
T PRK13393 308 VARLRARLDKAGIPHLPNPSHIVP-VMVGDP------VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTD 380 (406)
T ss_pred HHHHHHHHHHcCCCcCCCCCCeEE-EEeCCH------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCH
Confidence 899999998888877666665543 333321 234678888777679999886543221 34689999985 699
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+|++++++.|++++++.
T Consensus 381 edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 381 ADIEHLVQALSEIWARL 397 (406)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988653
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-25 Score=195.63 Aligned_cols=280 Identities=17% Similarity=0.224 Sum_probs=195.2
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.+.+++..+.+ ..++++|+++++.+++ .++++||+|+++.|.|++.... +. ..|.+++.++. .|
T Consensus 57 le~~la~l~g~~--~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~-~~G~~v~~vd~-------~d 125 (366)
T PRK08247 57 LEQAIADLEGGD--QGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWK-KWNVRFVYVNT-------AS 125 (366)
T ss_pred HHHHHHHHhCCC--cEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhh-ccCceEEEECC-------CC
Confidence 455555555543 4578888899999876 5778999999999999985443 34 58999988874 37
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||+|...+ +++|+++|+++|+++|+|++|...... .++ .
T Consensus 126 ~~~l~~~i~~------~tklv~le~P~NP~~~~~d---l~~I~~la~~~g~~lIvD~t~~~~~~~----~p~----~--- 185 (366)
T PRK08247 126 LKAIEQAITP------NTKAIFIETPTNPLMQETD---IAAIAKIAKKHGLLLIVDNTFYTPVLQ----RPL----E--- 185 (366)
T ss_pred HHHHHHhccc------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCcccccc----Cch----h---
Confidence 8999998876 7899999999999876555 999999999999999999998532211 111 1
Q ss_pred cCCCcEEEEecccccCCC-CCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSL-PGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~-~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.+++++|+||.++. ++++.|+++++++++.+.+...+.. ...++..+..+...++.. ..+.++.++
T Consensus 186 --~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl-------~~r~~~~~~ 256 (366)
T PRK08247 186 --EGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTL-------ALRMRQHEE 256 (366)
T ss_pred --cCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcH-------HHHHHHHHH
Confidence 4667999999999963 3578999998557788877655443 345666666666655432 233445688
Q ss_pred HHHHHHHHHHhC-CCcc--cCCCceeEEeeecCCcCCCCChhhHHHHHHH---------HHHhcCeEEcCCCCcCCC---
Q 019899 238 LYDSFVAGLKQL-GIRC--SESSAGLYCWADMSGLIPSYSEKGELELWDK---------LLNIAKINVTPGSACHCI--- 302 (334)
Q Consensus 238 ~~~~~~~~l~~~-g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------ll~~~gi~v~~g~~~~~~--- 302 (334)
+++.+.+.|+++ ++.. .++.+|++.| ++... .....+.+. |.....+.+.|+..++..
T Consensus 257 ~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~------~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~ 329 (366)
T PRK08247 257 NAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDE------EWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPE 329 (366)
T ss_pred HHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCH------HHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCH
Confidence 889999999987 5653 3336888776 55321 111122222 112334556676554321
Q ss_pred --------CCCeEEEEecCCCcccHHHHHHHHHHHHHHcC
Q 019899 303 --------EPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 303 --------~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
.++-+|+|++ -|+.+.+++.|.+++++.+
T Consensus 330 ~~r~~~gi~~~~~R~svG---lE~~~dl~~dl~~al~~~~ 366 (366)
T PRK08247 330 EIRIANGVCNRLLRFSVG---IENVEDLIADLKQAFKQVK 366 (366)
T ss_pred HHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhhcC
Confidence 2357999999 7788899999999987643
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=204.92 Aligned_cols=288 Identities=18% Similarity=0.220 Sum_probs=198.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----CCCCeEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCcc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----DHGNALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~~ 78 (334)
+++.+++.++++++++++++|+|+++++++.++. ++||+|+++.++|+++...+.. ..|.+++.++++ .++.
T Consensus 54 ~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~--~~g~ 131 (404)
T PRK14012 54 ARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQ--SNGI 131 (404)
T ss_pred HHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccC--CCCc
Confidence 4556677788888899999999999999887763 7899999999999888665541 359999999874 4557
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|++++++++++ +++++++++++||||.+.| +++|.++|+++|+++++|++++. +....++..
T Consensus 132 ~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~----g~~~~~~~~---- 194 (404)
T PRK14012 132 IDLEKLEAAMRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSV----GKVPIDLSK---- 194 (404)
T ss_pred CCHHHHHHhcCC------CCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhc----CCcccCccc----
Confidence 899999999976 7899999999999999999 89999999999999999999875 222222221
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh---------hcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL---------TRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.+.++++.|++|.+| ++ ++|+++.+++.. ..+... ...++.+.....++..++.. ......
T Consensus 195 ----~~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~-~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~~~ 264 (404)
T PRK14012 195 ----LKVDLMSFSAHKIYG-PK-GIGALYVRRKPR-VRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARI---AKEEMA 264 (404)
T ss_pred ----CCCCEEEEehhhccC-CC-ceEEEEEecCCC-CCCCceecCCCccCCccCCCcCHHHHHHHHHHHHH---HHhhHH
Confidence 345677789999776 43 588888744322 122111 01122233333333333322 122334
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCcccCC-----CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-
Q 019899 230 TNKRRIKKLYDSFVAGLKQL-GIRCSES-----SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI- 302 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~-g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~- 302 (334)
+..++.++.++++.+.|++. ++.+..+ ...+.+++.... ..++... ++ ++.+.+|..|.+.
T Consensus 265 ~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-l~--~~~i~~g~~~~~~~ 332 (404)
T PRK14012 265 TENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE---------GESLIMA-LK--DLAVSSGSACTSAS 332 (404)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC---------HHHHHHh-CC--CeEEEchhhhCCCC
Confidence 55677778888888888765 4443321 123344554432 1345444 33 6777777655331
Q ss_pred ----------------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 ----------------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 ----------------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+.+|+++++ .+++|++++++.|+++++.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 333 LEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred CCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13679999996 69999999999999988764
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-25 Score=199.86 Aligned_cols=292 Identities=12% Similarity=0.070 Sum_probs=197.6
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh-----hhhccCcEEEEEeCCCCCCccccHH
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD-----IRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~-----~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
.+++.++++..+|++++ +++++..++.+++++||+|+++.|+|.++... +. ..|.+++.++++. +++.+|++
T Consensus 79 ~la~~~g~~~~~i~~~s-gt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~d~~ 155 (416)
T PRK00011 79 RAKELFGAEYANVQPHS-GSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFS-GKLYNVVSYGVDE-ETGLIDYD 155 (416)
T ss_pred HHHHHhCCCceeeecCC-chHHHHHHHHHhcCCCCEEEEeccccCCccccccccccc-cceeeEeecCcCc-ccCCcCHH
Confidence 34555666666666655 57799999999999999999999999865322 12 3467888888742 34789999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhcccc
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~ 161 (334)
++++++++. ++++++++.+++ |...| +++|.++|+++|+++|+|++|.... +.+.....+
T Consensus 156 ~l~~~i~~~-----~~k~v~~~~~~~--~~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~--------- 216 (416)
T PRK00011 156 EVEKLALEH-----KPKLIIAGASAY--SRPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPV--------- 216 (416)
T ss_pred HHHHHHHhc-----CCCEEEECCCcC--CCccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCC---------
Confidence 999999752 688888775554 45566 8999999999999999999986422 211111111
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCC---hHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSIS---APTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+.++++.|+||++ +|.|.||++++++++.+.++.....+..+ ...+.++..++. +...+.+.++.+++.++
T Consensus 217 -~~~di~~~S~~K~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~--~~~~~~~~~~~~~~~~~ 291 (416)
T PRK00011 217 -PHADVVTTTTHKTL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFK--EALEPEFKEYAQQVVKN 291 (416)
T ss_pred -CCCcEEEecCCcCC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHH--HHHhhhHHHHHHHHHHH
Confidence 13357789999977 67788999996678888887655443221 222222222221 12233457778889999
Q ss_pred HHHHHHHHHhCCCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCC-CcC---CCCCCeEEEEec-
Q 019899 239 YDSFVAGLKQLGIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS-ACH---CIEPGWFRCCFT- 312 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~-~~~---~~~~~~iRi~~~- 312 (334)
++++.+.|++.|+++.. ...++++|+.+++.. .+..++... ++++||.+..+. .+. +..+..+|++..
T Consensus 292 ~~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~-L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~ 365 (416)
T PRK00011 292 AKALAEALAERGFRVVSGGTDNHLVLVDLRSKG-----LTGKEAEAA-LEEANITVNKNAVPFDPRSPFVTSGIRIGTPA 365 (416)
T ss_pred HHHHHHHHHhCCCeeeecCCCCeEEEEeCcccC-----CCHHHHHHH-HHHcCcEEccCcCCCCCCCCCCCCceEecCHH
Confidence 99999999998887653 223477888885321 123456665 667899997432 111 112456899652
Q ss_pred ----CCCcccHHHHHHHHHHHHHH
Q 019899 313 ----SLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 313 ----~~~~~~l~~~l~~l~~~~~~ 332 (334)
..+++|++.+++.|++++..
T Consensus 366 ~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 366 ITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred HhhcCcCHHHHHHHHHHHHHHHhc
Confidence 25789999999999998764
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-25 Score=190.95 Aligned_cols=291 Identities=19% Similarity=0.199 Sum_probs=215.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
|.+.++++++ .+..++.+++..++..++.+|++++|.|+.+...|.+..+.++ ..+++++.+. +.|++.|
T Consensus 89 LE~~lA~f~g--~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~r-ls~a~~~~f~-------HnD~~~L 158 (388)
T COG0156 89 LEEELADFLG--AEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIR-LSRAEVRRFK-------HNDLDHL 158 (388)
T ss_pred HHHHHHHHhC--CCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHH-hCCCcEEEec-------CCCHHHH
Confidence 3344454443 5678888888889999999999999999999999999999999 9999999988 4689999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC--CcchhhhhhhccccC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE--EFVSMAEILEAEEVD 162 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~~~~~~~~~~ 162 (334)
++.+++.+..+.+.+.|+....-...|.+.| +++|++++++|+.++++||+|+...++.. +......+.+
T Consensus 159 e~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~----- 230 (388)
T COG0156 159 EALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEP----- 230 (388)
T ss_pred HHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCC-----
Confidence 9999986533324565666666789999999 99999999999999999999999888643 3333333322
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
...++.++|++|++|..| ||+.+ +..+.+.++....+ |+ .+|....++...++. +. ....++++++++
T Consensus 231 ~~vdi~~gTlsKAlGs~G---g~v~g-~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~---l~-~~~~~r~~L~~~ 302 (388)
T COG0156 231 EEVDIIVGTLGKALGSSG---GYIAG-SAALIDYLRNRARPFIFSTALPPAVAAAALAALRI---LE-EGPERRERLQEL 302 (388)
T ss_pred ccceEEEEEchhhhcccC---ceeeC-cHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHH---HH-hCHHHHHHHHHH
Confidence 455899999999999777 88887 99999999876444 32 233333334444432 22 235677888899
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~ 316 (334)
..++.+.+...++.+.....+.. .+.+... ..+.++...|+++ ||.+.+..+.... ....+|++++. .|+
T Consensus 303 ~~~~~~~~~~~~~~~~~s~s~I~-pv~~gd~------~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~ 374 (388)
T COG0156 303 AAFFRSLLKALGLVLLPSESPII-PVILGDE------ERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTE 374 (388)
T ss_pred HHHHHHHHHhcCCccCCCCCCee-eeEeCCH------HHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCH
Confidence 99999888777887755544443 2333321 2356788887776 9999876543332 34789999986 699
Q ss_pred ccHHHHHHHHHHH
Q 019899 317 EDIPLVIERIQKV 329 (334)
Q Consensus 317 ~~l~~~l~~l~~~ 329 (334)
+||+.+++.+.++
T Consensus 375 ~~I~~l~~~l~~~ 387 (388)
T COG0156 375 EDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=192.22 Aligned_cols=279 Identities=16% Similarity=0.184 Sum_probs=188.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh----hhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI----RFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.++...+ .+++++++|+++|+..++.+++++||+|+++.|.|+.+.... + ..|.+++.++. .|
T Consensus 69 Le~~iA~~~g--~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~-~~G~~v~~vd~-------~d 138 (400)
T PRK06234 69 VENKLALLEG--GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLT-RYGVEVTFVDT-------SN 138 (400)
T ss_pred HHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHh-hCCeEEEEECC-------CC
Confidence 4445554444 357899999999999999999999999999999998766543 4 68999999885 27
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK--NIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
++++++++++ ++++|++++|+||||.+.| +++|.++|+++ |+++++|++|+...+. .++ .
T Consensus 139 ~e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~----~~l----~- 200 (400)
T PRK06234 139 LEEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ----RPL----Q- 200 (400)
T ss_pred HHHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC----Cch----h-
Confidence 8999999976 7899999999999999999 88899999986 9999999999864432 111 1
Q ss_pred cccCCCcEEEEecccccCCCCCceE-EEEeecCHHHHHHHHHh--hcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVLAAAKKL--TRF--CSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
.+.+++++|++|.++.+|.++ ||+++ ++++.+.++.. ... ...++.....+..-++.. ..+.+
T Consensus 201 ----~g~Divv~S~sK~l~g~g~~~gG~v~~-~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl-------~~r~~ 268 (400)
T PRK06234 201 ----LGADVVVHSATKYLNGHGDVIAGFVVG-KEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL-------QIRME 268 (400)
T ss_pred ----hCCcEEEeeccccccCCCCceeEEEEe-cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH-------HHHHH
Confidence 356789999999998788664 99888 77787777643 212 233444444344444332 23334
Q ss_pred HHHHHHHHHHHHHHhCC-Cc---ccC--------------CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 234 RIKKLYDSFVAGLKQLG-IR---CSE--------------SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~g-~~---~~~--------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
+..+++..+.+.|+++. +. +.. ...|-++.+++... .+....+.+. ++-.++...-
T Consensus 269 ~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~-----~~~~~~f~~~-l~~~~~~~s~ 342 (400)
T PRK06234 269 KHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG-----VEEGKVVMNN-VKLATLAVSL 342 (400)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc-----HHHHHHHHHh-CCcceEeccC
Confidence 45567777777777652 11 100 01233445676532 1223455555 4445554443
Q ss_pred CCCcCC---------------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 296 GSACHC---------------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 296 g~~~~~---------------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
|..... ..++-+|+|++ -|+.+.+++.|.+++++
T Consensus 343 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG---lE~~~dl~~dl~~al~~ 397 (400)
T PRK06234 343 GDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVG---LEDVDDIIADLKQALDL 397 (400)
T ss_pred CCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeC---CCCHHHHHHHHHHHHHH
Confidence 432211 02357999999 67788888888888764
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=197.80 Aligned_cols=281 Identities=17% Similarity=0.133 Sum_probs=188.4
Q ss_pred hhcCCCCCCCCcEEEecCcH-HHHHHHHHHhcCC--CCeEEecCCCCCChhhhhhhccC----cEEEEEeCCCCCCcccc
Q 019899 8 VLGQAVSFDPSQIVLTAGAT-PAVEILCFCLADH--GNALLVPSPYYPGFDRDIRFRTG----VELIPVHCRSTDNFAFS 80 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~-~~~~~~~~~l~~~--gd~vl~~~p~~~~~~~~~~~~~g----~~v~~v~~~~~~~~~~~ 80 (334)
.+++.++++.++++++++++ ++...++.++..+ ||+|++++|.|+++...+. ..| .+++.+++. +++.+|
T Consensus 72 ~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~-~~~~~~g~~~~~v~~~--~~~~~d 148 (398)
T cd00613 72 MLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVAR-TRGEPLGIEVVEVPSD--EGGTVD 148 (398)
T ss_pred HHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHH-HhcccCCcEEEEeccC--CCCCcC
Confidence 33344455666777777555 4555555566665 9999999999999988887 666 899998873 345789
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+ |+|.+.+ .+++|.++|+++|+++|+|++++.... .... ..
T Consensus 149 ~~~l~~~i~~------~t~~viv~~~~-~~G~~~~--~l~~i~~la~~~g~~livD~~~~~~~~----~~~~---~~--- 209 (398)
T cd00613 149 LEALKEEVSE------EVAALMVQYPN-TLGVFED--LIKEIADIAHSAGALVYVDGDNLNLTG----LKPP---GE--- 209 (398)
T ss_pred HHHHHHhcCC------CeEEEEEECCC-CCceecc--hHHHHHHHHHhcCCEEEEEeccccccC----CCCh---HH---
Confidence 9999998865 78999999885 8999954 459999999999999999998754221 1111 11
Q ss_pred cCCCcEEEEecccccCCCC----CceEEEEeecCHHHHHHHHHh-------------------------------hcccC
Q 019899 161 VDKDRVHIIYGLSKDLSLP----GFRTGVIYSYNESVLAAAKKL-------------------------------TRFCS 205 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~----g~r~g~i~~~~~~~~~~~~~~-------------------------------~~~~~ 205 (334)
.+.++++.|++|++ ++ |.+.|+++. ++++.+.+... ...++
T Consensus 210 --~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~ 285 (398)
T cd00613 210 --YGADIVVGNLQKTG-VPHGGGGPGAGFFAV-KKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICT 285 (398)
T ss_pred --cCCCEEEeeccccC-CCCCCCCCceeEEEE-hhhhHhhCCCCeeccccccCCCcceEEecccchhhccccccccccee
Confidence 46678899999998 45 688999998 66666654110 00111
Q ss_pred CChHH-HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeE--EeeecCCcCCCCChhhHHHHH
Q 019899 206 ISAPT-QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLY--CWADMSGLIPSYSEKGELELW 282 (334)
Q Consensus 206 ~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~ 282 (334)
.++.. +.+...+.... .+.+.+.++++.++++++.+.|++++... .+.+.++ ++++++... ..+..+++
T Consensus 286 ~~~~~~~~a~~~l~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~~~~~ 357 (398)
T cd00613 286 GQALLALMAAMYIVYLG---PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLY----GIRAEDLA 357 (398)
T ss_pred cHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcc----hHHHHHHH
Confidence 12222 22222222111 33456778899999999999999876543 2222322 456665420 12456788
Q ss_pred HHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHH
Q 019899 283 DKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERI 326 (334)
Q Consensus 283 ~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l 326 (334)
..|+ ++||.+.+.. +..++.+|++++. .+++|++++++.|
T Consensus 358 ~~L~-~~gi~~~~~~---~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 358 KALI-DGGFHAPTMY---LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred Hhhh-hcCccccccc---cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 8855 4798764322 2235789999985 6999999998864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=198.48 Aligned_cols=277 Identities=17% Similarity=0.199 Sum_probs=197.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCcc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~~ 78 (334)
+++.+++.+++++++|++++|+|++++.++..+ .++||+|+++...|+++...+.. ..|.+++.+++. +++.
T Consensus 48 ~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~ 125 (364)
T PLN02651 48 ARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK--SDGL 125 (364)
T ss_pred HHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC--CCCc
Confidence 455566777788899999999999988887654 46899999999888876554431 468899999873 4567
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|++++++++++ +++++++++++|+||.+.| +++|.++|+++|+++++|.+++. +.....+. .
T Consensus 126 ~d~~~l~~~i~~------~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~----g~~~~~~~---~- 188 (364)
T PLN02651 126 VDLDELAAAIRP------DTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAV----GKIPVDVD---D- 188 (364)
T ss_pred CCHHHHHHhcCC------CcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhh----CCcccCcc---c-
Confidence 899999999976 7899999999999999999 89999999999999999999875 22222221 1
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh---------hcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL---------TRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.+.++++.|.+|++|. ..+|+++. +++....+... ...++.+.....++..+++.. .+..+
T Consensus 189 ----~~~D~~~~s~hK~~gp--~G~g~l~v-~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~---~~~~~ 258 (364)
T PLN02651 189 ----LGVDLMSISGHKIYGP--KGVGALYV-RRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELA---MKEMD 258 (364)
T ss_pred ----CCCCEEEechhhhCCC--CceEEEEE-cCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHH---HHhHH
Confidence 5678899999996553 34788887 44333333211 123455656666666666432 33346
Q ss_pred HHHHHHHHHHHHHHHHHHh-C-CCcccCCCc-----eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQ-L-GIRCSESSA-----GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~-~-g~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
+..++.++..+++.+.|++ . ++++..+.. ...+.+.+++. +..++... |++ |.+..|+.|...
T Consensus 259 ~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~-L~~--i~v~~g~~c~~~ 328 (364)
T PLN02651 259 YDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV-------EGESLLMG-LKE--VAVSSGSACTSA 328 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC-------CHHHHHHH-hCC--EEEEchhhcCCC
Confidence 6778888888999998875 3 777765411 22344555532 34577777 453 999988877543
Q ss_pred -----------------CCCeEEEEecC-CCcccHH
Q 019899 303 -----------------EPGWFRCCFTS-LTHEDIP 320 (334)
Q Consensus 303 -----------------~~~~iRi~~~~-~~~~~l~ 320 (334)
..+.+|+|++. .|++|++
T Consensus 329 ~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 329 SLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 13689999996 5777764
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=200.78 Aligned_cols=280 Identities=17% Similarity=0.177 Sum_probs=196.4
Q ss_pred cCCCCCCCCcEEEecCcHHHHHHHHHHhc-CCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHH
Q 019899 10 GQAVSFDPSQIVLTAGATPAVEILCFCLA-DHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 10 ~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
++.++++.+++++++|+++++..++.++. .+||+|+++.+.|+++...++. ..|.+++.++++ .+ .+|+++++
T Consensus 122 a~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~--~~-~~d~~~l~ 198 (447)
T PRK00451 122 CELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYE--DG-VTDLEALE 198 (447)
T ss_pred HHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCC--CC-CCCHHHHH
Confidence 44456778899999999999999988874 7899999999999998887662 268999999974 34 79999999
Q ss_pred HHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEE--eccccccccCCCCcchhhhhhhccccCC
Q 019899 86 QAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVIS--DEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++ ++++|++++| ||||.+.+ +++|.++|+++|+++++ |.+... .+ ... . +.
T Consensus 199 ~~i~~------~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g-~~-----~~~---~-----~~ 254 (447)
T PRK00451 199 AAVDD------DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLG-LL-----KPP---G-----EY 254 (447)
T ss_pred HhcCC------CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhc-cC-----CCc---c-----cC
Confidence 99975 7899999999 89999988 99999999999999998 433211 00 000 1 14
Q ss_pred CcEEEEe---cccccCCCCCceEEEEeecCHHHHHHHH----------------------------HhhcccCCC--hHH
Q 019899 164 DRVHIIY---GLSKDLSLPGFRTGVIYSYNESVLAAAK----------------------------KLTRFCSIS--APT 210 (334)
Q Consensus 164 ~~~~~~~---s~sK~~~~~g~r~g~i~~~~~~~~~~~~----------------------------~~~~~~~~~--~~~ 210 (334)
+.++++. +++|.+++.|.++||+++ ++++.+.+. +.....+.. ...
T Consensus 255 ~~D~~~~s~~k~~~~~~~~Gpg~G~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (447)
T PRK00451 255 GADIVVGEGQPLGIPLSFGGPYLGFFAT-RKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQAL 333 (447)
T ss_pred CCCEEEECCCcCCCCCCCCCCCchHHHh-hHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHH
Confidence 5566666 566667677889999998 677766631 111111111 112
Q ss_pred H-HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEe--eecCCcCCCCChhhHHHHHHHHH
Q 019899 211 Q-RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCW--ADMSGLIPSYSEKGELELWDKLL 286 (334)
Q Consensus 211 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~ll 286 (334)
+ .+++.+++.. .++.+++..+++.++++++.+.|++. |+++. .++++.+ ++++. +..++.++|+
T Consensus 334 ~~~aaa~~l~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~~--------~~~~~~~~L~ 401 (447)
T PRK00451 334 NALAAAIYMSLL--GPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLPK--------PAEEVNEALL 401 (447)
T ss_pred HHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecCC--------CHHHHHHHHH
Confidence 2 2222222211 13446778889999999999999987 57765 3344433 44431 2368888966
Q ss_pred HhcCeEE-cCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 287 NIAKINV-TPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 287 ~~~gi~v-~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+ +||.+ .++..+++..++++|++++. .++++++++++.|++++
T Consensus 402 ~-~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 402 E-KGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred h-cCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 6 56653 34555544345789999985 69999999999998865
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=198.12 Aligned_cols=300 Identities=17% Similarity=0.144 Sum_probs=197.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC------------cEEEEEe
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG------------VELIPVH 70 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~ 70 (334)
+.+.+.+.++.+.+++++++|+++|+..++..+. .++++|++.+++|.+.........+ .+++.+|
T Consensus 84 l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (413)
T cd00610 84 LAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVP 163 (413)
T ss_pred HHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeC
Confidence 3344444455568899999999999999998873 5789999999999886544331222 2355665
Q ss_pred CCCC----CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccC
Q 019899 71 CRST----DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFG 145 (334)
Q Consensus 71 ~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~ 145 (334)
.++. ..+..|++.+++.+++. ..+++++++...++++|.+. +.+.+++|.++|++||+++|+||+|+++...
T Consensus 164 ~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~ 240 (413)
T cd00610 164 YPYRYRPPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRT 240 (413)
T ss_pred CCccccchhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 4211 12445888898888642 12456455444477889877 6667999999999999999999999876443
Q ss_pred CCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHH--HHh--hcccCCChHHHHHHHHhhCCh
Q 019899 146 NEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAA--KKL--TRFCSISAPTQRLLISMLSDT 221 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~ 221 (334)
+... .. .. .+....+.|+||+++ .|+|+||+++ ++++.+.+ ... ...++.+++.+.++.+.++..
T Consensus 241 g~~~-~~-~~-------~~~~~d~~t~sK~l~-~g~~~g~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l 309 (413)
T cd00610 241 GKMF-AF-EH-------FGVEPDIVTLGKGLG-GGLPLGAVLG-REEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL 309 (413)
T ss_pred cchh-hH-hh-------cCCCCCeEEEccccc-CccccEEEEE-cHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 3211 11 11 111112458899998 5899999998 78888886 222 234566777777776666432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cc--cCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcC
Q 019899 222 KFIQEYLETNKRRIKKLYDSFVAGLKQLGI--RC--SESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~--~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
++ ....++++++.+++.+.|++... .. .....|.++++.++..... ........+...|+ ++||.+.|
T Consensus 310 ---~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~ 383 (413)
T cd00610 310 ---EE--EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRP 383 (413)
T ss_pred ---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEee
Confidence 11 23455666667777777765421 21 1233567777877643110 01123456777755 57999998
Q ss_pred CCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 296 GSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+. .+.+|++++. .++++++++++++.+++
T Consensus 384 ~~------~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 384 SG------GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred cC------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 75 4679999885 58999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=192.00 Aligned_cols=270 Identities=16% Similarity=0.201 Sum_probs=183.1
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCC---------------eEEecCCCCCChh----hhhhhccCcEEEEEeCCCCCCc
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGN---------------ALLVPSPYYPGFD----RDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd---------------~vl~~~p~~~~~~----~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
.+++++|+|+|+|+++++.+++++|| +|+++.|.|..+. ..+. ..|.+++.++. .+
T Consensus 60 ~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~-~~g~~~v~v~~----~~ 134 (363)
T TIGR01437 60 VEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVR-LGGGKVVEAGY----AN 134 (363)
T ss_pred CCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHH-hcCCeEEEEcC----CC
Confidence 45899999999999999999999998 8999998887663 4455 78999999985 23
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEE-EeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGIL-ICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~-~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
.+|++++++++++ ++++++ +++|+||+|.+.| +++|.++|++||+++++|++|+. .+....
T Consensus 135 ~~d~~~le~ai~~------~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~---------~~~~~~ 196 (363)
T TIGR01437 135 ECSAEQLEAAITE------KTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE---------DLQKYY 196 (363)
T ss_pred CCCHHHHHHhcCh------hceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC---------chHHHH
Confidence 6999999999987 778766 5677999999999 88899999999999999999862 111111
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
. .+.++++.|+||++ +|.+.|+++. ++++++.++..... +........++..++.. +.++..+..
T Consensus 197 ~-----~g~D~~~~S~~K~l--~gp~~G~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~---~~~~~~~~~ 265 (363)
T TIGR01437 197 R-----LGADLVIYSGAKAI--EGPTSGLVLG-KKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQ---YLSTGKESG 265 (363)
T ss_pred H-----cCCCEEEEeCCccc--CCCceEEEEE-cHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHH---HHccCcccH
Confidence 1 34567889999987 5667999997 77777766432221 11112222233333221 111112233
Q ss_pred HHHHHHHHHHHHHHHhC-CCcccCC--Ccee-----EEeeecCCcCCCCChhhHHHHHHHHHHhcC--eEEcCCCCcCCC
Q 019899 233 RRIKKLYDSFVAGLKQL-GIRCSES--SAGL-----YCWADMSGLIPSYSEKGELELWDKLLNIAK--INVTPGSACHCI 302 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~-g~~~~~~--~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g--i~v~~g~~~~~~ 302 (334)
+...++++.+.+.|++. |+.+..+ ..+. .+.++... ...+..++.+. |++.+ |.+++ ++.
T Consensus 266 ~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~-----~g~~~~~l~~~-L~~~~~~I~~r~--~~~-- 335 (363)
T TIGR01437 266 AEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESE-----LGMTAADVVQA-LRQGEPAIYTRG--YKA-- 335 (363)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC-----CCCCHHHHHHH-HhcCCCCEEEee--eee--
Confidence 34445677899999887 7776532 1111 11122211 11245688888 55466 66654 232
Q ss_pred CCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 303 EPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 303 ~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
..+.+|+++...+++|++.++++|.+++
T Consensus 336 ~~~~~~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 336 NEGIIEIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred cCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence 3578999988778999999999998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=191.03 Aligned_cols=282 Identities=16% Similarity=0.174 Sum_probs=187.9
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhc---cCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR---TGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~---~g~~v~~v~~~~~~~~~~~ 80 (334)
.+++.++...+ .+++++++|+++|+..++.+++++||+|+++.|+|++....+... .+.++..++ ..|
T Consensus 55 ~le~~lA~l~g--~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d-------~~d 125 (382)
T TIGR02080 55 LLQQALAELEG--GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVD-------QGD 125 (382)
T ss_pred HHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEEC-------CCC
Confidence 34444554443 478999999999999999999999999999999999766654412 245555443 137
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||||.+.| +++|.++|+++|+++++|++|..+... .++ .
T Consensus 126 ~~~l~~ai~~------~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~----~pl-~------ 185 (382)
T TIGR02080 126 EQALRAALAQ------KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQ----NPL-A------ 185 (382)
T ss_pred HHHHHHhcCc------CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch-h------
Confidence 8999999876 7899999999999999999 888999999999999999999753321 111 1
Q ss_pred cCCCcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.+++++|+||.++ .++++.|++++.++++.+.++...... ..++.....+..-++ .+..+.++..+
T Consensus 186 --~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~-------tl~~R~~~~~~ 256 (382)
T TIGR02080 186 --LGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR-------TLVARMRLQQR 256 (382)
T ss_pred --hCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc-------hHHHHHHHHHH
Confidence 234588899999995 568899999887888888887655543 344444433322222 22333556668
Q ss_pred HHHHHHHHHHhCC-Cc---cc----C----------CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 238 LYDSFVAGLKQLG-IR---CS----E----------SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 238 ~~~~~~~~l~~~g-~~---~~----~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
++..+.+.|+.+. ++ +. . ...|-.+.+++... ......+.+. ++-.++.+.-|...
T Consensus 257 na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-----~~~~~~f~~~-l~~~~~~~s~G~~~ 330 (382)
T TIGR02080 257 NAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGG-----EQTVRRFLGG-LSLFTLAESLGGVE 330 (382)
T ss_pred HHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCc-----HHHHHHHHHc-CCcceEeccCCCCc
Confidence 8888888888752 21 11 0 01222455666421 1122334444 33233333223211
Q ss_pred C----------C-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 300 H----------C-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~----------~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
. . ..++-+|+|++ -|+.+++++.|.+++++
T Consensus 331 sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG---lE~~~dl~~dl~~al~~ 381 (382)
T TIGR02080 331 SLIAHPATMTHAAMGPEARAEAGISDTLLRLSVG---LEDADDLIADLEQGLRA 381 (382)
T ss_pred ceeECCCccCcccCCHHHHHhcCCCcCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 0 0 01357999999 77888899999988864
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=197.99 Aligned_cols=277 Identities=16% Similarity=0.184 Sum_probs=195.5
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----CCC-CeEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCC
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----DHG-NALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDN 76 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----~~g-d~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~ 76 (334)
.+++.+++.+++++++|++++|++++++.++.++. .+| +.|+++...|+++...+.. ..|.+++.++++ .+
T Consensus 46 ~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~ 123 (353)
T TIGR03235 46 RARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD--ES 123 (353)
T ss_pred HHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccC--CC
Confidence 34556667777888999999999999999988875 355 7899988888876655431 468999999974 45
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
+.+|++++++++++ +++++++++++||||.+.| +++|.++|+++|+++++|++++.... ..++.
T Consensus 124 ~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~----~~~~~--- 187 (353)
T TIGR03235 124 GRIDVDELADAIRP------DTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQVVGKI----TVDLS--- 187 (353)
T ss_pred CcCCHHHHHHhCCC------CCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhhcCCc----ccccc---
Confidence 67899999998865 7899999999999999999 89999999999999999999875222 12221
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHH--HHHh---------hcccCCChHHHHHHHHhhCChHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAA--AKKL---------TRFCSISAPTQRLLISMLSDTKFIQ 225 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (334)
. .+.++++.|.+|++|++| +|+++. +++.... ++.. ...++.+.....++..+++. +.
T Consensus 188 ~-----~~~D~~~~s~~K~~gp~g--~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~---~~ 256 (353)
T TIGR03235 188 A-----DRIDLISCSGHKIYGPKG--IGALVI-RKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEI---AR 256 (353)
T ss_pred c-----cCCCEEEeehhhcCCCCc--eEEEEE-ccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHH---HH
Confidence 1 466788889999877555 788888 4443211 1110 11234555566666666543 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCce---eEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAG---LYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
+..++..++++++.+++.+.|++.|+++..++.. .++.+.++. .+..++... |++ +|.+.+|..|+..
T Consensus 257 ~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-------~~~~~v~~~-L~~-~i~v~~g~~~~~~ 327 (353)
T TIGR03235 257 RNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDG-------VNSEALIVN-LRA-DAAVSTGSACSSS 327 (353)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCC-------cCHHHHHHH-HhC-CeEEEchhhcCCC
Confidence 3456778899999999999998888887643321 123334342 133566667 564 8999999998764
Q ss_pred C--CCeEEEEecCCCcccH
Q 019899 303 E--PGWFRCCFTSLTHEDI 319 (334)
Q Consensus 303 ~--~~~iRi~~~~~~~~~l 319 (334)
. +.++|.+++ .+++.+
T Consensus 328 ~~~~~~~l~~~g-~~~~~~ 345 (353)
T TIGR03235 328 KYEPSHVLQAMG-LDTDRA 345 (353)
T ss_pred CCCCCHHHHHcC-CCHHHh
Confidence 3 346777877 554443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=188.57 Aligned_cols=208 Identities=17% Similarity=0.194 Sum_probs=157.0
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhc---cCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR---TGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~---~g~~v~~v~~~~~~~~~~~ 80 (334)
.++++++...+ .+++++++|+++++..++.+++++||+|++++|+|++....+... .|.++..++ ..|
T Consensus 56 ~L~~~lA~l~g--~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-------~~d 126 (386)
T PRK08045 56 VVQRALAELEG--GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-------QGD 126 (386)
T ss_pred HHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-------CCC
Confidence 34445554444 357999999999999999999999999999999999755544312 344665554 257
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||||.++| +++|.++|+++|+++++|++|..... ..++ .
T Consensus 127 ~e~l~~~l~~------~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~----~~pl----~--- 186 (386)
T PRK08045 127 EQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPAL----QNPL----A--- 186 (386)
T ss_pred HHHHHHhccc------CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc----CCch----h---
Confidence 8999998875 7899999999999999999 88889999999999999999975322 1111 1
Q ss_pred cCCCcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.+++++|++|+++ .++...|++++.++++.+.++...... ..++..+..+...++. +..+.+++.+
T Consensus 187 --~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-------l~~R~~~~~~ 257 (386)
T PRK08045 187 --LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQR 257 (386)
T ss_pred --hCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-------HHHHHHHHHH
Confidence 344688999999994 566889999886788888776554433 4566777766666655 3456677788
Q ss_pred HHHHHHHHHHhC
Q 019899 238 LYDSFVAGLKQL 249 (334)
Q Consensus 238 ~~~~~~~~l~~~ 249 (334)
++..+.+.|+++
T Consensus 258 na~~la~~L~~~ 269 (386)
T PRK08045 258 NAQAIVKYLQTQ 269 (386)
T ss_pred HHHHHHHHHHcC
Confidence 888888888876
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=185.79 Aligned_cols=208 Identities=15% Similarity=0.174 Sum_probs=147.5
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC----hhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG----FDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~----~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
-+++.++...+.+. .+ +++++++++..++.+++++||+|+++.|.|++ +...++ ..|.++..++..
T Consensus 49 ~L~~~lA~l~g~~~-~v-~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~-~~G~~v~~~~~~------- 118 (376)
T PRK06460 49 ELTKKIVELENAEM-GV-AFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLK-NWGVNVDASNPG------- 118 (376)
T ss_pred HHHHHHHHHhCCCc-EE-EeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHH-hhCcEEEEECCC-------
Confidence 45555666555533 34 44666789999999999999999999877654 334555 689998888752
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
+.+.+++.+++ ++++|++++|+||||.++| +++|.++|+++|+++++|++|+... ....+
T Consensus 119 ~~~~l~~~~~~------~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~~-------~~~~l---- 178 (376)
T PRK06460 119 SDNIIEKAKSK------RYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTPI-------NQKPL---- 178 (376)
T ss_pred CHHHHHHhcCC------CceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCccc-------cCChh----
Confidence 12333333332 7899999999999999999 7788999999999999999987421 11111
Q ss_pred ccCCCcEEEEecccccCCCC-CceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLP-GFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~-g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
+.+.++++.|+||+++.. +.+.||+++ ++++++.+++....++.+... ..+..+++.. +++..+.+++.++
T Consensus 179 --~~~~divv~S~sK~l~G~~~~~~G~~~~-~~~l~~~l~~~~~~~g~~~~~-~~a~~~l~~~----~~l~~r~~~~~~n 250 (376)
T PRK06460 179 --ELGADIVVHSASKFLAGHNDVIAGLAAG-YGKLLNVIDQMRRTLGTSLDP-HAAYLTLRGI----KTLKIRMDVINRN 250 (376)
T ss_pred --hcCCCEEEeecceeccCCCCceEEEEec-CHHHHHHHHHHHHhcCCCCCH-HHHHHHHhch----hhHHHHHHHHHHH
Confidence 145678999999998523 478999998 888989888766655544322 2333333433 3345667778889
Q ss_pred HHHHHHHHHhC
Q 019899 239 YDSFVAGLKQL 249 (334)
Q Consensus 239 ~~~~~~~l~~~ 249 (334)
++++.+.|+++
T Consensus 251 ~~~l~~~L~~~ 261 (376)
T PRK06460 251 AEQIAEFLEGH 261 (376)
T ss_pred HHHHHHHHHcC
Confidence 99999999876
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=192.64 Aligned_cols=274 Identities=15% Similarity=0.191 Sum_probs=191.8
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhh-hhhhccC------------cEEEEEeCCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDR-DIRFRTG------------VELIPVHCRSTD 75 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~-~~~~~~g------------~~v~~v~~~~~~ 75 (334)
.+.+++++++++|+..++.... ...++|+..+.+|.+... .+. ..+ .+++.++
T Consensus 97 ~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----- 170 (403)
T PRK05093 97 AERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVS-VGGQPKYSDGFGPKPADITHVP----- 170 (403)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHh-hcCChhhhhcCCCCCCCcEEeC-----
Confidence 4699999999999999988641 123567777776665432 222 111 1223332
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC--CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII--PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~--~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
..|++.+++.+.+ ++++|++. |.||+|-++ +.+.+++|.++|++||+++|+||+|.++.+.|... +..
T Consensus 171 --~~d~~~l~~~l~~------~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~ 240 (403)
T PRK05093 171 --FNDLAAVKAVIDD------HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF-AYM 240 (403)
T ss_pred --CCCHHHHHHHhcC------CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hhh
Confidence 1278889888864 67766666 877776655 88999999999999999999999999876665422 111
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETN 231 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (334)
.. +..++ +.|+||+++ +|+|+||+++ ++++.+.+... ...++.+++.|.++.+.++... . .+.
T Consensus 241 ~~----~~~pd----i~s~sK~l~-~G~rig~vv~-~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~---~--~~~ 305 (403)
T PRK05093 241 HY----GVTPD----ILTSAKALG-GGFPIGAMLT-TAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN---T--PEV 305 (403)
T ss_pred hc----CCCCC----EEEeccccc-CCcceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---h--ccH
Confidence 11 11122 568999999 9999999999 78888887642 3345678888988888764321 1 234
Q ss_pred HHHHHHHHHHHHHHHHhCCCc----ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 232 KRRIKKLYDSFVAGLKQLGIR----CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~g~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
.++++++.+++.+.|++.+.. ...+..|+++|+.++.... .+..+++..+++ +||.+.|+. ++++
T Consensus 306 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~~~~~l~~-~Gv~v~~~g------~~~l 374 (403)
T PRK05093 306 LEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYK----GRARDFLNAAAE-EGVMVLVAG------PDVL 374 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcch----hHHHHHHHHHHH-CCeEEecCC------CCEE
Confidence 567888888888888876322 1233568889998865321 134578888666 799998742 4689
Q ss_pred EEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 308 RCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 308 Ri~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
|++++. .+++++++++++|.+++++
T Consensus 375 Rl~~~~~~~~~~i~~~~~~l~~~l~~ 400 (403)
T PRK05093 375 RFAPSLVIEEADIDEGLARFEKAVAK 400 (403)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 998775 5999999999999998865
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=186.17 Aligned_cols=208 Identities=15% Similarity=0.199 Sum_probs=155.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+.++++...+ .++.++++++++|+..++.+++++||+|+++.++|.+....+. ...|.++..++.. |+
T Consensus 45 le~~la~l~g--~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~ 115 (369)
T cd00614 45 LEKKLAALEG--GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD-------DP 115 (369)
T ss_pred HHHHHHHHHC--CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC-------CH
Confidence 3444444333 3578888999999999999999999999999999998765432 1568888888742 58
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++.+|+||+|.+.| +++|+++|+++|+++++|++|+...+. ..+ .
T Consensus 116 ~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~-------~~~-~---- 174 (369)
T cd00614 116 EALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ-------RPL-E---- 174 (369)
T ss_pred HHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC-------Chh-h----
Confidence 889888875 7899999999999999999 899999999999999999998753321 111 1
Q ss_pred CCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+.++++.|++|.++.+| .+.|+++++++++.+.++..... ...++....++...++. +..+.++..++
T Consensus 175 -~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-------l~~r~~~~~~n 246 (369)
T cd00614 175 -LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT-------LPLRMERHSEN 246 (369)
T ss_pred -hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-------HHHHHHHHHHH
Confidence 456788999999997565 78999998554888888765543 33455554444444433 23345667788
Q ss_pred HHHHHHHHHhCC
Q 019899 239 YDSFVAGLKQLG 250 (334)
Q Consensus 239 ~~~~~~~l~~~g 250 (334)
++++.+.|++++
T Consensus 247 a~~la~~L~~~~ 258 (369)
T cd00614 247 ALKVAEFLEKHP 258 (369)
T ss_pred HHHHHHHHHcCC
Confidence 888888888874
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=188.01 Aligned_cols=207 Identities=18% Similarity=0.162 Sum_probs=152.5
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
.+.++++...+. ++.++++++++++..++.+++++||+|+++.|+|++... .+. ..|.+++.++. .
T Consensus 64 ~Le~~lA~l~g~--~~~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~-~~g~~v~~v~~-------~ 133 (405)
T PRK08776 64 LLGEALAELEGG--AGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAK-KGHFALITADL-------T 133 (405)
T ss_pred HHHHHHHHHhCC--CceEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHH-hcCcEEEEECC-------C
Confidence 455556555543 344566666899999999999999999999999997433 333 46788888774 3
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.... ...++ .
T Consensus 134 d~~~l~~~i~~------~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~----~~~pl----~-- 194 (405)
T PRK08776 134 DPRSLADALAQ------SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPA----LQKPL----E-- 194 (405)
T ss_pred CHHHHHHhcCc------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccc----cCCcc----c--
Confidence 78889988875 7899999999999999988 9999999999999999999997421 11111 1
Q ss_pred ccCCCcEEEEecccccCCCC-CceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLP-GFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~-g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
.+.++++.|++|.++.+ ++..|+++++++++.+++...... ...++.....+...+ +++..+.++..
T Consensus 195 ---~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl-------~tl~~r~~~~~ 264 (405)
T PRK08776 195 ---FGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL-------RTLDARLRVHQ 264 (405)
T ss_pred ---ccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------CcHHHHHHHHH
Confidence 34458889999999644 577899888778888877654433 234555555444333 23455677788
Q ss_pred HHHHHHHHHHHhC
Q 019899 237 KLYDSFVAGLKQL 249 (334)
Q Consensus 237 ~~~~~~~~~l~~~ 249 (334)
+++..+.+.|+++
T Consensus 265 ~na~~la~~L~~~ 277 (405)
T PRK08776 265 ENADAIAALLDGH 277 (405)
T ss_pred HHHHHHHHHHHcC
Confidence 8888888888876
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-24 Score=191.92 Aligned_cols=269 Identities=17% Similarity=0.168 Sum_probs=187.2
Q ss_pred CCcEEEecCcHHHHHHHHHHhc----------CCCCeEEecCCCCCChh-hhhhhccCcE------------EEEEeCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA----------DHGNALLVPSPYYPGFD-RDIRFRTGVE------------LIPVHCRS 73 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~----------~~gd~vl~~~p~~~~~~-~~~~~~~g~~------------v~~v~~~~ 73 (334)
.+.+++++++++|+..++.... ..+++|+....+|.+.. ..+. ..+.. +..++.
T Consensus 97 ~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 173 (396)
T PRK04073 97 KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVS-LSSEEEYKRGFGPMLPGIKKIPY-- 173 (396)
T ss_pred CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHh-hcCCcccccCCCCCCCCceEeCC--
Confidence 4689999999999999888652 12367888777666543 3333 22211 122221
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
.|++++++++++ ++++|++..++||+|.+++.+ .+++|.++|++||+++|+||+|.++.+.+..+.
T Consensus 174 -----~d~~~l~~~i~~------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~-- 240 (396)
T PRK04073 174 -----GDLEALKAAITP------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFA-- 240 (396)
T ss_pred -----CCHHHHHHhccc------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHH--
Confidence 268888888865 788888887799999998765 599999999999999999999998655443211
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
... .+....+.++||.+|.+|+|+||+++ ++++.+.+.. ....++.+++.+.++.+.++..+ + ..
T Consensus 241 ~~~-------~~~~pdi~~~sK~lg~gg~~ig~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~--~---~~ 307 (396)
T PRK04073 241 CDW-------DNVTPDMYILGKALGGGVFPISCVAA-NRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLE--E---EK 307 (396)
T ss_pred hhh-------cCCCCCEEEecccccCCCCcceEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--h---cC
Confidence 111 11111234689999977899999998 8888888764 33456778888888888875321 1 12
Q ss_pred HHHHHHHHHHHHHHHHHhCCC---cccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 231 NKRRIKKLYDSFVAGLKQLGI---RCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~g~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
..++.+++.+++.+.|++++. ....+ .|.+++++++. ++.++...|+ ++||.+.+.. ++++
T Consensus 308 l~~~~~~~~~~l~~~L~~l~~~~i~~~~~-~g~~~~~~~~~--------~~~~~~~~l~-~~Gv~~~~~~------~~~i 371 (396)
T PRK04073 308 LPERSLELGEYFKEQLKEIDNPMIKEVRG-RGLFIGVELNE--------PARPYCEALK-EEGLLCKETH------ETVI 371 (396)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccceec-ceEEEEEEecc--------hHHHHHHHHH-HCCeEEecCC------CCEE
Confidence 334556667888888877532 22233 35667787753 2357788855 4899987631 4689
Q ss_pred EEEecC-CCcccHHHHHHHHHHHH
Q 019899 308 RCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 308 Ri~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
|++++. .+++++++++++|++++
T Consensus 372 Ri~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 372 RFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEECCcccCHHHHHHHHHHHHHHh
Confidence 999763 69999999999999876
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=190.40 Aligned_cols=279 Identities=13% Similarity=0.150 Sum_probs=189.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+.+.++...+ .++.+++++++.++..++.+++++||+|+++.|.|++....+.. ..|.++..++. .|+
T Consensus 66 Le~~lA~l~G--~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-------~d~ 136 (386)
T PRK06767 66 FEERMAVLEG--GEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM-------ETE 136 (386)
T ss_pred HHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC-------CCH
Confidence 4444554444 34566677778899999999999999999999999877665441 24565555543 378
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++++|+||||.+.| +++|.++|+++|+++++|++|+...+. .++
T Consensus 137 ~~l~~~i~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~----~pl--------- 194 (386)
T PRK06767 137 ADIENKIRP------NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQ----RPL--------- 194 (386)
T ss_pred HHHHHhhCc------CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch---------
Confidence 899988875 7899999999999999999 889999999999999999998642221 111
Q ss_pred CCCcEEEEecccccCCCCCceE-EEEeecCHHHHHHHH-Hhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVLAAAK-KLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..+.++++.|++|.++.+|.++ |++++ +++.++.+. ...... ..++..+..+...++. +..+.++..+
T Consensus 195 ~~g~Div~~S~sK~l~g~g~~~gG~v~~-~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~t-------l~~r~~~~~~ 266 (386)
T PRK06767 195 ELGCDAVVHSATKYIGGHGDVVAGVTIC-KTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKT-------LAVRMDRHCD 266 (386)
T ss_pred hcCCcEEEecCcceecCCCCceeEEEEe-ChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-------HHHHHHHHHH
Confidence 1355688899999998788775 88887 666655543 332222 2344433333333332 2334566788
Q ss_pred HHHHHHHHHHhC-CCcccC------------CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC---
Q 019899 238 LYDSFVAGLKQL-GIRCSE------------SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC--- 301 (334)
Q Consensus 238 ~~~~~~~~l~~~-g~~~~~------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--- 301 (334)
++..+.+.|+++ +++.+. ..+|+ +.+++... .++...+.+. ++..++.+.-|.....
T Consensus 267 ~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~-vsf~l~~~-----~~~~~~f~~~-l~~~~~~~s~G~~~sl~~~ 339 (386)
T PRK06767 267 NAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGV-ISFSIKGG-----KEETQAFIND-LHFITIAVSLGDTETLIQH 339 (386)
T ss_pred HHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCce-EEEEEcCC-----HHHHHHHHHh-CCccEEecCCCCcCccccC
Confidence 888899999887 555221 23344 44566421 2345567777 5667776655543211
Q ss_pred ------------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 302 ------------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 ------------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
..++-+|+|++ -|+.+.+++.|.+++++
T Consensus 340 p~~~~~~~~~~~~~~~~gi~~~l~R~svG---lE~~~dl~~dl~~al~~ 385 (386)
T PRK06767 340 PATMTHAAIPAELRQEMGIYDNLIRLSVG---LESWEDIVSDLEQALKK 385 (386)
T ss_pred CCccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 01357999999 77888899999988864
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=185.40 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=148.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.++...+ .+++++++|+++|+..++.+++++||+|+++.+.|++.... +. ..|.+++.+++. |
T Consensus 66 le~~la~l~g--~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~-~~G~~v~~vd~~-------d 135 (390)
T PRK08133 66 FQERLAALEG--AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFA-RFGIETTFVDLT-------D 135 (390)
T ss_pred HHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHH-HcCcEEEEECCC-------C
Confidence 4455554444 45789999999999999999999999999999999876653 34 579999999852 6
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
.+++++++++ ++++|++++|+||+|.+.+ +++|+++|+++|+++|+|++|...... .++ .
T Consensus 136 ~~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~----~pl----~--- 195 (390)
T PRK08133 136 LDAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQ----QPL----K--- 195 (390)
T ss_pred HHHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch----h---
Confidence 8889988876 7899999999999999999 899999999999999999998643221 111 1
Q ss_pred cCCCcEEEEecccccCCCCCceEE-EEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTG-VIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g-~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.+++++|+||+++.+|.++| +++. +++.++.+.......+ .++.. +..++...+ .+..+.++..+
T Consensus 196 --~g~Divv~S~sK~~~g~g~~~GG~vv~-~~~~~~~~~~~~~~~g~~~~~~~---a~~~l~gl~----tl~~R~~~~~~ 265 (390)
T PRK08133 196 --LGADVVIHSATKYLDGQGRVLGGAVVG-SKELMEEVFGFLRTAGPTLSPFN---AWVFLKGLE----TLSLRMEAHSA 265 (390)
T ss_pred --hCCcEEEeecceeecCCcceEeEEEEc-CHHHHHHHHHHHHHhCCCCCHHH---HHHHHcccc----hHHHHHHHHHH
Confidence 3456889999999987888874 5555 6776666654433322 23333 223333322 22334445556
Q ss_pred HHHHHHHHHHhC
Q 019899 238 LYDSFVAGLKQL 249 (334)
Q Consensus 238 ~~~~~~~~l~~~ 249 (334)
++..+.+.|+++
T Consensus 266 ~a~~la~~L~~~ 277 (390)
T PRK08133 266 NALALAEWLEAH 277 (390)
T ss_pred HHHHHHHHHHhC
Confidence 777888888776
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=186.74 Aligned_cols=302 Identities=13% Similarity=0.123 Sum_probs=192.3
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+.++++..++. ++.++.++++.++..++.+++++||.|+++++.|+++...+. ..+.++++++. .|++++
T Consensus 48 LE~~lA~~~g~--e~al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~~-l~~~~~~~~~~-------~d~~~l 117 (392)
T PLN03227 48 LEQCMAEFLGT--ESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVS-LSRANVRWFRH-------NDMKDL 117 (392)
T ss_pred HHHHHHHHhCC--CcEEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHH-HcCCeEEEeCC-------CCHHHH
Confidence 44455555543 344455555445568888899999999999999999988877 77778877774 234555
Q ss_pred HHHHHHHHH--------cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCC--CCcchhhh
Q 019899 85 DQAFNQARK--------RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGN--EEFVSMAE 154 (334)
Q Consensus 85 ~~~l~~~~~--------~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~--~~~~~~~~ 154 (334)
++.++.... ...++++|++.++.||+|.+.| ++++.++|++||+++|+||+|+...++. ........
T Consensus 118 ~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g 194 (392)
T PLN03227 118 RRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAG 194 (392)
T ss_pred HHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcC
Confidence 554433321 1236788888888999999999 8899999999999999999997333321 12122211
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCC--hHHHHHHHHhhCChHHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSIS--APTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
+.+ ..+.++++.|+||.+|.. .|++++ ++++.+.++... ..++.+ +..+.++...+.... + ..+
T Consensus 195 ~~p----~~~~Div~~slsk~~g~~---gg~v~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~--~--~~~ 262 (392)
T PLN03227 195 LKP----MVHAEIVTFSLENAFGSV---GGMTVG-SEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGEL--A--GPQ 262 (392)
T ss_pred CCC----CCCceEEEeechhhhhcc---CcEEec-CHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHh--c--CHH
Confidence 211 145678889999988634 488877 788877776432 234443 444444444443211 1 135
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccc----------CCCceeEEeeecCCcCCCC---ChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 231 NKRRIKKLYDSFVAGLKQLGIRCS----------ESSAGLYCWADMSGLIPSY---SEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~g~~~~----------~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
+.++++++.+++.+.|++.++... ....+.++.+.+....... ......++.+.++ ++|+.+.+..
T Consensus 263 ~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gi~~~~~~ 341 (392)
T PLN03227 263 LLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSL-SEGVAVVSTG 341 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHH-HCCCEEEecc
Confidence 667788888999999976544321 1122444556664311100 0011236777744 4799886421
Q ss_pred C-----cCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 298 A-----CHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 298 ~-----~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
. .....+..+|++++. .|++|++++++.|++++++
T Consensus 342 ~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~ 382 (392)
T PLN03227 342 GHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEA 382 (392)
T ss_pred cccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1 112235779999986 7999999999999999865
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=176.39 Aligned_cols=282 Identities=18% Similarity=0.219 Sum_probs=218.0
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
+-++++.++|.++.+++.++.+|||+||+.....++ +.+.++ .+|.+++.+.. +.+..+++++++++|++.
T Consensus 57 ~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~-~~g~~v~~~~~--~wg~~v~p~~v~~~L~~~---- 129 (383)
T COG0075 57 DVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAE-RYGAEVVVLEV--EWGEAVDPEEVEEALDKD---- 129 (383)
T ss_pred cEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHH-HhCCceEEEeC--CCCCCCCHHHHHHHHhcC----
Confidence 446666778999999999999999999998766554 445566 89999999998 577899999999999952
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccccc
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKD 175 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~ 175 (334)
++++++.+++..++||+..| +++|+++|++||.++|+|.+-+. ++. ...+. +++.++++++..|.
T Consensus 130 ~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS~---Gg~-~~~vd--------~wgiDv~itgSQK~ 194 (383)
T COG0075 130 PDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSSL---GGE-PLKVD--------EWGIDVAITGSQKA 194 (383)
T ss_pred CCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEecccC---CCc-ccchh--------hcCccEEEecCchh
Confidence 47899999999999999999 99999999999999999998663 222 22222 27889999999999
Q ss_pred CCCCCceEEEEeecCHHHHHHHHHh--------------------hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 176 LSLPGFRTGVIYSYNESVLAAAKKL--------------------TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 176 ~~~~g~r~g~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
++.| ..+|.+.. +++..+.+... ..+++++....+++..+++... ++-++.+.+++
T Consensus 195 l~~P-PGla~v~~-S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~--~EGle~r~~RH 270 (383)
T COG0075 195 LGAP-PGLAFVAV-SERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLIL--EEGLEARIARH 270 (383)
T ss_pred ccCC-CccceeEE-CHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHH--HhhHHHHHHHH
Confidence 9633 34788887 56554544321 2234566677788888876543 55678999999
Q ss_pred HHHHHHHHHHHHhCCCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec
Q 019899 236 KKLYDSFVAGLKQLGIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT 312 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~ 312 (334)
+++.+.+++.++.+|++....+ ..-...+..|..++. .+....+++++|+.+.+|.. +.....+||+..
T Consensus 271 ~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~------~~~~~~~~~~~g~~i~gg~~--~l~gkifRIGhM 342 (383)
T COG0075 271 RRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDD------KKVRRALLKEYGVEIAGGQG--PLKGKIFRIGHM 342 (383)
T ss_pred HHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCc------HHHHHHHHHhCCEEeccccc--ccCccEEEEecC
Confidence 9999999999999999987622 233455677776542 35555778889999987664 334678999855
Q ss_pred -CCCcccHHHHHHHHHHHHHHc
Q 019899 313 -SLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 313 -~~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++.++..++.+|..++.++
T Consensus 343 G~~~~~dv~~~l~ale~~L~~~ 364 (383)
T COG0075 343 GNVRPEDVLAALAALEAALREL 364 (383)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc
Confidence 469999999999999999875
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=187.84 Aligned_cols=275 Identities=16% Similarity=0.137 Sum_probs=186.7
Q ss_pred CcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChh-hhhhhccCcEEE---EEeCCCCCCc--cccHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFD-RDIRFRTGVELI---PVHCRSTDNF--AFSITALDQAFN 89 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~-~~~~~~~g~~v~---~v~~~~~~~~--~~~~~~l~~~l~ 89 (334)
+.+++++++++|+..++.... ..+++|+..+++|++.. ..+. ..+.... ..|..++..+ ..|++.+++.++
T Consensus 87 ~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 165 (377)
T PRK02936 87 DLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMS-ATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMN 165 (377)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhh-ccCCccccccCCCCCCCceEeCCCCHHHHHHhcc
Confidence 589999999999999998542 23467888888887543 2333 2232111 0111000000 126888998886
Q ss_pred HHHHcCCceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEE
Q 019899 90 QARKRGVKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 90 ~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (334)
+ +++++++..+++++|.. .+.+.+++|.++|++||+++|+||+|.++.+.+..+ ...... +.++
T Consensus 166 ~------~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-~~~~~~----~~~d---- 230 (377)
T PRK02936 166 E------EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-AYEQFG----LDPD---- 230 (377)
T ss_pred C------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HHHhhC----CCCc----
Confidence 4 68888888778898886 578899999999999999999999998876655422 211111 1122
Q ss_pred EecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 169 IYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246 (334)
Q Consensus 169 ~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (334)
+.++||.++ +|+|+||+++ ++++.+.+.... ..++.+++.+.++.++++..+. ....++++++.+++.+.|
T Consensus 231 i~t~sK~l~-~G~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~l~~~L 303 (377)
T PRK02936 231 IVTVAKGLG-NGIPVGAMIG-KKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-----PSFLEEVQEKGEYFLQKL 303 (377)
T ss_pred EEEEccccc-CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHH
Confidence 347999999 9999999998 788888876432 3456788999998888865321 123345556666666666
Q ss_pred HhC--CCccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHH
Q 019899 247 KQL--GIRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPL 321 (334)
Q Consensus 247 ~~~--g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~ 321 (334)
++. ++... ....|+++|++++.. ...+... +.++||.+.|+. .+++|++++. .+++++++
T Consensus 304 ~~~~~~~~~~~~v~~~g~~~~i~~~~~--------~~~~~~~-l~~~gv~v~~~g------~~~lRi~p~~~~~~~~i~~ 368 (377)
T PRK02936 304 QEELEHLECVKNIRGKGLMIGIECTEE--------VAPVIEQ-LREEGLLVLSAG------PNVIRLLPPLVVTKEELDQ 368 (377)
T ss_pred HHHHhhCCcEEeEeecceEEEEEecch--------HHHHHHH-HHHCCeEEecCC------CCEEEEECCcccCHHHHHH
Confidence 552 23221 123578899998742 3456666 566899998743 4689999753 69999999
Q ss_pred HHHHHHHHH
Q 019899 322 VIERIQKVA 330 (334)
Q Consensus 322 ~l~~l~~~~ 330 (334)
++++|++++
T Consensus 369 ~i~~l~~~~ 377 (377)
T PRK02936 369 AVYLLKKVL 377 (377)
T ss_pred HHHHHHHhC
Confidence 999998763
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-23 Score=183.56 Aligned_cols=208 Identities=17% Similarity=0.177 Sum_probs=155.6
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~ 80 (334)
-+.+.++...+ .+++++++|+++++..++.+++++||+|+++.|+|++....+.. ..|.+++.++. .|
T Consensus 57 ~Le~~lA~leg--~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-------~d 127 (388)
T PRK08861 57 LLEQTLSELES--GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-------SD 127 (388)
T ss_pred HHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-------CC
Confidence 34555555444 58999999999999999999999999999999999975554321 34677777762 47
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||||.++| +++|.++|+++|+++++|++|....+. .++
T Consensus 128 ~e~l~~~i~~------~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~----~pl-------- 186 (388)
T PRK08861 128 AAALDAALAK------KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ----KPL-------- 186 (388)
T ss_pred HHHHHHhcCc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC----CCc--------
Confidence 8999988876 7899999999999999999 888999999999999999999753321 111
Q ss_pred cCCCcEEEEecccccCCC-CCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSL-PGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~-~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
+.+.+++++|++|+++. .+...|++++.++++.+.++..+... ..++.....+..-++.. .-+.++..+
T Consensus 187 -~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl-------~lR~~~~~~ 258 (388)
T PRK08861 187 -ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTL-------GARMRVHEE 258 (388)
T ss_pred -ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCH-------HHHHHHHHH
Confidence 14566899999999964 35778998876677777777655443 34555555555555543 334456677
Q ss_pred HHHHHHHHHHhC
Q 019899 238 LYDSFVAGLKQL 249 (334)
Q Consensus 238 ~~~~~~~~l~~~ 249 (334)
++..+.+.|+++
T Consensus 259 ~a~~~a~~L~~~ 270 (388)
T PRK08861 259 SAQQILAYLQTQ 270 (388)
T ss_pred HHHHHHHHHHhC
Confidence 778888888876
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=187.02 Aligned_cols=282 Identities=16% Similarity=0.258 Sum_probs=181.5
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~ 80 (334)
-+++.+++..+++ ...++++++.++..++.+++++||+|+++.+.|+++...+. ...|.+++.++ .+|
T Consensus 69 ~Le~~lA~l~G~~--~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd-------~~d 139 (398)
T PRK07504 69 MFEKRMCALEGAE--DARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVD-------GLD 139 (398)
T ss_pred HHHHHHHHHhCCC--eeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEEC-------CCC
Confidence 3445555555544 34567788889988888888999999999999998655432 14688888876 368
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||+|.+.| +++|.++|+++|+++|+|++|+...+. .+. .
T Consensus 140 ~e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~----~~~----~--- 199 (398)
T PRK07504 140 LDNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQ----KPL----E--- 199 (398)
T ss_pred HHHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccC----Cch----h---
Confidence 9999999876 8999999999999999999 899999999999999999999754321 111 1
Q ss_pred cCCCcEEEEecccccCCCCCceEE-EEeecCHHHHH-HHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTG-VIYSYNESVLA-AAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g-~i~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
.+.++++.|++|.++.+|.++| ++++ +++.++ .++...... ..++.....+..-++. +..+.++..
T Consensus 200 --~gaDivv~S~sK~l~g~g~~~GG~vv~-~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~t-------l~~R~~~~~ 269 (398)
T PRK07504 200 --LGAHIVVYSATKHIDGQGRCLGGVVLS-DKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLET-------LPVRVRQQT 269 (398)
T ss_pred --hCCCEEEeeccccccCCccceEEEEEe-CcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccch-------HHHHHHHHH
Confidence 4567889999999987898886 5555 555443 344322222 2333333333333322 233444555
Q ss_pred HHHHHHHHHHHhC-CCc---cc----CC----------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 237 KLYDSFVAGLKQL-GIR---CS----ES----------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 237 ~~~~~~~~~l~~~-g~~---~~----~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+++..+.+.|+++ ++. ++ .| ..|-.+.+++... .+....+.+. ++-..+.+.-|..
T Consensus 270 ~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-----~~~~~~~~~~-l~~~~~~~slG~~ 343 (398)
T PRK07504 270 ESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGG-----KEAAFRFLNA-LKIVRISNNLGDA 343 (398)
T ss_pred HHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCC-----HHHHHHHHHh-CCcceecccCCCC
Confidence 7777777788765 332 11 11 1133445666421 1223344444 3323332222221
Q ss_pred cC----------C-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 299 CH----------C-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 299 ~~----------~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.. . ..++-+|+|++ -|+.+++++.|.+++++.
T Consensus 344 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG---lE~~~dl~~dl~~al~~~ 396 (398)
T PRK07504 344 KSLITHPATTTHKNLSPEARAELGISEGFLRLSAG---LEDTDDLIEDLAAALKKV 396 (398)
T ss_pred CeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHHhh
Confidence 10 0 02357999999 677888888888888764
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-23 Score=184.44 Aligned_cols=282 Identities=16% Similarity=0.139 Sum_probs=189.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.+.++...+ .+++++++|+++|+..++.+++++||+|+++.|+|.++... +. ..|.+++.++.. +
T Consensus 70 Le~~lA~l~g--~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~-~~Gi~v~~vd~~-------~ 139 (394)
T PRK07050 70 LAQRLAEIEG--GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLAR-DFGITVRFYDPL-------I 139 (394)
T ss_pred HHHHHHHHhC--CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHH-hcCeEEEEECCC-------C
Confidence 4444554443 56899999999999999999999999999999999987753 34 679999888741 3
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
.+++++++++ ++++|++++|+||+|...+ +++|.++|+++|+++++|++|.... ...++.
T Consensus 140 ~~~l~~~i~~------~tklV~le~p~Np~~~~~d---i~~I~~ia~~~gi~livD~a~a~~~-------~~~~l~---- 199 (394)
T PRK07050 140 GAGIADLIQP------NTRLIWLEAPGSVTMEVPD---VPAITAAARARGVVTAIDNTYSAGL-------AFKPFE---- 199 (394)
T ss_pred HHHHHHhcCC------CCeEEEEECCCCCCccHhh---HHHHHHHHHHcCCEEEEECCccccc-------ccCHHH----
Confidence 4678888765 7999999999999986666 9999999999999999999987522 111221
Q ss_pred cCCCcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.++++.|++|.++ ..+...|++++.++++.++++..+... +.++.....+...++.. ..+.++..+
T Consensus 200 --~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl-------~~Rl~~~~~ 270 (394)
T PRK07050 200 --HGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSL-------QVRLAAHDR 270 (394)
T ss_pred --cCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcH-------HHHHHHHHH
Confidence 466789999999995 345678988887888888887655543 34444433333333332 224445556
Q ss_pred HHHHHHHHHHhC-CCc-cc--C--------------CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 238 LYDSFVAGLKQL-GIR-CS--E--------------SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 238 ~~~~~~~~l~~~-g~~-~~--~--------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
++..+.+.|+++ .+. +. . ...|-.+.+++.... ..++..++.+. ++..++.+.-|...
T Consensus 271 ~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~---~~~~~~~~~~~-l~~~~~~~s~G~~~ 346 (394)
T PRK07050 271 SALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY---SPAQVDAFVEA-LELFAIGWSWGGAC 346 (394)
T ss_pred HHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC---CHHHHHHHHHc-CCCCeeccccCCcc
Confidence 666777777665 221 10 0 112223445554221 12345566666 55566654433322
Q ss_pred CC---------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 300 HC---------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~~---------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
.. ..++-+|+|++ -|+.+.+++.|.+++++
T Consensus 347 sl~~~~~~~~~~~~~~~~~~~~iR~svG---lE~~~dl~~dl~~al~~ 391 (394)
T PRK07050 347 SLAMPYDVASMRTAKWPHRGTLVRLYIG---LEDEADLIADLEQALEA 391 (394)
T ss_pred ceEeeCcccccchhhcCCCCCEEEEEeC---cCCHHHHHHHHHHHHHH
Confidence 10 01257999999 67788888888888765
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-23 Score=182.10 Aligned_cols=272 Identities=14% Similarity=0.145 Sum_probs=180.8
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~ 80 (334)
.+.+.++... .++.++++++++++..++.+++++||+|+++.|.|+++...+. ...|.+++.++..+ .
T Consensus 55 ~Le~~lA~l~---~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~--~---- 125 (366)
T PRK07582 55 ALEAALGELE---GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAG--M---- 125 (366)
T ss_pred HHHHHHHHHc---CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCC--h----
Confidence 3455565544 3567777777889999999999999999999999988876442 14799999998632 1
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
.+ .+.+ ++++|++++|+||+|.+.+ +++|+++|+++|+++++|++|.... + ..++ .
T Consensus 126 ~~----~~~~------~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~--~--~~p~-~------ 181 (366)
T PRK07582 126 AE----AALA------GADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL--G--QRPL-E------ 181 (366)
T ss_pred HH----Hhcc------CceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc--c--cCch-h------
Confidence 11 1222 7899999999999999888 9999999999999999999985311 1 1111 1
Q ss_pred cCCCcEEEEecccccC-CCCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.+++++|++|++ |.+|+++||++++++++.+.++...... ..++.....+...++.. ..+.++..+
T Consensus 182 --~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl-------~~R~~~~~~ 252 (366)
T PRK07582 182 --LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTL-------GLRFARQCA 252 (366)
T ss_pred --cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccH-------HHHHHHHHH
Confidence 34457889999999 4567999999986788888887654443 34555555555555442 233355667
Q ss_pred HHHHHHHHHHhC-CCc---cc----CC-----------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 238 LYDSFVAGLKQL-GIR---CS----ES-----------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 238 ~~~~~~~~l~~~-g~~---~~----~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
++..+.+.|+++ .+. ++ .| .+|+ +.+++.. .+-..++++..++... +..
T Consensus 253 na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~-~s~~~~~----------~~~~~~~~~~l~~~~~-~~s 320 (366)
T PRK07582 253 NALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGL-VSFELAD----------AAAAERFVAASRLVVA-ATS 320 (366)
T ss_pred HHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcce-EEEEeCC----------HHHHHHHHHhCCccee-ccc
Confidence 788888888776 222 11 12 2343 4456642 1333344565665432 111
Q ss_pred cCC--------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 299 CHC--------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 ~~~--------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
+|. ..++.+|+|++ -|+.+++++.|.+++++
T Consensus 321 ~G~~~sl~~~~~~~~~~~~~~liR~svG---lE~~~dli~dl~~al~~ 365 (366)
T PRK07582 321 FGGVHTSADRRARWGDAVPEGFVRLSCG---IEDTDDLVADLERALDA 365 (366)
T ss_pred CCCccchhhhHHHcCCCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 111 12357999999 55667778888877765
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-22 Score=182.81 Aligned_cols=205 Identities=13% Similarity=0.161 Sum_probs=149.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.++...+ .++.++++++++|+..++.+++++||+|+++.|+|++.... +. ..|++++.++. .|
T Consensus 69 le~~lA~l~g--~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~-~~Gi~v~~vd~-------~d 138 (398)
T PRK08249 69 FEEKVRILEG--AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLP-RMGVDVTLCET-------GD 138 (398)
T ss_pred HHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHh-hCCeEEEEcCC-------CC
Confidence 4455554444 45678888889999999999999999999999999976543 34 57888877763 58
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||||.+.| +++|.++|+++|+++|+|++|+..... .+. .
T Consensus 139 ~e~l~~~i~~------~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~----~~l----~--- 198 (398)
T PRK08249 139 HEQIEAEIAK------GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQ----NPL----A--- 198 (398)
T ss_pred HHHHHHhcCC------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccC----Cch----h---
Confidence 8999999976 7899999999999999999 888999999999999999999854321 111 1
Q ss_pred cCCCcEEEEecccccCCCCCceE-EEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.++++.|+||.++.+|.++ |+++. ++++.+.++...... ..++..+..+..-++. +..+.++..+
T Consensus 199 --~~~Divv~S~sK~l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t-------L~~R~~~~~~ 268 (398)
T PRK08249 199 --LGADLVIHSATKFLSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMKT-------LKLRVRQQQE 268 (398)
T ss_pred --hCCCEEeccCceecCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-------HHHHHHHHHH
Confidence 344578899999998667666 55555 888888887655433 3344444433333322 2334455667
Q ss_pred HHHHHHHHHHhC
Q 019899 238 LYDSFVAGLKQL 249 (334)
Q Consensus 238 ~~~~~~~~l~~~ 249 (334)
+++.+.+.|+++
T Consensus 269 na~~la~~L~~~ 280 (398)
T PRK08249 269 SAMALAKYLQTH 280 (398)
T ss_pred HHHHHHHHHHcC
Confidence 778888888775
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=184.73 Aligned_cols=160 Identities=18% Similarity=0.331 Sum_probs=128.3
Q ss_pred CCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 16 DPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
..+++++|+|+++|+.+++.++ .++||+|+++.++|.++...+. ..|++++.+++++ +++.+|++++++++++
T Consensus 45 g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~-~~G~~~v~vd~d~-~~~~~d~~~le~~i~~---- 118 (376)
T TIGR02379 45 GTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFV-LRGAKIVFVDIRP-DTMNIDETLIESAITH---- 118 (376)
T ss_pred CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-HcCCEEEEEecCC-CcCCCCHHHHHHhcCc----
Confidence 3578999999999999999887 7899999999999999988888 8899999999864 4578999999999876
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcEEEEecc-
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRVHIIYGL- 172 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 172 (334)
++++|+ |+||+|...+ +++|.++|+++|++||+|++|+.+. +.+....++ + .+.+.||
T Consensus 119 --~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~-----------~-~~~~fSf~ 178 (376)
T TIGR02379 119 --RTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSI-----------G-HLGTFSFH 178 (376)
T ss_pred --CceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCcccCCC-----------C-CEEEEeCC
Confidence 788775 5678999998 8899999999999999999998754 443322111 1 1223333
Q ss_pred -cccCCCCCceEEEEeecCHHHHHHHHHhhc
Q 019899 173 -SKDLSLPGFRTGVIYSYNESVLAAAKKLTR 202 (334)
Q Consensus 173 -sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~ 202 (334)
+|.+. +|.+.|+++++++++.++++..+.
T Consensus 179 ~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~ 208 (376)
T TIGR02379 179 ETKNYT-SGGEGGALLINDQAFIERAEIIRE 208 (376)
T ss_pred CCCcCc-ccCCceEEEECCHHHHHHHHHHHH
Confidence 37775 677889999878999888876543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-23 Score=182.97 Aligned_cols=280 Identities=15% Similarity=0.187 Sum_probs=184.3
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
.+.+.++...+. +..++++++++++..++.+++++||+|+++.|.|...... +. ..|.+++.+++.
T Consensus 63 ~le~~lA~l~g~--~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~-~~G~~~~~vd~~------- 132 (391)
T TIGR01328 63 NLEGRIAFLEGT--EAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALT-KFGIQVDFINMA------- 132 (391)
T ss_pred HHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHh-cCCeEEEEECCC-------
Confidence 345555555543 4578888889999999999999999999999988765443 33 578999888852
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+..... .+ + .
T Consensus 133 d~e~l~~~i~~------~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~----~~---~-~-- 193 (391)
T TIGR01328 133 IPEEVKAHIKD------NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLT----NP---V-A-- 193 (391)
T ss_pred CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccC----Cc---h-h--
Confidence 68899998876 7899999999999999999 889999999999999999999753321 11 1 1
Q ss_pred ccCCCcEEEEecccccCCCCCceE-EEEeecCHHHHHHHHHhh--ccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVLAAAKKLT--RFC--SISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
.+.++++.|++|.++.+|.++ |+++. ++++.+.++... ..+ ..++.....+..-++. +..+.++
T Consensus 194 ---~g~Divv~S~sK~lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t-------l~~r~~~ 262 (391)
T TIGR01328 194 ---LGVDVVVHSATKYIGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT-------LNIRMKR 262 (391)
T ss_pred ---cCCCEEEccccccccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc-------HHHHHHH
Confidence 355588899999998788764 66665 888888777532 222 2333333333333332 2334555
Q ss_pred HHHHHHHHHHHHHhC-CCccc------------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 235 IKKLYDSFVAGLKQL-GIRCS------------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~-g~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
..++.+.+.+.|+++ ++..+ ...+|+ +.+++... ......+.+. ++-..+...-
T Consensus 263 ~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~-~s~~~~~~-----~~~~~~f~~~-l~~~~~~~s~ 335 (391)
T TIGR01328 263 HSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGM-ITFELKGG-----FAGAKKLLNN-LKLIRLAVSL 335 (391)
T ss_pred HHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCce-EEEEeCCC-----HHHHHHHHHh-CCcceEecCC
Confidence 667777788888775 22211 112333 44566421 1122333333 3322222222
Q ss_pred CCCcC----C-----------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 296 GSACH----C-----------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 296 g~~~~----~-----------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
|.... + ..++-+|+|++ .||.+.+++.|.++++++
T Consensus 336 G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG---lE~~~dl~~dl~~al~~~ 391 (391)
T TIGR01328 336 GDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG---LEDADDLIADLKQALDAL 391 (391)
T ss_pred CCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeC---cCCHHHHHHHHHHHHhhC
Confidence 22210 0 01357999999 778899999999998753
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=181.93 Aligned_cols=205 Identities=18% Similarity=0.190 Sum_probs=147.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.++...+. +..++++++++++.+++.+++++||+|+++.|.|..... .+. ..|.+++.++. .|
T Consensus 70 le~~lA~l~g~--~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~-~~G~~v~~vd~-------~d 139 (403)
T PRK07503 70 LEQRMASLEGG--EAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLG-EFGVTVRHVDL-------TD 139 (403)
T ss_pred HHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHh-hCCEEEEEeCC-------CC
Confidence 44555555544 346777788899999999999999999999999976443 334 57999998885 26
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||+|.+.| +++|.++|+++|+++|+|++|+..... .++ .
T Consensus 140 ~~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~----~~l----~--- 199 (403)
T PRK07503 140 PAALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQ----RPL----E--- 199 (403)
T ss_pred HHHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch----h---
Confidence 8899998876 7899999999999999999 899999999999999999999753221 111 1
Q ss_pred cCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh--hcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL--TRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.+.++++.|++|.++.+| .+.|+++. ++++.++++.. ... ...++.....+..-++. +..+.++.
T Consensus 200 --~g~Di~v~S~tK~l~g~gd~~gG~v~~-~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~t-------l~~r~~~~ 269 (403)
T PRK07503 200 --LGADLVVHSATKYLGGHGDITAGLVVG-GKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKT-------LALRMDRH 269 (403)
T ss_pred --hCCCEEEccccccccCCCceeEEEEEc-CHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcch-------HHHHHHHH
Confidence 345688999999998665 78888886 88888887633 222 23444444433333322 22333344
Q ss_pred HHHHHHHHHHHHhC
Q 019899 236 KKLYDSFVAGLKQL 249 (334)
Q Consensus 236 ~~~~~~~~~~l~~~ 249 (334)
.+++..+.+.|+++
T Consensus 270 ~~na~~~a~~L~~~ 283 (403)
T PRK07503 270 CASAQAVAEWLARH 283 (403)
T ss_pred HHHHHHHHHHHHhC
Confidence 56667777777765
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-23 Score=183.38 Aligned_cols=281 Identities=15% Similarity=0.176 Sum_probs=182.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+++.++...+.+ ..++++++++|+.+++.+++++||+|+++.|+|++....+.. ..|.++..++. .|+
T Consensus 66 Le~~lA~~~g~~--~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-------~d~ 136 (388)
T PRK07811 66 LEEQLAALEGGA--YGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL-------SDL 136 (388)
T ss_pred HHHHHHHHhCCC--ceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC-------CCH
Confidence 455555544433 345566778999999999999999999999999976554331 25777777764 478
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+..... .++ .
T Consensus 137 e~l~~~i~~------~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~----~p~----~---- 195 (388)
T PRK07811 137 DAVRAAITP------RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ----QPL----A---- 195 (388)
T ss_pred HHHHHhcCc------CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC----Cch----h----
Confidence 999998876 7899999999999999988 999999999999999999999753321 111 1
Q ss_pred CCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+.++++.|++|.++.+| .+.||++++++++.+.++......+ .++.....+...++. +..+.++..++
T Consensus 196 -~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t-------l~~R~~~~~~n 267 (388)
T PRK07811 196 -LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT-------LAVRMDRHSEN 267 (388)
T ss_pred -hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-------HHHHHHHHHHH
Confidence 345688999999997554 5789998867888777766544432 233332222333332 23445556677
Q ss_pred HHHHHHHHHhC-CCcc---cC----C----------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 239 YDSFVAGLKQL-GIRC---SE----S----------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 239 ~~~~~~~l~~~-g~~~---~~----~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
...+.+.|+++ ++.. .. | ..|-.+.+++... ......+.+. ++-..+...-|....
T Consensus 268 a~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-----~~~~~~f~~~-l~~~~~~~s~G~~~s 341 (388)
T PRK07811 268 AEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGG-----EEAARDFCAR-TKVFTLAESLGGVES 341 (388)
T ss_pred HHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCC-----HHHHHHHHHh-CCcceeeccCCCCcc
Confidence 88888888776 2221 10 0 1122445666421 1122333333 222222222222110
Q ss_pred ----------C--------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 301 ----------C--------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 301 ----------~--------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
. ..++-+|+|++ -|+.+.+++.|.+++++
T Consensus 342 l~~~~~~~~~~~~~~~~~gi~~~liR~svG---lE~~~dl~~dl~~al~~ 388 (388)
T PRK07811 342 LIEHPSAMTHASTAGSQLEVPDDLVRLSVG---IEDVADLLADLEQALGQ 388 (388)
T ss_pred eEeCCcccCcccCCHhhcCCCCCEEEEEeC---CCCHHHHHHHHHHHhhC
Confidence 0 01357999999 67788888888888753
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=180.70 Aligned_cols=205 Identities=16% Similarity=0.247 Sum_probs=149.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.+.++...+. +++++++++++++..++.+++++||+|+++.+.|++... .+. ..|.+++.++.. |
T Consensus 59 le~~la~l~g~--~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~-~~g~~v~~v~~~-------d 128 (380)
T TIGR01325 59 FEERIAALEGA--ERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILP-RFGIEVSFVDPT-------D 128 (380)
T ss_pred HHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHH-HhCCEEEEECCC-------C
Confidence 34445544443 578899999999999999999999999999999876443 344 578999888852 6
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||+|.+.| +++|.++|+++|+++|+|++|....+. .++ .
T Consensus 129 ~~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~----~pl----~--- 188 (380)
T TIGR01325 129 LNAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQ----QPL----K--- 188 (380)
T ss_pred HHHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch----h---
Confidence 8888888865 7899999999999999999 899999999999999999998753321 111 1
Q ss_pred cCCCcEEEEecccccCCCCCceE-EEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.++++.|++|.++.+|.++ |++++ ++++.+.++......+ .++... ..++...+. +..+.++..+
T Consensus 189 --~g~Divv~S~sK~l~g~g~~~gG~vv~-~~~~~~~l~~~~~~~g~~~~p~~a---~~~l~~l~t----l~~r~~~~~~ 258 (380)
T TIGR01325 189 --LGADVVVYSATKHIDGQGRVMGGVIAG-SEELMAEVAVYLRHTGPAMSPFNA---WVLLKGLET----LSLRMQKQFD 258 (380)
T ss_pred --hCCCEEEeeccceecCCCCeEEEEEEe-CHHHHHHHHHHHHhhCCCCCHHHH---HHHHhccCc----HHHHHHHHHH
Confidence 455688899999998778776 66666 7778777775543332 233332 233333222 2334556667
Q ss_pred HHHHHHHHHHhC
Q 019899 238 LYDSFVAGLKQL 249 (334)
Q Consensus 238 ~~~~~~~~l~~~ 249 (334)
++..+.+.|+++
T Consensus 259 ~a~~la~~L~~~ 270 (380)
T TIGR01325 259 SALAIAEWLQAQ 270 (380)
T ss_pred HHHHHHHHHHcC
Confidence 777888888876
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=182.31 Aligned_cols=208 Identities=13% Similarity=0.166 Sum_probs=148.1
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
-+++.++...+.+ + .+++++++.++..++. ++++||+|+++.|.|++.... ++ ..|.+++.++. .
T Consensus 58 ~le~~lA~l~g~~-~-~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~-~~G~~v~~v~~-------~ 126 (390)
T PRK08064 58 ALEDIIAELEGGT-K-GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLS-RFGIEHTFVDM-------T 126 (390)
T ss_pred HHHHHHHHHhCCC-C-eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHH-HcCCEEEEECC-------C
Confidence 3455566555544 3 4555666778888886 678999999999999865543 33 57999999985 2
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ ++++|++++|+||||.+.| +++|.++|+++|+++++|++|..+... .++ .
T Consensus 127 d~~~l~~~l~~------~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~----~~~----~-- 187 (390)
T PRK08064 127 NLEEVAQNIKP------NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ----KPL----D-- 187 (390)
T ss_pred CHHHHHHhcCC------CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc----Cch----h--
Confidence 68889888875 7899999999999999998 889999999999999999998753211 111 1
Q ss_pred ccCCCcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+.++++.|++|.++ .+|.-.|++++.++++.+.++.....++.....+.+.. ++..... +..+.++..++
T Consensus 188 ---~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l-~~~gl~t----l~~R~~~~~~~ 259 (390)
T PRK08064 188 ---LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL-VLRGLKT----LHVRLEHSSET 259 (390)
T ss_pred ---hCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHcccCc----HHHHHHHHHHH
Confidence 456788999999985 34456787777678888888877766655443333332 2232221 23445556677
Q ss_pred HHHHHHHHHhC
Q 019899 239 YDSFVAGLKQL 249 (334)
Q Consensus 239 ~~~~~~~l~~~ 249 (334)
+..+.+.|+++
T Consensus 260 a~~la~~L~~~ 270 (390)
T PRK08064 260 ANKIALYLQEH 270 (390)
T ss_pred HHHHHHHHhcC
Confidence 77777777765
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-23 Score=163.88 Aligned_cols=302 Identities=16% Similarity=0.217 Sum_probs=225.6
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+|+.+ ++.+++ .|.+-+|+|+.++-++++.+++++||.|+++..+|+...-+++ ..|.++..||-..-..+.++++
T Consensus 65 ~F~~d-laeFlg--~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAE-ragl~v~eVp~tg~Pey~i~~e 140 (382)
T COG1103 65 DFLED-LAEFLG--MDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAE-RAGLNVAEVPNTGYPEYKITPE 140 (382)
T ss_pred HHHHH-HHHHhC--CceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHH-hcCCeEEecCCCCCCceEecHH
Confidence 44554 555544 6778899999999999999999999999999999998888888 9999999999655677899999
Q ss_pred HHHHHHHHHHHcC-CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 83 ALDQAFNQARKRG-VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 83 ~l~~~l~~~~~~~-~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
...+.|++...++ ..+.+.++++|....|.+.| .++++++|+++|++++...+|.. |..+++..+
T Consensus 141 ~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~----Grmpvs~ke------- 206 (382)
T COG1103 141 GYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTV----GRMPVSGKE------- 206 (382)
T ss_pred HHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceee----ccccccccc-------
Confidence 9999999988764 66899999999888888888 99999999999999999999986 556666654
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-c--------ccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-R--------FCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.+.++.++|-+|+++.+| ++|.+.. +.++.+..-+.+ . .++.+. .-..+..++.+..+..+...+..
T Consensus 207 -~g~DFiVgSGHKsmAAs~-PiGvl~~-~eE~ae~V~r~Sg~~~~~KEvellGCT~-rGapivTlmASfP~V~eRVkrWd 282 (382)
T COG1103 207 -IGADFIVGSGHKSMAASA-PIGVLAM-SEEWAEIVLRRSGRAFPKKEVELLGCTV-RGAPIVTLMASFPHVVERVKRWD 282 (382)
T ss_pred -cCCCEEEecCccchhccC-CeeEEee-hhHHHHHHHhhcccccccceeeeecccc-cCchHHHHHhcCHHHHHHHHHHH
Confidence 566789999999997444 7999988 888877664433 1 122221 11223444445445555544444
Q ss_pred HHHHHHHHHHHHHHHhCC-Cccc--CCCceeEEeeecCCc--CCCCChhhHHHHHHHHHHhcCeE-EcCCCCcCCCCCCe
Q 019899 233 RRIKKLYDSFVAGLKQLG-IRCS--ESSAGLYCWADMSGL--IPSYSEKGELELWDKLLNIAKIN-VTPGSACHCIEPGW 306 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g-~~~~--~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~gi~-v~~g~~~~~~~~~~ 306 (334)
+ --++.+++.+.|+++| +... .|...-.+.+..|.. +..+......-+... |+++||. |.||. ..+
T Consensus 283 e-Ev~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~E-LK~RgI~GI~~G~------Tk~ 354 (382)
T COG1103 283 E-EVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEE-LKKRGIHGIQPGQ------TKY 354 (382)
T ss_pred H-HHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHH-HHhcCccccccCc------eeE
Confidence 4 4466779999999984 6654 455555566666643 111122222335666 6667874 66665 568
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHHcC
Q 019899 307 FRCCFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 307 iRi~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
+.+|+-..+.|+++.+++++++++++++
T Consensus 355 ~K~svyGl~~Eqve~V~~afkeI~eky~ 382 (382)
T COG1103 355 FKLSVYGLSWEQVEYVVDAFKEIAEKYG 382 (382)
T ss_pred EEEEeecCCHHHHHHHHHHHHHHHHhcC
Confidence 9999776899999999999999998864
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=180.58 Aligned_cols=283 Identities=14% Similarity=0.146 Sum_probs=195.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh--------------cCCCCeEEecCCCCCChhhhhhhcc----CcEE
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL--------------ADHGNALLVPSPYYPGFDRDIRFRT----GVEL 66 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l--------------~~~gd~vl~~~p~~~~~~~~~~~~~----g~~v 66 (334)
+.+.+++++ ..++.++.+++..|+..++.++ .+++|.|+++.-+|.+....++ +. +.++
T Consensus 152 LE~~LA~f~--g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~-ls~~~~~a~~ 228 (476)
T PLN02955 152 LESSLADLK--KKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR-LAERQGNVEV 228 (476)
T ss_pred HHHHHHHHH--CCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH-hccccCCceE
Confidence 344445443 3678999999999999999887 2466789999999999999988 55 5777
Q ss_pred EEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC
Q 019899 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG 145 (334)
Q Consensus 67 ~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~ 145 (334)
+.++ +.|+++|++.++... .+.+ ++++.+ .++.|.+.| +++|.++|++||+++|+||+|+.++++
T Consensus 229 ~~f~-------HND~~~Le~~L~~~~---~~~~-~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G 294 (476)
T PLN02955 229 FVYR-------HCDMYHLNSLLSSCK---MKRK-VVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCG 294 (476)
T ss_pred EEeC-------CCCHHHHHHHHHhCC---CCce-EEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceec
Confidence 7776 458999999997642 1334 444555 889999999 999999999999999999999988875
Q ss_pred CC--CcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCC-Ch-HHHHHHHHhhC
Q 019899 146 NE--EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSI-SA-PTQRLLISMLS 219 (334)
Q Consensus 146 ~~--~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~l~ 219 (334)
.. +......+ ..+.+++++||+|++|..| |++++ ++++++.++..... ++. .+ ....++.+.+
T Consensus 295 ~~G~G~~e~~g~------~~di~ii~~TLsKA~G~~G---Gfi~g-s~~~~~~l~~~~~~~ifStalpp~~aaa~laal- 363 (476)
T PLN02955 295 ENGGGVAEEFNC------EADVDLCVGTLSKAAGCHG---GFIAC-SKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAV- 363 (476)
T ss_pred CCCCcHHHHhCC------CCCCcEEEEeCccchhccC---ceeec-HHHHHHHHHHhCCCCeecccccHHHHHHHHHHH-
Confidence 42 33332222 2577899999999998665 99888 77888988865443 222 22 2222222222
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
+.+.. -..++++++++.+++.+. .|+.+. ..++.+.+... ....++.+.|++ +||.+.+-.+.
T Consensus 364 --~l~~~-~~~~r~~L~~n~~~fr~~---~G~~~~----sPI~pI~ig~~------~~a~~~~~~L~~-~Gi~v~~i~yP 426 (476)
T PLN02955 364 --VVARK-EKWRRKAIWERVKEFKAL---SGVDIS----SPIISLVVGNQ------EKALKASRYLLK-SGFHVMAIRPP 426 (476)
T ss_pred --HHHhc-CHHHHHHHHHHHHHHHHh---cCCCCC----CCEEEEEeCCH------HHHHHHHHHHHH-CCCEEEEECCC
Confidence 21111 134667788888888874 366531 22233333332 244567888555 79999876654
Q ss_pred CCC-CCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 300 HCI-EPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~~~-~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
... ....+|++++. .+++|++++++.|.++.+.
T Consensus 427 tVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 427 TVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred CCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence 332 24579999986 6999999999999987653
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=184.78 Aligned_cols=282 Identities=20% Similarity=0.241 Sum_probs=202.2
Q ss_pred hhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHh---cCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCc
Q 019899 5 MSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCL---ADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 5 ~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l---~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~ 77 (334)
.++.+++.+++++ ++|++++|++.+++.++.++ .++||+|++.+..|++....+. ...|.++..++.+ .+.
T Consensus 48 ~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~--~~~ 125 (371)
T PF00266_consen 48 AREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD--PGG 125 (371)
T ss_dssp HHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG--TTS
T ss_pred HHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhcccccc--ccc
Confidence 3445566667788 89999999999999999999 7899999999999998774433 1568999999874 445
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
.+|++++++++++ +++++++++.+|.||..+| +++|.++|+++|+++++|.+++. +.....+..
T Consensus 126 ~~~~~~~~~~l~~------~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~----g~~~id~~~--- 189 (371)
T PF00266_consen 126 SLDLEDLEEALNP------DTRLVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQSA----GCVPIDLDE--- 189 (371)
T ss_dssp SCSHHHHHHHHHT------TESEEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTT----TTSS--TTT---
T ss_pred hhhhhhhhhhhcc------ccceEEeecccccccEEee---eceehhhhhccCCceeEechhcc----ccccccccc---
Confidence 7899999999975 9999999999999999999 99999999999999999999875 222223221
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-----------------------cCCChHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-----------------------CSISAPTQRLL 214 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 214 (334)
.+.++++.|.+|.+|.+| +|+++. +++..++++..... ++.+.....++
T Consensus 190 -----~~~D~~~~s~~Kl~gp~G--~g~l~v-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l 261 (371)
T PF00266_consen 190 -----LGADFLVFSSHKLGGPPG--LGFLYV-RPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYAL 261 (371)
T ss_dssp -----TTESEEEEESTSTTSSST--EEEEEE-EHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHH
T ss_pred -----cccceeeecccccCCCCc--hhhhee-hhhhhhccccccccccccccccchhcccccccccccccceeeehhhhH
Confidence 567789999999445444 799998 77777777432111 13344444555
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCC----CceeEEeeecCCcCCCCChhhHHHHHHHHHHhc
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IRCSES----SAGLYCWADMSGLIPSYSEKGELELWDKLLNIA 289 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (334)
..+++... +..+++..++..+..+++.+.|++.+ +.+..+ ..+-.+.+.++.. +..++... |+++
T Consensus 262 ~~al~~~~--~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~-L~~~ 331 (371)
T PF00266_consen 262 NEALKLLE--EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-------DADDVVKY-LEER 331 (371)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-------SHHHHHHH-HHHH
T ss_pred HHHHhhhh--ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-------CHHHHHHH-Hhhc
Confidence 55554321 33457778888999999999998874 444332 2233344555442 34577777 4445
Q ss_pred CeEEcCCCCcCC------CCCCeEEEEecC-CCcccHHHH
Q 019899 290 KINVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLV 322 (334)
Q Consensus 290 gi~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~ 322 (334)
||.+..|..+.. .-.+.+|+|++. .|++|++++
T Consensus 332 ~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 332 GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 999998877641 123799999996 588999874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=183.40 Aligned_cols=284 Identities=17% Similarity=0.138 Sum_probs=184.8
Q ss_pred CCcEEEecCcHHHHHHHHHHhc----------CCCCeEEecCCCCCChhhh-hhhccCcEEEE---EeCCC--CCCcccc
Q 019899 17 PSQIVLTAGATPAVEILCFCLA----------DHGNALLVPSPYYPGFDRD-IRFRTGVELIP---VHCRS--TDNFAFS 80 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~----------~~gd~vl~~~p~~~~~~~~-~~~~~g~~v~~---v~~~~--~~~~~~~ 80 (334)
.+.+++++++++|+..++..+. ..+++|++.+.+|.+.... +. ..+..... .+... ..-...|
T Consensus 88 ~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d 166 (400)
T PTZ00125 88 YDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACS-ASTDPKCYNNFGPFVPGFELVDYND 166 (400)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHh-hcCCcchhccCCCCCCCceEeCCCC
Confidence 4689999999999999998763 1346788888777665433 33 22211110 00000 0001137
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCH-HHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPR-ETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~-~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
++++++.++. .++++|++..++||+|.+++. +.+++|.++|++||+++|+||+|.++.+.|..+.. ...
T Consensus 167 ~~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~--~~~--- 236 (400)
T PTZ00125 167 VEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAH--DHE--- 236 (400)
T ss_pred HHHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHH--Hhc---
Confidence 8999998862 278988888779999999975 45999999999999999999999876555432111 111
Q ss_pred ccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
+..++ +.++||.++ .| .|+||+++ ++++.+.+... ...++.++..+.++.+.++..+ ++ ...++++
T Consensus 237 ~~~pd----~~~~sK~l~-~g~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~--~~---~~~~~~~ 305 (400)
T PTZ00125 237 GVKPD----IVLLGKALS-GGLYPISAVLA-NDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLK--EE---KLAENAQ 305 (400)
T ss_pred CCCCC----EEEEccccc-CCCcCcEEEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--hc---CHHHHHH
Confidence 11122 235789998 55 49999998 78888877543 3345677888877766654321 11 1233444
Q ss_pred HHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec
Q 019899 237 KLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT 312 (334)
Q Consensus 237 ~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~ 312 (334)
++.+++.+.|++. ++.......|.++|+.++.... .+..++...|+ ++||.+.|+. ++++|++++
T Consensus 306 ~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~~~----~~~~~~~~~l~-~~Gv~v~~~~------~~~lRi~~~ 374 (400)
T PTZ00125 306 RLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDG----VNAWDLCLKLK-ENGLLAKPTH------DNIIRFAPP 374 (400)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEecccEEEEEEEccCcc----hHHHHHHHHHH-HCCeEEeecC------CCEEEEECC
Confidence 4555555555543 3221112356777787764211 23457888865 5799998753 478999976
Q ss_pred C-CCcccHHHHHHHHHHHHHHc
Q 019899 313 S-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 313 ~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
. .+++++++++++|.+++++.
T Consensus 375 ~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 375 LVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 4 69999999999999998764
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=180.86 Aligned_cols=282 Identities=17% Similarity=0.238 Sum_probs=184.2
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
-+.+.++...+ .++.+++++++.++..++.+++++||+|+++...|++... .++ ..|.+++.++. .
T Consensus 74 ~le~~lA~l~g--~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~-~~G~~v~~vd~-------~ 143 (403)
T PRK07810 74 MFEERLRLIEG--AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILP-RWGVETVFVDG-------E 143 (403)
T ss_pred HHHHHHHHHhC--CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHH-HcCcEEEEECC-------C
Confidence 34455554444 4588999999999999999999999999999877755443 344 57999999874 3
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ ++++|++++|+||+|.+.| +++|+++|+++|+++++|++|+...+. .++ .
T Consensus 144 d~~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~----~~~----~-- 204 (403)
T PRK07810 144 DLSQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQ----RGL----P-- 204 (403)
T ss_pred CHHHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccC----Chh----h--
Confidence 78999999976 7899999999999999999 999999999999999999999753321 111 1
Q ss_pred ccCCCcEEEEecccccCCCCCceE-EEEeecCHHHH-HHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVL-AAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.+.++++.|++|.++..|.++ |++++ +++.. +.++..... ...++..+..+...++.. ..+.++.
T Consensus 205 ---~gaDivv~S~tK~l~g~g~~~gG~v~~-~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl-------~~R~~~~ 273 (403)
T PRK07810 205 ---LGADVVVYSGTKHIDGQGRVLGGAILG-DREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETL-------ALRVRHS 273 (403)
T ss_pred ---cCCcEEEccCCceecCCcCceeEEEEe-ChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcH-------HHHHHHH
Confidence 456788999999998778776 77777 54443 345443222 245555555555555442 3344455
Q ss_pred HHHHHHHHHHHHhC-CCccc-------CC----------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe------
Q 019899 236 KKLYDSFVAGLKQL-GIRCS-------ES----------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI------ 291 (334)
Q Consensus 236 ~~~~~~~~~~l~~~-g~~~~-------~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi------ 291 (334)
.++...+.+.|+++ .+..+ .| ..|-.+.+++....+. ..+...++++. ++-..+
T Consensus 274 ~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~-~~~~~~~f~~~-l~l~~~~~slG~ 351 (403)
T PRK07810 274 NASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDA-AKKRAFEVLDK-LRVIDISNNLGD 351 (403)
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCc-CHHHHHHHHHh-CCceEEeccCCC
Confidence 56666677777765 23211 01 2343455666532110 11222344443 221221
Q ss_pred ----EEcCCCCcCC-----------CCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 292 ----NVTPGSACHC-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 292 ----~v~~g~~~~~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
...|+...+. ..++-+|+|++ .|+.+.+++.|.+++
T Consensus 352 ~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svG---lE~~~dli~dl~~Al 402 (403)
T PRK07810 352 AKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVG---LEDTDDLIADLDRAL 402 (403)
T ss_pred CcceeeCCCccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHhh
Confidence 2223221110 02357999999 778888999888876
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=183.02 Aligned_cols=278 Identities=13% Similarity=0.114 Sum_probs=188.7
Q ss_pred CCCCCCCCcEEEecCcHHHHHHHHHHhcCCC---CeEEecCCCCCChhhhh----hhccCcEE----EEEeCCCCCCccc
Q 019899 11 QAVSFDPSQIVLTAGATPAVEILCFCLADHG---NALLVPSPYYPGFDRDI----RFRTGVEL----IPVHCRSTDNFAF 79 (334)
Q Consensus 11 ~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~g---d~vl~~~p~~~~~~~~~----~~~~g~~v----~~v~~~~~~~~~~ 79 (334)
+.+++++++|++++|+|++++.++.++++++ +.|++++.+|++....+ + ..|.++ +.++. ++++.+
T Consensus 80 ~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~-~~g~~~~~~~~~~~~--~~~g~~ 156 (406)
T TIGR01814 80 RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQ-LHGLTVEESMVQIEP--REEETL 156 (406)
T ss_pred cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHH-hcCCCcccceEEecc--CCCCcc
Confidence 5678889999999999999999999886554 36888889999854433 3 568776 34544 344567
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++++++.++.. ..++++|++++++|+||.+.| +++|.++|+++|+++++|++++. |....++. .
T Consensus 157 ~~~~l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~----G~~~id~~---~-- 221 (406)
T TIGR01814 157 RLEDILDTIEKN---GDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAV----GNVPLDLH---D-- 221 (406)
T ss_pred CHHHHHHHHHhc---CCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEccccc----CCcccccc---c--
Confidence 899999888632 237899999999999999999 99999999999999999999986 22222222 1
Q ss_pred ccCCCcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHh-h------------------------cccCCChHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKL-T------------------------RFCSISAPTQRL 213 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~ 213 (334)
.+.++++.|.+|+++ .+| .|..+. ++.. ..+... . ..++.+.....+
T Consensus 222 ---~gvD~~~~s~hK~l~g~pG--~~l~v~-~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~ 294 (406)
T TIGR01814 222 ---WGVDFACWCTYKYLNAGPG--AGAFVH-EKHA-HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAA 294 (406)
T ss_pred ---CCCCEEEEcCccccCCCCC--eEEEEe-hhhh-hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHH
Confidence 567889999999884 344 333333 3222 222110 0 012344455555
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCc----eeEEeeecCCcCCCCChhhHHHHHHH
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-----GIRCSESSA----GLYCWADMSGLIPSYSEKGELELWDK 284 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (334)
+..+++... +..+++.+++.....+++.+.|++. ++++..+.. +..+.+.+| . +..++.+.
T Consensus 295 l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~--~------~~~~~~~~ 364 (406)
T TIGR01814 295 LRGSLDIFD--QAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP--V------PGKAVFQA 364 (406)
T ss_pred HHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec--C------CHHHHHHH
Confidence 555554321 2224666777888888888888764 366554421 223445555 1 23567777
Q ss_pred HHHhcCeEEcCCCCcCCCCCCeEEEEe-c-CCCcccHHHHHHHHHHHH
Q 019899 285 LLNIAKINVTPGSACHCIEPGWFRCCF-T-SLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 285 ll~~~gi~v~~g~~~~~~~~~~iRi~~-~-~~~~~~l~~~l~~l~~~~ 330 (334)
| .++||.+... .++.+|+|+ + +.+++|++++++.|++++
T Consensus 365 L-~~~gi~v~~~------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 365 L-IKRGVIGDKR------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred H-HHCCEEEecc------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 4 5579987532 236899998 4 369999999999999875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-22 Score=176.53 Aligned_cols=281 Identities=16% Similarity=0.191 Sum_probs=182.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh--hccCcEEEEEeCCCCCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR--FRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~--~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+.+.++...+ .+++++++++++|+..++.+++++||+|+++.|+|.++...++ ...|.+++.++ +|++
T Consensus 58 lE~~lA~l~g--~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~--------~d~~ 127 (385)
T PRK08574 58 LEEALAKLEG--GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY--------PSTE 127 (385)
T ss_pred HHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC--------CCHH
Confidence 4445554444 4678899999999999999999999999999999999877664 14577776654 3578
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++++++++. ++++|++.+|+||||.++| +++|+++|+++|+++++|++|+.... ..++ .
T Consensus 128 ~l~~~i~~~-----~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~----~~~l----~----- 186 (385)
T PRK08574 128 DIIEAIKEG-----RTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLL----YRPL----R----- 186 (385)
T ss_pred HHHHhcCcc-----CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc----CChh----h-----
Confidence 888888642 6899999999999999999 88999999999999999999864211 1111 1
Q ss_pred CCcEEEEecccccCCCCCce-EEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFR-TGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r-~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
.+.+++++|++|.++.+|-. .|++++.++++.+.++.....++ .++.....+..-++. +..+.++..+++
T Consensus 187 ~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t-------L~~R~~~~~~na 259 (385)
T PRK08574 187 HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT-------LEVRFERQCRNA 259 (385)
T ss_pred hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHHHHHH
Confidence 45678999999999756644 47677667888888776554332 333333333333322 233344555567
Q ss_pred HHHHHHHHhCC-Cc---ccC--------------C--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 240 DSFVAGLKQLG-IR---CSE--------------S--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 240 ~~~~~~l~~~g-~~---~~~--------------~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
..+.+.|+.+. ++ ++. . ..|-.+.+++... .+....+.+. ++-..+...-|...
T Consensus 260 ~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~-----~~~~~~~~~~-l~l~~~~~s~G~~~ 333 (385)
T PRK08574 260 MAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGG-----RDAVLKFLRS-LKLIKPSPSLGGVE 333 (385)
T ss_pred HHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCC-----HHHHHHHHHc-CCcceEccCCCCCc
Confidence 77777777652 21 110 0 1233445666421 1222334443 22222222222221
Q ss_pred CC---------------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 300 HC---------------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~~---------------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
.. ..++-+|+|++ -|+.+.+++.|.+++++
T Consensus 334 sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG---lE~~~dli~dl~~al~~ 384 (385)
T PRK08574 334 SLATYPVKSAASPIPEEDRKALGITEDLVRLSVG---LEDVEDLIEDLDQALGS 384 (385)
T ss_pred ceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhc
Confidence 00 01357999999 67788899999988864
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=178.97 Aligned_cols=280 Identities=16% Similarity=0.196 Sum_probs=187.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+.+.+++..+. ++++++++++.++..++. ++++||+|+++.+.|.++...+. ...|.+++.++. .|+
T Consensus 52 le~~la~l~g~--~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-------~d~ 121 (378)
T TIGR01329 52 LESLLAKLDKA--DRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT-------TDL 121 (378)
T ss_pred HHHHHHHHhCC--CcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCC-------CCH
Confidence 34444444443 677778888889988776 77999999999999998765433 147999999985 278
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++++|+||+|.+.+ +++|+++|+++|+++|+|++|... ....++ .
T Consensus 122 ~~le~~i~~------~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~----~~~~~l----~---- 180 (378)
T TIGR01329 122 DKVKAALGP------KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSP----LLCNPL----E---- 180 (378)
T ss_pred HHHHHhcCc------CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccc----ccCChh----h----
Confidence 899998875 8999999999999999999 999999999999999999997531 111122 1
Q ss_pred CCCcEEEEecccccCCC-CCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSL-PGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~-~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+.+++++|++|+++. .+...|+++++++.+.++++...... ..++.....+..-++. +..+.++..++
T Consensus 181 -~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t-------l~~R~e~~~~n 252 (378)
T TIGR01329 181 -LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT-------LAIRIEKQQEN 252 (378)
T ss_pred -cCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC-------HHHHHHHHHHH
Confidence 3557899999998853 35778999886777767776655432 2333333222222222 23344455556
Q ss_pred HHHHHHHHHhCC-Cc--------------cc---CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 239 YDSFVAGLKQLG-IR--------------CS---ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 239 ~~~~~~~l~~~g-~~--------------~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
...+.+.|+++. +. +. ....|-.+.+++.. .....++.+. ++..+|.++-|....
T Consensus 253 a~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~------~~~~~~~~~~-L~~~~i~~s~G~~~s 325 (378)
T TIGR01329 253 ARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS------VALSKRLVEA-TKLFSITVSFGSVNS 325 (378)
T ss_pred HHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC------HHHHHHHHHh-CcCcccccCCCCCCc
Confidence 666666666541 11 00 01122344456621 1224577777 576787777666431
Q ss_pred C---------------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 301 C---------------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 301 ~---------------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
. ..++-+|+|++ -|+.+++++.|.+++++.
T Consensus 326 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG---lE~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 326 LISMPCFMSHASIPAEVREERGLPEDLVRLSVG---IEDVDDLISDLDIAFVTA 376 (378)
T ss_pred eeeCCCccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHHhc
Confidence 1 01357999999 778888999999988763
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=183.51 Aligned_cols=295 Identities=12% Similarity=0.062 Sum_probs=189.2
Q ss_pred CcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcE--------------EEE--EeCCCCCCccc
Q 019899 18 SQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVE--------------LIP--VHCRSTDNFAF 79 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~--------------v~~--v~~~~~~~~~~ 79 (334)
+.+++++++++|+..++.... .++.+|+...++|.+....+. ..+.. +.. +|... .+...
T Consensus 103 ~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~ 180 (425)
T PRK08088 103 KKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTL-ALTGKVNPYSAGMGLMPGHVYRALYPCPL-HGVSE 180 (425)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHH-HhhCCCCccccCCCCCCCCcEEcCCCccc-cCccH
Confidence 578888888888777765542 233457777999988765544 32211 111 22111 11111
Q ss_pred --cHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 80 --SITALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 80 --~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
+++.+++.+++. ....++.++++... ++++....+.+.+++|.++|++||+++|+||+|.++.+.+. ...+ .
T Consensus 181 ~~~~~~l~~~l~~~-~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~---~ 255 (425)
T PRK08088 181 DDAIASIERIFKND-AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAM---E 255 (425)
T ss_pred HHHHHHHHHHHHhc-cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhHH---h
Confidence 145577777531 11235665555433 55666678999999999999999999999999998655432 1111 1
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
. .+.+..+.||||.++ +|+|+||+++ ++++++.+... ...++.+++.+.++..+++..+. ++.+.+.++.
T Consensus 256 ~-----~~~~pdi~s~sK~l~-~G~rig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~ 327 (425)
T PRK08088 256 Q-----MGVAADLTTFAKSIA-GGFPLAGVTG-RAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ-ENLLQKANAL 327 (425)
T ss_pred h-----cCCCCCEEEEecccc-CCCcceeeEe-cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 1 233344789999998 9999999999 88888887643 33466789999999999976542 3444555544
Q ss_pred HHHHHHHHHHHHHhCCC-cccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEe
Q 019899 235 IKKLYDSFVAGLKQLGI-RCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCF 311 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~ 311 (334)
.+...+.+.+.+++.+. ....+. |+++|+.+.+..+. .......++...++ ++||.+.|+..+ ++.+|+++
T Consensus 328 ~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~-~~Gv~~~~~~~~----~~~iRl~~ 401 (425)
T PRK08088 328 GEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARAR-DKGLILLSCGPY----YNVLRILV 401 (425)
T ss_pred HHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHH-hCCCEEecCCCC----CCEEEEEC
Confidence 44444444444344433 112222 88899998543221 11223456777754 479988775443 47899999
Q ss_pred cC-CCcccHHHHHHHHHHHHHHc
Q 019899 312 TS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 312 ~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+. .+++++++++++|.+++++.
T Consensus 402 ~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 402 PLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred CCCcCHHHHHHHHHHHHHHHHhh
Confidence 84 68999999999999998764
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=182.37 Aligned_cols=283 Identities=14% Similarity=0.136 Sum_probs=193.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhhhhhccCcEEEE---EeCCC--CCCccccHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRDIRFRTGVELIP---VHCRS--TDNFAFSITA 83 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~---v~~~~--~~~~~~~~~~ 83 (334)
.+.+++++++++|+..++.... .++.+|+..+.+|.+.........+..... .++.+ ......|++.
T Consensus 96 ~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 175 (406)
T PRK12381 96 ADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNS 175 (406)
T ss_pred CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHH
Confidence 4799999999999999988752 245678888888887654332123321110 01000 0001247888
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCC--CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNII--PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~--~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++.+++ ++++|++ .|.+++|-++ |.+.+++|.++|++||+++|+||+|.++.+.|..+ ..... +.
T Consensus 176 l~~~l~~------~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~-~~~~~----~v 243 (406)
T PRK12381 176 ASALIDD------QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHY----GV 243 (406)
T ss_pred HHHhccC------CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh-hhHhh----CC
Confidence 9988864 6776666 6988887654 68899999999999999999999998876655422 11111 11
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
.++ +.|++|.++ +|+|+||+++ ++++.+.+... ...++.+++.+.++.+.++.. + ..+..++++++.
T Consensus 244 ~pD----i~t~sK~l~-gG~~ig~~~~-~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~--~~~~~~~~~~~~ 312 (406)
T PRK12381 244 TPD----VLTTAKALG-GGFPIGAMLT-TEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI---N--TPEMLNGVKQRH 312 (406)
T ss_pred CCC----EEEehhhhh-CCCceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHH
Confidence 122 358999998 8999999998 78888887642 334577888888888876432 1 124567777888
Q ss_pred HHHHHHHHhCC--Cccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-C
Q 019899 240 DSFVAGLKQLG--IRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-L 314 (334)
Q Consensus 240 ~~~~~~l~~~g--~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~ 314 (334)
+++.+.|++.+ ..+. ....|.++++.++.... .....+... +.++||.+.+.. ++++|++++. .
T Consensus 313 ~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~----~~~~~~~~~-l~~~Gv~v~~~g------~~~lRl~p~~~~ 381 (406)
T PRK12381 313 DWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQISQE-AAKAGVMVLIAG------PNVVRFAPALNI 381 (406)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchh----hHHHHHHHH-HHHCCcEEeeCC------CCEEEEeCCccC
Confidence 88888887753 2211 22347778888765311 123456666 556899987532 4689999885 6
Q ss_pred CcccHHHHHHHHHHHHHHc
Q 019899 315 THEDIPLVIERIQKVAETC 333 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~~ 333 (334)
+++++++++++|.+++++.
T Consensus 382 t~~~i~~~~~~l~~~l~~~ 400 (406)
T PRK12381 382 SEEEITTGLDRFARACERF 400 (406)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-22 Score=180.13 Aligned_cols=289 Identities=15% Similarity=0.157 Sum_probs=175.2
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----CCCC-eEEecCCCC-CChh--hhhhhccCcEEEEEeCCCCCC
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----DHGN-ALLVPSPYY-PGFD--RDIRFRTGVELIPVHCRSTDN 76 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----~~gd-~vl~~~p~~-~~~~--~~~~~~~g~~v~~v~~~~~~~ 76 (334)
+++.++..++. +.++++++++++..++..+. .+++ .|++.+..| ++.. .... ..+.+++.+|.
T Consensus 96 l~~~la~~~~~---~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~-~~~~~v~~~~~----- 166 (402)
T PRK07505 96 LEEALSELFGA---SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGIC-ADETEVETIDH----- 166 (402)
T ss_pred HHHHHHHHhCC---CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhh-hcCCeEEEeCC-----
Confidence 44445444443 55555566678876665432 2222 355555444 3321 1222 23567777774
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc-chhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF-VSMAEI 155 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~-~~~~~~ 155 (334)
.|++++++++++ +++++++++|+||+|.+.+ +++|.++|+++++++|+||+|+...++.... .....+
T Consensus 167 --~d~~~l~~~~~~------~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~ 235 (402)
T PRK07505 167 --NDLDALEDICKT------NKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSEL 235 (402)
T ss_pred --CCHHHHHHHHhc------CCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHc
Confidence 378999988865 5688999999999999999 8888899999999999999986544432211 111111
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc--C--CChHHHHHHHHhhCChHHHHHHHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--S--ISAPTQRLLISMLSDTKFIQEYLETN 231 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (334)
.. ..+++++++.|+||.++.+| ||+++.++++.+.++.....+ + .++....++...++.. .++++.++
T Consensus 236 ~~---~~~d~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~--~~~~~~~~ 307 (402)
T PRK07505 236 DY---RLNERTIIAASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIH--LSEELDQL 307 (402)
T ss_pred CC---CCCCCeEEEEechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHH--hccCcHHH
Confidence 10 01677899999999998665 887755788888887654443 2 3344555555544311 12222334
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEE
Q 019899 232 KRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCC 310 (334)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~ 310 (334)
.++++++...+.+.+... .....-++.++.++. ..+..++.+.|+ ++||.+.+...+... .++++|++
T Consensus 308 ~~~l~~~~~~~~~~~~~~----~~g~~~~i~~~~~~~------~~~~~~~~~~l~-~~Gi~v~~~~~p~~~~~~~~lRi~ 376 (402)
T PRK07505 308 QQKLQNNIALFDSLIPTE----QSGSFLPIRLIYIGD------EDTAIKAAKQLL-DRGFYTSPVFFPVVAKGRAGLRIM 376 (402)
T ss_pred HHHHHHHHHHHHHHHHhc----CCCCCCCEEEEEeCC------HHHHHHHHHHHH-HCCCeEeeecCCCCCCCCceEEEe
Confidence 444555444433322111 111111222333221 123457888865 589999987433221 23689999
Q ss_pred ecC-CCcccHHHHHHHHHHHHHH
Q 019899 311 FTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 311 ~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++. .++++++++++.|.+++++
T Consensus 377 ~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 377 FRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred cCccCCHHHHHHHHHHHHHHHHh
Confidence 985 5999999999999998865
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=182.85 Aligned_cols=280 Identities=18% Similarity=0.175 Sum_probs=188.2
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC---------CC-CeEEecCCCCCChhhhhhhccC-------------
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD---------HG-NALLVPSPYYPGFDRDIRFRTG------------- 63 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~---------~g-d~vl~~~p~~~~~~~~~~~~~g------------- 63 (334)
+.+....+ .+.+++++++++|+..++..+.. +| ++|++...+|.+....+. ..+
T Consensus 90 ~~l~~~~~--~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~-~~~~~~~~~~~~~~~~ 166 (401)
T PRK00854 90 EELAALTG--SHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIV-GFSTDPDARGGFGPFT 166 (401)
T ss_pred HHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHH-hccCCccccccCCCCC
Confidence 33444333 46899999999999999988732 23 678877777765433222 111
Q ss_pred cEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEEEecccccc
Q 019899 64 VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 64 ~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
.++..++ ..|++++++.+.+ ++++|++.+|+||+|.+.+.+ .+++|.++|++||+++|+||+|.++
T Consensus 167 ~~~~~~~-------~~d~~~le~~i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~ 233 (401)
T PRK00854 167 PGFRVVP-------FGDAEALEAAITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGL 233 (401)
T ss_pred CCeEEeC-------CCCHHHHHHHhCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 1223333 2478999998865 789999999999999999854 5999999999999999999999865
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhC
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLS 219 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 219 (334)
.+.|..+. . ... +..++ +.+ ++|+++ .| +|+|++++ ++++.+.+... ...++.+++.+.++.+.++
T Consensus 234 g~~g~~~~-~-~~~---g~~~D--~~~--~~K~l~-gg~~~ig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~ 302 (401)
T PRK00854 234 GRTGKLLA-E-EHE---GIEAD--VTL--IGKALS-GGFYPVSAVLS-NSEVLGVLKPGQHGSTFGGNPLACAVARAALK 302 (401)
T ss_pred CCCchHhH-H-hhc---CCCCC--EEE--eccccc-CCccCeEEEEE-cHHHHhcccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 55442111 1 111 11122 222 469997 55 69999998 78888877632 2345668888888777775
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS---ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
..+ + ....+.++++.+++.+.|++++.... .+.+.+ +.+.+... .....++.+.|++ +||.+.+.
T Consensus 303 ~l~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~-~~i~~~~~-----~~~~~~~~~~L~~-~GV~v~~~ 370 (401)
T PRK00854 303 VLT---E--EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLM-LAVELEPE-----AGGARQYCEALKE-RGLLAKDT 370 (401)
T ss_pred HHH---H--cCHHHHHHHHHHHHHHHHHhhccCceEEEeccceE-EEEEEecC-----chhHHHHHHHHHH-CCeEEecC
Confidence 422 1 22456777788888888887654322 333343 43444221 1134678888665 79998652
Q ss_pred CCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 297 SACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
..+++|++++. .+++++++++++|++++.
T Consensus 371 ------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 371 ------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred ------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 14689999864 699999999999998864
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=183.14 Aligned_cols=292 Identities=14% Similarity=0.156 Sum_probs=186.8
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhc--cCcEEEEEeCCC-------CCCc---cccHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFR--TGVELIPVHCRS-------TDNF---AFSIT 82 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~--~g~~v~~v~~~~-------~~~~---~~~~~ 82 (334)
.+++++++|+++|+..++.... ..+++|+..+++|.++...+... .+......+..+ .+.. ..|++
T Consensus 104 ~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 183 (423)
T TIGR00713 104 VEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLE 183 (423)
T ss_pred ccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHH
Confidence 3689999999999999887642 35689999999999875433201 111111111100 0000 12789
Q ss_pred HHHHHHHHHHHcCCceeEEEEe-CCCCCcccCCC-HHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 83 ALDQAFNQARKRGVKVRGILIC-NPANPVGNIIP-RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~-~p~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++. ..++++|++. .|+| +|.+.+ .+.+++|.++|++||+++|+||+|.++.++.........+
T Consensus 184 ~l~~~i~~~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~----- 254 (423)
T TIGR00713 184 ALEEVFEEY---GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGV----- 254 (423)
T ss_pred HHHHHHHHc---CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCC-----
Confidence 999988742 2367777775 5566 798887 5889999999999999999999998874422111111111
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-----hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.++ +.++||.++ +|+|+||+++ ++++.+.+... ...++.+++.+.++.+.++..+. +...++.++..
T Consensus 255 -~pD----i~t~sK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~ 326 (423)
T TIGR00713 255 -EPD----LTTLGKIIG-GGLPVGAFGG-RREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELA 326 (423)
T ss_pred -Ccc----hhhhhhhhc-CCCceeeeeE-HHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 122 347999999 9999999998 78888888632 23456788888887777753221 12345555566
Q ss_pred HHHHHHHHHHHHhCCCccc-CCCceeEE-eeecCCcCCC-----CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEE
Q 019899 236 KKLYDSFVAGLKQLGIRCS-ESSAGLYC-WADMSGLIPS-----YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFR 308 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g~~~~-~~~~g~~~-~~~~~~~~~~-----~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iR 308 (334)
...++.+.+.++++++... ...++++. ++..+...+. ........+...+++ +||.+.++. + +.+|
T Consensus 327 ~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~-~-----~~~~ 399 (423)
T TIGR00713 327 KRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPSQ-F-----EACF 399 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecCC-c-----ccee
Confidence 6666667777777766543 23344332 2332211100 001112356677665 899986542 2 3478
Q ss_pred EEecCCCcccHHHHHHHHHHHHHHc
Q 019899 309 CCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 309 i~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+++. .+++++++++++|.++++++
T Consensus 400 l~~~-~t~~~i~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 400 LSAA-HTEEDIENTIEAAEEVFAEL 423 (423)
T ss_pred eECC-CCHHHHHHHHHHHHHHHhhC
Confidence 8877 79999999999999998753
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-22 Score=177.45 Aligned_cols=278 Identities=14% Similarity=0.122 Sum_probs=186.4
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
.+++.+++..+. +..+++++++.|+..++.+++++||+|+++.+.|.+... .+. ..|.+++.++. .
T Consensus 67 ~le~~lA~l~g~--~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~-~~G~~v~~vd~-------~ 136 (389)
T PRK05968 67 AFEEMLAKLEGA--EDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILK-RMGVEVDYVDG-------R 136 (389)
T ss_pred HHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH-HcCceEEEeCC-------C
Confidence 345555555543 345666777889999999999999999999999987543 344 57999988874 2
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++ + ++++|++++|+||++.. .++++|+++|+++|+++|+|++|+...+.. +. .
T Consensus 137 d~~~l~~~i-~------~tklV~ie~pt~~~~~~---~dl~~i~~la~~~gi~vivD~a~a~~~~~~----p~----~-- 196 (389)
T PRK05968 137 DEEAVAKAL-P------GAKLLYLESPTSWVFEL---QDVAALAALAKRHGVVTMIDNSWASPVFQR----PI----T-- 196 (389)
T ss_pred CHHHHHHhc-c------cCCEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCcchhccC----ch----h--
Confidence 788888887 3 67899998777666555 559999999999999999999987543211 11 1
Q ss_pred ccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhcc---cCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRF---CSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.+.++++.|++|.++.+| .+.|+++. ++++.+.++..... ...++.....+...++.. ..+.++.
T Consensus 197 ---~g~Divv~S~tK~l~g~~~~~gG~i~~-~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl-------~~r~~~~ 265 (389)
T PRK05968 197 ---LGVDLVIHSASKYLGGHSDTVAGVVAG-SKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL-------PLRMKAH 265 (389)
T ss_pred ---cCCcEEEeeccccccCCCCeEEEEEEE-CHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH-------HHHHHHH
Confidence 345688889999997554 57888886 78888877754321 234554444444444332 3334445
Q ss_pred HHHHHHHHHHHHhC-CCcccC-C-----------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-
Q 019899 236 KKLYDSFVAGLKQL-GIRCSE-S-----------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC- 301 (334)
Q Consensus 236 ~~~~~~~~~~l~~~-g~~~~~-~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~- 301 (334)
.++++.+.+.|+++ +++.+. | ..|-++.+++.. ..+..++++. |+..++.+.-|..+..
T Consensus 266 ~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~------~~~~~~f~~~-L~~~~~~~s~G~~~slv 338 (389)
T PRK05968 266 EASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE------GIDVRAFADA-LKLFRLGVSWGGHESLV 338 (389)
T ss_pred HHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC------HHHHHHHHHh-CCccEEecCCCCCCcee
Confidence 55677777888776 444332 2 112234456642 1244577777 5656776665555440
Q ss_pred --------------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 302 --------------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 --------------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
..++.+|+|++ -|+.+.+++.|.+++++
T Consensus 339 ~p~~~~~~~~~~~~~~~~~gi~~~liR~SvG---lE~~~dl~~dl~~al~~ 386 (389)
T PRK05968 339 VPAEVVLQQKAQPNSAARFGVSPRSVRLHVG---LEGTEALWADLEQALAA 386 (389)
T ss_pred eeCcccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHHH
Confidence 01467999999 66777788888888765
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=178.95 Aligned_cols=276 Identities=15% Similarity=0.122 Sum_probs=188.2
Q ss_pred cEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCC-hhhhhhhccCcEEEE--E--eCCC-CCCccccHHHHHHHHHH
Q 019899 19 QIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPG-FDRDIRFRTGVELIP--V--HCRS-TDNFAFSITALDQAFNQ 90 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~-~~~~~~~~~g~~v~~--v--~~~~-~~~~~~~~~~l~~~l~~ 90 (334)
.+++++++++++..++.... .++++|++.+.+|.+ ....+. ..|.+... + .... ......|++.+++.+++
T Consensus 86 ~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~ 164 (375)
T PRK04260 86 LAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMS-ATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNK 164 (375)
T ss_pred EEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHh-ccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCC
Confidence 46899999999998887752 346678888777664 334433 32221110 0 0000 00012478899888754
Q ss_pred HHHcCCceeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch-hhhhhhccccCCCcEEE
Q 019899 91 ARKRGVKVRGILICNPANPVGNIIP-RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS-MAEILEAEEVDKDRVHI 168 (334)
Q Consensus 91 ~~~~~~~~~~i~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 168 (334)
++.+|++..++|++|.+.+ .+.++++.++|+++|+++|+||+|.++...+..+.. ...+ .++
T Consensus 165 ------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~------~pd---- 228 (375)
T PRK04260 165 ------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI------EPD---- 228 (375)
T ss_pred ------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC------CCC----
Confidence 6778888888999999765 567999999999999999999999876544432111 1112 122
Q ss_pred EecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 169 IYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246 (334)
Q Consensus 169 ~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (334)
+.||||.++ +|+|+||+++ ++++.+.+.. ....++.+++.+.++.++++..+. ++..++.++..+..++.+.+.+
T Consensus 229 i~t~sK~l~-~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 305 (375)
T PRK04260 229 IFTLAKGLA-NGVPVGAMLA-KSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKAL 305 (375)
T ss_pred EEEeccccc-CCcceEEEEE-cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 348999998 8999999999 7788777754 334567788999988888865432 3445566666666666666666
Q ss_pred HhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHH
Q 019899 247 KQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIER 325 (334)
Q Consensus 247 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~ 325 (334)
.+.+.-...+..|+++|++++. +..++.+. +.++||.+.|.. .+.+|++++. .+++++++++++
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~-l~~~Gi~v~~~~------~~~lR~~~~~~~t~~~i~~~l~~ 370 (375)
T PRK04260 306 QDKETVTTVRGLGYMIGIETTA--------DLSQLVEA-ARDKGLIVLTAG------TNVIRLLPPLTLTKEEIEQGIAI 370 (375)
T ss_pred hhCCCeeEEeccceEEEEEecC--------cHHHHHHH-HHhCCCEEecCC------CCEEEEcCCCccCHHHHHHHHHH
Confidence 6553211222368889998843 23577777 445899997642 4679999964 699999999999
Q ss_pred HHHH
Q 019899 326 IQKV 329 (334)
Q Consensus 326 l~~~ 329 (334)
++++
T Consensus 371 l~~~ 374 (375)
T PRK04260 371 LSEV 374 (375)
T ss_pred HHHh
Confidence 9875
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-22 Score=175.13 Aligned_cols=279 Identities=13% Similarity=0.130 Sum_probs=186.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh----hhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI----RFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.+.++...+ .+++++++|+++|+..++.+++++||+|++++|.|++....+ . ..|.++..++.. +
T Consensus 55 lE~~lA~l~g--~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~-~~gi~v~~~d~~-------~ 124 (377)
T TIGR01324 55 LQDAMCELEG--GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLK-RMGVDITYYDPL-------I 124 (377)
T ss_pred HHHHHHHHhC--CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHH-hcCcEEEEECCC-------C
Confidence 4445554333 568999999999999999999999999999999998766432 3 568888777531 2
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
.+.+++++++ ++++|++++|+||+|...+ +++|+++|+++|+++++|++|+.... ..++
T Consensus 125 ~e~l~~~i~~------~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~----~~pl-------- 183 (377)
T TIGR01324 125 GEDIATLIQP------NTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLL----FKPL-------- 183 (377)
T ss_pred HHHHHHhcCC------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCccccc----cCcc--------
Confidence 2778888875 7999999999999998887 99999999999999999999975222 1111
Q ss_pred cCCCcEEEEecccccCCC-CCceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSL-PGFRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~-~g~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
+.+.+++++|++|+++. ++...|+++. +++..+.++.....++ .++.....+...++. +..+.++..+
T Consensus 184 -~~gaDivv~S~tK~l~G~~d~~gG~v~~-~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~t-------l~~R~~~~~~ 254 (377)
T TIGR01324 184 -EHGVDISIQAGTKYLVGHSDIMIGTVVA-NARTWDQLREHSYLMGQMVDADDAYTTLRGLRT-------LGVRLKQHQE 254 (377)
T ss_pred -ccCceEEEecCceeccCCCCceEEEEEe-CHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhh-------HHHHHHHHHH
Confidence 15778999999999953 3577888887 7777676664333332 344333333333322 2344566677
Q ss_pred HHHHHHHHHHhCC-Cc-cc-----------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 238 LYDSFVAGLKQLG-IR-CS-----------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 238 ~~~~~~~~l~~~g-~~-~~-----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
++..+.+.|+++. +. +. ...+| .+.+++... ..+....+.+. ++-.++.+.-|..
T Consensus 255 ~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~-~~s~~l~~~----~~~~~~~~~~~-l~~~~~~~slG~~ 328 (377)
T TIGR01324 255 SSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSG-LFSFVLQRL----TQKQVHAFLDH-LQLFGLGYSWGGY 328 (377)
T ss_pred HHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCc-eEEEEECCC----CHHHHHHHHHh-CCcceEeccCCCc
Confidence 7777888887752 21 11 11233 344566421 12334456666 5545555443332
Q ss_pred cCC-----------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 299 CHC-----------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 ~~~-----------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
... ..++-+|+|++ -|+.+++++.|.+++++
T Consensus 329 ~sl~~~~~~~~~~~~~~~~~~~~~liR~svG---lE~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 329 ESLALCNQPELGHRPNIKRNLEGPLIRVHIG---LENVDDLKADLKAGFEA 376 (377)
T ss_pred cceeecCCCCCCHHHHHhccCCCCEEEEEeC---CCCHHHHHHHHHHHHhc
Confidence 111 01246999999 67888888988888764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-22 Score=175.27 Aligned_cols=206 Identities=13% Similarity=0.092 Sum_probs=151.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+++.++... ..+++++++|+++|+..++.+++++||+|++++|.|+++...+. ...|.++..++.. +.
T Consensus 66 Le~~iA~le--~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-------~~ 136 (394)
T PRK09028 66 FQAAIVELE--GGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM-------IG 136 (394)
T ss_pred HHHHHHHHh--CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC-------CH
Confidence 444444332 34589999999999999999999999999999999988776432 1468888777631 45
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++++|++|+... ...++
T Consensus 137 e~l~~~l~~------~TklV~lespsNPtg~v~d---l~~I~~la~~~g~~lvvD~t~a~p~-------~~~Pl------ 194 (394)
T PRK09028 137 EGIRELIRP------NTKVLFLESPGSITMEVQD---VPTLSRIAHEHDIVVMLDNTWASPI-------NSRPF------ 194 (394)
T ss_pred HHHHHhcCc------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCccccc-------cCCcc------
Confidence 778888865 7999999999999998877 9999999999999999999997411 11111
Q ss_pred CCCcEEEEecccccC-CCCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
+.+.+++++|.+|++ |.+++-.|+++. ++++.+.++...... ..++.....+..-++. +.-+.++..++
T Consensus 195 ~~GaDivv~S~tK~l~Gh~d~~~G~~~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~~~~~~n 266 (394)
T PRK09028 195 EMGVDISIQAATKYIVGHSDVMLGTATA-NEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRT-------LGVRLAQHEKN 266 (394)
T ss_pred ccCceEEEEeCCeEecCCCCEEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHHHHH
Confidence 167889999999999 544577787765 777766666443332 3455544444444444 24455667788
Q ss_pred HHHHHHHHHhC
Q 019899 239 YDSFVAGLKQL 249 (334)
Q Consensus 239 ~~~~~~~l~~~ 249 (334)
+..+.+.|+++
T Consensus 267 a~~la~~L~~~ 277 (394)
T PRK09028 267 ALKVANWLATR 277 (394)
T ss_pred HHHHHHHHhcC
Confidence 88888888886
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=176.69 Aligned_cols=153 Identities=14% Similarity=0.215 Sum_probs=124.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.+.++...+ .++.++++++++|+..++.+++++||+|+++.+.|++.... ++ ..|.+++.++. .|
T Consensus 69 Le~~lA~leg--~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~-~~Gv~v~~vd~-------~d 138 (431)
T PRK08248 69 FEKRIAALEG--GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLP-KLGITVKFVDP-------SD 138 (431)
T ss_pred HHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHH-hCCEEEEEECC-------CC
Confidence 3444444333 56889999999999999999999999999999999875443 34 58999999985 37
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+. +....++ .
T Consensus 139 ~e~l~~ai~~------~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~----~~~~~pl----~--- 198 (431)
T PRK08248 139 PENFEAAITD------KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFAS----PYLLRPI----E--- 198 (431)
T ss_pred HHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCc----cccCChh----H---
Confidence 8999998876 7899999999999999999 88999999999999999999763 1111111 1
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeec
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~ 189 (334)
.+.++++.|++|.+|.+|.++|++++.
T Consensus 199 --~gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 199 --HGADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred --cCCCEEEEcCccccCCCCCceEEEEEe
Confidence 677899999999999899999988773
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-22 Score=176.30 Aligned_cols=286 Identities=15% Similarity=0.165 Sum_probs=178.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.++.+ +.+++++ ++.++..++..+.++||.|+++.-.|.+....++ ......+.++ ..|++++
T Consensus 61 ~e~~la~~~~~~-~~l~~~s-G~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~-~~~~~~~~~~-------~~d~~~l 130 (370)
T PRK05937 61 LEHKIAHFHGAP-EAFIVPS-GYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLS-VISGWHQSFR-------HNDLDHL 130 (370)
T ss_pred HHHHHHHHhCCC-eEEEECC-hHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHH-HcCCceEEec-------CCCHHHH
Confidence 444555555543 2355555 4456666666777788999998999999988887 4432333343 3689999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++.++.....++++.+|++++++|++|.+.| +++|.++|+++|+++++|++|+...++.........+. . .+
T Consensus 131 ~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~----~-~~ 202 (370)
T PRK05937 131 ESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLG----Y-EN 202 (370)
T ss_pred HHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhC----C-CC
Confidence 9999864332234566778899999999999 99999999999999999999987544321110011111 0 22
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc----ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR----FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
.++.+.|+||.+|..| +.++. .+++.+.+..... ..+.+++...++..+++. +.+.....++++++.++
T Consensus 203 ~~~~~~tlsK~~g~~G---~~vl~-~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~---l~~~~~~~~~~l~~l~~ 275 (370)
T PRK05937 203 FYAVLVTYSKALGSMG---AALLS-SSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDF---LSQEGELARKQLFRLKE 275 (370)
T ss_pred CcEEEEechhhhhcCc---eEEEc-CHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHH---HHhCcHHHHHHHHHHHH
Confidence 2356789999998666 33444 4555555543211 123455555444444422 22222334566777777
Q ss_pred HHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccH
Q 019899 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDI 319 (334)
Q Consensus 241 ~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l 319 (334)
++.+.|...+. +....+.++.. ...++... +.++||.+... +.+ ..+++|++++. .|++|+
T Consensus 276 ~l~~~l~~~~~-------~~~~~i~~~~~-------~~~~~~~~-L~~~gi~v~~~--~~~-~~~~iRis~~~~~t~edi 337 (370)
T PRK05937 276 YFAQKFSSAAP-------GCVQPIFLPGI-------SEQELYSK-LVETGIRVGVV--CFP-TGPFLRVNLHAFNTEDEV 337 (370)
T ss_pred HHHHhcCCCCC-------CCEEEEEeCCh-------hHHHHHHH-HHHCCeeEEee--CCC-CCCEEEEEcCCCCCHHHH
Confidence 77777653211 11112333321 23456666 56689988632 222 24689999986 699999
Q ss_pred HHHHHHHHHHHHHc
Q 019899 320 PLVIERIQKVAETC 333 (334)
Q Consensus 320 ~~~l~~l~~~~~~~ 333 (334)
+++++.|++++++.
T Consensus 338 d~l~~~L~~~~~~~ 351 (370)
T PRK05937 338 DILVSVLATYLEKY 351 (370)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-22 Score=176.85 Aligned_cols=293 Identities=14% Similarity=0.051 Sum_probs=193.3
Q ss_pred CCCCCCCCcEEEecCcHHHHHHHHHHhcCC-------------------------------CCeEEecCCCCCChhhhhh
Q 019899 11 QAVSFDPSQIVLTAGATPAVEILCFCLADH-------------------------------GNALLVPSPYYPGFDRDIR 59 (334)
Q Consensus 11 ~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~-------------------------------gd~vl~~~p~~~~~~~~~~ 59 (334)
+.|+++..+|-.-+|+. |+..++.++++| ||+|+-.++.++.+.....
T Consensus 106 ~lf~a~~anvqp~Sg~~-An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~ 184 (493)
T PRK13580 106 ELFGAEHAYVQPHSGAD-ANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGF 184 (493)
T ss_pred HHhCCCcccccCCCcHH-HHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCc
Confidence 33555666777666655 888888888865 7999988777665433211
Q ss_pred --hccC--cEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEE
Q 019899 60 --FRTG--VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVIS 135 (334)
Q Consensus 60 --~~~g--~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~ 135 (334)
-..| .+++.+++++ ....+|++++++.+++ +++.++++..+|- |...| +++|.++|+++|+++++
T Consensus 185 ~~n~~~~~~~~~~y~vd~-~~g~iD~d~l~~~~~~------~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~V 253 (493)
T PRK13580 185 RPNISGKMFHQRSYGVDP-DTGLLDYDEIAALARE------FKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMV 253 (493)
T ss_pred ccchhhheeeeEecccCc-ccCccCHHHHHHHHhh------cCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEE
Confidence 0122 5666777753 3457999999999987 5566888877766 45778 99999999999999999
Q ss_pred eccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-cC-CChHHHHH
Q 019899 136 DEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-CS-ISAPTQRL 213 (334)
Q Consensus 136 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 213 (334)
|++|+...+++.......... .+.+++++|++|++ .|.+.|++++ ++++.+.+.+.... ++ ..++...+
T Consensus 254 D~AH~~Gligg~~~~~~~~~~------~~~D~vtgT~hKaL--~GP~GG~I~~-~~~l~~~L~~a~P~i~gg~l~p~iAA 324 (493)
T PRK13580 254 DMAHFAGLVAGKVFTGDEDPV------PHADIVTTTTHKTL--RGPRGGLVLA-KKEYADAVDKGCPLVLGGPLPHVMAA 324 (493)
T ss_pred ECchhhceeccccchhhcCCC------CCCcEEEeCChhhc--cCCCeEEEEe-cHHHHHHHhhCCCcccCCCccHHHHH
Confidence 999988766533321110111 35668899999999 2334588888 78888888543322 22 22232222
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
.+..+. +.......++++++.++.++|.+.|.+.|+++.. ...+..+++++.... .....+...|.+.||.
T Consensus 325 ~avAl~--e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~------~~g~~a~~~L~e~GI~ 396 (493)
T PRK13580 325 KAVALA--EARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFG------LTGRQAESALLDAGIV 396 (493)
T ss_pred HHHHHH--HHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHH------HHHHHHHHHHHHCCeE
Confidence 222222 2111223567889999999999999999998763 234456667775431 1123444447779999
Q ss_pred EcCCCCcCC-CC---CCeEEEEecCC-----CcccHHHHHHHHHHHHHH
Q 019899 293 VTPGSACHC-IE---PGWFRCCFTSL-----THEDIPLVIERIQKVAET 332 (334)
Q Consensus 293 v~~g~~~~~-~~---~~~iRi~~~~~-----~~~~l~~~l~~l~~~~~~ 332 (334)
+.+-..... .+ +..|||++... +++|++++++.|.+++++
T Consensus 397 vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 397 TNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred EccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 875443221 12 56799997742 479999999999988764
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-22 Score=176.23 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=186.4
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
.+++.+++.++. +++++++|+++|+.+++.++ +++||+|+++.++|.++...+. ..|.+++.++++. +++.+|++
T Consensus 37 ~le~~la~~~g~--~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~-~~G~~~v~vd~~~-~~~~~d~~ 112 (379)
T PRK11658 37 ALEQAFCQLTGN--QHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIV-LLGATPVMVDVDR-DTLMVTPE 112 (379)
T ss_pred HHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHH-HcCCEEEEEecCC-CcCCcCHH
Confidence 345555555544 46889999999999999999 7999999999999999988888 8999999999853 45678999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc-ccCCCCcchhhhhhhcccc
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS-IFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 161 (334)
++++++++ ++++|+ |.|++|...+ +++|.++|+++|++||+|++|+.. .+.+.. . ..
T Consensus 113 ~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~---~---g~---- 170 (379)
T PRK11658 113 AIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKGRH---I---GA---- 170 (379)
T ss_pred HHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECCee---c---CC----
Confidence 99999976 788776 5567999988 889999999999999999999752 232211 1 11
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccC-CC--------------------hHHHHHHHHhhCC
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS-IS--------------------APTQRLLISMLSD 220 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~-~~--------------------~~~~~~~~~~l~~ 220 (334)
.+.. +.||++...+++.+.|+++..++++.++++.....+. .+ ...+..+.+++..
T Consensus 171 -~g~~--~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~ 247 (379)
T PRK11658 171 -RGTA--IFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIAL 247 (379)
T ss_pred -CCCE--EEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHH
Confidence 2333 3455533333555788888877888887775432110 00 0001111122211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCC----ce-eEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 221 TKFIQEYLETNKRRIKKLYDSFVAGLKQLGIR-CSESS----AG-LYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
.+ .+.+++..++-++..+++.+.|++.++. +..+. .. ....+.++.... ..+..++... |+++||.+.
T Consensus 248 ~q--l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~-L~~~gI~~~ 321 (379)
T PRK11658 248 VQ--LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERC---GISRDALMEA-LKERGIGTG 321 (379)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccc---cCCHHHHHHH-HHHCCCCCc
Confidence 11 2334555566666677777888776533 22221 12 222344442110 1245678888 566898765
Q ss_pred CCC----C---cC---CC---------CCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 295 PGS----A---CH---CI---------EPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 295 ~g~----~---~~---~~---------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
+.. . |. .. ....+-+.+.. .+++++++.++.+++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~~ 378 (379)
T PRK11658 322 LHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIAG 378 (379)
T ss_pred ccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 211 0 00 00 01234444443 689999999999998763
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-21 Score=173.76 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=124.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.+.+++..+ .+..++++++++++..++.+++++||+|+++.+.|++.... +. ..|.+++.++. .|
T Consensus 62 le~~lA~l~g--~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~-~~G~~v~~v~~-------~d 131 (418)
T TIGR01326 62 LEQRIAALEG--GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLK-RLGIEVRFVDP-------DD 131 (418)
T ss_pred HHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHH-HcCcEEEEECC-------CC
Confidence 4445554444 35789999999999999999999999999999999765443 34 57999998884 17
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||+|.+.| +++|.++|+++|+++|+|++|+.... ...+
T Consensus 132 ~~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~-------~~~l----- 190 (418)
T TIGR01326 132 PEEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYL-------CRPI----- 190 (418)
T ss_pred HHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhc-------CCch-----
Confidence 8999998876 7899999999999999999 89999999999999999999864211 1111
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecC
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYN 190 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~ 190 (334)
+.+.++++.|++|+++.+|.|+|++++++
T Consensus 191 -~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 191 -DHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred -hcCCeEEEECccccccCCccceEEEEEec
Confidence 14678999999999998999999999843
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=178.34 Aligned_cols=295 Identities=12% Similarity=0.090 Sum_probs=193.2
Q ss_pred hhhhcCCCCCCCCcEEEe---cCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhc---------cCcEEEEEeCCC
Q 019899 6 SQVLGQAVSFDPSQIVLT---AGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR---------TGVELIPVHCRS 73 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~---~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~---------~g~~v~~v~~~~ 73 (334)
+++.++.++++++++.++ +++++++.+++.+++++||+|+++...|.++...+... .+.++..++++
T Consensus 86 r~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~- 164 (452)
T PTZ00094 86 QKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN- 164 (452)
T ss_pred HHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC-
Confidence 345556677888887677 78999999999999999999999988888776554201 11334455553
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
.+..+|++++++++++. +++++++. ++.+|+..| +++|.++|+++|+++++|++|+....+....
T Consensus 165 -~~g~id~~~L~~~l~~~-----~~~lvi~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~---- 229 (452)
T PTZ00094 165 -EKGLIDYDKLEELAKAF-----RPKLIIAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVL---- 229 (452)
T ss_pred -CCCCcCHHHHHHHHHHh-----CCCEEEEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCC----
Confidence 23689999999999763 56766553 345899999 8888899999999999999998755432211
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh----hc-c--cCCChHHHHHHHHhhCChHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL----TR-F--CSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~----~~-~--~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
+... .+.+++++|++|+++.| +.|++++ ++++.+.+... .. . ++.+.....++..+++... ..
T Consensus 230 ~~~~-----~~~D~l~~S~hK~l~GP--~Gg~l~~-~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~--~~ 299 (452)
T PTZ00094 230 PSPF-----PYADVVTTTTHKSLRGP--RSGLIFY-RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQ--SP 299 (452)
T ss_pred CCCC-----CCCcEEEcCCccCCCCC--CceEEEE-ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHh--Ch
Confidence 1110 35668899999988323 3477777 44444333221 11 1 1334444444554443221 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc-CCCCcCC--C
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQLGIRCSESSA-GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT-PGSACHC--I 302 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-~g~~~~~--~ 302 (334)
...+.++++.++.+++.+.|.+.|+++..+.. .....+.+.... .+..++... |+++||.+. ++..++. .
T Consensus 300 ~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~-----~~~~~~~~~-L~~~gI~vs~~~~p~~~~~~ 373 (452)
T PTZ00094 300 EWKEYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFG-----ITGSKMEKL-LDAVNISVNKNTIPGDKSAL 373 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcCC-----CCHHHHHHH-HHHCCcEEecccCCCCCcCC
Confidence 34567788999999999999888887764221 222334443221 123344555 677899984 4544432 1
Q ss_pred CCCeEEEEecCC-C----cccHHHHHHHHHHHHHH
Q 019899 303 EPGWFRCCFTSL-T----HEDIPLVIERIQKVAET 332 (334)
Q Consensus 303 ~~~~iRi~~~~~-~----~~~l~~~l~~l~~~~~~ 332 (334)
.++.+|++++.. + ++|++++++.|.++++.
T Consensus 374 ~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 374 NPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred CCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 357899998753 3 89999999999998863
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=174.72 Aligned_cols=283 Identities=17% Similarity=0.182 Sum_probs=188.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.++ .+++++++++++++..++.++ .++||+|+++.++|.++...+. ..|.+++.+++++ +.+.+|+++
T Consensus 23 ~~~~la~~~~--~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~d~~~ 98 (352)
T cd00616 23 FEKAFAEYLG--VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAIL-LLGATPVFVDIDP-DTYNIDPEL 98 (352)
T ss_pred HHHHHHHHhC--CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-HcCCeEEEEecCC-CcCCcCHHH
Confidence 3444444444 357888999999999999998 5899999999999999998888 8899999999853 367899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++.+++ ++++|+++ |++|...+ +++|.++|+++|+++|+|++|+....... . .+. .
T Consensus 99 l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~--~---~~~------~ 155 (352)
T cd00616 99 IEAAITP------RTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKG--R---KVG------T 155 (352)
T ss_pred HHHhcCc------CCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECC--E---Ecc------c
Confidence 9998865 78888876 47899888 88889999999999999999875321100 0 011 1
Q ss_pred CcEEEEeccc--ccCCCCCceEEEEeecCHHHHHHHHHhhcccC-------------CC-hHHHHHHHHhhCChHHHHHH
Q 019899 164 DRVHIIYGLS--KDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS-------------IS-APTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 164 ~~~~~~~s~s--K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~l~~~~~~~~~ 227 (334)
..++.+.|++ |+++ +...|+++.+++++.+.++....... .+ .+....++..+.. .+.
T Consensus 156 ~~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~----l~~ 229 (352)
T cd00616 156 FGDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQ----LEK 229 (352)
T ss_pred CcceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHH----HHh
Confidence 1235566765 9884 33468888867788777765432110 00 1111111111111 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc-----eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQL-GIRCSESSA-----GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
+.+..++.+++.+++.+.|.+. |+++..+.. ...+.+.++.. ...+..++.+. |+++||.+.. .|.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~-L~~~gI~~~~--~~~~ 302 (352)
T cd00616 230 LDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE----AGESRDELIEA-LKEAGIETRV--HYPP 302 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc----CCCCHHHHHHH-HHHCCCCeee--ecCc
Confidence 3556677788889999999886 777654322 23344555431 01244677787 5567996642 1111
Q ss_pred C-----------------------CCCeEEEEecC-CCcccHHHHHHHHH
Q 019899 302 I-----------------------EPGWFRCCFTS-LTHEDIPLVIERIQ 327 (334)
Q Consensus 302 ~-----------------------~~~~iRi~~~~-~~~~~l~~~l~~l~ 327 (334)
. ..+.+|+++.. .+++|++.+++.|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 303 LHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred cccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 0 02579999986 69999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=174.29 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=121.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+.+.++...+ .+..++++++++|+..++.+++++||+|+++.+.|++....+.. ..|.++..++. .|+
T Consensus 63 Le~~lA~l~g--~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-------~d~ 133 (425)
T PRK06084 63 LEQRVAALEG--GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH-------DDI 133 (425)
T ss_pred HHHHHHHHhC--CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC-------CCH
Confidence 4444554433 45677889999999999999999999999999999976655541 24666666653 388
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++++|+||+|.+.| +++|.++|+++|++||+|++|+.... . ..+ .
T Consensus 134 e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~----~---~p~-~---- 192 (425)
T PRK06084 134 AALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL----C---RPF-E---- 192 (425)
T ss_pred HHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----C---Chh-h----
Confidence 999999986 7899999999999999999 89999999999999999999974221 1 111 1
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeec
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSY 189 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~ 189 (334)
.+.++++.|++|.++.+|.++|.+++.
T Consensus 193 -~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 193 -HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred -cCCCEEEECchhcccccccceeEEEEe
Confidence 466789999999998788888887763
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=175.05 Aligned_cols=275 Identities=14% Similarity=0.066 Sum_probs=182.9
Q ss_pred CCcEEEecCcHHHHHHHHHHhc---CC------------CCeEEecCCCCCChhhhhhhccCcE------------EEEE
Q 019899 17 PSQIVLTAGATPAVEILCFCLA---DH------------GNALLVPSPYYPGFDRDIRFRTGVE------------LIPV 69 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~---~~------------gd~vl~~~p~~~~~~~~~~~~~g~~------------v~~v 69 (334)
.+.+++++++++|+..++.... .. ..+|+....+|.+......-..+.. +..+
T Consensus 72 ~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~ 151 (382)
T PLN00144 72 ADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFV 151 (382)
T ss_pred CCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEe
Confidence 4689999999999999887542 10 2568888888877554332122211 1222
Q ss_pred eCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCC
Q 019899 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEE 148 (334)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~ 148 (334)
|. .|++.+++.++. .++++|++...+||.|... +.+.++++.++|++||+++|+||+|.++...+..
T Consensus 152 ~~-------~d~~~l~~~~~~-----~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~ 219 (382)
T PLN00144 152 EY-------GNLEAARKLIQK-----GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYL 219 (382)
T ss_pred CC-------CCHHHHHHhcCC-----CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchH
Confidence 21 268888888753 2677666554488844432 3445999999999999999999999987665542
Q ss_pred cch-hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhh---CChH
Q 019899 149 FVS-MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISML---SDTK 222 (334)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l---~~~~ 222 (334)
+.. ...+. ++ +.|+||.++ +|+|+|++++ ++++.+.+.. ....++.+++.+.++.+.+ .+.+
T Consensus 220 ~~~~~~~~~------PD----i~t~sK~l~-~G~pig~v~~-~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~ 287 (382)
T PLN00144 220 WAHEAYGVE------PD----IMTLAKPLA-GGLPIGAVLV-TEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPG 287 (382)
T ss_pred hhhhhcCCC------CC----EEEeccccc-CCcceEEEEE-cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhch
Confidence 221 22222 33 678999998 8999999999 7888887753 3445678888888888444 3322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
+.++..++.+++ .+.+.+.+.+.+........|+++|+.+.. ....+... +.++||.+.|+..
T Consensus 288 -~~~~~~~~g~~l---~~~l~~~~~~~~~~~~vrg~G~~~~l~l~~--------~~~~~~~~-~~~~Gv~i~~~~~---- 350 (382)
T PLN00144 288 -FLASVAKKGEYL---RELLRRKLGGNPHVKEVRGVGLLVGIQLDV--------PAGPLVDA-CRDSGLLVLTAGK---- 350 (382)
T ss_pred -HHHHHHHHHHHH---HHHHHHHHhhCCCceeeecCceEEEEEecC--------ccHHHHHH-HHHCCeEEeecCC----
Confidence 233333333333 233334444443211111378999999832 12467777 4558999988631
Q ss_pred CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 ~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.+|++++. .+++++++++++|.+++.+.
T Consensus 351 -~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 351 -GDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred -CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 4789999986 68999999999999998764
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-21 Score=171.39 Aligned_cols=280 Identities=17% Similarity=0.167 Sum_probs=182.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.+.++... ..+..+.++++++|+.+++.+++++||+|+++.++|.+.... +. ..|+++..++. .+|
T Consensus 66 lE~~la~le--g~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~-~~Gi~v~~vd~------~~d 136 (432)
T PRK06702 66 FEQKLAELE--GGVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLR-KLGIDVTFFNP------NLT 136 (432)
T ss_pred HHHHHHHHh--CCCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHH-HCCCEEEEECC------CCC
Confidence 344444333 245689999999999999999999999999999999977775 45 68999988874 368
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++++|++ ++++|++.+|+||++.+.| +++|+++|+++|+++++|++|.. +.+.....
T Consensus 137 ~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~t--------P~~~~pl~--- 196 (432)
T PRK06702 137 ADEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLAT--------PYLCQAFE--- 196 (432)
T ss_pred HHHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCc--------hhhCChhh---
Confidence 8999999987 8999999999999999999 99999999999999999999742 11222222
Q ss_pred cCCCcEEEEecccccCC-----CCCceE-----EEEeecCHHHHH---------------------HHH--Hhhc-ccCC
Q 019899 161 VDKDRVHIIYGLSKDLS-----LPGFRT-----GVIYSYNESVLA---------------------AAK--KLTR-FCSI 206 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~-----~~g~r~-----g~i~~~~~~~~~---------------------~~~--~~~~-~~~~ 206 (334)
.+.+++++|+||.++ +.|.++ +|..+++.++.+ ..+ .... ....
T Consensus 197 --~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (432)
T PRK06702 197 --HGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCM 274 (432)
T ss_pred --cCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCC
Confidence 677899999999664 444444 333322222221 111 1112 2345
Q ss_pred ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cccc--C-----------------CCceeEEeeec
Q 019899 207 SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IRCS--E-----------------SSAGLYCWADM 266 (334)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~--~-----------------~~~g~~~~~~~ 266 (334)
++.....+...++.. ..+.++..+++..+.+.|+++. +..+ + .-+| .+.+++
T Consensus 275 sp~~a~l~~rgL~Tl-------~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg-~~sf~l 346 (432)
T PRK06702 275 SPFNAYISNIGLETL-------HLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASG-VLTFGI 346 (432)
T ss_pred CHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCce-EEEEEe
Confidence 666666666666553 2333445678888888888762 2211 0 1123 344666
Q ss_pred CCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC----------cCC-----------CCCCeEEEEecCCCcccHHHHHHH
Q 019899 267 SGLIPSYSEKGELELWDKLLNIAKINVTPGSA----------CHC-----------IEPGWFRCCFTSLTHEDIPLVIER 325 (334)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~----------~~~-----------~~~~~iRi~~~~~~~~~l~~~l~~ 325 (334)
.+. .+....+.+. ++-..+.+.-|.. .+. ..++.+|+|++ -|+.+.+++.
T Consensus 347 ~~~-----~~~~~~f~~~-l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG---lEd~eDLi~D 417 (432)
T PRK06702 347 KGG-----LEAAKEFIAN-VKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVG---IEDVSDIIAD 417 (432)
T ss_pred cCC-----HHHHHHHHHh-CccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHH
Confidence 421 1223344444 3322332222221 000 02357999999 7788889999
Q ss_pred HHHHHHH
Q 019899 326 IQKVAET 332 (334)
Q Consensus 326 l~~~~~~ 332 (334)
|.++++-
T Consensus 418 l~~Al~~ 424 (432)
T PRK06702 418 LEAALVG 424 (432)
T ss_pred HHHHHhc
Confidence 9988854
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=178.77 Aligned_cols=289 Identities=16% Similarity=0.120 Sum_probs=185.3
Q ss_pred CCCCCCcEEEecCcHHHHHHH--HH-HhcCCCC----eEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEIL--CF-CLADHGN----ALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~--~~-~l~~~gd----~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
++++...+..++|+++.+..+ ++ .+.++|| +|+++.|.|+.+...+. ..|.+++.+++ +.++.+|+++++
T Consensus 126 ~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~-~~G~~vv~v~~--~~~~~~D~e~L~ 202 (481)
T PRK04366 126 TGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAA-MAGFKVVEIPS--NEDGLVDLEALK 202 (481)
T ss_pred hCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHH-HcCCEEEEeec--CCCCCcCHHHHH
Confidence 344544455555555444432 22 3456666 99999999999999988 89999999998 345689999999
Q ss_pred HHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCc
Q 019899 86 QAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR 165 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (334)
+++++ ++++|++++|+ |||.+ .+++++|+++|+++|+++++|.++..... + ..... +.+.
T Consensus 203 ~~i~~------~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~-g-----~~~~~-----~~Ga 262 (481)
T PRK04366 203 AAVGE------DTAALMLTNPN-TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAIL-G-----KARPG-----DMGF 262 (481)
T ss_pred hhccc------CCeEEEEeCCC-Ccccc--chHHHHHHHHHHHcCCEEEEEecChhhhc-c-----cCCcc-----ccCC
Confidence 99976 78999999988 99965 34599999999999999999999753111 1 01111 1577
Q ss_pred EEEEecccccCCCC----CceEEEEeecCHHHHHHHHHh------hc---------------ccCCChHHHHHHHHhhCC
Q 019899 166 VHIIYGLSKDLSLP----GFRTGVIYSYNESVLAAAKKL------TR---------------FCSISAPTQRLLISMLSD 220 (334)
Q Consensus 166 ~~~~~s~sK~~~~~----g~r~g~i~~~~~~~~~~~~~~------~~---------------~~~~~~~~~~~~~~~l~~ 220 (334)
++++++.+|+++.| |..+|++.+ ++++.+.+... .. .++.+.....++..++..
T Consensus 263 D~~~~~~hK~l~~P~g~Ggp~~G~l~~-~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~ 341 (481)
T PRK04366 263 DVVHLNLHKTFSTPHGGGGPGSGPVGV-KEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS 341 (481)
T ss_pred CEEEEechhhcCCCCCCCCCCeeeeee-hhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH
Confidence 89999999998644 355788887 55555544200 00 011111222223333222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcee-EEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 221 TKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGL-YCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
+..+.+.+..++...+.+++.+.|++. +++..+...+ -+.++++.... ...+..++.++|. ++||.+. +..+
T Consensus 342 --~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~v~~~L~-~~Gi~~~-~~~~ 414 (481)
T PRK04366 342 --LGAEGLREVSEDAVLNANYLKARLKDI-YDLPYDRPCMHEFVLSGKKLKE--TGVRTLDIAKRLL-DYGFHPP-TIYF 414 (481)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCCeeEEEEEECccccc--cCCCHHHHHHHHH-HCCccCC-cccc
Confidence 123445566677788899999999886 3332221111 12334332100 0124567888854 5899865 2222
Q ss_pred CCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 300 HCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
....++.+|++++. .|++|++++++.|+++.++
T Consensus 415 p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~ 448 (481)
T PRK04366 415 PLIVPEALMIEPTETESKETLDAFIAAMKQIAEE 448 (481)
T ss_pred ccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHH
Confidence 11225689999985 5899999999999998765
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=167.18 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=144.9
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~ 80 (334)
-+++.++...+. +..+++++++.++..++ .++++||+|+++.|+|++....+. ...|.+++.++. .|
T Consensus 54 ~Le~~lA~l~g~--~~~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~-------~d 123 (377)
T PRK07671 54 ALEELIAVLEGG--HAGFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT-------SN 123 (377)
T ss_pred HHHHHHHHHhCC--CceEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC-------CC
Confidence 344555554443 33455666677887765 577899999999999996554322 147899988874 37
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||+|.+.+ +++|.++|+++|+++++|++|+...+. .++ .
T Consensus 124 ~~~l~~ai~~------~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~----~p~----~--- 183 (377)
T PRK07671 124 LEEVEEAIRP------NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQ----SPI----S--- 183 (377)
T ss_pred HHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccC----Chh----h---
Confidence 8999999876 7899999999999999988 999999999999999999998753221 111 1
Q ss_pred cCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.++++.|++|+++.++ .-.|++++.++++.+.++..+...+ .++.....+..-++. +..+.++..+
T Consensus 184 --~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~t-------l~~R~~~~~~ 254 (377)
T PRK07671 184 --LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKT-------LGIRMEEHET 254 (377)
T ss_pred --hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcCh-------HHHHHHHHHH
Confidence 455789999999996443 3457777767788888876655532 333333322222222 3445566778
Q ss_pred HHHHHHHHHHhC
Q 019899 238 LYDSFVAGLKQL 249 (334)
Q Consensus 238 ~~~~~~~~l~~~ 249 (334)
++..+.+.|+++
T Consensus 255 na~~la~~L~~~ 266 (377)
T PRK07671 255 NSRAIAEFLNNH 266 (377)
T ss_pred HHHHHHHHHHcC
Confidence 888888888875
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-21 Score=170.51 Aligned_cols=278 Identities=17% Similarity=0.168 Sum_probs=182.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcE-EEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVE-LIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~-v~~v~~~~~~~~~~~~~~ 83 (334)
+.+.++... ..+++++++|+++|+.+++. ++++||+|+++.+.|......+. ....+ -+.+. +..|+++
T Consensus 59 le~~lA~le--g~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~-~~~~~~~~~~~------~~~d~~~ 128 (364)
T PRK07269 59 LEETLAAIE--SADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFN-QQEKEGRFHFT------YANTEEE 128 (364)
T ss_pred HHHHHHHHh--CCCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHH-HHHhcCcEEEE------ecCCHHH
Confidence 444455443 46799999999999999984 56899999999999987665444 21111 11111 2357899
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++++ ++++|++++|+||+|.+.+ +++|+++|+++|+++++|++|....+ ..+ + + .
T Consensus 129 l~~~i~~------~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~----~~p---l-~-----~ 186 (364)
T PRK07269 129 LIAAIEE------DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIY----QRP---I-E-----L 186 (364)
T ss_pred HHHhcCc------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc----CCc---h-h-----h
Confidence 9999976 7999999999999999998 99999999999999999999753211 111 1 1 4
Q ss_pred CcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
+.++++.|++|.++.+| .=.|+++++++++.++++...... ..++.....+..-++. +..+.++..+++.
T Consensus 187 gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-------L~~r~~~~~~na~ 259 (364)
T PRK07269 187 GADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-------LSLRMERSTANAQ 259 (364)
T ss_pred CCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHH
Confidence 66789999999996444 235787876788888776544332 3455554544444444 2445556677778
Q ss_pred HHHHHHHhCC-C-ccc-CCCceeEEeeecCCcCCCCChhhHHHHHHH---------HHHhcCeEEcCCCCcCCC------
Q 019899 241 SFVAGLKQLG-I-RCS-ESSAGLYCWADMSGLIPSYSEKGELELWDK---------LLNIAKINVTPGSACHCI------ 302 (334)
Q Consensus 241 ~~~~~l~~~g-~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------ll~~~gi~v~~g~~~~~~------ 302 (334)
.+.+.|+.+. + ++. ++.+|++. +.+.. ......+.+. |...+.+.+.|...++..
T Consensus 260 ~~a~~L~~~p~v~~v~ypg~gg~~s-f~~~~------~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r 332 (364)
T PRK07269 260 EVVAFLKKSPAVKEVLYTGKGGMIS-FKVAD------ETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVR 332 (364)
T ss_pred HHHHHHHhCCCccEEeCCCcCcEEE-EEECC------HHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHH
Confidence 8888888763 3 233 55566655 44421 0111222222 122223444454433221
Q ss_pred -----CCCeEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 303 -----EPGWFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 303 -----~~~~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
.++-+|+|++ -|+.+.+++.|.++++
T Consensus 333 ~~~Gi~~~liRlsvG---lE~~~dli~dl~~al~ 363 (364)
T PRK07269 333 HSYGLTDDLLRLSIG---IEDARDLIADLKQALE 363 (364)
T ss_pred HhcCCCCCeEEEEec---cCCHHHHHHHHHHHhc
Confidence 2467999999 6788889999988874
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-21 Score=172.14 Aligned_cols=275 Identities=17% Similarity=0.234 Sum_probs=179.1
Q ss_pred CCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 17 PSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
.+++++++|+++|+.+++..+ +++||+|+++.|+|.++...+. ..|.+++.+++++ +++.+|++++++++++
T Consensus 46 ~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~-~~G~~~v~~d~d~-~~~~~d~~~le~~i~~----- 118 (375)
T PRK11706 46 SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFV-LRGAKIVFVDIRP-DTMNIDETLIEAAITP----- 118 (375)
T ss_pred CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHH-HcCCEEEEEecCC-CcCCcCHHHHHHhcCC-----
Confidence 468999999999998887766 6899999999999999999988 8999999999863 4578999999999875
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcEEEEeccc-
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRVHIIYGLS- 173 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s- 173 (334)
++++|+++ |++|...+ +++|.++|+++|++||+|++|+.+. +.+..... . .++.+.||+
T Consensus 119 -~tk~i~~~---~~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~-----------~-~~~~~~Sf~~ 179 (375)
T PRK11706 119 -KTRAIVPV---HYAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGT-----------I-GHIGCFSFHE 179 (375)
T ss_pred -CCeEEEEe---CCCCCccC---HHHHHHHHHHcCCEEEEECccccccccCCeeeec-----------C-cCEEEEeCCC
Confidence 78888876 46898888 8899999999999999999998765 33321111 1 123334554
Q ss_pred -ccCCCCCceEEEEeecCHHHHHHHHHhhcc-------------------cCCChHHHHHHHHhh-CChHHHHHHHHHHH
Q 019899 174 -KDLSLPGFRTGVIYSYNESVLAAAKKLTRF-------------------CSISAPTQRLLISML-SDTKFIQEYLETNK 232 (334)
Q Consensus 174 -K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~ 232 (334)
|.++ +|.+.+++.. ++++.++++..+.. .+.+.......+++. ... +.+++..
T Consensus 180 ~K~l~-~g~gG~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql----~~l~~~~ 253 (375)
T PRK11706 180 TKNYT-AGEGGALLIN-DPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQL----EAADRIN 253 (375)
T ss_pred Ccccc-ccCCeEEEEC-CHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHH----HHHHHHH
Confidence 9997 6777777765 88888877654422 112221111111111 111 1233444
Q ss_pred HHHHHHHHHHHHHHHhCC----Cccc-CCC----ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC----CCc
Q 019899 233 RRIKKLYDSFVAGLKQLG----IRCS-ESS----AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG----SAC 299 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g----~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g----~~~ 299 (334)
++-+++.+++.+.|.... +... .+. ..+++++.++.. .+..++.+. ++++||.+.+. ...
T Consensus 254 ~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~r~~l~~~-L~~~gI~~~~~~~p~~~~ 326 (375)
T PRK11706 254 QRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDL------EDRSALINF-LKEAGIMAVFHYIPLHSS 326 (375)
T ss_pred HHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCc------CCHHHHHHH-HHHCCCCccccCCccCcc
Confidence 444455566666665542 3322 121 223455666542 134677777 55589986532 110
Q ss_pred ------CCC----------CCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 300 ------HCI----------EPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 300 ------~~~----------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+.. ..+.+-+-+.. .+++|++..++.+++++
T Consensus 327 ~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 327 PAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred hhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 000 01234444443 68999999999998865
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=167.60 Aligned_cols=271 Identities=12% Similarity=0.087 Sum_probs=174.9
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+..++++++++|+..++.+++++||+|+++.|.|+++... ++ ..|.++..++.. +.+.+++++++
T Consensus 80 ~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~-~~Gi~v~~vd~~-------~~e~l~~al~~--- 148 (395)
T PRK05967 80 AGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLK-RLGVEVEYYDPE-------IGAGIAKLMRP--- 148 (395)
T ss_pred CCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHH-hcCeEEEEeCCC-------CHHHHHHhcCc---
Confidence 3456677789999999999999999999999999998753 34 679998888641 34778888876
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++++|+||++.+.+ +++|+++|+++|+++++|++|... ....++ +.+.+++++|.+
T Consensus 149 ---~TklV~lesPsNP~l~v~d---l~~I~~la~~~g~~vvVD~t~a~p-------~~~~pl------~~GaDivv~S~t 209 (395)
T PRK05967 149 ---NTKVVHTEAPGSNTFEMQD---IPAIAEAAHRHGAIVMMDNTWATP-------LYFRPL------DFGVDISIHAAT 209 (395)
T ss_pred ---CceEEEEECCCCCCCcHHH---HHHHHHHHHHhCCEEEEECCccCc-------eecChh------HcCCCEEEEecc
Confidence 7999999999999876666 999999999999999999998641 112222 167789999999
Q ss_pred ccCC-CCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 019899 174 KDLS-LPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG 250 (334)
Q Consensus 174 K~~~-~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 250 (334)
|.++ .++.-.|+++. +++..+.+....... ..++.. +..+++..+. +.-+.++..+++..+.+.|+++.
T Consensus 210 Ky~~Gh~d~~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~d---a~l~~rgl~T----l~lR~~~~~~na~~lA~~L~~hp 281 (395)
T PRK05967 210 KYPSGHSDILLGTVSA-NEKCWPQLLEAHGTLGLCAGPDD---TYQILRGLRT----MGIRLEHHRKSALEIARWLEGRP 281 (395)
T ss_pred cccCCCCCeeEEEEEc-CHHHHHHHHHHHHHcCCCCCHHH---HHHHHcCccc----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 9984 34566787765 777666665433332 233333 3333333221 23444566777777888887762
Q ss_pred -Cc---ccC---------------CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC----------
Q 019899 251 -IR---CSE---------------SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC---------- 301 (334)
Q Consensus 251 -~~---~~~---------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------- 301 (334)
++ +.. .-+|+ +.+++..... ...+.+..+.+. ++-..+.+.-|.....
T Consensus 282 ~v~~V~yPgl~s~p~~~~~~~~~~g~gg~-~sf~l~~~~~-~~~~~~~~f~~~-l~l~~~~~slG~~~sLi~~~~~~~~~ 358 (395)
T PRK05967 282 DVARVLHPALPSFPGHEIWKRDFSGASGI-FSFVLAAGPE-KGKAKAHAFLDA-LEIFGLGYSWGGYESLALHVKLGDRT 358 (395)
T ss_pred CCcEEECCCCCCCccHHHHHHhCCCCceE-EEEEEcCCCc-ccHHHHHHHHHh-CCcceEccCCCCcceeeeeCCCChhH
Confidence 21 110 12343 4566642100 011222334444 3322222222221100
Q ss_pred -----CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 302 -----IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 -----~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
..++-+|+|++ .|+.+.+++.|.+++++
T Consensus 359 ~~~~~~~~~liRlSvG---lEd~~dLi~Dl~~Al~~ 391 (395)
T PRK05967 359 VAKAPYAGPVIRLQIG---LEDVPDLKADLERGFAA 391 (395)
T ss_pred hhhccCCCCeEEEEec---cCCHHHHHHHHHHHHHh
Confidence 01246999999 67788888888888865
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-21 Score=171.16 Aligned_cols=275 Identities=14% Similarity=0.113 Sum_probs=184.4
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCCh-hhhhhhccCc------------EEEEEeCCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGF-DRDIRFRTGV------------ELIPVHCRSTD 75 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~-~~~~~~~~g~------------~v~~v~~~~~~ 75 (334)
.+.+++++++++|+..++.... ...++|+..+.+|.+. ...+. ..+. .+..++
T Consensus 92 ~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----- 165 (397)
T TIGR03246 92 ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVS-VGGQPKYSQGFAPLPGGIKHAP----- 165 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHH-hcCCcccccCCCCCCCceEEeC-----
Confidence 4699999999999999988761 1235677776666654 33333 3332 122222
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
..|++.+++++++ ++++|++..++++.|... |.+.+++|.++|++||+++|+||+|.++...|..+. ...
T Consensus 166 --~~d~~~l~~~l~~------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a-~~~ 236 (397)
T TIGR03246 166 --YNDLAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYA-YMH 236 (397)
T ss_pred --CCCHHHHHHHhcc------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchh-hhh
Confidence 1378999998864 688777775566777654 789999999999999999999999987755443221 111
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
. +....+.+++|.++ .|+++|++++ ++++.+.+... ...++.+++.+.++.+.++..+ + .++.
T Consensus 237 ~--------gv~pDi~t~~K~lg-gG~pigav~~-~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~---~--~~l~ 301 (397)
T TIGR03246 237 Y--------GVTPDILTSAKALG-GGFPIGAMLT-TTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN---T--PELL 301 (397)
T ss_pred c--------CCCCCEEEeehhhh-CCcceeEEEE-cHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh---h--ccHH
Confidence 1 11122347899998 8999999998 78888887643 2345678888777777765321 1 3456
Q ss_pred HHHHHHHHHHHHHHHhCCC--ccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEE
Q 019899 233 RRIKKLYDSFVAGLKQLGI--RCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFR 308 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~--~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iR 308 (334)
++++++.+++.+.|++++. .+. ....|.++.+.+.... ......+...|++ +|+.+.+.. ++++|
T Consensus 302 ~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~----~~~~~~~~~~l~~-~Gv~~~~~g------~~~lR 370 (397)
T TIGR03246 302 AGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAY----QGKAKQFVNAAAE-EGVIALIAG------PNVVR 370 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCch----hhHHHHHHHHHHH-CCeEEeecC------CCEEE
Confidence 7777888888888877532 211 1122444445553211 1234577777555 799987621 36899
Q ss_pred EEecC-CCcccHHHHHHHHHHHHHH
Q 019899 309 CCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 309 i~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++++. .+++++++++++|.+++++
T Consensus 371 ~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 371 FAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 97664 6999999999999999875
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=169.30 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=121.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh---hhhhccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR---DIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+.+.+++..+ .+..++++++++|+..++.+++++||+|+++++.|+++.. .+. ..|.+++.++. .|+
T Consensus 52 lE~~la~leg--~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~-~~G~~v~~v~~-------~d~ 121 (397)
T PRK05939 52 LEAKITKMEG--GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLR-GLGVEVTMVDA-------TDV 121 (397)
T ss_pred HHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHH-hcCCEEEEECC-------CCH
Confidence 3444444333 3456777777999999999999999999999999987543 444 67999999885 378
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++++|+||+|.+.+ +++|.++|+++|+++++|++|+... .+.. .
T Consensus 122 e~l~~~l~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a~~~-------~~~~-~----- 179 (397)
T PRK05939 122 QNVAAAIRP------NTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMTSPW-------LFRP-K----- 179 (397)
T ss_pred HHHHHhCCC------CCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCccccc-------ccCc-c-----
Confidence 999999876 8999999999999999977 9999999999999999999985311 1111 1
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeec
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSY 189 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~ 189 (334)
+.+.+++++|+||.++.+|.++|++++.
T Consensus 180 ~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 180 DVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred ccCCEEEEecCeecccCCCCeEEEEEec
Confidence 1567899999999998889999998773
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=168.91 Aligned_cols=160 Identities=23% Similarity=0.326 Sum_probs=138.3
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-CCCC----eEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-DHGN----ALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNF 77 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-~~gd----~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~ 77 (334)
-|+.+++.+++++.+|++|+|+|++++++++... ..+| +|++.+-.|++....++. ..|.+++++|+. +++
T Consensus 90 aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~ 167 (428)
T KOG1549|consen 90 AREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSG 167 (428)
T ss_pred HHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccc
Confidence 4566778889999999999999999999999873 3455 899999999998887761 258999999995 666
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
.+|++.+++.|+. +++++.+.+.+|.+|+++| +++|..+|+++++.+++|.+++- |....+..++
T Consensus 168 ~~d~~~~~~~i~~------~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQav----G~i~vDV~el-- 232 (428)
T KOG1549|consen 168 LVDISKLREAIRS------KTRLVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAV----GKIPVDVQEL-- 232 (428)
T ss_pred cccHHHHHHhcCC------CceEEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhc----CCccccHHHc--
Confidence 8999999999997 8999999999999999999 99999999999999999999986 5566677664
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeec
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~ 189 (334)
+.+++..|.||++|.+| +|+++++
T Consensus 233 ------n~D~~s~s~HK~ygp~~--iGaLYvr 256 (428)
T KOG1549|consen 233 ------NADFLSISAHKIYGPPG--IGALYVR 256 (428)
T ss_pred ------CchheeeecccccCCCc--ceEEEEc
Confidence 55677889999999888 8999984
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=174.84 Aligned_cols=217 Identities=12% Similarity=0.099 Sum_probs=146.3
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCC----ccccHHH
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDN----FAFSITA 83 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~----~~~~~~~ 83 (334)
.+++.++.+ +.+++++|+++++.+++.+++++||+|+++.++|.+....+. ..|.++++++...+.+ ..+|+++
T Consensus 67 ~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~-~~g~~~~~v~~~~~~~~~~~~~i~~~~ 144 (294)
T cd00615 67 LAARAFGAK-HTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLV-LSGAVPVYLKPERNPYYGIAGGIPPET 144 (294)
T ss_pred HHHHHhCCC-CEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHH-HCCCEEEEecCccCcccCcCCCCCHHH
Confidence 344444432 345559999999999999999999999999999999999988 8899999988654333 3789999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc-ccCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS-IFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++. .+++++++++| |++|.++| +++|+++|+++|+++++|++|+.. .+.+...... . .
T Consensus 145 l~~~l~~~----~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~---~-----~ 208 (294)
T cd00615 145 FKKALIEH----PDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA---A-----M 208 (294)
T ss_pred HHHHHHhC----CCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccCcch---h-----h
Confidence 99999752 36899999998 68999999 999999999999999999999753 2322111111 1 1
Q ss_pred CCcEEEEecccccCCCCCceEEEEe-ecCH-HHHHHHHHhhccc---CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIY-SYNE-SVLAAAKKLTRFC---SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~-~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.++++.|++|++ +|++.|+++ .+++ ...+++......+ +++.+...++..++. ++.....+..+++.+
T Consensus 209 ~~~div~~S~hK~l--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~---~~~~~g~~~~~~~~~ 283 (294)
T cd00615 209 AGADIVVQSTHKTL--PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARA---MMALEGKELVEELIE 283 (294)
T ss_pred cCCcEEEEchhccc--chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHH---HHHHHhHHHHHHHHH
Confidence 57789999999987 666655543 3222 1123333222222 223233333333332 222223445556666
Q ss_pred HHHHHHHHHH
Q 019899 238 LYDSFVAGLK 247 (334)
Q Consensus 238 ~~~~~~~~l~ 247 (334)
+.+.+++.+.
T Consensus 284 ~~~~~r~~l~ 293 (294)
T cd00615 284 LALYARQEIN 293 (294)
T ss_pred HHHHHHHHHh
Confidence 6677776654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=171.25 Aligned_cols=293 Identities=13% Similarity=0.040 Sum_probs=179.1
Q ss_pred CcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC-------------cEEEEEeCCCCCC------
Q 019899 18 SQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG-------------VELIPVHCRSTDN------ 76 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~~v~~~~~~~------ 76 (334)
+.+++++++++|+..++.... ....+|+....+|.+......-..+ ..+..++.++...
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDK 174 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc
Confidence 689999999999998877542 2345688888888765432220111 1122333211000
Q ss_pred ---ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHH-HHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 77 ---FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET-LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 77 ---~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~-l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
+.-+++.+++.+... ...+++.+|++...+..+|.+.+.++ +++|.++|++||+++|+||+|.++.+.+. +..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~ 252 (420)
T TIGR00700 175 QLSTDGELAAARAIFVID-VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFAC 252 (420)
T ss_pred chhHHHHHHHHHHHHHhh-cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHH
Confidence 011245566555311 12246666666544778888776555 99999999999999999999998876553 1122
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChH--HHHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTK--FIQEYL 228 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~ 228 (334)
.. .+....+.++||.++ +|+|+||+++ ++++.+.+.. ....++.+++.+.++.+.++..+ .+.++.
T Consensus 253 ~~--------~~~~pDi~~lsK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~ 322 (420)
T TIGR00700 253 EH--------EGPEPDLITTAKSLA-DGLPLSGVTG-RAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERA 322 (420)
T ss_pred hh--------cCCCCCEEEeecccc-CCcceEEEEe-cHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHH
Confidence 11 122223456999999 9999999998 7888887753 34556788999888866664321 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CcccCCCceeEEeeecCCcCCC-CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCe
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLG-IRCSESSAGLYCWADMSGLIPS-YSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~ 306 (334)
.++.+++++..+.+ ...++ +..+.+. |.++|+.+...... ........+... +.++||.+.|+..|+ ++
T Consensus 323 ~~~g~~l~~~L~~l---~~~~~~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~~Gv~i~p~~~f~----~~ 393 (420)
T TIGR00700 323 RQIGRLVTDRLTTL---KAVDPRIGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATA-AHAAGLLLLTCGMFG----NI 393 (420)
T ss_pred HHHHHHHHHHHHHH---HhhCCCEEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHH-HHHCCeEEeccCCCC----CE
Confidence 23333322222222 22222 2223343 77778877432110 111223345555 356899999987663 68
Q ss_pred EEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 307 FRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 307 iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
+|++++. .+++++++++++|.+++.
T Consensus 394 lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 394 IRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 9999874 689999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=169.43 Aligned_cols=292 Identities=12% Similarity=0.048 Sum_probs=183.8
Q ss_pred hhcCCCCCCCCcE-EEecCcHHHHHHHHHHhcCCCCeEEecCCCCCCh-hhhhhhc--cCcEE--EEEeCCCCCCccccH
Q 019899 8 VLGQAVSFDPSQI-VLTAGATPAVEILCFCLADHGNALLVPSPYYPGF-DRDIRFR--TGVEL--IPVHCRSTDNFAFSI 81 (334)
Q Consensus 8 ~~~~~~~~~~~~i-~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~-~~~~~~~--~g~~v--~~v~~~~~~~~~~~~ 81 (334)
++++.++ .+.. +.+++++.|+..++.+++++||+|+++..+|.+. ...+. . .+... ..++.+ ...+.+|+
T Consensus 82 ~la~l~g--~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~-~~~~~~d~ 157 (416)
T PRK13034 82 RAKQLFG--CDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAK-VSLSGKWYNAVQYGVD-RLTGLIDY 157 (416)
T ss_pred HHHHHhC--CCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCc-ceeccceeeeEEcccc-cccCCcCH
Confidence 4444444 3355 4467889999999999999999999999999873 32332 1 12222 234432 23457899
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++.++.. ++++|++..+. +|+..| +.+|.++|+++|+++++|++|+...+.... ....+
T Consensus 158 ~~le~~l~~~-----~~klVi~~~~~--~g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~--~~~~~------ 219 (416)
T PRK13034 158 DEVEELAKEH-----KPKLIIAGFSA--YPRELD---FARFREIADEVGALLMVDMAHIAGLVAAGE--HPNPF------ 219 (416)
T ss_pred HHHHHHHhhc-----CCeEEEECCCc--cccccC---HHHHHHHHHHcCCEEEEeCcccccCcccCC--CCCCC------
Confidence 9999988653 57877766554 467777 888889999999999999999875543211 11111
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc--C-CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--S-ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
...+++++|++|+++.+ ..|++++.++.+.+.++...... + ..++...++. +...+.+.....++++++.++
T Consensus 220 -~~~Di~~~s~~K~l~g~--~GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~--~al~~~~~~~~~~~~~~l~~~ 294 (416)
T PRK13034 220 -PHAHVVTTTTHKTLRGP--RGGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKA--VAFGEALQPEFKTYAKQVIAN 294 (416)
T ss_pred -CCceEEEEeCcccCCCC--CCeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHH--HHHHHHhChhHHHHHHHHHHH
Confidence 24568889999999323 24777775666666555432221 1 2222222222 111121112234567899999
Q ss_pred HHHHHHHHHhCCCcccCC-CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc----CCCCCCeEEEEecC
Q 019899 239 YDSFVAGLKQLGIRCSES-SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC----HCIEPGWFRCCFTS 313 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~----~~~~~~~iRi~~~~ 313 (334)
.+++.+.|++.|+++..+ .......+.+..... ....+.+. |+++||.+.+.... .+..+..+|++++.
T Consensus 295 a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~~-----~~~~~~~~-L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~ 368 (416)
T PRK13034 295 AQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGL-----SGKDAEQA-LERAGITVNKNTVPGDTESPFVTSGIRIGTPA 368 (416)
T ss_pred HHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCCC-----CHHHHHHH-HHhCCcEEeccCCCCCCcCCCCCCeeEeCcHH
Confidence 999999999999987642 233445555543211 22334455 67789988642111 11124679999764
Q ss_pred -----CCcccHHHHHHHHHHHHHH
Q 019899 314 -----LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 -----~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++|++++++.|.+++.+
T Consensus 369 ~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 369 GTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHhc
Confidence 3589999999999988764
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=167.49 Aligned_cols=280 Identities=12% Similarity=0.149 Sum_probs=175.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+.+.++...+ .+..+++++++.|+.+++ .++++||+|++++|.|++....+. ...|.+++.++. .|+
T Consensus 55 Le~~la~l~g--~~~al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~-------~d~ 124 (380)
T PRK06176 55 LEELIADLEG--GVKGFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT-------SDL 124 (380)
T ss_pred HHHHHHHHhC--CCCEEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC-------CCH
Confidence 4445554443 345566677788998766 567899999999999987654332 146888888774 378
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++++|+||+|.+.| +++|.++|+++|+++|+|++|+...+. .++ .
T Consensus 125 e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~----~p~----~---- 183 (380)
T PRK06176 125 SQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ----NPL----L---- 183 (380)
T ss_pred HHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccC----Ccc----c----
Confidence 999998876 7999999999999999999 889999999999999999999753321 111 1
Q ss_pred CCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+.++++.|++|.++.+| .-.|+++..++++.+.++..+...+ .++.....+..-++.. ..+.++..++
T Consensus 184 -~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~tl-------~~R~~~~~~~ 255 (380)
T PRK06176 184 -LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTL-------GLRMEAHQKN 255 (380)
T ss_pred -cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCcH-------HHHHHHHHHH
Confidence 466789999999996554 4467777756677777765544432 2333333333223221 2233334455
Q ss_pred HHHHHHHHHhC-CCc-cc----------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc-
Q 019899 239 YDSFVAGLKQL-GIR-CS----------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC- 299 (334)
Q Consensus 239 ~~~~~~~l~~~-g~~-~~----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~- 299 (334)
+..+.+.|+++ .+. +. ....|-.+.+++... +....+++. ++-..+...-|...
T Consensus 256 a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~------~~~~~f~~~-l~~~~~~~s~G~~~s 328 (380)
T PRK06176 256 ALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKND------SEAVAFVES-LKLFILGESLGGVES 328 (380)
T ss_pred HHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH------HHHHHHHHc-CCcceEccCCCCCCc
Confidence 56666666654 111 00 011233455666421 122233333 22222222222211
Q ss_pred ---------CC-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 300 ---------HC-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 300 ---------~~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+. ..++-+|+|++ .|+.+++++.|.+++++.
T Consensus 329 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG---lE~~~dli~dl~~Al~~~ 379 (380)
T PRK06176 329 LVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG---IEHEQDLLEDLEQAFAKI 379 (380)
T ss_pred eeeCCcccccccCCHHHHHhcCCCcCeEEEEec---cCCHHHHHHHHHHHHhhc
Confidence 00 01357999999 778889999999998764
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=169.89 Aligned_cols=267 Identities=14% Similarity=0.162 Sum_probs=173.5
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
.+++++++++++++.+++ .++++||+|+++.|.|+++... +. ..|.+++.++. .|++++++++++
T Consensus 148 ~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~-~~G~~v~~vd~-------~d~e~l~~ai~~-- 216 (464)
T PLN02509 148 ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVP-RSGVVVKRVNT-------TNLDEVAAAIGP-- 216 (464)
T ss_pred CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHH-HCCeEEEEeCC-------CCHHHHHHhCCc--
Confidence 567788888898886655 5789999999999999987643 33 57888888863 368889888865
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
++++|++++|+||+|.+.+ +++|+++|+++|+++++|++|+..... .+ + . .+.+++++|+
T Consensus 217 ----~TklV~lesPsNPtG~i~D---l~~I~~lAk~~g~~lIVD~A~a~~~~~----~p---l-~-----~gaDivv~S~ 276 (464)
T PLN02509 217 ----QTKLVWLESPTNPRQQISD---IRKIAEMAHAQGALVLVDNSIMSPVLS----RP---L-E-----LGADIVMHSA 276 (464)
T ss_pred ----CCeEEEEECCCCCCCCHHH---HHHHHHHHHHcCCEEEEECCccccccC----Ch---h-h-----cCCcEEEecC
Confidence 7899999999999999876 999999999999999999998642221 11 1 1 4567889999
Q ss_pred cccCCCCC-ceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 173 SKDLSLPG-FRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 173 sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
+|+++.+| .-.|++++.++.+.+.++..+... ..++.. +...+...+ .+..+.++..++++.+.+.|+++
T Consensus 277 tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~---A~l~lr~L~----tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 277 TKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFD---CWLCLRGIK----TMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred cccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHH---HHHHHhhhh----hHHHHHHHHHHHHHHHHHHHhcC
Confidence 99996433 346777765666656555433322 223333 333333222 23455667778888888888876
Q ss_pred -CCc---cc---------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC----------
Q 019899 250 -GIR---CS---------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH---------- 300 (334)
Q Consensus 250 -g~~---~~---------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~---------- 300 (334)
.++ +. ..-+|++. +.+.. .+....+.+. ++-..+.+.-|....
T Consensus 350 p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~s-f~~~~------~~~~~~f~~~-l~l~~~a~slG~~~SLi~~p~~~sh 421 (464)
T PLN02509 350 PRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFS-FITGS------VALSKHLVET-TKYFSIAVSFGSVKSLISMPCFMSH 421 (464)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCCceEEE-EEeCC------HHHHHHHHHc-CCcceEcccCCCCCceeeCCccccc
Confidence 222 11 11244443 45521 1222334433 332222222222110
Q ss_pred C-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 301 C-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 301 ~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
. ..++-+|+|++ -|+.+++++.|.++++.
T Consensus 422 ~~~~~~~~~~~Gi~~~liRlSvG---lE~~~DLi~Dl~~Al~~ 461 (464)
T PLN02509 422 ASIPAEVREARGLTEDLVRISAG---IEDVDDLISDLDIAFRT 461 (464)
T ss_pred ccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHcc
Confidence 0 02357999999 67888899999988753
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=160.18 Aligned_cols=281 Identities=12% Similarity=0.091 Sum_probs=191.0
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh--hhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD--IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~--~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
+.++++.++|+++++++.++++||+.|++..-+|-...+. +. ..+ .+.+++..+..+..+++++++..++....+.
T Consensus 51 ~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~-~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~ 128 (342)
T COG2008 51 EAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPE-FFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHH 128 (342)
T ss_pred ceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceecccCcHH-HHc-CCceeccCCCCCCCcCHHHHHHhhcCCCccc
Confidence 8899999999999999999999999999998888765543 22 222 2233344335667899999999988732244
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccc--cccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIY--GGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
.++.++++.+++|..|+++|.+++++|.++|+++|+++++|.+= .....-+ ++...+. ...+.+..++|
T Consensus 129 ~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg---~~~~~~~------~~~D~v~~~~t 199 (342)
T COG2008 129 APTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG---VALKTIK------SYVDSVSFCLT 199 (342)
T ss_pred CCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC---CCHHHHH------hhCCEEEEecc
Confidence 55666777777778999999999999999999999999999871 1111112 2333332 45556667899
Q ss_pred ccCCCCCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
|..+.+ +|.|+..+.++.+.++..+.. +..+.+...+...++++.-| ....++-.++++++.+.|+..
T Consensus 200 K~g~~~---~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~-----~~~~~Han~mA~~La~~~~~~ 271 (342)
T COG2008 200 KGGGAP---VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVW-----RLAADHANAMAARLAEGLEAK 271 (342)
T ss_pred cCCcce---eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHhhhhc
Confidence 988755 588887799999988765333 23344444555555554322 223334445688899999855
Q ss_pred -CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHH
Q 019899 250 -GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQ 327 (334)
Q Consensus 250 -g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~ 327 (334)
|+++..|.....+++++++... ........ +...|+.+.++. ..+|+.+++ ++++++++++..++
T Consensus 272 ~G~~~~~~~~tN~vf~~l~~~~i-----~~l~~~~~-~~~~~~~~~~~~-------~~vRfvts~a~~~edv~~~~~~~~ 338 (342)
T COG2008 272 PGVKLAFPVETNMVFVRLPESAI-----EALRLAGA-LFYRGVLIGAHG-------EIVRFVTSWATSEEDVDELVAAIK 338 (342)
T ss_pred CCceeccCCcccEEEEECChHHH-----HHHHhhch-hheeeeeccCCC-------ceEEEEeeccCCHHHHHHHHHHHH
Confidence 9998876556667788886311 11111122 222344433221 368999997 79999999999998
Q ss_pred HHH
Q 019899 328 KVA 330 (334)
Q Consensus 328 ~~~ 330 (334)
+++
T Consensus 339 ~~~ 341 (342)
T COG2008 339 ALL 341 (342)
T ss_pred Hhh
Confidence 765
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=168.85 Aligned_cols=278 Identities=16% Similarity=0.139 Sum_probs=187.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhc----------CCCCeEEecCCCCCC-hhhhhhhccCc------------EEEEEeCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA----------DHGNALLVPSPYYPG-FDRDIRFRTGV------------ELIPVHCRS 73 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~----------~~gd~vl~~~p~~~~-~~~~~~~~~g~------------~v~~v~~~~ 73 (334)
.+.+++++++++|+..++..+. ...++|+....+|.+ ....+. ..+. .+..++
T Consensus 94 ~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--- 169 (401)
T TIGR01885 94 YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAIS-MSTDPDSRTNFGPYVPGFKKIP--- 169 (401)
T ss_pred CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHh-CcCCcccccccCCCCCCceEeC---
Confidence 4689999999999999988752 234678878888764 344444 3221 122333
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
..|++++++++++. +.++.+|++..+++++|...+.+ .+++|.++|++||+++|+||+|.++.+.|..+ ..
T Consensus 170 ----~~d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~ 241 (401)
T TIGR01885 170 ----YNNLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL-CV 241 (401)
T ss_pred ----CCCHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HH
Confidence 12689999888643 23677777776699999988655 69999999999999999999997765545322 11
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
.... ...+++ +++|.++..++|+|++++ ++++.+.++. ....++.+++.+.++.+.++..+ ++ .
T Consensus 242 -~~~~-----~~~di~--~~gK~l~~g~~~ig~v~~-~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~--~~---~ 307 (401)
T TIGR01885 242 -DHEN-----VKPDIV--LLGKALSGGVYPVSAVLA-DDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLE--EE---K 307 (401)
T ss_pred -hhcC-----CCCCEE--EeeccccCCCCCcEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH--hc---c
Confidence 1111 111222 467999855589999998 7888887764 22345667888888777775432 11 2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccc---CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 231 NKRRIKKLYDSFVAGLKQLGIRCS---ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~g~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
..++++++.+++.+.|++++..+. .+.+. +..+.++.... .....++...|. ++||.+.|+. ++.+
T Consensus 308 l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~-~~~i~~~~~~~---~~~~~~l~~~l~-~~Gv~v~~~~------~~~l 376 (401)
T TIGR01885 308 LAENAEKLGEIFRDQLKKLPKPIITEVRGRGL-LNAIVIDESKT---GRTAWDLCLKLK-EKGLLAKPTH------GNII 376 (401)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceeEEeecCe-eEEEEeccCcc---hhHHHHHHHHHH-hCCEEEEecC------CCEE
Confidence 345666778899999988754332 23333 33344433211 123467888855 5899997743 4689
Q ss_pred EEEecC-CCcccHHHHHHHHHHHHH
Q 019899 308 RCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 308 Ri~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
|++++. ++++++++++++|.++++
T Consensus 377 Ri~p~l~~t~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 377 RLAPPLVITEEQLDEGLEIIKKVID 401 (401)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHhC
Confidence 999864 699999999999998763
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=167.16 Aligned_cols=299 Identities=16% Similarity=0.196 Sum_probs=195.6
Q ss_pred hhcCCCCCCC-CcEEEecCcH-HHHHHHHHHhcC---CCCeEEecCCCCCChhhhhhhccCcEEEEEeC-CCCCCccccH
Q 019899 8 VLGQAVSFDP-SQIVLTAGAT-PAVEILCFCLAD---HGNALLVPSPYYPGFDRDIRFRTGVELIPVHC-RSTDNFAFSI 81 (334)
Q Consensus 8 ~~~~~~~~~~-~~i~~~~g~~-~~~~~~~~~l~~---~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~-~~~~~~~~~~ 81 (334)
.+.+.+++++ +..++++++| .++.+++.++-. +||.|+++..+|.+...++. ..|.+++.++. .+++.+.+|+
T Consensus 113 ~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~-~~G~~pv~Vd~~~d~~~~~iD~ 191 (444)
T TIGR03531 113 DFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAIS-TAGFEPRVIETVLDGDELTTDV 191 (444)
T ss_pred HHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHH-HcCCeEEEeeeeecCcCCCcCH
Confidence 3444455543 3689999999 577777777642 58999999999999999999 99999999995 3457789999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCC-CCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPA-NPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~-nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++|++. +.+..++++.+|+ +++|...+ +++|.++|++||+++|+|++|+... .....+... +
T Consensus 192 e~Le~aIt~~---~~kai~~Vv~Tp~t~~~g~~dd---L~eIa~la~k~gI~lIvDaAyg~~~------~~~~~~~~~-g 258 (444)
T TIGR03531 192 EDIERAIEEI---GPDNILCVLSTTSCFAPRSPDD---IEEIAKICANYDIPHIVNNAYGLQS------NKYMELINK-A 258 (444)
T ss_pred HHHHHHHHhc---cCCCEEEEEEcCCcCCCcchhC---HHHHHHHHHHcCCEEEEECcCcCcC------hhhhhhhhc-c
Confidence 9999999852 1144556666664 34444444 9999999999999999999998521 111111100 1
Q ss_pred cCCCc-EEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDR-VHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 161 ~~~~~-~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
.+.++ ++++.|++|.+.++|. .|+++++++++.+.+.........+.+.+.+...++..+ .+.+.++.++..+++
T Consensus 259 ~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G---~~g~~~li~~~~~~a 334 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLG---SKGYLELLKERKEMY 334 (444)
T ss_pred ccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhC---HHHHHHHHHHHHHHH
Confidence 11222 5677899999987664 455556788998888764333334456676666666433 345577777777888
Q ss_pred HHHHHHHHhC----CCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe----EEcCCC-------C---cC
Q 019899 240 DSFVAGLKQL----GIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI----NVTPGS-------A---CH 300 (334)
Q Consensus 240 ~~~~~~l~~~----g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi----~v~~g~-------~---~~ 300 (334)
+++.+.|++. |.++. .|.+...+.+.+.... ..+...+-..|.. ++| .|.||. . ||
T Consensus 335 ~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~----~~~~~~~g~~l~~-~~v~g~r~v~~~~~~~~~~~~~~~~~ 409 (444)
T TIGR03531 335 KYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK----GKDPTMLGSMLYS-RRVTGPRVVTNGDSKTVGGCEFKGYG 409 (444)
T ss_pred HHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc----ccCHHHHHHHHHh-CCCCCceeecCCCceEECCEEeeccc
Confidence 8888888664 66655 3455555545554321 1233445555433 565 244555 1 22
Q ss_pred CCCC----CeEEEEec-CCCcccHHHHHHHHHHH
Q 019899 301 CIEP----GWFRCCFT-SLTHEDIPLVIERIQKV 329 (334)
Q Consensus 301 ~~~~----~~iRi~~~-~~~~~~l~~~l~~l~~~ 329 (334)
...+ .|+-++.+ .++.+|++.++++|.++
T Consensus 410 ~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 410 SHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred ccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 2111 25555433 17899999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-20 Score=165.26 Aligned_cols=290 Identities=15% Similarity=0.132 Sum_probs=185.9
Q ss_pred CcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC-------------cEEEEEeCCCCCCccc---
Q 019899 18 SQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG-------------VELIPVHCRSTDNFAF--- 79 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~~v~~~~~~~~~~--- 79 (334)
+.+++++++++|+..++.... ....+|+....+|.+......-..| ..+..+|.+.+. ..+
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~ 180 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQ 180 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHH
Confidence 589999999999999887652 2345788888888765432210111 113334432211 112
Q ss_pred -cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 80 -SITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 80 -~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
+++.+++.+++.. ...++.+|++...++|+|... |.+.+++|.++|++||+++|+||++.++.+.|.. ..+..+..
T Consensus 181 ~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~~~ 258 (421)
T PRK09792 181 DSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHYAD 258 (421)
T ss_pred HHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhcCC
Confidence 3466776665310 123677666665589999866 8899999999999999999999999998776643 23332211
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.++ +.+++|.++ +|+++||+++ ++++.+.+.. +...++.+++.+.++.+.++..+. .+.+. ++
T Consensus 259 ----~pD----i~t~gK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-~~~~~----~~ 323 (421)
T PRK09792 259 ----KPD----LMTMAKSLA-GGMPLSGVVG-NANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK-ESLCE----RA 323 (421)
T ss_pred ----CCc----EEEeehhhc-CCCceEEEEE-cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-hhHHH----HH
Confidence 122 578999998 9999999998 8888877753 344567888888866666543221 11222 23
Q ss_pred HHHHHHHHHHHHh----CCCcccCCCc-eeEEeeecCCcCCC-CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEE
Q 019899 236 KKLYDSFVAGLKQ----LGIRCSESSA-GLYCWADMSGLIPS-YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRC 309 (334)
Q Consensus 236 ~~~~~~~~~~l~~----~g~~~~~~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi 309 (334)
++..+++.+.|+. ++. +....+ |+++|++++..... ........+...+++ +||.+.+... ..+.+|+
T Consensus 324 ~~~g~~l~~~l~~l~~~~p~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~g~----~~~~irl 397 (421)
T PRK09792 324 NQLGQRLKNTLIDAKESVPA-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA-QGLLLLTCGA----YGNVIRF 397 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCC-cceecccceEEEEEecCCccCCcchHHHHHHHHHHHH-CCcEEeecCC----CCCEEEE
Confidence 3333333333333 333 234445 89999999753211 111234567777555 8999854211 2478999
Q ss_pred EecC-CCcccHHHHHHHHHHHHH
Q 019899 310 CFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 310 ~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
.++. +++++++++++++.++++
T Consensus 398 ~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 398 LYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred eCCCcCCHHHHHHHHHHHHHHHh
Confidence 9886 699999999999999875
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-20 Score=164.37 Aligned_cols=281 Identities=11% Similarity=0.034 Sum_probs=194.0
Q ss_pred hcCCCCCCCCcE--EEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 9 LGQAVSFDPSQI--VLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 9 ~~~~~~~~~~~i--~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.++++++++ ++|+|+|+++..++... ..++++|++++..|++....++ .+|.+.+.+++. .++.+|+++|
T Consensus 74 ~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~-~lg~~~~~V~~~--~~g~id~~~L 150 (380)
T PRK02769 74 FAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIAR-LLRIKSRVITSL--PNGEIDYDDL 150 (380)
T ss_pred HHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHH-HcCCCCceeccC--CCCcCcHHHH
Confidence 344455666665 88999999987776543 2467899999999999999998 889888888874 3557999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC---cEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN---IHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~---~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
++++++. +.++.+|+++.++|++|.+.| +++|.++|+++| +++++|.+|+.+..+-..... .+ +.
T Consensus 151 ~~~i~~~---~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~--~~----d~ 218 (380)
T PRK02769 151 ISKIKEN---KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPP--PF----SF 218 (380)
T ss_pred HHHHHhC---CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCccc--cC----Cc
Confidence 9999863 345889999999999999999 899999999998 699999999875432111000 01 11
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc---------ccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR---------FCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
..+.+.+..|.+|.++ ...++|+++.+ ++..+.+..... .++.+.....++...++... ...+.+..
T Consensus 219 ~~~vDsis~s~HK~~~-~P~g~G~l~~r-~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg--~~G~~~~~ 294 (380)
T PRK02769 219 ADGIDSIAISGHKFIG-SPMPCGIVLAK-KKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLG--SKGLRQRV 294 (380)
T ss_pred cCCCCEEEECCcccCC-CCCCcEEEEEe-hhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHC--HHHHHHHH
Confidence 1345667789999886 44568999984 444444422111 11223334444444444322 34457788
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT 312 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~ 312 (334)
++..+..+++.+.|++.|++....+....+.+..|. .++ . .|-.+.+. ..++|+++.
T Consensus 295 ~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~----------~~~----~--~~w~l~~~-------~~~~hi~~~ 351 (380)
T PRK02769 295 QHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS----------ERI----W--KKWHLATS-------GNQAHIITM 351 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC----------HHH----H--hCeeEccc-------CCEEEEEEC
Confidence 889999999999999888887654444444444332 122 1 34444322 247999988
Q ss_pred C-CCcccHHHHHHHHHHHHH
Q 019899 313 S-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 313 ~-~~~~~l~~~l~~l~~~~~ 331 (334)
. .+.+.++.+++.|.+...
T Consensus 352 ~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 352 PHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 5 688899999999988765
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=166.49 Aligned_cols=294 Identities=11% Similarity=0.092 Sum_probs=175.3
Q ss_pred CcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC-------------cEEEEEeCCCCC--Ccccc
Q 019899 18 SQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG-------------VELIPVHCRSTD--NFAFS 80 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~~v~~~~~~--~~~~~ 80 (334)
+.+++++++++|+..++.... ....+|+....+|.+......-..+ ..+..+|.++.. .....
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLT 195 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCc
Confidence 589999999999999987642 3345788888888765433220212 112333321110 01111
Q ss_pred --------HHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHH-HHHHHHHHHHhcCcEEEEeccccccccCCCCcc
Q 019899 81 --------ITALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRE-TLYELLDFAREKNIHVISDEIYGGSIFGNEEFV 150 (334)
Q Consensus 81 --------~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~-~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~ 150 (334)
++.+++.+.+.. ..+++. .++..| +...|.+.+.+ .+++|.++|++||+++|+||+|.++.+.+.. .
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~iA-avi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~-~ 272 (451)
T PRK06918 196 EEQYDDFMIEEFKNFFISEV-APETIA-AVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKY-F 272 (451)
T ss_pred hHHHHHHHHHHHHHHHHhhc-CCCceE-EEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCce-e
Confidence 123333332110 123455 455556 55567766554 5999999999999999999999998776642 2
Q ss_pred hhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChH--HHHH
Q 019899 151 SMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTK--FIQE 226 (334)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~ 226 (334)
.+..+.. .++ +.|+||.++ +|+|+||+++ ++++.+.+... ...++.+++.+.++.+.++..+ .+.+
T Consensus 273 a~~~~~v----~pD----i~t~sK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~ 342 (451)
T PRK06918 273 AIEHFDV----VPD----LITVSKSLG-AGVPISGVIG-RKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLND 342 (451)
T ss_pred hhHhcCC----CCC----EEeeehhhc-CCCccEEEEE-cHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHH
Confidence 3333221 122 458999998 9999999998 78888877532 3446788888888766664221 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCceeEEeeecCCcCC-CCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQLGI-RCSESSAGLYCWADMSGLIP-SYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
+..++.+++.+..+.+. .++++ ..+.+.++++.|........ .........+... +.++||.+.|+..| .
T Consensus 343 ~~~~~g~~l~~~l~~l~---~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~Gvlv~~~~~~----~ 414 (451)
T PRK06918 343 RAIELGKVVMNRFEEMK---NKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKE-ANKRGLLLLSAGTY----G 414 (451)
T ss_pred HHHHHHHHHHHHHHHHH---hhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHH-HHHCCeEEeecCCC----C
Confidence 23333333322222222 12222 22345566666544321110 0111223445555 45589999987655 3
Q ss_pred CeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 305 GWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 305 ~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+++|++++. ++++++++++++|.+++++
T Consensus 415 ~~lrl~p~l~~t~~~id~~l~~l~~~l~~ 443 (451)
T PRK06918 415 NVIRVLMPLVITDEQLEEGLTIIEESLQA 443 (451)
T ss_pred CEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 689999875 6899999999999999875
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-20 Score=165.16 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=122.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+++.++...+. +..++++++++|+.+++.+++++||+|+++...|.+....+. ...|.+++.++.. |+
T Consensus 69 le~~lA~l~g~--~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-------d~ 139 (433)
T PRK08134 69 LEERVAALEGG--VGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-------DI 139 (433)
T ss_pred HHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-------CH
Confidence 44555544443 357999999999999999999999999999999987655442 1479999999852 78
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
++++++|++ ++++|++.+|+||+|.+.| +++|+++|+++|+++|+|.++..... ..++ .
T Consensus 140 ~~l~~~i~~------~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~----~~pl----~---- 198 (433)
T PRK08134 140 DGWRAAIRP------NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL----LRPF----E---- 198 (433)
T ss_pred HHHHHhcCC------CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc----CCch----h----
Confidence 999999986 8999999999999999999 99999999999999999999864211 1111 1
Q ss_pred CCCcEEEEecccccCCCCCceEEEEee
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYS 188 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~ 188 (334)
.+.++++.|.+|.++.+|..+|.+++
T Consensus 199 -~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 199 -HGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred -cCCCEEEeccccccCCCCCceEEEEE
Confidence 57789999999999877866666654
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-20 Score=163.95 Aligned_cols=295 Identities=15% Similarity=0.137 Sum_probs=188.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.++. ++.++++|+++|+..++.++ +++||+|+++.++|.++...+. ..|++++.+++++ +.+.+|+++
T Consensus 34 le~~la~~~g~--~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~-~~G~~~~~~~~~~-~~~~~d~~~ 109 (380)
T TIGR03588 34 FEEALAEYVGA--KYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCAL-YCGAKVDFVDIDP-DTGNIDEDA 109 (380)
T ss_pred HHHHHHHHHCC--CeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-HcCCEEEEEecCC-CcCCcCHHH
Confidence 44555555544 45677788999999999998 7899999999999999988888 8999999999854 346799999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++. ...++++|+++ |++|...+ +++|.++|+++|++||+|++|+.+. +.+..... .
T Consensus 110 l~~~i~~~--~~~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~----~------ 171 (380)
T TIGR03588 110 LEKKLAAA--KGKLPKAIVPV---DFAGKSVD---MQAIAALAKKHGLKIIEDASHALGAEYGGKPVGN----C------ 171 (380)
T ss_pred HHHHhhcc--cCCCceEEEEe---CCCCccCC---HHHHHHHHHHcCCEEEEECCCcccCccCCEeCCC----c------
Confidence 99999731 00167877765 56898888 8999999999999999999998642 32211111 0
Q ss_pred CCcEEEEeccc--ccCCCCCceEEEEeecCHHHHHHHHHhhcccCC-Ch---------------------HHHHHHHHhh
Q 019899 163 KDRVHIIYGLS--KDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSI-SA---------------------PTQRLLISML 218 (334)
Q Consensus 163 ~~~~~~~~s~s--K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~-~~---------------------~~~~~~~~~l 218 (334)
...++.+.|++ |.++ .| ..|+++..++++.++++........ +. ..+..+.+++
T Consensus 172 ~~~d~~~~S~~~~K~~~-~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~ 249 (380)
T TIGR03588 172 RYADATVFSFHPVKIIT-TA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAAL 249 (380)
T ss_pred cccceEEEecCCCCccc-cc-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHH
Confidence 12256666765 8785 33 4677887788888877654321100 00 0001111111
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCC----ce-eEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE
Q 019899 219 SDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IRCSESS----AG-LYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
...+ .+.+.+..++-+++.+++.+.|.+.+ +....+. .. +...+.++.. . ..+..++... |+++||.
T Consensus 250 g~~q--L~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~---~~~r~~l~~~-L~~~gI~ 322 (380)
T TIGR03588 250 GLSQ--LKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE-F---GCTRKEVFEA-LRAAGIG 322 (380)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc-C---CCCHHHHHHH-HHHCCCC
Confidence 1111 12245566666777788888887763 4433221 11 2222333321 1 1244677787 5668998
Q ss_pred EcCCCCc-----------CCC--------CCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 293 VTPGSAC-----------HCI--------EPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 293 v~~g~~~-----------~~~--------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+++.... ... ..+.+++.+.. .+++|++..++.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 323 VQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred cccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 7633211 000 01457777775 69999999999998864
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=162.40 Aligned_cols=282 Identities=15% Similarity=0.102 Sum_probs=184.2
Q ss_pred CcEEEecCcHHHHHHHHHHhc------C---CCCeEEecCCCCCChhhhhhhccCcEEEE---EeCCCC--CCccccHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLA------D---HGNALLVPSPYYPGFDRDIRFRTGVELIP---VHCRST--DNFAFSITA 83 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~------~---~gd~vl~~~p~~~~~~~~~~~~~g~~v~~---v~~~~~--~~~~~~~~~ 83 (334)
+.+++++++++|+..++.... + ...+|+....+|.+......-..+..... -+..+. .-.-.|++.
T Consensus 99 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 178 (408)
T PRK04612 99 EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEA 178 (408)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHH
Confidence 689999999999999887542 1 13468888888877543322022211111 011000 000126788
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCC--HHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIP--RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~--~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
++++++. +..+.++..|.+++|-+++ .+.+++|.++|++||+++|+||+|.++...|..+ ....
T Consensus 179 l~~~~~~------~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~----a~~~---- 244 (408)
T PRK04612 179 LEAAMAG------GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLF----AHWQ---- 244 (408)
T ss_pred HHHhhCC------CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchh----hhhh----
Confidence 8887753 3445777778776666555 5689999999999999999999999876655321 1111
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
.+.+..+.+++|.++ +|+++|++++ ++++.+.+... ...++.+++.+.++.+.++..+ + ..+.++++++.
T Consensus 245 -~~~~pdi~t~~K~l~-~G~piga~~~-~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~---~--~~l~~~~~~~g 316 (408)
T PRK04612 245 -EQVTPDIVTLAKALG-GGFPIGAMLA-GPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLA---S--PQIAANVARQS 316 (408)
T ss_pred -cCCCCCEEEEcchhc-CCCceEEEEE-CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHH
Confidence 355567789999998 8999999998 67777776542 3346678888888888875432 1 24455666666
Q ss_pred HHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-C
Q 019899 240 DSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-L 314 (334)
Q Consensus 240 ~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~ 314 (334)
+++.+.|+++ ++......-|.++.+.+.+... ....++... +.++||.+.|.. .+.+|+..+. +
T Consensus 317 ~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~----~~a~~i~~~-l~~~Gvlv~~~g------~~~lRl~Ppl~i 385 (408)
T PRK04612 317 AALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHA----GQAGAILDL-AAEHGLLLLQAG------PDVLRFVPALNL 385 (408)
T ss_pred HHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchh----hHHHHHHHH-HHHCCeEEeeCC------CCEEEEcCCccC
Confidence 7777776654 2211122235556566642111 123456666 555899997632 3679998774 6
Q ss_pred CcccHHHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVAET 332 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~ 332 (334)
+++|++++++++.+++++
T Consensus 386 t~eeid~~l~~l~~~l~~ 403 (408)
T PRK04612 386 TDAELADGLARLRLALAD 403 (408)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998865
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=166.80 Aligned_cols=281 Identities=15% Similarity=0.144 Sum_probs=180.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhcC---------CC-CeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLAD---------HG-NALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRST 74 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~---------~g-d~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~ 74 (334)
.+.+++++++++|+..++..... ++ .+|+....+|.+......-..+- .+..++.
T Consensus 132 ~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~--- 208 (474)
T PLN02624 132 YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF--- 208 (474)
T ss_pred CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC---
Confidence 46899999999999999864421 12 25676677776653222102111 1222221
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHH-HHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET-LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~-l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
.|++.+++.++. ++.++.+|++..++|++|.+++.++ +++|.++|++||+++|+||+|.++.+.|..+..
T Consensus 209 ----~d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~-- 279 (474)
T PLN02624 209 ----GDLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLAC-- 279 (474)
T ss_pred ----CCHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhH--
Confidence 267888888864 2346888888888999999998775 999999999999999999999876555532211
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCChHHHHHHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDTKFIQEYLETN 231 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (334)
... +. .. .+.+++|.+|..++++|+++. ++++.+.+.... ..++.+++.+.++.+.++..+ + ...
T Consensus 280 ~~~---~i-~p---Div~lsK~lggG~~pigav~~-~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~--~---~~l 346 (474)
T PLN02624 280 DWE---EV-RP---DVVILGKALGGGVIPVSAVLA-DKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQ--D---EKL 346 (474)
T ss_pred Hhc---CC-CC---CEEEecccccCCCCcceeeee-cHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHH--h---chH
Confidence 111 11 11 133478999855689999998 777777765332 345678888888777775322 1 122
Q ss_pred HHHHHHHHHHHHHHHHhCC------CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCC
Q 019899 232 KRRIKKLYDSFVAGLKQLG------IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305 (334)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~ 305 (334)
.++..++.+++.+.|+++. +....+. |.+..+.+..... ....+.++... +.++||.+.|+. ++
T Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~-G~~~~i~l~~~~~--~~~~a~~~~~~-L~e~GV~v~p~~------~~ 416 (474)
T PLN02624 347 AERSAKLGQELRDQLQKIQKQFPKLIKEVRGR-GLLNAVVLNSPKL--GPVSAYDVCLK-LKERGLLAKPTH------DT 416 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEEEee-EEEEEEEecCCCc--ChHHHHHHHHH-HHhCCeEEecCC------CC
Confidence 3344444555555554431 2222333 4444445532210 01234577777 456899998753 47
Q ss_pred eEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 306 WFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 306 ~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++||+++. .+++++++++++|.+++++
T Consensus 417 ~lR~~p~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 417 IIRLAPPLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 89999763 6999999999999998865
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-19 Score=161.12 Aligned_cols=292 Identities=14% Similarity=0.117 Sum_probs=181.5
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhh-hhhccC------------cEEEEEeCCCCCC--cc
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRD-IRFRTG------------VELIPVHCRSTDN--FA 78 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~-~~~~~g------------~~v~~v~~~~~~~--~~ 78 (334)
..+.+++++++++|+..++.... ....+|+....+|.+.... +. ..| ..+..+|.++... +.
T Consensus 100 ~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (443)
T PRK08360 100 DNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMS-LTGLDFPVRALVGELSDVHYIPYPDCYRCPFG 178 (443)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHH-hcCCCcccccCCCCCCCcEEEeCCcccccccc
Confidence 33689999999999999987642 3445787777777664322 22 112 1233343321100 00
Q ss_pred --------ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCcEEEEeccccccccCCCCc
Q 019899 79 --------FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIP-RETLYELLDFAREKNIHVISDEIYGGSIFGNEEF 149 (334)
Q Consensus 79 --------~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~ 149 (334)
.+++.+++.++.. ..+.++.+|++...+||+|.+++ .+.++++.++|++||+++|+||+|.++.+.|..+
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~-~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~ 257 (443)
T PRK08360 179 KEPGSCKMECVEYIKEKFEGE-VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWF 257 (443)
T ss_pred CchhhhHHHHHHHHHHHHHhc-cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccch
Confidence 1234455555431 11246887777644799999887 4479999999999999999999999876655422
Q ss_pred c-hhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHH
Q 019899 150 V-SMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
. ....+ .++ +.++||.++ +|+|+||+++ ++++.+.+... ...++.++..+.++.+.++..+ +
T Consensus 258 a~~~~~~------~pD----iitlsK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~--~- 322 (443)
T PRK08360 258 AIEHFGV------EPD----IITLGKPLG-GGLPISATIG-RAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIE--E- 322 (443)
T ss_pred hhhhcCC------CCC----EEEeccccc-CCceeEEEEE-cHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHH--H-
Confidence 1 11111 122 236799999 9999999998 78888888643 3345677888888777775432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
....++++++-+++.+.|++. ++......-|.++.+++...... ........+...+ .++||.+.+..
T Consensus 323 --~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~--- 396 (443)
T PRK08360 323 --KNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRA-WELGLIVTFFS--- 396 (443)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHH-HHCCeEEeecC---
Confidence 123445555556666666543 22111122355555665322110 0112234566664 45899886422
Q ss_pred CCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 301 CIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 301 ~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.+|++.+. +++++++++++++.+++++.
T Consensus 397 ---~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 397 ---GNVLRIQPPLTIEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3679998774 69999999999999998753
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-19 Score=162.77 Aligned_cols=292 Identities=13% Similarity=0.100 Sum_probs=186.7
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCc-------------EEEEEeCCCCCC---cc
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGV-------------ELIPVHCRSTDN---FA 78 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~-------------~v~~v~~~~~~~---~~ 78 (334)
.+.+++++++++|+..++.... ....+|+....+|.+......-..+. .+..++.++... ..
T Consensus 101 ~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 180 (421)
T PRK06777 101 PAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVE 180 (421)
T ss_pred CceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHH
Confidence 4689999999999999887542 23457888888887664332202221 012222211000 11
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
.+++.+++.+++. ....++.+|++...+++.|. +.+.+.++++.++|++||+++|+||+|.++.+.+.. .......
T Consensus 181 ~~~~~l~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~-~~~~~~~- 257 (421)
T PRK06777 181 EALSSVERLFKAD-IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKL-FAMEYYD- 257 (421)
T ss_pred HHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCch-hhhhhcC-
Confidence 2356677766531 11235666666544788886 578899999999999999999999999987665532 1222111
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
..++ +.++||.++ +|+|+||+++ ++++.+.+... ...++.+++.+.++.+.++..+ + ..+.+++
T Consensus 258 ---~~pD----iv~~sK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~---~--~~l~~~~ 323 (421)
T PRK06777 258 ---VKPD----LITMAKSLG-GGMPISAVVG-RAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIA---E--EKLCQRA 323 (421)
T ss_pred ---CCCC----EEeeehhhc-CCCceEEEEE-cHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHH---h--ccHHHHH
Confidence 1122 337999999 9999999998 78888877532 3456778999988888885422 1 3455666
Q ss_pred HHHHHHHHHHHHhC----C-CcccCCCceeEEeeecCCcCC-CCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEE
Q 019899 236 KKLYDSFVAGLKQL----G-IRCSESSAGLYCWADMSGLIP-SYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRC 309 (334)
Q Consensus 236 ~~~~~~~~~~l~~~----g-~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi 309 (334)
+++.+++.+.|++. + +....+.+.++. +.+..... .....-...+... +.++||.+.|+..++ +++|+
T Consensus 324 ~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~-i~~~~~~~~~~~~~~~~~l~~~-~~~~Gv~i~~~~~~g----~~lr~ 397 (421)
T PRK06777 324 LILGAHLVEVLEKAKASCPAIVDIRARGSMVA-VEFNDPQTGKPSPEFTRQYQRQ-ALEEGLLLLSCGVHG----NVIRF 397 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEecCceEEEE-EEEecCccCCccHHHHHHHHHH-HHhCCeEEeecCCCC----CEEEE
Confidence 67777777777664 2 222355555554 44432111 1111122334444 345899999876553 68999
Q ss_pred EecC-CCcccHHHHHHHHHHHHH
Q 019899 310 CFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 310 ~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
.++. ++++++++++++|.+++.
T Consensus 398 ~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 398 LYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 9863 699999999999998874
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=162.07 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=115.4
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
.+..++++++++|+.+++.+++++||+|+++.+.|.+.... +. ..|.+++.++. .|++++++++++
T Consensus 78 ~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~-~~G~~v~~vd~-------~d~~~l~~ai~~-- 147 (427)
T PRK05994 78 GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFK-SFGWQVRWADA-------DDPASFERAITP-- 147 (427)
T ss_pred CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHH-hcCcEEEEECC-------CCHHHHHHhcCc--
Confidence 34588999999999999999999999999999999975543 44 67999988874 278899998875
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
++++|++++|+||+|.+.| +++|.++|+++|+++|+|++|.... .. ..+ +.+.++++.|+
T Consensus 148 ----~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~----~~---~pl------~~gaDivv~S~ 207 (427)
T PRK05994 148 ----RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPY----LI---RPI------EHGADIVVHSL 207 (427)
T ss_pred ----CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccc----cC---Ccc------ccCCcEEEEcC
Confidence 7999999999999999999 8999999999999999999986411 11 111 15667899999
Q ss_pred cccCCCCCceEEEEee
Q 019899 173 SKDLSLPGFRTGVIYS 188 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~ 188 (334)
+|.+|.+|-.+|.+++
T Consensus 208 tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 208 TKFLGGHGNSMGGIIV 223 (427)
T ss_pred ccccCCCCCcEEEEEE
Confidence 9999866655665554
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=167.01 Aligned_cols=315 Identities=14% Similarity=0.118 Sum_probs=202.9
Q ss_pred hhhhhhhhcCCCCCC-----CCcEEEecCcHHHHHHHHHHhcC-----------CCCeEEecCCCCCChhhhhhhccCcE
Q 019899 2 AGFMSQVLGQAVSFD-----PSQIVLTAGATPAVEILCFCLAD-----------HGNALLVPSPYYPGFDRDIRFRTGVE 65 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~-----~~~i~~~~g~~~~~~~~~~~l~~-----------~gd~vl~~~p~~~~~~~~~~~~~g~~ 65 (334)
.+|+.+.++ ++-. ...-++|+|+|+++..++.+.-+ +.-.|++++.+|.+...++. .+|..
T Consensus 128 i~wl~~l~g--~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~-~lGlg 204 (490)
T PLN02880 128 LDWLAKLLN--LPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ-IAGIH 204 (490)
T ss_pred HHHHHHHhC--CCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH-HcCCC
Confidence 357777665 3311 12467789999998777655321 12256678889999999998 88874
Q ss_pred ---EEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 66 ---LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 66 ---v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
++.||++..+++.+|++.|+++|++....|..+-+|+.+..++++|.+.| +++|.++|++||+|++||.+|+++
T Consensus 205 ~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~~~~iwlHVDaA~gg~ 281 (490)
T PLN02880 205 PENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAKSNGMWFHVDAAYAGS 281 (490)
T ss_pred HHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHHHcCCEEEEehhhHHH
Confidence 78899865557799999999999987777777888888888999999999 999999999999999999999875
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHH-HHHHHHhhccc----------------C
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV-LAAAKKLTRFC----------------S 205 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~-~~~~~~~~~~~----------------~ 205 (334)
....+ .+..... ++ ...+.+..++||+++ .+..+|+++.+++.. .+.+.....+. +
T Consensus 282 ~~~~~---~~~~~l~--gi-e~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~ 354 (490)
T PLN02880 282 ACICP---EYRHYID--GV-EEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQ 354 (490)
T ss_pred HHhCH---HHHHHhc--Cc-hhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccC
Confidence 43211 1111111 11 234567789999986 778899999865443 23222111110 0
Q ss_pred C-ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCC--ChhhHHHH
Q 019899 206 I-SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSY--SEKGELEL 281 (334)
Q Consensus 206 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~ 281 (334)
. .+....++.-++....+..+.+.++.++.-+.++++.+.|++. ++++..+.....+.+++++..... ...-..++
T Consensus 355 i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l 434 (490)
T PLN02880 355 IPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDL 434 (490)
T ss_pred cCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHH
Confidence 0 0000012222111111113445666666668889999999876 788776544333445665321110 01111346
Q ss_pred HHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 282 WDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 282 ~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
.++|.++..+.+.+...- +..++|+++.+ ++++|++.+++.+.++.++
T Consensus 435 ~~~l~~~g~~~v~~t~~~---g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~ 484 (490)
T PLN02880 435 LDAVNSSGKIFISHTVLS---GKYVLRFAVGAPLTEERHVTAAWKVLQDEASK 484 (490)
T ss_pred HHHHHhCCCEEEEEEEEC---CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 666666566666543332 24689999875 4679999999999888765
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=162.46 Aligned_cols=154 Identities=15% Similarity=0.195 Sum_probs=118.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+.+.++...+ .+..+++++++.|+..++.+++++||+|+++...|.+....+.. ..|.+++.++ + ..|+
T Consensus 74 Le~~lA~l~g--~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d-----~~d~ 145 (436)
T PRK07812 74 VEQRIAALEG--GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-D-----PDDL 145 (436)
T ss_pred HHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-C-----CCCH
Confidence 4444544333 45678888999999999999999999999999999876653321 4688887775 1 1278
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++.+|+||+|.+.| +++|.++|+++|+++|+|++++... ...+ +
T Consensus 146 e~l~~ai~~------~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~----~~~p---l------ 203 (436)
T PRK07812 146 DAWRAAVRP------NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPY----LIRP---L------ 203 (436)
T ss_pred HHHHHhCCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccc----cCCc---h------
Confidence 999998875 7899999999999999999 9999999999999999999976411 1111 1
Q ss_pred CCCcEEEEecccccCCCCCceEEEEee
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYS 188 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~ 188 (334)
+.+.++++.|++|.+|..|--+|++++
T Consensus 204 ~~GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 204 EHGADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred hcCCCEEEEecccccCCCCCeEEEEEE
Confidence 156678889999999877766777665
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=155.83 Aligned_cols=281 Identities=16% Similarity=0.142 Sum_probs=194.6
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CC---CCeEEecCCCCCCh-hhhhhhccCc------------EEEEE
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DH---GNALLVPSPYYPGF-DRDIRFRTGV------------ELIPV 69 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~---gd~vl~~~p~~~~~-~~~~~~~~g~------------~v~~v 69 (334)
.+.+..+ ..+.++++|+++||+..++.... .. .-+|+....+|.+- ...+. ..|- .+.++
T Consensus 92 ~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS-~t~~~ky~~~F~Pl~~g~~~v 169 (404)
T COG4992 92 KLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALS-ATGQPKYRKGFGPLLPGFRHV 169 (404)
T ss_pred HHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeee-ccCChhhccCCCCCCCCceec
Confidence 3433343 48899999999999999987652 11 23677766666542 22222 2221 12233
Q ss_pred eCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEEEeccccccccCCCC
Q 019899 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVISDEIYGGSIFGNEE 148 (334)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~ 148 (334)
|. .|++++++++++ ++.+|++..-+...|++.+.+ -++.+.++|++||+++|.||++.++..+|+-
T Consensus 170 pf-------nDi~al~~ai~~------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~ 236 (404)
T COG4992 170 PF-------NDIEALEAAIDE------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKL 236 (404)
T ss_pred CC-------CCHHHHHHHhcc------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchH
Confidence 32 389999999997 788788776699999977655 5999999999999999999999987776654
Q ss_pred cchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHH
Q 019899 149 FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
+..-. .+..-.+-++.|.+| .|+++|.+++ ++...+.+.. +.++|+.|+++..+..+.++... +
T Consensus 237 fA~e~---------~gV~PDI~tlaK~Lg-GG~PigA~la-~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~--~- 302 (404)
T COG4992 237 FAYEH---------YGVEPDILTLAKALG-GGFPIGAMLA-TEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLL--E- 302 (404)
T ss_pred HHHHH---------hCCCCCEEEeecccc-CCccceeeEE-chhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHc--c-
Confidence 33221 122223446889998 8899999999 5555555543 45678899999988888775422 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQL--GIRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~--g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
+...++.+++-++|.+.|+++ .+.+. ...-|+++-+++.... .+.++.+. +.++|+.+.+..
T Consensus 303 --e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~------~a~~~~~~-~~~~gvL~~~a~----- 368 (404)
T COG4992 303 --EGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY------RARDIVRA-LREEGVLVLPAG----- 368 (404)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc------cHHHHHHH-HHHCCeEEecCC-----
Confidence 334455666667777777765 22222 2234677777776543 23577787 556899988644
Q ss_pred CCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 303 EPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 303 ~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++.+|+..+- +++++++++++++.+++++
T Consensus 369 -~~ViR~~PpL~i~~eei~~~~~~l~~~l~~ 398 (404)
T COG4992 369 -PNVIRFLPPLVITEEEIDEALDALERALAA 398 (404)
T ss_pred -CCeEEecCCccCCHHHHHHHHHHHHHHHHH
Confidence 5689998775 6999999999999999875
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-19 Score=157.28 Aligned_cols=266 Identities=18% Similarity=0.232 Sum_probs=177.4
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+.++++++|..|+..++.+++++||+|+++...|.+....++. ..|.++..++. -|++++++++++
T Consensus 70 g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~-------~d~~~l~~~l~~--- 139 (386)
T PF01053_consen 70 GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP-------TDLEALEAALRP--- 139 (386)
T ss_dssp -SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST-------TSHHHHHHHHCT---
T ss_pred ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc-------hhHHHHHhhccc---
Confidence 47899999999999999999999999999999999998776662 26899988873 478999999987
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC-cEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN-IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~-~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
++++|++.+|.||+..+.| +++++++|+++| +++++|+.+... ....++. .+.++++.|.
T Consensus 140 ---~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp-------~~~~pL~------~GaDivv~S~ 200 (386)
T PF01053_consen 140 ---NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATP-------YNQNPLE------LGADIVVHSA 200 (386)
T ss_dssp ---TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHT-------TTC-GGG------GT-SEEEEET
T ss_pred ---cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccce-------eeeccCc------CCceEEEeec
Confidence 8999999999999999999 999999999998 999999998641 1222221 5778999999
Q ss_pred cccCCCCC-ceEEEEeecC-HHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019899 173 SKDLSLPG-FRTGVIYSYN-ESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248 (334)
Q Consensus 173 sK~~~~~g-~r~g~i~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (334)
+|.++..+ .=.|.+++++ +++.+.++.....++ .++.....+..-++.. .-+.++..+++..+.+.|++
T Consensus 201 TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl-------~~R~~~~~~nA~~lA~~L~~ 273 (386)
T PF01053_consen 201 TKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL-------PLRMERQNENAEALAEFLEE 273 (386)
T ss_dssp TTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHHHHHHh
Confidence 99995343 4467777655 578887776554433 3444444444444442 44556677888889999988
Q ss_pred CC-Cc-c--c---------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE---EcCCCCcC------
Q 019899 249 LG-IR-C--S---------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN---VTPGSACH------ 300 (334)
Q Consensus 249 ~g-~~-~--~---------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~---v~~g~~~~------ 300 (334)
+. ++ + + ...+| .+.+++... .+-+.++++...+. ..-|....
T Consensus 274 hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg-l~sf~l~~~---------~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~ 343 (386)
T PF01053_consen 274 HPKVKRVYYPGLPSHPQHELAKRQMSGGGG-LLSFELKGG---------EEAARRFLDALKLFSIAPSLGGVESLISHPA 343 (386)
T ss_dssp STTEEEEEETTSTTSTTHHHHHHHCSSCTS-EEEEEESSH---------HHHHHHHHHH-SSSEESSS-SSSS-EEEETT
T ss_pred CCCCCeEEEcccccccceeeeeecccccCc-eeEEEeccc---------hhhhHhHHhhhhhHhhhhhcCCccccccccc
Confidence 72 22 1 1 12234 566777653 12333334433332 11122110
Q ss_pred ----C-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 301 ----C-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 301 ----~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
. ..++.+|+|++ .|+.+.+++.|.++++
T Consensus 344 ~~~h~~~~~e~~~~~Gi~~~liRlSvG---lEd~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 344 STSHRSLSPEERAEAGISDGLIRLSVG---LEDPDDLIADLEQALE 386 (386)
T ss_dssp CTTTTTSCHHHHHHTTS-TTEEEEE-----SS-HHHHHHHHHHHHH
T ss_pred chhhccCChhhhhccCCCCCeeEEEec---cCCHHHHHHHHHHhcC
Confidence 0 12367999999 7888899999998875
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=175.50 Aligned_cols=287 Identities=11% Similarity=0.034 Sum_probs=201.2
Q ss_pred CcEEEecCcH----HHHHHHHHHhcCC-CC----eEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHH
Q 019899 18 SQIVLTAGAT----PAVEILCFCLADH-GN----ALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAF 88 (334)
Q Consensus 18 ~~i~~~~g~~----~~~~~~~~~l~~~-gd----~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l 88 (334)
+.|.++++++ ++++.++..+.++ || +|+++...|.+....+. ..|.+++.++++ .+..+|+++|++++
T Consensus 584 ~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~-~~G~~vv~v~~d--~~G~vDle~L~~~i 660 (993)
T PLN02414 584 DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA-MCGMKIVVVGTD--AKGNINIEELRKAA 660 (993)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH-HCCCEEEEeccC--CCCCcCHHHHHHHH
Confidence 8999999999 8999999998755 87 89999999999999998 899999999984 44589999999999
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEE
Q 019899 89 NQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (334)
++. ..++++|++++|+|-+|...+ +++|+++|+++|+++++|.++... ...+.... +.+.+++
T Consensus 661 ~~~---~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a------~~~l~~p~-----~~GaD~~ 723 (993)
T PLN02414 661 EAH---KDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNA------QVGLTSPG-----FIGADVC 723 (993)
T ss_pred hcc---CCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHh------ccCcCCcc-----ccCCCEE
Confidence 842 126899999999999999988 999999999999999999997431 11111111 1678899
Q ss_pred EecccccCC----CCCceEEEEeecCHHHHHHHHHh------------hc--ccCCCh------HHHHHHHHhhCChHHH
Q 019899 169 IYGLSKDLS----LPGFRTGVIYSYNESVLAAAKKL------------TR--FCSISA------PTQRLLISMLSDTKFI 224 (334)
Q Consensus 169 ~~s~sK~~~----~~g~r~g~i~~~~~~~~~~~~~~------------~~--~~~~~~------~~~~~~~~~l~~~~~~ 224 (334)
+.|.+|+++ ..|..+|.+.+ ++.+...+-.. .. .++.+. .....+..++... .
T Consensus 724 ~~s~HK~f~~P~G~GGPg~G~l~~-~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~l--G 800 (993)
T PLN02414 724 HLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMM--G 800 (993)
T ss_pred EecCCccCCcCcccCCCCeeeEEE-chhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHH--C
Confidence 999999885 23456899987 66654443211 10 112111 2222223333222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeE--EeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLY--CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
.+.+.+..++...+++++.++|++. ++.+..+.+.++ +.++++.. ...+..+..++.++|+ ++||...- ..|.
T Consensus 801 ~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l-~~~~g~~~~di~krL~-d~Gihapt-~~~p- 876 (993)
T PLN02414 801 SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPF-KNTAGIEPEDVAKRLM-DYGFHAPT-MSWP- 876 (993)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEecccc-ccccCCCHHHHHHHHH-HcCcEEee-eccc-
Confidence 4456677788888999999999773 444444443322 22444422 1111234478999977 68997543 3342
Q ss_pred CCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 302 IEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 ~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.++.+|++... .+++|+|+++++|..+.++
T Consensus 877 -v~~~lmiepTE~~skeelDrf~~al~~i~~e 907 (993)
T PLN02414 877 -VPGTLMIEPTESESKAELDRFCDALISIREE 907 (993)
T ss_pred -cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 37789999885 5899999999999888754
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-19 Score=156.99 Aligned_cols=271 Identities=11% Similarity=0.072 Sum_probs=182.4
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..++++++++|+..++.+++++||+|+++...|.+....+. ...|.++..++. .|.+++++++++
T Consensus 77 ~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-------~d~~~l~~~l~~--- 146 (395)
T PRK08114 77 GAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-------LIGADIAKLIQP--- 146 (395)
T ss_pred CCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-------CCHHHHHHhcCC---
Confidence 5688999999999999999999999999999999988776652 157999988873 367889999976
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEec
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREK--NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYG 171 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 171 (334)
++++|++.+|+||+|.+.| +++|+++|+++ |+++++|.+|+. + .. ..... .+.+++++|
T Consensus 147 ---~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~----p---~~-~~pl~-----~GaDivv~S 207 (395)
T PRK08114 147 ---NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAA----G---VL-FKALD-----FGIDISIQA 207 (395)
T ss_pred ---CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcc----c---cc-cCHHH-----cCCcEEEEc
Confidence 7999999999999999999 99999999998 499999999864 1 11 22222 688899999
Q ss_pred ccccCCCCC-ceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019899 172 LSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248 (334)
Q Consensus 172 ~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (334)
.+|+++.++ .-.|.++. +++..+.++...... ..++.....+..-++.. .-+.++..+++..+.+.|++
T Consensus 208 ~tKyl~Ghsdv~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL-------~lR~~~~~~na~~va~~L~~ 279 (395)
T PRK08114 208 GTKYLVGHSDAMIGTAVA-NARCWEQLRENSYLMGQMVDADTAYMTSRGLRTL-------GVRLRQHEESSLKVAEWLAE 279 (395)
T ss_pred CcccccCCCcceeEEEEc-CHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcH-------HHHHHHHHHHHHHHHHHHHc
Confidence 999885454 66776665 676666665433222 23444444344444432 34456677888888888887
Q ss_pred CC-Cc---cc---------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC------C--
Q 019899 249 LG-IR---CS---------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH------C-- 301 (334)
Q Consensus 249 ~g-~~---~~---------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~------~-- 301 (334)
+. ++ +. ...+| .+.+++....+ ......+.+. ++-..+.+.-|..-. +
T Consensus 280 hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg-~~sf~l~~~~~---~~~~~~f~~~-l~l~~~a~SlGg~~SLi~~~~~~~ 354 (395)
T PRK08114 280 HPEVARVNHPALPGCKGHEFWKRDFTGSSG-LFSFVLKKKLT---DEQLANYLDN-FSLFSMAYSWGGFESLILANQPEE 354 (395)
T ss_pred CCCEeEEECCCCCCCccHHHHHhhCCCCce-EEEEEecCccc---HHHHHHHHHh-CCcceeecccCCccceeccCCchh
Confidence 62 11 11 11233 34466642101 1122334333 232222222222110 0
Q ss_pred -----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 302 -----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 -----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
..++.+|+|++ -|+.+.+++.|.+++++
T Consensus 355 ~~~~~~~~~~~~~~~liRlSvG---lEd~~DLi~Dl~~Al~~ 393 (395)
T PRK08114 355 IAAIRPAGEVDFTGTLIRLHIG---LEDVDDLIADLAAGFAR 393 (395)
T ss_pred hhccCChhHhcCCCCeEEEEec---cCCHHHHHHHHHHHHHh
Confidence 01257999999 77888899999998875
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.6e-20 Score=177.42 Aligned_cols=307 Identities=15% Similarity=0.082 Sum_probs=198.5
Q ss_pred hhhhhhcCCCCCCCC--cEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhh--hccCcEEEEEeCCCC----
Q 019899 4 FMSQVLGQAVSFDPS--QIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIR--FRTGVELIPVHCRST---- 74 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~--~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~--~~~g~~v~~v~~~~~---- 74 (334)
..++.+++.++++++ +|++|+|+|+++++++..+ .++||+|+++.-.|.+.....+ ...|.++..++++.+
T Consensus 82 ~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~ 161 (805)
T PLN02724 82 SARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQP 161 (805)
T ss_pred HHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccc
Confidence 345666777888766 4899999999999999988 6789999999888888765433 135889999887421
Q ss_pred --CCccccH--HHHHHHHHH----HHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc-----CcEEEEeccccc
Q 019899 75 --DNFAFSI--TALDQAFNQ----ARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK-----NIHVISDEIYGG 141 (334)
Q Consensus 75 --~~~~~~~--~~l~~~l~~----~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~-----~~~vi~D~~~~~ 141 (334)
....+++ +++++.+++ ....+.+++++.+++.+|.||.++|.+.+..+.+.++.+ ++++++|.+++.
T Consensus 162 ~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~ 241 (805)
T PLN02724 162 TNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC 241 (805)
T ss_pred cccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc
Confidence 1112332 556655421 001123668999999999999999955443333333222 368999999875
Q ss_pred cccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--------------------
Q 019899 142 SIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-------------------- 201 (334)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-------------------- 201 (334)
+....++.. .+.++++.|++|++|.| ..+|++++ ++++.+.+....
T Consensus 242 ----g~~piDv~~--------~~~Dfl~~S~HK~~GgP-~G~G~L~v-r~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~ 307 (805)
T PLN02724 242 ----GTSPPDLSR--------YPADFVVVSFYKIFGYP-TGLGALLV-RRDAAKLLKKKYFGGGTVAASIADIDFVKRRE 307 (805)
T ss_pred ----CCCCCChhh--------cCCCEEEEecceeccCC-CCceEEEE-ehhhhhhhcCCccCCCceEEEecccceeeccc
Confidence 333444443 46678999999999722 34799988 556655544210
Q ss_pred ------cccCCChHHHHHHHHhhCChHHHHH-HHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCC--------ce
Q 019899 202 ------RFCSISAPTQRLLISMLSDTKFIQE-YLETNKRRIKKLYDSFVAGLKQL-------GIRCSESS--------AG 259 (334)
Q Consensus 202 ------~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-------g~~~~~~~--------~g 259 (334)
..++.|.+...++.++++. +.+ .+++..++..+..+++.+.|.++ +++++.+. .+
T Consensus 308 ~~~~rfE~GT~n~~~i~~l~aal~~---l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~ 384 (805)
T PLN02724 308 RVEQRFEDGTISFLSIAALRHGFKL---LNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQG 384 (805)
T ss_pred cHHHHhcCCCcchhHHHHHHHHHHH---HHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCccccc
Confidence 0123344444455544432 222 24667788888889999999876 25565432 12
Q ss_pred eEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC---------------------------------CCCe
Q 019899 260 LYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI---------------------------------EPGW 306 (334)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~---------------------------------~~~~ 306 (334)
-.+.|.+...... .-....+..++.++||.++.|..|.+. ..+.
T Consensus 385 ~ivsFnv~~~~~~---~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~ 461 (805)
T PLN02724 385 PIVTFNLKRADGS---WVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGA 461 (805)
T ss_pred CEEEEEEEcCCCC---EeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccce
Confidence 2333444332110 011234556677899999999887531 1278
Q ss_pred EEEEecC-CCcccHHHHHHHHHHHH
Q 019899 307 FRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 307 iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+|+|+++ .|.+|++++++.|++..
T Consensus 462 vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 462 VRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred EEEEcCccCCHHHHHHHHHHHHHHh
Confidence 9999997 59999999999999854
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=162.83 Aligned_cols=303 Identities=13% Similarity=0.075 Sum_probs=199.0
Q ss_pred hhhhhhhcCCCCCC-C-CcEEE--ecCcHHHHHHHHHHhc--------CC-----CCeEEecCCCCCChhhhhhhccCcE
Q 019899 3 GFMSQVLGQAVSFD-P-SQIVL--TAGATPAVEILCFCLA--------DH-----GNALLVPSPYYPGFDRDIRFRTGVE 65 (334)
Q Consensus 3 ~~~~~~~~~~~~~~-~-~~i~~--~~g~~~~~~~~~~~l~--------~~-----gd~vl~~~p~~~~~~~~~~~~~g~~ 65 (334)
+|+.+. ++++ + +++.. |+|+|++++.++.+.. .. ..+|+++.-.|+++...++ ..|.+
T Consensus 87 ~~la~l----lg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~-~lg~~ 161 (431)
T TIGR01788 87 NMLADL----WHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFAR-YFDVE 161 (431)
T ss_pred HHHHHH----hCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHH-HcCce
Confidence 445544 4455 3 45554 8999999999876542 11 2369999999999999988 88999
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc------CcEEEEeccc
Q 019899 66 LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK------NIHVISDEIY 139 (334)
Q Consensus 66 v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~vi~D~~~ 139 (334)
++.+|+++ +++.+|+++|+++|++ ++.+|.++..+|.||.+.| +++|.++|+++ ++++++|.+|
T Consensus 162 v~~i~~d~-~~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq 231 (431)
T TIGR01788 162 LREVPMDP-GRYVIDPEQVVEAVDE------NTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWDIPIHVDAAS 231 (431)
T ss_pred eEEEecCC-CceeeCHHHHHHHHhh------CCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCCceEEEeccc
Confidence 99999853 4458999999999987 7888999999999999999 99999999999 9999999999
Q ss_pred ccccc---CCCCcchhhhhhhccccCCCcEEEEecccccC-CCCCceEEEEeecCHH-HHHHHHHhhcc---------cC
Q 019899 140 GGSIF---GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDL-SLPGFRTGVIYSYNES-VLAAAKKLTRF---------CS 205 (334)
Q Consensus 140 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~-~~~~~~~~~~~---------~~ 205 (334)
+.+.. -+.....+. ..+.+.+..|.||+. +.. .+|+++.++++ +.+.+.....+ ..
T Consensus 232 ~g~~~p~~~~~~~~~~~--------~~~~DSis~s~HK~~~~P~--g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~ 301 (431)
T TIGR01788 232 GGFIAPFVYPDLEWDFR--------LPRVKSINVSGHKYGLVYP--GVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLN 301 (431)
T ss_pred HHHHHHHhCCCchhhcC--------CCCceEEEECchhccCCCC--CcEEEEEeChHHcchhheecccccCCCCCCccee
Confidence 86431 111111111 034556777999976 444 47888886654 32333211111 11
Q ss_pred CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CceeEEeeecCCcCCCCChhhHHHHH
Q 019899 206 ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES--SAGLYCWADMSGLIPSYSEKGELELW 282 (334)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~ 282 (334)
.+.....++..++....+...-+++..++..++.+++.+.|++. ++++..+ ..+.++ |++..... ...+..++.
T Consensus 302 ~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~-Fr~~~~~~--~~~~~~~l~ 378 (431)
T TIGR01788 302 FSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVA-FKLKDDAD--PGYTLYDLS 378 (431)
T ss_pred cCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEE-EEeCCCCC--CCcCHHHHH
Confidence 12222122223322111113446777888899999999999988 5887754 444443 55543211 112345677
Q ss_pred HHHHHhcCeEEcCCCCc-CCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 283 DKLLNIAKINVTPGSAC-HCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 283 ~~ll~~~gi~v~~g~~~-~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
+. |.+.|+.+..-... .......+|+++.+ .+++.++.+++.|++++..++
T Consensus 379 ~~-L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (431)
T TIGR01788 379 HR-LRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYLE 431 (431)
T ss_pred HH-HHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhhC
Confidence 77 55689865322211 01123468999864 688999999999999987653
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-19 Score=162.48 Aligned_cols=315 Identities=14% Similarity=0.115 Sum_probs=205.9
Q ss_pred hhhhhhhhcCCCCCC-----CCcEEEecCcHHHHHHHHHHhcC-----------CCCeEEecCCCCCChhhhhhhccCc-
Q 019899 2 AGFMSQVLGQAVSFD-----PSQIVLTAGATPAVEILCFCLAD-----------HGNALLVPSPYYPGFDRDIRFRTGV- 64 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~-----~~~i~~~~g~~~~~~~~~~~l~~-----------~gd~vl~~~p~~~~~~~~~~~~~g~- 64 (334)
-+|+.+.++ ++-. ...=++++|+|+++..++.+.-. +.-.|++++.+|+++..++. .+|.
T Consensus 176 i~wl~~l~g--lp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~-ilGlg 252 (539)
T PLN02590 176 LDWLAKLLQ--LPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACL-IGGIH 252 (539)
T ss_pred HHHHHHHhC--CCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHH-HcCCC
Confidence 467777766 4321 13456789999988777665321 12256667889999999998 8886
Q ss_pred --EEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 65 --ELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 65 --~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
+++.||++..+++.+|++.|+++|++....|..+-+|+.+..+.+||.+-| +++|.++|++||+|++||.+|+++
T Consensus 253 ~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp---l~~Ia~i~~~~g~WlHVDaA~GG~ 329 (539)
T PLN02590 253 EENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP---LVPLGNIAKKYGIWLHVDAAYAGN 329 (539)
T ss_pred cccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCeEEEecchhhh
Confidence 588999865457799999999999987777777888888888999999999 999999999999999999999986
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHH-HHHHHHHhhcc----------------c-
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES-VLAAAKKLTRF----------------C- 204 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~-~~~~~~~~~~~----------------~- 204 (334)
....+. ...+.. ++ ...+-+..++||++. .+..+|.++.+++. +.+.+.....+ +
T Consensus 330 al~~~~---~r~~~~--Gi-e~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~ 402 (539)
T PLN02590 330 ACICPE---YRKFID--GI-ENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQ 402 (539)
T ss_pred hhcChh---hHHHhc--CC-ccCCEEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccC
Confidence 542222 222221 11 222345568999886 66789999887664 33333211100 0
Q ss_pred -CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCc-CCCC-ChhhHHH
Q 019899 205 -SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGL-IPSY-SEKGELE 280 (334)
Q Consensus 205 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~-~~~~-~~~~~~~ 280 (334)
..+. ...++..++.-..+..+.+.++.++.-+.++++.+.+++. +|++..+..-..+.|+..+. .+.. ...--.+
T Consensus 403 i~lsR-r~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~ 481 (539)
T PLN02590 403 ISLSR-RFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRE 481 (539)
T ss_pred CCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHH
Confidence 1111 1123333332222335567888888889999999999887 78877654433333444321 1110 0111235
Q ss_pred HHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHHc
Q 019899 281 LWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 281 ~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.+++.++..+.+.+...- +..++|+++++ +++++++.+++.|.+...++
T Consensus 482 l~~~l~~~G~~~vs~t~~~---g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~ 533 (539)
T PLN02590 482 LLAAVNSTGKIFISHTALS---GKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKF 533 (539)
T ss_pred HHHHHHhCCCEEEEeeEEC---CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6666555433455443321 24589999875 58899999999999887653
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=151.69 Aligned_cols=295 Identities=11% Similarity=0.095 Sum_probs=207.1
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh--ccC--cEEEEEeCCCCCCccccHHH
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF--RTG--VELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~--~~g--~~v~~v~~~~~~~~~~~~~~ 83 (334)
+..+.|+++.-++-+.+|+. |+.+++.+|++|||+|+-.+-.++++...... ..| .+++.++++. +...+|.|+
T Consensus 80 rak~LFga~~anVQPhSGs~-AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~-et~~IDyD~ 157 (413)
T COG0112 80 RAKKLFGAEYANVQPHSGSQ-ANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDP-ETGLIDYDE 157 (413)
T ss_pred HHHHHhCCCccccCCCCchH-HHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEeccccc-ccCccCHHH
Confidence 33455667777888777665 88999999999999999998877776654320 233 4566677653 556899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++...+. +||+|+.-....| ..+| .+++.++|.+-|.++.+|-+|-...-.+..+++-. +
T Consensus 158 ~~k~a~e~-----kPK~ii~G~SaY~--r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~---------~ 218 (413)
T COG0112 158 VEKLAKEV-----KPKLIIAGGSAYS--RPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPL---------P 218 (413)
T ss_pred HHHHHHHh-----CCCEEEECccccc--cccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCC---------C
Confidence 99999986 9997776654444 5667 88888888999999999999854322222222211 2
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc-CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC-SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
-..++.+|.+|++ .|.|.|.|+++++++.+.+.+.-.++ ..+++....++.+....+.++..+.++.+++.++++.+
T Consensus 219 ~AdvVTtTTHKTl--rGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaL 296 (413)
T COG0112 219 HADVVTTTTHKTL--RGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKAL 296 (413)
T ss_pred ccceEeCCcccCC--CCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 3568889999999 77899999996678888887754444 34555555555555554544555688899999999999
Q ss_pred HHHHHhCCCcccC-CCceeEEeeecCC-cCCCCChhhHHHHHHHHHHhcCeEEc----CCCCcCCCCCCeEEEEecC---
Q 019899 243 VAGLKQLGIRCSE-SSAGLYCWADMSG-LIPSYSEKGELELWDKLLNIAKINVT----PGSACHCIEPGWFRCCFTS--- 313 (334)
Q Consensus 243 ~~~l~~~g~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~~~~~~~iRi~~~~--- 313 (334)
.+.|.+.|+++.. ...+..+.+++.. ..+ . ..+..+|.+.||.+. |.-.-++-.++.|||+...
T Consensus 297 Ae~l~~~G~~vvsGgTdnHl~lVDl~~~~~~------G-k~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~Tt 369 (413)
T COG0112 297 AEALKERGFKVVSGGTDNHLVLVDLRSKGLT------G-KKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTT 369 (413)
T ss_pred HHHHHHcCCeEecCCccceEEEEEcccCCCC------H-HHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhh
Confidence 9999999999874 3345556678773 222 2 445555788899875 2222222235779998753
Q ss_pred --CCcccHHHHHHHHHHHHHH
Q 019899 314 --LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 --~~~~~l~~~l~~l~~~~~~ 332 (334)
..++|+++..+.+.++++.
T Consensus 370 rG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 370 RGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred cCCCHHHHHHHHHHHHHHHhc
Confidence 3567888888888888764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=157.99 Aligned_cols=293 Identities=15% Similarity=0.093 Sum_probs=180.7
Q ss_pred CcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC-------------cEEEEEeCCCCCCcccc--
Q 019899 18 SQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG-------------VELIPVHCRSTDNFAFS-- 80 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~~v~~~~~~~~~~~-- 80 (334)
+.+++++++++|+..++.... ....+|+....+|.+.........| ..+..+|.++.. ...+
T Consensus 102 ~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 180 (425)
T PRK07495 102 KKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVE 180 (425)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHH
Confidence 689999999999999887542 3345788888777765322110111 123445543211 1222
Q ss_pred --HHHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 81 --ITALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 81 --~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
++.+++.+++. ....++.+|++...+..+|. ..|.+.++++.++|++||+++|+||+|.++...|..+ .. ..
T Consensus 181 ~~~~~l~~~~~~~-~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~-a~---~~ 255 (425)
T PRK07495 181 QSLAALDKLFKAD-VDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF-AM---EH 255 (425)
T ss_pred HHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce-ee---cc
Confidence 34445555421 11235776665544445784 5788899999999999999999999999876555321 11 11
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.+.+..+.+++|.++ +|+++|++++ ++++.+.+.. ....++.+++.+.++.+.++..+ + ....+++
T Consensus 256 -----~gv~pDi~tlsK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~---~--~~l~~~~ 323 (425)
T PRK07495 256 -----HEVAADLTTMAKGLA-GGFPLAAVTG-RAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIE---E--EDLCERA 323 (425)
T ss_pred -----cCCCCCEEeehhhhc-CCccceEEEE-cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH---h--chHHHHH
Confidence 233445788999998 8999999998 7888877753 33456788888886666654321 1 1233344
Q ss_pred HHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCC-CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEE
Q 019899 236 KKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPS-YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310 (334)
Q Consensus 236 ~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~ 310 (334)
+++.+++.+.|+++ +........|+++|+++...... ........+... +.++|+.+.+... ..+.+|+.
T Consensus 324 ~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~-~~~~Gvl~~~~g~----~~~~~r~~ 398 (425)
T PRK07495 324 NQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLK-ALEKGLILLTCGV----HGNVIRFL 398 (425)
T ss_pred HHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHH-HHHCCeEEeecCC----CCCEEEEe
Confidence 44444444444432 21111112388899988542111 011123345666 4458999865321 13679998
Q ss_pred ecC-CCcccHHHHHHHHHHHHHHc
Q 019899 311 FTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 311 ~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+- ++++++++++++|.+++++.
T Consensus 399 Ppl~it~~~id~~~~~l~~~l~~~ 422 (425)
T PRK07495 399 APITIQDDVFAEALDILEASILEA 422 (425)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHH
Confidence 774 69999999999999999764
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-19 Score=155.54 Aligned_cols=302 Identities=15% Similarity=0.137 Sum_probs=204.2
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh-hhhccCcEEEEEeCC--------CCCCccccHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD-IRFRTGVELIPVHCR--------STDNFAFSITALDQA 87 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~-~~~~~g~~v~~v~~~--------~~~~~~~~~~~l~~~ 87 (334)
.+.++++++++.|+++++..++++||.| +++.|...... +. ..|..++-++.+ .+..+.+|++.++++
T Consensus 86 ~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe-~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~a 162 (450)
T TIGR02618 86 FKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQE-KNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKL 162 (450)
T ss_pred CCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHH-hCCeEEEeeecccccccccCCCCCCCcCHHHHHHH
Confidence 5579999999999998877778999976 77777555554 55 788866666432 234578899999999
Q ss_pred HHHHHHcCCceeEEEEeCCCC-CcccCCCHHHHHHHHHHHHhcCcEEEEecccccc-c-c-----CCCCcchhhhhhhcc
Q 019899 88 FNQARKRGVKVRGILICNPAN-PVGNIIPRETLYELLDFAREKNIHVISDEIYGGS-I-F-----GNEEFVSMAEILEAE 159 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~n-ptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~-~-~-----~~~~~~~~~~~~~~~ 159 (334)
|++.. ..++.++.+++++| ..|.++|.++++++.++|++||++|+.|.+.... . + ++....++.+...+
T Consensus 163 I~~~~--~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e- 239 (450)
T TIGR02618 163 IDEVG--ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKE- 239 (450)
T ss_pred hcccc--CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHH-
Confidence 98521 12455788888877 5589999999999999999999999999997541 1 1 11122334222221
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-------cCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-------CSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
+-...+....|..|..+.+- .|++..+++++.++++..... +..+.....+++..+.+. ++ ....
T Consensus 240 -~~~~aD~~~~S~~Kd~~~~~--GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~--~~---~~y~ 311 (450)
T TIGR02618 240 -MMSYADGCTMSGKKDCLVNI--GGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREA--VD---YEYI 311 (450)
T ss_pred -HhccCcEEEEeeccCCCCCC--ceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHh--hh---HHHH
Confidence 11233346678888887551 366666899999888776322 223334444444444331 11 1222
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeEEc-CCCCc-CCC------
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKINVT-PGSAC-HCI------ 302 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~-~g~~~-~~~------ 302 (334)
++-..+.++|.+.|.+.|+++..|.+|..++++..+... ......+..++.+|..+.||.-. -|+.. +-.
T Consensus 312 ~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~ 391 (450)
T TIGR02618 312 EHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEH 391 (450)
T ss_pred HHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcc
Confidence 333345788999999999999888899889898765322 12345677899999999999533 34431 111
Q ss_pred -C--CCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 303 -E--PGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 303 -~--~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
. -.-+|+.+.. .|.+.++.+.+.+..+.++
T Consensus 392 ~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 392 HRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred cCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 0 1468999985 4999999999999988765
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-19 Score=160.05 Aligned_cols=295 Identities=13% Similarity=0.070 Sum_probs=182.5
Q ss_pred CCCcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhh-hhhccC-------------cEEEEEeCCCCCC--c
Q 019899 16 DPSQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRD-IRFRTG-------------VELIPVHCRSTDN--F 77 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~-~~~~~g-------------~~v~~v~~~~~~~--~ 77 (334)
..+.+++++++++|+..++... .....+|+....+|.+.... +. ..+ ..+..+|.++... .
T Consensus 102 ~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (433)
T PRK08117 102 GLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALS-VTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPK 180 (433)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHh-hcCCCccccccCCCCCCCcEEeCCCccccccc
Confidence 3568999999999999998763 22345677777777654322 21 111 1123333321100 0
Q ss_pred --------cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCC
Q 019899 78 --------AFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEE 148 (334)
Q Consensus 78 --------~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~ 148 (334)
..+++++++.++... ...++.+|++.......|.+. +.+.++++.++|++||+++|+||+|.++...|..
T Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~ 259 (433)
T PRK08117 181 GEDPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEW 259 (433)
T ss_pred cCchhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccc
Confidence 025566666665311 123566555554477778765 6778999999999999999999999987665543
Q ss_pred cchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHH
Q 019899 149 FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
+.. .. .+....+.+++|.++ +|+++|++++ ++++.+.+... ...++.+++.+.++.+.++..+ +
T Consensus 260 ~~~-~~--------~gv~pDi~t~sK~lg-~G~pigav~~-~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~--~- 325 (433)
T PRK08117 260 FAA-QT--------FGVVPDIMTIAKGIA-SGLPLSAVVA-SKELMEQWPLGSHGTTFGGNPVACAAALATLEVIK--E- 325 (433)
T ss_pred hhH-hh--------cCCCCCEeehhhhcc-CCCcceeEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--h-
Confidence 221 11 122223468999999 8999999998 88888777532 3345678888888888876432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
....++++++.+++.+.|+++ ++.......|.++++.+..............+... +.++||.+.+...
T Consensus 326 --~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~g~---- 398 (433)
T PRK08117 326 --EKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDK-CLEKGLLFYLCGN---- 398 (433)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHH-HHHCCCEEeecCC----
Confidence 123344555556666666553 22222233456666777432111111233455666 4558998876321
Q ss_pred CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 ~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+.+|++++. .+++++++++++|.+++++.
T Consensus 399 ~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 399 AGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 24689999753 79999999999999998753
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=157.49 Aligned_cols=280 Identities=11% Similarity=0.007 Sum_probs=187.1
Q ss_pred hhcCCCCCCCCcE--EEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 8 VLGQAVSFDPSQI--VLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 8 ~~~~~~~~~~~~i--~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
.+++.++++++++ ++|+|+|+++..++.+.. .++..|+++.-.|++....++ .+|.+++.+|+ +.++.+|+++
T Consensus 74 ~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~-~lg~~~~~V~~--d~~g~id~~~ 150 (374)
T PLN03032 74 WFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR-MYRMEAVKVPT--LPSGEIDYDD 150 (374)
T ss_pred HHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHH-HcCCCCeEeee--CCCCcCcHHH
Confidence 3444455777777 999999999998887653 244589999999999999998 88988889988 3456899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC-----cEEEEeccccccccCCCCcchhhhhhhc
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN-----IHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~-----~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
|+++|++. ..++.+++++..+|++|.+.| +++|.++|+++| +|+++|.+|+.+..+-....+..
T Consensus 151 L~~~i~~~---~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~----- 219 (374)
T PLN03032 151 LERALAKN---RDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEV----- 219 (374)
T ss_pred HHHHHHHc---CCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCccc-----
Confidence 99999862 124677888888999999999 889999999996 58999999976432100000000
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-------cCCChHH--HHHHHHhhCChHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-------CSISAPT--QRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~l~~~~~~~~~~~ 229 (334)
+...+.+.+..|.||..+ .+..+|.++.++ ...+.+.....+ ...+... ...+...++. +..+.+.
T Consensus 220 -~~~~~vDSis~s~HK~~g-~P~g~G~ll~r~-~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~--~G~~g~~ 294 (374)
T PLN03032 220 -TFRKPIGSVSVSGHKFLG-CPMPCGVALTRK-KHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRR--KGYRGIK 294 (374)
T ss_pred -CCCcCCcEEEECcccccC-CCcCeEEEEEEc-hhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHH--hCHHHHH
Confidence 111234456679999887 456689999854 444544332222 1122222 2222222222 1244567
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEE
Q 019899 230 TNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRC 309 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi 309 (334)
++.++..++++++.+.|++.++++...+....+.+.-|. . .. +. .|-.+.+ ..+++|+
T Consensus 295 ~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~V~f~~~~--~-------~~-----~~-~~w~l~~-------~~~~~hi 352 (374)
T PLN03032 295 RDVQHCMRNAHYLKDRLTEAGLTCRLNELSSTVVFERPM--D-------EA-----FI-KKWQLAC-------EGDIAHV 352 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEECCCceEEEEcCCC--c-------Hh-----Hh-heeeecc-------cCCEEEE
Confidence 788888999999999999988886543333333344332 1 11 12 2443332 1247999
Q ss_pred EecC-CCcccHHHHHHHHHH
Q 019899 310 CFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 310 ~~~~-~~~~~l~~~l~~l~~ 328 (334)
++.. .+.+.++++++.|++
T Consensus 353 ~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 353 VVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EECCCCCHHHHHHHHHHHhc
Confidence 9886 688999999998875
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=150.85 Aligned_cols=279 Identities=17% Similarity=0.217 Sum_probs=183.2
Q ss_pred CCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 16 DPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
...+.+.++++|.|+.+++.++ ..+||.|++|+.+|......+. ..|++++.+++++ +.+.+|.+.++++|++
T Consensus 48 G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~-~~Ga~PVFvDid~-~T~nid~~~ie~aIt~---- 121 (374)
T COG0399 48 GVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVL-LVGAKPVFVDIDP-DTLNIDPDLIEAAITP---- 121 (374)
T ss_pred CCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHH-HcCCeEEEEecCC-cccCCCHHHHHHHccc----
Confidence 3678999999999999999977 5899999999999999999988 9999999999964 6678999999999997
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcEEEEecc-
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRVHIIYGL- 172 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 172 (334)
++|+|+.++- .|...+ +++|.++|++||++||+|.+++... |.|....++ + ++.+.||
T Consensus 122 --~tKAIipVhl---~G~~~d---m~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~-----------G-d~~~fSF~ 181 (374)
T COG0399 122 --RTKAIIPVHL---AGQPCD---MDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSF-----------G-DIGAFSFH 181 (374)
T ss_pred --CCeEEEEehh---ccCCCC---HHHHHHHHHHcCCeEEEEcchhccCeecCcccccc-----------c-ceEEEEec
Confidence 7999998744 466677 9999999999999999999988754 444433232 1 2334455
Q ss_pred -cccCCCCCceEEEEeecCHHHHHHHHHhhcccC--------------CCh-HHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 173 -SKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS--------------ISA-PTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 173 -sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
+|.++ .| -.|.+++.++++.++++.++..+. .|. +.-..++-.+...+.++++. ++=+
T Consensus 182 ~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~----~~R~ 255 (374)
T COG0399 182 ATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEIN----ERRR 255 (374)
T ss_pred CCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 58886 55 679999989999988876543321 111 11111111111222223332 2233
Q ss_pred HHHHHHHHHHHhC-CCcccCCCce----eEE-eeecCCcCCCCChhhHHHHHHHHHHhcCeE----EcCCCCc-------
Q 019899 237 KLYDSFVAGLKQL-GIRCSESSAG----LYC-WADMSGLIPSYSEKGELELWDKLLNIAKIN----VTPGSAC------- 299 (334)
Q Consensus 237 ~~~~~~~~~l~~~-g~~~~~~~~g----~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~~g~~~------- 299 (334)
+..++..+.|+++ ++.......+ +++ .+.+++. ......+... |++.||. ..|....
T Consensus 256 ~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~-----~~~R~~l~~~-L~~~gi~~~~~~~P~~~~~~~~~~~ 329 (374)
T COG0399 256 EIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE-----GISRDALMES-LKEAGVGAVVYFRPLHLQPAYRQLG 329 (374)
T ss_pred HHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC-----CCCHHHHHHH-HHhCCCCceEEeeccccchhhhccc
Confidence 3345555566655 2433322222 222 2344432 1233456666 7767554 4442221
Q ss_pred -CC--C-------CCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 300 -HC--I-------EPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 -~~--~-------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.. . ....+.+-+.. +++++++++++.|++++.+
T Consensus 330 ~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 330 YFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred ccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 00 0 01345555543 6999999999999999865
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=161.63 Aligned_cols=283 Identities=11% Similarity=0.039 Sum_probs=185.3
Q ss_pred hhhhcCCCCCC-CCcEEEec-CcHHHHHHHHHHhcCC-CCeEEecCCCCCChhhh-h-hhccCc-EEEEEeCCCCCCccc
Q 019899 6 SQVLGQAVSFD-PSQIVLTA-GATPAVEILCFCLADH-GNALLVPSPYYPGFDRD-I-RFRTGV-ELIPVHCRSTDNFAF 79 (334)
Q Consensus 6 ~~~~~~~~~~~-~~~i~~~~-g~~~~~~~~~~~l~~~-gd~vl~~~p~~~~~~~~-~-~~~~g~-~v~~v~~~~~~~~~~ 79 (334)
++.+.+.++.+ +++|++++ ++|.+++.++.+++++ ++.|+. +-.|+..... + + ..|. +++.++. +.+..+
T Consensus 54 r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~-~~g~~~v~~~~~--~~g~~~ 129 (378)
T PRK03080 54 IEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSKWATDVVK-QLKLEDPRVLEA--DYGSLP 129 (378)
T ss_pred HHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHh-hcCCCCceEecc--CCCCCC
Confidence 44445556654 35799886 8999999999999874 444444 5566553332 3 3 5788 8888886 345567
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|+++++ .+++|.+++.+|.||..+| +++|++ +++|+++++|.+++. |....++.
T Consensus 130 d~~~i~-----------~~~~V~~~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs~----G~~pidv~------ 183 (378)
T PRK03080 130 DLSAVD-----------FDRDVVFTWNGTTTGVRVP---VARWIG--ADREGLTICDATSAA----FALPLDWS------ 183 (378)
T ss_pred CHhhcC-----------CCCCEEEEecCCccceecc---chhhcc--ccCCCeEEEeccccc----ccCCCCHH------
Confidence 766533 2456899999999999999 777777 789999999999875 33333443
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh----------------------cccCCChHH---HHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT----------------------RFCSISAPT---QRLL 214 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~---~~~~ 214 (334)
+.++++.|.+|+++. ..++|+++. +++..+.+.... ...+.+++. ..++
T Consensus 184 ----~iD~~~~s~~K~l~~-P~G~g~l~v-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l 257 (378)
T PRK03080 184 ----KLDVYTFSWQKVLGG-EGGHGMAIL-SPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDY 257 (378)
T ss_pred ----HCcEEEEehhhhCCC-CCceEEEEE-CHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHH
Confidence 235888999999863 234899998 777766654311 011122233 3333
Q ss_pred HHhhCChHHHHH--HHHHHHHHHHHHHHHHHHHHHhCC-CcccCC----CceeEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 215 ISMLSDTKFIQE--YLETNKRRIKKLYDSFVAGLKQLG-IRCSES----SAGLYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 215 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
.++++ ++.+ .++++.++.+++.+++.+.|++.+ +++..+ ..+..+.+.+|+.. .....++...+++
T Consensus 258 ~~al~---~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~----~~~~~~~~~~l~~ 330 (378)
T PRK03080 258 LDQLD---WANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ----AAVDAAAVAKLLR 330 (378)
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch----HHHHHHHHHHHHH
Confidence 33333 2333 357778888889999999998885 455421 12234445665410 0012356667565
Q ss_pred hcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 288 IAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 288 ~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
+||.+..|.... ..+.+|+|++. .+++|++++++.|++++++.+
T Consensus 331 -~~i~v~~g~~~~--~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 331 -ENGAVDIEPYRD--APNGLRIWCGPTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred -cCCeeccccccC--CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 588887765431 35789999885 699999999999999987653
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-19 Score=161.84 Aligned_cols=288 Identities=15% Similarity=0.130 Sum_probs=179.3
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcE------------EE-----EEeCCCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVE------------LI-----PVHCRSTDN 76 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~------------v~-----~v~~~~~~~ 76 (334)
..+.+++++++++|+..++.... ..+++|+..+++|+++...+....|.. .. .+.+ +
T Consensus 105 ~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 180 (426)
T PRK00062 105 SIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTA--P-- 180 (426)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEc--C--
Confidence 35789999999999999988753 236789999999998753322111100 00 0111 0
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCcEEEEeccccccccCCCCc-chhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIP-RETLYELLDFAREKNIHVISDEIYGGSIFGNEEF-VSMAE 154 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~-~~~~~ 154 (334)
..|++.+++.++.. ..++.+|++......+|.+.+ .+.+++|.++|++||+++|+||+|.++.. +... .....
T Consensus 181 -~~d~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~-g~~~~~~~~~ 255 (426)
T PRK00062 181 -YNDLEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRV-ALGGAQGYYG 255 (426)
T ss_pred -CCCHHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcccc-CCccHHHHhC
Confidence 13788898888642 235666666644666888876 77899999999999999999999987733 3211 11111
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-----cccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-----RFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
. .++ +.+++|.++ .|+++|++++ ++++.+.+.... ..++.+++.+.++.+.++..+. ++..+
T Consensus 256 ~------~pD----i~~~gK~l~-~G~p~ga~~~-~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~ 322 (426)
T PRK00062 256 V------TPD----LTTLGKIIG-GGLPVGAFGG-RREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYE 322 (426)
T ss_pred C------Ccc----hHhhhhHhh-CCCcceeeeE-HHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHH
Confidence 1 122 468999998 8999999988 788888885321 2346788888877777654221 11223
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCc-CCC------CChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGL-IPS------YSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~-~~~------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
+.++.....++.+.+.+++.++.......|.++.+.+... ... ........+...++ ++||.+.|..
T Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv~v~~~~----- 396 (426)
T PRK00062 323 ELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGVYLAPSQ----- 396 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCeEeecCC-----
Confidence 3333333333444444444565542222344444444321 110 01112245677755 5899997743
Q ss_pred CCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 303 EPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 ~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.+++++. +++++++++++.+.++++++
T Consensus 397 -~~~~~~~~~-~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 397 -FEAGFVSAA-HTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred -cCceeeecc-CCHHHHHHHHHHHHHHHHhh
Confidence 124567654 79999999999999998764
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=157.21 Aligned_cols=282 Identities=12% Similarity=0.055 Sum_probs=188.2
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh---------hhccCcEEEEEe--CCCCCCccccHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI---------RFRTGVELIPVH--CRSTDNFAFSITALDQ 86 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~---------~~~~g~~v~~v~--~~~~~~~~~~~~~l~~ 86 (334)
-+|-.- +++.|+.+++.++++|||+|+..+..|+++.... . ..|..+..++ ++ +....+|++++++
T Consensus 216 aNVQp~-SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs-~sG~~~~~vpY~~d-~~~g~IDyd~lek 292 (586)
T PLN02271 216 VNVQPY-SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVS-GASIFFESLPYKVN-PQTGYIDYDKLEE 292 (586)
T ss_pred cceeec-cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccc-cccceEEEEEcccc-cccCccCHHHHHH
Confidence 456666 5666999999999999999999888777665432 2 3454444444 43 2445799999999
Q ss_pred HHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcE
Q 019899 87 AFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRV 166 (334)
Q Consensus 87 ~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (334)
..... ++|+|++....+| ..+| ++++.++|+++|+++++|.+|......+..+.+.. ...+
T Consensus 293 ~a~~~-----rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~---------~~aD 353 (586)
T PLN02271 293 KALDF-----RPKILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPF---------DYCD 353 (586)
T ss_pred Hhhhc-----CCeEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCC---------cCCc
Confidence 55543 8998888777788 6788 88889999999999999999977544332221111 3456
Q ss_pred EEEecccccCCCCCceEEEEeecCH-------------------HHHHHHHHhhcc-cCCCh--HHHHHHHHhhCChHHH
Q 019899 167 HIIYGLSKDLSLPGFRTGVIYSYNE-------------------SVLAAAKKLTRF-CSISA--PTQRLLISMLSDTKFI 224 (334)
Q Consensus 167 ~~~~s~sK~~~~~g~r~g~i~~~~~-------------------~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~~~~ 224 (334)
++.+|.+|++ .|.|.|.|++++. ++.+.+.+...+ +..++ ....+++..++.. .
T Consensus 354 vvt~TTHKtL--rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea--~ 429 (586)
T PLN02271 354 IVTSTTHKSL--RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQV--A 429 (586)
T ss_pred EEEeCCcccC--CCCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHH--h
Confidence 8889999999 4556688887331 233444332222 22222 2334444444321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc---C
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQLGIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC---H 300 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~---~ 300 (334)
...+.++.+++.++++.|.+.|.+.|+++. ....+..+++++..... +. ..+.++|++.||.+.-...+ .
T Consensus 430 ~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~-----~G-~~ae~~Le~~~I~~Nkn~iP~d~~ 503 (586)
T PLN02271 430 TPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGL-----TG-KNYEKVCEMCHITLNKTAIFGDNG 503 (586)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCC-----CH-HHHHHHHHHcCeEeccccCCCCCC
Confidence 223478889999999999999999999976 44456777888865321 12 55566688899987532222 1
Q ss_pred CCCCCeEEEEecC-----CCcccHHHHHHHHHHHHH
Q 019899 301 CIEPGWFRCCFTS-----LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 301 ~~~~~~iRi~~~~-----~~~~~l~~~l~~l~~~~~ 331 (334)
+..++.+||+... ..++|++++.+.+.++++
T Consensus 504 ~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 504 TISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 2235679999653 357888888888777765
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=147.65 Aligned_cols=294 Identities=15% Similarity=0.151 Sum_probs=187.9
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-CCCCeEEecCCCCCChhhh--hhhccCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-DHGNALLVPSPYYPGFDRD--IRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-~~gd~vl~~~p~~~~~~~~--~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
.|..+.++.++ +...+++++|+. ++.++++.+| ++|..|++.+-+|-...+. +..+.|..+.++.- +++.-++
T Consensus 60 rLE~~vA~l~G-KEAgLFv~SGTm-gNllaIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~--e~dgtm~ 135 (384)
T KOG1368|consen 60 RLEQRVAELFG-KEAGLFVPSGTM-GNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKN--ENDGTMD 135 (384)
T ss_pred HHHHHHHHHhC-ccceeeeccccc-ccHHHHHHHhcCCCceEEeccchheeehhccChhhhccceeEeeee--CCCCeee
Confidence 34444554443 333455555555 5656655555 5999999998887654432 22246777777664 5666899
Q ss_pred HHHHHHHHHHHH--HcCCceeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 81 ITALDQAFNQAR--KRGVKVRGILICNPANPVG-NIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 81 ~~~l~~~l~~~~--~~~~~~~~i~~~~p~nptG-~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
+++++++++... -+...+++|.+.|.+|.+| .++|.+++.++.++|++||+.++.|.+-- |.-.-...++...+..
T Consensus 136 ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavasgV~vk~i~~ 214 (384)
T KOG1368|consen 136 LEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVASGVPVKKICS 214 (384)
T ss_pred HHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHcCCCHHHHHH
Confidence 999999998543 2567899999999966555 99999999999999999999999998722 1111112345555554
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
. .+. +--++||.+|.| +|.++..+.+++++.+.++...+ .-.....+++.+....+ .... ...-
T Consensus 215 ~----fDS--VsiCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~----~~~~-L~~d 280 (384)
T KOG1368|consen 215 A----FDS--VSICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE----NVPL-LRAD 280 (384)
T ss_pred h----hhh--hhhhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc----chHH-HHHH
Confidence 1 222 223799999855 78877779999998887654432 22222333333332211 1122 2233
Q ss_pred HHHHHHHHHHHHhCC-CcccCC--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec
Q 019899 236 KKLYDSFVAGLKQLG-IRCSES--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT 312 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~ 312 (334)
.+++..+.+.++..+ +++-.+ +.++. .+.+-.. ..+..++++. ++++||.+.++.. ..+|+.+.
T Consensus 281 Hk~A~~lAe~~~~~~~i~v~v~a~etNiv-~~~l~q~-----~~~~~~l~~~-~~k~gi~lm~~~s------~r~Rivlh 347 (384)
T KOG1368|consen 281 HKRAKELAEYINTPEEIRVEVPAVETNIV-NMVLCQA-----RLTAEELCKF-LEKNGILLMGGAS------RRIRIVLH 347 (384)
T ss_pred HHHHHHHHHHhccccceeeecchhhccee-eeecccc-----cCCHHHHHHH-HHHCCeEEeeccc------cceEEEEE
Confidence 455566666666653 554333 44443 3333221 1345788888 5669999988763 45899998
Q ss_pred C-CCcccHHHHHHHHHHH
Q 019899 313 S-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 313 ~-~~~~~l~~~l~~l~~~ 329 (334)
+ +++++++.++..+++.
T Consensus 348 ~Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 348 HQVTDEDVEYVKSVLSKK 365 (384)
T ss_pred EecCHHHHHHHHHHHHHH
Confidence 6 7999999999999443
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=157.10 Aligned_cols=279 Identities=11% Similarity=0.099 Sum_probs=191.1
Q ss_pred hhhcCCCCC-CCCcEEEecC-cHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCC--CCCcccc
Q 019899 7 QVLGQAVSF-DPSQIVLTAG-ATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRS--TDNFAFS 80 (334)
Q Consensus 7 ~~~~~~~~~-~~~~i~~~~g-~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~--~~~~~~~ 80 (334)
+.+.+.++. +..+|++++| +|.++++++.++..+||++++..-..++ +.+.++ ..|. ++.+...+ +.+..++
T Consensus 44 ~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~-~~g~-~~~~~~~~~~~~~~~~~ 121 (349)
T TIGR01364 44 SDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAK-KYGV-VNVVASGKEGNYTKIPD 121 (349)
T ss_pred HHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHH-HhCC-cEEEeccccCCCCCCCC
Confidence 334444544 3347888877 9999999999999899998877655443 333455 6788 76666432 2344566
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++. + .++++|.+++..|.||+..+ ++++.+++++++|.+.+. +.....+..
T Consensus 122 ~~~~~~--~------~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDavss~----g~~~id~~~------ 175 (349)
T TIGR01364 122 PSTWEI--S------EDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMSSNI----LSRPIDVSK------ 175 (349)
T ss_pred HHhcCC--C------CCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEccccc----cCccCCHHH------
Confidence 666552 2 27899999999999999876 556668999999999875 333444432
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--------------hcccCCChHHHHHHHHhhCChHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--------------TRFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
.+ +++.|.+|.+|++| +|.++. ++++.+++... ..+++++....+++.++++... +.
T Consensus 176 --~d--~~~~ssqK~lgP~G--lg~l~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~--~~ 246 (349)
T TIGR01364 176 --FG--LIYAGAQKNIGPAG--LTVVIV-RKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLK--EQ 246 (349)
T ss_pred --cc--EEEEecccccCCCc--eEEEEE-CHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHH--Hc
Confidence 33 78889999998666 788888 67666554211 1123556666666666664321 33
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhC-CCcccC-C---CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 227 -YLETNKRRIKKLYDSFVAGLKQL-GIRCSE-S---SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~-~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
.++++.++.++..+++.+.|+++ |+.... + ..+..+.+.+++. ....++... +.++|+.+.+|..
T Consensus 247 gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~-~~~~Gi~~~~~~~-- 317 (349)
T TIGR01364 247 GGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE------ELEKRFLKE-AEERGLVSLKGHR-- 317 (349)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh------hHhHHHHHH-HHHCCCcccCCcc--
Confidence 37888999999999999999999 564432 1 2223455565542 112345455 5668997777764
Q ss_pred CCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 301 CIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 301 ~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+.+|+|+.. .+++|++.+++.|++++++|
T Consensus 318 --~~g~vRvS~~~~nt~edid~l~~al~~~~~~~ 349 (349)
T TIGR01364 318 --SVGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349 (349)
T ss_pred --ccCeeEEECcCCCCHHHHHHHHHHHHHHHHhC
Confidence 23589999885 69999999999999998875
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=159.37 Aligned_cols=285 Identities=12% Similarity=0.071 Sum_probs=178.7
Q ss_pred CCCCCCcEEE---ecCcHHHHHHHHHHhcCCCCeEEecCC---CCCC---hhhhhhhccCcEEE----EEeCCCCCCccc
Q 019899 13 VSFDPSQIVL---TAGATPAVEILCFCLADHGNALLVPSP---YYPG---FDRDIRFRTGVELI----PVHCRSTDNFAF 79 (334)
Q Consensus 13 ~~~~~~~i~~---~~g~~~~~~~~~~~l~~~gd~vl~~~p---~~~~---~~~~~~~~~g~~v~----~v~~~~~~~~~~ 79 (334)
++...+.+.+ ..+++.|+..++.+++++||+|+..+. .|.+ .....+ ..+..+. .++.+ .++..+
T Consensus 93 f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~-~s~~~~~~~~~~y~~~-~~~g~i 170 (475)
T PLN03226 93 FRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKK-ISATSIYFESMPYRLD-ESTGLI 170 (475)
T ss_pred hCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccc-cccceEEEEeeeeeec-CCCCCc
Confidence 4445554433 367788999999999999999998553 2222 222222 2222222 33333 245679
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++.+++. ++++|++. .+ .+|+..| +++|.++|+++|+++++|++|.....+.....+. +
T Consensus 171 D~d~Le~~l~~~-----~pklIv~~-~S-~~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p--~---- 234 (475)
T PLN03226 171 DYDKLEKKAMLF-----RPKLIIAG-AS-AYPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASP--F---- 234 (475)
T ss_pred CHHHHHHHHhhc-----CCeEEEEe-cC-cCCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC--C----
Confidence 999999998763 67755553 33 3678888 8888999999999999999998755433221111 1
Q ss_pred ccCCCcEEEEecccccC-CCCCceEEEEeecCHHHH-----------HH---HHHhhc-cc--CCChHHHHHHHHhhCCh
Q 019899 160 EVDKDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVL-----------AA---AKKLTR-FC--SISAPTQRLLISMLSDT 221 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~-----------~~---~~~~~~-~~--~~~~~~~~~~~~~l~~~ 221 (334)
...+++++|++|++ |.. .|++++ +++++ +. +..... .+ +.+.....++..+++..
T Consensus 235 ---~~~Div~~t~hK~L~GP~---Gg~I~~-~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i 307 (475)
T PLN03226 235 ---EYCDVVTTTTHKSLRGPR---GGMIFF-RKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA 307 (475)
T ss_pred ---CCCeEEEecCcccccCCC---ceEEEE-chhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH
Confidence 34568899999999 433 488887 55433 22 111111 12 22333333344444321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CceeEEeeecCC-cCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 222 KFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSES-SAGLYCWADMSG-LIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
......++++++.++.+++.+.|.+.|+++..+ .....+++++.. .++ +.++... |++.||.+..+...
T Consensus 308 --~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~------~~~~~~~-L~~~~I~~nk~~~p 378 (475)
T PLN03226 308 --MTPEFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLT------GSRVEKV-LDLAHITLNKNAVP 378 (475)
T ss_pred --hCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCC------HHHHHHH-HHHCCCEECCCCCC
Confidence 112235678899999999999999999998753 224556677743 222 2345555 77799998765422
Q ss_pred C---CCCCCeEEEEecC-----CCcccHHHHHHHHHHHHH
Q 019899 300 H---CIEPGWFRCCFTS-----LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 300 ~---~~~~~~iRi~~~~-----~~~~~l~~~l~~l~~~~~ 331 (334)
+ +-.+..+|++... .+++|++++.+.|.++++
T Consensus 379 ~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 379 GDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred CCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 1 1234668986431 578899999999998886
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-18 Score=150.13 Aligned_cols=273 Identities=17% Similarity=0.172 Sum_probs=185.0
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
..++.+.++++..|+..++.+++++||+|+++...|++..+.+.. ..|.++.+++. .+.+++++++.+
T Consensus 77 g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~-------~~~~~~~~~~~~-- 147 (396)
T COG0626 77 GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP-------GDDEALEAAIKE-- 147 (396)
T ss_pred CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECC-------CChHHHHHHhcc--
Confidence 467899999999999999999999999999999999998776552 36888887773 244566666653
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
.++++|++.+|+||+..+.| +++|.++|+++|+.+++|+.|..- ....++. .+.+++++|.
T Consensus 148 ---~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP-------~~q~PL~------~GaDIVvhSa 208 (396)
T COG0626 148 ---PNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATP-------VLQRPLE------LGADIVVHSA 208 (396)
T ss_pred ---cCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccc-------cccChhh------cCCCEEEEec
Confidence 27999999999999999999 999999999999999999998742 2222221 6788999999
Q ss_pred cccCCCC-CceEEEEeecCHHHHHHHHHhhc--cc-CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019899 173 SKDLSLP-GFRTGVIYSYNESVLAAAKKLTR--FC-SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248 (334)
Q Consensus 173 sK~~~~~-g~r~g~i~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (334)
+|.++.. .+=.|.++++++.+.+.+..... .+ ..++...+.+.+-++.. .-+.++..+++..+.+.|++
T Consensus 209 TKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL-------~~Rm~~~~~nA~~IA~~L~~ 281 (396)
T COG0626 209 TKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTL-------ALRMERHNENALKIAEFLAD 281 (396)
T ss_pred cccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHHhc
Confidence 9999533 45556666667777776643322 22 33444444444444442 33455667778888888877
Q ss_pred C-CCc-ccCC----------------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC---------
Q 019899 249 L-GIR-CSES----------------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC--------- 301 (334)
Q Consensus 249 ~-g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--------- 301 (334)
+ .++ +.-| ..|-.+.+++... +....+.+. ++-..+...-|.....
T Consensus 282 ~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~------~~~~~f~~~-L~l~~~a~SlGgveSLi~~pa~~th 354 (396)
T COG0626 282 HPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE------EAAKKFLDS-LKLFKLAESLGGVESLISHPATMTH 354 (396)
T ss_pred CCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh------HHHHHHHHh-CCccEEeccCCCcccccccccccCc
Confidence 5 222 1111 1233344666542 122334444 3333333333332110
Q ss_pred ------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 302 ------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 302 ------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++-+|+|++ -|+++.+++.|.+++++.
T Consensus 355 ~~~~~~~r~~~Gi~~~LvRlSVG---lEd~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 355 ASIPLEERAKAGITDGLVRLSVG---LEDVEDLIADLEQALAKA 395 (396)
T ss_pred ccCCHhHHHhcCCCCCeEEEEec---CCCHHHHHHHHHHHHHhh
Confidence 02357999999 888899999999998764
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-18 Score=151.52 Aligned_cols=302 Identities=14% Similarity=0.127 Sum_probs=202.9
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh-hhhccCcEEEEEeC--------CCCCCccccHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD-IRFRTGVELIPVHC--------RSTDNFAFSITALDQA 87 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~-~~~~~g~~v~~v~~--------~~~~~~~~~~~~l~~~ 87 (334)
.+.++.++++|.|+++++...+++||.| +...|...... +. ..|..++-+.. ..+..+.+|++.++++
T Consensus 93 ~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~-~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~ 169 (460)
T PRK13237 93 FKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQE-LNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQAL 169 (460)
T ss_pred CCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHH-hCCcEEEeeecccccccccCCCCCCCcCHHHHHHH
Confidence 4569999999999999877778999964 55545544444 55 67775444421 1235678999999999
Q ss_pred HHHHHHcCCceeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-c------CCCCcchhhhhhhcc
Q 019899 88 FNQARKRGVKVRGILICNPANPV-GNIIPRETLYELLDFAREKNIHVISDEIYGGSI-F------GNEEFVSMAEILEAE 159 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~------~~~~~~~~~~~~~~~ 159 (334)
|++.. ..++.++.+++++|.. |+.+|.++++++.++|++||+.||+|.+..... + .+....++.+...+
T Consensus 170 I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e- 246 (460)
T PRK13237 170 IDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHE- 246 (460)
T ss_pred hcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhh-
Confidence 98531 1245567777788877 799999999999999999999999999975421 0 11111232222111
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc-------ccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR-------FCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
+-.-.+..+.|++|.++.+ . .|+++++++++.++++...- +++.+..-..+++..+.+.-. .+++.
T Consensus 247 -~~s~aD~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~-~~y~~--- 319 (460)
T PRK13237 247 -MFSYADGCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQ-YEYIE--- 319 (460)
T ss_pred -ccCcCcEEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhch-HHHHH---
Confidence 1123345566899999754 2 48888889999999887632 223334445555554443211 23333
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeEEc-CCCC-cCCC----C-
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKINVT-PGSA-CHCI----E- 303 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~-~g~~-~~~~----~- 303 (334)
.--.+.++|.+.|.+.|+++..|.+|.-++++..+... ......+..++.+|..+.||.-. -|+. ++-. .
T Consensus 320 -~ri~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~ 398 (460)
T PRK13237 320 -HRVGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGEN 398 (460)
T ss_pred -HHHHHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCcc
Confidence 33345689999999999999999999999887654322 12345677899999999999643 2332 1111 1
Q ss_pred ----CCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 304 ----PGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 304 ----~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
-.-+|+.+.. .|.+.++.+.+.+..+.++
T Consensus 399 ~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 399 HYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred CCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 1468999985 5999999999999988765
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=157.09 Aligned_cols=167 Identities=14% Similarity=0.220 Sum_probs=126.6
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh---------cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCC
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL---------ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD 75 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l---------~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~ 75 (334)
+++.++..++. +++++++|+++++..++.++ +++||+|+++.++|..+...+. ..|.+++.++++. .
T Consensus 68 fe~~lA~~~g~--~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~-~~G~~pv~vdvd~-~ 143 (438)
T PRK15407 68 FEKKLAEFLGV--RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII-QNGLVPVFVDVEL-P 143 (438)
T ss_pred HHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH-HcCCEEEEEecCC-C
Confidence 44455554443 47999999999999998876 3789999999999999999888 8999999999853 4
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAE 154 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~ 154 (334)
.+.+|++.+++++++ ++++|+++++ +|...+ +++|.++|+++|++||+|++|+... +.+....+
T Consensus 144 ~~~id~~~le~~i~~------~tkaVi~~~~---~G~p~d---l~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~--- 208 (438)
T PRK15407 144 TYNIDASLLEAAVSP------KTKAIMIAHT---LGNPFD---LAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGT--- 208 (438)
T ss_pred cCCcCHHHHHHHcCc------CCeEEEEeCC---CCChhh---HHHHHHHHHHCCCEEEEECccchhhhcCCeeeec---
Confidence 678999999999876 7898988864 555555 8999999999999999999998643 32221111
Q ss_pred hhhccccCCCcEEEEeccc--ccCCCCCceEEEEeecCHHHHHHHHHhh
Q 019899 155 ILEAEEVDKDRVHIIYGLS--KDLSLPGFRTGVIYSYNESVLAAAKKLT 201 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~s--K~~~~~g~r~g~i~~~~~~~~~~~~~~~ 201 (334)
.+ ++.+.||+ |.+. .|- .|+++++++++.+.++.+.
T Consensus 209 --------~g-d~~~fSf~~~k~~~-~ge-GG~l~t~d~~l~~~~~~~~ 246 (438)
T PRK15407 209 --------FG-DIATLSFYPAHHIT-MGE-GGAVFTNDPLLKKIIESFR 246 (438)
T ss_pred --------cC-ceEEEeCCCCCCcc-ccC-ceEEEECCHHHHHHHHHHH
Confidence 22 24455654 6664 343 5999998888888776554
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-18 Score=153.71 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=116.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.++...+. +..++++++++|+.+++.++.++||+|+++...|.+... .+. ..|.+++.++. . .|
T Consensus 74 le~~la~l~g~--~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~-~~Gi~v~~vd~--~----~d 144 (437)
T PRK05613 74 LENRIASLEGG--VHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLN-RLGIEVTFVEN--P----DD 144 (437)
T ss_pred HHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHH-hcCeEEEEECC--C----CC
Confidence 44555544443 456666666688888888889999999999999998753 334 67999999872 1 27
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++.++.||+|.+.| +++|.++|+++|+++++|.+++... ...++ .
T Consensus 145 ~e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~----~~~p~----~--- 204 (437)
T PRK05613 145 PESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAA----LVRPL----E--- 204 (437)
T ss_pred HHHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCcccc----ccChH----H---
Confidence 8999999986 7899999999999999999 9999999999999999999976411 11111 1
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEee
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYS 188 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~ 188 (334)
.+.++++.|++|.++..|..+|.+++
T Consensus 205 --~GaDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 205 --LGADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred --hCCCEEEeeccceecCCCcceeEEEE
Confidence 56789999999999766655555444
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-18 Score=156.10 Aligned_cols=288 Identities=15% Similarity=0.102 Sum_probs=181.2
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRSTD 75 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~~ 75 (334)
..+.+++++++++|+..++.... ....+|+....+|.+......-..+. .+..++.+..+
T Consensus 101 ~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d 180 (423)
T PRK05964 101 GLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDG 180 (423)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcch
Confidence 35689999999999999887642 12457888888887754332201111 12334432211
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeC-CCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICN-PANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
....+++.+++.+++. ..++.+|++.. .++..|... |.+.++++.++|++||+++|+||++.++...|..+..
T Consensus 181 ~~~~~~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~-- 255 (423)
T PRK05964 181 YEQATLDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFAC-- 255 (423)
T ss_pred hHHHHHHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHH--
Confidence 1122377777777532 23566666654 367778766 8889999999999999999999999876554432211
Q ss_pred hhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh--------hcccCCChHHHHHHHHhhCChHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL--------TRFCSISAPTQRLLISMLSDTKFI 224 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~ 224 (334)
+. .+....+.+++|+++ .| +++|++++ ++++.+.+... ...++.+++...++.+.++..+
T Consensus 256 ~~-------~~v~pDi~~~~K~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~-- 324 (423)
T PRK05964 256 EQ-------AGVSPDIMCLSKGLT-GGYLPLAATLC-TAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFE-- 324 (423)
T ss_pred Hh-------cCCCCCeeeeehhhh-cCcccceEEEE-cHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHH--
Confidence 11 111122347889997 55 89999998 88998887531 2234567777777777665322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC--CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE--SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
+ ....+++.++.+++.+.|++. ...... ..-|.++.+.+..... ......+...|+ ++||.+.+..
T Consensus 325 ~---~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~---~~~~~~l~~~l~-~~Gv~v~~~~---- 393 (423)
T PRK05964 325 D---EPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVL---ERDGPALRAFAL-ERGVLLRPLG---- 393 (423)
T ss_pred h---cCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcc---hhHHHHHHHHHH-HCCeEEEecC----
Confidence 1 123445555566666666554 222211 1235555566653211 012346777744 5899987631
Q ss_pred CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 302 IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 302 ~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.+|++.+. .+++|++++++++.++++++
T Consensus 394 ---~~lR~~p~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 394 ---NTIYLMPPYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred ---CEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence 469999875 69999999999999998763
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.8e-18 Score=137.88 Aligned_cols=281 Identities=17% Similarity=0.142 Sum_probs=205.8
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
-.++..+++.++.+++-.++.|||+|++-...-++ ..+..+ ++|++|..|+. +.+...++|++.+.+..+
T Consensus 70 tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~-r~ga~V~~v~~--~~G~~~~le~i~~~lsqh----- 141 (385)
T KOG2862|consen 70 TFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCAR-RYGAEVDVVEA--DIGQAVPLEEITEKLSQH----- 141 (385)
T ss_pred eEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHH-hhCceeeEEec--CcccCccHHHHHHHHHhc-----
Confidence 35556667899999999999999999887654333 344566 89999999976 678899999999999986
Q ss_pred ceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccC
Q 019899 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDL 176 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~ 176 (334)
+++++++++..+.||++.| -+....++|++|+.+++||.+.+. ++.++ .++. ++.++..+..-|++
T Consensus 142 ~p~~vfv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaSl---ggt~F----~mDe-----wgVDvaytgSQKaL 207 (385)
T KOG2862|consen 142 KPKAVFVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVASL---GGTEF----EMDE-----WGVDVAYTGSQKAL 207 (385)
T ss_pred CCceEEEEecCccccccch--HHHHHHHHhhcCCeEEEEechhhc---CCccc----eehh-----hcccEEEecchhhc
Confidence 9999999999999999977 244556788999999999999764 22221 2222 77777777777999
Q ss_pred CCCCceEEEEeecCHHHHHHHHHhhc--------------c-----------cCCChHHHHHHHHhhCChHHHHHHHHHH
Q 019899 177 SLPGFRTGVIYSYNESVLAAAKKLTR--------------F-----------CSISAPTQRLLISMLSDTKFIQEYLETN 231 (334)
Q Consensus 177 ~~~g~r~g~i~~~~~~~~~~~~~~~~--------------~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (334)
+.| ..++.+.. ++...++++..++ + .+.+....+.+.++|.. ..++-+++.
T Consensus 208 ~aP-~GLsiisf-S~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~--I~eeGL~~~ 283 (385)
T KOG2862|consen 208 GAP-AGLSIISF-SDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALAL--IAEEGLENS 283 (385)
T ss_pred CCC-CCcceeec-CHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHH--HHHHHHHHH
Confidence 744 23555665 6666666654322 1 12344555666666654 346778889
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccC----CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 232 KRRIKKLYDSFVAGLKQLGIRCSE----SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
.++++++.++++..|+..|++... ....-...+.+|...+ -.+++.++...+++.+..|. +...+.++
T Consensus 284 ~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvD------w~dVv~~~~~~~~vei~ggl--g~~~gKv~ 355 (385)
T KOG2862|consen 284 WRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVD------WKDVVAYAMSHYVVEIGGGL--GPTVGKVF 355 (385)
T ss_pred HHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCC------HHHHHHHHHHhcCEEecccc--CCCcccEE
Confidence 999999999999999999887542 1223334566776554 37889998887788886544 33456799
Q ss_pred EEEec-C-CCcccHHHHHHHHHHHHHHc
Q 019899 308 RCCFT-S-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 308 Ri~~~-~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
||++. . -+.+.++..++.|+..+.+.
T Consensus 356 RIGl~gcna~~e~i~~v~~ll~~alq~~ 383 (385)
T KOG2862|consen 356 RIGLLGCNANVEYIDNVVELLKLALQRK 383 (385)
T ss_pred EEEEeeccCCcHHHHHHHHHHHHHHhhc
Confidence 99965 3 48899999999999988764
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-18 Score=149.91 Aligned_cols=296 Identities=13% Similarity=0.102 Sum_probs=196.7
Q ss_pred CCCcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChh-hhhhhccC-------------cEEEEEeCCCCCC--c
Q 019899 16 DPSQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFD-RDIRFRTG-------------VELIPVHCRSTDN--F 77 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~-~~~~~~~g-------------~~v~~v~~~~~~~--~ 77 (334)
....+++++++++|+..++... ...+..|+....+|.+.. ..+. +.| ..++.+|.++... +
T Consensus 116 ~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~gals-lT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~ 194 (447)
T COG0160 116 GLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALS-LTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPF 194 (447)
T ss_pred cCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHH-hccCccccccCCCCCCCCeEEecCCccccCcc
Confidence 4567999999999999998765 233456777777776532 2232 211 2356666532211 1
Q ss_pred --------cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEEEeccccccccCCCC
Q 019899 78 --------AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVISDEIYGGSIFGNEE 148 (334)
Q Consensus 78 --------~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~ 148 (334)
.-..+.+++.+.+......++.++++..-+...|.+.+.+ -++++.++|++||+++|+||++.++..+|+-
T Consensus 195 ~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~ 274 (447)
T COG0160 195 GIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKM 274 (447)
T ss_pred cCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccc
Confidence 1234455665665555555677777776688999977655 5999999999999999999999998877632
Q ss_pred cchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH-HhhcccCCChHHHHHHHHhhCChHHHHHH
Q 019899 149 FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK-KLTRFCSISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
..+.. .+..--+-+++|.+| .|+++|.++. ++++.+... .+..+|+.|+.+..++.+.++..+ ++
T Consensus 275 -fa~E~--------~gv~PDivt~aK~ig-~G~Pl~avv~-r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie--~e- 340 (447)
T COG0160 275 -FAFEH--------FGVEPDIVTLAKSLG-GGLPLSAVVG-RAEIMDWPPGGHGGTFGGNPVACAAALAVLDVIE--EE- 340 (447)
T ss_pred -hhhhh--------cCCCCCEEEeccccc-CCCceeEEec-cHHhcccCCcccCCCCCcCHHHHHHHHHHHHHHH--Hc-
Confidence 22222 222333457899998 6999999998 888877222 345568899999988888886433 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCcccCC--CceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQL--GIRCSES--SAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~--~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
.+.++..+.-+++.+.|+++ ..++... .-|.++.+++-+.... ...+....+..++++ +|+.+..+..+
T Consensus 341 --~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~-~Glil~~~G~~-- 415 (447)
T COG0160 341 --NLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFE-RGLLLLTCGPH-- 415 (447)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHH-cCCEEeccCCC--
Confidence 34455555556666666554 2223322 2367777777654221 222344567777555 89988765533
Q ss_pred CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 302 IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 302 ~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.+||...- +++++++.++++|.+++++.
T Consensus 416 --~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 416 --GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred --CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 5789999774 69999999999999998764
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-18 Score=138.49 Aligned_cols=277 Identities=18% Similarity=0.273 Sum_probs=204.5
Q ss_pred CcHHHHHHHHH---HhcCCCCeEEecCCCCCChhhhhhhccC-cEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeE
Q 019899 25 GATPAVEILCF---CLADHGNALLVPSPYYPGFDRDIRFRTG-VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRG 100 (334)
Q Consensus 25 g~~~~~~~~~~---~l~~~gd~vl~~~p~~~~~~~~~~~~~g-~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 100 (334)
++|.|+.+... .+++ ...|.+.+|+|.++...++ ..| .++..++.-+.+...+|++.+...|+.+ +...
T Consensus 107 sGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if~-~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~A-----Pe~s 179 (410)
T KOG1412|consen 107 SGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIFE-KAGFTTVATYPYWDAENKCVDLEGFLSDLESA-----PEGS 179 (410)
T ss_pred cccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHHH-HcCCceeeeeeeecCCCceecHHHHHHHHhhC-----CCCc
Confidence 45666655533 3444 4479999999999999999 888 5677777655566688999999988874 4454
Q ss_pred EEEeC-C-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC--CcchhhhhhhccccCCCcEEEEecccccC
Q 019899 101 ILICN-P-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE--EFVSMAEILEAEEVDKDRVHIIYGLSKDL 176 (334)
Q Consensus 101 i~~~~-p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~sK~~ 176 (334)
|++.+ + +||||+-.+.+++.+|+++.++.+...+.|-+|++|.-+.. ...-+..+..+ ....+++-||+|-+
T Consensus 180 i~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~----g~e~fv~QSFaKNf 255 (410)
T KOG1412|consen 180 IIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQ----GFELFVCQSFAKNF 255 (410)
T ss_pred EEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhc----CCeEEEEhhhhhhc
Confidence 44444 4 89999999999999999999999999999999999875422 22233344432 34478899999999
Q ss_pred CCCCceEEEE--eecCHHHHHHHHHh------hcccCCChHHHHHHHHhhCChHHHHHH---HHHHHHHHHHHHHHHHHH
Q 019899 177 SLPGFRTGVI--YSYNESVLAAAKKL------TRFCSISAPTQRLLISMLSDTKFIQEY---LETNKRRIKKLYDSFVAG 245 (334)
Q Consensus 177 ~~~g~r~g~i--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 245 (334)
|+.+-|+|.+ +..++..+..+... ....+++..........|...+..++| +..+..++++++..++..
T Consensus 256 GlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~ 335 (410)
T KOG1412|consen 256 GLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDH 335 (410)
T ss_pred ccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 33566665555432 233456667778899999987766666 466778888899999998
Q ss_pred HHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHH
Q 019899 246 LKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPL 321 (334)
Q Consensus 246 l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~ 321 (334)
|..++ |.-....-|||.+-.+. ..-++.|.+++.|++.+.. |++++.++...++.
T Consensus 336 L~aL~TPGtWDHI~~QiGMFSyTGLt-----------p~qV~~li~~h~vyLl~~G----------RInisGLN~~Nvey 394 (410)
T KOG1412|consen 336 LVALKTPGTWDHITQQIGMFSYTGLT-----------PAQVDHLIENHKVYLLSDG----------RINISGLNMKNVEY 394 (410)
T ss_pred HHhcCCCCcHHHHHhhccceeecCCC-----------HHHHHHHHHhceEEEecCC----------cEeeeccccccHHH
Confidence 88763 33334556777654433 2567777888999987532 89988889999999
Q ss_pred HHHHHHHHHHHc
Q 019899 322 VIERIQKVAETC 333 (334)
Q Consensus 322 ~l~~l~~~~~~~ 333 (334)
+.+++-+.++..
T Consensus 395 VAkAIde~Vr~~ 406 (410)
T KOG1412|consen 395 VAKAIDETVRAI 406 (410)
T ss_pred HHHHHHHHHHhh
Confidence 999998887653
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-18 Score=147.63 Aligned_cols=288 Identities=15% Similarity=0.137 Sum_probs=192.1
Q ss_pred CCCcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhccC-------------------cEEEEEeCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRTG-------------------VELIPVHCRST 74 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g-------------------~~v~~v~~~~~ 74 (334)
..|.|-++|++|+|...+++.. ....|+|+..+-||.+..+.+....| ..+..+|.
T Consensus 108 ~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y--- 184 (432)
T COG0001 108 SIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY--- 184 (432)
T ss_pred cccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC---
Confidence 3489999999999999998875 34678999999999988776542222 11223332
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHH-HHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET-LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~-l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
.|++.+++++++. +..+.+|++.-.....|.+.|.++ ++.|.++|+++|+++|.||+...|...-.+.+...
T Consensus 185 ----ND~~al~~~~~~~---g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~ 257 (432)
T COG0001 185 ----NDLEALEEAFEEY---GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYY 257 (432)
T ss_pred ----CCHHHHHHHHHHc---CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCccccccc
Confidence 3899999999874 335665555544555688777665 99999999999999999999988776433444554
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-----cccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-----RFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
.+.+ -+.+++|.+| .|+++|.+.+ +.++++.+.... ..++.|++++.+....++.....+...
T Consensus 258 gi~P----------DlttlGKiIG-GGlP~ga~gG-r~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y 325 (432)
T COG0001 258 GVEP----------DLTTLGKIIG-GGLPIGAFGG-RAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVY 325 (432)
T ss_pred CcCc----------chhhhhhhhc-CCcceeeecc-HHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHH
Confidence 4433 4678999998 9999999998 889999876543 335678888888777775432101123
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccC-CCceeEEeeecCCcCCCC------ChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLGIRCSE-SSAGLYCWADMSGLIPSY------SEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
.++.+.-.+.++-+.+.+++.++++.. ..++++..+-.+.....+ ..+....+...|++ +||++.|+.+
T Consensus 326 ~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~-~GV~l~ps~~--- 401 (432)
T COG0001 326 ERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLN-RGVYLAPSQF--- 401 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHh-CCcccCCccc---
Confidence 333344444444555555556777653 334444322222111111 11123445666565 7999998763
Q ss_pred CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 302 IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 302 ~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
...-+|.. .++++|++.++++.+++++.
T Consensus 402 ---ea~flS~a-hte~di~~~~~a~~~~~~~~ 429 (432)
T COG0001 402 ---EAGFLSTA-HTEEDIDRTLEAADEAFKEL 429 (432)
T ss_pred ---cceeeecc-cCHHHHHHHHHHHHHHHHHh
Confidence 12236666 89999999999999988764
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-17 Score=151.51 Aligned_cols=293 Identities=14% Similarity=0.090 Sum_probs=178.6
Q ss_pred CcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhccC-------------cEEEEEeCCCCCC----cc
Q 019899 18 SQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRTG-------------VELIPVHCRSTDN----FA 78 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~~v~~~~~~~----~~ 78 (334)
+.+++++++++|+..++... ....++|+...++|.+......-..+ ..+..+|.....+ ..
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLA 197 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccc
Confidence 57999999999999998743 22447899999998877543220111 1122233211111 01
Q ss_pred ccH-HHHHHHHHHHHH--cCCceeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 79 FSI-TALDQAFNQARK--RGVKVRGILICNP-ANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 79 ~~~-~~l~~~l~~~~~--~~~~~~~i~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
.+. +.+++.++.... ...++.+|+ ..| +...|.+. +.+.++++.++|++||+++|.||++.+|...|..+..
T Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~-- 274 (443)
T PRK06058 198 TDGEEAAARAITVIEKQVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFAC-- 274 (443)
T ss_pred cchHHHHHHHHHHHHHhhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHH--
Confidence 111 222222222111 123566555 556 44556654 5778999999999999999999999987655543211
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETN 231 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (334)
+.. +..+| +.+++|.++ .|+++|++++ ++++.+.+.. +...++.|++++.++.+.++..+ + ...
T Consensus 275 ~~~---gv~PD----iv~~gK~l~-~G~Pi~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~--~---~~l 340 (443)
T PRK06058 275 EHE---GIVPD----LITTAKGIA-GGLPLSAVTG-RAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIE--E---DDL 340 (443)
T ss_pred Hhc---CCCCC----EEEEccccc-CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH--H---cCH
Confidence 111 12122 235689998 8999999998 8888887753 33556789999988888875432 1 234
Q ss_pred HHHHHHHHHHHHHHHHhC----CCcc-cCCCceeEEeeecCCcC-CCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCC
Q 019899 232 KRRIKKLYDSFVAGLKQL----GIRC-SESSAGLYCWADMSGLI-PSYSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305 (334)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~----g~~~-~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~ 305 (334)
.++++++.+++.+.|+++ ++.. +.+. |.++.+.+.... .....+....+...++ ++||.+.|+..+ .+
T Consensus 341 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~~----~~ 414 (443)
T PRK06058 341 VARARQIEALMTDRLRALAAEDDRIGDVRGR-GAMIAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGTY----GN 414 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeeecc-ceEEEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCCC----CC
Confidence 455556666777777653 2211 2344 444445553221 1111122334556644 589999886544 35
Q ss_pred eEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 306 WFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 306 ~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++|+..+. ++++++++++++|.++++++
T Consensus 415 ~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~ 443 (443)
T PRK06058 415 VIRLLPPLVIGDELLREGLDVLEAALADL 443 (443)
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence 89998664 69999999999999998763
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=154.45 Aligned_cols=271 Identities=19% Similarity=0.236 Sum_probs=172.8
Q ss_pred CCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 17 PSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
..+++.++++|.|+.+++.++ .++||+|++|..+|.+....+. ..|++++.+++++ +.+.+|++.+++++++
T Consensus 40 ~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~-~~G~~pv~~Di~~-~~~~id~~~~~~~i~~----- 112 (363)
T PF01041_consen 40 VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAIL-WAGAEPVFVDIDP-ETLNIDPEALEKAITP----- 112 (363)
T ss_dssp SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHH-HTT-EEEEE-BET-TTSSB-HHHHHHHHHT-----
T ss_pred CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHH-HhccEEEEEeccC-CcCCcCHHHHHHHhcc-----
Confidence 678999999999999999998 5899999999999999999998 9999999999963 6789999999999997
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcEEEEecc--
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRVHIIYGL-- 172 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-- 172 (334)
++++|+++ +..|...+ +.+|.++|+++|++||+|.+++.+. +.|....+ .+ ++.+.||
T Consensus 113 -~t~ai~~~---h~~G~~~d---~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~-----------~g-d~~~fSf~~ 173 (363)
T PF01041_consen 113 -KTKAILVV---HLFGNPAD---MDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGS-----------FG-DIAIFSFHP 173 (363)
T ss_dssp -TEEEEEEE----GGGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTS-----------SS-SEEEEESST
T ss_pred -CccEEEEe---cCCCCccc---HHHHHHHHHHcCCcEEEccccccCceeCCEeccC-----------CC-CceEecCCC
Confidence 88999988 45566666 9999999999999999999998743 22211111 22 3555666
Q ss_pred cccCCCCCceEEEEeecCHHHHHHHHHhhccc-------------------CCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 173 SKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC-------------------SISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
+|.++ .| ..|+++++++++.++++.++..+ ..+.+ ++++... . .+.+.+..+
T Consensus 174 ~K~i~-~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~-~AAigl~--Q----L~~L~~~~~ 244 (363)
T PF01041_consen 174 TKIIT-TG-EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSEL-QAAIGLA--Q----LKRLDEIIA 244 (363)
T ss_dssp TSSS--SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHH-HHHHHHH--H----HHTHHHHHH
T ss_pred CCCCc-CC-CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHH-HHHHHHH--H----HHHhhhhHH
Confidence 58884 33 35889988999999888754322 11111 1111111 1 112344444
Q ss_pred HHHHHHHHHHHHHHhC-CCccc--CCCc---ee-EEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC--cCCC--
Q 019899 234 RIKKLYDSFVAGLKQL-GIRCS--ESSA---GL-YCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA--CHCI-- 302 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~-g~~~~--~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~--~~~~-- 302 (334)
+-+++.+.+.+.|.+. ++... .+.. .+ .+.+.++.... .+..++.+. |++.||.+.+... .+..
T Consensus 245 ~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~----~~rd~l~~~-L~~~GI~~~~~~~~pl~~~~~ 319 (363)
T PF01041_consen 245 RRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL----ADRDELVEA-LRARGIETRPHYPKPLHRQPV 319 (363)
T ss_dssp HHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----STHHHHHHH-HHHTTBEEBCSTSSCGGGSGG
T ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc----chHHHHHHH-HHHCCCcccccccCchhhhHH
Confidence 4556677788888776 34222 1221 11 12234443211 234677778 6668999886542 1100
Q ss_pred --------C----------CCeEEEEecC-CCcccHHHHHHHHH
Q 019899 303 --------E----------PGWFRCCFTS-LTHEDIPLVIERIQ 327 (334)
Q Consensus 303 --------~----------~~~iRi~~~~-~~~~~l~~~l~~l~ 327 (334)
. ...+-+.+.. .+++++++.++.|+
T Consensus 320 ~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 320 YRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp GTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 0 0135555554 68999999888875
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-18 Score=148.81 Aligned_cols=270 Identities=17% Similarity=0.144 Sum_probs=166.6
Q ss_pred CcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---h------ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 25 GATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---F------RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 25 g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~------~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
+++.|+.+++.+|+++||+|+..++.++++...-. . ....+++.+++++ +...+|.+++++.++..
T Consensus 94 SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~-~~~~ID~d~l~~~a~~~---- 168 (399)
T PF00464_consen 94 SGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDP-DTGLIDYDELEKLAKEH---- 168 (399)
T ss_dssp SHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-T-TTSSB-HHHHHHHHHHH----
T ss_pred CchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeec-CCCeECHHHHHHHHhhc----
Confidence 56779999999999999999999887766543211 0 1235788888864 56799999999999987
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc-ccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS-IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
+|++|++....+| ..+| .+++.++|++.|.++++|-+|... .-+| .+++-. ...+++.+|.+|
T Consensus 169 -kPklIi~G~S~y~--~~~d---~~~~reIad~vga~l~~D~sH~~GLIa~g-~~~~P~---------~~ADvvt~sThK 232 (399)
T PF00464_consen 169 -KPKLIICGASSYP--RPID---FKRFREIADEVGAYLMADISHIAGLIAGG-LFPNPF---------PYADVVTGSTHK 232 (399)
T ss_dssp ---SEEEEE-SSTS--S------HHHHHHHHHHTT-EEEEE-TTTHHHHHTT-SS--GC---------CTSSEEEEESSG
T ss_pred -CCCEEEECchhcc--CccC---HHHHHHHHHhcCcEEEecccccccceehh-eecCcc---------ccceEEEeeccc
Confidence 9997777765554 3455 788888899999999999998543 2322 222211 224688899999
Q ss_pred cCCCCCceEEEEeec-------------CHHHHHHHHHhhcccC-CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 175 DLSLPGFRTGVIYSY-------------NESVLAAAKKLTRFCS-ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
++ +|.|.|.|+++ ++++.+.+.+.-.++. .++.....++.+....+.+...+.++.+++-++++
T Consensus 233 tl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk 310 (399)
T PF00464_consen 233 TL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAK 310 (399)
T ss_dssp GG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred cc--cccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 99 77889999995 3889999987554432 23333332222222222223445788899999999
Q ss_pred HHHHHHHhCCCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc----CCCCcCCCCCCeEEEEecC--
Q 019899 241 SFVAGLKQLGIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT----PGSACHCIEPGWFRCCFTS-- 313 (334)
Q Consensus 241 ~~~~~l~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~~~~~~~iRi~~~~-- 313 (334)
.|.+.|.+.|+++. ....+..+|+++..... +..+ +...|++.||.+. |+. -.+..+..+|++...
T Consensus 311 ~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~-----~g~~-a~~~Le~~gI~vnkn~iP~d-~~~~~~sGlRlGT~~lT 383 (399)
T PF00464_consen 311 ALAEALQERGFKVVTGGTDNHQVLVDLRSFGI-----DGKE-AEKALEEAGIIVNKNTIPGD-RSPFVPSGLRLGTPALT 383 (399)
T ss_dssp HHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS------HHH-HHHHHHHTTEE-EEE--TTT-STTTT-SEEEEESHHHH
T ss_pred HHHHHHhhCCcEEEECCCCCCeEEEEeccccc-----chHH-HHHHHHhcCeeecccccCCC-CCCCCCCEEEECCHHHH
Confidence 99999999999987 34456678889865321 2234 4455888999875 333 111134689999764
Q ss_pred ---CCcccHHHHHH
Q 019899 314 ---LTHEDIPLVIE 324 (334)
Q Consensus 314 ---~~~~~l~~~l~ 324 (334)
..++|++++.+
T Consensus 384 ~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 384 RRGMKEEDMKEIAE 397 (399)
T ss_dssp HTT--HHHHHHHHH
T ss_pred hCCCCHHHHHHHHh
Confidence 24455554443
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-17 Score=150.29 Aligned_cols=287 Identities=12% Similarity=0.088 Sum_probs=175.5
Q ss_pred cEEE-ecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhh-hhhccC------------cEEEEEeCCCCC-CccccH
Q 019899 19 QIVL-TAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRD-IRFRTG------------VELIPVHCRSTD-NFAFSI 81 (334)
Q Consensus 19 ~i~~-~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~-~~~~~g------------~~v~~v~~~~~~-~~~~~~ 81 (334)
.+++ ++++++|+..++.... ....+|+....+|.+.... +. ..| ..+..+|.++.. ....|+
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 182 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLA-VTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTL 182 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHH-hcCCcccccCCCCCCCCeEEeCCCCccccchhHH
Confidence 5666 4899999999887652 3446788888888765432 21 111 124445542110 001367
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++.+++......++.+|++.......|. +.+.+.+++|.++|++||+++|+||++.++...|..+ ..... +
T Consensus 183 ~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-~~~~~----~ 257 (425)
T PRK09264 183 AYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF-SFERA----G 257 (425)
T ss_pred HHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH-HHhhc----C
Confidence 8888888653211124665655544777787 5678899999999999999999999998765544321 11111 1
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..++ +.+++|.++..|+++|++++ ++++ ..+.. ....++.++++..+..+.++.. +++ ....++++++
T Consensus 258 v~PD----i~t~~K~l~~~G~pigav~~-~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~--~~~--~~l~~~~~~~ 327 (425)
T PRK09264 258 ITPD----IVTLSKSISGYGLPMALVLI-KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEY--WSD--DAFEKEVKAK 327 (425)
T ss_pred CCCC----EEEeccccCCCccceEEEEE-chhh-hccCCCccCCCCCCCHHHHHHHHHHHHHH--Hhh--hHHHHHHHHH
Confidence 1122 34778999844999999999 5665 34332 2334566777766655555211 111 1234445555
Q ss_pred HHHHHHHHHhC----C-CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 239 YDSFVAGLKQL----G-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 239 ~~~~~~~l~~~----g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
.+++.+.|+++ + +.......|.+.++.++.. .....+... +.++||.+.+...+ ...+|++++.
T Consensus 328 g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~------~~~~~l~~~-~~~~Gv~~~~~~~~----~~~lr~~p~l 396 (425)
T PRK09264 328 GELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDG------ELAGKIAAE-AFENGLIIETSGPE----DEVVKLLPPL 396 (425)
T ss_pred HHHHHHHHHHHHHhCCCceecceecccEEEEEecCh------HHHHHHHHH-HHHCCCEEeccCCC----CCEEEEeCCC
Confidence 55555555442 2 1111233577778888642 223466777 44589999875432 3678888764
Q ss_pred -CCcccHHHHHHHHHHHHHH
Q 019899 314 -LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 -~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++++++++++|.+++++
T Consensus 397 ~~t~~ei~~~~~~l~~~l~~ 416 (425)
T PRK09264 397 TIDEEELEEGLDILEEAVAE 416 (425)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999998865
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-18 Score=152.85 Aligned_cols=286 Identities=13% Similarity=0.084 Sum_probs=174.3
Q ss_pred cEEE-ecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC------------cEEEEEeCCCCC-CccccHH
Q 019899 19 QIVL-TAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG------------VELIPVHCRSTD-NFAFSIT 82 (334)
Q Consensus 19 ~i~~-~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~~~~~~-~~~~~~~ 82 (334)
.+++ ++++++|+..++.... ....+|+....+|.+......-..| ..+..+|.++.. ...-+++
T Consensus 100 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 179 (412)
T TIGR02407 100 KVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIA 179 (412)
T ss_pred eEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHH
Confidence 4666 4899999999987653 2346788888888775433220211 122334431100 0012466
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc-hhhhhhhccc
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-SMAEILEAEE 160 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~-~~~~~~~~~~ 160 (334)
.+++.+++......++.+|++...+++.|. ..|.+.+++|.++|++||+++|+||++.++...|..+. ....
T Consensus 180 ~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~------ 253 (412)
T TIGR02407 180 YFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAG------ 253 (412)
T ss_pred HHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccC------
Confidence 777777643221135666665544888998 56888899999999999999999999987654443221 1111
Q ss_pred cCCCcEEEEecccccCCCC-CceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhC----ChHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLP-GFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLS----DTKFIQEYLETNKR 233 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~-g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~ 233 (334)
+.++ +.+++|+++ + |+++|++++ ++++ +.+.. ....++.|++...++.+.++ +.+ +.++..++.+
T Consensus 254 v~PD----i~~~~K~lg-~~G~pigav~~-~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~-l~~~~~~~g~ 325 (412)
T TIGR02407 254 IEPD----IVCLSKSIS-GYGLPLALTLI-KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDA-FEKAVQRKSE 325 (412)
T ss_pred CCCC----EEEechhcc-CCccceeEEEE-chhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccH-HHHHHHHHHH
Confidence 1133 346889998 6 999999999 5555 44432 23445667775555444433 221 2233333333
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 234 RIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
+++++.+.+.+.+.+ +.......|+++|+.++.. ....++...+ .++||.+.+... .++.+|++++.
T Consensus 326 ~l~~~l~~l~~~~~~--~~~~vrg~Gl~~~l~l~~~------~~~~~~~~~~-~~~Gv~v~~~~~----~~~~lr~~p~l 392 (412)
T TIGR02407 326 IIQERLDRIVAEYPE--LIKQVRGRGLMQGIECGDG------DLAGKIAKAA-FENGLIIETSGP----NDEVIKLLPPL 392 (412)
T ss_pred HHHHHHHHHHhhCCC--ceEeeecceeEEEEEecCh------HHHHHHHHHH-HHCCCEEeccCC----CCCEEEEECCC
Confidence 333333333222211 2233445688999999753 1234667774 458999976432 14679999875
Q ss_pred -CCcccHHHHHHHHHHHHH
Q 019899 314 -LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 314 -~~~~~l~~~l~~l~~~~~ 331 (334)
+++++++++++++.++++
T Consensus 393 ~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 393 TIDEETLQQGLDILEQAVE 411 (412)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 699999999999999885
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-19 Score=141.23 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=126.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh-hhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD-RDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~-~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.++.+.+++++++|+++++.+++.++.+++++|+++.++|++.. ..+. ..|.+++.++..+......+.+.
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~~~ 83 (170)
T cd01494 5 LEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAE-LAGAKPVPVPVDDAGYGGLDVAI 83 (170)
T ss_pred HHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHH-hcCCEEEEeccCCCCccchhhhh
Confidence 344444445457889999999999999999999888999999999999998 6776 88999999997543333333334
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++... +.+++++++++++||+|...+ +++|.++|+++|+++|+|++|+.+...... .... ..
T Consensus 84 ~~~~~~-----~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~----~~~~-----~~ 146 (170)
T cd01494 84 LEELKA-----KPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG----VLIP-----EG 146 (170)
T ss_pred hhhccc-----cCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc----cccc-----cc
Confidence 443322 248899999999999999999 688899999999999999999986654322 1111 14
Q ss_pred CcEEEEecccccCCCCCceEEEEee
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYS 188 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~ 188 (334)
+.++++.|++|.++. .++|+++.
T Consensus 147 ~~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 147 GADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred cCCEEEEEcccccCC--CceEEEEe
Confidence 567888999999974 67899886
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=152.14 Aligned_cols=279 Identities=12% Similarity=0.139 Sum_probs=179.7
Q ss_pred hhhhhcCCCCC-CCCcEEEecC-cHHHHHHHHHHhcC---CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 5 MSQVLGQAVSF-DPSQIVLTAG-ATPAVEILCFCLAD---HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 5 ~~~~~~~~~~~-~~~~i~~~~g-~~~~~~~~~~~l~~---~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
.++.+++.+++ +++++++|+| +|++++.++.++.. ++|.|+.....+ ...+.++ ..|.+++.++.++..++ .
T Consensus 49 ~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g~~~~-~~~~~a~-~~g~~~~~~~~~~~g~~-~ 125 (355)
T cd00611 49 AESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSA-KAAKEAK-RYGGVVVIVAAKEEGKY-T 125 (355)
T ss_pred HHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHH-HHHHHHH-hcCCCcEEEecccccCC-C
Confidence 34455556665 4568999988 99999999999976 555555422221 1222455 77999998887422112 1
Q ss_pred c-HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 80 S-ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 80 ~-~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+ .+..+..+++ ++++|.+++..|.||..++ ++++.+|+++++|.+++. |....++..+
T Consensus 126 ~~~~~~~~~~~~------~~~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs~----g~~~idv~~~--- 184 (355)
T cd00611 126 KIPDVETWDLAP------DAAYVHYCSNETIHGVEFD--------EVPDTGGVPLVADMSSNI----LSRPIDVSKF--- 184 (355)
T ss_pred CCCCHhhcCCCC------CCCEEEEeCCcccccEEcc--------eecccCCCeEEEEccccc----cCCCCCHHHh---
Confidence 3 2222233333 7899999999999999854 234459999999999876 3334454432
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--------------hcccCCChHHHHHHHHhhCChHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--------------TRFCSISAPTQRLLISMLSDTKFI 224 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~ 224 (334)
+ +.+.|.+|.+|++| +|.+++ ++++.+++... ...+++|.....++.++++...
T Consensus 185 -----~--~~~ss~~K~lGP~G--~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~-- 252 (355)
T cd00611 185 -----G--VIYAGAQKNLGPAG--VTVVIV-RKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLK-- 252 (355)
T ss_pred -----C--EEEeecccccCCCc--eEEEEE-CHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHH--
Confidence 2 35566899988666 788888 67666554321 0123445556666666664321
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhC-CCc-ccC-C--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 225 QE-YLETNKRRIKKLYDSFVAGLKQL-GIR-CSE-S--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 225 ~~-~~~~~~~~~~~~~~~~~~~l~~~-g~~-~~~-~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+. .++.+.++.++..+++.+.|+++ |+. ... + ..+..+.+.++.. ....++... +.+.|+.+.++..
T Consensus 253 ~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~------~l~~~~~~~-~~r~G~~~~~~~~ 325 (355)
T cd00611 253 EQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE------ELEKEFLKE-AEAAGMIGLKGHR 325 (355)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh------hhhHHHHHH-HHHCCCcccCCCc
Confidence 22 36788899999999999999998 763 211 1 2223355555542 011233344 4558997666653
Q ss_pred cCCCCCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 299 CHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
..+.+|+|+.. .+++|++++++.|+++.
T Consensus 326 ----~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 326 ----SVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred ----ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 24689999985 59999999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-17 Score=143.78 Aligned_cols=275 Identities=15% Similarity=0.145 Sum_probs=171.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.++++... ..+..+.+++++.|+.+++.++.++||+|+++.+.|.+... .+. ..|.+++.+++++.+.+.+
T Consensus 69 lE~~la~le--g~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~-~~Gi~v~fvd~~~~~~~~l- 144 (384)
T PRK06434 69 FEEKYAVLE--NAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLK-TLGIHVDYIDTDRLNSLDF- 144 (384)
T ss_pred HHHHHHHHh--CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHH-hcCcEEEEECCCChhheee-
Confidence 334444333 34578999999999999999999999999999888877664 344 5799999999743222221
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+. .++++|++.+|+||++.+.| +++|.++|++++ +++|.+++.. ....++.
T Consensus 145 --------~~-----~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-------~~~~pl~---- 195 (384)
T PRK06434 145 --------DP-----SNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-------YNQNPLD---- 195 (384)
T ss_pred --------cC-----CCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-------ccCCchh----
Confidence 11 26899999999999999988 999999999998 4669997421 1111111
Q ss_pred cCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.+++++|.+|.++.+| .=.|.+++.++++.+.++.....++ .++.....+..-++. +..+.++..+
T Consensus 196 --~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t-------L~~R~~r~~~ 266 (384)
T PRK06434 196 --LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT-------LGLRMEKHNK 266 (384)
T ss_pred --cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc-------HHHHHHHHHH
Confidence 466788999999996444 4467777767777777765543322 233322222222222 2344555667
Q ss_pred HHHHHHHHHHhCC-Cc-cc-----------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc-----
Q 019899 238 LYDSFVAGLKQLG-IR-CS-----------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC----- 299 (334)
Q Consensus 238 ~~~~~~~~l~~~g-~~-~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~----- 299 (334)
++..+.+.|+++. ++ +. ..-+| .+.+++.. .+....+.+. ++-..+.+.-|...
T Consensus 267 ~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~-~~sf~l~~------~~~~~~f~~~-l~l~~~~~slG~~~sl~~~ 338 (384)
T PRK06434 267 NGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGG-MLSFELRS------MEDVHKFIRN-LEIPMVAASLGGVESLITL 338 (384)
T ss_pred HHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCc-eEEEEECC------HHHHHHHHHh-CCcceEccCCCCCCeeeEC
Confidence 7777777887762 21 11 11233 34466642 1122333333 22222222222210
Q ss_pred -----CC-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 300 -----HC-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 -----~~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
+. ..++-+|+|++ .|+.+.+++.|.+++++
T Consensus 339 p~~~~h~~~~~e~~~~~gi~~~liRlsvG---lEd~~dLi~dl~~Al~~ 384 (384)
T PRK06434 339 PVETSHSSLSPEERERLGISDNLVRFSIG---IEDIDDLIKDIENALSK 384 (384)
T ss_pred CCccccccCCHHHHHhcCCCcCeEEEEeC---cCCHHHHHHHHHHHhcC
Confidence 00 02357999999 77888999999988753
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=149.09 Aligned_cols=278 Identities=14% Similarity=0.136 Sum_probs=176.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhc------C-CCCeEEecCCCCCCh-hhhhhhccCcEEEEEeCCC-CCCc----cccHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLA------D-HGNALLVPSPYYPGF-DRDIRFRTGVELIPVHCRS-TDNF----AFSITA 83 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~------~-~gd~vl~~~p~~~~~-~~~~~~~~g~~v~~v~~~~-~~~~----~~~~~~ 83 (334)
.+.+++++++++|+..++.... + ...+|+..+.+|.+. ...+. ..|.........+ ..++ ..|++.
T Consensus 93 ~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~d~~~ 171 (395)
T PRK03715 93 FDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMS-ASGKPGWDTIFAPQVPGFPKAELNDIAS 171 (395)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHh-hcCCcccccCCCCCCCCceeeCCchHHH
Confidence 4689999999999999988764 1 225677777766654 34444 4443211110000 0111 247888
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc-hhhhhhhcccc
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-SMAEILEAEEV 161 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~-~~~~~~~~~~~ 161 (334)
+++.+++ ++.+|++...++..|.+. +.+.++++.++|++||+++|+||++.++...|..+. ....+
T Consensus 172 l~~~l~~------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv------ 239 (395)
T PRK03715 172 VEKLITD------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGI------ 239 (395)
T ss_pred HHHHcCC------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCC------
Confidence 8888864 677677665577888875 578899999999999999999999997544444321 11111
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH-HhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK-KLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
.+| +.+++|.++ .|+++|.+++ ++++..... .+...++.+++...++.+.++.. ++ ....++++++.+
T Consensus 240 ~PD----i~t~gK~lg-~G~p~~av~~-~~~i~~~~~~~~~~T~~g~pl~~aaala~L~~l---~~--~~l~~~~~~~g~ 308 (395)
T PRK03715 240 EPD----IMTLGKGIG-GGVPLAALLA-KAEVAVFEAGDQGGTYNGNPLMTAVGVAVISQL---LA--PGFLEGVRARGE 308 (395)
T ss_pred CCc----eeeehhhhh-CCcceEEEEE-ccccccccCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHH
Confidence 122 357899998 7899999998 666642211 12344566777766666665432 21 234556666667
Q ss_pred HHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhc---CeEEcCCCCcCCCCCCeEEEEecC
Q 019899 241 SFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIA---KINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 241 ~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
++.+.|+++ ++.-... .|.++.+.+... ....+... +.+. ||.+.+.. ++.+|++++.
T Consensus 309 ~l~~~L~~l~~~~~i~~vrG-~Glm~~i~l~~~-------~~~~~~~~-~~~~~~~Gi~~~~~~------~~~lR~~p~l 373 (395)
T PRK03715 309 YLKEKLLELSEERGLEGERG-EGLLRALLLGKD-------IGPQIVEK-ARDMQPDGLLLNAPR------PNLLRFMPAL 373 (395)
T ss_pred HHHHHHHHHhhcCCcCeEEc-ceeEEEEEecCc-------hHHHHHHH-HHhccCCCEEEeecC------CCEEEEeCCc
Confidence 777777653 4332233 355666666532 11233333 3334 99886422 3579999885
Q ss_pred -CCcccHHHHHHHHHHHHHHc
Q 019899 314 -LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 314 -~~~~~l~~~l~~l~~~~~~~ 333 (334)
+|++++++++++|.++++++
T Consensus 374 ~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 374 NVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred ccCHHHHHHHHHHHHHHHHhh
Confidence 69999999999999998764
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=148.55 Aligned_cols=280 Identities=10% Similarity=0.085 Sum_probs=187.4
Q ss_pred hhcCCCCCC-CCcEEEe-cCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 8 VLGQAVSFD-PSQIVLT-AGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 8 ~~~~~~~~~-~~~i~~~-~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
.+.+.++.+ ..+++++ ++++.++.+++.++..+|+++++..-..++ +.+.++ ..|.. +.+......+ ..+..+
T Consensus 56 ~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~-~~g~~-~~~~~~~~~g-~~~~~~ 132 (360)
T PRK05355 56 DLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAK-KYGEV-NVAASSEDDG-FTYIPP 132 (360)
T ss_pred HHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHH-HhCCc-eEEecccccC-CCCCCC
Confidence 333445442 3456666 567889999999999999888877654443 233455 67754 5555432133 334444
Q ss_pred HHH-HHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 84 LDQ-AFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~-~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++ .+++ ++++|.+++..|.||...+ ++.++ +|+++++|.+.+. +....++..
T Consensus 133 ~~~~~l~~------~~~~V~~th~eTstGv~~~--~i~~i------~g~l~vVDavss~----g~~~idv~~-------- 186 (360)
T PRK05355 133 LDEWQLSD------DAAYVHYTSNETIDGTEFH--ELPDT------GDVPLVADMSSDI----LSRPIDVSK-------- 186 (360)
T ss_pred hhhccCCC------CCCEEEEccCCCcceEecC--ccccc------CCCcEEEEcCccc----cCccCCHHH--------
Confidence 444 5654 6899999999999999983 25555 8999999999875 333344432
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-h-------------hcccCCChHHHHHHHHhhCChHHHHH-H
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-L-------------TRFCSISAPTQRLLISMLSDTKFIQE-Y 227 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 227 (334)
.+ +++.|.+|.+|++| +|.++. ++++.+++.. . ..++++|....+++.++++... +. .
T Consensus 187 ~d--~~~~ssqK~lgP~G--lg~l~~-s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~--~~gG 259 (360)
T PRK05355 187 FG--LIYAGAQKNIGPAG--LTIVIV-REDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLK--EQGG 259 (360)
T ss_pred cc--EEEEeccccccCCc--eEEEEE-CHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHH--HccC
Confidence 33 77889999998666 788888 6666555433 1 1234556666677777765422 33 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-ccCC---CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQLGIR-CSES---SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE 303 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~ 303 (334)
++++.++.++..+++.+.|+++++. ...+ ..+..+.+.+|.. .+..++... +.++|+.+.+|.. .
T Consensus 260 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~------~~~~~~~~~-~~~~Gi~~~~~~~----~ 328 (360)
T PRK05355 260 VAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE------ELDKKFLAE-AKAAGLVGLKGHR----S 328 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh------HHHHHHHHH-HHHCCCcccCCCC----c
Confidence 6888899999999999999998753 2111 2234455666653 122345555 4558999866663 2
Q ss_pred CCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 304 PGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 304 ~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
.+.+|+|+.. .+.+|++++++.|+++++++.
T Consensus 329 ~g~vRiS~~~~nt~eei~~l~~~l~~~~~~~~ 360 (360)
T PRK05355 329 VGGMRASIYNAMPLEGVQALVDFMKEFERRHG 360 (360)
T ss_pred cCcEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4689999886 699999999999999998763
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-17 Score=146.03 Aligned_cols=286 Identities=8% Similarity=-0.024 Sum_probs=189.7
Q ss_pred hhhhhhhcCCCCCCCC--cEEEecCcHHHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc
Q 019899 3 GFMSQVLGQAVSFDPS--QIVLTAGATPAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~i~~~~g~~~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 78 (334)
+|+.+.++ .+++ .=++|+|+|+++..++.+.-+ +...++++..+|+++..++. .+|.+++.||+ +.++.
T Consensus 140 ~wla~L~g----~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~-llgi~~~~Vp~--d~~g~ 212 (470)
T PLN02263 140 DWFARLWE----IEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR-MYRMECVKVDT--LVSGE 212 (470)
T ss_pred HHHHHHhC----CCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHH-hcCCcceEecc--CCCCc
Confidence 56666555 3332 347899999999988777532 23478899999999999999 99999999998 45678
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCc-----EEEEeccccccccCCCCcchhh
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI-----HVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
+|+++|+++|++. +.++-+|+.+.+++++|.+-| +++|.++|+++|+ |+++|.+|+++..+-....+..
T Consensus 213 mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~ 286 (470)
T PLN02263 213 IDCADFKAKLLAN---KDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKV 286 (470)
T ss_pred CcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccccc
Confidence 9999999999763 123566777778999999999 9999999999996 9999999988654211111111
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-------cCCChHHHHHHHHhhCChHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-------CSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
.+ ....+-+..+++|+++ .....|.++.++ ...+.+.....+ ...+.....++..|.....+..+
T Consensus 287 df------~~~vDSIsvD~HK~l~-~P~~cgvll~R~-~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~ 358 (470)
T PLN02263 287 TF------KKPIGSVSVSGHKFVG-CPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYR 358 (470)
T ss_pred CC------CcCccEEEECCccccC-CCcCEEEEEEeh-hhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHH
Confidence 11 1223334568999886 778899999854 433433221111 11222222222222221112245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCe
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~ 306 (334)
.+.+..++..++++++.+.|++.|+.....+....+.+.-|. .+. . .+|-.+.. .++.
T Consensus 359 G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~p~----------~~~----~-~~gW~L~~-------~~~~ 416 (470)
T PLN02263 359 GFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPK----------DEE----F-VRRWQLAC-------QGNI 416 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEecCc----------hHH----h-hcceEEcc-------CCCc
Confidence 567788888899999999999998876543334334344332 111 1 13544443 1346
Q ss_pred EEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 307 FRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 307 iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
+++++.. .+.+.++++++.|++..+
T Consensus 417 ~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 417 AHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 8999886 688999999999998765
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=155.50 Aligned_cols=225 Identities=10% Similarity=0.059 Sum_probs=144.4
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc----ccc-----HHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF----AFS-----ITALDQA 87 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~----~~~-----~~~l~~~ 87 (334)
....+++||+|.++.+++++++++||+|+++..||.+...++. +.|+.+++++... +.+ .++ .+.++++
T Consensus 221 ~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~-L~ga~Pvyl~P~~-~~~Gi~~~i~~~~~~~e~i~~~ 298 (755)
T PRK15029 221 DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLI-LTGAKPVYMVPSR-NRYGIIGPIYPQEMQPETLQKK 298 (755)
T ss_pred CcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-HcCCeEEEecccc-cccCCccCCCccccCHHHHHHH
Confidence 3578999999999999999999999999999999999999999 9999999997432 222 234 8899999
Q ss_pred HHHHHH----cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 88 FNQARK----RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 88 l~~~~~----~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++... .+.+++++++++|+. .|++++ +++|+++|++++++|++||||+....-++.+....++........
T Consensus 299 l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~ 374 (755)
T PRK15029 299 ISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHN 374 (755)
T ss_pred HHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccC
Confidence 876421 223566999999976 699999 999999999999999999999874311222221122200000002
Q ss_pred Cc-EEEEecccccCCCCCceEEEEe-ecCH--HH-HHHHHHhhcccCCChHHHHHHHHhhCChHHHHH-HHHHHHHHHHH
Q 019899 164 DR-VHIIYGLSKDLSLPGFRTGVIY-SYNE--SV-LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQE-YLETNKRRIKK 237 (334)
Q Consensus 164 ~~-~~~~~s~sK~~~~~g~r~g~i~-~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 237 (334)
+. ++++.|.||++ +++..|.++ ..+. .+ .++++..-..+..++++-..++.+-....+++. .-.+..++..+
T Consensus 375 Gad~~vvqStHKtL--~alTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~ 452 (755)
T PRK15029 375 GPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVID 452 (755)
T ss_pred CCceEEEEchhhcc--cchhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33 48889999999 455555543 3222 11 245554444443333333333333222222332 23344445555
Q ss_pred HHHHHHHHHHhC
Q 019899 238 LYDSFVAGLKQL 249 (334)
Q Consensus 238 ~~~~~~~~l~~~ 249 (334)
....+++.+.+.
T Consensus 453 ~~~~~r~~l~~~ 464 (755)
T PRK15029 453 EAVDFRQAMARL 464 (755)
T ss_pred HHHHHHHHHHhc
Confidence 556666666443
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=135.83 Aligned_cols=291 Identities=17% Similarity=0.122 Sum_probs=195.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
|...++++. ..|+.++.++...|+..++.+++.|.|.|+.+...|.+..+.++ ++.. ..+.|+-.+
T Consensus 117 LE~kiAqfh--~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGir-Lckr-----------y~h~dv~~l 182 (417)
T KOG1359|consen 117 LESKIAQFH--GREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIR-LCKR-----------YRHVDVFDL 182 (417)
T ss_pred HHHHHHHHh--CCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhH-HHhh-----------hccchhHHH
Confidence 344455443 36788899999999999999999999999999999999988887 5541 114577777
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
+..+....++ +.++|+-...-...|.+.| +++|++++++||.++++||+|+.+.++..+... .+.. +...+
T Consensus 183 ~~~l~~a~k~--r~klv~TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt-~E~~---~vm~~ 253 (417)
T KOG1359|consen 183 EHCLISACKM--RLKLVVTDGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFFGETGRGT-AEEF---GVMGD 253 (417)
T ss_pred HHHHHHhhhh--eEEEEEecceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceeecCCCCCh-HHHh---CCCCc
Confidence 7776654332 5665544444679999999 999999999999999999999988775433222 2222 12245
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc--C--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--S--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
.++..++++|.+| |...||+.+ +..+++.++....+| + .++........++.. +... .+...+.+.+.+
T Consensus 254 vdiinsTLgKAlG--ga~GGyttg-p~~li~llrqr~RpylFSnslppavV~~a~ka~dl---lm~s-~~~i~~~~a~~q 326 (417)
T KOG1359|consen 254 VDIINSTLGKALG--GASGGYTTG-PKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDL---LMVS-SKEIQSRQANTQ 326 (417)
T ss_pred ceehhhhhhhhhc--CCCCCCccC-ChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHH---HHhh-HHHHHHHHHHHH
Confidence 5667789999995 233499998 788888888665443 2 222222222222221 1111 334456677788
Q ss_pred HHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC-CCCCCeEEEEecC-CCccc
Q 019899 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH-CIEPGWFRCCFTS-LTHED 318 (334)
Q Consensus 241 ~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~~~~~~iRi~~~~-~~~~~ 318 (334)
++++.++..|+.+.....+ .+.+-+.. -+.+....++||+ .||.+..-++.- +.....+|+-++. .+++|
T Consensus 327 rfr~~me~aGftIsg~~hP-I~pv~lGd------a~lA~~~ad~lLk-~Gi~Vigfs~PvVP~gkariRVqiSAaHt~ed 398 (417)
T KOG1359|consen 327 RFREFMEAAGFTISGASHP-ICPVMLGD------ARLASKMADELLK-RGIYVIGFSYPVVPKGKARIRVQISAAHTEED 398 (417)
T ss_pred HHHHHHHhcCceecCCCCC-ccceeccc------HHHHHHHHHHHHh-cCceEEeecCCcCCCCceEEEEEEehhcCHHH
Confidence 9999999889988764322 22122211 1344678889888 799987433221 1234578888875 69999
Q ss_pred HHHHHHHHHHHHHHc
Q 019899 319 IPLVIERIQKVAETC 333 (334)
Q Consensus 319 l~~~l~~l~~~~~~~ 333 (334)
++++++++.++.+.+
T Consensus 399 id~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 399 IDRLIEAFSEVGRFL 413 (417)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-17 Score=136.83 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=119.7
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
.-+.+++++.|+..++..++++||.|+...--|.+....+. ...|.++..++. .|+++++++|++
T Consensus 79 aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~-------~d~~~~~~aI~~----- 146 (426)
T COG2873 79 AALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP-------DDPENFEAAIDE----- 146 (426)
T ss_pred hhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCC-------CCHHHHHHHhCc-----
Confidence 35678889999999999999999999999998887665544 157999999983 368999999998
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccccc
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKD 175 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~ 175 (334)
++|+|++..-.||.+.+.| +++|.++|+++|+++|+|..+.. +.-+.++ +.+.+++++|++|+
T Consensus 147 -nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~at-------pyl~rP~------~hGADIVvHS~TK~ 209 (426)
T COG2873 147 -NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFAT-------PYLCRPI------EHGADIVVHSATKY 209 (426)
T ss_pred -ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCc-------ceecchh------hcCCCEEEEeeccc
Confidence 9999999999999999999 99999999999999999998753 1223333 26888999999999
Q ss_pred CCCCCceEEEEee
Q 019899 176 LSLPGFRTGVIYS 188 (334)
Q Consensus 176 ~~~~g~r~g~i~~ 188 (334)
+|..|-.+|-++.
T Consensus 210 igGhGt~iGG~iV 222 (426)
T COG2873 210 IGGHGTAIGGVIV 222 (426)
T ss_pred ccCCccccceEEE
Confidence 9889988888876
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-17 Score=145.61 Aligned_cols=281 Identities=18% Similarity=0.142 Sum_probs=179.1
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc-----CCCCeEEecCCCCCChhhhhhhccCcE------------EEEEeCCCCCCcc
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA-----DHGNALLVPSPYYPGFDRDIRFRTGVE------------LIPVHCRSTDNFA 78 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~-----~~gd~vl~~~p~~~~~~~~~~~~~g~~------------v~~v~~~~~~~~~ 78 (334)
..+.+++++++++|+..++.... ....+|+....+|.+.........+.. +..+|.
T Consensus 133 ~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~------- 205 (442)
T TIGR03372 133 KLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF------- 205 (442)
T ss_pred CcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------
Confidence 34679999999999999987542 134578888888876543322022211 122221
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
.|.+.+++.+++...++.++.+|++.......|.+. |.+.++++.++|++||+++|+||++.++...|..+ .....
T Consensus 206 ~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-a~e~~-- 282 (442)
T TIGR03372 206 GDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-ACEHE-- 282 (442)
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccch-hhhhc--
Confidence 257788888765433344667666654477778866 56679999999999999999999997754444321 11111
Q ss_pred ccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH----hhcccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK----LTRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
+..+| +.+++|.+| .| +++|.+++ ++++.+.+.. +.+.++.|+.+..++.+.++..+ + +...
T Consensus 283 --gv~PD----ivt~gK~lg-~G~~Pigavv~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~--~---~~l~ 349 (442)
T TIGR03372 283 --GVQPD----ILCLAKALG-GGVMPIGATIA-TEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELL--E---KNLP 349 (442)
T ss_pred --CCCCC----eeeehhhhc-CCcccceEEEe-cHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHH--h---ccHH
Confidence 11122 235899998 88 68999998 7888877732 23456678888887777775432 1 1233
Q ss_pred HHHHHHHHHHHHHHHhCC--Cc-c--cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 233 RRIKKLYDSFVAGLKQLG--IR-C--SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g--~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
++.+++-+++.+.|+++. .. . .....|.++.+++... .....+...+++ +||.+.+... .++.+
T Consensus 350 ~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~------~~~~~i~~~l~~-~Gvl~~~~~~----~~~~l 418 (442)
T TIGR03372 350 AQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN------EIGYAFAKELFQ-QNILVAGTLN----NAKSI 418 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCCh------HHHHHHHHHHHH-CCcEEeecCC----CCCEE
Confidence 445555566666665531 11 1 1123466666777542 123567777555 8999865321 13689
Q ss_pred EEEecC-CCcccHHHHHHHHHHHH
Q 019899 308 RCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 308 Ri~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
|+.++. +++++++++++++.+++
T Consensus 419 r~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 419 RIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred EEECCcccCHHHHHHHHHHHHHhC
Confidence 998774 69999999999998763
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-16 Score=137.58 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=143.1
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
..++++++++..|+..++..+++.|++|+.....|......++. ..|.+...+++ -+++++++++++
T Consensus 92 a~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~-------~~~~~~~~~i~~--- 161 (409)
T KOG0053|consen 92 AAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV-------DDLKKILKAIKE--- 161 (409)
T ss_pred CceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech-------hhHHHHHHhhcc---
Confidence 44699999999999999999999999999999999998877662 35777777664 257778888876
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++.+|.||+..+.| ++++.++|+++|++|++|+.++.. ....++ + .+.+++++|.+
T Consensus 162 ---~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p-------~~~~pL-~-----lGADIV~hSaT 222 (409)
T KOG0053|consen 162 ---NTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSP-------YNQDPL-P-----LGADIVVHSAT 222 (409)
T ss_pred ---CceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcc-------cccChh-h-----cCCCEEEEeee
Confidence 7999999999999999999 999999999999999999998641 122222 1 57889999999
Q ss_pred ccCC-CCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 174 KDLS-LPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 174 K~~~-~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
|.++ -+.+=.|.++...+++.++++..... +..++.....+.+-++.. .-+.++..+++..+.+.|+..
T Consensus 223 Kyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl-------~lRi~~~~ena~~~A~~Le~~ 294 (409)
T KOG0053|consen 223 KYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTL-------HLRINKHSENALKIALLLEAH 294 (409)
T ss_pred eeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchh-------hhhHHHHHHHHHHHHHHhhhC
Confidence 9994 33455566666458888888776544 344544444443333332 223334445555555555553
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-16 Score=144.02 Aligned_cols=289 Identities=15% Similarity=0.090 Sum_probs=173.7
Q ss_pred EEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC------------cEEEEEeCCCCCCccc------
Q 019899 20 IVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG------------VELIPVHCRSTDNFAF------ 79 (334)
Q Consensus 20 i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~~~~~~~~~~------ 79 (334)
+++++++++|+..++.... ....+|+....+|.+......-..| ..+..++.+ +.+..
T Consensus 105 ~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 182 (442)
T TIGR00709 105 QFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYP--HEYRCPFGIGG 182 (442)
T ss_pred EEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCC--ccccccccCCc
Confidence 4556899999999987642 3346788888888776543331222 112333321 11111
Q ss_pred --cHHH----HHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 80 --SITA----LDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 80 --~~~~----l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
+.+. +++.+++......++.++++...++..|. ..|.+.++++.++|++||+++|.||++.+|.+.|..+ ..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~ 261 (442)
T TIGR00709 183 EAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF-AF 261 (442)
T ss_pred hhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh-HH
Confidence 1222 23333321112235676766655655565 5788899999999999999999999999887666432 22
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
.... ..+| ++ +++|.++ .|+++|++++ ++++ +.+.. +..+++.|+..+.++.+.++..+ + ..
T Consensus 262 ~~~g----v~PD--iv--~~gK~l~-~G~Pigav~~-~~~~-~~~~~~~~~~T~~gnpla~aaa~a~L~~i~--~---~~ 325 (442)
T TIGR00709 262 EHAG----IEPD--FV--VMSKAVG-GGLPLAVLLI-APEF-DAWQPAGHTGTFRGNQLAMVTGTEALNYWK--D---DN 325 (442)
T ss_pred HHcC----CCCc--EE--EEccccc-CCcccEEEEE-chHH-hccCCCcCCCCCCcCHHHHHHHHHHHHHHH--h---cC
Confidence 2221 1122 22 3899998 6999999998 5554 44421 23556788999888888875422 1 12
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCC------C--ChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 231 NKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPS------Y--SEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~------~--~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
..++++++.+++.+.|+++ ++......-|.+..+++.+.... . .......+...+ .++|+.+.+...
T Consensus 326 l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gvl~~~~~~ 404 (442)
T TIGR00709 326 LAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGAC-FENGLLLETGGR 404 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHH-HHCCeEEeecCC
Confidence 3445555666666666543 22111222355666666432110 0 011233455554 458999876432
Q ss_pred cCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 299 CHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
..+.+|+..+. +|+++++++++++.+++++
T Consensus 405 ----~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 405 ----EGEVFRLLCPITIDQEECEEGISRFKQAVEE 435 (442)
T ss_pred ----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 14678988774 6999999999999998865
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=145.57 Aligned_cols=298 Identities=12% Similarity=0.127 Sum_probs=177.0
Q ss_pred CcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCCCCc
Q 019899 18 SQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRSTDNF 77 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~~~~ 77 (334)
+.+++++++++|+..++..... ...+|+....+|.+......-..|. .+..+|.++....
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (451)
T PRK07678 106 YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRM 185 (451)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccc
Confidence 5899999999999998876421 2357888888887654322202221 1222332111100
Q ss_pred -------ccc---HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCC
Q 019899 78 -------AFS---ITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGN 146 (334)
Q Consensus 78 -------~~~---~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~ 146 (334)
..+ ++.+++.++. ....++.+|++...+...|.+. +.+.++++.++|++||+++|+||++.+|...|
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG 263 (451)
T PRK07678 186 PGIESEDIYDLECVKEIDRVMTW--ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTG 263 (451)
T ss_pred cccCChHHHHHHHHHHHHHHHHh--cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCc
Confidence 011 2234455542 1223566666654466677765 56679999999999999999999998765544
Q ss_pred CCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--------hhcccCCChHHHHHHHHh
Q 019899 147 EEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK--------LTRFCSISAPTQRLLISM 217 (334)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 217 (334)
..+ ..... +..+| +.+++|.+| .| +++|.+++ ++++.+.+.. +..+++.|+.+..++.+.
T Consensus 264 ~~~-~~~~~----gv~PD----ivt~gK~lg-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~ 332 (451)
T PRK07678 264 KAF-GFMNY----GVKPD----IITMAKGIT-SAYLPLSATAV-KKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKN 332 (451)
T ss_pred hhH-HHHhc----CCCCC----EEEeecccc-cCCcceeEEEE-cHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHH
Confidence 321 11111 11122 336899998 77 69999998 8888888753 234567788888887777
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccCCCceeEEeeecCCcCCCC---ChhhHHHHHHHHHHhcC
Q 019899 218 LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPSY---SEKGELELWDKLLNIAK 290 (334)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~~g 290 (334)
++..+ ++ ...++++++-+++.+.|++ +++......-|.+..+.+....... .......+...++ ++|
T Consensus 333 l~~l~--~~---~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~-~~G 406 (451)
T PRK07678 333 LEIME--NE---NLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACK-EKG 406 (451)
T ss_pred HHHHH--hC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHH-HCC
Confidence 75432 11 2333444455555555543 3332212223555556664221110 1122345666644 489
Q ss_pred eEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 291 INVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 291 i~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
|.+.+.....+...+.+|++... +|++|++++++++.+++++.+
T Consensus 407 v~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (451)
T PRK07678 407 LIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK 451 (451)
T ss_pred cEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 99876322111224679999874 599999999999999998764
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-17 Score=149.44 Aligned_cols=291 Identities=16% Similarity=0.172 Sum_probs=182.6
Q ss_pred cEEEecCcHHHHHHHHHHhc----C----------------------CCCeEEecCCCCCChhhhhhhccCc---EEEEE
Q 019899 19 QIVLTAGATPAVEILCFCLA----D----------------------HGNALLVPSPYYPGFDRDIRFRTGV---ELIPV 69 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~----~----------------------~gd~vl~~~p~~~~~~~~~~~~~g~---~v~~v 69 (334)
.=++|+|+|+++..++.+.. . ++..|+++.-.|++....+. ..|. +++.+
T Consensus 161 ~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~-~lglg~~~v~~v 239 (522)
T TIGR03799 161 LGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAAD-VLGIGRDNLIAI 239 (522)
T ss_pred CeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHH-HcCCCcccEEEE
Confidence 35678999999887765531 1 23578889999999998888 7787 78899
Q ss_pred eCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc
Q 019899 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF 149 (334)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~ 149 (334)
|++ +++.+|+++|+++|++....+.++-+|+.+..++.||.+.| +++|.++|+++|+|+++|.+|+.......
T Consensus 240 p~d--~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~-- 312 (522)
T TIGR03799 240 KTD--ANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSN-- 312 (522)
T ss_pred EeC--CCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCH--
Confidence 983 55689999999999866555444554555566889999999 99999999999999999999986332111
Q ss_pred chhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-------------cCCChHHHH-HHH
Q 019899 150 VSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-------------CSISAPTQR-LLI 215 (334)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~ 215 (334)
....+.. ++ ...+.+..+.+|+++ ....+|+++.+++.+.+.+.....+ +..+..... .+.
T Consensus 313 -~~r~~l~--gl-e~aDSit~d~HK~l~-~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw 387 (522)
T TIGR03799 313 -TYRHLLK--GI-ERADSVTIDAHKQLY-VPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVY 387 (522)
T ss_pred -HHHHHhc--Cc-hhCCEEEEChhhcCC-cCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHH
Confidence 1111111 11 244567789999875 4466899988777776655432111 111211111 122
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC-ceeEEeeecCCcCCCC----C-----------hhhH
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESS-AGLYCWADMSGLIPSY----S-----------EKGE 278 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~-~g~~~~~~~~~~~~~~----~-----------~~~~ 278 (334)
..++.. ....++++.++..++++++.+.|++. ++++..+. -+.++|-..|...... . ..--
T Consensus 388 ~aL~~l--G~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln 465 (522)
T TIGR03799 388 AGLHII--GRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLT 465 (522)
T ss_pred HHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHH
Confidence 222221 23456788888999999999999887 88877553 4444433334322110 0 0011
Q ss_pred HHHHHHHHHhcCeEEcCCCCcC-----CCCCCeEEEEecC--CCcccHHHHHHH
Q 019899 279 LELWDKLLNIAKINVTPGSACH-----CIEPGWFRCCFTS--LTHEDIPLVIER 325 (334)
Q Consensus 279 ~~~~~~ll~~~gi~v~~g~~~~-----~~~~~~iRi~~~~--~~~~~l~~~l~~ 325 (334)
..+.++ +.+.|.......... ......+|+++++ +++++++.+++.
T Consensus 466 ~~i~~~-~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 466 KFIQKR-QREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred HHHHHH-HHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence 234444 334565433211111 1112469999885 578888887765
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-16 Score=142.48 Aligned_cols=290 Identities=12% Similarity=0.107 Sum_probs=174.7
Q ss_pred CcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhh-hhhhccC-------------cEEEEEeCCCCCC--c-c
Q 019899 18 SQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDR-DIRFRTG-------------VELIPVHCRSTDN--F-A 78 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~-~~~~~~g-------------~~v~~v~~~~~~~--~-~ 78 (334)
+.+++++++++|+..++... .....+|+....+|.+... .+. ..+ ..+..+|.++... + .
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als-~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 182 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLS-MSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEE 182 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHh-hcCCCcccccCCCCCCCCcEEeCCCccccccccC
Confidence 58999999999999998753 2234568877777776532 222 211 1133344321100 0 0
Q ss_pred ccH-------HHHHHHHHHHHHcCCceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc
Q 019899 79 FSI-------TALDQAFNQARKRGVKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV 150 (334)
Q Consensus 79 ~~~-------~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~ 150 (334)
.+. +++++.+++.. ...++.+|++...++..|.+ .|.+.++++.++|++||+++|+||++.++...|..+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a 261 (445)
T PRK08593 183 PDANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSS 261 (445)
T ss_pred CcHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHH
Confidence 111 23333332210 12357766666557777886 6788899999999999999999999987654443211
Q ss_pred hhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 151 SMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
.... +..++ +.+++|.++ .|+++|++++ ++++.+.+... ...++.+++...++.+.++..+ +
T Consensus 262 -~~~~----gv~pD----i~t~gK~l~-~G~p~gav~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~---~-- 325 (445)
T PRK08593 262 -ISHF----NITPD----LMSFGKSLA-GGMPMSAIVG-RKEIMESLEAPAHLFTTGANPVSCAAALATIDMIE---D-- 325 (445)
T ss_pred -HHhc----CCCCC----Eeeeccccc-CCcccEEEEE-cHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHH---h--
Confidence 1111 11122 447899998 8899999998 88888887532 2345677777777777765432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcC--CCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 229 ETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLI--PSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
....++++++.+++.+.|+++ ++......-|.+..+.+.... ..........+...++ ++||.+.+..
T Consensus 326 ~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~~----- 399 (445)
T PRK08593 326 ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCF-EHGVVIIAVA----- 399 (445)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHH-HCCeEEeccC-----
Confidence 133445555556666666543 221111223444445553211 1111122345777754 4899986532
Q ss_pred CCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 303 EPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 303 ~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.+.+|+.++. ++++|++.+++++.+++++
T Consensus 400 -~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 429 (445)
T PRK08593 400 -GNVLRFQPPLVITYEQLDTALNTIEQAFTA 429 (445)
T ss_pred -CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 3579998875 6999999999999998865
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=145.51 Aligned_cols=293 Identities=13% Similarity=0.112 Sum_probs=177.3
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRSTD 75 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~~ 75 (334)
+.+.+++++++++|+..++..... ...+|+....+|.+......-..|. .+..+|.++..
T Consensus 111 ~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~ 190 (460)
T PRK06541 111 DLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFY 190 (460)
T ss_pred CcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccc
Confidence 346899999999999988775421 2467888887777654322202221 12233321100
Q ss_pred C---cccc--------HHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCC-HHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 76 N---FAFS--------ITALDQAFNQARKRGVKVRGILICNP-ANPVGNIIP-RETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 76 ~---~~~~--------~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
. +..+ ++.+++.++.. +.+..+.+++.| +++.|.+.+ .+.++++.++|++||+++|+||++.+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGf 267 (460)
T PRK06541 191 RAPELGDDPEAFGRWAADRIEEAIEFE---GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAF 267 (460)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHhc---CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 0 1112 34566665431 123344566667 889999875 778999999999999999999999766
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCc-eEEEEeecCHHHHHHHHHh------hcccCCChHHHHHHH
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF-RTGVIYSYNESVLAAAKKL------TRFCSISAPTQRLLI 215 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~-r~g~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 215 (334)
...|..+. .... +..++ +.+++|.++ .|+ ++|++++ ++++.+.+... ...++.+++...++.
T Consensus 268 GR~G~~~a-~~~~----gv~PD----ivt~gK~l~-~G~~pigav~~-~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaal 336 (460)
T PRK06541 268 GRLGEMFG-CERF----GYVPD----IITCAKGIT-SGYSPLGAMIA-SDRLFEPFLDGPTMFLHGYTFGGHPVSAAVAL 336 (460)
T ss_pred CcCchhhh-hhhc----CCCCC----EEEeccccc-CCccceeEEEE-cHHHHHHhhcCCCccccCCCCCCCHHHHHHHH
Confidence 43333221 1111 11122 235899998 886 9999998 78887777532 124456677766666
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc--CCCceeEEeeecCCcCCCC----Ch---h-hHHHHHHH
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCS--ESSAGLYCWADMSGLIPSY----SE---K-GELELWDK 284 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~--~~~~g~~~~~~~~~~~~~~----~~---~-~~~~~~~~ 284 (334)
+.++..+ + ....++++++.+++.+.|+++ ...+. ....|.+..+++....... .. . ....+...
T Consensus 337 a~l~~l~--~---~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (460)
T PRK06541 337 ANLDIFE--R---EGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPA 411 (460)
T ss_pred HHHHHHH--h---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHH
Confidence 6654321 1 234566777778888888765 22221 1123555556664321100 00 0 11234556
Q ss_pred HHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 285 LLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 285 ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++ ++||.+.+.. . ..+.+|++... ++++|++++++++.+++++
T Consensus 412 l~-~~Gi~~~~~~-~---g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 412 LF-EAGLYCRADD-R---GDPVVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred HH-hCCeEEEecC-C---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 44 5899997632 1 24679999874 6999999999999999865
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=148.14 Aligned_cols=280 Identities=14% Similarity=0.083 Sum_probs=176.9
Q ss_pred hhhhcCCCCCCCC-cEEEe-cCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhc--cCcEEEEEeCCCCCCccccH
Q 019899 6 SQVLGQAVSFDPS-QIVLT-AGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR--TGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 6 ~~~~~~~~~~~~~-~i~~~-~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~--~g~~v~~v~~~~~~~~~~~~ 81 (334)
++.+...++++++ +|+++ .++|.+++.++.++..+ +.+++..-.|..-....... .+.++..+++. .+..++.
T Consensus 47 r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ 123 (361)
T TIGR01366 47 REGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTAD--PGSAPEP 123 (361)
T ss_pred HHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccCCceEEecC--CCCCCCC
Confidence 4445555666444 78886 55999999999998743 34444455555433332212 12366666653 2333332
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
.+. .++++|.+++..|.||...| +++| ++++|+++++|.+.+. +....++.
T Consensus 124 -----~~~------~~~~lV~~~h~et~tG~~~p---i~~I---~~~~g~~~iVDavqs~----g~~~idv~-------- 174 (361)
T TIGR01366 124 -----QAD------PGVDVIAWAHNETSTGVAVP---VRRP---EGSDDALVVIDATSGA----GGLPVDIA-------- 174 (361)
T ss_pred -----ccC------CCCCEEEEcccCCccceecc---cccc---cccCCCeEEEEcCccc----cCCCCCHH--------
Confidence 222 37999999999999999999 5555 4789999999999875 33334443
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-----------------------cccCCChHHHHHHHHhh
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-----------------------RFCSISAPTQRLLISML 218 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l 218 (334)
..+++++|.+|.+|.+| .++.++. +++..++++... .+++.+.....++.+++
T Consensus 175 --~~D~~~~s~~K~lg~~~-Gl~~~~~-s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al 250 (361)
T TIGR01366 175 --ETDVYYFAPQKNFASDG-GLWLAIM-SPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQI 250 (361)
T ss_pred --HCCEEEEEchhhcCCCC-ceEEEEE-CHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHH
Confidence 23578899999998664 3666666 666665554210 01222223333444444
Q ss_pred CChHHHHHH--HHHHHHHHHHHHHHHHHHHHhCC-CcccCC-C---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe
Q 019899 219 SDTKFIQEY--LETNKRRIKKLYDSFVAGLKQLG-IRCSES-S---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI 291 (334)
Q Consensus 219 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~-~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi 291 (334)
+. +.+. ++...++.++..+++.+.+.+.+ ++.... . ......+.+++.. +..++...| +++||
T Consensus 251 ~~---l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~------~~~~v~~~L-~~~gI 320 (361)
T TIGR01366 251 DW---MNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDI------DAATVAKIL-RANGI 320 (361)
T ss_pred HH---HHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCcc------CHHHHHHHH-HHCCC
Confidence 32 2322 56677888899999999999986 444421 1 1111223444322 345677774 66899
Q ss_pred EEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 292 NVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 292 ~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.++... ..+..+|+|+.. .|++|++++++.|+++++++
T Consensus 321 ~i~~~~~~--l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 321 VDTEPYRK--LGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred eeccCccc--cCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 99776422 235689999885 69999999999999998764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-16 Score=142.87 Aligned_cols=293 Identities=14% Similarity=0.111 Sum_probs=175.2
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC-------------cEEEEEeCCCCCC--cc-
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG-------------VELIPVHCRSTDN--FA- 78 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~~v~~~~~~~--~~- 78 (334)
.+.+++++++++|+..++.... ....+|+....+|.+......-..+ ..+..++.++... ++
T Consensus 115 ~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (441)
T PRK05769 115 EKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGI 194 (441)
T ss_pred CCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccC
Confidence 3689999999999999887542 2346788888878765432210211 1123333311100 00
Q ss_pred c--------cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc
Q 019899 79 F--------SITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF 149 (334)
Q Consensus 79 ~--------~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~ 149 (334)
- +++.+++.+-+......++.+|++.......|.+. +.+.++++.++|++||+++|+||++.++...|..+
T Consensus 195 ~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~ 274 (441)
T PRK05769 195 ENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF 274 (441)
T ss_pred CchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccccee
Confidence 0 12234442211101123566555554466778765 56679999999999999999999998765545322
Q ss_pred chhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH-HhhcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 150 VSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK-KLTRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
. .... +..++ + .+++|.++ .|+++|++++ ++++.+.+. .+...++.+++.+.++.+.++.. ++
T Consensus 275 a-~~~~----gv~pD--i--vt~~K~l~-~G~p~gav~~-~~~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l---~~-- 338 (441)
T PRK05769 275 A-IEHF----GVEPD--I--ITLAKAIA-GGLPLGAVIG-RAELMFLPPGSHANTFGGNPVAAAAALATLEEL---EE-- 338 (441)
T ss_pred h-hhcc----CCCCC--E--EEEccccc-CCcccEEEEE-ehhhhhcCCCCCCCCCCcCHHHHHHHHHHHHHH---HH--
Confidence 1 1111 11122 2 25899998 8899999998 677764332 13345566888877777776542 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC--Cccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLG--IRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g--~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
...++++++.+++.+.|++.. ..+. ...-|.++.+.+..............+...++ ++||.+.+.. .
T Consensus 339 -~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~Gil~~~~~------~ 410 (441)
T PRK05769 339 -GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAF-KRGLLLLGAG------K 410 (441)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHH-hCCcEEecCC------C
Confidence 445566666777777776542 2222 12235556566643211111122345666644 4899986532 3
Q ss_pred CeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 305 GWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 305 ~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.+|++.+. ++++|++++++++.+++++.
T Consensus 411 ~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 411 SAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 679999874 59999999999999998753
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-16 Score=143.93 Aligned_cols=299 Identities=16% Similarity=0.119 Sum_probs=186.2
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--C--C-CCeEEecCCCCCChhhhhhhccCcEEEE---EeCCCCCCc-
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--D--H-GNALLVPSPYYPGFDRDIRFRTGVELIP---VHCRSTDNF- 77 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~--~-gd~vl~~~p~~~~~~~~~~~~~g~~v~~---v~~~~~~~~- 77 (334)
+++....+.+.+.+++++++++|+..++.... . + ..+|+....+|.+......-..+..... .|..+ +-.
T Consensus 131 e~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~-~~~~ 209 (459)
T PRK11522 131 KTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLP-GFRH 209 (459)
T ss_pred HHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCC-CCcc
Confidence 33333333344689999999999999987642 1 2 3468888888877544322022221111 11100 000
Q ss_pred --cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 78 --AFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 78 --~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
-.|.+++++.++.....+.++.++++...+...|.+. |.+.++++.++|++||+++|+||++.++...|..+. ...
T Consensus 210 ~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a-~e~ 288 (459)
T PRK11522 210 VPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFA-CEH 288 (459)
T ss_pred cCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhh-hhc
Confidence 1267888888875433344566666655577778865 566799999999999999999999977544443211 111
Q ss_pred hhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH----hhcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK----LTRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
. +..+| +.+++|.+| .| +++|.+++ .+++.+.+.. +...++.|+.+..++.+.++..+ + +
T Consensus 289 ~----gv~PD----ivt~gK~lg-gG~~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~---~--~ 353 (459)
T PRK11522 289 E----NVQPD----ILCLAKALG-GGVMPIGATIA-TEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLL---E--Q 353 (459)
T ss_pred c----CCCCC----EEEechhhh-CCCccceeEEE-cHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHh---c--c
Confidence 1 11122 337899998 78 68999998 7787776632 23445668888777777765432 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHhC--CCc-cc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQL--GIR-CS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~--g~~-~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
...++++++-+++.+.|+++ ... .. ....|.++.+.+... .....+...+++ +||.+.+... ..
T Consensus 354 ~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~------~~~~~i~~~l~~-~Gvl~~~~~~----~~ 422 (459)
T PRK11522 354 NLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN------EIGYNFASEMFR-QRVLVAGTLN----NA 422 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc------hHHHHHHHHHHH-CCeEEEecCC----CC
Confidence 34456666667777777664 122 11 112356666777542 123467777555 8999875321 24
Q ss_pred CeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 305 GWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 305 ~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.+|+.++. ++++|+++++++|.+++++.
T Consensus 423 ~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~ 452 (459)
T PRK11522 423 KTIRIEPPLTLTIEQCEQVLKAARKALAAM 452 (459)
T ss_pred CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 689999874 69999999999999988653
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=153.08 Aligned_cols=220 Identities=14% Similarity=0.200 Sum_probs=137.3
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc----cccH-----HHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF----AFSI-----TALDQA 87 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~----~~~~-----~~l~~~ 87 (334)
....++++|+|.++.+++.+++++||+|+++..||.+...++. +.|+.+++++.. .+.+ .++. +.++++
T Consensus 82 d~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~ali-l~ga~Pvyi~p~-~~~~gi~~~i~~~~~~~~~i~~~ 159 (417)
T PF01276_consen 82 DKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALI-LSGAIPVYIPPE-DNEYGIIGGISPDEFNEEDIEEA 159 (417)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHH-HHTEEEEEEEEE-E-TTS-BEEB-GGGGSHHHHHHH
T ss_pred CeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHH-HcCCeEEEecCC-ccccCCccCCChhhhhHHHHHHH
Confidence 3468889999999999999999999999999999999999998 999999999864 2332 3466 899999
Q ss_pred HHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcE
Q 019899 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRV 166 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 166 (334)
|++.... +.++++++++|+. .|++++ +++|+++|++++++|++||||+... |. .-+.+...+..+ ..+...+
T Consensus 160 l~~~p~~-k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~-~lp~~a~~~gad-~~~~~~~ 232 (417)
T PF01276_consen 160 LKEHPDA-KAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHFGFH-PLPRSALALGAD-RPNDPGI 232 (417)
T ss_dssp HHHCTTC-HCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGCS-GGGTTCSSTTSS--CTSBEE
T ss_pred HHhCccc-cCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccccccCC-CCccchhhccCc-cccccce
Confidence 9874211 1255699999976 699999 9999999999999999999998632 21 111111112111 1123455
Q ss_pred EEEecccccCCCCCce-EEEEeecCHH--HHHHHHHhhcccCCChHHHHHHHHhhCChHHH-HHHHHHHHHHHHHHHHHH
Q 019899 167 HIIYGLSKDLSLPGFR-TGVIYSYNES--VLAAAKKLTRFCSISAPTQRLLISMLSDTKFI-QEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 167 ~~~~s~sK~~~~~g~r-~g~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (334)
+++.|.+|.+ +++. .+++...+.. -.+++++.-..+..++++-..++.+-....++ ...-.++.++..++.+.+
T Consensus 233 ~vvqS~HKtL--~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~ 310 (417)
T PF01276_consen 233 IVVQSTHKTL--PALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEF 310 (417)
T ss_dssp EEEEEHHHHS--SS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred eeeechhhcc--cccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 8999999999 3333 3455543332 24555554333333333322222222122223 233345556666777777
Q ss_pred HHHHH
Q 019899 243 VAGLK 247 (334)
Q Consensus 243 ~~~l~ 247 (334)
++.++
T Consensus 311 R~~i~ 315 (417)
T PF01276_consen 311 RKKIN 315 (417)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77773
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-16 Score=142.59 Aligned_cols=296 Identities=11% Similarity=0.018 Sum_probs=178.3
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc------C--CCCeEEecCCCCCChhhhhhhccC------------cEEEEEeCC
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA------D--HGNALLVPSPYYPGFDRDIRFRTG------------VELIPVHCR 72 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~------~--~gd~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~~~ 72 (334)
.+.+.+.+++++++++|+..++.... . ...+|+....+|.+......-..| ..+..++.+
T Consensus 107 ~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p 186 (461)
T PRK07482 107 APAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAP 186 (461)
T ss_pred CCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCC
Confidence 33345789999999999999987652 1 235788888888774322110111 112222221
Q ss_pred CCCCc-----------cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEecccc
Q 019899 73 STDNF-----------AFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYG 140 (334)
Q Consensus 73 ~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~ 140 (334)
+.... ..+++.+++.+... ...++.+|++...+...|.+. +.+.+++|.++|++||+++|.||++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~t 264 (461)
T PRK07482 187 HYYRRADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVT 264 (461)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc
Confidence 10000 01356666666421 123566565554476778774 66689999999999999999999999
Q ss_pred ccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCc-eEEEEeecCHHHHHHHHH---------hhcccCCChHH
Q 019899 141 GSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF-RTGVIYSYNESVLAAAKK---------LTRFCSISAPT 210 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~-r~g~i~~~~~~~~~~~~~---------~~~~~~~~~~~ 210 (334)
+|...|..+..- .. +..--+.+++|.++ .|. ++|.+++ ++++.+.+.. +..+++.|+++
T Consensus 265 GfGRtG~~~a~~-~~--------gv~PDiv~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~ 333 (461)
T PRK07482 265 GFGRLGSMFGSD-HY--------GIEPDLITVAKGLT-SAYAPLSGSIV-GEKVWDVLEQGSDEHGAIGHGWTYSGHPIC 333 (461)
T ss_pred CCCcCcchhhHH-hc--------CCCCCEEEEccccc-cCccccceeee-cHHHHHHHhcccccCCccccCCCCCcCHHH
Confidence 876555433221 11 11112234789998 785 8999998 7888777752 23456778888
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccCCCceeEEeeecCCcCCCCCh-----hhHHHH
Q 019899 211 QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPSYSE-----KGELEL 281 (334)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~ 281 (334)
..++.+.++..+ + ....++.+++-+++.+.|++ +++......-|.+..+++......... .....+
T Consensus 334 ~Aaa~a~L~~~~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i 408 (461)
T PRK07482 334 AAAALANLDILE--R---ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQV 408 (461)
T ss_pred HHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHH
Confidence 888777775432 1 12334445555566666644 333222223456666777532111000 112356
Q ss_pred HHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 282 WDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 282 ~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
...++ ++||.+.++. ..+.+|+..+. ++++|++++++++.+++++
T Consensus 409 ~~~~~-~~Gvl~~~~~-----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 454 (461)
T PRK07482 409 SAAAL-ERGVIARAMP-----HGDILGFAPPLVLTRAEADEIVAIAKDAVDE 454 (461)
T ss_pred HHHHH-HCCcEEecCC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 66644 5899986532 13568887663 6999999999999998865
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.9e-16 Score=140.14 Aligned_cols=299 Identities=11% Similarity=0.044 Sum_probs=174.9
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC-------------cEEEEEeCCCCCC-
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG-------------VELIPVHCRSTDN- 76 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~~v~~~~~~~- 76 (334)
.+...+.+++++++++|+..++.... ....+|+....+|.+......-..+ ..++.+|.++...
T Consensus 109 ~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 188 (457)
T PRK05639 109 SPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRN 188 (457)
T ss_pred CCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccc
Confidence 33334689999999999999887652 3445788888777764432110111 1234444321110
Q ss_pred -cc----ccHH--------HHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 77 -FA----FSIT--------ALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 77 -~~----~~~~--------~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
+. -+.+ .+++.+.......+++.+|++...+...|.+. +.+.++++.++|++||+++|+||++.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~ 268 (457)
T PRK05639 189 PWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGI 268 (457)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcc
Confidence 00 0222 23333321111234667666654477778755 5677999999999999999999999875
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH-HhhcccCCChHHHHHHHHhhCCh
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK-KLTRFCSISAPTQRLLISMLSDT 221 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 221 (334)
...|..+.. ... +..+| + .+++|.++ .|+++|.+++ ++++.+... .....++.++....++.+.++..
T Consensus 269 GrtG~~~a~-~~~----gv~PD--i--v~~gK~l~-gG~pi~av~~-~~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l 337 (457)
T PRK05639 269 GRTGKWFAS-EWF----EVKPD--L--IIFGKGVA-SGMGLSGVIG-RKELMDLTSGSALLTPAANPVISAAAEATLEII 337 (457)
T ss_pred CcCchHHHH-Hhc----CCCCC--E--EEechhhc-CCCcceeEEe-hHHHHhhcCCCcccCCCcCHHHHHHHHHHHHHH
Confidence 444432211 111 11122 2 23899998 7899999998 788877321 12234556777776666666432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 222 KFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
+ + ....++.+++-+++.+.|+++ ++......-|.++.+.+..............+...++ ++|+.+.+..
T Consensus 338 ~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~g 411 (457)
T PRK05639 338 E--E---ENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAF-ELGLILPSYG 411 (457)
T ss_pred H--H---ccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHH-hCCeEEeecC
Confidence 2 1 123344455556666666552 3222222335555566533211111222345666644 4899987642
Q ss_pred CcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 298 ACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 298 ~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
. .++.+|+.... ++++|+++++++|.+++++
T Consensus 412 ~----~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~ 443 (457)
T PRK05639 412 M----FGNVIRITPPLVITKEIAEKGLEIMERAIKD 443 (457)
T ss_pred C----CCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 1 24689999875 6999999999999999865
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=147.30 Aligned_cols=161 Identities=12% Similarity=0.154 Sum_probs=114.3
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh-hhhccCcEEEEEeCCCCCCcc----ccH-----HHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD-IRFRTGVELIPVHCRSTDNFA----FSI-----TALDQ 86 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~-~~~~~g~~v~~v~~~~~~~~~----~~~-----~~l~~ 86 (334)
...-+++||+|.++.+++.+++.+||+||++..||.+.... +. +.|+.++++.... +.++ ++. +.+++
T Consensus 190 d~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLi-LsGa~PVYl~P~~-n~~Gi~g~I~~~~~~~~~i~~ 267 (720)
T PRK13578 190 DKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALI-QAGATPVYLETAR-NPFGFIGGIDAHCFDEEYLRE 267 (720)
T ss_pred CceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH-HcCCeEEEeeccc-cccCCcCCCChHHccHHHHHH
Confidence 35789999999999999999999999999999999999986 77 8999999988543 2233 354 44888
Q ss_pred HHHHHH-H---cCCceeEEEEeCCCCCcccCCCHHHHHHHHHH-HHhcCcEEEEeccccccc-cCCCCcchhhhhhhccc
Q 019899 87 AFNQAR-K---RGVKVRGILICNPANPVGNIIPRETLYELLDF-AREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEE 160 (334)
Q Consensus 87 ~l~~~~-~---~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~-~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~ 160 (334)
+|++.. . ...+.+++++++|+. .|++++ +++|+++ ++.++ +|++||||+... |. +....+....-+.+
T Consensus 268 ~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~llvDEAhgah~~F~-p~~~~~p~~al~~G 341 (720)
T PRK13578 268 QIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YILFDSAWVGYEQFI-PMMADCSPLLLELN 341 (720)
T ss_pred HHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEEEeCcchhhhccC-cccccCChhhhhcC
Confidence 887641 1 112258999999975 699999 8888888 67778 999999998743 32 11111111111111
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEe
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIY 187 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~ 187 (334)
-+...++++.|.||.+ +++..+..+
T Consensus 342 aD~p~i~v~QStHKtL--~alTQaS~L 366 (720)
T PRK13578 342 ENDPGIFVTQSVHKQQ--AGFSQTSQI 366 (720)
T ss_pred CCCCCeEEEEChhhcc--hhhhhHhhh
Confidence 1234458889999998 455555544
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-16 Score=141.08 Aligned_cols=301 Identities=15% Similarity=0.117 Sum_probs=181.6
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc------C-C-CCeEEecCCCCCChhhh-hhhccCc------------
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA------D-H-GNALLVPSPYYPGFDRD-IRFRTGV------------ 64 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~------~-~-gd~vl~~~p~~~~~~~~-~~~~~g~------------ 64 (334)
.+++.+..+.+.+.+++++++++|+..++.... . + ..+|+....+|.+.... .. ..+.
T Consensus 96 ae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s-~t~~~~~~~~~~~~~~ 174 (459)
T PRK05965 96 AAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAG-LTALPAFHRGFDLPLP 174 (459)
T ss_pred HHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHH-hcCCchhhcccCCCCC
Confidence 333433343345689999999999999987542 1 1 35788888888775421 11 1111
Q ss_pred EEEEEeCCCCC--Ccccc--------HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEE
Q 019899 65 ELIPVHCRSTD--NFAFS--------ITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHV 133 (334)
Q Consensus 65 ~v~~v~~~~~~--~~~~~--------~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~v 133 (334)
.+..++.+... .+..| ++.+++.++.. ...++.+|++...+...|.+. |.+.++++.++|++||+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gill 252 (459)
T PRK05965 175 WQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILF 252 (459)
T ss_pred CCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 12233321111 01112 24566666532 113567666665577778755 6667999999999999999
Q ss_pred EEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH---------hhcc
Q 019899 134 ISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK---------LTRF 203 (334)
Q Consensus 134 i~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~---------~~~~ 203 (334)
|.||++.+|...|..+. ... .+..--+.+++|.++ .| +++|.+++ ++++.+.+.. +..+
T Consensus 253 I~DEV~tGfGRtG~~~a-~~~--------~gv~PDiv~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T 321 (459)
T PRK05965 253 VADEVITGFGRTGPLFA-CEA--------EGVVPDLMTVAKGLT-SGYVPMGAVLM-SDHVYQGIADGAGAAAPVGHGYT 321 (459)
T ss_pred EEechhccCccCchhhh-Hhh--------cCCCCCeEEechhhc-cCCcceeEEEE-cHHHHHHHhccccccccccccCC
Confidence 99999998765554321 111 111122335789998 88 59999998 8888877752 2345
Q ss_pred cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cccc--CCCceeEEeeecCCcCCCCC-----h
Q 019899 204 CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IRCS--ESSAGLYCWADMSGLIPSYS-----E 275 (334)
Q Consensus 204 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~--~~~~g~~~~~~~~~~~~~~~-----~ 275 (334)
++.++.+..++.+.++..+ + +...++.+++-+++.+.|+++. .... ...-|+++.+++........ .
T Consensus 322 ~~gnpl~~Aaa~a~L~~l~--~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~ 396 (459)
T PRK05965 322 YSAHPVSAAVGLEVLRLYH--E---GGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAAL 396 (459)
T ss_pred CCCCHHHHHHHHHHHHHHH--h---ccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchh
Confidence 6778888887777765332 1 2234455566666666666541 1111 12235555566643211100 0
Q ss_pred hhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 276 KGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 276 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.....+... +.++||.+.+.. .+.+|+..+- +++++++++++++.+++++
T Consensus 397 ~~~~~i~~~-~~~~Gll~~~~g------~~~i~~~PpL~it~~ei~~~~~~l~~~l~~ 447 (459)
T PRK05965 397 DPADRIFDR-AYANGLVFRAFG------DGVLGFAPALCCTEGEFDLIFERTRKTLDD 447 (459)
T ss_pred HHHHHHHHH-HHhCCeEEEecC------CcEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 123345666 445899987521 3578998664 6999999999999999875
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-16 Score=140.16 Aligned_cols=291 Identities=19% Similarity=0.229 Sum_probs=181.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCCh------hhhhhhccCcEEEEEeCCCCCCcc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF------DRDIRFRTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~------~~~~~~~~g~~v~~v~~~~~~~~~ 78 (334)
+++.+++.++ .++.+++++++.|+..++.++ .+||+|+++...+..+ ...+. ..|++++.++.. + .
T Consensus 132 ~e~~lA~l~G--ae~a~vv~sgtaAl~l~l~~l-~~GdeVIvs~~e~~~~ggs~~i~~~~~-~~G~~l~~v~~~--~--~ 203 (464)
T PRK04311 132 LAALLCALTG--AEDALVVNNNAAAVLLALNAL-AAGKEVIVSRGELVEIGGAFRIPDVMR-QAGARLVEVGTT--N--R 203 (464)
T ss_pred HHHHHHHHhC--CCeEEEECCHHHHHHHHHHHh-CCCCEEEEcchhhhhcCcchhhHHHHH-HCCcEEEEECCC--C--C
Confidence 4455555444 457888999999999888664 7999999998654422 22345 689999999852 2 3
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCC--cc--cCCCHHHHHHHHHHHHhcCcEEEEeccccccc----cCCCCcc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANP--VG--NIIPRETLYELLDFAREKNIHVISDEIYGGSI----FGNEEFV 150 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~np--tG--~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~----~~~~~~~ 150 (334)
.+++++++++++ +++++++++++|| +| ...| +++|+++|++||+++++|...+.+. ++-....
T Consensus 204 t~~~dle~aI~~------~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p 274 (464)
T PRK04311 204 THLRDYEQAINE------NTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEP 274 (464)
T ss_pred CCHHHHHHhcCc------cCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCC
Confidence 568999999986 7999999999997 34 4567 9999999999999999999643321 1100111
Q ss_pred hhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhC----ChH-H
Q 019899 151 SMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLS----DTK-F 223 (334)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~----~~~-~ 223 (334)
.+..... .+.+++++|.+|++|.+ ..|++++ ++++++.+++. .......-....++..++. ..+ +
T Consensus 275 ~~~~~l~-----~GaDiv~fSg~K~LgGp--~~G~i~g-~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~ 346 (464)
T PRK04311 275 TVQELLA-----AGVDLVTFSGDKLLGGP--QAGIIVG-KKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLA 346 (464)
T ss_pred chhhHHh-----cCCcEEEecCcccccCC--ceEEEEE-cHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhh
Confidence 2233222 67889999999998634 4788888 78888877642 2222233333333333332 111 0
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHhCC---C--cccCC----Cce------e-EEeeecCCcCCCCChhhHHHHHH
Q 019899 224 I----QEYLETNKRRIKKLYDSFVAGLKQLG---I--RCSES----SAG------L-YCWADMSGLIPSYSEKGELELWD 283 (334)
Q Consensus 224 ~----~~~~~~~~~~~~~~~~~~~~~l~~~g---~--~~~~~----~~g------~-~~~~~~~~~~~~~~~~~~~~~~~ 283 (334)
. ...+....+++.++++.+.+.|+... + ++... .+| + ..-+.+... .....++..
T Consensus 347 ~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~-----~~~~~~l~~ 421 (464)
T PRK04311 347 EEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPK-----DRSLEALAA 421 (464)
T ss_pred hhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCC-----CCCHHHHHH
Confidence 0 01133344667778888888887652 2 22211 011 0 111222211 123456666
Q ss_pred HHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 284 KLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 284 ~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
. |++....|... ..++.+.+.+-.+.++|++.++++|++++.
T Consensus 422 ~-lr~~~~~i~~r-----~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 422 R-LRLLPPPVIGR-----IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred H-HhcCCCCEEEE-----EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 6 56544333321 235677788776789999999999998864
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-17 Score=134.52 Aligned_cols=282 Identities=17% Similarity=0.274 Sum_probs=204.6
Q ss_pred cEEEec--CcHHHHHHHHH--HhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 19 QIVLTA--GATPAVEILCF--CLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 19 ~i~~~~--g~~~~~~~~~~--~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
+|+.+. ++|.++-+... ...-++..|.+|+|+|.++...++ ..|..+..+...+....++|.+.+.+.+.+.
T Consensus 120 Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~-~ag~~~~~yrYyd~~t~gld~~g~ledl~~~--- 195 (427)
T KOG1411|consen 120 RIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFK-DAGLPVKFYRYYDPKTRGLDFKGMLEDLGEA--- 195 (427)
T ss_pred ceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCcccc-ccCcceeeeeeccccccccchHHHHHHHhcC---
Confidence 444443 45656544433 333467789999999999999999 9999998888766677788988877777653
Q ss_pred CCceeEEEEeCC--CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC--CcchhhhhhhccccCCCcEEEEe
Q 019899 95 GVKVRGILICNP--ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE--EFVSMAEILEAEEVDKDRVHIIY 170 (334)
Q Consensus 95 ~~~~~~i~~~~p--~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 170 (334)
....+++.+. +||||.--+.+++++|.++.++.+.+-+.|-+|++|.-+.- ....+.-+.. +...++++-
T Consensus 196 --p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~----~g~~~~laQ 269 (427)
T KOG1411|consen 196 --PEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVE----DGHEILLAQ 269 (427)
T ss_pred --CCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHH----cCCceEeeh
Confidence 3444555555 99999999999999999999999999999999999775421 1223333333 267778889
Q ss_pred cccccCCCCCceEEEE--eecCHHHHHHHHHh----hcc-c-CCChHHHHHHHHhhCChHHHHHH---HHHHHHHHHHHH
Q 019899 171 GLSKDLSLPGFRTGVI--YSYNESVLAAAKKL----TRF-C-SISAPTQRLLISMLSDTKFIQEY---LETNKRRIKKLY 239 (334)
Q Consensus 171 s~sK~~~~~g~r~g~i--~~~~~~~~~~~~~~----~~~-~-~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~ 239 (334)
|+.|-+|+.|-|+|.+ +|.+.+...+++.. ..+ + +++......+...+.+.+.-.+| ..-+.+++..++
T Consensus 270 SyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR 349 (427)
T KOG1411|consen 270 SYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMR 349 (427)
T ss_pred hhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999985 66677766666543 222 3 44445667777788776544444 356788888999
Q ss_pred HHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 240 DSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 240 ~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+.+.+.|+..| |......-|||++-.+. .+-.+.|.+++-|++.- + -|||++.++
T Consensus 350 ~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~-----------peQv~~l~ke~~iYmT~--------d--GRiS~aG~s 408 (427)
T KOG1411|consen 350 QQLFDALEKEGSPGNWSHITKQIGMFCFTGLN-----------PEQVDWLTKEYHIYLTK--------D--GRISMAGLS 408 (427)
T ss_pred HHHhHHhhcCCCCccHHHHHHhhheeeecCCC-----------HHHHHHHHhhheeeecc--------C--ceEeecccc
Confidence 99999998864 33345567888865554 37788888999888752 2 389998788
Q ss_pred cccHHHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKVAE 331 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~ 331 (334)
...+..+.+++-++.+
T Consensus 409 s~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 409 SSNVPYLADAIHAVTK 424 (427)
T ss_pred ccCCcccchhhHhHhc
Confidence 8888888887776654
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=134.01 Aligned_cols=286 Identities=15% Similarity=0.103 Sum_probs=203.2
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
.+...+.++..-|+...+..|. -||..|+.+...|.+....++ ..+++-+-+. +.|++.|++.++...
T Consensus 231 K~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIr-ns~v~K~IFr-------HND~~hL~~lL~~~~-- 300 (570)
T KOG1360|consen 231 KEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIR-NSRVPKHIFR-------HNDLDHLEQLLQSSP-- 300 (570)
T ss_pred CcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhh-hcCCcceeec-------cCCHHHHHHHHHhCC--
Confidence 4455555666667766666662 489999999999999999998 7776544444 458999999988642
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
...+|.|.....+..+|.+-| +++|++++++||.+-++||++.-..|+..+ ....+- .+....-++..+++.|
T Consensus 301 ~svPKivAFEtVhSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~rG-aGvger---dGvm~kvDiIsGTLgK 373 (570)
T KOG1360|consen 301 KSVPKIVAFETVHSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRG-AGVGER---DGVMHKVDIISGTLGK 373 (570)
T ss_pred CCCCceEEEeeeeccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCCC-CCcccc---CCcchhhhhcccchhh
Confidence 235788999999999999999 999999999999999999999887775332 122111 1222555677899999
Q ss_pred cCCCCCceEEEEeecCHHHHHHHHHhhcc--cC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 019899 175 DLSLPGFRTGVIYSYNESVLAAAKKLTRF--CS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG 250 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 250 (334)
+||.-| |||.+ ...+++.++.+... |+ .++.....+.++.+-.. .+.-...+++.+++..++++.|.+.|
T Consensus 374 afGcVG---GYIAa-t~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk--~~eg~~lR~~hqrnv~~~kq~l~~~G 447 (570)
T KOG1360|consen 374 AFGCVG---GYIAA-TRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILK--SEEGRVLRRQHQRNVKYVKQLLMELG 447 (570)
T ss_pred hccccc---ceehh-hhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 998676 89987 88999999988655 33 34444444444433211 11124567778888999999999999
Q ss_pred CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCcccHHHHHHHHHH
Q 019899 251 IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 251 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~~~l~~~l~~l~~ 328 (334)
+.+...+... +-+.+.... .+.+..+.|+.+++|++-.-.+.... +...+||.... .|++..+.+++.|..
T Consensus 448 iPVi~~pSHI-iPv~vgda~------l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~ 520 (570)
T KOG1360|consen 448 IPVIPNPSHI-IPVRVGDAA------LAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLD 520 (570)
T ss_pred CcccCCCcce-eeeeccCHH------HHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHH
Confidence 9988776554 334443321 23578899999999998755443222 34678998764 588888888888877
Q ss_pred HHHH
Q 019899 329 VAET 332 (334)
Q Consensus 329 ~~~~ 332 (334)
+-.+
T Consensus 521 vw~~ 524 (570)
T KOG1360|consen 521 VWNE 524 (570)
T ss_pred HHHH
Confidence 6554
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-15 Score=137.99 Aligned_cols=299 Identities=13% Similarity=0.102 Sum_probs=171.4
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-------CCCCe-EEecCCCCCC-hhhhhhhccCcE-----------E
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-------DHGNA-LLVPSPYYPG-FDRDIRFRTGVE-----------L 66 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-------~~gd~-vl~~~p~~~~-~~~~~~~~~g~~-----------v 66 (334)
+++...++...+.+++++++++|+..++.... +++.. |+....+|.+ ....+. ..|.+ +
T Consensus 105 e~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s-~s~~~~~~~~~~~~~~~ 183 (460)
T PRK12403 105 ELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATA-LGGMKFMHEMGGLIPDV 183 (460)
T ss_pred HHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhh-cCCCccccccCCCCCCC
Confidence 33433344334789999999999999988763 22333 4444445554 333333 33322 2
Q ss_pred EEEeCCCC--CCccc--------cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEE
Q 019899 67 IPVHCRST--DNFAF--------SITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVIS 135 (334)
Q Consensus 67 ~~v~~~~~--~~~~~--------~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~ 135 (334)
..+|.+.. ..+.. +++.+++.+.+. ...++.+|++...+...|.+. +.+.++++.++|++||+++|+
T Consensus 184 ~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~ 261 (460)
T PRK12403 184 AHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL--GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCA 261 (460)
T ss_pred EEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 23332110 00011 134455544321 112455555544466778765 566799999999999999999
Q ss_pred eccccccccCCCCcc-hhhhhhhccccCCCcEEEEecccccCCCCCc-eEEEEeecCHHHHHHHHH------hhcccCCC
Q 019899 136 DEIYGGSIFGNEEFV-SMAEILEAEEVDKDRVHIIYGLSKDLSLPGF-RTGVIYSYNESVLAAAKK------LTRFCSIS 207 (334)
Q Consensus 136 D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~-r~g~i~~~~~~~~~~~~~------~~~~~~~~ 207 (334)
||++.+|...|..+. ....+ .+ +++ +++|.++ .|. ++|.+++ ++++.+.+.. +...++.+
T Consensus 262 DEV~tGfGRtG~~~a~e~~gv------~P--Div--~~gK~lg-gG~~Piga~v~-~~~i~~~~~~~~~~~~~~~T~~gn 329 (460)
T PRK12403 262 DEVIGGFGRTGEWFAHEHFGF------EP--DTL--SIAKGLT-SGYVPMGGLVL-SKRIAEALVEQGGVFAHGLTYSGH 329 (460)
T ss_pred eccccCCCcCchhhhhhhcCC------CC--CeE--EEccccc-ccccceEEEEE-CHHHHHHHhcCCCccccCCCCCCC
Confidence 999987655454322 11111 12 222 4899998 784 8999998 7888887753 23345678
Q ss_pred hHHHHHHHHhhCChHHHHHHHHHHHHHHH-HHHHHHHHHHHh----CCCcccCCCceeEEeeecCCcCCCC---Ch--hh
Q 019899 208 APTQRLLISMLSDTKFIQEYLETNKRRIK-KLYDSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPSY---SE--KG 277 (334)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~~~---~~--~~ 277 (334)
+.+..++.+.++..+ + +...++++ ++-+++.+.|++ +++......-|.++.+++....... .. ..
T Consensus 330 Pl~~Aaala~L~~i~---~--~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~ 404 (460)
T PRK12403 330 PVAAAVAIANLKALR---D--EGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDL 404 (460)
T ss_pred HHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHH
Confidence 888887777775432 1 11233443 445555555543 3332222234556666664321110 00 11
Q ss_pred HHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 278 ELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 278 ~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
...+... +.++|+.+.+.. +.+|++... ++++|++++++.+.+++++.
T Consensus 405 ~~~~~~~-~~~~Gll~~~~~-------~~~~l~Ppl~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 405 AWRCRTI-GFEEGVIIRSTL-------GRMIMAPALVAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred HHHHHHH-HHhCCEEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2233344 345899987421 347888774 59999999999999998763
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=139.71 Aligned_cols=280 Identities=14% Similarity=0.181 Sum_probs=171.7
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhc--c-----------Cc------EEEEEeCCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFR--T-----------GV------ELIPVHCRSTD 75 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~--~-----------g~------~v~~v~~~~~~ 75 (334)
.+.+.+++++++|+..++.... ....+|+....+|.+..+.+... . |. ++..+|
T Consensus 155 ~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----- 229 (474)
T PLN02482 155 VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAP----- 229 (474)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEec-----
Confidence 5799999999999999987652 34467888888888754321100 0 10 111122
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIP-RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
..|++.+++.++.. ..++.+|++.......|.+.+ .+.++.+.++|++||+++|+||++.++ ..+.... .+
T Consensus 230 --~nd~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga--~~ 301 (474)
T PLN02482 230 --YNDLEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGA--QE 301 (474)
T ss_pred --CCChHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchH--hH
Confidence 12788898888642 235665555544677787766 567999999999999999999999776 3332211 11
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-----hcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.. +..+| +.+++|.+| .|+++|.+++ ++++.+.+... ...++.+++...+..+.++..+ + .
T Consensus 302 ~~---gv~PD----i~t~gK~lg-gG~Pigav~g-~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~---~--~ 367 (474)
T PLN02482 302 YF---GITPD----LTTLGKVIG-GGLPVGAYGG-RREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQ---Q--P 367 (474)
T ss_pred Hh---CCCCC----EEEecchhh-CCCceEEEEE-cHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHh---c--c
Confidence 11 11122 357899998 8899999987 88998887532 2334567777766666654321 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCccc-CCCceeEEeeecCC-cC-C-----CCChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQL----GIRCS-ESSAGLYCWADMSG-LI-P-----SYSEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~----g~~~~-~~~~g~~~~~~~~~-~~-~-----~~~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
...+++.++-+++.+.|++. ++.+. ....+++- +.+.. +. + .........+...+++ +||.+.|..
T Consensus 368 ~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~g-i~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~~~~~~ 445 (474)
T PLN02482 368 GTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFG-FFFTEGPVYNFADAKKSDTAKFARFHRGMLE-EGVYLAPSQ 445 (474)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEE-EEEecCCccChhhhccCCHHHHHHHHHHHHH-CCeEEeccC
Confidence 34455555666666666553 44433 23345432 23321 11 0 0111122356667555 899998743
Q ss_pred CcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 298 ACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 298 ~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
. . .+. +++. +|++||+++++++.+++++
T Consensus 446 ~-~----~~~-psl~-ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 446 F-E----AGF-TSLA-HTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred C-C----CCc-CCCC-CCHHHHHHHHHHHHHHHHh
Confidence 2 1 111 3444 7999999999999999875
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=144.24 Aligned_cols=247 Identities=17% Similarity=0.176 Sum_probs=171.7
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC-----C---C------CeEEecCCCCCChhhhhhhccCcEEE
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD-----H---G------NALLVPSPYYPGFDRDIRFRTGVELI 67 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~-----~---g------d~vl~~~p~~~~~~~~~~~~~g~~v~ 67 (334)
.+|+.+.++ .+ ....=.+|+|+|+++...+.+... . + -+|+++.-.|.++...+. .+|.+..
T Consensus 107 v~~l~~l~~--~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~-~lG~~~~ 182 (460)
T COG0076 107 VNMLSDLLG--AP-EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAAR-YLGLGLR 182 (460)
T ss_pred HHHHHHHhC--CC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHH-HhCCCce
Confidence 345666555 22 334578999999999887766421 1 1 169999999999999999 9999999
Q ss_pred EEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC--
Q 019899 68 PVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG-- 145 (334)
Q Consensus 68 ~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~-- 145 (334)
.+++... +..+|++++++++++....| +|+.+.+++++|.+-| +++|.++|+++++|++||.||+++...
T Consensus 183 ~v~~~~~-~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDd---i~~ia~ia~~~~i~lHVDAA~GG~~~pf~ 254 (460)
T COG0076 183 RVPTVPT-DYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDD---IEELADIAEEYGIWLHVDAAFGGFLLPFL 254 (460)
T ss_pred eEEeccC-ccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCC---HHHHHHHHHHcCCcEEEEccccceeeccc
Confidence 9998644 78999999999999852221 3888888999999999 999999999999999999999987642
Q ss_pred CCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHH-HHHHHHHhhcccC----------CChHHHHHH
Q 019899 146 NEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES-VLAAAKKLTRFCS----------ISAPTQRLL 214 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~ 214 (334)
.....-...+ ..-+-+..++||.. +..+.+||++.++++ +.+.+.....++. .+.++-.++
T Consensus 255 ~~~~~~~f~l-------~~vdSIt~d~HK~g-~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~ 326 (460)
T COG0076 255 EPDGRWDFGL-------EGVDSITVDGHKYG-LAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQAL 326 (460)
T ss_pred CccchhhcCC-------CCceEEEECccccc-CCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHH
Confidence 1111101111 33344556999966 577889999998884 5555442221111 122222333
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCceeEEeeecCC
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IRCSESSAGLYCWADMSG 268 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~g~~~~~~~~~ 268 (334)
..+..-.....+.+.++.++..+.++++.+.|++.+ +++..++....+.++.++
T Consensus 327 ~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 327 ALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred HHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 333322221144557888888899999999999986 888875555556677754
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=138.62 Aligned_cols=291 Identities=12% Similarity=0.070 Sum_probs=180.7
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-------CCCCeEEecCCCCCChhhh-hhhccCc-------------E
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-------DHGNALLVPSPYYPGFDRD-IRFRTGV-------------E 65 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-------~~gd~vl~~~p~~~~~~~~-~~~~~g~-------------~ 65 (334)
+++.+..+.+.+.+++++++++|+..++.... .+..+|+....+|.+.... +. ..+. .
T Consensus 93 ~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s-~~~~~~~~~~~~~~~~~~ 171 (428)
T PRK07986 93 RKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMS-VCDPDNSMHSLYKGYLPE 171 (428)
T ss_pred HHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhc-ccCCchhhhhccCCCCCC
Confidence 33433344345789999999999999887543 2346788888888764322 22 2121 1
Q ss_pred EEEEeCCCCC---Cc-cccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccc
Q 019899 66 LIPVHCRSTD---NF-AFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNI-IPRETLYELLDFAREKNIHVISDEIY 139 (334)
Q Consensus 66 v~~v~~~~~~---~~-~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~ 139 (334)
+..+|..... .+ ..|++++++.++.. +.++.+|++... +...|+. .+.+.+++|.++|++||+++|+||++
T Consensus 172 ~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~ 248 (428)
T PRK07986 172 NLFAPAPQSRFDGEWDERDIAPFARLMAAH---RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA 248 (428)
T ss_pred CEEECCCCcccchhhHHHHHHHHHHHHHhC---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 1223321100 01 23667787777632 235565555542 5556764 45688999999999999999999999
Q ss_pred cccccCCCCcc-hhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH-------hhcccCCChHH
Q 019899 140 GGSIFGNEEFV-SMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK-------LTRFCSISAPT 210 (334)
Q Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~-------~~~~~~~~~~~ 210 (334)
.++...|..+. ....+ .+| ++ +++|.++ .| +.+|.+++ ++++.+.+.. +...++.+++.
T Consensus 249 tG~GrtG~~fa~~~~gv------~PD--i~--t~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~ 316 (428)
T PRK07986 249 TGFGRTGKLFACEHAGI------APD--IL--CLGKALT-GGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLA 316 (428)
T ss_pred cCCccCCCeeeecccCC------CCC--EE--Eechhhh-CCcccCcchhc-hHHHHHHhhcCCCCccccCCCCCcCHHH
Confidence 77644443321 11111 122 22 5899997 78 58999998 8888888864 23445677777
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC--CCceeEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 211 QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE--SSAGLYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
..++.+.++..+ + ....++++++.+++.+.|+++ ...... ..-|++..+.+..+. ....+... +.
T Consensus 317 ~aaa~a~L~~i~---~--~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~------~~~~~~~~-l~ 384 (428)
T PRK07986 317 CAVANASLSLLE---S--GDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPV------NMAALQRF-FV 384 (428)
T ss_pred HHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcc------cHHHHHHH-HH
Confidence 777777765422 1 123555666666677777654 111111 112555556664331 23456667 45
Q ss_pred hcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 288 IAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 288 ~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++|+.+.+. .+.+|+..+- ++++++++++++|.+++++
T Consensus 385 ~~Gl~~~~~-------g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 385 EQGVWIRPF-------GKLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred HCCcEEEec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 589998763 1478998664 6999999999999999865
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=140.15 Aligned_cols=280 Identities=18% Similarity=0.269 Sum_probs=170.1
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCC------CCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADH------GNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~------gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
.|++..|... .+.-.|++++|+|+.+++++.+|... --+|+...|.|+.|..... ........+.=
T Consensus 54 ~LH~~VGNAv-t~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~-~f~s~~y~w~G------ 125 (363)
T PF04864_consen 54 RLHRVVGNAV-TDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTD-FFDSRLYKWAG------ 125 (363)
T ss_dssp HHHHHH-SB---TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCC-CT-BTTEEEEE------
T ss_pred HHHHHhcccc-ccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHH-hccccCccccc------
Confidence 4555666422 23347999999999999999999633 2479999999999988776 44322222221
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
|...+. ++ ....+-.=++++||||.|.+ .+.++ +..+..+|-|-+|. |+. +.++...
T Consensus 126 --da~~~~---~~---~~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYY---WPh--yTpI~~~-- 182 (363)
T PF04864_consen 126 --DASNFK---NS---DNPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYY---WPH--YTPITAP-- 182 (363)
T ss_dssp --ECCCGT---T----S-CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT----STT--TS---S---
T ss_pred --cHHhhc---cC---CCCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeee---ccc--ccccCCC--
Confidence 111111 00 00133335899999999987 33333 45567779999986 332 2333322
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCChH--H-HH----HHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDTK--F-IQ----EYL 228 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--~-~~----~~~ 228 (334)
.+.++.+.|+||.-|.+|.|+||.+.+|+++.+++..+- +..+++--+|.-++.+++..- . .. +.+
T Consensus 183 -----aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F 257 (363)
T PF04864_consen 183 -----ADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIF 257 (363)
T ss_dssp -----B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHH
T ss_pred -----CCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchH
Confidence 466788899999999999999999999999988887653 345677778877777765310 0 01 244
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-Cccc-------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLG-IRCS-------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g-~~~~-------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
.--++.++++-+.|.+.+...+ |.+. ....+-|.|+++....+ .++... |++.||..+
T Consensus 258 ~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed-------~DC~~~-l~~~~I~tr 329 (363)
T PF04864_consen 258 HFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREED-------EDCYAV-LREAKIITR 329 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGG-------SSHHHH-HHCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCccc-------ccHHHH-HHhCCcccC
Confidence 5566777777788888876642 2221 22356689999986422 244444 777999999
Q ss_pred CCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHH
Q 019899 295 PGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329 (334)
Q Consensus 295 ~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~ 329 (334)
.|..||. ++.|+|+|+- .++++++.++++|..+
T Consensus 330 ~G~~fga-~~ryVRlSml-~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 330 SGVLFGA-DSRYVRLSML-KRDDDFDQLLERLSKL 362 (363)
T ss_dssp EGGGGTS--TTEEEEESS-S-HHHHHHHHHHHHCC
T ss_pred CCCccCC-CCCeEEEecc-CCHHHHHHHHHHHHhh
Confidence 9999986 5789999987 7999999999999864
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-15 Score=139.04 Aligned_cols=288 Identities=13% Similarity=0.086 Sum_probs=173.9
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc------C-C-CCeEEecCCCCCChhh-hhhhccCcE------------EEEEeCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA------D-H-GNALLVPSPYYPGFDR-DIRFRTGVE------------LIPVHCRST 74 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~------~-~-gd~vl~~~p~~~~~~~-~~~~~~g~~------------v~~v~~~~~ 74 (334)
+.+.+++++++++|+..++.... . + ..+|+..+.+|.+..- .+. ..|.. +..++.+
T Consensus 150 ~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~s-lsg~~~~~~~~~~~~~~~~~~~~p-- 226 (504)
T PLN02760 150 KMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISAS-LSGLPALHQKFDLPAPFVLHTDCP-- 226 (504)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhh-ccCChhhccCCCCCCCCcEEeCCC--
Confidence 34579999999999999988762 1 2 3567777777766432 222 23321 1122221
Q ss_pred CCcc-------------ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEecccc
Q 019899 75 DNFA-------------FSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYG 140 (334)
Q Consensus 75 ~~~~-------------~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~ 140 (334)
+.+. ...+++++.+.+. ...++.+|++.......|.+. |.+.++++.++|++||+++|+||++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~T 304 (504)
T PLN02760 227 HYWRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVIC 304 (504)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhh
Confidence 1111 1123455555421 112455555444466778765 56679999999999999999999997
Q ss_pred ccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH---------hhcccCCChHH
Q 019899 141 GSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK---------LTRFCSISAPT 210 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~---------~~~~~~~~~~~ 210 (334)
+|...|..+. ... .+...-+.+++|.+| .| +++|.+++ ++++.+.+.. +..+++.++.+
T Consensus 305 GfGRtG~~~a-~e~--------~gv~PDivtlgK~lg-gG~~PigAv~~-~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~ 373 (504)
T PLN02760 305 AFGRLGTMFG-CDK--------YNIKPDLVSLAKALS-SAYMPIGAVLV-SPEISDVIHSQSNKLGSFAHGFTYSGHPVS 373 (504)
T ss_pred CCcccchhhH-HHh--------cCCCCcEEEeccccc-CCccccceEee-cHHHHhhhhcccccccCcccCCCCCCCHHH
Confidence 7654444221 111 111122567899997 66 48999998 7888888753 23356778888
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCceeEEeeecCCcCCCCC-----hhhHHHHH
Q 019899 211 QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSYS-----EKGELELW 282 (334)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~ 282 (334)
..++.+.++..+ + +...++++++.+++.+.|+++ ++......-|.++.+.+........ ......+.
T Consensus 374 ~Aaala~Le~i~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~ 448 (504)
T PLN02760 374 CAVALEALKIYK---E--RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFG 448 (504)
T ss_pred HHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHH
Confidence 888777775432 1 234455666666666666553 2211111224555566643211100 11133466
Q ss_pred HHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 283 DKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 283 ~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.. +.++||.+.+.. +.+|++... ++++|++++++++.+++++
T Consensus 449 ~~-~~~~Gvl~~~~g-------~~lrl~Ppl~it~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 449 AE-CKKRGMLVRVAG-------DNIMMSPPLIITPEEVDELISIYGKALKA 491 (504)
T ss_pred HH-HHhCCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 66 445899987622 468998764 6999999999999998865
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-15 Score=138.59 Aligned_cols=291 Identities=13% Similarity=0.118 Sum_probs=174.0
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCc-----------EEEEEeCCCCCC--cc--
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGV-----------ELIPVHCRSTDN--FA-- 78 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~-----------~v~~v~~~~~~~--~~-- 78 (334)
+.+.+++++++++|+..++.... ....+|+....+|.+......-..+. .+..++.+.... +.
T Consensus 111 ~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 190 (451)
T PRK06062 111 DLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHAT 190 (451)
T ss_pred CCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCC
Confidence 35789999999999999987642 23467888887777654332202221 112222211110 10
Q ss_pred cc-------HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc
Q 019899 79 FS-------ITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV 150 (334)
Q Consensus 79 ~~-------~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~ 150 (334)
.| ++.+++.++.. ...++.+|++...+...|.+. +.+.++++.++|++||+++|+||++.+|...|..+.
T Consensus 191 ~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a 268 (451)
T PRK06062 191 TEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFA 268 (451)
T ss_pred ChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHH
Confidence 12 56677777531 113566555554466778775 666799999999999999999999987644443211
Q ss_pred -hhhhhhhccccCCCcEEEEecccccCCCCCc-eEEEEeecCHHHHHHHHHh----hcccCCChHHHHHHHHhhCChHHH
Q 019899 151 -SMAEILEAEEVDKDRVHIIYGLSKDLSLPGF-RTGVIYSYNESVLAAAKKL----TRFCSISAPTQRLLISMLSDTKFI 224 (334)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~-r~g~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~ 224 (334)
....+ .+| +.+++|.++ .|. ++|.+++ ++++.+.+... ...++.++.+..++.+.++..+
T Consensus 269 ~~~~gv------~PD----i~t~gK~lg-gG~~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~-- 334 (451)
T PRK06062 269 IEHFGV------VPD----LITFAKGVN-SGYVPLGGVAI-SEAIAATFADRPYPGGLTYSGHPLACAAAVATINAME-- 334 (451)
T ss_pred HHhcCC------CCC----eeeechhhh-cCCcCcEEEEE-cHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHH--
Confidence 11111 122 447899998 784 8999998 77888887532 2356678888777777765432
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCC--------hhhHHHHHHHHHHhcCe
Q 019899 225 QEYLETNKRRIKKLY-DSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYS--------EKGELELWDKLLNIAKI 291 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~ll~~~gi 291 (334)
+ ....++.+++- +++.+.|++. +.......-|+++.+.+........ ......+...+ .++||
T Consensus 335 -~--~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv 410 (451)
T PRK06062 335 -E--EGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAAC-KERGL 410 (451)
T ss_pred -h--cCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHH-HHCCc
Confidence 1 12333344443 3455555443 2211112235555566532111000 01234566664 45899
Q ss_pred EEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 292 NVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 292 ~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.+. .+.+|++.+. ++++|++++++++.+++++.
T Consensus 411 l~~~~-------~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 411 LPFVN-------GNRIHVVPPCTVTEDEVREGLAILDAALAVA 446 (451)
T ss_pred EEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence 87641 2468998764 69999999999999998764
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-15 Score=136.89 Aligned_cols=290 Identities=14% Similarity=0.131 Sum_probs=175.9
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhhh-hhhccC------------cEEEEEeCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDRD-IRFRTG------------VELIPVHCRST 74 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~-~~~~~g------------~~v~~v~~~~~ 74 (334)
..+.+++++++++|+..++..... ...+|+....+|.+.... +. ..| ..+..+|..+.
T Consensus 105 ~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals-~tg~~~~~~~~~~~~~~~~~~p~~~~ 183 (442)
T PRK13360 105 GLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGIS-VGGIVPNRKAFGALLPGVDHLPHTLD 183 (442)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhh-ccCChhhhhccCCCCCCCEEeCCCch
Confidence 346899999999999998775421 235788888888775322 11 111 11233332110
Q ss_pred ---CCccc--------cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 75 ---DNFAF--------SITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 75 ---~~~~~--------~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
..+.. ..++++++++.. ...++.+|++...+...|.+. +.+.+++|.++|++||+++|+||++.++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~ 261 (442)
T PRK13360 184 LARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGF 261 (442)
T ss_pred hhccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 00110 245666666531 123555555554476778865 5667999999999999999999999776
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH---------hhcccCCChHHHH
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK---------LTRFCSISAPTQR 212 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 212 (334)
...|..+.. +.. +..+| +.+++|.++ .| +++|.+++ ++++.+.+.. +...++.+++...
T Consensus 262 GrtG~~~a~--~~~---gv~PD----ivt~gK~l~-gG~~P~gav~~-~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~a 330 (442)
T PRK13360 262 GRLGAPFAA--QYF---GVTPD----LLTCAKGLT-NGAIPMGAVFV-SSEIHDAFMQGPEAGIEFFHGYTYSGHPLACA 330 (442)
T ss_pred CCCccchhh--hhc---CCCCc----eeeeeeccc-cCccceEEEEE-cHHHHHHhhcCCccccccccCCCCCCCHHHHH
Confidence 444443211 111 11122 337899997 66 78999998 8888877753 2234567888877
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccC--CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhc
Q 019899 213 LLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IRCSE--SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIA 289 (334)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (334)
++.+.++..+ + ....++++++-+++.+.|+++. ..... ...|.+..+.+....... .....++...++ ++
T Consensus 331 aa~a~L~~l~---~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~-~~~~~~~~~~l~-~~ 403 (442)
T PRK13360 331 AALATLDLYE---R--EGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKP-GKRAYEVFLKCF-EK 403 (442)
T ss_pred HHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCc-chhHHHHHHHHH-HC
Confidence 7777765322 1 1344566666677777776542 21111 112444344443221111 123346677754 48
Q ss_pred CeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 290 KINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 290 gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
||.+.++ .+.+|++... +|++++++++++|.+++++.
T Consensus 404 Gvl~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 404 GLMIRYT-------GDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred CcEEEec-------CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 9998652 2469999764 69999999999999998753
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-15 Score=135.46 Aligned_cols=286 Identities=16% Similarity=0.120 Sum_probs=177.2
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhh-hhhhccCc------------EEEEEeCCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDR-DIRFRTGV------------ELIPVHCRSTD 75 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~-~~~~~~g~------------~v~~v~~~~~~ 75 (334)
.+.+++++++++|+..++.... ....+|+....+|.+... .+. ..|. .+..++.++..
T Consensus 114 ~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals-~~~~~~~~~~~~~~~~~~~~~~~p~~~ 192 (453)
T PRK06943 114 LGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALG-VTDVALFKDAYDPLIRHAHVVASPDAR 192 (453)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhc-ccCChhhhcccccCCCCCEEECCCCcc
Confidence 3689999999999999987652 124678888888877542 222 2221 12233322111
Q ss_pred Cc----------cccHHHHHHHHHHHHHcCCceeEEEEeC-CCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccc
Q 019899 76 NF----------AFSITALDQAFNQARKRGVKVRGILICN-PANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSI 143 (334)
Q Consensus 76 ~~----------~~~~~~l~~~l~~~~~~~~~~~~i~~~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~ 143 (334)
+. .-+++++++.++. ++.++.+|++.- .+...|.+ .|.+.++++.++|++||+++|.||++.++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~G 269 (453)
T PRK06943 193 GARPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCG 269 (453)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCC
Confidence 00 0134666666653 234677676665 26667775 567789999999999999999999998875
Q ss_pred cCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--------hhcccCCChHHHHHH
Q 019899 144 FGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK--------LTRFCSISAPTQRLL 214 (334)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 214 (334)
..|..+.. ... +..--+.+++|.++ .| +++|.++. ++++.+.+.. +..+++.|++...++
T Consensus 270 RtG~~fa~-~~~--------gv~PDivt~gKgl~-gG~~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa 338 (453)
T PRK06943 270 RTGTFFAC-EQA--------GVWPDFLCLSKGIS-GGYLPLSLVLS-RDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAA 338 (453)
T ss_pred CCcchhHH-HhC--------CCCCCeEeeehhhc-cCcccceEEEE-cHHHHHhhcccCccCCccCCCCCCCCHHHHHHH
Confidence 54543221 111 11112335789998 88 59999998 8888887752 234566788888877
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcC
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAK 290 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 290 (334)
.+.++..+ + ....++.+++-+++.+.|+++ ++.-+. .-|+++.+++...... .......+...+ .++|
T Consensus 339 ~a~L~~i~--~---~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vr-G~Gl~~gvel~~~~~~-~~~~~~~i~~~~-~~~G 410 (453)
T PRK06943 339 LATLDLFA--E---DDVLARNARKSARLRAALAPLAAHPQVRHLR-QRGTIFAFDVALDGDA-ARTFSRRFFEAA-LERE 410 (453)
T ss_pred HHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHhcCCCEEeEe-ccccEEEEEEccCCCc-chHHHHHHHHHH-HHCC
Confidence 77775432 1 123344555555666666553 122112 2355566666422111 111234566664 4589
Q ss_pred eEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 291 INVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 291 i~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
|.+.+.. +.+|++... ++++|+++++++|.+++++
T Consensus 411 ll~~~~g-------~~l~~~Ppl~it~~eid~~~~~l~~al~~ 446 (453)
T PRK06943 411 LLLRPIG-------TTVYLMPPYVLDDDEIAWLAERTRATLDA 446 (453)
T ss_pred cEEEecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 9987631 358998653 6999999999999999875
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=137.81 Aligned_cols=285 Identities=12% Similarity=0.091 Sum_probs=178.7
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChh-hhhhhccCc-------------EEEEEe
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFD-RDIRFRTGV-------------ELIPVH 70 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~-~~~~~~~g~-------------~v~~v~ 70 (334)
.+.+.+.+++++++++|+..++..... ...+|+....+|.+.. ..+. ..+- .+..+|
T Consensus 100 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s-~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
T PRK06173 100 LPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMS-VCDPVTGMHGLFNHSLPVQYFLP 178 (429)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhc-cCCCchhhhhcccccCCCCeEeC
Confidence 333456899999999999998776431 2357888888887642 2222 1110 122333
Q ss_pred CCCCC---C-ccccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccC-CCHHHHHHHHHHHHhcCcEEEEecccccccc
Q 019899 71 CRSTD---N-FAFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIF 144 (334)
Q Consensus 71 ~~~~~---~-~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~ 144 (334)
.+... . ..-+++.+++.++. .+.++.+|++... +...|.+ .|.+.++++.++|++||+++|+||++.++..
T Consensus 179 ~p~~~~~~~~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~Gr 255 (429)
T PRK06173 179 QPSIKFGEEWNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGR 255 (429)
T ss_pred CCCcccchhHHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCc
Confidence 21110 0 01145666677753 2346776666643 6777876 5777899999999999999999999977544
Q ss_pred CCCCc-chhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH-------hhcccCCChHHHHHHH
Q 019899 145 GNEEF-VSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK-------LTRFCSISAPTQRLLI 215 (334)
Q Consensus 145 ~~~~~-~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 215 (334)
.|..+ .....+ .+| + .+++|.++ .| +.++.++. ++++.+.+.. +..+++.+++...++.
T Consensus 256 tG~~~a~~~~gv------~PD--i--v~~gK~l~-gG~~p~~a~~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~ 323 (429)
T PRK06173 256 TGKLFALEHAGV------VPD--I--MCIGKALT-GGYLTLSATIT-TEAIAQTICSGEAKCFMHGPTFMANPLACAIAA 323 (429)
T ss_pred CCcchHHHhcCC------CCC--E--EEeehhhh-CCccccceEEe-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHH
Confidence 44332 111111 122 2 24899997 78 47888988 8888887753 2233456777777777
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
+.++.. ++ ....++++++-+++.+.|++. ++..... ..|.+..+.+.... ....+... +.++||.
T Consensus 324 a~l~~i---~~--~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~------~~~~i~~~-l~e~Gi~ 391 (429)
T PRK06173 324 ESIRLL---LE--SPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV------NMATLQPR-FVEHGIW 391 (429)
T ss_pred HHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcc------cHHHHHHH-HHHCCeE
Confidence 666432 21 123556677777777777754 3332211 23566666665321 23466666 5558999
Q ss_pred EcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 293 VTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 293 v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+.+.. +.+|+..+- ++++++++++++|.+++++
T Consensus 392 v~~~g-------~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 392 VRPFG-------KLVYIMPPFIISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred EEecC-------CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 87631 478998774 6999999999999999865
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-17 Score=140.17 Aligned_cols=283 Identities=15% Similarity=0.168 Sum_probs=199.2
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC-
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV- 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~- 96 (334)
+-+++..| -..+...+.+++.+|.-|+.++..|.++...++ +.|+.++.+. +.|+++|++.|++....|.
T Consensus 199 ~a~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaR-LSgAtiRVfk-------HNdm~~LEr~Lrd~I~~gqP 269 (519)
T KOG1357|consen 199 DAIVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGAR-LSGATTRVFR-------HNDMQGLERLLRDAIVYGQP 269 (519)
T ss_pred ceEEEecc-ccccccCcceeecCCcceeeccccchheecccc-ccCceEEEEe-------cCCHHHHHHHHHHHHhcCCC
Confidence 44555554 667777888999999999999999999999999 9999988887 3489999999998865432
Q ss_pred c-----eeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC--CCCcchhhhhhhccccCCCcEEE
Q 019899 97 K-----VRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG--NEEFVSMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 97 ~-----~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 168 (334)
+ -+.+++... ...-|.+.+ +.+++++++++..+++.||+|+....+ |.....+...++ .+.++.
T Consensus 270 ~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~-----~dvDIm 341 (519)
T KOG1357|consen 270 KTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDP-----EDVDIM 341 (519)
T ss_pred CcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCc-----hhheee
Confidence 1 133444444 458888988 999999999999999999999986653 333344554444 677889
Q ss_pred EecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--c--CCChHHHHHHHHhhCC--hHHHHHHHHHHHHHHHHHHHHH
Q 019899 169 IYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--C--SISAPTQRLLISMLSD--TKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 169 ~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
+++|+|++|..| |++.+ ++++.+.++..... + ..+++........++. ++...+..++..+++.++..++
T Consensus 342 MGtftKSfga~G---Gyiag-sk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yf 417 (519)
T KOG1357|consen 342 MGTFTKSFGAAG---GYIAG-SKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYF 417 (519)
T ss_pred cceehhhccccc---ceecC-cHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHH
Confidence 999999998666 77776 89999998875443 2 2333333333333321 1111334567778899999999
Q ss_pred HHHHHhCCCcccCCCceeE--EeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC-cCCCCCCeEEEEecC-CCccc
Q 019899 243 VAGLKQLGIRCSESSAGLY--CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA-CHCIEPGWFRCCFTS-LTHED 318 (334)
Q Consensus 243 ~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~-~~~~~~~~iRi~~~~-~~~~~ 318 (334)
+..|++.|+.+...+.... +.+..|..+ ..+-+.|++ .+|.+..+.+ ..+--....|+|.++ .+.|+
T Consensus 418 r~~l~~~gfivyG~~dSpVvplll~~~~k~--------~~f~r~~l~-~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ 488 (519)
T KOG1357|consen 418 RWELQKMGFIVYGNNDSPVVPLLLYGPAKI--------VAFSREMLE-RNIGVVVVGFPATPLLESRARFCLSASHTKED 488 (519)
T ss_pred HHhhhcCcEEEecCCCCCcceeeecCcccc--------cHHHHHHHh-cCceEEEEeCCCchHHHhHHHhhhcccccHHH
Confidence 9999999999887666532 222333322 366677666 5665543333 222234678999885 69999
Q ss_pred HHHHHHHHHHHH
Q 019899 319 IPLVIERIQKVA 330 (334)
Q Consensus 319 l~~~l~~l~~~~ 330 (334)
++.+++.+.++-
T Consensus 489 ld~~l~~i~~~g 500 (519)
T KOG1357|consen 489 LDRALEVIDRVG 500 (519)
T ss_pred HHHHHHHHhhhc
Confidence 999999988764
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-15 Score=137.31 Aligned_cols=277 Identities=16% Similarity=0.130 Sum_probs=166.9
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhc--c----------Cc------EEEEEeCCCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFR--T----------GV------ELIPVHCRSTDN 76 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~--~----------g~------~v~~v~~~~~~~ 76 (334)
.+.+.+++++++|+..++.... ...++|+....+|.+..+..... . |. .+..+|.
T Consensus 130 ~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----- 204 (453)
T PRK07046 130 LPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF----- 204 (453)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-----
Confidence 5789999999999999987652 34578888888888763221100 0 10 1111111
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIP-RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
.|++.+++.+.. .++.+|++...+...|.+.+ .+.++++.++|++||+++|.||++. |..+-.+......+
T Consensus 205 --nd~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~~~~gv 276 (453)
T PRK07046 205 --NDLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYTRAHGL 276 (453)
T ss_pred --CCHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcchhHHhCC
Confidence 278888888842 35665555433555566554 4579999999999999999999986 32211112222221
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-----------hhcccCCChHHHHHHHHhhCChHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-----------LTRFCSISAPTQRLLISMLSDTKFI 224 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (334)
. + -+.+++|.+| .|+++|.+++ ++++.+.+.. +...++.|+.+..+..+.++..+
T Consensus 277 ~------P----Di~t~gK~lg-gG~Pi~av~g-~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~-- 342 (453)
T PRK07046 277 E------P----DFLVVGKPIA-GGVPCAVYGF-SAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVM-- 342 (453)
T ss_pred C------c----cceeehhhhc-CCCcceeeee-hHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHh--
Confidence 1 2 2346899998 8999999998 8888888753 12345678888777777765321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhCCCccc-CCCceeEEeeecCC-cCCCC-------ChhhHHHHHHHHHHhcCe
Q 019899 225 QEYLETNKRRIKKLYDSFVAGL----KQLGIRCS-ESSAGLYCWADMSG-LIPSY-------SEKGELELWDKLLNIAKI 291 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l----~~~g~~~~-~~~~g~~~~~~~~~-~~~~~-------~~~~~~~~~~~ll~~~gi 291 (334)
+ ....+++.++-+++.+.| ++.++... ...+. .+.+.+.. ..... ...-...+...+++ +||
T Consensus 343 ~---~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv 417 (453)
T PRK07046 343 T---EAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGA-RVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLN-RGV 417 (453)
T ss_pred c---ccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCc-EEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHH-CCC
Confidence 1 112233333344444444 34454432 22222 23333321 11100 11112345566555 799
Q ss_pred EEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 292 NVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 292 ~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.|.. +.++++.. ++++|++++++++.+++++.
T Consensus 418 ~~~~~~-------~~~~~~p~-~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 418 LITPFH-------NMMLVCPA-TTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred EEeccc-------CcEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 987621 34778876 89999999999999998763
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-15 Score=146.86 Aligned_cols=301 Identities=11% Similarity=0.083 Sum_probs=183.0
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC------------cEEEEEeCCCC--CC
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG------------VELIPVHCRST--DN 76 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~~~~~--~~ 76 (334)
.+...+.+++++++++|+..++.... ....+|+....+|.+.........+ ..+..++.++. ..
T Consensus 676 ~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 755 (1013)
T PRK06148 676 LPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGP 755 (1013)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccC
Confidence 33334689999999999999987652 2345788888877765432210111 11111121100 00
Q ss_pred ccc--------cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCC
Q 019899 77 FAF--------SITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNE 147 (334)
Q Consensus 77 ~~~--------~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~ 147 (334)
+.. ..+.+++.++.....+.++.+|++.......|.+. |.+.++++.++|+++|+++|.||++.+|...|.
T Consensus 756 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~ 835 (1013)
T PRK06148 756 ERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGS 835 (1013)
T ss_pred CCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCC
Confidence 110 12445666654333344667666554465566654 667799999999999999999999988754443
Q ss_pred CcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH---hhcccCCChHHHHHHHHhhCChHHH
Q 019899 148 EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK---LTRFCSISAPTQRLLISMLSDTKFI 224 (334)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (334)
.+..... .+..--+.+++|.+| .|+++|.+++ ++++.+.+.. +..+++.|+.+..++.+.++..+
T Consensus 836 ~~~a~e~--------~gv~PDivt~gK~lg-gG~Plgav~~-~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~-- 903 (1013)
T PRK06148 836 HWWAFET--------QGVVPDIVTMGKPIG-NGHPMGAVVT-TREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIE-- 903 (1013)
T ss_pred cchhhhh--------cCCCcceeeeccccc-CCcceEEEEE-cHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHh--
Confidence 2111111 122223456899998 8999999998 8888887753 33556778888888777765432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCC--ChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSY--SEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+ +...++.+++-+++.+.|+++ ++......-|.++.+++....... .......+...++ ++||.+.+...
T Consensus 904 ~---e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g~ 979 (1013)
T PRK06148 904 D---EDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGAR-ERGILIGTEGP 979 (1013)
T ss_pred h---ccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHH-hCCeEEeccCC
Confidence 1 133444555556666666553 322112223566666664321111 1122345666644 48999976432
Q ss_pred cCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 299 CHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+.+|+..+. ++++++++++++|.+++++.
T Consensus 980 ----~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 980 ----HDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred ----CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 14678998774 69999999999999998763
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-15 Score=134.97 Aligned_cols=292 Identities=15% Similarity=0.102 Sum_probs=173.3
Q ss_pred CCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhhh-hhhccCc------------EEEEEeCCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDRD-IRFRTGV------------ELIPVHCRSTD 75 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~-~~~~~g~------------~v~~v~~~~~~ 75 (334)
.+.+++++++++|+..++..... ...+|+....+|.+.... +. ..+. .+..++.+...
T Consensus 104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 182 (449)
T PRK07481 104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGAS-VNGNTVFRRNYEPLLPGCFHVETPWLY 182 (449)
T ss_pred CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhc-cCCCcccccccCCCCCCCEEeCCCccc
Confidence 45899999999999999876421 235788888888774332 22 1111 12223221100
Q ss_pred C--cc-ccHHHHHHHH----HHHH--HcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccC
Q 019899 76 N--FA-FSITALDQAF----NQAR--KRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFG 145 (334)
Q Consensus 76 ~--~~-~~~~~l~~~l----~~~~--~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~ 145 (334)
. +. .|.+.+++.+ ++.- .+.+++.+|++...+...|.+. +.+.++++.++|++||+++|.||++.+|...
T Consensus 183 ~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRt 262 (449)
T PRK07481 183 RNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRT 262 (449)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcC
Confidence 0 11 1344433222 2111 1224567666665477778755 5667999999999999999999999886544
Q ss_pred CCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH---------hhcccCCChHHHHHHH
Q 019899 146 NEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK---------LTRFCSISAPTQRLLI 215 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 215 (334)
|..+.. ... +..+| +.+++|.++ .| +++|.+++ ++++.+.+.. +..+++.|+++..++.
T Consensus 263 G~~~a~-~~~----gv~PD----iv~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~ 331 (449)
T PRK07481 263 GSWFGS-RGW----GVKPD----IMCLAKGIT-SGYVPLGATMV-NARIADAFEANADFGGAIMHGYTYSGHPVACAAAL 331 (449)
T ss_pred chhhHh-hhc----CCCCC----EEEEeeccc-CCCcCceEEEE-cHHHHHHHhccCccccccccCCCCCCCHHHHHHHH
Confidence 432211 111 11122 345789998 78 58999998 7888887753 2334667888887777
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCC-----ChhhHHHHHHHHH
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSY-----SEKGELELWDKLL 286 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~ll 286 (334)
+.++..+ + ....++.+++-+++.+.|++. ++......-|.++.+++....... .......+...++
T Consensus 332 a~L~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (449)
T PRK07481 332 ATLDIVV--R---EDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVAR 406 (449)
T ss_pred HHHHHHH--h---hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHH
Confidence 7765422 1 123344555555566666553 222112223556666664321100 0112335666644
Q ss_pred HhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 287 NIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 287 ~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++||.+.+.. +.+|++... +|++|++++++.+.+++++.
T Consensus 407 -~~Gvl~~~~g-------~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 407 -ENGVLVRPSG-------TKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred -hCCeEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4899997632 248888664 59999999999999999764
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-15 Score=135.13 Aligned_cols=292 Identities=11% Similarity=0.066 Sum_probs=173.8
Q ss_pred CCcEEEecCcHHHHHHHHHHhcC-------C-CCeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCCC-
Q 019899 17 PSQIVLTAGATPAVEILCFCLAD-------H-GNALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRSTD- 75 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~-------~-gd~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~~- 75 (334)
.+.+++++++++|+..++..... + ..+|+....+|.+......-..|. .+..+|.++..
T Consensus 129 ~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~ 208 (472)
T PRK08742 129 LSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYL 208 (472)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccc
Confidence 35899999999999998876521 2 367888888887754332202221 12233321100
Q ss_pred -Ccc--------ccHHHHHHHHHHHHHcCCceeEEEEeC-CCCCcccC-CCHHHHHHHHHHHHhcCcEEEEecccccccc
Q 019899 76 -NFA--------FSITALDQAFNQARKRGVKVRGILICN-PANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIF 144 (334)
Q Consensus 76 -~~~--------~~~~~l~~~l~~~~~~~~~~~~i~~~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~ 144 (334)
... .+++.+++.++. ...++.+|++.. .++..|.+ .|.+.++++.++|++||+++|.||++.+|..
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGR 285 (472)
T PRK08742 209 AEPGQSAEDYALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGR 285 (472)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 001 124555666642 223666666554 26667774 5677899999999999999999999988765
Q ss_pred CCCCcchhhhhhhccccCCCcEEEEecccccCCCCCc-eEEEEeecCHHHHHHHHH--------hhcccCCChHHHHHHH
Q 019899 145 GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF-RTGVIYSYNESVLAAAKK--------LTRFCSISAPTQRLLI 215 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~-r~g~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 215 (334)
.|..+..- . .+..--+.+++|.++ .|. ++|.+++ ++++.+.+.. +..+++.+++...++.
T Consensus 286 tG~~~a~e-~--------~gv~PDiv~~gKgl~-gG~~Plaav~~-~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~ 354 (472)
T PRK08742 286 TGTLFACE-Q--------AGVMPDLLCLSKGLT-GGFLPLSAVLA-TQQLYDAFLDDSRERAFLHSHSYTGNPLACAAAL 354 (472)
T ss_pred CccchHHH-h--------cCCCCCEEEEccccc-CCCCCcceeec-cHHHHHHhhccCccCccCcCCCCCccHHHHHHHH
Confidence 55433211 1 111122335789998 784 8999998 8888877742 2345667888887777
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCCh-----hhHHHHHHHHHHhcC
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSE-----KGELELWDKLLNIAK 290 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~g 290 (334)
+.++..+ ++.+.++.+++.+....+.+.+.++++-.....-|+++.+++......... .....+...+ .++|
T Consensus 355 a~L~~i~--~~~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~-~~~G 431 (472)
T PRK08742 355 ATLDIFA--DDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAA-LARG 431 (472)
T ss_pred HHHHHHH--HCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHH-HHCC
Confidence 7775432 222222222222222233333433332111223466666766432211111 1123455664 4589
Q ss_pred eEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 291 INVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 291 i~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
|.+.+. .+.+||..+- ++++++++++++|.+++++
T Consensus 432 ll~~~~-------g~vi~~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 432 VVLRPL-------GDVLYWMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred eEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999762 1479998774 6999999999999999875
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-15 Score=135.06 Aligned_cols=287 Identities=13% Similarity=0.097 Sum_probs=170.5
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhh----hhhccCcEE----EEE--eCCCCCC---ccccH
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRD----IRFRTGVEL----IPV--HCRSTDN---FAFSI 81 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~----~~~~~g~~v----~~v--~~~~~~~---~~~~~ 81 (334)
.+.+++++++++|+..++.... ....+|+....+|.+..+. .. ..+... ..+ +...... ...|+
T Consensus 110 ~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (433)
T PRK00615 110 DHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGIS-FSETSLDTLTHLVDTDLAHPLTLSLPYNDF 188 (433)
T ss_pred cCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccc-cCCCCcCcCCCCCCCCCCCCCeEeCCCCCH
Confidence 4689999999999999987652 2345788888888775421 11 111100 000 0000000 01268
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIP-RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+.+++.+++. +.++.+|++.......|.+.+ .+.+++|.++|++||+++|+||++.++ ..|... ..+.. +
T Consensus 189 ~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~g--a~~~~---g 259 (433)
T PRK00615 189 QIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGG--AAAIY---H 259 (433)
T ss_pred HHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhH--HHHhc---C
Confidence 8888888643 235565555444666787665 567999999999999999999999766 333211 11111 1
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-----hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
..++ + .+++|.+| .|+.+|++++ ++++.+.+... ...++.++....++.+.++..+ + ....+++
T Consensus 260 v~PD--i--~~~gK~lg-gG~p~~av~~-~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~---~--~~~~~~~ 328 (433)
T PRK00615 260 VKPD--I--TVYGKILG-GGLPAAAVVA-HKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCR---E--QGFYTQL 328 (433)
T ss_pred CCCC--e--EEEccccc-CCcceeeeee-cHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHh---c--ccHHHHH
Confidence 1122 2 35899998 7888999998 88888887532 2234557777777666664322 1 1233444
Q ss_pred HHHHHHHHHHH----HhCCCcccCCCceeEEeeecCCcCCC-------CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 236 KKLYDSFVAGL----KQLGIRCSESSAGLYCWADMSGLIPS-------YSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 236 ~~~~~~~~~~l----~~~g~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
+++-+++.+.| ++.|+.+.....|.++.+.+...... ...+....+...|++ +||.+.|....
T Consensus 329 ~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~----- 402 (433)
T PRK00615 329 STLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPSPFE----- 402 (433)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCcccc-----
Confidence 44455554444 44455432222465666666532110 011223356677445 89999875421
Q ss_pred CeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 305 GWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 305 ~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
.+ =++.. .+++||+++++++.+++++
T Consensus 403 ~~-~ls~~-ht~~did~~~~a~~~~~~~ 428 (433)
T PRK00615 403 AS-FLSSA-HSMENLDYAQNVLIDSLEK 428 (433)
T ss_pred cc-ceecC-CCHHHHHHHHHHHHHHHHH
Confidence 11 14444 6999999999999999876
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-15 Score=134.35 Aligned_cols=292 Identities=16% Similarity=0.073 Sum_probs=174.6
Q ss_pred cEEEe-cCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC------------cEEEEEeCCCCCC--c----
Q 019899 19 QIVLT-AGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG------------VELIPVHCRSTDN--F---- 77 (334)
Q Consensus 19 ~i~~~-~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~~~~~~~--~---- 77 (334)
.++++ +++++|+..++.... ....+|+....+|.+......-..| .++..+|.++... +
T Consensus 128 ~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 207 (464)
T PRK06938 128 KIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGG 207 (464)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCch
Confidence 56565 799999999987652 2346788888777765432220111 1233444321110 0
Q ss_pred ----cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 78 ----AFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 78 ----~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
..+++.+++.+++......++.+|++...+...|.+. |.+.++++.++|++||+++|.||++.+|...|..+. .
T Consensus 208 ~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a-~ 286 (464)
T PRK06938 208 EAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFA-F 286 (464)
T ss_pred hhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHH-H
Confidence 1236677777764321222566665554366667765 577899999999999999999999988754443221 1
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH--HhhcccCCChHHHHHHHHhhCChHHHHHHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK--KLTRFCSISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
.. .+..--+.+++|.++ .|+++|.++. ++++ +.+. .+..+++.|+++..++.+.++..+ + ++
T Consensus 287 e~--------~gv~PDiv~~gKglg-gG~PlsAv~~-~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~--~---~~ 350 (464)
T PRK06938 287 EH--------AGIIPDVVVLSKAIG-GSLPLAVVVY-REWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIK--E---HR 350 (464)
T ss_pred Hh--------cCCCCCEEEeecccc-CCCceEEEee-hhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHH--H---hH
Confidence 11 111122345789998 8899999998 5554 5443 234556788888888777775432 1 12
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCC--------CChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 231 NKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPS--------YSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
..++.+++-+++.+.|+++ ++......-|+++.+++...... ........+...++ ++|+.+.++..
T Consensus 351 l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~g~ 429 (464)
T PRK06938 351 LAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECL-RRGLILELGGR 429 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHH-HCCeEEeecCC
Confidence 3334444455555555443 32222223356666766432110 01112334666644 58999876432
Q ss_pred cCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 299 CHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+ .+.+|+..+. ++++|++++++++.+++++
T Consensus 430 ~----~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 430 H----GSVVRFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred C----CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 2 3679998664 6999999999999999865
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-15 Score=134.41 Aligned_cols=295 Identities=14% Similarity=0.110 Sum_probs=176.8
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhhhhhccCc------------EEEEEeCC
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCR 72 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~ 72 (334)
++.+.+.+++++++++|+..++.... ....+|+....+|.+......-..+. .+..++.+
T Consensus 105 ~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p 184 (460)
T PRK06105 105 APVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCP 184 (460)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCC
Confidence 33345689999999999999988742 12357888777776644322101221 12222221
Q ss_pred CCCCc-----------cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEecccc
Q 019899 73 STDNF-----------AFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYG 140 (334)
Q Consensus 73 ~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~ 140 (334)
+...+ ....+++++.+... ..+++.+|++...+...|.+. |.+.++++.++|++||+++|+||++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~t 262 (460)
T PRK06105 185 HYYRFGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVIC 262 (460)
T ss_pred cccccccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEecccc
Confidence 10000 01235566665421 113566555554477778764 77789999999999999999999997
Q ss_pred ccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH---------hhcccCCChHH
Q 019899 141 GSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK---------LTRFCSISAPT 210 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~---------~~~~~~~~~~~ 210 (334)
++...|..+. .... +..+| +.+++|.++ .| +++|.+++ ++++.+.+.. +...++.|+++
T Consensus 263 G~GRtG~~f~-~~~~----~v~PD----i~~~gK~lg-gG~~P~~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~ 331 (460)
T PRK06105 263 GFGRTGNMFG-CETF----GIKPD----ILVMSKQLS-SSYQPLSAVLM-NEKVYDPIADESGKIGTFGHGFTASGHPVA 331 (460)
T ss_pred CCCcCchhhh-HHhc----CCCCC----eeeeecccc-cCcccceEEEE-cHHHHHHHhcccccCcccccCCCCCCCHHH
Confidence 7654444321 1111 11122 447899998 66 68999998 7888887753 22345678888
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCceeEEeeecCCcCCCC-----ChhhHHHHH
Q 019899 211 QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSY-----SEKGELELW 282 (334)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~ 282 (334)
..++.+.++..+ + ....++++++-+++.+.|+++ ++......-|++..+++....... .......+.
T Consensus 332 ~aaa~a~L~~i~---~--~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~ 406 (460)
T PRK06105 332 AAVALENLAIIE---E--RDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARAN 406 (460)
T ss_pred HHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHH
Confidence 777777764322 1 234455566666666666554 211111223555556663221110 011123566
Q ss_pred HHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 283 DKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 283 ~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.. +.++||.+.|. .+.+|++... ++++|++++++++.+++++.
T Consensus 407 ~~-~~~~Gvl~~~~-------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 450 (460)
T PRK06105 407 AA-AHEHGVISRAM-------GDTLAFCPPLIITAAQVDEMVDRFGRALDDV 450 (460)
T ss_pred HH-HHHCCeEEEec-------CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 66 44589999763 1478998774 59999999999999998763
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-14 Score=132.72 Aligned_cols=305 Identities=13% Similarity=0.096 Sum_probs=178.6
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhhhhhccCc------------EEE
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRDIRFRTGV------------ELI 67 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~------------~v~ 67 (334)
++...++...+.+++++++++|+..++.... ....+|+....+|.+......-..+. .+.
T Consensus 82 ~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~ 161 (447)
T PRK06917 82 KLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYP 161 (447)
T ss_pred HHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCe
Confidence 3333333334689999999999999988652 12367888888887754432202221 112
Q ss_pred EEeCCCCCCc----------cccHHHHHHHHHHHHHcCCceeEEEEeCCCC-CcccC-CCHHHHHHHHHHHHhcCcEEEE
Q 019899 68 PVHCRSTDNF----------AFSITALDQAFNQARKRGVKVRGILICNPAN-PVGNI-IPRETLYELLDFAREKNIHVIS 135 (334)
Q Consensus 68 ~v~~~~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~n-ptG~~-~~~~~l~~i~~~~~~~~~~vi~ 135 (334)
.++.+..... .-+++.+++.++.. ...++.+|++..... ..|.+ .+.+.++.+.++|++||+++|+
T Consensus 162 ~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~ 239 (447)
T PRK06917 162 TISAPYCYRCPVQKVYPTCQLACATELETAIERI--GAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIA 239 (447)
T ss_pred EeCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEE
Confidence 2221111000 01235556666531 112566565554344 44554 4677899999999999999999
Q ss_pred eccccccccCCCCcc-hhhhhhhccccCCCcEEEEecccccCCCCCc-eEEEEeecCHHHHHHHHHh------hcccCCC
Q 019899 136 DEIYGGSIFGNEEFV-SMAEILEAEEVDKDRVHIIYGLSKDLSLPGF-RTGVIYSYNESVLAAAKKL------TRFCSIS 207 (334)
Q Consensus 136 D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~-r~g~i~~~~~~~~~~~~~~------~~~~~~~ 207 (334)
||++.+|...|..+. ....+ .+| +.+++|.++ .|. ++|.+++ ++++.+.+... ..+++.|
T Consensus 240 DEv~tGfGRtG~~~a~~~~gv------~PD----i~~~gK~l~-~G~~Pi~a~~~-~~~i~~~~~~~~~~~~~~~T~~gn 307 (447)
T PRK06917 240 DEVMTGLGRTGAMFAMEHWGV------EPD----IMTLGKGLG-AGYTPIAATVV-SDRVMEPILRGSRSIMSGHTLSAN 307 (447)
T ss_pred echhhCcCcccchhhHHhcCC------CCC----EEEeeehhc-cCCcceEEEEE-cHHHHHHHhccCcccccccCCCCC
Confidence 999987644443221 11111 122 346899998 785 8999998 78888877532 2345678
Q ss_pred hHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCC-----ChhhH
Q 019899 208 APTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSY-----SEKGE 278 (334)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~ 278 (334)
++...++.+.++..+ + ....++++++-+++.+.|+++ ++......-|.++.+++....... .....
T Consensus 308 pl~~aaa~a~l~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~ 382 (447)
T PRK06917 308 PLSAATALAVLEYME--K---HNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVA 382 (447)
T ss_pred HHHHHHHHHHHHHHH--H---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHH
Confidence 888877777765422 1 123445555556666666553 322112223555556653211100 01123
Q ss_pred HHHHHHHHHhcCeEEcCCCC-cCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 279 LELWDKLLNIAKINVTPGSA-CHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 279 ~~~~~~ll~~~gi~v~~g~~-~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
..+...++ ++||.+.|... ......+.+|++.+- ++++|++++++++.+++++
T Consensus 383 ~~~~~~~~-~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 437 (447)
T PRK06917 383 SELISVAA-KNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEE 437 (447)
T ss_pred HHHHHHHH-hCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 45666644 48999987421 111124678998764 6999999999999999865
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-15 Score=136.89 Aligned_cols=282 Identities=14% Similarity=0.108 Sum_probs=176.4
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhhhhhhccCcE-------------EEEEeCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDRDIRFRTGVE-------------LIPVHCRST 74 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~~g~~-------------v~~v~~~~~ 74 (334)
.-+.+++++++++++..++..... ...+|+....+|.+....+.-..+.. +..++.+.
T Consensus 104 ~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~- 182 (427)
T TIGR00508 104 ALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQ- 182 (427)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCC-
Confidence 346899999999999988875431 13578888888876543222022211 11222110
Q ss_pred CCc-----cccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC
Q 019899 75 DNF-----AFSITALDQAFNQARKRGVKVRGILICNP-ANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE 147 (334)
Q Consensus 75 ~~~-----~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~ 147 (334)
..+ .-|++++++.++.. +.++.+|++... +...|. ..+.+.++++.++|++||+++|+||++.++...|.
T Consensus 183 ~~~~~~~~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~ 259 (427)
T TIGR00508 183 NRFDEEWNEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK 259 (427)
T ss_pred ccccchhHHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc
Confidence 111 12566777777542 235665555542 555666 44788999999999999999999999977655454
Q ss_pred Ccch-hhhhhhccccCCCcEEEEecccccCCCCCc-eEEEEeecCHHHHHHHHH-------hhcccCCChHHHHHHHHhh
Q 019899 148 EFVS-MAEILEAEEVDKDRVHIIYGLSKDLSLPGF-RTGVIYSYNESVLAAAKK-------LTRFCSISAPTQRLLISML 218 (334)
Q Consensus 148 ~~~~-~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~-r~g~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l 218 (334)
.+.. ...+. ++ ++ +++|.++ .|+ .++.++. ++++.+.++. +..++..+++...++.+.+
T Consensus 260 ~~~~~~~~v~------pD--i~--~~gK~l~-gG~~p~~a~~~-~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l 327 (427)
T TIGR00508 260 LFACEHAGVV------PD--IL--CVGKALT-GGYMTLSATVT-TDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASL 327 (427)
T ss_pred cchhhhcCCC------CC--EE--Eechhhh-cCcccceEEEE-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHH
Confidence 3222 22221 22 22 4799996 784 7888887 8888888864 2234456777777777776
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCC--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 219 SDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIR-CSES--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
+..+ + ....++++++.+++.+.|++++.. .... .-|.++.+.+... .....+...++ ++||.+.+
T Consensus 328 ~~l~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~-~~Gv~~~~ 395 (427)
T TIGR00508 328 AILL---E--GEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKP------VNVEELQKKFV-EQGVWIRP 395 (427)
T ss_pred HHHH---h--CCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCc------cCHHHHHHHHH-HCCeEEEe
Confidence 5321 1 123466777777788877765321 1111 1245555666432 12356777744 48999865
Q ss_pred CCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 296 GSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.. +.+|++... ++++|++++++++.+++++
T Consensus 396 ~~-------~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 396 FG-------KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred cC-------CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 32 368998774 6999999999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-14 Score=144.60 Aligned_cols=304 Identities=15% Similarity=0.174 Sum_probs=180.4
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhh-hhccC-----c--------EEEEEeC
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDI-RFRTG-----V--------ELIPVHC 71 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~-~~~~g-----~--------~v~~v~~ 71 (334)
++...++-..+.+++++++++|+..++... .....+|+....+|.+..... . ..+ . .+..++.
T Consensus 632 ~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~-~s~~~~~~~~~~~~~~~~v~~~~~ 710 (972)
T PRK06149 632 RLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDA-VSTSIADNPQALETRPDWVHPVES 710 (972)
T ss_pred HHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhh-hcCCccccccccCCCCCCeEEeCC
Confidence 343334334568999999999999998843 123456777777776533211 1 100 0 1223332
Q ss_pred CCCCC--cc-cc-----HHHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 72 RSTDN--FA-FS-----ITALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 72 ~~~~~--~~-~~-----~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
++... +. .+ .+++++.++.....+.++.+|++.......|. ..+.+.++++.++|++||+++|+||++.+|
T Consensus 711 p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGf 790 (972)
T PRK06149 711 PNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGY 790 (972)
T ss_pred CcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcC
Confidence 11111 11 11 35555566544333446665555544555565 456777999999999999999999999776
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH---hhcccCCChHHHHHHHHhhC
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK---LTRFCSISAPTQRLLISMLS 219 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~ 219 (334)
...|..+..+... +..+| +.+++|.+| .|..+|++++ ++++.+.+.. +.+.++.|+.+..++.+.++
T Consensus 791 GRtG~~~~a~e~~----gv~PD----ivt~gK~lg-~G~Pl~av~~-~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~ 860 (972)
T PRK06149 791 GRLGHYFWGFEQQ----GVVPD----IITMAKGMG-NGHPLGAVIT-RREIAEALEAEGYFFSSTGGSPVSCRIGMAVLD 860 (972)
T ss_pred CccCccchhhhhc----CCCCC----EEEeccccc-CCeeeEEEEE-cHHHHhhhccCCcccCCCCCCHHHHHHHHHHHH
Confidence 5444322222111 11122 337899998 8899999998 8888888763 22334678888887777765
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEE
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINV 293 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v 293 (334)
..+ + +.+.++.+++-+++.+.|+++ ++......-|+++.+++...... ........+...+++ +||.+
T Consensus 861 ~i~--~---e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~-~Gvl~ 934 (972)
T PRK06149 861 VLR--E---EKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLE-LGVIM 934 (972)
T ss_pred HHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHh-CCeEE
Confidence 432 1 133444555556666666553 32211222355666666321111 111223456777555 89999
Q ss_pred cCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 294 TPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 294 ~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.|... ..+.+||...- +++++++.+++++.+++++
T Consensus 935 ~~~g~----~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 935 QPTGD----HLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred eecCC----CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 77421 24678987663 6999999999999999875
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-15 Score=135.93 Aligned_cols=290 Identities=15% Similarity=0.145 Sum_probs=175.9
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc------C--CCCeEEecCCCCCChhhh-hhhccC------------cEEEEEeCCC-
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA------D--HGNALLVPSPYYPGFDRD-IRFRTG------------VELIPVHCRS- 73 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~------~--~gd~vl~~~p~~~~~~~~-~~~~~g------------~~v~~v~~~~- 73 (334)
..+.+++++++++|+..++.... . ...+|+....+|.+.... +. ..| ..+..+|..+
T Consensus 108 ~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals-~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (445)
T PRK09221 108 GLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGIS-VGGIVNNRKMFGGLLPGVDHLPHTLD 186 (445)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhc-cCCChhhhhccCCCCCCCeEeCCCcc
Confidence 34689999999999999887542 1 235788888888765322 21 111 1122333211
Q ss_pred CC--Ccc--------ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 74 TD--NFA--------FSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 74 ~~--~~~--------~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
.. .+. ...+++++.++.. ..+++.+|++...+...|.+. +.+.++++.++|++||+++|+||++.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~ 264 (445)
T PRK09221 187 LPENAFSKGQPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGF 264 (445)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCC
Confidence 00 000 1135666666531 113566666655477788865 4567999999999999999999999875
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH---------hhcccCCChHHHH
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK---------LTRFCSISAPTQR 212 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 212 (334)
...|..+. .... +..+| +.+++|.++ .| +++|.+++ ++++.+.+.. +...++.+++...
T Consensus 265 GRtG~~~~-~~~~----gv~PD----i~~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~a 333 (445)
T PRK09221 265 GRLGAAFA-AERF----GVTPD----IITFAKGLT-NGAIPMGAVIA-SDEIYDAFMQGPEYAIEFFHGYTYSAHPVACA 333 (445)
T ss_pred CcCchhhH-HHhc----CCCCC----EEEeccccc-cCcccceeeEE-cHHHHHhhccCcccccccccccCCCcCHHHHH
Confidence 54443221 1111 11122 347899997 66 67999988 7888877642 1234567777776
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhc
Q 019899 213 LLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIA 289 (334)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (334)
++.+.++..+ + ....++++++.+++.+.|+++ ..... ...-|.+..+.+...... .......+...++ ++
T Consensus 334 aa~a~L~~i~---~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~-~~~~~~~~~~~~~-~~ 406 (445)
T PRK09221 334 AGLATLDIYR---E--EDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGA-PGARGYEAFMKCF-EK 406 (445)
T ss_pred HHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEeccccc-ccchHHHHHHHHH-HC
Confidence 6666654322 1 134556677777777777764 22211 112344455555432111 0112346677744 58
Q ss_pred CeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 290 KINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 290 gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
||.+.++ .+.+|++... ++++++++++++|.+++++.
T Consensus 407 Gv~~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 407 GLLVRYT-------GDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred CeEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 9998652 2479999764 69999999999999998763
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=134.45 Aligned_cols=271 Identities=13% Similarity=0.100 Sum_probs=178.7
Q ss_pred EEEecCcHHHHHHHHHHhc-CCCCeEEecCCCCCCh-h-hhhhhccCc-EEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 20 IVLTAGATPAVEILCFCLA-DHGNALLVPSPYYPGF-D-RDIRFRTGV-ELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 20 i~~~~g~~~~~~~~~~~l~-~~gd~vl~~~p~~~~~-~-~~~~~~~g~-~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
++++.++|.++.+++.+++ ++|++|++.. .|..- . +.++ .+|. ++..+.. +.+..+++++++.
T Consensus 61 ~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~-~~g~~~v~~l~~--~~g~~~~~~~ve~--------- 127 (374)
T TIGR01365 61 GIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTK-QLKLPDVRVLEA--EYGKLPDLKKVDF--------- 127 (374)
T ss_pred EEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHH-hcCCCCcEEEcC--CCCCCCCHHHcCC---------
Confidence 5668889999999999998 5888898864 44443 3 5566 7888 4777765 5677889999873
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccccc
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKD 175 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~ 175 (334)
+ +.+.+++..+.||+..| +++++..+ ++.++++|.+-+. +.....+ .+.+++++|..|.
T Consensus 128 -~-~~v~~vhnETSTGv~np---v~~i~~~~--~~~lliVDavSs~----g~~~l~~----------d~iDv~~tgsQK~ 186 (374)
T TIGR01365 128 -K-NDVVFTWNGTTSGVRVP---NGDFIPAD--REGLTICDATSAA----FAQDLDY----------HKLDVVTFSWQKV 186 (374)
T ss_pred -C-CCEEEecCCCchheecc---cccccccc--CCCcEEEEccchh----cCCCCCh----------hHCcEEEEechhc
Confidence 1 12678888899999999 55544322 5899999988654 2122232 2355778899999
Q ss_pred CCCCCceEEEEeecCHHHHHHHHHhh----------------------cccCCChHHHHHHHHhhCChHHHHH--HHHHH
Q 019899 176 LSLPGFRTGVIYSYNESVLAAAKKLT----------------------RFCSISAPTQRLLISMLSDTKFIQE--YLETN 231 (334)
Q Consensus 176 ~~~~g~r~g~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ 231 (334)
++.|+ .+++++. +++..++.+... ...+.+++...++..++...+++.+ -++.+
T Consensus 187 L~~pp-Gls~v~v-s~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~ 264 (374)
T TIGR01365 187 LGGEG-AHGMLIL-SPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPL 264 (374)
T ss_pred cCCCC-ceEEEEE-CHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHH
Confidence 97554 5788888 666655544210 1123344444444444443333333 37888
Q ss_pred HHHHHHHHHHHHHHHHhCC-CcccCC----CceeEEeeecCCc-CC---CCChhh-HHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 232 KRRIKKLYDSFVAGLKQLG-IRCSES----SAGLYCWADMSGL-IP---SYSEKG-ELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~g-~~~~~~----~~g~~~~~~~~~~-~~---~~~~~~-~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
.++++++++.+++.++++| +.+... .....+.+.++.+ ++ .....+ ..++... ++++||.+.+|..-
T Consensus 265 ~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~i~~G~~~-- 341 (374)
T TIGR01365 265 IARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELIST-LEKEGVAYDIGSYR-- 341 (374)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHH-HHHCCEEEeccccc--
Confidence 9999999999999999998 665542 2333344566443 21 000011 3566666 55679999887753
Q ss_pred CCCCeEEEEec-CCCcccHHHHHHHHHHH
Q 019899 302 IEPGWFRCCFT-SLTHEDIPLVIERIQKV 329 (334)
Q Consensus 302 ~~~~~iRi~~~-~~~~~~l~~~l~~l~~~ 329 (334)
..+..+||+.. .++++|++.+++.|.=+
T Consensus 342 ~~~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 342 DAPSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred cCCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 23578999855 58999999999988644
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-15 Score=134.29 Aligned_cols=279 Identities=16% Similarity=0.141 Sum_probs=173.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcE-------------------EEEEeCCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVE-------------------LIPVHCRSTD 75 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~-------------------v~~v~~~~~~ 75 (334)
.+.+++++++++|+..++.... ....+|+....+|.+......-..|.. +..+|
T Consensus 109 ~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 183 (428)
T PRK12389 109 LEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVP----- 183 (428)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcC-----
Confidence 5789999999999999987642 234678888888877543322022211 11111
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc-chhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF-VSMA 153 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~-~~~~ 153 (334)
..|++.+++.+++. +.++.+|++.......|.+. +.+.++++.++|++||+++|+||++.+| ..+... ....
T Consensus 184 --~~d~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~ 257 (428)
T PRK12389 184 --FNDIEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLL 257 (428)
T ss_pred --CCCHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHh
Confidence 12688888888642 23566566554477778766 5667999999999999999999999876 222211 1111
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-----hhcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-----LTRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
.+ .+| +.+++|.++ .|+++|.+++ ++++.+.+.. +..+++.|++...++.+.++..+ +
T Consensus 258 gv------~PD----ivt~gK~lg-gG~Pi~av~~-~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~---~-- 320 (428)
T PRK12389 258 GV------EPD----LTALGKIIG-GGLPIGAYGG-RKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQ---Q-- 320 (428)
T ss_pred CC------CCC----eeeechhhc-CCCceeEEeE-HHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHh---c--
Confidence 11 122 347899998 8899999988 8888888753 23345678888777777765322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHh----CCCcccC-CCceeEEeeecCCc-CCC------CChhhHHHHHHHHHHhcCeEEcCC
Q 019899 229 ETNKRRIKKLYDSFVAGLKQ----LGIRCSE-SSAGLYCWADMSGL-IPS------YSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~----~g~~~~~-~~~g~~~~~~~~~~-~~~------~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
+...++++++-+++.+.|++ +++.... ...|++ .+.+... ... ........+... +.++||.+.+.
T Consensus 321 ~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~ 398 (428)
T PRK12389 321 EGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKL-MLNQGINLAPS 398 (428)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHH-HHHCCcEeecC
Confidence 12344555556666666654 3432221 223433 3444321 110 011123456666 44589999874
Q ss_pred CCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 297 SACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
. .+.+.+++. .+++|++++++++.+++++
T Consensus 399 ~------~~~~~~~l~-~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 399 K------YEAWFLTTA-HTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred C------CCCeeecCC-CCHHHHHHHHHHHHHHHHh
Confidence 2 122445554 7999999999999999875
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-15 Score=134.02 Aligned_cols=287 Identities=11% Similarity=0.074 Sum_probs=171.5
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChh-hhhhhccCc------------EEEEEeCCCCCC--cc-
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFD-RDIRFRTGV------------ELIPVHCRSTDN--FA- 78 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~-~~~~~~~g~------------~v~~v~~~~~~~--~~- 78 (334)
.+.+++++++++|+..++.... ....+|+....+|.+.. ..+. ..|. .+..+|.++... +.
T Consensus 130 ~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (459)
T PRK06082 130 LNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAIS-VGGEACFRQGMGPLMAGVERIPPAVSYRGAFPD 208 (459)
T ss_pred CCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHh-hcCCcccccCCCCCCCCCEEeCCCcccccccCC
Confidence 4689999999999999887642 23467887777776643 2332 2221 122233211000 00
Q ss_pred c------cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc-h
Q 019899 79 F------SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-S 151 (334)
Q Consensus 79 ~------~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~-~ 151 (334)
. +++.+++.++. .+++.+|++...++..+...+.+.++++.++|++||+++|+||++.++...|..+. .
T Consensus 209 ~~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e 284 (459)
T PRK06082 209 ADGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQ 284 (459)
T ss_pred hhHHHHHHHHHHHHHHhc----CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhH
Confidence 0 13445666643 12565555544366545567778899999999999999999999987654443222 1
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
...+ .+| + .+++|.++ .| +++|.+++ ++++.+.+.. ....++.++++..++.+.++..+ +
T Consensus 285 ~~gv------~PD--i--v~~gKgl~-gG~~P~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~---~-- 347 (459)
T PRK06082 285 AYGI------EPD--I--LCIGKGLG-GGLVPIAAMIT-KDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIE---Q-- 347 (459)
T ss_pred hhCC------CCC--E--EEeccccc-CCCCcceEEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH---h--
Confidence 1111 122 2 24899998 77 58999998 6676544321 11355678888777777665322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCC--ChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 229 ETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSY--SEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
....++++++-+++.+.|+++ ++......-|.++.+++....... .......+...++ ++|+.+.+..
T Consensus 348 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~----- 421 (459)
T PRK06082 348 EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCL-NNGLSFKVSQ----- 421 (459)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHH-hCCCEEEecC-----
Confidence 134455666666666666553 322111223555666664321111 1112335566644 5899987631
Q ss_pred CCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 303 EPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 303 ~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.+.+|++... +++++++++++++.+++.+
T Consensus 422 -~~~i~~~Ppl~it~~eid~~~~~l~~~l~~ 451 (459)
T PRK06082 422 -GNVIQLSPPLIITREELTQALAILEEAIAK 451 (459)
T ss_pred -CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 3679998764 6999999999999998865
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-15 Score=132.23 Aligned_cols=282 Identities=15% Similarity=0.103 Sum_probs=172.1
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhhh-hhhccCc-------------EEEEEeCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDRD-IRFRTGV-------------ELIPVHCRS 73 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~-~~~~~g~-------------~v~~v~~~~ 73 (334)
..+.+++++++++|+..++..... ...+|+....+|.+.... +. ..+. .+..+|.++
T Consensus 99 ~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als-~~~~~~~~~~~~~~~~~~~~~~p~~~ 177 (422)
T PRK05630 99 GLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMS-VCDPEGGMHSLWKGTLPEQIFAPAPP 177 (422)
T ss_pred CcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhc-cCCCcccccccccccCCCCeEcCCCc
Confidence 356899999999999988875421 235788888888764322 22 2121 122333221
Q ss_pred CCCcc-cc----HHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCC
Q 019899 74 TDNFA-FS----ITALDQAFNQARKRGVKVRGILICNP-ANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGN 146 (334)
Q Consensus 74 ~~~~~-~~----~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~ 146 (334)
..... -+ .+.+++.+.+ ++.+|++... +...|.+. |.+.++++.++|++||+++|+||++.++...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~------~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG 251 (422)
T PRK05630 178 VRGSSPQEISEYLRSLELLIDE------TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG 251 (422)
T ss_pred ccCCChHHHHHHHHHHHHHHhh------ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc
Confidence 10000 01 2233333332 6776666642 66778754 56689999999999999999999997764444
Q ss_pred CCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--------hhcccCCChHHHHHHHHh
Q 019899 147 EEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK--------LTRFCSISAPTQRLLISM 217 (334)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 217 (334)
..+. .... +..+| +.+++|.++ .| ..+|++++ ++++.+.+.. +..+++.++....++.+.
T Consensus 252 ~~~a-~~~~----gv~PD----i~t~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aa 320 (422)
T PRK05630 252 ELFA-TLAA----GVTPD----IMCVGKALT-GGFMSFAATLC-TDKVAQLISTPNGGGALMHGPTFMANPLACAVAHAS 320 (422)
T ss_pred hhhH-HHhc----CCCCC----eeeeechhh-cCccccceeec-cHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHH
Confidence 3221 1111 11122 227899996 67 47899998 8888887753 234566788888777777
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC--CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 218 LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE--SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
++..+ + ....++++++.+++.+.|+++ ...... ..-|.+..+++.... +...+... +.++|+.+.
T Consensus 321 L~~l~---~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~------~~~~~~~~-~~~~Gl~~~ 388 (422)
T PRK05630 321 LEIIE---T--GMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPV------DMEEATQA-AVDHGVWLR 388 (422)
T ss_pred HHHHH---h--CcHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcc------cHHHHHHH-HHHCCeEEE
Confidence 65432 1 122345555566666666543 111111 112666667775321 13456666 445899986
Q ss_pred CCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 295 PGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 295 ~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
+. .+.+|+..+- ++++++++++++|.++++..+
T Consensus 389 ~~-------g~~l~~~PpL~it~~~i~~~~~~l~~al~~~~ 422 (422)
T PRK05630 389 PF-------GRLVYVMPPYITTSEQIAQICAALAAAVKAKQ 422 (422)
T ss_pred ec-------CCEEEEECCccCCHHHHHHHHHHHHHHHhccC
Confidence 52 1478988764 699999999999999987653
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-15 Score=145.12 Aligned_cols=297 Identities=12% Similarity=0.096 Sum_probs=184.0
Q ss_pred hhhhhhhhcCCCCCCCCcEEEec-CcHHHHHHHHHHh----cCCCC----eEEecCCCCCChhhhhhhccCcEEEEEeCC
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTA-GATPAVEILCFCL----ADHGN----ALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~-g~~~~~~~~~~~l----~~~gd----~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~ 72 (334)
.+|+.+..| . +++.+.. ++++|....+.++ .++|+ +|+++...|++....+. ..|.+++.++++
T Consensus 548 q~~l~eltG----~--d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~-~~G~~vv~v~~d 620 (954)
T PRK05367 548 EAWLAEITG----Y--DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAV-MAGMKVVVVACD 620 (954)
T ss_pred HHHHHHHHC----C--CCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHH-HCCCEEEEECCC
Confidence 356666555 3 3555555 4555553333232 24554 69999999998888888 899999999984
Q ss_pred CCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
.+..+|+++|++++++. ..++.+|++++|++-.+...| +++|+++|+++|+++++|.++..... .+
T Consensus 621 --~~G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~------~l 686 (954)
T PRK05367 621 --ENGNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQV------GL 686 (954)
T ss_pred --CCCCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhcc------CC
Confidence 33589999999998752 125778889998876554577 99999999999999999999853211 11
Q ss_pred hhhhhccccCCCcEEEEecccccCCC----CCceEEEEeecCHHHHHHHHHhh--------cccCCC--hHHHH--H--H
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSL----PGFRTGVIYSYNESVLAAAKKLT--------RFCSIS--APTQR--L--L 214 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~----~g~r~g~i~~~~~~~~~~~~~~~--------~~~~~~--~~~~~--~--~ 214 (334)
..... .+.+++..+++|+++. .|..+|.+.+ .+.+...+.... .....+ +..+. + +
T Consensus 687 ~~pg~-----~GADi~~~s~HK~f~~P~G~GGPg~G~l~v-r~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a 760 (954)
T PRK05367 687 ARPGD-----IGADVSHLNLHKTFCIPHGGGGPGVGPIGV-KAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPIS 760 (954)
T ss_pred CChhh-----cCCCEEEecCcccCCCCcCCCCCceEEEee-cccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHH
Confidence 11111 5677888999999852 2445788887 444443332111 001111 11111 1 1
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeE--EeeecCCcCCCCChhhHHHHHHHHHHhcCe
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLY--CWADMSGLIPSYSEKGELELWDKLLNIAKI 291 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi 291 (334)
..++.. +..+.+.+..++.-.+++++.++|++. .+.+..+.+.++ +.++++.... .......++.++| .++|+
T Consensus 761 ~~yi~~--~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~-~~g~~~~di~krL-~d~G~ 836 (954)
T PRK05367 761 WMYIRM--MGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKE-STGITVDDIAKRL-IDYGF 836 (954)
T ss_pred HHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccc-cCCCCHHHHHHHH-HHCCC
Confidence 112111 113445566666668899999999774 333333222111 2344432211 1112346788885 56899
Q ss_pred EEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 292 NVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 292 ~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.... ..|. .++.+|++++. .+++|+++++++|..+.++
T Consensus 837 ~~~t-~~~p--v~~~l~i~ptE~~s~~elDr~~~al~~i~~e 875 (954)
T PRK05367 837 HAPT-MSFP--VAGTLMVEPTESESKAELDRFCDAMIAIRAE 875 (954)
T ss_pred eEee-cCCc--cCCEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence 8643 2232 36789999885 5899999999999888764
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-15 Score=141.11 Aligned_cols=294 Identities=11% Similarity=0.060 Sum_probs=171.4
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc----ccc-----HHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF----AFS-----ITALDQAF 88 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~----~~~-----~~~l~~~l 88 (334)
..-++++|+|.++.+++.+++.+||+||++..||.+...++. +.|+.+++++... +.+ .++ .+.++++|
T Consensus 212 ~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLi-lsga~PVYl~P~r-n~~Gi~g~I~~~~~~~e~i~~~i 289 (714)
T PRK15400 212 RSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMM-MSDVTPIYFRPTR-NAYGILGGIPQSEFQHATIAKRV 289 (714)
T ss_pred cEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-HcCCeEEEecccc-cccCCccCCCccccCHHHHHHHH
Confidence 468899999999999999999999999999999999999988 9999999987543 233 234 78899888
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcEE
Q 019899 89 NQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRVH 167 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 167 (334)
++.... +++.++++++|+. .|.+++ ++.|.+.|+.++ +++||||+... |. +.+.+..++..- ..+.+.++
T Consensus 290 ~~~p~a-k~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~-p~~~~~sam~~g-a~~~~~i~ 360 (714)
T PRK15400 290 KETPNA-TWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFS-PIYEGKCGMSGG-RVEGKVIY 360 (714)
T ss_pred HhCccc-cCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccchhhhccC-cccCCcChhhcC-CCCCCceE
Confidence 764211 2344799999954 799999 888888888777 68999998743 32 122212222110 00124558
Q ss_pred EEecccccCCCCCceEEEEeecCHHH-HHHHHHhhcccCCChHHHHHHHHhhCChHHHHH-HHHHHHHHHHHHHHHHHHH
Q 019899 168 IIYGLSKDLSLPGFRTGVIYSYNESV-LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQE-YLETNKRRIKKLYDSFVAG 245 (334)
Q Consensus 168 ~~~s~sK~~~~~g~r~g~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 245 (334)
++.|.||.+ +++..+..+.-+..+ .+++...-..+..++++-..++.+-....+++. .-.+..+...+....+++.
T Consensus 361 vtQStHKtL--~alTQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~ 438 (714)
T PRK15400 361 ETQSTHKLL--AAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKE 438 (714)
T ss_pred EEEchhhcc--cchhHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 889999998 455455433211111 233333222222222222222222111112221 2234444555555666666
Q ss_pred HHhC-C------CcccCCC-----------------------------ceeEEeeecCCcC-CC---CChhhHHHHHHHH
Q 019899 246 LKQL-G------IRCSESS-----------------------------AGLYCWADMSGLI-PS---YSEKGELELWDKL 285 (334)
Q Consensus 246 l~~~-g------~~~~~~~-----------------------------~g~~~~~~~~~~~-~~---~~~~~~~~~~~~l 285 (334)
+.+. + |.+..++ ...=+.+..|+.. ++ ..+..+..+.+.
T Consensus 439 l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~- 517 (714)
T PRK15400 439 IKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKY- 517 (714)
T ss_pred HHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHH-
Confidence 6554 2 3322211 0011222232210 00 012234455566
Q ss_pred HHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 286 LNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 286 l~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
|+++||.+.-.. ..++-+-++. .++++++.+++.|.++-+
T Consensus 518 L~e~gI~~E~~d------~~~iLfl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 518 LDEHGIVVEKTG------PYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred HHHcCCEEEecC------CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 677899876422 2344444442 788999999999987633
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=133.49 Aligned_cols=295 Identities=14% Similarity=0.091 Sum_probs=174.8
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc------C--CCCeEEecCCCCCChhhhhhhccCc------------EEEEEeCC
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA------D--HGNALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCR 72 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~------~--~gd~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~ 72 (334)
.+.+.+.+++++++++|+..++.... . ...+|+....+|.+......-..|. .+..++.+
T Consensus 108 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p 187 (466)
T PRK07036 108 APGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSP 187 (466)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCC
Confidence 33335689999999999999887642 1 1367888888887654322101111 13333332
Q ss_pred CCC--Ccccc--------HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccc
Q 019899 73 STD--NFAFS--------ITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGG 141 (334)
Q Consensus 73 ~~~--~~~~~--------~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~ 141 (334)
... ....+ ++.+++.+.. ....++.+|++...+...|.+. +.+.++++.++|++||+++|+||++.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tG 265 (466)
T PRK07036 188 NPYRRPAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTG 265 (466)
T ss_pred cccccccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC
Confidence 110 11111 2334444432 1224567666665577778765 566799999999999999999999987
Q ss_pred cccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh---------hcccCCChHHH
Q 019899 142 SIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL---------TRFCSISAPTQ 211 (334)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~---------~~~~~~~~~~~ 211 (334)
|...|..+ ...... +..+| +.+++|.++ .| +++|.+++ ++++.+.+... ..+++.+++..
T Consensus 266 fGRtG~~~-~~~~~~---gv~PD----ivt~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~ 335 (466)
T PRK07036 266 FGRLGHFF-ASEAVF---GIQPD----IITFAKGLT-SGYQPLGAVII-SERLLDVISGPNAKGNVFTHGFTYSGHPVAC 335 (466)
T ss_pred CCcCchhh-hhhhhc---CCCCC----EEEEccccc-cCccccEEEEE-cHHHHHHHhcccCcCcccccCCCCCCCHHHH
Confidence 65444321 111010 11122 346899998 78 58999998 88888877531 22456788888
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCceeEEeeecCCcCCCC-----ChhhHHHHHH
Q 019899 212 RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSY-----SEKGELELWD 283 (334)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~ 283 (334)
.++.+.++..+ + ....++++++-+++.+.|+++ ++......-|.++.+++....... .......+..
T Consensus 336 aaa~a~Le~i~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~ 410 (466)
T PRK07036 336 AAALKNIEIME---R--EGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDR 410 (466)
T ss_pred HHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHH
Confidence 77777765322 1 234445555556666666543 221111223556667664321110 0112234566
Q ss_pred HHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 284 KLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 284 ~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
. +.++||.+.|.. +.+|++... ++++|++++++++.+++++
T Consensus 411 ~-~~~~Gvl~~~~~-------~~~~l~Ppl~it~~~id~~~~~l~~al~~ 452 (466)
T PRK07036 411 H-CQERGLLVRPLE-------HLCVLSPPLIITRAQIDEIVAILRAAIEE 452 (466)
T ss_pred H-HHHCCcEEeecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 6 445899987631 357888663 5999999999999888865
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-14 Score=132.53 Aligned_cols=290 Identities=14% Similarity=0.078 Sum_probs=176.3
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRSTD 75 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~~ 75 (334)
..+.+++++++++|+..++.... ....+|+....+|.+.........|. .+..+|.++..
T Consensus 106 ~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~ 185 (466)
T PRK07030 106 GLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCY 185 (466)
T ss_pred CcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCcc
Confidence 44689999999999999887652 12357888888887654322102221 12333321100
Q ss_pred --Cc--------cccHHHHHHHHHHHHHcCCceeEEEEeC-CCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccc
Q 019899 76 --NF--------AFSITALDQAFNQARKRGVKVRGILICN-PANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSI 143 (334)
Q Consensus 76 --~~--------~~~~~~l~~~l~~~~~~~~~~~~i~~~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~ 143 (334)
.. .-+++.+++.++. .+.++.+|++.. .+...|.+ .+.+.++++.++|++||+++|.||++.+|.
T Consensus 186 ~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfG 262 (466)
T PRK07030 186 LRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFG 262 (466)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcC
Confidence 00 1134556666653 234667666664 25666774 456779999999999999999999998875
Q ss_pred cCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH---------hhcccCCChHHHHH
Q 019899 144 FGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK---------LTRFCSISAPTQRL 213 (334)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 213 (334)
..|..+.. .. .+..--+.+++|.++ .| +++|.++. ++++.+.+.. +..+++.|+....+
T Consensus 263 RtG~~~a~-~~--------~gv~PDiv~~gKgl~-gG~~Pi~av~~-~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aa 331 (466)
T PRK07030 263 RTGTMFAC-EQ--------AGIRPDFLCLSKALT-GGYLPLAAVLT-TDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAA 331 (466)
T ss_pred ccccchHH-Hh--------cCCCCCEEeeehhcc-CCcccceEEEe-cHHHHHHHhcccccccccccCCCCCCCHHHHHH
Confidence 55542221 11 111112335789998 88 59999998 8888877742 23456678888887
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCceeEEeeecCCcCCCC-----ChhhHHHHHHHH
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSY-----SEKGELELWDKL 285 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~l 285 (334)
+.+.++..+ + +...++.+++-+++.+.|+++ +.-.....-|+++.+++....... .......+...+
T Consensus 332 a~a~L~~i~--~---~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~ 406 (466)
T PRK07030 332 ALATLDIFE--Q---DNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHA 406 (466)
T ss_pred HHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHH
Confidence 777765432 1 223445555566666666553 211111223566666664321110 001123566664
Q ss_pred HHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 286 LNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 286 l~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+ ++|+.+.+. .+.+|+..+. ++++|++.+++++.+++++
T Consensus 407 ~-~~Gvl~~~~-------g~~i~~~Ppl~it~~eid~~~~~l~~al~~ 446 (466)
T PRK07030 407 L-ERGALLRPL-------GSVVYFLPPYVITPEQIDFLAEVASEGIDI 446 (466)
T ss_pred H-HCCeEEEec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 4 589998752 1468887664 6999999999999999876
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-14 Score=131.93 Aligned_cols=300 Identities=13% Similarity=0.117 Sum_probs=179.6
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC-------C-CCeEEecCCCCCChhhhhhhccCc------------EE
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD-------H-GNALLVPSPYYPGFDRDIRFRTGV------------EL 66 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~-------~-gd~vl~~~p~~~~~~~~~~~~~g~------------~v 66 (334)
+++...++...+.+++++++++|+..++..... + ..+|+....+|.+......-..|. .+
T Consensus 106 e~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~ 185 (460)
T PRK06916 106 EKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEA 185 (460)
T ss_pred HHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCC
Confidence 334333433346899999999999998875431 2 367888888887754322202221 12
Q ss_pred EEEeCCCCCC--cc--------ccHHHHHHHHHHHHHcCCceeEEEEeC-CCCCcccC-CCHHHHHHHHHHHHhcCcEEE
Q 019899 67 IPVHCRSTDN--FA--------FSITALDQAFNQARKRGVKVRGILICN-PANPVGNI-IPRETLYELLDFAREKNIHVI 134 (334)
Q Consensus 67 ~~v~~~~~~~--~~--------~~~~~l~~~l~~~~~~~~~~~~i~~~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~vi 134 (334)
..+|.++... +. -+++.+++.++. ++.++.+|++.. .+...|.+ .|.+.++++.++|++||+++|
T Consensus 186 ~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI 262 (460)
T PRK06916 186 IKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFI 262 (460)
T ss_pred EEeCCCcccccccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 3333211000 00 134556666652 234677677665 36667876 477789999999999999999
Q ss_pred EeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH---------hhccc
Q 019899 135 SDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK---------LTRFC 204 (334)
Q Consensus 135 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~---------~~~~~ 204 (334)
.||++.++...|..+. .... +..+| +.+++|.++ .| +++|.+++ ++++.+.+.. +...+
T Consensus 263 ~DEV~TG~GRtG~~~a-~~~~----gv~PD----iv~~gK~l~-gG~~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~~T~ 331 (460)
T PRK06916 263 TDEVATGFGRTGKMFA-CEHE----NVTPD----IMTAGKGLT-GGYLPIAITVT-TDEIYNAFYGDYEEQKTFFHGHSY 331 (460)
T ss_pred eechhhCCCcCchhhH-HHhc----CCCCC----eeeeehhhh-cCccccceeee-cHHHHHHhhccccccCccccCCCC
Confidence 9999987644443221 1111 11122 336899998 78 59999998 7888877642 22345
Q ss_pred CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc--CCCceeEEeeecCCcCCCC----Ch-h
Q 019899 205 SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCS--ESSAGLYCWADMSGLIPSY----SE-K 276 (334)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~--~~~~g~~~~~~~~~~~~~~----~~-~ 276 (334)
+.++....++.+.++..+ + ....++++++-+++.+.|+++ ..... ...-|.+..+++....... .. .
T Consensus 332 ~gnpl~~aaa~a~l~~l~---~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~ 406 (460)
T PRK06916 332 TGNPLGCAVALANLELYE---K--TNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTER 406 (460)
T ss_pred CCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhh
Confidence 678888777777764322 1 223455566666666666654 11111 1122445555554321110 00 1
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 277 GELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 277 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
....+...+ .++||.+.|.. +.+|+..+. ++++|++++++++.+++++.
T Consensus 407 ~~~~i~~~~-~~~Gvl~~~~g-------~~l~~~Ppl~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 407 VGVQVCKRS-RELGMLTRPLG-------NTIVFMPPLASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred HHHHHHHHH-HHCCeEEEecC-------CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 123566664 45899997631 468887653 69999999999999998763
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-14 Score=131.33 Aligned_cols=297 Identities=12% Similarity=0.084 Sum_probs=173.6
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRSTD 75 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~~ 75 (334)
..+.+++++++++|+..++.... ....+|+....+|.+......-..|. .+..++..+..
T Consensus 89 ~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~ 168 (443)
T PRK07483 89 GLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAY 168 (443)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccc
Confidence 34689999999999998877542 12356888777777654321102111 11223221100
Q ss_pred Ccc---c--------cHHHHHHHHHHHHHcCCceeEEEEeCCCC-CcccC-CCHHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 76 NFA---F--------SITALDQAFNQARKRGVKVRGILICNPAN-PVGNI-IPRETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 76 ~~~---~--------~~~~l~~~l~~~~~~~~~~~~i~~~~p~n-ptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
... . .++++++++.. ....++.+|++...+. ..|.+ .+.+.++.+.++|++||+++|.||++.+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 246 (443)
T PRK07483 169 REQRAGESDEAYGQRLADELEAKILE--LGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGM 246 (443)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHh--cCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCc
Confidence 000 0 12445554432 1123566566553353 34654 46778999999999999999999999877
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCc-eEEEEeecCHHHHHHHHH------hhcccCCChHHHHHHH
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF-RTGVIYSYNESVLAAAKK------LTRFCSISAPTQRLLI 215 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~-r~g~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 215 (334)
...|..+. .... +..+| +.+++|.++ .|+ ++|.+++ ++++.+.+.. +..+++.|++...++.
T Consensus 247 GRtG~~~a-~~~~----gv~PD----iv~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~ 315 (443)
T PRK07483 247 GRTGTLFA-CEED----GVAPD----LVTIAKGLG-AGYQPIGAVLA-SDRIYDAIADGSGFFQHGHTYLGHATACAAAL 315 (443)
T ss_pred ccCcHHHH-Hhhc----CCCCC----eeeehhhhc-cCccccEEEEE-cHHHHHHHhcCCCccccCCCCCCCHHHHHHHH
Confidence 54443221 1111 11122 345799998 885 9999998 8888887753 2345678888888777
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccCCCceeEEeeecCCcCCCC-----ChhhHHHHHHHHH
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPSY-----SEKGELELWDKLL 286 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~ll 286 (334)
+.++..+ + ....++.+++-+++.+.|++ +++......-|.++.+++....... .......+...++
T Consensus 316 a~l~~i~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (443)
T PRK07483 316 AVQRVIA--E---DGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAM 390 (443)
T ss_pred HHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHH
Confidence 7775432 1 22344455555666666654 2321111223555556653321100 0112235666645
Q ss_pred HhcCeEEcCCCCc--CCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 287 NIAKINVTPGSAC--HCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 287 ~~~gi~v~~g~~~--~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+ +|+.+.+.... +. .++.+|+...- ++++++++++++|.+++++
T Consensus 391 ~-~Gll~~~~~~~~~~~-~~~~l~~~PpL~it~~eid~~~~~l~~~l~~ 437 (443)
T PRK07483 391 A-RGLMVYPMGGTIDGV-RGDHVLLAPPFIITAAQIDEIVERLGDAIDA 437 (443)
T ss_pred H-CCcEEEecCccccCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 4 89999764211 11 13679998764 6999999999999999875
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-15 Score=131.05 Aligned_cols=264 Identities=14% Similarity=0.097 Sum_probs=168.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhc-CCC-CeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCCCCccccHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLA-DHG-NALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~-~~g-d~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~~~~~~~~~ 82 (334)
.+.+++++++++|+..++.... .+| ++|+....+|.+.........+. .+..+|. .|.+
T Consensus 81 ~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-------~d~~ 153 (364)
T PRK04013 81 YEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-------NDVE 153 (364)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-------CCHH
Confidence 4689999999999999988762 234 78999988888754332201111 1222222 2577
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
.+++.+.+ ++.+|++...+...|... |.+.++++.++|++||+++|+||++.++ ..|..+ ..... +.
T Consensus 154 ~l~~~i~~------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~-a~~~~----gv 221 (364)
T PRK04013 154 AAKEAITK------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFL-AIEHY----KV 221 (364)
T ss_pred HHHHHhcC------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchh-HHHhc----CC
Confidence 88887764 778777775566666644 6678999999999999999999999876 444322 11111 11
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (334)
.++ +.+++|.++ .|+++|.++. ++++.. ..+..+++.|+.+..++.+.++..+ ++. +.++.++.
T Consensus 222 ~PD----iv~~gK~lg-gG~P~~a~~~-~~~~~~--~~~~~T~~gnp~~~aaa~a~l~~i~--~~~---l~~~~~~~--- 285 (364)
T PRK04013 222 EPD----IVTMGKGIG-NGVPVSLTLT-NFDVER--GKHGSTFGGNPLACKAVAVTLRILR--RER---LVEKAGEK--- 285 (364)
T ss_pred CCC----EEEeccccc-CCceeEEEEe-cccccC--CCcCCCCCcCHHHHHHHHHHHHHHH--hcc---HHHHHHHH---
Confidence 122 345799998 7899999998 545421 1244566788888888877775432 111 11122111
Q ss_pred HHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHH
Q 019899 242 FVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIP 320 (334)
Q Consensus 242 ~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~ 320 (334)
+ +.+..-.+.-+. .-|.++.+++..+ ...+...++ ++|+.+.+.. .+.+|+..+- +++++++
T Consensus 286 l-~~l~~~~v~~vR-G~Gl~~gve~~~~--------~~~i~~~~~-~~Gll~~~~g------~~vlr~~Ppl~it~~~i~ 348 (364)
T PRK04013 286 F-IEIKGERVVTTR-GRGLMIGIVLKKP--------VGKYVEELQ-NRGYLVHTAG------QRVIRLLPPLIISKDTME 348 (364)
T ss_pred H-HHhccCcceeee-eCcEEEEEEeCCc--------HHHHHHHHH-hCCcEEeeCC------CCEEEEeCCcccCHHHHH
Confidence 1 222211111112 2366666777532 245667744 4899986532 3679998774 6999999
Q ss_pred HHHHHHHHHHHH
Q 019899 321 LVIERIQKVAET 332 (334)
Q Consensus 321 ~~l~~l~~~~~~ 332 (334)
+++++|.+++++
T Consensus 349 ~~~~~l~~~l~~ 360 (364)
T PRK04013 349 EAKSAIEGVIND 360 (364)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-17 Score=140.79 Aligned_cols=225 Identities=18% Similarity=0.217 Sum_probs=145.7
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh--hhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD--IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~--~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
.+..+++.++|.++.+++.+++++++.|++..++|....+. .....|.+++.++. ++...+++++|++.++....+
T Consensus 44 ~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~--~~~G~l~~~~l~~~~~~~~~h 121 (290)
T PF01212_consen 44 KEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEELSGAKLIPLPS--DDDGKLTPEDLEAAIEEHGAH 121 (290)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBE--CTGTBB-HHHHHHHHHHHTGT
T ss_pred CCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHhcCcEEEECCC--cccCCCCHHHHHHHhhhcccc
Confidence 45667999999999999999999999999999987644442 22258999999995 232689999999999987555
Q ss_pred CCceeEEEEeCCCCC-cccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 95 GVKVRGILICNPANP-VGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 95 ~~~~~~i~~~~p~np-tG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
..++++|.+++|+|. .|++++.+++++|.++|++||++|+.|.+=-.... .....++.++. ...+.+..|++
T Consensus 122 ~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~-~~~~~~~~e~~------~~~D~v~~~~t 194 (290)
T PF01212_consen 122 HPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAA-AALGVSLAEIA------AGADSVSFGGT 194 (290)
T ss_dssp SGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHH-CHHHHHHHHHH------TTSSEEEEETT
T ss_pred CCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhh-hcccccHHHHh------hhCCEEEEEEE
Confidence 568999999999874 59999999999999999999999999987110000 00112344443 34556666999
Q ss_pred ccCCCCCceEEEEeecCHHHHHHHHHhhcccC----CChHHHH---HHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS----ISAPTQR---LLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (334)
|.+++++ |.+++.++++++.........+ ....... .....+... +.+ ..+..+-.++.+.+.+.|
T Consensus 195 K~~g~~~---Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l---~~~-~~~~~~~~~~A~~La~~l 267 (290)
T PF01212_consen 195 KNGGAPG---GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRAL---ELW-LERARHANAMAKRLAAGL 267 (290)
T ss_dssp STT-SSS---EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHE---ECS-HHHHHCHHHHHHCHHHCH
T ss_pred ccccccc---ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHHHHHH---Hhh-HHHHHHHHHHHHHHHHHH
Confidence 9998765 5555448886555544332221 1111111 000111111 111 234455667788888899
Q ss_pred HhCCCcccCCC
Q 019899 247 KQLGIRCSESS 257 (334)
Q Consensus 247 ~~~g~~~~~~~ 257 (334)
+..+..+..+.
T Consensus 268 ~~~~~~~~~~~ 278 (290)
T PF01212_consen 268 EALGGVLPRPV 278 (290)
T ss_dssp HEECEEEETTS
T ss_pred HHCCCcccCCC
Confidence 88777655444
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-14 Score=127.19 Aligned_cols=302 Identities=17% Similarity=0.214 Sum_probs=195.7
Q ss_pred CCcEEEecCcHHHHHHHHHHhcC-CCCeEEecCC-----CCCCh---hhhhhhccCcEEEEEeCC--------CCCCccc
Q 019899 17 PSQIVLTAGATPAVEILCFCLAD-HGNALLVPSP-----YYPGF---DRDIRFRTGVELIPVHCR--------STDNFAF 79 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~-~gd~vl~~~p-----~~~~~---~~~~~~~~g~~v~~v~~~--------~~~~~~~ 79 (334)
.+.+++|..++.+..+++..+++ +||.+.+..+ ....+ ..... ..|..++.++.+ .+....+
T Consensus 89 ~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~-l~G~~~~~l~~~ea~~~~~~~~fkG~~ 167 (467)
T TIGR02617 89 YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ-INGCTARNVYTKEAFDTGVRYDFKGNF 167 (467)
T ss_pred CceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHH-HcCceeecccchhhcccccCCCCCCCc
Confidence 45688999999999999999988 7887775543 21112 22344 678887776432 2334579
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCC-CcccCCCHHHHHHHHHHHHhcCcEEEEeccc-ccccc------CCCCcch
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPAN-PVGNIIPRETLYELLDFAREKNIHVISDEIY-GGSIF------GNEEFVS 151 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~n-ptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~-~~~~~------~~~~~~~ 151 (334)
|++.++++|++... .++..+...-.+| -.|+++|.+.++++.++|++||+.++.|.+= ....+ .+..-.+
T Consensus 168 dl~~le~~I~~~g~--~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~s 245 (467)
T TIGR02617 168 DLEGLERGIEEVGP--NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWS 245 (467)
T ss_pred CHHHHHHHHhhcCC--CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCC
Confidence 99999999986411 1222222222233 5799999999999999999999999999861 11011 0112234
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCC-CceEEEEeecCH---HHHHHHHH-------hhcccCCChHHHHHHHHhhCC
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLP-GFRTGVIYSYNE---SVLAAAKK-------LTRFCSISAPTQRLLISMLSD 220 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~-g~r~g~i~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~ 220 (334)
+.++..+ +-...+.+..|+||.++.| | |++..+++ ++.+.++. +.++++.+..-+.+++.-|.+
T Consensus 246 i~eI~rE--~~~~aDsvt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e 320 (467)
T TIGR02617 246 IEQITRE--TYKYADMLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_pred HHHHHHH--hhccCCEEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhh
Confidence 4444321 1123344556899999866 3 56666666 44444433 234456777777777766655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeEEc-CCC
Q 019899 221 TKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKINVT-PGS 297 (334)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~-~g~ 297 (334)
.- -++++..+..+ .++|.+.|.+.|+.++. .+|.-++++..+... ......+..++.+|..+.||... -|+
T Consensus 321 ~~-~~~yl~~ri~q----v~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~ 394 (467)
T TIGR02617 321 GM-NLDWLAYRINQ----VQYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGS 394 (467)
T ss_pred cc-cHHHHHHHHHH----HHHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecc
Confidence 31 24455544444 47899999999999988 889888887554322 12345667899999999999633 344
Q ss_pred Cc-CCC----C-----CCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 298 AC-HCI----E-----PGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 298 ~~-~~~----~-----~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
.. +-. . -.-+|+.+.. .|.+.++.+.+++..+.++
T Consensus 395 ~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 395 LLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred eecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 31 111 0 1468999985 4999999999999988765
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-14 Score=135.86 Aligned_cols=293 Identities=10% Similarity=0.053 Sum_probs=169.1
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc----ccH-----HHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA----FSI-----TALDQAF 88 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~----~~~-----~~l~~~l 88 (334)
..-+++||+|.++.+++.+++.+||+||++..||.+...++. +.|+.+++++... +.++ ++. +.+++++
T Consensus 212 ~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLi-lsga~PVYl~P~~-n~~Gi~g~I~~~~~~~e~I~~~i 289 (713)
T PRK15399 212 QSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLM-MSDVVPIWLKPTR-NALGILGGIPRREFTRDSIEEKV 289 (713)
T ss_pred cEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-HcCCeeEEecccc-cccCCcCCCChhhccHHHHHHHH
Confidence 568899999999999999999999999999999999999988 9999999987532 2332 344 8888888
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEE-EEeccccccc-cCCCCcchhhhhhhccccCCCcE
Q 019899 89 NQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHV-ISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRV 166 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~v-i~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 166 (334)
++.... ++++++++++|+. .|.+++ +++|.+.| |+.+ ++||||+... |. +.+.+...+... .-....+
T Consensus 290 ~~~p~~-~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~-p~~~~~sam~~~-~~aD~~i 359 (713)
T PRK15399 290 AATTQA-QWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFH-PIYQGKSGMSGE-RVPGKVI 359 (713)
T ss_pred HhCCCc-CCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhhhhcC-cccCCcChhhCC-CCCCeee
Confidence 764211 2457899999954 799999 77777777 5666 6999998743 21 112222222110 0002334
Q ss_pred EEEecccccCCCCCceEEEEeecCHHH-HHHHHHhhcccCCChHHHHHHHHhhCChHHHHH-HHHHHHHHHHHHHHHHHH
Q 019899 167 HIIYGLSKDLSLPGFRTGVIYSYNESV-LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQE-YLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 167 ~~~~s~sK~~~~~g~r~g~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 244 (334)
+++.|.||.+ +++..+..+.-+..+ .+++...-..+..++++-..++.+-.....++. .-.+..+...+....+++
T Consensus 360 ~~tQStHKtL--~alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~ 437 (713)
T PRK15399 360 FETQSTHKML--AAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRK 437 (713)
T ss_pred eeeeehhccc--cccchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 5578999998 555555544322222 234433322222222222222222111112221 223444455555556666
Q ss_pred HHHhC-C------CcccCCC-----------------------------ceeEEeeecCCcCCC----CChhhHHHHHHH
Q 019899 245 GLKQL-G------IRCSESS-----------------------------AGLYCWADMSGLIPS----YSEKGELELWDK 284 (334)
Q Consensus 245 ~l~~~-g------~~~~~~~-----------------------------~g~~~~~~~~~~~~~----~~~~~~~~~~~~ 284 (334)
.+.+. + +++..++ ...=+.+..|+.... ..+..+..+.+.
T Consensus 438 ~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~ 517 (713)
T PRK15399 438 EVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKF 517 (713)
T ss_pred HHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHH
Confidence 66543 1 2222210 011122222221000 112344556666
Q ss_pred HHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 285 LLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 285 ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
|+++||.+.-.. ..++-+-++. .++++++.+++.|.++-+
T Consensus 518 -L~e~gI~~E~~d------~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 518 -LDERGIVVEKTG------PYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred -HHHcCCEEEecC------CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 677899886433 2344444442 688999999999987743
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-14 Score=131.29 Aligned_cols=294 Identities=13% Similarity=0.096 Sum_probs=170.5
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcC-------C-CCeEEecCCCCCChhh-hhhhccCcE------------EEEEeC
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLAD-------H-GNALLVPSPYYPGFDR-DIRFRTGVE------------LIPVHC 71 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~-------~-gd~vl~~~p~~~~~~~-~~~~~~g~~------------v~~v~~ 71 (334)
.+.+.+.+++++++++|+..++..... + ..+|+....+|.+..- .+. ..|.. +..++.
T Consensus 107 ~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s-~~g~~~~~~~~~~~~~~~~~~~~ 185 (456)
T PRK07480 107 APPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGAS-LGGMKYMHEQGDLPIPGIVHIDQ 185 (456)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhh-ccCChhhhcccCCCCCCCeecCC
Confidence 333456899999999999998875421 2 3568877777776432 222 22211 112221
Q ss_pred CCCC--Ccccc--------HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEecccc
Q 019899 72 RSTD--NFAFS--------ITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYG 140 (334)
Q Consensus 72 ~~~~--~~~~~--------~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~ 140 (334)
+... .+..+ .+.+++.+.. ....++.+|++...+...|.+. +.+.++.+.++|++||+++|+||++.
T Consensus 186 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~t 263 (456)
T PRK07480 186 PYWFGEGGDMTPEEFGLAAARQLEAKILE--LGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVIC 263 (456)
T ss_pred CcccccccCCChHHHHHHHHHHHHHHHHh--cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 1000 00011 2444443322 1123566666654466678865 55679999999999999999999998
Q ss_pred ccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCc-eEEEEeecCHHHHHHHHH------hhcccCCChHHHHH
Q 019899 141 GSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF-RTGVIYSYNESVLAAAKK------LTRFCSISAPTQRL 213 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~-r~g~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 213 (334)
+|...|..+.. ... +..+| +.+++|.++ .|. ++|.+++ ++++.+.+.. +..+++.|+++..+
T Consensus 264 GfGRtG~~~a~-~~~----gv~PD----iv~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aa 332 (456)
T PRK07480 264 GFGRTGEWFGS-QHF----GIKPD----LMTIAKGLT-SGYIPMGAVGV-GDRVAEVLIEEGGEFNHGFTYSGHPVAAAV 332 (456)
T ss_pred CCCcCcchhhh-hhc----CCCCC----eeeeehhhc-cCCccceEEEE-cHHHHHHHhcCCCCcccCCCCCcCHHHHHH
Confidence 76544432211 111 11122 346899998 784 8999998 7888887731 23456788888888
Q ss_pred HHHhhCChHHHHHHHHHHHHHH-HHHHHHHHHHHHh---CCCcccCCCceeEEeeecCCcCCCCC----h-hhHHHHHHH
Q 019899 214 LISMLSDTKFIQEYLETNKRRI-KKLYDSFVAGLKQ---LGIRCSESSAGLYCWADMSGLIPSYS----E-KGELELWDK 284 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~---~g~~~~~~~~g~~~~~~~~~~~~~~~----~-~~~~~~~~~ 284 (334)
+.+.++..+ + ....++. +++-+++.+.|++ +++......-|++..+++.+...... . .....+...
T Consensus 333 a~a~L~~l~--~---~~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~ 407 (456)
T PRK07480 333 ALANLRILR--D---EGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDH 407 (456)
T ss_pred HHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHH
Confidence 888875432 1 1222333 2344444455544 33211112235555566632211100 0 011234455
Q ss_pred HHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 285 LLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 285 ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.++||.+.+. .+.+|++... ++++|++++++++.+++++.
T Consensus 408 -~~~~Gll~~~~-------~~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 449 (456)
T PRK07480 408 -CFANGLIMRAV-------GDRMIISPPLVITHAEIDELVEKARKALDAT 449 (456)
T ss_pred -HHHCCcEEeec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44589998652 2468998774 59999999999999998753
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-14 Score=129.63 Aligned_cols=291 Identities=14% Similarity=0.051 Sum_probs=169.2
Q ss_pred EEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC------------cEEEEEeCCCCCCc------cc
Q 019899 20 IVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG------------VELIPVHCRSTDNF------AF 79 (334)
Q Consensus 20 i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~~~~~~~~------~~ 79 (334)
+++++++++|+..++.... ....+|+....+|.+......-..+ ..+..+|.++.... .-
T Consensus 124 ~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (459)
T PRK06931 124 QFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEA 203 (459)
T ss_pred EEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchh
Confidence 4566899999999887642 3456788888888776543220111 12333443211100 01
Q ss_pred cHHHHHHHHHHHHH----cCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 80 SITALDQAFNQARK----RGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 80 ~~~~l~~~l~~~~~----~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
+.+.+++.+++... ...++.+|++...+...|.+. +.+.++.+.++|++||+++|.||++.+|...|..+. ...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a-~~~ 282 (459)
T PRK06931 204 GVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFA-FEH 282 (459)
T ss_pred HHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHH-hhh
Confidence 23444433333221 223466565554466667755 677899999999999999999999988754443221 111
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH--HhhcccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK--KLTRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.+..--+.+++|.++ .|+++|.++. ++++ +.+. .+..+++.|+++..++.+.++..+ + ....
T Consensus 283 --------~gv~PDivt~gK~l~-gG~Pi~av~~-~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~--~---~~l~ 346 (459)
T PRK06931 283 --------AGIEPDIIVMSKAVG-GGLPLAVLGI-KKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILK--E---ENLA 346 (459)
T ss_pred --------cCCCCCEEEeccccc-CCcceeeeee-HHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHH--h---CCHH
Confidence 111122345799998 8899999887 5554 5543 234456788888887777775422 1 1223
Q ss_pred HHHHHHHHHHHHHHHh----CCCcccCCCceeEEeeecCCcCCC--------CChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 233 RRIKKLYDSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPS--------YSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
++.+++-+++.+.|++ +++......-|.++.+++.+.... ....-...+...++ ++|+.+.++...
T Consensus 347 ~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~- 424 (459)
T PRK06931 347 QNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF-ENGLLLERGGRN- 424 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHH-HCCcEEeecCCC-
Confidence 3444444455555544 333222222355555666432110 01112334566644 589998764321
Q ss_pred CCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 301 CIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 301 ~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.+.+|+.++. +++++++++++++.+++++
T Consensus 425 ---~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 425 ---GNVVRLLPPLLITQAECEEFIDRFEQALLA 454 (459)
T ss_pred ---CCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence 4678988774 6999999999999999865
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-14 Score=127.66 Aligned_cols=301 Identities=14% Similarity=0.112 Sum_probs=182.1
Q ss_pred hhhhhcCCCC-CCCCcEEEecCcHHHHHHHHHHhc-------CCC-CeEEecCCCCCC-hhhhhhhccC-----------
Q 019899 5 MSQVLGQAVS-FDPSQIVLTAGATPAVEILCFCLA-------DHG-NALLVPSPYYPG-FDRDIRFRTG----------- 63 (334)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~~~~g~~~~~~~~~~~l~-------~~g-d~vl~~~p~~~~-~~~~~~~~~g----------- 63 (334)
|.+++....+ -+-++|++++|+|++++.++.-.. ++. .+++.-...|.+ ....+. ..|
T Consensus 92 LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~S-v~g~~~~~~~~~~~ 170 (449)
T COG0161 92 LAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMS-VGGPVALRHAFYDP 170 (449)
T ss_pred HHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchhee-ccCchhhhhhhccc
Confidence 3444444444 347799999999999999976542 232 347777777754 222222 222
Q ss_pred --cEEEEEeCCCC------CCcc----ccHHHHHHHHHHHHHcCCceeEEEEeCC-C-CCcccCCCH-HHHHHHHHHHHh
Q 019899 64 --VELIPVHCRST------DNFA----FSITALDQAFNQARKRGVKVRGILICNP-A-NPVGNIIPR-ETLYELLDFARE 128 (334)
Q Consensus 64 --~~v~~v~~~~~------~~~~----~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~-nptG~~~~~-~~l~~i~~~~~~ 128 (334)
..+..+|.++. +... -..++|++.|... +...-+.++..| . .-+|++++. ..++++.++|++
T Consensus 171 ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~---g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~k 247 (449)
T COG0161 171 LLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEH---GPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK 247 (449)
T ss_pred cccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhc---CcccEEEEEecccccccCCcccCChHHHHHHHHHHHH
Confidence 12223333221 0011 2244555555543 423334555556 4 448886654 579999999999
Q ss_pred cCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-------h
Q 019899 129 KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-------T 201 (334)
Q Consensus 129 ~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-------~ 201 (334)
||+++|.||+-.+|...|+.+..-. .+..--+-+++|.++..=+++|.+++ ++++.+.+..- .
T Consensus 248 y~ILlI~DEV~tGFGRTG~~FA~e~---------~gi~PDi~~~aKGLT~GY~Pl~a~l~-~~~I~~~~~~~~~~~f~HG 317 (449)
T COG0161 248 YGILLIADEVATGFGRTGKMFACEH---------AGIVPDILCLAKGLTGGYLPLSAVLT-SDRIYEAFSDGDAGAFMHG 317 (449)
T ss_pred cCcEEEeecceeCCCcCchhhhhhh---------cCCCCCeeeecccccccchhhHhHhh-hHHHHHHHhcccCCeeccC
Confidence 9999999999998777665543222 22222344688999633378888888 88888888653 2
Q ss_pred cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCccc--CCCceeEEeeecCCcCCCCC---
Q 019899 202 RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL--GIRCS--ESSAGLYCWADMSGLIPSYS--- 274 (334)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~--~~~~g~~~~~~~~~~~~~~~--- 274 (334)
.+|+.|+.+.+++.+-++-.+ + +.+.++.++...++.+.|++. +...+ ...-|++..+++........
T Consensus 318 ~TYsghPlacAaAla~L~i~e---~--e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~ 392 (449)
T COG0161 318 HTYSGNPLACAAALANLDILE---E--EDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFE 392 (449)
T ss_pred CccccCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchh
Confidence 235677777776666654322 1 234445556667777777662 22222 23346777777766544322
Q ss_pred hhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 275 EKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 275 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
......+... +.++|+.++|.. +.+=++... +|+++++++++.+++.+++
T Consensus 393 ~~~~~~~~~~-~~e~Gl~iRp~g-------~~i~~~PPliit~~eid~l~~~l~~al~~ 443 (449)
T COG0161 393 ARVGARVRAA-ALERGLLIRPLG-------DVIYLMPPLIITREEIDELVDALREALDE 443 (449)
T ss_pred hhHHHHHHHH-HHHCCeEEeecC-------CEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 1122334444 666999999963 234455443 6999999999999999875
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=138.90 Aligned_cols=263 Identities=14% Similarity=0.107 Sum_probs=165.8
Q ss_pred CCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHH
Q 019899 41 GNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120 (334)
Q Consensus 41 gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~ 120 (334)
.++|+++.-.|++....+. ..|.+++.++++ .+..+|+++|++.+++. ..++.+|.+++|++-++... +++
T Consensus 591 r~~vLIp~saHgtNpasa~-~~GieVv~Vp~D--~~G~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~e~---~V~ 661 (954)
T PRK12566 591 RDICLIPSSAHGTNPASAQ-MAGMRVVIVECD--PDGNVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVYEE---GIR 661 (954)
T ss_pred CCEEEecccccccCHHHHH-HCCCEEEEeccC--CCCCcCHHHHHHHhhcc---CCCEEEEEEEecCcCceecc---hHH
Confidence 4688999988876666677 789999999985 34489999999999732 13778888888887665544 499
Q ss_pred HHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCC----CceEEEEeecCHHHHHH
Q 019899 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLP----GFRTGVIYSYNESVLAA 196 (334)
Q Consensus 121 ~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~----g~r~g~i~~~~~~~~~~ 196 (334)
+|+++|+++|.+|++|.++.. ....+.... +.+.+++.++++|+++.| |..+|.+.+ .+.+...
T Consensus 662 eI~~iah~~Galv~vDgA~~~------a~~~l~~Pg-----~~GADi~~~s~HKtf~~P~G~GGP~vG~iav-~~~L~pf 729 (954)
T PRK12566 662 EICEVVHQHGGQVYMDGANLN------AQVGLARPA-----DIGADVSHMNLHKTFCIPHGGGGPGMGPIGV-RAHLAPF 729 (954)
T ss_pred HHHHHHHHcCCEEEEEeeChh------hccCCCChh-----hcCCCEEEecCCcccCcCccCCCCccchhhh-hhhhhhh
Confidence 999999999999999998742 111111111 167889999999999623 333444444 4444444
Q ss_pred HHHhhc---------ccC------CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcee
Q 019899 197 AKKLTR---------FCS------ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGL 260 (334)
Q Consensus 197 ~~~~~~---------~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~ 260 (334)
+..... ..+ .+......+..++.... .+ +.+.......+++++.++|.+. ++.+..+.+.+
T Consensus 730 Lp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG--~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~ 806 (954)
T PRK12566 730 VANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMG--PQ-LADASEVAILSANYLANQLGGAFPVLYRGRNERV 806 (954)
T ss_pred ccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHC--HH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCe
Confidence 443210 011 11111222333333222 23 4555555667889999999773 33332222222
Q ss_pred E--EeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 261 Y--CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 261 ~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+ +.+++++... ....+..++.++|+ ++||...- ..|. .++.+|++... .+++|+|++++.|+.+.++
T Consensus 807 ~hEfii~~~~l~~-~~g~~~~dvakRL~-d~Gihapt-~~fP--v~~~LmIepTE~eskeEIDrf~eAL~~I~~e 876 (954)
T PRK12566 807 AHECILDLRPLKA-QTGISEEDVAKRLM-DYGFHAPT-MSFP--VPGTLMVEPTESESKAELDRFVEAMLSIRAE 876 (954)
T ss_pred eeEEEEEcccccc-ccCCCHHHHHHHHH-HCCcEEeE-Eeec--cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 1 2234432211 11234467899977 68997543 3332 36789999885 5899999999999988765
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-14 Score=128.66 Aligned_cols=284 Identities=16% Similarity=0.193 Sum_probs=170.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCCh------hhhhhhccCcEEEEEeCCCCCCcc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF------DRDIRFRTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~------~~~~~~~~g~~v~~v~~~~~~~~~ 78 (334)
+++.++..+++ +..+++++++.|+.+++.. +.+||+|+++...|..+ ...++ ..|.+++.++.. + .
T Consensus 127 le~~lA~l~ga--e~alvv~sg~aAi~l~l~~-l~~GdeVIvs~~e~v~~ggs~~i~~~~~-~~G~~~~~v~~~--~--~ 198 (454)
T TIGR00474 127 VEGLLCELTGA--EDALVVNNNAAAVLLALNT-LAKGKEVIVSRGELVEIGGSFRIPDVME-QSGAKLVEVGTT--N--R 198 (454)
T ss_pred HHHHHHHHhCC--CcEEEECCHHHHHHHHHHH-hCCcCEEEECCChhhhhcchhhHHHHHH-HcCCEEEEeCCC--C--C
Confidence 34445554543 4567788888899888855 57999999998764322 23445 679999998752 1 3
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCc--c--cCCCHHHHHHHHHHHHhcCcEEEEeccccccccC---CC-Ccc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPV--G--NIIPRETLYELLDFAREKNIHVISDEIYGGSIFG---NE-EFV 150 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~npt--G--~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~---~~-~~~ 150 (334)
.+++++++++++ +++++++++++|++ | ...| +++|+++|+++|+++++|.+.+.+.-. +- ...
T Consensus 199 ~~l~dle~aI~~------~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p 269 (454)
T TIGR00474 199 THLKDYEDAITE------NTALLLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEP 269 (454)
T ss_pred CCHHHHHHhcCc------CCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCc
Confidence 578999999976 89999999999984 6 4677 999999999999999999764332100 00 011
Q ss_pred hhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHH----HHHHHHhhCChH-H
Q 019899 151 SMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPT----QRLLISMLSDTK-F 223 (334)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~l~~~~-~ 223 (334)
....... .+.+++++|.+|++|.+ ..|++++ ++++++.++... ......-.. ...+..++...+ +
T Consensus 270 ~~~~~~~-----~GaDiv~fSg~K~LgGp--~~G~i~g-~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~ 341 (454)
T TIGR00474 270 TVQEVIA-----AGVDLVTFSGDKLLGGP--QAGIIVG-KKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKAL 341 (454)
T ss_pred ccccHhH-----cCCCEEEecCccccCCC--eEEEEEE-CHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhh
Confidence 1122222 57779999999998634 4788888 677777665321 111111111 122222222111 1
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHhC---CC--cccCCC----c---------eeEEeeecCCcCCCCChhhHHHH
Q 019899 224 I----QEYLETNKRRIKKLYDSFVAGLKQL---GI--RCSESS----A---------GLYCWADMSGLIPSYSEKGELEL 281 (334)
Q Consensus 224 ~----~~~~~~~~~~~~~~~~~~~~~l~~~---g~--~~~~~~----~---------g~~~~~~~~~~~~~~~~~~~~~~ 281 (334)
. ...+....+++.++++.+.+.|++. ++ ++.... + ++.+.++... ....++
T Consensus 342 ~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~-------~~~~~l 414 (454)
T TIGR00474 342 EKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDG-------LSAEKL 414 (454)
T ss_pred hhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCC-------CCHHHH
Confidence 0 1123344456667777888888663 22 222211 1 1222222111 234566
Q ss_pred HHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHH
Q 019899 282 WDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERI 326 (334)
Q Consensus 282 ~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l 326 (334)
..+ |++....|... ..++.+.+.+..+.++|++.++++|
T Consensus 415 ~~~-lr~~~~~ii~r-----~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 415 EAR-LRELPPPIIGR-----IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred HHH-HhcCCCCEEEE-----EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 766 66555444321 2356677877767888988888776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=129.07 Aligned_cols=245 Identities=19% Similarity=0.223 Sum_probs=160.8
Q ss_pred hhhhhhhhcCCCCC-----CCCcEEEecCcHHHHHHHHHHhcC--------CC------CeEEecCCCCCChhhhhhhcc
Q 019899 2 AGFMSQVLGQAVSF-----DPSQIVLTAGATPAVEILCFCLAD--------HG------NALLVPSPYYPGFDRDIRFRT 62 (334)
Q Consensus 2 ~~~~~~~~~~~~~~-----~~~~i~~~~g~~~~~~~~~~~l~~--------~g------d~vl~~~p~~~~~~~~~~~~~ 62 (334)
.+|+.+.++ ++. +...=++|+|+|+++..++.+..+ .| -.|++++-+|++...++. .+
T Consensus 85 i~~l~~l~g--~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~-~l 161 (373)
T PF00282_consen 85 IRWLADLFG--LPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAAR-IL 161 (373)
T ss_dssp HHHHHHHTT--GSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHH-HT
T ss_pred HHHHHHHhC--CcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcc-ee
Confidence 356676666 331 124578899999999887765421 11 257777779999999999 99
Q ss_pred CcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 63 GVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 63 g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
|..++.||++ .++.+|+++|+++|++...+|..+-+|+.+.+++.+|.+-| +++|.++|+++++|+++|.+|++.
T Consensus 162 Glg~~~I~~~--~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~---l~~i~~i~~~~~~wlHVDaA~gg~ 236 (373)
T PF00282_consen 162 GLGVRKIPTD--EDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP---LEEIADICEKYNIWLHVDAAYGGS 236 (373)
T ss_dssp TSEEEEE-BB--TTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S---HHHHHHHHHHCT-EEEEEETTGGG
T ss_pred eeEEEEecCC--cchhhhHHHhhhhhcccccccccceeeeccCCCcccccccC---HHHHhhhccccceeeeeccccccc
Confidence 9999999984 46689999999999987777766767888888999999988 999999999999999999999983
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-hcc------------------
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-TRF------------------ 203 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-~~~------------------ 203 (334)
.+-.+.......-. ...+=+..++||+++ .....|+++.+++......... ..+
T Consensus 237 ~~~~~~~~~~~~gi------~~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~t 309 (373)
T PF00282_consen 237 ALLSPEYRHLLFGI------ERADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYT 309 (373)
T ss_dssp GGGHCTTGGGGTTG------GGESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGS
T ss_pred cccccccccccccc------ccccccccchhhhhc-CCccceeEEeecccchHHHhccChhhhccccccccccccccccc
Confidence 32111111111111 122234558999997 6678999999777654432111 010
Q ss_pred cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC-ceeEE
Q 019899 204 CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESS-AGLYC 262 (334)
Q Consensus 204 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~-~g~~~ 262 (334)
...+. ...++..++.-..+..+.+.+..++..+.++++.+.|++. ++++..+. -+.++
T Consensus 310 l~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vc 369 (373)
T PF00282_consen 310 LQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVC 369 (373)
T ss_dssp SSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEE
T ss_pred ccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEE
Confidence 11222 4444444443333345667888888999999999999998 57876543 34433
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-14 Score=135.42 Aligned_cols=264 Identities=16% Similarity=0.121 Sum_probs=169.8
Q ss_pred CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHH
Q 019899 40 HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETL 119 (334)
Q Consensus 40 ~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l 119 (334)
+.++|+++.-.|+.....+. ..|.+++.++++ .+..+|+++|++++++ ++.++++|++++|+| +|.+.+ ++
T Consensus 577 ~R~~vlip~saHgtnPasa~-~~G~~Vv~V~~d--~~G~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~--~I 647 (939)
T TIGR00461 577 HRNICLIPVSAHGTNPASAA-MAGMQVVPVNCD--QDGNIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEP--TI 647 (939)
T ss_pred CCCEEEEEccccCcCHHHHH-HCCCEEEEeccC--CCCCcCHHHHHHHHhh---cCCceEEEEEEeCCc-Cceecc--cH
Confidence 34689999999988877788 889999999983 4558999999999975 234789999999998 677643 39
Q ss_pred HHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCC----CCCceEEEEeecCHHHHH
Q 019899 120 YELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLS----LPGFRTGVIYSYNESVLA 195 (334)
Q Consensus 120 ~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~----~~g~r~g~i~~~~~~~~~ 195 (334)
++|+++|+++|.++++|.++... ...+.... +.+.++++.|.+|+++ ..|..+|.+.+ .+.+..
T Consensus 648 ~eI~~iah~~G~~v~VDgAq~~a------l~~l~~Pg-----~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~v-r~~L~~ 715 (939)
T TIGR00461 648 QHACDIVHSFGGQVYLDGANMNA------QVGLTSPG-----DLGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KSHLIP 715 (939)
T ss_pred HHHHHHHHHcCCEEEEEecChhh------CCCCCCcc-----ccCCCEEEecCCccCCCCCCCCCCCeEEEEE-hhhchh
Confidence 99999999999999999997431 11111111 1677889999999875 34556799988 444433
Q ss_pred HHHHh------------h------cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-
Q 019899 196 AAKKL------------T------RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSES- 256 (334)
Q Consensus 196 ~~~~~------------~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~- 256 (334)
.+... + .....+......+..+++.. ..+.+.+..+..-.+++++.++|++ ++++.-+
T Consensus 716 ~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~l--G~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~ 792 (939)
T TIGR00461 716 FLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMM--GNEGLPKASVVAILNANYMATRLKD-HYPILFVG 792 (939)
T ss_pred hcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccC
Confidence 33100 0 00111111112222222221 1344567777778899999999987 5554432
Q ss_pred Ccee-E--EeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 257 SAGL-Y--CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 257 ~~g~-~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
..+. + +.+++++. ......+..++.++|++ +|+.... ..|.. .+.+-+.++. .+.+|||++++.+.++-++
T Consensus 793 ~~~~~~hEfv~~~~~~-~~~~g~~~~dIakrL~d-~G~hapt-~~~pv--~g~lmiepTE~eskeelD~f~~al~~I~~e 867 (939)
T TIGR00461 793 TLKHVAHECILDLRPL-KAKTGIEAIDVAKRLQD-YGFHAPT-LSFPV--PGTLMVEPTESESLEELDRFCDAMIAIKEE 867 (939)
T ss_pred CCCceeEEEEEeccch-hhhcCCCHHHHHHHHHh-CCeeccc-cCCcc--CCeEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 1222 1 23455532 11222355789999655 8987533 32322 3345555553 6889999999999887654
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-13 Score=125.03 Aligned_cols=281 Identities=14% Similarity=0.123 Sum_probs=163.5
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--------CC------CCeEEecCCCCCChhhhhhhccCcEE-E----------EEe
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--------DH------GNALLVPSPYYPGFDRDIRFRTGVEL-I----------PVH 70 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--------~~------gd~vl~~~p~~~~~~~~~~~~~g~~v-~----------~v~ 70 (334)
..+.+++++++++|+..++.... .+ ..+|+....+|.+......-..|... . .++
T Consensus 109 ~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~ 188 (443)
T PRK08297 109 ELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRID 188 (443)
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccC
Confidence 34689999999999999987652 01 25788888888775443220222110 0 011
Q ss_pred CCCC----CCcc---------ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEe
Q 019899 71 CRST----DNFA---------FSITALDQAFNQARKRGVKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISD 136 (334)
Q Consensus 71 ~~~~----~~~~---------~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D 136 (334)
.... .+.. -+++++++.+.+ +..++.+|++...+...|.+ .|.+.++++.++|++||+++|.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~D 265 (443)
T PRK08297 189 NPKLRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFD 265 (443)
T ss_pred CCCCCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 1000 0000 123444555543 23467766665446666765 56778999999999999999999
Q ss_pred ccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH-------HhhcccCCChH
Q 019899 137 EIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK-------KLTRFCSISAP 209 (334)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~-------~~~~~~~~~~~ 209 (334)
|++.+|...|..+.. ..+ +..+| +.+++|.++ +|.++. .+++.+... .+..+++.|++
T Consensus 266 EV~tGfGRtG~~~a~-~~~----gv~PD----iv~~gK~l~-----~~a~l~-~~~i~~~~~~~~~~~~~~~~T~~gnpl 330 (443)
T PRK08297 266 EVQTGVGLTGTAWAY-QQL----GVRPD----IVAFGKKTQ-----VCGIMA-GRRVDEVEDNVFAVSSRINSTWGGNLV 330 (443)
T ss_pred chhhccCccchHHHH-Hhc----CCCCC----EEEeccccc-----ccceec-chHHHHhhhhhccCccccCCCCCccHH
Confidence 999876554432211 111 11122 225789884 233334 233322211 13345667888
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCc--ccCCCceeEEeeecCCcCCCCChhhHHHHHH
Q 019899 210 TQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIR--CSESSAGLYCWADMSGLIPSYSEKGELELWD 283 (334)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 283 (334)
+..++.+.++..+ + ....++++++-+++.+.|++. +.- .+.. .|.++.++++.. .....+..
T Consensus 331 ~~aaa~a~L~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg-~G~~~~i~~~~~------~~~~~~~~ 398 (443)
T PRK08297 331 DMVRARRILEVIE--E---DGLVENAARQGEYLLARLEELAAEFPAVVSNVRG-RGLMCAFDLPTT------ADRDEVIR 398 (443)
T ss_pred HHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeec-cceEEEEEecCH------HHHHHHHH
Confidence 8777777765322 1 123334444455555555442 211 1223 366677777532 12346777
Q ss_pred HHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 284 KLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 284 ~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.++ ++||.+.|+. .+.+|++.+. ++++++++++++|.+++++.
T Consensus 399 ~l~-~~Gvl~~~~~------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 399 RLW-EEGVLVLPCG------ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred HHH-HCCEEEecCC------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 755 5899998743 2468887664 69999999999999998764
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-14 Score=126.19 Aligned_cols=152 Identities=11% Similarity=0.115 Sum_probs=119.0
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCC----ccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDN----FAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~----~~~~~~~l~~~l~~~~~ 93 (334)
..-+++||+|.++.+++.+++.+||.||++.++|.+....+- +.|+.++++....+.. .+++.+.+++++.+.
T Consensus 87 ~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~gli-laGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~-- 163 (557)
T COG1982 87 HTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLI-LAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAH-- 163 (557)
T ss_pred ceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHH-HcCCceEEecCCCCccccccCCCCHHHHHHHHHhC--
Confidence 478999999999999999999999999999999999999987 8999998887644332 357999999987764
Q ss_pred cCCce-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 94 RGVKV-RGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 94 ~~~~~-~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
... |++++++|+. .|.+++ ++++.+++...++|+.+|+++....-....... +....+.+++..|.
T Consensus 164 --~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~-------~~~~~~~~~~tqS~ 230 (557)
T COG1982 164 --PDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPE-------SALNGGADFVTQST 230 (557)
T ss_pred --hhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCcccccccccCcc-------hhhhcCceEEEech
Confidence 233 7889998875 699999 999999999999999999998653321111111 12236888999999
Q ss_pred cccCCCCCceEEEEe
Q 019899 173 SKDLSLPGFRTGVIY 187 (334)
Q Consensus 173 sK~~~~~g~r~g~i~ 187 (334)
+|.++ ++..+..+
T Consensus 231 HK~l~--alSQaS~i 243 (557)
T COG1982 231 HKLLA--ALSQASMI 243 (557)
T ss_pred hhhhh--hhhhhHHH
Confidence 99884 44444443
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-13 Score=113.01 Aligned_cols=296 Identities=14% Similarity=0.109 Sum_probs=183.4
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHHh---cCCCCeEEecCCCCCCh-hhhhhhccCcEEEEEeCC-----------
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFCL---ADHGNALLVPSPYYPGF-DRDIRFRTGVELIPVHCR----------- 72 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l---~~~gd~vl~~~p~~~~~-~~~~~~~~g~~v~~v~~~----------- 72 (334)
.+...++-+-..++++|++++|+.+++.-. .+.- .++--..+|.+. ...+. +.|......+++
T Consensus 100 ~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~-diIa~r~~YHG~t~~t~g-lt~~~~~k~~~~~~~~~~~~~~~ 177 (442)
T KOG1404|consen 100 ALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNL-DIIARRNSYHGNTLYTLG-LTGLSPWKQNFPGVASGVHHTMN 177 (442)
T ss_pred HHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCc-eEEEeeccccCCchhhcc-cccCCcccccCCCCCCcccccCC
Confidence 344445666678999999999999887654 2333 455555555543 33333 333333322211
Q ss_pred -C--CCCccc-----cHHHHHHHHHHHHHc-C-CceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccc
Q 019899 73 -S--TDNFAF-----SITALDQAFNQARKR-G-VKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGG 141 (334)
Q Consensus 73 -~--~~~~~~-----~~~~l~~~l~~~~~~-~-~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~ 141 (334)
+ ..-+.- ..+.+.+.+++.... + ..+.+++...-+...|++ ++...+++..++|+++|.++|.||++.+
T Consensus 178 Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtG 257 (442)
T KOG1404|consen 178 PDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTG 257 (442)
T ss_pred CCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhc
Confidence 0 000111 144444544444321 2 234545555447666774 5666899999999999999999999998
Q ss_pred cccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh---cccCCChHHHHHHHHhh
Q 019899 142 SIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT---RFCSISAPTQRLLISML 218 (334)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l 218 (334)
|...| ++..+.. .+.+-.+.|++|.+| +|+++|.++. .+++.+.+.+.. ..++.++....+..+.+
T Consensus 258 fGRtG----~~wgfe~-----h~v~PDIvTmAKgiG-nG~Pl~AVvt-t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL 326 (442)
T KOG1404|consen 258 FGRTG----HMWGFES-----HGVVPDIVTMAKGIG-NGFPLGAVVT-TPEIADVLNQKSSHFNTYGGNPVACAVGLAVL 326 (442)
T ss_pred ccccc----ccccccc-----cCCCccHHHHHhhcc-CCCcceeeec-CHHHHHHHHhccccccccCCCchhHHHHHHHH
Confidence 77665 3333332 566667789999999 9999999998 999999997655 33567888887777777
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcccCC--CceeEEeeecCCcC-C--CCChhhHHHHHHHHHHhcCe
Q 019899 219 SDTKFIQEYLETNKRRIKKLYDSFVAGLKQL--GIRCSES--SAGLYCWADMSGLI-P--SYSEKGELELWDKLLNIAKI 291 (334)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~--~~g~~~~~~~~~~~-~--~~~~~~~~~~~~~ll~~~gi 291 (334)
+-.+ ++ +++++..+.-.+|.+.|.+. ..++... .-|.++-+++-... . .........+.+. .++.|+
T Consensus 327 ~Vik--ee---~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~-cke~Gv 400 (442)
T KOG1404|consen 327 KVIK--EE---NLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQ-CKELGV 400 (442)
T ss_pred HHHH--HH---hHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHH-HHHhCe
Confidence 5433 33 34444555567777777664 3444322 23555556553322 1 1111222234455 677999
Q ss_pred EEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHH
Q 019899 292 NVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERI 326 (334)
Q Consensus 292 ~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l 326 (334)
.+--|..+| +.+||...- +|++|++.+++..
T Consensus 401 lvg~g~i~G----~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 401 LVGKGGIHG----NVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred eeecccccc----eEEEecCCeeccHHHHHHHHHHH
Confidence 996666554 489998663 7999997777744
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=114.11 Aligned_cols=277 Identities=17% Similarity=0.157 Sum_probs=181.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhc------C--C-CC-eEEecCCCCCChhhhhhhccCcE--------------EEEEeCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA------D--H-GN-ALLVPSPYYPGFDRDIRFRTGVE--------------LIPVHCR 72 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~------~--~-gd-~vl~~~p~~~~~~~~~~~~~g~~--------------v~~v~~~ 72 (334)
-+.+..++.+.+|...++...- + | .. +|+....+|++-.-.+- .++-+ +..+|.
T Consensus 116 ~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ai-s~s~d~ds~~~fgp~~P~~~~~v~Y- 193 (427)
T KOG1402|consen 116 YDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAI-SLSTDPDSWDGFGPFLPGVVDKVPY- 193 (427)
T ss_pred cceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeE-EecCCcchhhccCCCCCCcceeecc-
Confidence 5678899999999988876542 1 2 22 34444444443221111 11111 223332
Q ss_pred CCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
-|.++|+.++++ +++.++++..-+...|+++|.+ .+++..++|.+|++++|.||++.++..+|.-..-
T Consensus 194 ------~d~eale~~l~~-----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~ 262 (427)
T KOG1402|consen 194 ------GDAEALEVALKS-----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLAC 262 (427)
T ss_pred ------CCHHHHHHHhcC-----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEe
Confidence 278999999987 3677555554488999988766 6999999999999999999999998877764432
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
-.+-. .++.++ +.|.++..=.+++.+++ +++++-.++. +.+.++.|++...++.++++-.. + +
T Consensus 263 d~env-----~PDivi----lgKalSGG~~Pvsavl~-~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~--e---e 327 (427)
T KOG1402|consen 263 DYENV-----RPDIVI----LGKALSGGVYPVSAVLA-DDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIV--E---E 327 (427)
T ss_pred ehhhc-----CCCeEE----EeccccCCeeeeEEEEe-cHHHHhccCCCccccccCCChHHHHHHHHHHHHHH--H---H
Confidence 22211 134333 56777523367899998 8888877764 45667889999888887775432 2 3
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--C----cccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQLG--I----RCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE 303 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~g--~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~ 303 (334)
++.++....-..++..|.++. + ..+.. -|++..+.+.... .+..++-+++-. ++++|+...|-+
T Consensus 328 kL~era~~lG~~l~~~L~~l~~~~p~~v~~VRG-rGl~~ai~i~~~~--~~~~~aw~~cl~-lk~~g~LAkptH------ 397 (427)
T KOG1402|consen 328 KLVERAAKLGEILRDQLNKLQKKFPHVVKEVRG-RGLLNAIVINPSK--TSGQDAWDVCLA-LKENGLLAKPTH------ 397 (427)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhheeec-cceEEEEEecccc--ccchhHHHHHHc-ccccccccCCCC------
Confidence 444555555667777777652 2 12222 3566555554221 122355667777 677999998865
Q ss_pred CCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 304 PGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 304 ~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
.+.||+...- ++++|+++.++++.+.+.
T Consensus 398 ~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 398 GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 4589999764 699999999999988764
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=125.00 Aligned_cols=273 Identities=12% Similarity=0.146 Sum_probs=151.6
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEec-CCCCCChhhh---hh-hccCc------EEEEEeCCCCCCccccHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVP-SPYYPGFDRD---IR-FRTGV------ELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~-~p~~~~~~~~---~~-~~~g~------~v~~v~~~~~~~~~~~~~~ 83 (334)
.+.+++++++++|+..++.... ....+|+.. ...|.+.... .. ...|. .+..++ ..|+++
T Consensus 104 ~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~d~~~ 176 (431)
T PRK06209 104 ADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR-------YNDIAS 176 (431)
T ss_pred cceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC-------CCCHHH
Confidence 3689999999999999987542 223455544 2333221110 00 00111 011111 237899
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
++++++.. ..++.+|++ .|. .|...+.+.++++.++|++||+++|+||++.++.+.+........+. +
T Consensus 177 l~~~l~~~---~~~~aavi~-Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~------P 244 (431)
T PRK06209 177 LEALFEDH---PGRIACVIL-EPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIV------P 244 (431)
T ss_pred HHHHHHhC---CCCEEEEEE-ccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCC------c
Confidence 99988642 224554444 452 34467788899999999999999999999876644221111111111 2
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHH--HHH--------hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAA--AKK--------LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
+ +.+++|.+| .|+.+|++++ ++++.+. +.. +...++.++....++.+.++..+ + ....+
T Consensus 245 D----i~t~gK~lg-gG~p~~av~~-~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~---~--~~~~~ 313 (431)
T PRK06209 245 D----LSCFGKALG-NGFAVSALAG-KREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYR---D--EDVIE 313 (431)
T ss_pred c----eeeehhhhc-CCcccEEEEE-HHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHh---c--cCHHH
Confidence 2 367899998 7889999998 7788776 311 12234455666666655554322 1 12344
Q ss_pred HHHHHHHHHHHHHHh----CCCccc-CCCceeEEeeecC-CcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 234 RIKKLYDSFVAGLKQ----LGIRCS-ESSAGLYCWADMS-GLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~----~g~~~~-~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
+++++-+++.+.|++ +++... ...+.+....-+. .............+...+++ +||.+.| +
T Consensus 314 ~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~p~-----------l 381 (431)
T PRK06209 314 RLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIR-RGVLMPS-----------L 381 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHH-CCccccc-----------c
Confidence 444555555555544 344321 1122222211111 11000011112245666444 7997632 4
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHH
Q 019899 308 RCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 308 Ri~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
+++.. .++++++++++++.+++++
T Consensus 382 ~is~~-ht~~dId~~l~~l~~~l~~ 405 (431)
T PRK06209 382 VVSYA-HGDADIERTIDAVHGALGV 405 (431)
T ss_pred ccccc-CCHHHHHHHHHHHHHHHHH
Confidence 55543 7999999999999998865
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=113.29 Aligned_cols=283 Identities=14% Similarity=0.098 Sum_probs=188.4
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChh-----hhhhhccCcEEEEEeCCCC
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFD-----RDIRFRTGVELIPVHCRST 74 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~-----~~~~~~~g~~v~~v~~~~~ 74 (334)
.+.+...++..++..+++++++.+++-.++.++.+.+ ++|++|++++-...+.. ..+. ..+.. + +
T Consensus 78 p~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~-~~~~~---~----~ 149 (407)
T COG3844 78 PERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLAD-LLGIG---Y----D 149 (407)
T ss_pred hhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhh-hhccc---c----c
Confidence 3456677888899999999999999999999888764 45888888875433322 2222 23322 1 1
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
-...+.++++++++++ .+.++++++.+.-||+.++ +.+|.++++++|++++.|-+|+.... +..+.
T Consensus 150 ~~~~~~P~~~~~~~~d------d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGav----p~~Lh- 215 (407)
T COG3844 150 LEGVIAPRALEEAITD------DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAV----PVDLH- 215 (407)
T ss_pred ceeeeChHHHHHhhcc------ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCc----ceeec-
Confidence 2224567789999987 8888999999999999999 99999999999999999999986332 22222
Q ss_pred hhhccccCCCcEEEEecccccC-CCCCceEEEEeecCHHHHHHHH-Hhhcc---------------------c---CCCh
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAK-KLTRF---------------------C---SISA 208 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~-~~~~~---------------------~---~~~~ 208 (334)
..+.++.|+|..|.+ |.||-. +++.. .+...+... ..+.. | +.+.
T Consensus 216 -------~~gaDfaigcsyKYLNgGPGap-a~l~v-~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V 286 (407)
T COG3844 216 -------AAGADFAIGCSYKYLNGGPGAP-AGLFV-APRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPV 286 (407)
T ss_pred -------ccCCCeeeeeeceeccCCCCCc-eeEEe-ccccccccccccccccCCCCcchhhhccCcCccccceeeCCcch
Confidence 167789999999999 335644 44444 233222211 11111 1 1222
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCc----eeEEeeecCCcCCCCChhhHHH
Q 019899 209 PTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSA----GLYCWADMSGLIPSYSEKGELE 280 (334)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~ 280 (334)
.+..++...|.-.. .-.+.+++++......++.+.++.. ++++..|.. |-.+.+..|. ..+
T Consensus 287 ~s~aal~~aLDifa--~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~---------~~~ 355 (407)
T COG3844 287 LSLAALEGALDIFA--DVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH---------GYQ 355 (407)
T ss_pred hhhHHHhhhhhhhh--hcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc---------HHH
Confidence 33333333332211 1225777888888888888888775 566555432 3445455553 367
Q ss_pred HHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHHc
Q 019899 281 LWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 281 ~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.+. |.++||..-- -.++.+|+.+.. .+-+|+=.+++.|.+++++.
T Consensus 356 V~qa-Li~rGVigD~------R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 356 VMQA-LIDRGVIGDF------REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred HHHH-HHHcCccccc------cCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 8888 5558987421 137889999885 48899999999999999764
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=125.20 Aligned_cols=280 Identities=13% Similarity=0.087 Sum_probs=163.3
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcC--------------------------C---CCeEEecCCCCCChhhhhhhccCc--
Q 019899 16 DPSQIVLTAGATPAVEILCFCLAD--------------------------H---GNALLVPSPYYPGFDRDIRFRTGV-- 64 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~--------------------------~---gd~vl~~~p~~~~~~~~~~~~~g~-- 64 (334)
+.+.+++++++++|+..++..... + ..+|+....+|.+......-..+.
T Consensus 121 ~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~ 200 (464)
T TIGR00699 121 GQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKP 200 (464)
T ss_pred CcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcc
Confidence 346899999999999998876520 0 126888888887654432202221
Q ss_pred ---------EEEEEeCCCC-C--C---------ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHH
Q 019899 65 ---------ELIPVHCRST-D--N---------FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYEL 122 (334)
Q Consensus 65 ---------~v~~v~~~~~-~--~---------~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i 122 (334)
.+..+|.++. . . ..-+++.+++++++ .+.++.+|++.......|.+. +.+.++++
T Consensus 201 ~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~iAAvI~EPv~g~~G~~~~~~~yl~~l 277 (464)
T TIGR00699 201 IHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK---WHKPVAAIIVEPIQSEGGDNHASPDFFRKL 277 (464)
T ss_pred ccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHh---cCCcEEEEEEeCCCCCCCCcCCCHHHHHHH
Confidence 1122222110 0 0 01145566666653 223567666664477778877 67789999
Q ss_pred HHHHHhcCcEEEEeccccccccCCCCcc-hhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH--H
Q 019899 123 LDFAREKNIHVISDEIYGGSIFGNEEFV-SMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK--K 199 (334)
Q Consensus 123 ~~~~~~~~~~vi~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~--~ 199 (334)
.++|++||+++|+||++.++...|..+. ....+. ..- -+.+++|.++..| +++. ++.+ .... .
T Consensus 278 r~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~------~~P--Di~t~gK~lg~gG----~~~~-~~~~-~~~~~~~ 343 (464)
T TIGR00699 278 RDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLD------DPP--DMVTFSKKFQTAG----YFFH-DPAF-RPNKPYR 343 (464)
T ss_pred HHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCC------CCC--CEEEehhhhccCC----cccc-chhc-cCCCCcc
Confidence 9999999999999999987654443211 111111 011 2356899995244 3333 3221 1101 1
Q ss_pred hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Cc----ccC-CCceeEEeeecCCcCCC
Q 019899 200 LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG--IR----CSE-SSAGLYCWADMSGLIPS 272 (334)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~----~~~-~~~g~~~~~~~~~~~~~ 272 (334)
+..+++.++.+..++.+.++..+ + ....++.+++-+++.+.|+++. .. -+. ...|.++.++++..
T Consensus 344 ~~~T~~gnp~~~aaa~a~L~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~--- 415 (464)
T TIGR00699 344 QFNTWMGDPSRALILREIIQEIK--R---KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE--- 415 (464)
T ss_pred cccCCCCCHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH---
Confidence 33456677777777776664322 1 2334445555556666665531 22 111 13466666777531
Q ss_pred CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 273 YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 273 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
.....+...+++ +|+.+.+. ..+.+||..+. ++++|++.++++|.+++
T Consensus 416 ---~~~~~i~~~~~~-~Gvl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 416 ---AKRDKLLKKARN-NGVNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred ---HHHHHHHHHHHH-CCcEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 123466777555 79998653 13679999775 69999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=134.00 Aligned_cols=273 Identities=16% Similarity=0.130 Sum_probs=176.5
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCC--CCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccc
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADH--GNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~--gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~ 79 (334)
+..++...+++++++-++.++|++.++++.++ .++ +++|++++..|+.+...++. ..|.+++.++....
T Consensus 154 Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~----- 228 (993)
T PLN02414 154 QTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF----- 228 (993)
T ss_pred HHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----
Confidence 34455667899999999999999999888776 343 47899999999998877752 35899999986210
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
+ ... ..+-.+++..| |.+|.+.| +++|+++|+++|+++++ .++.. ....+.+...
T Consensus 229 ~------~~~------~~v~~vlvq~P-~~~G~v~d---v~~I~~~ah~~GaL~iV-aad~l------al~~l~~pge-- 283 (993)
T PLN02414 229 D------YSS------GDVCGVLVQYP-ATDGEVLD---YAEFVKNAHANGVKVVM-ATDLL------ALTMLKPPGE-- 283 (993)
T ss_pred c------ccc------CceEEEEEecC-CCCeEEcC---HHHHHHHHHHcCCEEEE-EECHH------HhcCCCCHhh--
Confidence 0 011 13334444444 45899998 99999999999999999 44322 1122222222
Q ss_pred ccCCCcEEEEecccccC---CCCCceEEEEeecCHHHHHHHH-Hhh-------------------------cccCCChHH
Q 019899 160 EVDKDRVHIIYGLSKDL---SLPGFRTGVIYSYNESVLAAAK-KLT-------------------------RFCSISAPT 210 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~---~~~g~r~g~i~~~~~~~~~~~~-~~~-------------------------~~~~~~~~~ 210 (334)
.+.++++++..|+. |..|.+.|++.+ ++++.+.+. +.- ..++.|..+
T Consensus 284 ---~GADi~vgsgqKwg~P~G~GGP~aGflav-r~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict 359 (993)
T PLN02414 284 ---WGADIVVGSAQRFGVPMGYGGPHAAFLAT-SQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICT 359 (993)
T ss_pred ---ccCcEEEECCCccccCCCCCCCCeeEEEE-CHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhH
Confidence 67889999999987 223456899998 555544332 000 011223323
Q ss_pred HHHHHHhhCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 211 QRLLISMLSDT---KFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 211 ~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
..++.+.+... .+...-+.+..+++..+..++.+.|+..|+++..+.-.-.+.++++. ..++.++| .
T Consensus 360 ~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~~vt~~~~~---------~~~v~~~L-~ 429 (993)
T PLN02414 360 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFDTVKVKCSD---------ADAIADAA-A 429 (993)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcCeEEEecCC---------HHHHHHHH-H
Confidence 33333333211 01123356777888899999999998888877544211123344431 25788885 5
Q ss_pred hcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHH
Q 019899 288 IAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 288 ~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~ 328 (334)
++||.+.... ++.+|+|+.. .|++||+.+++.|..
T Consensus 430 ~~gI~l~~~~------~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 430 KVGINLRVVD------ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred HCCCeeEEec------CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 5899775321 3569999996 599999999999963
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-12 Score=125.36 Aligned_cols=230 Identities=14% Similarity=0.035 Sum_probs=141.0
Q ss_pred HHHHHHHHHHH--HcCCceeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 82 TALDQAFNQAR--KRGVKVRGILICNP-ANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 82 ~~l~~~l~~~~--~~~~~~~~i~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
+.+++.|++.. ..+.++.++++.-. +...|++. +.+.++.+.++|++||+++|.||++.+|...|..+..- .
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e-~--- 642 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWE-L--- 642 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHH-h---
Confidence 44566665322 12345665555542 57778876 56679999999999999999999999887666543211 1
Q ss_pred ccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--------hhcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK--------LTRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
.+..--+.+++|.++ .| +++|.+++ ++++.+.+.. +...|+.++.+..++.+.++..+. ++..
T Consensus 643 -----~gv~PDIi~~gKgLt-gG~~Plaa~l~-~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~-~~~~ 714 (817)
T PLN02974 643 -----LGCKPDIACYAKLLT-GGLVPLAATLA-TEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD-PSTN 714 (817)
T ss_pred -----cCCCCCEEeeccccc-CCCCccEEEEE-cHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHH
Confidence 122223446889998 88 69999999 8899888842 234567888888888777754321 1111
Q ss_pred HHHHHHHHHHHHHHHHHH----HhCCCcccCCCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 229 ETNKRRIKKLYDSFVAGL----KQLGIRCSESSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l----~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
....+...+..+++.+.| .++..-.....-|.++.+++..... ......+..+...++.++||.++|..
T Consensus 715 ~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G----- 789 (817)
T PLN02974 715 PNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG----- 789 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-----
Confidence 223333333334444444 3332111111235666677753211 11112234566775536899998732
Q ss_pred CCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 303 EPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 303 ~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+.+|+.... +++++++++++.|.+.+
T Consensus 790 --nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 790 --NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred --CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 468876654 69999999999998765
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-13 Score=118.57 Aligned_cols=265 Identities=11% Similarity=0.097 Sum_probs=173.7
Q ss_pred EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCC-CCCccccHHHHHHHHHHHHHcCC
Q 019899 20 IVLTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRS-TDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 20 i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~-~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+++..|+|.++.++..+++.+|+++++....+++ ..+.++ .+|...+...... .....+++++++. . .
T Consensus 74 ~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~-~~g~~~~~~~~~~~~~~~~~~~~~~~~--~------~ 144 (365)
T PLN02452 74 LFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAK-KYCKTNVIASGKDEKYTKIPSVSEWEL--T------P 144 (365)
T ss_pred EEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHH-HhCCCcEEEecCCCCCCCCCChHHcCC--C------C
Confidence 5555678999999999999999988887655554 233344 5665333332111 1112356555421 1 2
Q ss_pred ceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccccc
Q 019899 97 KVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKD 175 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~ 175 (334)
+++.+.+++..+.||+. .+ ++++. ++++++|.+.+. +....++.. ++. ...|..|.
T Consensus 145 ~~~~v~~~hnETstGv~~~~---~~~i~------~~~lvVDa~Ss~----g~~pidv~~--------~~v--~~~saqK~ 201 (365)
T PLN02452 145 DAKFVHICANETIHGVEFKD---YPDVG------NVPLVADMSSNF----LSKPVDVSK--------YGV--IYAGAQKN 201 (365)
T ss_pred CCcEEEECCCCCCCcEecCc---ccccC------CCeEEEECCccc----cCcccCHHH--------cCE--EEEecccc
Confidence 67889999999999996 55 44443 389999998765 223334432 333 33599999
Q ss_pred CCCCCceEEEEeecCHHHHHHHHHh--------------hcccCCChHHHHHHHHhhCChHHHHH--HHHHHHHHHHHHH
Q 019899 176 LSLPGFRTGVIYSYNESVLAAAKKL--------------TRFCSISAPTQRLLISMLSDTKFIQE--YLETNKRRIKKLY 239 (334)
Q Consensus 176 ~~~~g~r~g~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 239 (334)
+|++| +|.+++ ++++++++... +.+++++....+++...++ |+.+ .++.+.++.++++
T Consensus 202 lGP~G--l~~v~v-r~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~---~l~~~gGl~~~~~r~~~~a 275 (365)
T PLN02452 202 VGPSG--VTIVII-RKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFE---DLLAQGGLKAMEKRNIRKA 275 (365)
T ss_pred cCCCC--eEEEEE-cHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHH---HHHHccCHHHHHHHHHHHH
Confidence 99777 688888 66666554321 1113445555565555554 3333 3688899999999
Q ss_pred HHHHHHHHhC-CCcc--cCC--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-
Q 019899 240 DSFVAGLKQL-GIRC--SES--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS- 313 (334)
Q Consensus 240 ~~~~~~l~~~-g~~~--~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~- 313 (334)
+++.+.|++. |+.. ..+ ...+.+.+.++.. ....++.+. ++++|+...+|+.. -+.+|+|+-+
T Consensus 276 ~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~------~~~~~f~~~-~~~~g~~~~~G~r~----~gg~R~s~yna 344 (365)
T PLN02452 276 DLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS------ELEAEFVKE-AAKAGMVQLKGHRS----VGGMRASIYNA 344 (365)
T ss_pred HHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc------hhHHHHHHH-HHHCCCcccCCccc----cCceEEECcCC
Confidence 9999999885 6621 111 2344555666653 133567777 77799999998864 1239999764
Q ss_pred CCcccHHHHHHHHHHHHHHc
Q 019899 314 LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~~ 333 (334)
++.++++.+++.++++-+++
T Consensus 345 ~~~~~v~~L~~~m~~f~~~~ 364 (365)
T PLN02452 345 MPLAGVEKLVAFMKDFQAKH 364 (365)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 79999999999999988765
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=112.19 Aligned_cols=301 Identities=17% Similarity=0.108 Sum_probs=179.0
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC------CC--CeEEecCCCCCChh-hhhhhccCcEEEEEeCCC
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD------HG--NALLVPSPYYPGFD-RDIRFRTGVELIPVHCRS 73 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~------~g--d~vl~~~p~~~~~~-~~~~~~~g~~v~~v~~~~ 73 (334)
+.+.+..++. .++.|++.+++|+|+..++....+ +- .+|+....+|.+-. ..+. ..+..-+..|.++
T Consensus 105 ~~l~~~~~~~---~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals-~~~~s~y~~~~~p 180 (433)
T KOG1401|consen 105 EVLSAVLGKG---SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALS-VTGNSKYGLPFDP 180 (433)
T ss_pred HHHHhcccCC---CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHH-hhcccccCCCCCC
Confidence 3344444433 678999999999999998765421 11 24777777776533 3333 3333333332210
Q ss_pred ---C--CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCC
Q 019899 74 ---T--DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNE 147 (334)
Q Consensus 74 ---~--~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~ 147 (334)
+ ...-.|++.+++.++.+ .+.+.++|+...+...|++. +.+=+..|...|+++|+++|.||++.+|...|.
T Consensus 181 ~~p~v~~~~ynd~t~l~k~~~~h---~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~ 257 (433)
T KOG1401|consen 181 IAPDVVTAEYNDSTALEKLFESH---KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGY 257 (433)
T ss_pred CCCceeecccCCHHHHHHHHHhC---CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccch
Confidence 0 00123789999999874 22467777765587788755 455589999999999999999999988766554
Q ss_pred CcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-----hcccCCChHHHHHHHHhhCChH
Q 019899 148 EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTK 222 (334)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~ 222 (334)
. ...+.. +..-.+.++.|.++ .|+++|..++ ++++.+.+..- ...|+.|+++..+....++...
T Consensus 258 ~--~a~e~~-------~~~PDI~t~aK~L~-gGlPigA~~v-~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~ 326 (433)
T KOG1401|consen 258 G--WAQEYF-------GVTPDITTVAKPLG-GGLPIGATGV-RDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELK 326 (433)
T ss_pred H--HHHHHh-------CcCCcceeehhhcc-CCceeEEEee-hHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHc
Confidence 3 222222 12223567899998 8999999998 88998888643 3457788888888777775422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCceeEEeeecCCcCCCC--ChhhHHHHHHHHHHh---cCeEEcCC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSE-SSAGLYCWADMSGLIPSY--SEKGELELWDKLLNI---AKINVTPG 296 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~---~gi~v~~g 296 (334)
. .+++.+..++-+..++.+.+.+.+.+-.+.. -..++++.+.+..+.... .......+...+.+. .|+.+.|
T Consensus 327 ~-~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P- 404 (433)
T KOG1401|consen 327 D-PETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRIAP- 404 (433)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccceEEEec-
Confidence 1 3444555556666666666666554222222 223455544443332211 001111122221111 2444444
Q ss_pred CCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 297 SACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
. ++ +++. .++|.++++++.+.+.+++.
T Consensus 405 ~--------~~-l~~~-~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 405 I--------YL-LTVE-HTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred c--------cc-cccc-CcHHHHHHHHHHHHHHHHHh
Confidence 0 00 1222 46899999999999888763
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.8e-13 Score=129.00 Aligned_cols=271 Identities=15% Similarity=0.170 Sum_probs=177.4
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCC--CCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCcccc
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADH--GNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~--gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~ 80 (334)
..++...+++..++-+..++|++.+.++.++ .++ +++|++++.+|+.....++. ..|.+++.++... +
T Consensus 128 t~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~------d 201 (954)
T PRK05367 128 TMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK------A 201 (954)
T ss_pred HHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc------C
Confidence 3455567789999999999999999888876 344 48999999999998876541 4799999998632 1
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++ + .++.++++.+| |.+|.+.| +++|+++|+++|+++++|.....+.. ..+ ..
T Consensus 202 ~~-------~-----~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~----l~~---pg---- 254 (954)
T PRK05367 202 LD-------H-----DDVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTL----LTP---PG---- 254 (954)
T ss_pred CC-------c-----ccEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccC----CCC---hh----
Confidence 11 1 14555666665 57899998 99999999999999999975422111 111 11
Q ss_pred cCCCcEEEEecccccC---CCCCceEEEEeecCHHHHHHHHH-hhc-------------------------ccCCChHHH
Q 019899 161 VDKDRVHIIYGLSKDL---SLPGFRTGVIYSYNESVLAAAKK-LTR-------------------------FCSISAPTQ 211 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~---~~~g~r~g~i~~~~~~~~~~~~~-~~~-------------------------~~~~~~~~~ 211 (334)
+.+.++++++.+|+. |..|...|++.+ ++++.+.+.- .-. ..+.|..+.
T Consensus 255 -e~GaDi~vgs~qkfg~P~g~GGP~aGflav-r~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~ 332 (954)
T PRK05367 255 -EMGADIAVGSAQRFGVPMGFGGPHAAYFAV-RDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTA 332 (954)
T ss_pred -hcCCCEEEeeCcccCCCCCCCCCCEEEEEE-CHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchH
Confidence 168889999999972 123345899998 6666555421 000 011122122
Q ss_pred HHHHHhhCC--hH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHh
Q 019899 212 RLLISMLSD--TK-FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNI 288 (334)
Q Consensus 212 ~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (334)
.++...+.. .. +...-+.+..++...+.+++.+.|+..|+++..+.-.-.+.++++. +..++.++|+ +
T Consensus 333 qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~~--------~~~~i~~~l~-~ 403 (954)
T PRK05367 333 QVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVGG--------DAAAVLARAL-A 403 (954)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCCC--------CHHHHHHHHH-H
Confidence 222222211 01 1234467778888999999999998888886543211112233321 3467888854 5
Q ss_pred cCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHH
Q 019899 289 AKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQ 327 (334)
Q Consensus 289 ~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~ 327 (334)
+||.+..- .++.+|+|+.. .|++||+.+++.+.
T Consensus 404 ~gi~~~~~------~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 404 AGINLRRV------DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred CCceeccc------cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 89988321 14579999996 58999999999996
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-12 Score=118.01 Aligned_cols=278 Identities=15% Similarity=0.138 Sum_probs=156.5
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc----------C----CCCeEEecCCCCCChhhhhhhccCcE-EE----------EEe
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA----------D----HGNALLVPSPYYPGFDRDIRFRTGVE-LI----------PVH 70 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~----------~----~gd~vl~~~p~~~~~~~~~~~~~g~~-v~----------~v~ 70 (334)
..+.+++++++++|+..++.... . ++.+|+....+|.+......-..|.. .. .++
T Consensus 102 ~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~ 181 (431)
T TIGR03251 102 ALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRID 181 (431)
T ss_pred CcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCC
Confidence 34689999999999999887652 1 13678888888876543322022311 10 011
Q ss_pred CCC------CCCc-------cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEe
Q 019899 71 CRS------TDNF-------AFSITALDQAFNQARKRGVKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISD 136 (334)
Q Consensus 71 ~~~------~~~~-------~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D 136 (334)
.++ .... .-+++++++.+.. ...++.++++...+...|.+ .+.+.+++|.++|++||+++|+|
T Consensus 182 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D 258 (431)
T TIGR03251 182 NPKLTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFD 258 (431)
T ss_pred CCcccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 100 0000 0123344444442 23467777776557777876 46678999999999999999999
Q ss_pred ccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCH--HHHHH-HH---HhhcccCCChHH
Q 019899 137 EIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE--SVLAA-AK---KLTRFCSISAPT 210 (334)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~--~~~~~-~~---~~~~~~~~~~~~ 210 (334)
|++.++...|..+. .... +..++ + .+++|.+. . .|++.. ++ ++... +. .....++.+++.
T Consensus 259 EV~tG~GrtG~~~a-~~~~----gv~PD--i--~~~gK~~~-~---~g~~~~-~~i~~~~~~~~~~~~~~~~T~~gnpl~ 324 (431)
T TIGR03251 259 EVQTGVGLTGTAWA-YQQL----GVQPD--I--VAFGKKTQ-V---CGIMAG-RRVDEVADNVFAVPSRLNSTWGGNLVD 324 (431)
T ss_pred cchhccCccchHHH-HHhc----CCCCC--E--EEecccCc-c---ceEEec-chHHHhhhhcccCccccCCCCCCCHHH
Confidence 99997655443211 1111 11122 2 24788862 2 255543 32 22211 11 123446677777
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----CC-CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHH
Q 019899 211 QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ----LG-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKL 285 (334)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (334)
..++.+.++..+ ++ ...++++++-+++.+.|++ .+ +.......|.++.++++.. .....+...+
T Consensus 325 ~aaa~a~L~~l~--~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l 393 (431)
T TIGR03251 325 MVRATRILEIIE--EE---RLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVIRQL 393 (431)
T ss_pred HHHHHHHHHHHH--hc---CHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCH------HHHHHHHHHH
Confidence 777777665321 11 1222333444444444433 22 2211222356666777532 1234577775
Q ss_pred HHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHH
Q 019899 286 LNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 286 l~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~ 328 (334)
+ ++||.+.|.. .+.+|++++. .+++|++++++++.+
T Consensus 394 ~-~~Gvl~~~~g------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 394 Y-REGVLLLGCG------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred H-hCCeEEecCC------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 5 5899997643 2568988774 699999999999876
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=115.16 Aligned_cols=291 Identities=16% Similarity=0.172 Sum_probs=187.4
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH----
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR---- 92 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~---- 92 (334)
.++-++-+.+..++..++.+++++||.+.+++-...+....++ ...-.++++. +.|+++++..+.+..
T Consensus 154 ~E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nfaIq~Glq-lSRS~i~~Fk-------hndm~~lerll~E~~~~~~ 225 (467)
T KOG1358|consen 154 TEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQ-LSRSTISYFK-------HNDMEDLERLLPEQEDEDQ 225 (467)
T ss_pred CcceeeeccccchhhhcchhhhccCcEEEEehhhhHHHHHHHh-hhhheeEEec-------CCCHHHHHHhccCcchhhh
Confidence 3445555666779999999999999999999999988888888 7777777776 357888877653221
Q ss_pred HcC--CceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC--CCCcchhhhhhhccccCCCcEE
Q 019899 93 KRG--VKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG--NEEFVSMAEILEAEEVDKDRVH 167 (334)
Q Consensus 93 ~~~--~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 167 (334)
++- ..++-.++... .-++|.+.+ +.+|.++..+|...||.||.|+....+ |.+...+..... .+.++
T Consensus 226 K~~k~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~-----~~iDi 297 (467)
T KOG1358|consen 226 KNPKKALTRRFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPI-----TDIDI 297 (467)
T ss_pred hccccccceEEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCc-----cceee
Confidence 111 12354566655 568999999 999999999999999999999886654 455556665543 56778
Q ss_pred EEecccccCCCCCceEEEEeecCHHH--HHHHHHhhcccCCChHH--HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 168 IIYGLSKDLSLPGFRTGVIYSYNESV--LAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 168 ~~~s~sK~~~~~g~r~g~i~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
+++|+.-+++..| |++.+ +.-+ .+++......++.+.+. ..++...+.- .++-....+.++.....+.
T Consensus 298 v~~sm~~alas~G---gFc~G-~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i----~~~~p~~~~~L~~k~~~~H 369 (467)
T KOG1358|consen 298 VTASMETALASGG---GFCAG-KSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILI----EEWNPEIVQPLRAKVAKFH 369 (467)
T ss_pred eeecccccccccC---ceeec-ceeeEeeeeccccceeeeccCchhhhhhHHHHHHH----HhhCcchhhhhhccccccc
Confidence 8889988887444 66665 4332 34444444445444333 3333333322 2222334455666666666
Q ss_pred HHHHhC-CCcccCCCceeEEeeecCCcCCCC--ChhhHHHHHHHHHHhcCeEEcCCCCcCC----CCCCeEEEEecC-CC
Q 019899 244 AGLKQL-GIRCSESSAGLYCWADMSGLIPSY--SEKGELELWDKLLNIAKINVTPGSACHC----IEPGWFRCCFTS-LT 315 (334)
Q Consensus 244 ~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~~iRi~~~~-~~ 315 (334)
..|... ++.+....-.....+.+.+...+. ...--.++++..+.+ ++.+....+.-. .-+..+|+++.. .+
T Consensus 370 ~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~s 448 (467)
T KOG1358|consen 370 AALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMS 448 (467)
T ss_pred hhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCC
Confidence 666654 566665544444555555432211 111224566666665 777654333210 113479999985 79
Q ss_pred cccHHHHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKVAET 332 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~~ 332 (334)
+++++++.+.+++....
T Consensus 449 eeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 449 EEELERAAELIKEVASA 465 (467)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-12 Score=118.80 Aligned_cols=219 Identities=13% Similarity=0.124 Sum_probs=142.1
Q ss_pred eEEecCCCCCChhhhhhhccCc---EEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHH
Q 019899 43 ALLVPSPYYPGFDRDIRFRTGV---ELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETL 119 (334)
Q Consensus 43 ~vl~~~p~~~~~~~~~~~~~g~---~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l 119 (334)
+++++...|+++..++. .+|. .++.||+ ++++.+|++.|+++|++...++..+-+|+.+.+++.+|.+-|.+++
T Consensus 224 ~vl~s~~aHyS~~KAa~-ilGlG~~~vv~Vpv--D~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI 300 (608)
T TIGR03811 224 KWLVPQTKHYSWLKAAD-IIGIGLDQVIPVPV--DSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKI 300 (608)
T ss_pred EEEECCCccHHHHHHHH-HcCCCcccEEEeec--CCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHH
Confidence 68888888999999998 8887 5899998 4667899999999999877777677778888889999999995555
Q ss_pred HHHHHHHHhcCc--EEEEeccccccc---cCCC--Ccc------------------------hhhhhhhccccCCCcEEE
Q 019899 120 YELLDFAREKNI--HVISDEIYGGSI---FGNE--EFV------------------------SMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 120 ~~i~~~~~~~~~--~vi~D~~~~~~~---~~~~--~~~------------------------~~~~~~~~~~~~~~~~~~ 168 (334)
.+|++.++++|+ |+++|.+|+++. +-.. .+. ....... ++ ...+-+
T Consensus 301 ~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~--gl-e~ADSI 377 (608)
T TIGR03811 301 VALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYK--AI-SEAESV 377 (608)
T ss_pred HHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHh--cC-cCceEE
Confidence 555555578898 699999999853 1110 000 0111111 22 233344
Q ss_pred EecccccCCCCCceEEEEeecCHHHHHHHHHhhccc----------------CCChHHHHHHHHhhC--ChHHHHHHHHH
Q 019899 169 IYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC----------------SISAPTQRLLISMLS--DTKFIQEYLET 230 (334)
Q Consensus 169 ~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~--~~~~~~~~~~~ 230 (334)
...+||++. .....|.++.+++.+.+.+.....+. ..+.+...++..++. ....-.+.+.+
T Consensus 378 tvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~ 456 (608)
T TIGR03811 378 TIDPHKMGY-IPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGK 456 (608)
T ss_pred EeCcccccc-cCCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence 558999875 66789999888887766554322111 112222222332222 11001345577
Q ss_pred HHHHHHHHHHHHHHHHHhCC-------Ccc---cCCCceeEEeeecCC
Q 019899 231 NKRRIKKLYDSFVAGLKQLG-------IRC---SESSAGLYCWADMSG 268 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~g-------~~~---~~~~~g~~~~~~~~~ 268 (334)
+.++..+.++++.+.|++++ +++ ..|+-+..+|.-.|+
T Consensus 457 ~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~ 504 (608)
T TIGR03811 457 LIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEK 504 (608)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecC
Confidence 78888888999999998743 343 345556555443333
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-11 Score=100.95 Aligned_cols=303 Identities=17% Similarity=0.192 Sum_probs=196.1
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCC-----CeEEecCCCCCChhhhhhhccCcEEEEEeCCCC--------CCccccHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHG-----NALLVPSPYYPGFDRDIRFRTGVELIPVHCRST--------DNFAFSITAL 84 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~g-----d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~--------~~~~~~~~~l 84 (334)
..++.|..+..|-++++..+.+++ .+.++++..|.-..+.-....|..++-++++.. -...+|++.|
T Consensus 95 q~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kL 174 (471)
T COG3033 95 QYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKL 174 (471)
T ss_pred eeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHH
Confidence 678899999999999999887654 344555555554444333267877777765332 2246899999
Q ss_pred HHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEecc-cccccc------CCCCcchhhhhh
Q 019899 85 DQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEI-YGGSIF------GNEEFVSMAEIL 156 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~-~~~~~~------~~~~~~~~~~~~ 156 (334)
++.|++.... ++-.|+++.. |...|+..|.+.++++.++|++|+++++.|.+ |....| ++-...++.++.
T Consensus 175 e~lidevG~~--nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~Ia 252 (471)
T COG3033 175 ERLIDEVGAD--NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIA 252 (471)
T ss_pred HHHHHHhCcc--cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHH
Confidence 9999986332 2334444444 44889999999999999999999999999987 333322 122234455544
Q ss_pred hc-cccCCCcEEEEecccccCCCCCceEEEEeecCHH---HHHHHHHh-------hcccCCChHHHHHHHHhhCChHHHH
Q 019899 157 EA-EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES---VLAAAKKL-------TRFCSISAPTQRLLISMLSDTKFIQ 225 (334)
Q Consensus 157 ~~-~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (334)
.+ ..+ ..-+. -|.-|- |+..+ .|++..+++. +-..++.. .++++.+.-.+.+++.-|.+.-. .
T Consensus 253 rEm~sY--aD~~~-mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~-~ 326 (471)
T COG3033 253 REMYSY--ADGCT-MSAKKD-GLVNM-GGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVN-F 326 (471)
T ss_pred HHHHhh--hhhhe-eecccc-ceecc-ccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcC-c
Confidence 43 111 11122 244442 22321 2566665653 55555442 34456666677777666654211 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCCcCCC-
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSACHCI- 302 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~- 302 (334)
+|++.+.+++ +++.+.|++.|+++..|.+|.-++++..+..+. .....+..++-.|.++.||...-...+...
T Consensus 327 ~yl~~Rv~Qv----~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~r 402 (471)
T COG3033 327 DYLAHRVAQV----QYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGR 402 (471)
T ss_pred HHHHHHHHHH----HHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceeccc
Confidence 4555554444 799999999999999999999999987654432 233466788899999999976543322211
Q ss_pred ----------CCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 303 ----------EPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 303 ----------~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
.-.-+|+.+.. .|.+.++..++.++++.+.
T Consensus 403 d~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 403 DPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred CCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 11458999884 4899999999999988764
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-11 Score=97.31 Aligned_cols=295 Identities=13% Similarity=0.157 Sum_probs=185.8
Q ss_pred CCcEEEecCcHHHHHHHHHHh---cCCCCeEEecCCCCCChhhh-hhhc------cC---cEEEEEe---CCCC------
Q 019899 17 PSQIVLTAGATPAVEILCFCL---ADHGNALLVPSPYYPGFDRD-IRFR------TG---VELIPVH---CRST------ 74 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l---~~~gd~vl~~~p~~~~~~~~-~~~~------~g---~~v~~v~---~~~~------ 74 (334)
-+-+++++++++|+.++++.. .+..|.|.++ ..|.++... ++ . .| .++.+|. +++-
T Consensus 102 Lsvc~F~NSGSEANDLALRLAR~ftkhqDvItld-HAYHGHl~s~mE-~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r 179 (452)
T KOG1403|consen 102 LSVCFFVNSGSEANDLALRLARNFTKHQDVITLD-HAYHGHLQSVME-VSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFR 179 (452)
T ss_pred ceEEEEecCCchhhHHHHHHHHhhcccCceEEEe-chhccceeeeee-ccceeccCCCCcCCCceeEecCCccccccccc
Confidence 567999999999999998764 4566755554 455544432 22 1 12 1222222 2111
Q ss_pred -------CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEEEeccccccccCC
Q 019899 75 -------DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVISDEIYGGSIFGN 146 (334)
Q Consensus 75 -------~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi~D~~~~~~~~~~ 146 (334)
+....=.+.+++.+++..+.|-++.+.+..+-+.=.|+++|+. ..+++++..+.+|-..|.||++-+|..-|
T Consensus 180 ~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG 259 (452)
T KOG1403|consen 180 DKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVG 259 (452)
T ss_pred cccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccc
Confidence 1011224567778887777776777677666677778877665 58999999999999999999998765544
Q ss_pred CCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH----hhcccCCChHHHHHHHHhhCChH
Q 019899 147 EEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK----LTRFCSISAPTQRLLISMLSDTK 222 (334)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~ 222 (334)
..+..+.- ++-+--+.++.|.+| .|-+++.+.. .+++.+.+.. +...++.|+.+.++..+.++..+
T Consensus 260 ~hyWafq~--------y~fiPDIVtmgKpmG-NGhPVa~Vat-tkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e 329 (452)
T KOG1403|consen 260 SHYWAFQT--------YNFIPDIVTMGKPMG-NGHPVAAVAT-TKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCE 329 (452)
T ss_pred hhhhhhhh--------hccccchheecccCC-CCCeeeEEec-cHHHHHHhccccceehhccCCCchhHHHHHHHHHHHh
Confidence 43333321 344445668999999 9999999998 8899888865 34456788888888777776433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSES--SAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~--~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
.+.+.....++.+..+.+...++. ..++.+. ..|.|+-+++-+.... ...+.+.-+..+|.+.++|.+..-.
T Consensus 330 --~E~Lq~ha~~vG~~L~~lL~~~k~-kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG- 405 (452)
T KOG1403|consen 330 --DENLQEHAQQVGEKLEVLLRRLKQ-KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG- 405 (452)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHhh-hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC-
Confidence 233344444444444444444433 2334433 3466666666543221 2223344577887778889886422
Q ss_pred cCCCCCCeEEEEec-CCCcccHHHHHHHHHHHH
Q 019899 299 CHCIEPGWFRCCFT-SLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 299 ~~~~~~~~iRi~~~-~~~~~~l~~~l~~l~~~~ 330 (334)
+ ..+.+.|-.. ..++++.++.+..|.+++
T Consensus 406 --P-h~NilKiKPPmCFneena~e~v~~ld~iL 435 (452)
T KOG1403|consen 406 --P-HRNILKIKPPMCFNEENADEFVLGLDEIL 435 (452)
T ss_pred --C-CCceeecCCCcccChhhHHHHHHHHHHHH
Confidence 1 2456666533 268999888888887776
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.9e-11 Score=101.82 Aligned_cols=296 Identities=15% Similarity=0.165 Sum_probs=178.4
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcH---HHHHHHHHHhcC----CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCC
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGAT---PAVEILCFCLAD----HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~---~~~~~~~~~l~~----~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~ 74 (334)
++||.+-.| .++-.+-..+|+. .++.++-..+-. ..+.+|+|+-.|+....++. ..|.+|+.|++ +
T Consensus 115 q~~L~~ITG----~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAa-m~G~~VV~V~~--~ 187 (496)
T COG1003 115 QEWLKEITG----MDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAA-MAGFKVVVVKC--D 187 (496)
T ss_pred HHHHHHhcC----CceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHh-hcCceEEEEec--C
Confidence 466666433 3444444444543 233333333322 34689999999999988888 99999999999 4
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
++..+|+++|++++.+ ++.++.+++|++ .|.. ++++++|+++.+++|-.|..|.+--. -+..
T Consensus 188 ~~G~VDlddLk~k~~~------~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGANlN---------A~vG 249 (496)
T COG1003 188 ENGNVDLDDLRAKAED------NLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGANLN---------AIVG 249 (496)
T ss_pred CCCCccHHHHHHHhcc------ceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCcchh---------hhhc
Confidence 5568999999999986 899999999975 3333 56799999999999999999987322 1111
Q ss_pred hhhccccCCCcEEEEecccccCCCC----CceEEEEeecCHHHHHHHHH----------------------hhcccCCCh
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLP----GFRTGVIYSYNESVLAAAKK----------------------LTRFCSISA 208 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~----g~r~g~i~~~~~~~~~~~~~----------------------~~~~~~~~~ 208 (334)
+... + +.+.++.=-.++|+|+.| |...|=|.. ...+...+-. ...+++..+
T Consensus 250 ~~rP-G-d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgV-k~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~ 326 (496)
T COG1003 250 LARP-G-DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGV-KAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSAS 326 (496)
T ss_pred cccc-c-ccccceEEeecccccccCCCCCCCCCCceeh-HhhccccCCCCcccCCCccccccCCCCccceeeccccCcch
Confidence 1110 1 145555555899999533 344555554 3444333321 011122222
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CceeEEeeecCCcCCCCChhhHHHHHHHH
Q 019899 209 PTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES--SAGLYCWADMSGLIPSYSEKGELELWDKL 285 (334)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (334)
....+.+.+..-+ .+-+.+..+.---+++++..+|+.. .+.+... ...-++ ++..+. .........+++++|
T Consensus 327 il~~a~~YI~~mG---~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~i-ld~r~l-~~~~Gv~~~DvAKrL 401 (496)
T COG1003 327 ILPIAWAYIRMMG---ADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHECI-LDARPL-KKETGVRALDVAKRL 401 (496)
T ss_pred HHHHHHHHHHHHh---HHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEEE-eechHh-HhhcCCcHHHHHHHH
Confidence 2223333222221 3345555666667889999999873 2322222 122222 333211 112233557899997
Q ss_pred HHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 286 LNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 286 l~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++ +|+-. |-.+|...-.+.+-|=... .+.+++|++++++.++.++
T Consensus 402 lD-~GfHa-PT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E 447 (496)
T COG1003 402 LD-YGFHA-PTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE 447 (496)
T ss_pred Hh-cCCCC-CcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 76 89875 4555653334556665553 3677899999999888764
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-11 Score=104.53 Aligned_cols=266 Identities=12% Similarity=0.093 Sum_probs=165.9
Q ss_pred cEEE-ecCcHHHHHHHHHHhcCCCCeEE--ecCCCCCC-hhhhhhhccCcEEEEEeCCC--CCCccccHHHHHHHHHHHH
Q 019899 19 QIVL-TAGATPAVEILCFCLADHGNALL--VPSPYYPG-FDRDIRFRTGVELIPVHCRS--TDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 19 ~i~~-~~g~~~~~~~~~~~l~~~gd~vl--~~~p~~~~-~~~~~~~~~g~~v~~v~~~~--~~~~~~~~~~l~~~l~~~~ 92 (334)
+|++ ..|+|.++.++...++++||+++ +.+..|.. ..+.++ .+| ++..+.... +.+..++.++++ +.
T Consensus 69 ~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~-~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~--- 141 (364)
T PRK12462 69 GVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEAS-RVA-AMRVVWDGAASGYRTLPSLAELD--WD--- 141 (364)
T ss_pred eEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHH-hcC-CceEecCcCCCCCCcCCCHHHhc--cC---
Confidence 4555 45589999999999999999665 44444432 223344 456 444443211 122334555541 11
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
.+.+.+.+++..+.||+.++ ++.+.++.++|+|.+-+.+. ....+.. + +++..+.
T Consensus 142 ---~d~~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~~~s----~pid~~~--------~--dvi~ags 196 (364)
T PRK12462 142 ---ARAPFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMSSDFMS----RPFDVEA--------Y--GMVYAHA 196 (364)
T ss_pred ---CCCcEEEEccCCCCceEecC--------cccccCCCeEEEEcCchhhC----CCCChHH--------c--cEEEeec
Confidence 15677888888889999997 22233689999998855321 2233322 2 4667788
Q ss_pred cccCCCCCceEEEEeecCHHHHHHHHHh--------------hcccCCChHHHHHHHHhhCChHHH-HH--HHHHHHHHH
Q 019899 173 SKDLSLPGFRTGVIYSYNESVLAAAKKL--------------TRFCSISAPTQRLLISMLSDTKFI-QE--YLETNKRRI 235 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~~~~~~~~ 235 (334)
.|.+|.+| ++.++. +++.+++.... +.+.+++....+++...++ |+ ++ -++.+.++.
T Consensus 197 QKnlgP~G--ltvviv-s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~---~i~~e~GGl~~~~~r~ 270 (364)
T PRK12462 197 QKNLGPAG--VTVAII-RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLR---WIRDEIGGVHAMRDIN 270 (364)
T ss_pred cccCCCCc--eEEEEE-CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHH---HHHHhccCHHHHHHHH
Confidence 99999776 677777 66665544321 1122444455555555543 33 33 467888889
Q ss_pred HHHHHHHHHHHHhCC-Cccc----CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEE
Q 019899 236 KKLYDSFVAGLKQLG-IRCS----ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~ 310 (334)
+++++.+++.+.... +... ....-+-+.++++.. ....++... ++++|+.-.-|+.- -+.+|+|
T Consensus 271 ~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~------~l~~~f~~~-a~~~gl~~lkGhr~----vgg~Ras 339 (364)
T PRK12462 271 ARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQP------RLDTLFKEQ-STEAGFCGLSGHRS----IGGIRAS 339 (364)
T ss_pred HHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCH------HHHHHHHHH-HHHCCCccccCCcc----cCceEEE
Confidence 999999999998874 4322 122334444555432 223456666 77789987666642 3569999
Q ss_pred ecC-CCcccHHHHHHHHHHHHHHc
Q 019899 311 FTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 311 ~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+-+ .+.++++.+++-++++-+++
T Consensus 340 ~yna~~~e~v~~L~~fm~~f~~~~ 363 (364)
T PRK12462 340 LYNAVSEQAVSRLCAFLKDFAIRH 363 (364)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhc
Confidence 875 79999999999999887765
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-12 Score=111.45 Aligned_cols=215 Identities=18% Similarity=0.169 Sum_probs=129.3
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhhhhhc------------cCcEEEEEeCCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRDIRFR------------TGVELIPVHCRSTD 75 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~------------~g~~v~~v~~~~~~ 75 (334)
..+.+++++++++|+..++.... ....+|+....+|.+......-. ....+..+|.++..
T Consensus 75 ~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~ 154 (339)
T PF00202_consen 75 GLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPA 154 (339)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHH
T ss_pred ccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccc
Confidence 56799999999999999987655 24468998888887643211101 11234666653211
Q ss_pred C---ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 76 N---FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 76 ~---~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
. ..-..+.+++.+.+.. .+++.++++...+...|... +.+.+++|.++|++||+++|+||++.++...|..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~--~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a- 231 (339)
T PF00202_consen 155 ADEEEQACLNALEELIAALN--ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFA- 231 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSG-
T ss_pred hhhhHHHHHHHHHHHHHhhc--CCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccc-
Confidence 1 0112223444433321 23666566554466667655 566799999999999999999999998866665432
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
..... .++ +++ +++|.++ .|+++|.++. ++++.+.+.. +..+++.++.+..++.+.++..+ + .
T Consensus 232 ~~~~g----v~P--Div--~~gK~l~-gG~p~sav~~-~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~---~--~ 296 (339)
T PF00202_consen 232 SEHYG----VDP--DIV--TFGKGLG-GGLPISAVLG-SEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILE---E--E 296 (339)
T ss_dssp HHHHT----SSS--SEE--EEEGGGG-TTSSEEEEEE-EHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHH---H--T
T ss_pred eeccc----ccC--ccc--ccccchh-hhhhcccccc-cchhhccccccccccccccchHhhhhhhhHHHhhc---c--H
Confidence 22221 112 333 4679998 7899999998 8888777643 34556678888887777775432 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019899 230 TNKRRIKKLYDSFVAGLKQ 248 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~ 248 (334)
...+++.++-+++.+.|++
T Consensus 297 ~~~~~~~~~g~~l~~~L~~ 315 (339)
T PF00202_consen 297 DLLERVRELGERLREGLRE 315 (339)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2233444444455554443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=98.80 Aligned_cols=308 Identities=13% Similarity=0.207 Sum_probs=184.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC-------CC-----CeEEec-CCCCCChhhhhhhccC---cEEEE
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD-------HG-----NALLVP-SPYYPGFDRDIRFRTG---VELIP 68 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~-------~g-----d~vl~~-~p~~~~~~~~~~~~~g---~~v~~ 68 (334)
+++.++ |....|.|+--.|+.+.+.++..+-.+ .| +-|+.+ +.+|+++..++. .+| -+++.
T Consensus 150 m~~ivG--w~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa-~lg~gtd~c~~ 226 (510)
T KOG0629|consen 150 MREIVG--WEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAA-FLGLGTDHCIK 226 (510)
T ss_pred HHHHhC--CCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHH-HhccCCceeEE
Confidence 455556 444445665555555555555444211 11 345544 578999999888 777 66778
Q ss_pred EeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCC
Q 019899 69 VHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEE 148 (334)
Q Consensus 69 v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~ 148 (334)
|+. +...++.+++|++.|-..+..|..|-.+-.+..++.-|..-| +..++++|.+|++|+++|.+|++...=+..
T Consensus 227 v~t--~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L~~iadiC~k~~lWmHvDAAwGGglLmS~k 301 (510)
T KOG0629|consen 227 VKT--DERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---LNGIADICEKHKLWMHVDAAWGGGLLMSRK 301 (510)
T ss_pred ecc--cccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---HHHHHHHHHhcCEEEEeecccccccccChh
Confidence 887 455689999999999887766666665656656778888888 999999999999999999999873321111
Q ss_pred cchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--------cCCC-----hHHHH---
Q 019899 149 FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--------CSIS-----APTQR--- 212 (334)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--------~~~~-----~~~~~--- 212 (334)
...... +.+.-+ -+..+.+|.+| .++.++..+.+.+.+.+.+...... +.+| -..|-
T Consensus 302 ~R~kl~-----Giera~-SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh 374 (510)
T KOG0629|consen 302 HRHKLT-----GIERAN-SVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRH 374 (510)
T ss_pred hHhhcc-----CccccC-ceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCcc
Confidence 111111 111111 23458899998 7788888888666676666433211 1111 01111
Q ss_pred --HHHHhh---CChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc---CCC-ceeEEeeecCCcCCC-CCh------
Q 019899 213 --LLISML---SDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCS---ESS-AGLYCWADMSGLIPS-YSE------ 275 (334)
Q Consensus 213 --~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~---~~~-~g~~~~~~~~~~~~~-~~~------ 275 (334)
+..-++ +.+ .+.+++..+.+.++++++..+|++. ++... .|+ .++..|...+..-.. ...
T Consensus 375 ~D~FKlWlmwkaKG---~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL 451 (510)
T KOG0629|consen 375 VDVFKLWLMWKAKG---TQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRL 451 (510)
T ss_pred ccHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHH
Confidence 111111 111 1224677888999999999999997 44433 244 344445443322110 101
Q ss_pred -hhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 276 -KGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 276 -~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
+.+..+-..+++ +|.....-... ...++++|+.+++ .+..|++-+++.|..+-++
T Consensus 452 ~kVaPkIK~~Mm~-~Gt~Mi~YqPl-~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 452 VKVAPKIKERMMK-KGTTMIGYQPL-GDKPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred HhhCcHHHHHHHh-ccceeeEeccc-ccccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 122234445455 46544321211 1246789998774 5899999999999876543
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-09 Score=92.88 Aligned_cols=285 Identities=12% Similarity=0.102 Sum_probs=171.7
Q ss_pred CCCCCC--cEEEec-CcHHHHHHHHHHhcCCCCeEEec---CCCCCChhhh--hhhccCcEE----EEEeCCCCCCcccc
Q 019899 13 VSFDPS--QIVLTA-GATPAVEILCFCLADHGNALLVP---SPYYPGFDRD--IRFRTGVEL----IPVHCRSTDNFAFS 80 (334)
Q Consensus 13 ~~~~~~--~i~~~~-g~~~~~~~~~~~l~~~gd~vl~~---~p~~~~~~~~--~~~~~g~~v----~~v~~~~~~~~~~~ 80 (334)
++++++ .|-+-+ +++.|+..+..++++|+++|.=. +..|-++.-. -+.-....+ .++.++ +...-||
T Consensus 99 F~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~-~~TG~ID 177 (477)
T KOG2467|consen 99 FGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVD-PSTGYID 177 (477)
T ss_pred hCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeC-CCCCcee
Confidence 556666 233333 45669999999999999988643 3333222111 110111111 122233 2445789
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccc-cccCCCCcchhhhhhhcc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGG-SIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~-~~~~~~~~~~~~~~~~~~ 159 (334)
.|.|++..... ++++|+.-.... -..++ -.++.++|.+.|.+++.|-+|.. ++-.+..+.++
T Consensus 178 YD~Le~~A~~f-----rPk~iiaG~SaY--~R~~D---YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPF------- 240 (477)
T KOG2467|consen 178 YDKLEKTATLF-----RPKLIIAGTSAY--SRLID---YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPF------- 240 (477)
T ss_pred hHHHHHHHHhc-----CCcEEEeccccc--hhhcc---HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcc-------
Confidence 99999988887 899655443333 35666 55555666677999999999843 33333222222
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHH---------------HHHHHHHh---hcccCCChHHHHHHHHhhCCh
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES---------------VLAAAKKL---TRFCSISAPTQRLLISMLSDT 221 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~---------------~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~ 221 (334)
.-.+++.++.+|++ .|.|.|.|..+ +. +-+.+... ...+++......+++-+|+..
T Consensus 241 ---ey~DiVTTTTHKsL--RGPRg~mIFyR-kGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa 314 (477)
T KOG2467|consen 241 ---EYCDIVTTTTHKSL--RGPRGAMIFYR-KGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQA 314 (477)
T ss_pred ---cccceeeccccccc--cCCcceeEEEe-ccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhh
Confidence 33457788999988 77888998863 21 12222211 112345556666777666542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCceeEEeeecCC-cCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 222 KFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS-ESSAGLYCWADMSG-LIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
. ...+.+...++.+++..+.+.|.+.|.+++ ....+..+.+++.+ ..++ ..+.++++..+|.+.-...+
T Consensus 315 ~--tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dG-------arvE~vle~~~I~~NKNtvp 385 (477)
T KOG2467|consen 315 M--TPEFKEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDG-------ARVEKVLELCHIALNKNTVP 385 (477)
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccCCch-------HHHHHHHHHhhhhhcCCcCC
Confidence 2 334577888999999999999999999876 34445555567754 3333 44455566666665433333
Q ss_pred CC---CCCCeEEEEecC-----CCcccHHHHHHHHHHHH
Q 019899 300 HC---IEPGWFRCCFTS-----LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 300 ~~---~~~~~iRi~~~~-----~~~~~l~~~l~~l~~~~ 330 (334)
|- -.++.+|++... ..++|++++.+-|.+++
T Consensus 386 GD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av 424 (477)
T KOG2467|consen 386 GDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAV 424 (477)
T ss_pred CCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence 22 246789998654 24678877777766654
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-09 Score=94.34 Aligned_cols=296 Identities=16% Similarity=0.190 Sum_probs=167.7
Q ss_pred CCcEEEecCcHH-HHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC-CCCCccccHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATP-AVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR-STDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 17 ~~~i~~~~g~~~-~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~~~~~~l~~~l~~~~ 92 (334)
...+++++-+|. .+.+.+.++. ..++.|+.+.-.+.+...++. .+|.+++.||.. +.+....|.+.+++.+++.
T Consensus 74 ~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~-~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~- 151 (389)
T PF05889_consen 74 VKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIE-RAGLEPVVVENVLEGDELITDLEAIEAKIEEL- 151 (389)
T ss_dssp HCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHH-HTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH-
T ss_pred ccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHH-hcCCeEEEeeccCCCCeeeccHHHHHHHHHHh-
Confidence 346788877763 2333344443 467899999988888888888 899999999843 3455567889999998765
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcE-EEEec
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRV-HIIYG 171 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 171 (334)
|....+.++++++.-.+..- +++.+|.++|++||++.++..+|+. ..........+ ....+++ +++.|
T Consensus 152 --G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgv------Q~~~~~~~i~~-a~~~GRvda~vqS 220 (389)
T PF05889_consen 152 --GADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGV------QSSKCMHLIQQ-AWRVGRVDAFVQS 220 (389)
T ss_dssp --CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT------T-HHHHHHHHH-HHHHSTCSEEEEE
T ss_pred --CCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhh------hHHHHHHHHHH-HHhcCCcceeeee
Confidence 34556778887765555543 3699999999999999999999974 11111111111 0013344 66778
Q ss_pred ccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 019899 172 LSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ--- 248 (334)
Q Consensus 172 ~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 248 (334)
..|-| +.|...+.+.+.++..++.+.+.-..-...++....+..++..+ ...+........+...++.++|++
T Consensus 221 ~dkNF-~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG---~~g~~~ll~~r~~~f~~l~erl~~~ae 296 (389)
T PF05889_consen 221 TDKNF-MVPVGGAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLG---CTGYGALLKERKASFPYLKERLKKWAE 296 (389)
T ss_dssp HHHHH-CEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCE-EecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88988 45555677777788888777643222122233333444444322 112233333344444444444443
Q ss_pred -CCCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE----EcCCCCcC---CC--CCCeEEEEec-CCCc
Q 019899 249 -LGIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN----VTPGSACH---CI--EPGWFRCCFT-SLTH 316 (334)
Q Consensus 249 -~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~~g~~~~---~~--~~~~iRi~~~-~~~~ 316 (334)
.+-.+. .|.+...+.+.++...... ..+...+... |..+||. +.|+.... .+ ...|+-++.. .++.
T Consensus 297 e~~e~ll~~p~N~is~a~tl~~l~~~~-~k~~~~lgs~-Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~ 374 (389)
T PF05889_consen 297 EVGERLLETPRNHISMAFTLDTLYEIS-QKDGTFLGSM-LFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTR 374 (389)
T ss_dssp HTTEEBSSSTT-SSEEEEE-TTCCTCC-SSHHHHHHHH-HHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--H
T ss_pred HhhhhhcCCCCCCeeEEEECccchhhc-cchhhhHHHH-HHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCH
Confidence 343333 3566666767777543221 1344566666 4446774 33332221 11 1368888544 2899
Q ss_pred ccHHHHHHHHHHHHH
Q 019899 317 EDIPLVIERIQKVAE 331 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~ 331 (334)
+|++.++++|.++++
T Consensus 375 eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 375 EEVDYFVKRLDKIIK 389 (389)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.2e-09 Score=89.30 Aligned_cols=217 Identities=18% Similarity=0.184 Sum_probs=123.7
Q ss_pred CcHHHHHHHHHHhcCCCCeEEecC-CCCCChhhhh----------hhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 25 GATPAVEILCFCLADHGNALLVPS-PYYPGFDRDI----------RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 25 g~~~~~~~~~~~l~~~gd~vl~~~-p~~~~~~~~~----------~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
++|+|+..++..++.|||+.+..+ .=|......+ + ..|.+...+++. ++..+|++.+++++++
T Consensus 80 SGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~-e~Gi~Y~~v~L~--~dg~~D~~~i~~~~~~--- 153 (403)
T PF06838_consen 80 SGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLK-EFGIKYREVPLT--EDGTIDWEAIKKALKP--- 153 (403)
T ss_dssp SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTG-GGT-EEEE--B---TTSSB-HHHHHHHHHT---
T ss_pred chHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChH-HhCceeEEEeec--CCCCcCHHHHHHhhcc---
Confidence 689999999999999999998654 3344333332 3 468889999984 5558999999999996
Q ss_pred cCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHh--cCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEe
Q 019899 94 RGVKVRGILICNP-ANPVGNIIPRETLYELLDFARE--KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY 170 (334)
Q Consensus 94 ~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (334)
++|++++.-. ...+-..++.++++++++++++ .+++++||++|+.|+-..++ .. .+.++..+
T Consensus 154 ---~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP-~~-----------vGADl~aG 218 (403)
T PF06838_consen 154 ---NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEP-TE-----------VGADLMAG 218 (403)
T ss_dssp ---TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-G-GG-----------GT-SEEEE
T ss_pred ---CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCc-cc-----------cchhheec
Confidence 8998888766 3455557899999999999876 48999999999986632211 11 46678999
Q ss_pred cccccCCCCC--ceEEEEeecCHHHHHHHHH-hhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 171 GLSKDLSLPG--FRTGVIYSYNESVLAAAKK-LTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245 (334)
Q Consensus 171 s~sK~~~~~g--~r~g~i~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (334)
|+-|-.| .| .-.|||.. ++++++.... +..++ ..-..+......++ .+-++..+ ...+..+-+-.....
T Consensus 219 SLIKNpG-GgiAptGGYIaG-r~~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~-QGlFlAP~---vV~eAlKgaif~A~~ 292 (403)
T PF06838_consen 219 SLIKNPG-GGIAPTGGYIAG-RKDLVERAAYRLTAPGIGKEVGATLGTNRLMF-QGLFLAPH---VVGEALKGAIFAAAL 292 (403)
T ss_dssp ETTSGGG-TTT-SS-EEEEE-SHHHHHHHHHHHS-TTTGGGSS--TTTHHHHH-HHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cceeCCC-CCccCcCCEEec-hHHHHHHHHhhhcCCccccccccCcchHHHHH-hHHhhchH---HHHHHHHHHHHHHHH
Confidence 9999885 33 24588888 8999888764 33331 00000011111111 11122322 222333344455556
Q ss_pred HHhCCCcccC----CCceeEEeeecCC
Q 019899 246 LKQLGIRCSE----SSAGLYCWADMSG 268 (334)
Q Consensus 246 l~~~g~~~~~----~~~g~~~~~~~~~ 268 (334)
++++|+++.+ +..-....+.+..
T Consensus 293 fe~lG~~v~P~~~~~R~DiIQai~l~~ 319 (403)
T PF06838_consen 293 FEKLGFEVSPKPDDPRSDIIQAIELGS 319 (403)
T ss_dssp HHHTT-EEES-TTS--SSS-EEEE-SS
T ss_pred HHHcCCcCCCCCCCCCCceEEEEECCC
Confidence 6778988654 3334455556554
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=93.22 Aligned_cols=179 Identities=20% Similarity=0.194 Sum_probs=132.1
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcCCCCeEEec----C-CCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHH
Q 019899 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVP----S-PYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQ 90 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~----~-p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~ 90 (334)
..+.++++++.+.++..+..++.+++. |++. . +.+++..+.++ ..|++++.+... + .....+++.+|.+
T Consensus 82 ~aea~~ivnnn~aAVll~~~al~~~~E-vVis~g~lV~gg~~~v~d~~~-~aG~~l~EvG~t---n-~t~~~d~~~AIne 155 (395)
T COG1921 82 GAEAAAIVNNNAAAVLLTLNALAEGKE-VVVSRGELVEGGAFRVPDIIR-LAGAKLVEVGTT---N-RTHLKDYELAINE 155 (395)
T ss_pred chhheeeECCcHHHHHHHHhhhccCCe-EEEEccccccCCCCChhHHHH-HcCCEEEEeccc---C-cCCHHHHHHHhcc
Confidence 467899999999999999999886544 4333 1 57888999999 999999999842 2 3578999999997
Q ss_pred HHHcCCceeEEEEeCCCCC-cccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEE
Q 019899 91 ARKRGVKVRGILICNPANP-VGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 91 ~~~~~~~~~~i~~~~p~np-tG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
++++++-++.+|- .---++ .++++++|+++++++++|.+-+..... -........ .+.++++
T Consensus 156 ------~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~~---e~~l~~~la-----~GaDLV~ 218 (395)
T COG1921 156 ------NTALLLKVHSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVDK---EPDLREALA-----LGADLVS 218 (395)
T ss_pred ------CCeeEEEEeecccccccccc---HHHHHHHHHHcCCCEEEecCCcccccc---ccchhHHHh-----cCCCEEE
Confidence 7888877777652 222345 788999999999999999986554331 234444444 6788899
Q ss_pred ecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCC
Q 019899 170 YGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSD 220 (334)
Q Consensus 170 ~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~ 220 (334)
+|..|.++ |.+.|.+++ ++++++.+++. ...+........++..+++.
T Consensus 219 ~SgdKllg--GPqaGii~G-kKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~ 268 (395)
T COG1921 219 FSGDKLLG--GPQAGIIVG-KKELIEKLQSHPLKRALRVDKETLAALEAALEL 268 (395)
T ss_pred EecchhcC--CCccceEec-hHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHH
Confidence 99999884 557888887 89999888765 33455666666666665543
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.6e-10 Score=96.31 Aligned_cols=279 Identities=18% Similarity=0.161 Sum_probs=169.8
Q ss_pred EEecCcHHHHHHHHHHh----cC-CC---CeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 21 VLTAGATPAVEILCFCL----AD-HG---NALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 21 ~~~~g~~~~~~~~~~~l----~~-~g---d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
..|+|+|+++...-..- .+ .| ..++.+...+..+....+ ..+.++..||+.+ +.+.+|+..+.+.+++
T Consensus 142 ~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~-yf~v~l~~V~~~~-~~~~~D~~k~~~~i~e-- 217 (491)
T KOG1383|consen 142 CGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAAR-YFEVELREVPLDE-GDYRVDPGKVVRMIDE-- 217 (491)
T ss_pred ccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHh-hEEEEEEeeeccc-cceEecHHHHHHHhcc--
Confidence 34667888844443221 11 22 346666667777777776 7889999999864 7889999999999998
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-cCcEEEEeccccccccC-CCCcchhhhhhhccccCCCcEEEEe
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFARE-KNIHVISDEIYGGSIFG-NEEFVSMAEILEAEEVDKDRVHIIY 170 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~-~~~~vi~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (334)
++..++.+.|+.|+|..-+ +++|.++..+ +++++.+|.+-+.|.-+ +.. .... .++....|..+.
T Consensus 218 ----Nti~lv~~~~~~p~G~~e~---ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~--~~~~----fdFr~p~V~Sis 284 (491)
T KOG1383|consen 218 ----NTIMLVGSLPNFPTGEIED---VEKLADLLLEIWDIPIHVDACLGGFINPAGYL--NEEE----FDFRVPGVTSIS 284 (491)
T ss_pred ----ceEEEEEEcCCCCccchhh---HHHHHHHHHHHhCCceeecccCcccccccccc--Cccc----cccCCCCceeEe
Confidence 8999999999999999988 8888888888 99999999998877653 111 1111 122234444443
Q ss_pred -cccccCCCCCceEEEEeecCHHHHHH-HHHhhc---------ccCCChH---HHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 171 -GLSKDLSLPGFRTGVIYSYNESVLAA-AKKLTR---------FCSISAP---TQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 171 -s~sK~~~~~g~r~g~i~~~~~~~~~~-~~~~~~---------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
+.+| +|+..-..||++-++++++.. +..... ..+.|.+ ...+.++++..+ .+...+..+++.
T Consensus 285 a~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG---~eGY~~~~~~iv 360 (491)
T KOG1383|consen 285 ADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLG---EEGYRENTQNIV 360 (491)
T ss_pred eccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhh---HHHHHHHHHHHH
Confidence 5567 444555588988766665332 211111 1112222 223333333333 233355566688
Q ss_pred HHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--
Q 019899 237 KLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-- 313 (334)
Q Consensus 237 ~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-- 313 (334)
+....+++.+++. ++.++..+.--+..++-.. . +-.++.+. +.+.|=.+. ...+ +..+-+++..
T Consensus 361 e~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~-~------~i~elsd~-l~~~GW~ln-alq~----P~a~Hi~vt~~~ 427 (491)
T KOG1383|consen 361 ETARKLREGIENIKGIKIVGKPLVSFILFGSND-V------NIFELSDL-LRKKGWILN-ALQF----PAAIHICVTRVH 427 (491)
T ss_pred HHHHHHHHhhhccccceecCCCcEEEEEccCCc-c------chhhhhHH-HHhcCcCcc-ccCC----CCceEEEEEeee
Confidence 8889999999987 6777765332222222111 1 22355555 665776554 3323 2345555542
Q ss_pred CCcccHHHHHHHHHHHHHHc
Q 019899 314 LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++-.++++..++++++++
T Consensus 428 ~~~~~A~~~v~Di~~~~~el 447 (491)
T KOG1383|consen 428 AREDVADRFVADIRKVVEEL 447 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 23444577788888777653
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-08 Score=98.07 Aligned_cols=267 Identities=15% Similarity=0.142 Sum_probs=165.6
Q ss_pred hcCCCCCCCCcEEEecCcHHHHHHHHHHh-c--CCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccHH
Q 019899 9 LGQAVSFDPSQIVLTAGATPAVEILCFCL-A--DHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 9 ~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~--~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+....+.+..|.-+..++|++.++++.+. . +++++|++++-.|+.+...++ ...|.+++.++ ++
T Consensus 118 i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~ 187 (939)
T TIGR00461 118 VSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CS 187 (939)
T ss_pred HHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HH
Confidence 33445677788888888888888776663 2 234899999999998886665 24688888775 23
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+|++.+ ++.++++.+|++ .|.+.+ +++|.++++++|.+++++.-.-. ..-+.....
T Consensus 188 ~l~~~~--------~~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~gal~~~~ad~~a-------l~ll~~Pge----- 243 (939)
T TIGR00461 188 DIKKAV--------DVFGCLLQYPAT-DGSILD---YKQLIDALHSHKSLVSVAADLMA-------LTLLTPPGH----- 243 (939)
T ss_pred HHhhcC--------CEEEEEEECCCC-CeEEec---HHHHHHHHHHcCCEEEEEechHH-------hCCcCCHHH-----
Confidence 444333 356677888864 788876 99999999999999998532111 111111111
Q ss_pred CCcEEEEecccccCCC----CCceEEEEeecCHHHHHHHHHh----------------------hc----ccCCChHHHH
Q 019899 163 KDRVHIIYGLSKDLSL----PGFRTGVIYSYNESVLAAAKKL----------------------TR----FCSISAPTQR 212 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~----~g~r~g~i~~~~~~~~~~~~~~----------------------~~----~~~~~~~~~~ 212 (334)
.+-+++++ .+|.||. .|...|++.+ ++++...+.-. +. -.+.|.-...
T Consensus 244 ~GaDi~vg-~~q~fg~p~g~GGP~aG~~a~-~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~q 321 (939)
T TIGR00461 244 YGADIVLG-SSQRFGVPMGYGGPHAAFFAV-KDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQ 321 (939)
T ss_pred cCCcEEee-CCCccCCCCCCCCCceeeeee-cHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHH
Confidence 56677754 3444543 3556788877 55554443100 00 0011111111
Q ss_pred HHHHhhCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeE--EeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 213 LLISMLSD---TKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLY--CWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 213 ~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
++.+.... .-+..+.+.+..++...+..++.+.|++.|+++..+ .+| +.++++. .++.++.+++ .
T Consensus 322 aL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~-------~~~~~i~~~~-~ 391 (939)
T TIGR00461 322 VLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGN-------GISSELLKAA-E 391 (939)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCC-------CCHHHHHHHH-H
Confidence 11111110 011244567778888899999999999999987765 333 2234431 1345778885 4
Q ss_pred hcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHH
Q 019899 288 IAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQ 327 (334)
Q Consensus 288 ~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~ 327 (334)
++||.++.. .++.+++|+.. .|++|++.+++.+.
T Consensus 392 ~~gi~l~~~------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 392 EFNINLRAV------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred HCCCeeeec------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 489997652 24579999986 58999999999885
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-09 Score=92.00 Aligned_cols=261 Identities=19% Similarity=0.229 Sum_probs=136.1
Q ss_pred CCCCcEEEecCcHHHHHHHHHHh---cCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHH
Q 019899 15 FDPSQIVLTAGATPAVEILCFCL---ADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAF 88 (334)
Q Consensus 15 ~~~~~i~~~~g~~~~~~~~~~~l---~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l 88 (334)
.+..+.-+-.+++++-.++..+. .+++++|+++.-.|+.+...++. ..|.+++.++..+ +...|
T Consensus 125 mdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~--~~~~d-------- 194 (429)
T PF02347_consen 125 MDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDE--DGTTD-------- 194 (429)
T ss_dssp SSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBT--TCSB---------
T ss_pred CCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccc--cCCcc--------
Confidence 44445556667776666655543 23346999999999998876551 3689999999743 22233
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEE
Q 019899 89 NQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (334)
. .++.+|++.+|++ .|.+-+ +++|+++++++|.++++ .+ -..... -+.+... .+-+++
T Consensus 195 ~------~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~a-d~~aL~-----~l~~Pge-----~GADI~ 252 (429)
T PF02347_consen 195 D------DDTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GA-DPNALG-----GLKSPGE-----YGADIV 252 (429)
T ss_dssp S------TTEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CG-GCCGCC-----TC--GGG-----GT-SEE
T ss_pred c------cCeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ec-CHHHHh-----CcCChhh-----cCccEE
Confidence 2 3899999999985 688877 99999999999999987 43 222221 1222221 566777
Q ss_pred EecccccCCC----CCceEEEEeecCHHHHHH----------------------------HHHhhcc--cCCChHHHH-H
Q 019899 169 IYGLSKDLSL----PGFRTGVIYSYNESVLAA----------------------------AKKLTRF--CSISAPTQR-L 213 (334)
Q Consensus 169 ~~s~sK~~~~----~g~r~g~i~~~~~~~~~~----------------------------~~~~~~~--~~~~~~~~~-~ 213 (334)
+++ +|.||. .|...|++.+ ++++... +++.+.. .+.+..... +
T Consensus 253 vg~-~Q~fg~p~~~GGP~~G~~a~-~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~ 330 (429)
T PF02347_consen 253 VGE-HQTFGIPMGFGGPGAGFFAV-REDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALA 330 (429)
T ss_dssp EEC-CTTTT---CCC-S--EEEEE--GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHH
T ss_pred eeC-CCCCcccCCCCCCCeeeEEE-hhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHH
Confidence 765 777763 3566788877 4444332 2222222 222222222 2
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEe-eecCCcCCCCChhhHHHHHHHHHHhcCe
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCW-ADMSGLIPSYSEKGELELWDKLLNIAKI 291 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~gi 291 (334)
+..++.. +..+-+.+..++...+++++.++|++. ++.+.. ..|+=+ +..++. ....++.++.. ..|+
T Consensus 331 a~~Yl~~--~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~--~~f~e~v~~~~~~------~~~~~l~~~~~-~~gl 399 (429)
T PF02347_consen 331 AAIYLAY--LGPEGLREIAERIHLNAHYLAERLKKIYGLPFDN--PFFFEFVVVFSKD------KEVEELLKRGI-EGGL 399 (429)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSS--SSBSSEEEEESS-------HHHHHHHHTT-----E
T ss_pred HHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC--CCceeeeeecCCc------HHHHHHHHHHH-hcCC
Confidence 2222222 236677889999999999999999986 333322 222211 222221 11122333322 2443
Q ss_pred EEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHH
Q 019899 292 NVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERI 326 (334)
Q Consensus 292 ~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l 326 (334)
... ....+.+-+|+.. .+++|++++++.+
T Consensus 400 ~~~------~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 400 NLR------YPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp EEG------GG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred Ccc------ccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 332 1234577788886 4888999988764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-07 Score=82.65 Aligned_cols=268 Identities=18% Similarity=0.160 Sum_probs=155.1
Q ss_pred eEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHH
Q 019899 43 ALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYEL 122 (334)
Q Consensus 43 ~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i 122 (334)
.+...+.+|.+...++. ..|.+.+.++.+ .++.++.+.|.++|++...+|--+-.++.+-. .||.+ ..+++.+|
T Consensus 184 V~Y~SDqahssveka~~-i~~VklR~l~td--~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G--TT~~c-a~D~l~el 257 (511)
T KOG0628|consen 184 VAYCSDQAHSSVEKACL-IAGVKLRALPTD--ENFGMRGDTLRKAIEEDIARGLIPFFVCATLG--TTSSC-AFDELEEL 257 (511)
T ss_pred eEEecCcccchHHHhHh-hcceeEEEeecc--cCcCCCHHHHHHHHHHHHhCCCccEEEEEeec--Ccccc-ccccHHHh
Confidence 45667889999999887 889999999974 48999999999999987776644432322222 23333 34569999
Q ss_pred HHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCH-----------
Q 019899 123 LDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE----------- 191 (334)
Q Consensus 123 ~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~----------- 191 (334)
.-+|+++|+|+++|.+|++..+. -..+..+.. ++ ...+-+-...||++- .-+-++.+..++.
T Consensus 258 g~Vc~~~glWLHVDAAYAGsa~i---CpE~r~l~r--Gi-e~aDSfn~n~hK~~~-vnfDCs~lWvkd~~~~~~~~~vdp 330 (511)
T KOG0628|consen 258 GPVCREEGLWLHVDAAYAGSAFI---CPEFRYLMR--GI-EYADSFNFNPHKWLL-VNFDCSPLWVKDGTKLSRAFNVDP 330 (511)
T ss_pred cchhhhcCEEEEeehhhcccccc---CHHHHHHhh--cc-hhhccccCChhheeE-EeeeeecceeecCceeeeeeecCh
Confidence 99999999999999999864432 122333222 11 111123345677652 3344444443222
Q ss_pred HHHHHHHHh-hcc---cCCC-hHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCc-eeEEee
Q 019899 192 SVLAAAKKL-TRF---CSIS-APTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSA-GLYCWA 264 (334)
Q Consensus 192 ~~~~~~~~~-~~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~-g~~~~~ 264 (334)
...+.-... ... +..+ .....++..++...-+..+.+++..++..+.++.+.+.+.+- .|++..+.- |+.+ +
T Consensus 331 ~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvc-F 409 (511)
T KOG0628|consen 331 LYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVC-F 409 (511)
T ss_pred HhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeE-E
Confidence 111111100 000 1111 111122333322222223444555555555555555555432 566654433 4444 4
Q ss_pred ecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 265 DMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
++.+. .+.-..+.+++-....|.+.|.+.- +.-.+|+++++ .+++|+++..+.+.+..+.
T Consensus 410 Rlk~~-----N~~ne~Ll~~in~~g~i~l~~~~l~---gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~ 471 (511)
T KOG0628|consen 410 RLKGD-----NEINEALLNRLNSSGRIHLVPASLH---GKFVLRFAVCSPLTNESDIDEAWKIIFEAADE 471 (511)
T ss_pred eecCC-----cHHHHHHHHHHHhcCcEEEEEeeec---ceEEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence 55432 1233578888666677888876642 23468999885 4888999999999888765
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.8e-08 Score=79.60 Aligned_cols=293 Identities=12% Similarity=0.121 Sum_probs=177.9
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCC---CeEEecCCCCCC----hhhhhhhccCcEEEEEe--C-CCCCC
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHG---NALLVPSPYYPG----FDRDIRFRTGVELIPVH--C-RSTDN 76 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~g---d~vl~~~p~~~~----~~~~~~~~~g~~v~~v~--~-~~~~~ 76 (334)
..++..+++..++|.+.++-|..+..++.++.+|- -+|++..-+|++ +...++ ..|..+...- + +.+++
T Consensus 118 ~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~-lhG~~~e~sm~~iePREGE 196 (465)
T KOG3846|consen 118 PLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCK-LHGISPENSMIQIEPREGE 196 (465)
T ss_pred hhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhh-hcCCChHHheEEecccccc
Confidence 34556678888999999999999999999997654 578888776665 445566 6776653221 2 23566
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
..+..+++.+.|+.. |..+.+|+++..+.-||+.++ +.+|...-...|++|=.|-+|.. ++ +++. +-
T Consensus 197 etlRteDILd~IEkn---gDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAv---gN---VpL~-LH 263 (465)
T KOG3846|consen 197 ETLRTEDILDTIEKN---GDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHAV---GN---VPLQ-LH 263 (465)
T ss_pred cchhHHHHHHHHHhc---CCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhhh---cC---CceE-Ee
Confidence 677888888888764 556777777777999999999 88888766778999999988764 11 2221 11
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-----------------------cCCChHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-----------------------CSISAPTQRL 213 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 213 (334)
+|+.++.|.+.-|.++...-.+|-+....+...+...++..+ +..|.+....
T Consensus 264 -----dWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~ 338 (465)
T KOG3846|consen 264 -----DWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIID 338 (465)
T ss_pred -----ecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhH
Confidence 388889999999988522224555554233333333222211 2223333333
Q ss_pred HHHhhCChHHHHHH-HHHHHHHHHHHHHHHHHHHHhC-C-----------CcccCC----CceeEEeeecCCcCCCCChh
Q 019899 214 LISMLSDTKFIQEY-LETNKRRIKKLYDSFVAGLKQL-G-----------IRCSES----SAGLYCWADMSGLIPSYSEK 276 (334)
Q Consensus 214 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-g-----------~~~~~~----~~g~~~~~~~~~~~~~~~~~ 276 (334)
..++..+.+...+. +.+++.+.--...++...++.. | +.+..| +.|.-+.+.++.+.
T Consensus 339 v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~------ 412 (465)
T KOG3846|consen 339 VVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPT------ 412 (465)
T ss_pred HHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCc------
Confidence 33333333322221 2333333322233333333221 2 122222 33555555555432
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHHc
Q 019899 277 GELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 277 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+... |.++|+..--. .++.||+.... .+-.|+..++..|.++++..
T Consensus 413 --~~vfqe-L~krGv~~DkR------~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~ 462 (465)
T KOG3846|consen 413 --PKVFQE-LHKRGVIGDKR------RPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL 462 (465)
T ss_pred --hHHHHH-HHHcCeecccc------CCCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence 377888 45578876422 36789998664 47889999999999998764
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-09 Score=93.35 Aligned_cols=213 Identities=20% Similarity=0.235 Sum_probs=51.5
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCC---CCC---hhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHH
Q 019899 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPY---YPG---FDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFN 89 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~---~~~---~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~ 89 (334)
.++..+++|+...|+.+++.++. +|.+|++.... ++. +.+.++ ..|+.++.|...+ .-.+++++++|+
T Consensus 61 gAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip~vm~-~sGa~lvEVGttN----~t~~~Dye~AI~ 134 (367)
T PF03841_consen 61 GAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIPDVMR-QSGARLVEVGTTN----RTHLSDYEKAIT 134 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-cccccccccccccccccccccccccc-ccccccccccccc----cccccccccccc
Confidence 46678888888889999988886 45567766432 222 445666 7899999998632 346788999999
Q ss_pred HHHHcCCceeEEEEeCCCCC--cccCCCHHHHHHHHHHHHhcCcEEEEeccccccc----cCCCCcchhhhhhhccccCC
Q 019899 90 QARKRGVKVRGILICNPANP--VGNIIPRETLYELLDFAREKNIHVISDEIYGGSI----FGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 90 ~~~~~~~~~~~i~~~~p~np--tG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 163 (334)
+ ++.+++..+++|- .|+.-.. .++++.+++++|++++++|-.-+.+. |+-..-.++.... ..
T Consensus 135 e------~Ta~ll~Vh~Sn~~i~GFt~~~-~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~-----~~ 202 (367)
T PF03841_consen 135 E------NTAALLKVHTSNFRIQGFTGEV-SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYL-----AA 202 (367)
T ss_dssp ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CC-----CC
T ss_pred c------cccccccccccccccccccccc-cHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHh-----hc
Confidence 8 8999999998774 3433222 38999999999999999997643221 1100112333333 26
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCCh---HH------HHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDT---KF------IQEYLETNK 232 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~---~~------~~~~~~~~~ 232 (334)
+.++++.|-.|.+|.| ..|.|++ ++++++.+++.. ..+...-....++.+.++.. +. ....+....
T Consensus 203 GaDlV~fSGdKlLGGP--QaGiI~G-kk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~ 279 (367)
T PF03841_consen 203 GADLVTFSGDKLLGGP--QAGIIVG-KKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSL 279 (367)
T ss_dssp T-SEEEEETTSSSSS---S-EEEEE-EHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH---------------------
T ss_pred CCCEEEEECCCcCCCC--CeEEEEe-CHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 7889999999999644 4788887 899999998642 33445555555554444321 10 012244555
Q ss_pred HHHHHHHHHHHHHHHhC
Q 019899 233 RRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~ 249 (334)
+.++++++.+...|+..
T Consensus 280 ~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 280 EELRARAERLAAQLKAA 296 (367)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 66667777777776654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-06 Score=76.56 Aligned_cols=271 Identities=18% Similarity=0.185 Sum_probs=164.0
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc---CCCCeEEecCCCCCChhhhhhhc---cCcEEEEEeCCCCCCccccHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA---DHGNALLVPSPYYPGFDRDIRFR---TGVELIPVHCRSTDNFAFSITALDQ 86 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~~---~g~~v~~v~~~~~~~~~~~~~~l~~ 86 (334)
.+.+..|.-+-.++|.+-.+++.+.- ++..+|+++..+|+.+.+.++.. .|.+++.++.+ |++++++
T Consensus 133 TGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~ 205 (450)
T COG0403 133 TGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLES 205 (450)
T ss_pred hCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhh
Confidence 34555555666677777777666652 23589999999999999988733 46777777752 6777777
Q ss_pred HHHHHHHcCCceeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCc
Q 019899 87 AFNQARKRGVKVRGILICNPANPVG-NIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR 165 (334)
Q Consensus 87 ~l~~~~~~~~~~~~i~~~~p~nptG-~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (334)
+ ++ ..+-++++..|+. .| ... +++++.+.++++|.++++=- + .-...-+.+.. +.+.
T Consensus 206 ~-~~-----~~~~gv~vQyP~~-~G~~~~---d~~~l~~~~h~~~al~~v~a---D----plaL~LL~pPG-----e~GA 263 (450)
T COG0403 206 A-DD-----GDVFGVLVQYPNT-FGIVEE---DLRALIEAAHSAGALVIVAA---D----PLALGLLKPPG-----EFGA 263 (450)
T ss_pred c-cc-----cCeEEEEEecCCC-CCccch---hHHHHHHHHhhcCCEEEEEe---c----hhHhhccCCcc-----ccCC
Confidence 7 43 2678899998874 45 444 49999999999999888531 1 00111111111 1788
Q ss_pred EEEEecccc---cCCCCCceEEEEeecCHHHHH----------------------------HHHHhhccc--CCChHHHH
Q 019899 166 VHIIYGLSK---DLSLPGFRTGVIYSYNESVLA----------------------------AAKKLTRFC--SISAPTQR 212 (334)
Q Consensus 166 ~~~~~s~sK---~~~~~g~r~g~i~~~~~~~~~----------------------------~~~~~~~~~--~~~~~~~~ 212 (334)
+|++++..- .+|..|...|+..+ ..++.. .+++-+... +.+.....
T Consensus 264 DIvvG~~QrfGvPmgfGGPhag~fA~-~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA 342 (450)
T COG0403 264 DIVVGSAQRFGVPMGFGGPHAGYFAV-KDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLA 342 (450)
T ss_pred ceEEecCcccCCCcCCCCcceeeeeE-hHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHH
Confidence 888887543 33455677888777 443322 222222222 11111111
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcccCCCceeE--EeeecCCcCCCCChhhHHHHHHHHHHh
Q 019899 213 LLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL--GIRCSESSAGLY--CWADMSGLIPSYSEKGELELWDKLLNI 288 (334)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (334)
.++.+... -+..+-+.+...+..+...++.+.|++. |+++... .+| +.++++.. ....+..+ ...
T Consensus 343 ~~As~y~~-~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~~-------~~~~l~~~-~~~ 411 (450)
T COG0403 343 LAASMYAV-YHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPEE-------VAEALLAA-AIA 411 (450)
T ss_pred HHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecchh-------HHHHHHHH-HHh
Confidence 11111111 1124557888899999999999999965 5776554 444 33455531 22344555 334
Q ss_pred cCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 289 AKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 289 ~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
.|+.+..-. ++.+-+++.. .++++++.+++.+....
T Consensus 412 ~G~~L~~~~------~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 412 GGINLRRVD------ADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred cCCceeeec------CCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 677765322 3356677775 47889999988887653
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-06 Score=72.24 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=127.5
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc-hhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-SMAE 154 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~-~~~~ 154 (334)
+-+++++++.|..+.+....+. .+++.| +...|.-. +.+=.+.+.++|++|++.+|+||++.+..-+|.-.. ....
T Consensus 252 ~~Cl~~Ve~li~~~~~k~~pVa-aiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~ 330 (484)
T KOG1405|consen 252 QGCLAEVEDLIVKYRKKKKPVA-AIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWN 330 (484)
T ss_pred hhHHHHHHHHHHHHhhcCCCeE-EEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcC
Confidence 4578999999998876654455 455556 77777644 566689999999999999999999976544333111 1222
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHH-HHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAA-AKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
+. ...+ +.+|||-+- .| ||.. +++++-. -.+....|.+.+.-...+.+.++... + +.+.+
T Consensus 331 l~------~PpD--~vTFSKK~q-~g---Gffh--~~~frpn~pYrifNTWmGdP~k~lll~~vv~~I~--~---~~Ll~ 391 (484)
T KOG1405|consen 331 LD------SPPD--VVTFSKKFQ-TG---GFFH--DEEFRPNEPYRIFNTWMGDPSKNLLLEEVVQEIK--R---EDLLN 391 (484)
T ss_pred CC------CCcc--ceehhhhhh-cC---cccc--CcccCCCchHHHhhhhcCChHHHHHHHHHHHHHh--H---HHHHH
Confidence 22 2222 336888884 44 5433 4444321 22333444444444444444443221 1 22333
Q ss_pred HHHHHHHHHHHHHHhC----C--CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 234 RIKKLYDSFVAGLKQL----G--IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~----g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
.....-..+..+|.++ + +.-....+. |+.+++|... ....++.. ++.+|+.+-. || ...+
T Consensus 392 n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGT-F~a~d~ps~~------~Rdk~i~~-~~~nGv~~GG---Cg---~~si 457 (484)
T KOG1405|consen 392 NVAHVGKALLKGLLELQAKYPGKINNLRGRGT-FIAWDCPSGS------IRDKLILI-ARLNGVNLGG---CG---DKSI 457 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhhcccccce-EEEEeCCChH------HHHHHHHH-HHHcCceecc---cc---ccee
Confidence 3344445555555543 1 333344444 5556887642 22345555 6668888743 22 4567
Q ss_pred EEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 308 RCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 308 Ri~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
|+..+- .++...+-+++++.+++..
T Consensus 458 RfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 458 RFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred eeccceeehhhhHHHHHHHHHHHhcc
Confidence 776553 4788888899999988764
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-05 Score=68.80 Aligned_cols=284 Identities=14% Similarity=0.127 Sum_probs=160.7
Q ss_pred hhhhhhcCCCCCCCC-cEEEec-CcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCc--EEEEEeCCC-CCCcc
Q 019899 4 FMSQVLGQAVSFDPS-QIVLTA-GATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGV--ELIPVHCRS-TDNFA 78 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~-~i~~~~-g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~--~v~~v~~~~-~~~~~ 78 (334)
-+++.++ + +.+ +|.+.+ |+|.....+...|+.++..-.+....|.....-.....+. .+....... ..+.-
T Consensus 58 ~lreLl~--i--Pd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~i 133 (365)
T COG1932 58 DLRELLN--I--PDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSI 133 (365)
T ss_pred HHHHHhC--C--CCCceEEEEcCccHHHHHHHHHhhhcccCceeEeeeehhHhHHHHHHHhcccccccccceeccCccCC
Confidence 4555544 4 444 455555 5688888888888765532133344444332222213332 222222111 12222
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
.+++.+. +.+ +...|.+|.-.+-+|+-++. ...+. .+.+++.|-.-.-+. ...++.
T Consensus 134 P~~~~~~--~~~------~~ayv~~~~NeTi~Gv~v~~--~p~~~-----~~~~~v~D~SS~ils----r~iDvs----- 189 (365)
T COG1932 134 PDLSKWD--FSD------NDAYVHFCWNETISGVEVPE--LPDIG-----SDGLLVADASSAILS----RPIDVS----- 189 (365)
T ss_pred CChhhcc--cCC------CccEEEEecCCcccceEccC--CCCCC-----CCceEEEecccHHhc----CCCChh-----
Confidence 3443333 222 33347777666788887761 22221 127788896633322 223332
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh------------cccCCChHHHHHHHHhhCChHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT------------RFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
+..++-.+.-|.+|..| ++.++. +++++++++... ....-|++...+...+....+|+..
T Consensus 190 -----k~dviyagaQKnlGpaG--ltvvIv-r~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~ 261 (365)
T COG1932 190 -----KYDVIYAGAQKNLGPAG--LTVVIV-RPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKS 261 (365)
T ss_pred -----HcceEEEehhhccCccc--eEEEEE-cHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHH
Confidence 33455678999999788 888888 888888876531 1112355555555555444455444
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHhCCCcc--c--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 227 Y--LETNKRRIKKLYDSFVAGLKQLGIRC--S--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 227 ~--~~~~~~~~~~~~~~~~~~l~~~g~~~--~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
. ++.+.++-.++++.+.+.+.+.+|.. . ....-+-+.+.+.+. +-+..+... ++++|+...-|+.
T Consensus 262 ~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~------~ld~~fv~e-ae~~gl~~lkGhr-- 332 (365)
T COG1932 262 QGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDA------ELDKGFVAE-AEAAGLIYLKGHR-- 332 (365)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcH------HHHHHHHHH-HHHcCCceecccc--
Confidence 3 46667777788899999998875532 1 223344455555532 223456666 4446666555542
Q ss_pred CCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 301 CIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 301 ~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
..+.+|+++.+ ++.++++.+++-+..+.++++
T Consensus 333 --~vgGmRasiynA~~~e~veaL~~fm~~f~~~~~ 365 (365)
T COG1932 333 --SVGGLRASIYNAVPLEDVEALTDFMDWFEETYK 365 (365)
T ss_pred --CCCceeeeeecCCCHHHHHHHHHHHHHHHHhhC
Confidence 24559999986 699999999999999888764
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.57 E-value=9e-08 Score=73.82 Aligned_cols=53 Identities=55% Similarity=0.975 Sum_probs=47.7
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG 53 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~ 53 (334)
+|+|+.++++..+.+++++|++|+|+++++..++.+++++||.|++++|.|+.
T Consensus 101 iA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 101 IANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred HHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 57889888775566889999999999999999999999999999999999974
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-05 Score=78.37 Aligned_cols=262 Identities=15% Similarity=0.138 Sum_probs=151.7
Q ss_pred CCCCCcEEEecCcHHHHHHHHHHh-c--CCCCeEEecCCCCCChhhhhhhc---cCcEEEEEeCCCCCCccccHHHHHHH
Q 019899 14 SFDPSQIVLTAGATPAVEILCFCL-A--DHGNALLVPSPYYPGFDRDIRFR---TGVELIPVHCRSTDNFAFSITALDQA 87 (334)
Q Consensus 14 ~~~~~~i~~~~g~~~~~~~~~~~l-~--~~gd~vl~~~p~~~~~~~~~~~~---~g~~v~~v~~~~~~~~~~~~~~l~~~ 87 (334)
+.+..|.-+-.++|.+-.+++.+. . ++..+|+++.-.|+.+...++.. .|.+++. +++++.
T Consensus 138 Gm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~ 204 (954)
T PRK12566 138 GLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNL 204 (954)
T ss_pred CchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhc
Confidence 344444445556665555444443 1 22568999999999888877622 4555553 223333
Q ss_pred HHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEE
Q 019899 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVH 167 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (334)
+.+ ++.++++.+|++ .|.+.+ ++++.+++++.|.+++ +.+. .+. ..-+.+.. +.+.+|
T Consensus 205 ~~~------~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~gal~~-~~~d-~la-----L~ll~~Pg-----e~GADI 262 (954)
T PRK12566 205 AAH------AVFGALLQYPDT-HGEIRD---LRPLIDQLHGQQALAC-VAAD-LLS-----LLVLTPPG-----ELGADV 262 (954)
T ss_pred CCC------CEEEEEEECCCC-ceEEcc---HHHHHHHHHHcCCEEE-EEeC-HHH-----HhCCCChh-----hcCCcE
Confidence 332 577888999974 688866 9999999999999876 3321 111 11111111 167778
Q ss_pred EEec---ccccCCCCCceEEEEeecCHHHHHHH----------------------------HHhhccc--CCChHHHHHH
Q 019899 168 IIYG---LSKDLSLPGFRTGVIYSYNESVLAAA----------------------------KKLTRFC--SISAPTQRLL 214 (334)
Q Consensus 168 ~~~s---~sK~~~~~g~r~g~i~~~~~~~~~~~----------------------------~~~~~~~--~~~~~~~~~~ 214 (334)
++++ |+=.+|..|...|++.+ .+++...+ ++.+... +.+......+
T Consensus 263 ~vG~~Q~fGvp~~~GGP~ag~~a~-~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~ 341 (954)
T PRK12566 263 VLGSTQRFGVPMGYGGPHAAYFAC-RDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANI 341 (954)
T ss_pred EeeCCCcCCCCCCCCCCCeeeeee-hHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHH
Confidence 7763 33344455667888887 44443322 2222221 1111111111
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
+.++... +..+-+.+..++...++.++.+.|++.|+++... .||--+.+.-.. ...++..+ ..+.||.++
T Consensus 342 a~~Y~~~-~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~~~------~~~~~~~~-a~~~~~n~r 411 (954)
T PRK12566 342 AGFYAVY-HGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR--HFFDTLTLEVGG------AQAAIIES-AEAARINLR 411 (954)
T ss_pred HHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CccceEEEEccC------CHHHHHHH-HHHCCCeeE
Confidence 1111111 1244567778888899999999999999887544 444322222110 13466666 444788876
Q ss_pred CCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHH
Q 019899 295 PGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQ 327 (334)
Q Consensus 295 ~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~ 327 (334)
-- .++.+.+|+.. .+++|+..+++.+.
T Consensus 412 ~~------~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 412 IL------GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred Ee------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 42 23567888886 58889998888874
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7e-06 Score=68.35 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=105.4
Q ss_pred CcHHHHHHHHHHhcCCCCeEEecCCC-CCChhh----------hhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 25 GATPAVEILCFCLADHGNALLVPSPY-YPGFDR----------DIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 25 g~~~~~~~~~~~l~~~gd~vl~~~p~-~~~~~~----------~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
++|+|+..++..+++|||+.+..... |....+ ++. ..|.....+|+ ..+..+|++.++..+++
T Consensus 91 sGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~-dfgi~Y~~v~L--t~~gkiD~~~v~~~i~~--- 164 (416)
T COG4100 91 SGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLK-DFGIKYKAVPL--TADGKIDIQAVKTAISD--- 164 (416)
T ss_pred cchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHH-HhCcceeeccc--ccCCcccHHHHHHhcCc---
Confidence 46779999999999999998776543 222222 222 35677778887 44568999999999997
Q ss_pred cCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHh--cCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEe
Q 019899 94 RGVKVRGILICNP-ANPVGNIIPRETLYELLDFARE--KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY 170 (334)
Q Consensus 94 ~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (334)
++|+|.+.-. ....--.++.+++++++.+.++ .++.+++|++|+.|.=...+ .. -+.++..+
T Consensus 165 ---~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EP-t~-----------vGaDliAG 229 (416)
T COG4100 165 ---RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEP-TH-----------VGADLIAG 229 (416)
T ss_pred ---cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCc-cc-----------cchhhhcc
Confidence 8998777654 2222235788889999998877 48999999999987632211 11 35556778
Q ss_pred cccccCCCCCc--eEEEEeecCHHHHHHHH
Q 019899 171 GLSKDLSLPGF--RTGVIYSYNESVLAAAK 198 (334)
Q Consensus 171 s~sK~~~~~g~--r~g~i~~~~~~~~~~~~ 198 (334)
|+-|.-| .|+ -.||+.. +.++.+...
T Consensus 230 SLIKNpG-GgiaktGGYiaG-k~~~ve~~~ 257 (416)
T COG4100 230 SLIKNPG-GGIAKTGGYIAG-KAELVEAAA 257 (416)
T ss_pred ceeeCCC-Cceeeccceeec-hHHHHHhhc
Confidence 8888765 332 2367776 778877764
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.5e-05 Score=68.57 Aligned_cols=256 Identities=14% Similarity=0.120 Sum_probs=149.5
Q ss_pred eEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHH
Q 019899 43 ALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYEL 122 (334)
Q Consensus 43 ~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i 122 (334)
..++|.-.|+....++. .+|.+|++|.+ ..+..+|+.+|+...+++ ..+..++.++.|++- |.. ++.++++
T Consensus 632 vClIPvSAHGTNPASA~-MagmkvvpV~~--~~~G~id~~dLk~kaekh---~~~Laa~MvTYPST~-Gvf--E~~i~d~ 702 (1001)
T KOG2040|consen 632 VCLIPVSAHGTNPASAA-MAGMKVVPVGC--DANGNIDMVDLKAKAEKH---KDNLAALMVTYPSTH-GVF--EEGIDDI 702 (1001)
T ss_pred eEEEeecccCCChhhHH-hcCCEEEEeec--cCCCCccHHHHHHHHHHh---hhhhheeEEeccccc-ccc--cccHHHH
Confidence 56788888888888888 89999999998 456689999999877654 236778899988653 332 4459999
Q ss_pred HHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCC----CceEEEEeecCHHHHHHHH
Q 019899 123 LDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLP----GFRTGVIYSYNESVLAAAK 198 (334)
Q Consensus 123 ~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~----g~r~g~i~~~~~~~~~~~~ 198 (334)
+++.++||--|..|.+--. ..+.+-... +.+.++.=-.++|+|++| |..+|=|.. .+.+...+.
T Consensus 703 cd~iHehGGQVYlDGANMN------AqVGlc~pG-----d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgV-K~HLapfLP 770 (1001)
T KOG2040|consen 703 CDIIHEHGGQVYLDGANMN------AQVGLCRPG-----DIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLP 770 (1001)
T ss_pred HHHHHhcCCEEEecCCCcc------ceecccCCc-----cccccceeecccceeeecCCCCCCCCCccch-hhhccccCC
Confidence 9999999999999987321 011111111 134444445789998644 344554554 444433332
Q ss_pred Hhh------------------cccCCCh--HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Q 019899 199 KLT------------------RFCSISA--PTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSA 258 (334)
Q Consensus 199 ~~~------------------~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 258 (334)
.+. .+|+.+. +...+-..++-... +..-.....-+++++..+|+.+--.++..+.
T Consensus 771 ~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~G-----L~~as~~AiLNaNYMakRLe~hYkil~~~~~ 845 (1001)
T KOG2040|consen 771 SHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGG-----LKDASKIAILNANYMAKRLESHYKILFRGEN 845 (1001)
T ss_pred CCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccc-----cchhhHHHhhhhHHHHHHHhhccceeEecCC
Confidence 211 1122111 11222333332221 1223334456788999999886323333334
Q ss_pred eeE---EeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHH
Q 019899 259 GLY---CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 259 g~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
|.. +.+++.+.... ....+.+++++ |.++|.-...-+ +. -.+.+-|-... -+.++++++.+++-.+
T Consensus 846 ~~vaHEFIlD~r~fK~~-agieavDvAKR-L~DYgFHaPTms-wP--V~gtLMIEPTESE~k~ElDRfcdAliSI 915 (1001)
T KOG2040|consen 846 GLVAHEFILDLRPFKKT-AGIEAVDVAKR-LMDYGFHAPTMS-WP--VAGTLMIEPTESEDKAELDRFCDALISI 915 (1001)
T ss_pred cceeeeeeeechhhccc-cCCcHHHHHHH-HHhccCCCCccc-cc--cCCceEeccCccccHHHHHHHHHHHHHH
Confidence 432 22454443222 22345788888 566888753333 32 24556565542 3556788888877654
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.3e-05 Score=62.63 Aligned_cols=273 Identities=15% Similarity=0.199 Sum_probs=135.2
Q ss_pred EEecCCCCCChhhhhhhccCcEEEEEe-CCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHH
Q 019899 44 LLVPSPYYPGFDRDIRFRTGVELIPVH-CRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYEL 122 (334)
Q Consensus 44 vl~~~p~~~~~~~~~~~~~g~~v~~v~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i 122 (334)
|+-+.-.-.+....+- ..|.+++-+. +.+.+...-|++.++..+++. +...|++.+..+..=..-+++.+++|
T Consensus 106 iiw~ridqks~~ksi~-~agfepiiie~i~d~d~l~tdleav~~~iee~-----g~dcilci~sttscfapr~pd~leai 179 (432)
T KOG3843|consen 106 IIWLRIDQKSCFKSII-HAGFEPIIIENILDGDELITDLEAVEAIIEEL-----GEDCILCIHSTTSCFAPRSPDNLEAI 179 (432)
T ss_pred EEEEecchHHHHHHHH-hcCCCceeeeccccchHHHHhHHHHHHHHHHh-----CCceEEEEeecccccCCCCCchHHHH
Confidence 4434333344455555 6788876665 333444556899999999886 66666666554433334466789999
Q ss_pred HHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCc-EEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh
Q 019899 123 LDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR-VHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT 201 (334)
Q Consensus 123 ~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~ 201 (334)
..+|..|+++-|+..+|+.-. .....-+..... -++ +.++.|+.|.|-.| ...+.+.+-++..++.+.+.-
T Consensus 180 aaica~~diphivnnayglqs--ee~i~~iaa~~~-----~grida~vqsldknf~vp-vggaiia~fk~n~iq~iak~y 251 (432)
T KOG3843|consen 180 AAICAAHDIPHIVNNAYGLQS--EECIHKIAAAAE-----CGRIDAFVQSLDKNFMVP-VGGAIIAAFKDNFIQEIAKMY 251 (432)
T ss_pred HHHHHccCchhhhccccccch--HHHHHHHHHHhh-----hccHHHHHHHhhhcceee-cchhHhhHhHHHHHHHHHHhC
Confidence 999999999999999997511 111111111111 233 34567999988433 222233333556666665432
Q ss_pred cccCCChHHHHHHHHhhCChH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCceeEEeeecCCcCCCCChhhHH
Q 019899 202 RFCSISAPTQRLLISMLSDTK-FIQEYLETNKRRIKKLYDSFVAGLKQLGIRC-SESSAGLYCWADMSGLIPSYSEKGEL 279 (334)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 279 (334)
..-..+.++.-.+..++..++ ...+.+.+.++-+...++.+...-+..|-.+ ..|++...+.+.+... +.. ...+.
T Consensus 252 pgrasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ae~~~e~l~~~p~n~is~amtl~ti-~~~-k~kav 329 (432)
T KOG3843|consen 252 PGRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKFAEAIGECLLETPENEISLAMTLKTI-DEA-KDKAV 329 (432)
T ss_pred CCccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhhccC-ChH-HhhHH
Confidence 221222333333444443322 1122333334434334443333333333222 2344433322222211 110 11122
Q ss_pred HHHHHHHHhcCe---EEcCCCCc------------CCC--C--CCeEEEEec-CCCcccHHHHHHHHHHHHHH
Q 019899 280 ELWDKLLNIAKI---NVTPGSAC------------HCI--E--PGWFRCCFT-SLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 280 ~~~~~ll~~~gi---~v~~g~~~------------~~~--~--~~~iRi~~~-~~~~~~l~~~l~~l~~~~~~ 332 (334)
.+.-.+|-..|| .+.|.+.. ++. . -+|+-+.+. ..++.|++++..+|...+++
T Consensus 330 t~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~~rl~~~~a~ 402 (432)
T KOG3843|consen 330 TLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFFNRLDRCLAA 402 (432)
T ss_pred HHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhcCCcHhHHHHHHHHHHHHHHH
Confidence 333333333555 34443321 110 0 123443333 15778899999888877654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.031 Score=52.11 Aligned_cols=265 Identities=17% Similarity=0.195 Sum_probs=138.2
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHH-hcCCCCeEEecCCCCCChhhhhhhcc---CcEEEEEeCCCCCCccccHHHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFC-LADHGNALLVPSPYYPGFDRDIRFRT---GVELIPVHCRSTDNFAFSITALDQAF 88 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~-l~~~gd~vl~~~p~~~~~~~~~~~~~---g~~v~~v~~~~~~~~~~~~~~l~~~l 88 (334)
.+.+-.+.-+-.-+|.+-.+...+ -.+++.+++++..+|+.....++.+. |.+++.. |+++...-
T Consensus 176 TGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~----------~~~~~~~s- 244 (1001)
T KOG2040|consen 176 TGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS----------DIKEADYS- 244 (1001)
T ss_pred cCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEec----------CHHHhhcc-
Confidence 344444443434344444433333 34577789999999999888877333 3332222 22222211
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEE
Q 019899 89 NQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (334)
.+....+++..|.. -|.+.+ ..++++.+++.+.++++-.- .+. ..-+.+.. +.+.++.
T Consensus 245 ------~~~v~gvlvQYP~t-~G~i~d---~~el~~~a~~~~s~vv~atD--LLa-----LtiLrpPg-----efGaDIa 302 (1001)
T KOG2040|consen 245 ------SKDVSGVLVQYPDT-EGSVLD---FDELVELAHANGSLVVMATD--LLA-----LTILRPPG-----EFGADIA 302 (1001)
T ss_pred ------ccceeEEEEEcCCC-CCcccC---HHHHHHHhhccCceEEEeeh--hhH-----HHccCChh-----hcCceee
Confidence 12567788888865 588888 77788888888888774321 000 01111111 1677788
Q ss_pred EecccccCCCC----CceEEEEee--------------------cCHHHHHHHHHh----h-cccCCChHHHHHH----H
Q 019899 169 IYGLSKDLSLP----GFRTGVIYS--------------------YNESVLAAAKKL----T-RFCSISAPTQRLL----I 215 (334)
Q Consensus 169 ~~s~sK~~~~~----g~r~g~i~~--------------------~~~~~~~~~~~~----~-~~~~~~~~~~~~~----~ 215 (334)
++|... ||+| |...|+..+ .++.++-.+... + .-.+.|.-...++ +
T Consensus 303 vGSsQR-FGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANma 381 (1001)
T KOG2040|consen 303 VGSSQR-FGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMA 381 (1001)
T ss_pred eccccc-cCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHH
Confidence 877443 4422 211121111 011222111110 0 0111121111111 1
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
+.+.-. +..+.+++..+++....-.+.+.|+..|-++.... ||-.+++.... ..+++..+.++ .+|.++-
T Consensus 382 AmyaiY-HGp~gL~~IArrvh~~T~~l~~~l~~aghel~~k~--fFDTLkI~~~~------s~~~~l~rA~~-~~iNlr~ 451 (1001)
T KOG2040|consen 382 AMYAIY-HGPHGLKEIARRVHNLTLILAEGLKNAGHELQHKP--FFDTLKIRCGC------SAEEVLDRAAK-RQINLRL 451 (1001)
T ss_pred HHHhhh-cCcHHHHHHHHHHHHHHHHHHHHHhhcchhhcccc--ccceEEEEecC------cHHHHHHHHHh-hcCceEE
Confidence 111110 11344677778888888899999998886665543 55444443221 24567777444 5676542
Q ss_pred CCCcCCCCCCeEEEEecC-CCcccHHHHHHHHH
Q 019899 296 GSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQ 327 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~ 327 (334)
-+++.+-+++.. ++++|++.++..+.
T Consensus 452 ------~ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 452 ------VEDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred ------eecCceEEeecccccHHHHHHHHHHHc
Confidence 135667788875 58889998887764
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.36 Score=40.71 Aligned_cols=281 Identities=11% Similarity=0.105 Sum_probs=150.1
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCC---CeEEecCCCCCChhhhhhhccCcEEEEEeCCC-CCCc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHG---NALLVPSPYYPGFDRDIRFRTGVELIPVHCRS-TDNF 77 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~g---d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~-~~~~ 77 (334)
.+++.++ ++-+-+-+++..|+|....++...|+ +.| |-|+.-.++-.++.++-+ ......+..+..+ ..+-
T Consensus 60 ~lreLln--iPdn~~vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk-~~~~~~V~~~~k~y~ygk 136 (370)
T KOG2790|consen 60 LLRELLN--IPDNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKK-YGTPNIVIPKLKSYTYGK 136 (370)
T ss_pred HHHHHHc--CCCceeEEEEeCCCcccccccchhhhccccCCccceEEeccccHHHHHHHHh-hCCceEEeccccccccCc
Confidence 4566555 54333345555567777777766665 444 667766666666766655 4334344444321 1112
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
-.|.+.++.- .+.+.+++|.-.+..|+-++.-- +-.-+|..++.|-. +.|.- .+...
T Consensus 137 vPd~~~w~~~--------~da~yvyyCaNETVHGVEf~~~P------~~~~~~~vlVaDmS-SnflS---rpvDv----- 193 (370)
T KOG2790|consen 137 VPDPSTWELN--------PDASYVYYCANETVHGVEFDFIP------VNDPKGAVLVADMS-SNFLS---RPVDV----- 193 (370)
T ss_pred CCChhhcccC--------CCccEEEEecCceeeceecCCCC------CCCCCCceEEEecc-cchhc---CCccc-----
Confidence 2344444431 24457888877667787665111 11335778888865 22221 12222
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-------------hccc-CCChHHHHH---HHHhhC-
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-------------TRFC-SISAPTQRL---LISMLS- 219 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~---~~~~l~- 219 (334)
.+-.+++.+..|-+|.+|+ -.++. +++++...... .+.+ +++..+.++ ..+++.
T Consensus 194 -----sk~gvi~aGAQKN~G~aG~--Tvviv-r~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~ 265 (370)
T KOG2790|consen 194 -----SKFGVIFAGAQKNVGPAGV--TVVIV-RKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILE 265 (370)
T ss_pred -----hhcceEEeccccccCcccc--EEEEE-ehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHh
Confidence 2333566788999998874 44555 45554433221 1112 222222222 222222
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC--C--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE--S--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
.+. +..+.+.-.+....+.+.+.+. ||-..+ | ..-|-+.+++.+. +-..++.....+++-+-+.
T Consensus 266 ~GG-----l~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d------~Le~eFLkeA~~~~mv~LK 334 (370)
T KOG2790|consen 266 KGG-----LAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKD------ELEAEFLKEAAKEHMVQLK 334 (370)
T ss_pred ccc-----HHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecch------HHHHHHHHHHHHhhhhccc
Confidence 221 3445555667778888888775 554321 1 1222233344321 2224666665565445544
Q ss_pred CCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 295 PGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 295 ~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
|+. +-+.+|.|+-+ ++-+++.++++-++++.++|.
T Consensus 335 -GhR----SVGGiRASlYNAisv~~~q~L~~~m~~F~k~h~ 370 (370)
T KOG2790|consen 335 -GHR----SVGGIRASLYNAISVEEVQKLAAFMKEFQKKHA 370 (370)
T ss_pred -ccc----ccccchhhhhccccHHHHHHHHHHHHHHHHhcC
Confidence 332 23569999875 799999999999999988763
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.7 Score=44.45 Aligned_cols=188 Identities=15% Similarity=0.127 Sum_probs=106.8
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc------CCCCeEEecCCCCCChhhhhhh-------ccC--cE
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA------DHGNALLVPSPYYPGFDRDIRF-------RTG--VE 65 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~------~~gd~vl~~~p~~~~~~~~~~~-------~~g--~~ 65 (334)
||.|++...+ +++++++|++.++-..|+.-+++.+. ..+..-.+ ...+..++.. ..+ .+
T Consensus 435 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1082)
T PLN02672 435 IAGFMRIYHH--IPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWL----PKKWLTSLAIENATSDSKSDDVIT 508 (1082)
T ss_pred HHHHHHHhcC--CcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccC----CHHHHhHhhhhcccccCccCCeEE
Confidence 4678888777 89999999999999999977776653 22311111 1122222220 111 22
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccc-ccc
Q 019899 66 LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGG-SIF 144 (334)
Q Consensus 66 v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~-~~~ 144 (334)
|+.-|- ..+.+.+.+++. ++++|+..-.... -.+....+.|.+.+++-|.+++.|..-.. +.-
T Consensus 509 ~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1082)
T PLN02672 509 VIEAPR--------QSDLVIELIKKL-----KPQVVVTGMADFE---MRTSTAFEHLLNVTAEIGARLFLDISDHLELSS 572 (1082)
T ss_pred EEeCCC--------cchHHHHHHHhC-----CCeEEEEeccchh---hhhHHHHHHHHHHHHhhCcEEEEehhhheeecc
Confidence 222221 123566777775 7886655444432 23445689999999999999999987322 221
Q ss_pred CCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHH
Q 019899 145 GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQR 212 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~ 212 (334)
.+..-....+.....+ +....++-++-|.-=.+.+-+.+++.-++.+...+.+-.. .+..+.++|+
T Consensus 573 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1082)
T PLN02672 573 -LPGSNGVLKYLAGHPL-PSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSKTGEVLEGRTAIISQF 640 (1082)
T ss_pred -CCCcccHHHHhcCCCC-CcchhHhhhhhhccccccceEEEEecCcHHHHHHHHHHHHhhccchHHHHHH
Confidence 1122222222221111 2333334455554434889999999877777777765432 2334444544
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.13 E-value=7.4 Score=31.85 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=91.6
Q ss_pred EEEecCcHHHHHHHHHHhcCCCCeEE---ecCC-C---CC---Ch----hhhhhhccCcEEEEEeCCCCCCccccHHHHH
Q 019899 20 IVLTAGATPAVEILCFCLADHGNALL---VPSP-Y---YP---GF----DRDIRFRTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 20 i~~~~g~~~~~~~~~~~l~~~gd~vl---~~~p-~---~~---~~----~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
+.+-+|+-....++..++ +.|..|. ...| . |. +. ...++ ..|.++++.... ....-.+++|.
T Consensus 4 ~aL~SGGKDS~~Al~~a~-~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae-~~gi~l~~~~~~--g~~e~eve~L~ 79 (223)
T COG2102 4 IALYSGGKDSFYALYLAL-EEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAE-AMGIPLVTFDTS--GEEEREVEELK 79 (223)
T ss_pred EEEEecCcHHHHHHHHHH-HcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHH-hcCCceEEEecC--ccchhhHHHHH
Confidence 678899988877776665 3443321 1111 1 11 11 11233 578888888862 33445788999
Q ss_pred HHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCc
Q 019899 86 QAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR 165 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (334)
++++.. +..+|+ +|.+++..++..+-.+|++-|+.++ .++|- -.+..-+..+.. .+-
T Consensus 80 ~~l~~l-----~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~-----~PLWg-~d~~ell~e~~~-----~Gf 136 (223)
T COG2102 80 EALRRL-----KVDGIV-------AGAIASEYQKERVERLCEELGLKVY-----APLWG-RDPEELLEEMVE-----AGF 136 (223)
T ss_pred HHHHhC-----cccEEE-------EchhhhHHHHHHHHHHHHHhCCEEe-----ecccC-CCHHHHHHHHHH-----cCC
Confidence 999875 445443 6999999999999999999999876 44441 112223333333 333
Q ss_pred EEEEecccccCCCCCceEEEEee-cCHHHHHHHHHhhcccCCCh
Q 019899 166 VHIIYGLSKDLSLPGFRTGVIYS-YNESVLAAAKKLTRFCSISA 208 (334)
Q Consensus 166 ~~~~~s~sK~~~~~g~r~g~i~~-~~~~~~~~~~~~~~~~~~~~ 208 (334)
-+.+.+.+| .|++. .|+.- -+.+..+.+.+....++.++
T Consensus 137 ~~~Iv~Vsa-~gL~~---~~lGr~i~~~~~e~l~~l~~~ygi~~ 176 (223)
T COG2102 137 EAIIVAVSA-EGLDE---SWLGRRIDREFLEELKSLNRRYGIHP 176 (223)
T ss_pred eEEEEEEec-cCCCh---HHhCCccCHHHHHHHHHHHHhcCCCc
Confidence 344445444 22232 33311 15677777777655555443
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=85.52 E-value=4.4 Score=35.03 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=42.1
Q ss_pred cCCCCCChhhhhhhc--cCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHH
Q 019899 47 PSPYYPGFDRDIRFR--TGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLD 124 (334)
Q Consensus 47 ~~p~~~~~~~~~~~~--~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~ 124 (334)
.-|+|++..+... . -..-++.+|. ..-++.++++.+. +++.+++.+... +.++-++|.+
T Consensus 50 G~~~y~sv~dlp~-~~~~DlAvi~vp~------~~v~~~l~e~~~~------gvk~avI~s~Gf------~~~~~~~l~~ 110 (291)
T PRK05678 50 GLPVFNTVAEAVE-ATGANASVIYVPP------PFAADAILEAIDA------GIDLIVCITEGI------PVLDMLEVKA 110 (291)
T ss_pred CeeccCCHHHHhh-ccCCCEEEEEcCH------HHHHHHHHHHHHC------CCCEEEEECCCC------CHHHHHHHHH
Confidence 3455666666555 3 3444555552 1234555555554 677766665443 2444568999
Q ss_pred HHHhcCcEEE
Q 019899 125 FAREKNIHVI 134 (334)
Q Consensus 125 ~~~~~~~~vi 134 (334)
+++++|+.++
T Consensus 111 ~a~~~girvl 120 (291)
T PRK05678 111 YLERKKTRLI 120 (291)
T ss_pred HHHHcCCEEE
Confidence 9999999999
|
|
| >PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination | Back alignment and domain information |
|---|
Probab=82.58 E-value=5.1 Score=30.23 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=44.6
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhc--CcEEE-Eeccccc
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREK--NIHVI-SDEIYGG 141 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~--~~~vi-~D~~~~~ 141 (334)
...+++.|.+.+++. ++..+++-.|.|..|..-+.. .+++.++...+. ++.|+ +||-|+.
T Consensus 36 ~~~~~~~l~~li~~~-----~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~TT 99 (135)
T PF03652_consen 36 REKDIEELKKLIEEY-----QIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLTT 99 (135)
T ss_dssp CCCCHHHHHHHHHHC-----CECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCSH
T ss_pred CchHHHHHHHHHHHh-----CCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChhH
Confidence 367899999999985 899999999988878765543 456666655443 77776 8998764
|
The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A. |
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=82.52 E-value=7.7 Score=30.46 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcc-----------------cCCCHHHHHHHHHHHHhcCcEEEEeccc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNP-ANPVG-----------------NIIPRETLYELLDFAREKNIHVISDEIY 139 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG-----------------~~~~~~~l~~i~~~~~~~~~~vi~D~~~ 139 (334)
|++.+.+.+...+.- ++.+|+++.+ .++.+ ..=+.++++++++.|+++|+.|+.|-+.
T Consensus 17 ~~~gi~~~l~yl~~l--G~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKDL--GVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHC--CCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 566666665433222 5676777655 22321 1125688999999999999999999775
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=81.95 E-value=25 Score=28.22 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCCCeEEecCCCCC---ChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEE
Q 019899 27 TPAVEILCFCLADHGNALLVPSPYYP---GFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILI 103 (334)
Q Consensus 27 ~~~~~~~~~~l~~~gd~vl~~~p~~~---~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~ 103 (334)
|.++..+.+. ...|.+|++..|... ....... ..|.++..+.. ...+++.+.+.+ ...++.+|++
T Consensus 17 T~~l~~~~~~-~~~g~~v~i~k~~~d~~~~~~~i~~-~lg~~~~~~~~-------~~~~~~~~~~~~---~~~~~dvviI 84 (190)
T PRK04296 17 TELLQRAYNY-EERGMKVLVFKPAIDDRYGEGKVVS-RIGLSREAIPV-------SSDTDIFELIEE---EGEKIDCVLI 84 (190)
T ss_pred HHHHHHHHHH-HHcCCeEEEEeccccccccCCcEec-CCCCcccceEe-------CChHHHHHHHHh---hCCCCCEEEE
Confidence 4555554444 346778887766322 2333344 55654433222 233445554443 1236777888
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccc
Q 019899 104 CNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGG 141 (334)
Q Consensus 104 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~ 141 (334)
...+. ++.+++.++++.++..|+.||+=.-..+
T Consensus 85 DEaq~-----l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 85 DEAQF-----LDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred Ecccc-----CCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 76643 6777788899998889999987655444
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=81.92 E-value=7.3 Score=33.61 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=43.3
Q ss_pred EecCCCCCChhhhhhhc--cCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHH
Q 019899 45 LVPSPYYPGFDRDIRFR--TGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYEL 122 (334)
Q Consensus 45 l~~~p~~~~~~~~~~~~--~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i 122 (334)
+..-|+|++..+... . -..-++.+|. ..-++.++++.+. +++.+++.+... +..+-++|
T Consensus 46 v~G~~~y~sv~dlp~-~~~~Dlavi~vpa------~~v~~~l~e~~~~------Gvk~avIis~Gf------~e~~~~~l 106 (286)
T TIGR01019 46 VLGLPVFDSVKEAVE-ETGANASVIFVPA------PFAADAIFEAIDA------GIELIVCITEGI------PVHDMLKV 106 (286)
T ss_pred ecCeeccCCHHHHhh-ccCCCEEEEecCH------HHHHHHHHHHHHC------CCCEEEEECCCC------CHHHHHHH
Confidence 334556777777665 3 2444555552 1234555555543 677666665443 33345789
Q ss_pred HHHHHhcCcEEE
Q 019899 123 LDFAREKNIHVI 134 (334)
Q Consensus 123 ~~~~~~~~~~vi 134 (334)
.++|+++|+.++
T Consensus 107 ~~~a~~~giril 118 (286)
T TIGR01019 107 KRYMEESGTRLI 118 (286)
T ss_pred HHHHHHcCCEEE
Confidence 999999999999
|
ATP citrate lyases appear to form an outgroup. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=80.88 E-value=12 Score=30.90 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=53.1
Q ss_pred cCcHHHHHHHHHHhcCCCCeEEe-cCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEE
Q 019899 24 AGATPAVEILCFCLADHGNALLV-PSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGIL 102 (334)
Q Consensus 24 ~g~~~~~~~~~~~l~~~gd~vl~-~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~ 102 (334)
.+|..|-.++- +|.+++-.|.+ ..+.-......++ ..|.+++..+. -|.+.|.++++ +...++
T Consensus 6 atG~~G~~v~~-~L~~~~~~V~~l~R~~~~~~~~~l~-~~g~~vv~~d~-------~~~~~l~~al~-------g~d~v~ 69 (233)
T PF05368_consen 6 ATGNQGRSVVR-ALLSAGFSVRALVRDPSSDRAQQLQ-ALGAEVVEADY-------DDPESLVAALK-------GVDAVF 69 (233)
T ss_dssp TTSHHHHHHHH-HHHHTTGCEEEEESSSHHHHHHHHH-HTTTEEEES-T-------T-HHHHHHHHT-------TCSEEE
T ss_pred CccHHHHHHHH-HHHhCCCCcEEEEeccchhhhhhhh-cccceEeeccc-------CCHHHHHHHHc-------CCceEE
Confidence 34555544443 33335544433 3333222334455 57898886664 26789999988 456677
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEE
Q 019899 103 ICNPANPVGNIIPRETLYELLDFAREKNIHVIS 135 (334)
Q Consensus 103 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~ 135 (334)
++.+... ....+.-..+++.|.+.|+..++
T Consensus 70 ~~~~~~~---~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 70 SVTPPSH---PSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp EESSCSC---CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred eecCcch---hhhhhhhhhHHHhhhccccceEE
Confidence 6666432 23344578889999988876664
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=80.79 E-value=7.2 Score=34.96 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=52.4
Q ss_pred EEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc-ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHH
Q 019899 44 LLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA-FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYEL 122 (334)
Q Consensus 44 vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i 122 (334)
-++..++++.....=-...+.++..++.. +.+. .+.+.|.+.+++ .-.+.++++++. +--|.+.+ .+.+
T Consensus 94 ~l~~~~~r~T~~K~Rv~s~nQQllRvD~E--e~~~~~~~~~ll~~~~~---~l~~~~~vVLSD--Y~KG~L~~---~q~~ 163 (467)
T COG2870 94 DLLRDKNRPTIVKLRVLSRNQQLLRLDFE--EKFPIEDENKLLEKIKN---ALKSFDALVLSD--YAKGVLTN---VQKM 163 (467)
T ss_pred ceEeecCCCceeeeeeecccceEEEeccc--ccCcchhHHHHHHHHHH---HhhcCCEEEEec--cccccchh---HHHH
Confidence 44555555544332111245677777763 2222 333444444443 223677777764 34577777 9999
Q ss_pred HHHHHhcCcEEEEeccccc
Q 019899 123 LDFAREKNIHVISDEIYGG 141 (334)
Q Consensus 123 ~~~~~~~~~~vi~D~~~~~ 141 (334)
+++|++.|++|++|--=.+
T Consensus 164 I~~ar~~~~pVLvDPKg~D 182 (467)
T COG2870 164 IDLAREAGIPVLVDPKGKD 182 (467)
T ss_pred HHHHHHcCCcEEECCCCcc
Confidence 9999999999999954333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 334 | ||||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-101 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 1e-101 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-100 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 9e-99 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 2e-93 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 3e-20 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 1e-19 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 9e-19 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 9e-19 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-18 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 4e-18 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 4e-18 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 5e-18 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 8e-18 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 3e-17 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 3e-16 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 4e-16 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 2e-15 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 8e-14 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 2e-13 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 6e-12 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 1e-11 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 3e-11 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 1e-10 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 2e-10 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 7e-10 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 1e-09 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 2e-09 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-09 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 3e-09 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 3e-09 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 3e-09 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 3e-09 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 8e-09 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 8e-09 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 1e-08 | ||
| 2egy_A | 397 | Crystal Structure Of Lysn, Alpha-Aminoadipate Amino | 1e-08 | ||
| 3nra_A | 407 | Crystal Structure Of An Aspartate Aminotransferase | 2e-08 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 3e-08 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 4e-08 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 4e-08 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 1e-07 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 4e-07 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 4e-07 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 4e-07 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 4e-07 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-06 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 2e-06 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 3e-06 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 8e-06 | ||
| 3dzz_A | 391 | Crystal Structure Of A Putative Plp-Dependent Amino | 8e-06 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 2e-05 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 3e-05 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 3e-05 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 7e-05 | ||
| 3g7q_A | 417 | Crystal Structure Of Valine-Pyruvate Aminotransfera | 9e-05 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 1e-04 | ||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 1e-04 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 2e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 2e-04 | ||
| 3hdo_A | 360 | Crystal Structure Of A Histidinol-Phosphate Aminotr | 2e-04 | ||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 3e-04 | ||
| 1c7n_A | 399 | Crystal Structure Of Cystalysin From Treponema Dent | 7e-04 |
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397 | Back alignment and structure |
|
| >pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta (Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A Resolution Length = 417 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|3HDO|A Chain A, Crystal Structure Of A Histidinol-Phosphate Aminotransferase From Geobacter Metallireducens Length = 360 | Back alignment and structure |
|
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 471 bits (1213), Expect = e-167
Identities = 149/337 (44%), Positives = 228/337 (67%), Gaps = 3/337 (0%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A FM + G V FDP ++V+ GAT A E + FCLAD G+A LVPSPYYP F+RD+R+
Sbjct: 92 IAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRW 151
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGV+LIP+HC S++NF + A+ +A+ A+K +KV+G+++ NP+NP+G + ++TL
Sbjct: 152 RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLK 211
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE---VDKDRVHIIYGLSKDLS 177
+L F + NIH++ DEIY ++F +FVS+AEIL+ +E +KD VHI+Y LSKD+
Sbjct: 212 SVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMG 271
Query: 178 LPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237
LPGFR G+IYS+N+ V+ A+K++ F +S TQ L +MLSD KF+ +L + R+ K
Sbjct: 272 LPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGK 331
Query: 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297
+ F GL+ +GI+C +++AGL+CW D+ L+ + E+ LW ++N K+NV+PGS
Sbjct: 332 RHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGS 391
Query: 298 ACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
+ C EPGWFR CF ++ + + + RI++ K
Sbjct: 392 SFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 466 bits (1202), Expect = e-165
Identities = 158/336 (47%), Positives = 232/336 (69%), Gaps = 5/336 (1%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
M FM+++ G V+FDP+ +VLTAGAT A E FCLAD G A+L+P+PYYPGFDRD+++
Sbjct: 95 MVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW 154
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE++P+HC S++ F + TAL++A+ +A KR ++V+G+L+ NP+NP+G + R LY
Sbjct: 155 RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELY 214
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD-----KDRVHIIYGLSKD 175
LL F +K IH+ISDEIY G+ F + F+S+ E+L+ D RVH++Y LSKD
Sbjct: 215 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKD 274
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS ++ V+AAA K++ F +S+ TQ LL +MLSD K + Y+ N +R+
Sbjct: 275 LGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL 334
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K+ V+GL++ GI C +AGL+CW DM L+ S + + E+ELW K++ +N++P
Sbjct: 335 KQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISP 394
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
GS+CHC EPGWFR CF +L + L ++R++
Sbjct: 395 GSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVG 430
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 1e-46
Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 45/326 (13%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
V DP ++V+T G++ + L D G+ + + +P YP + + +R G+ + +
Sbjct: 87 VDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRA-LGLVPVDLPTA 145
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
+ + G+++ +PANP G ++ + L++ A+ +
Sbjct: 146 PENRLQPVPADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGAS 196
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY--- 189
ISDEIY G + + V+ E+ D ++I SK S+ G+R G +
Sbjct: 197 FISDEIYHGIEYE-AKAVTALEL-------TDECYVINSFSKYFSMTGWRVG----WMVV 244
Query: 190 NESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLET-NKRRIKKLYDSFVAGL 246
E + +++ + I AP Q ++ L +Q L+ R + L
Sbjct: 245 PEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANR-----KLMLERL 299
Query: 247 KQLG-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA--CHCIE 303
+ G R + Y +AD+S L ++L A + VTPG
Sbjct: 300 PKAGFTRIAPPDGAFYVYADVSDLTDD-----SRAFAAEILEKAGVAVTPGLDFDPERGA 354
Query: 304 PGWFRCCF-TSLTHEDIPLVIERIQK 328
G R + + DI ++R++
Sbjct: 355 -GTLRFSYARAT--ADIEEGLDRLEA 377
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 8e-45
Identities = 64/325 (19%), Positives = 121/325 (37%), Gaps = 34/325 (10%)
Query: 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73
P QI+ T GAT A ++ + L + G+ ++ P Y + G E+
Sbjct: 78 GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKS-LGAEVDLWQIEE 136
Query: 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHV 133
+ + + L Q + I I N NP G ++ R L EL++ A E ++
Sbjct: 137 ENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYI 190
Query: 134 ISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV 193
+SDE+Y + S+ E+ D+ + LSK SLPG R G + + N V
Sbjct: 191 LSDEVYRSFSEL--DVPSIIEV-------YDKGIAVNSLSKTYSLPGIRIGWVAA-NHQV 240
Query: 194 LAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-G 250
+ + I A + L+ QE LE N+ +++ +++
Sbjct: 241 TDILRDYRDYTMICAGVFDDLVAQLALAHY---QEILERNRHILEENLAILDQWIEEEPL 297
Query: 251 IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310
+ + + ++ +P + +LL + + PG+ G+ R
Sbjct: 298 VSYIRPAVVSTSFVKIAVDMPME------DFCLQLLQEHGVLLVPGNRFE--RDGYVRLG 349
Query: 311 F-TSLTHEDIPLVIERIQKVAETCK 334
F E + +E++ +
Sbjct: 350 FACEQ--ETLIKGLEKLSQFLRRFD 372
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 2e-44
Identities = 63/325 (19%), Positives = 135/325 (41%), Gaps = 28/325 (8%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
+ ++LT+G + A+++ LA+ G +LVP P + + G+E+ +
Sbjct: 114 APLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAES-MGIEVKLYNLL 172
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
++ + L+ ++ K +++ NP+NP G++ + L ++L A + +
Sbjct: 173 PEKSWEIDLKQLEYLIDE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVP 226
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN-- 190
+++DEIYG +F + ++ +A + + GL+K +PG+R G I ++
Sbjct: 227 ILADEIYGDMVFSDCKYEPLATL-----STDVPILSCGGLAKRWLVPGWRLGWILIHDRR 281
Query: 191 ----ESVLAAAKKLTRFCS-ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245
+ KL++ Q L S+L T E+ +K D
Sbjct: 282 DIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYGA 339
Query: 246 LKQL-GIRCSESSAGLYCWADMSGLIPSYSE-KGELELWDKLLNIAKINVTPGSACHCIE 303
L + G+R S +Y + + + E + ++E ++L+ ++ P +
Sbjct: 340 LAAIPGLRPVRPSGAMYLMVGIE--MEHFPEFENDVEFTERLVAEQSVHCLPATCFEY-- 395
Query: 304 PGWFRCCFTSLTHEDIPLVIERIQK 328
P + R T + + RIQ+
Sbjct: 396 PNFIRVVIT-VPEVMMLEACSRIQE 419
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-43
Identities = 77/341 (22%), Positives = 141/341 (41%), Gaps = 29/341 (8%)
Query: 13 VSFDPSQIVLTAGATPAVE-ILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHC 71
+ I LT GA+P V ++ + + + +LVP P YP + I G L+P +
Sbjct: 153 FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGA-LVPYYL 211
Query: 72 RSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
+ + + + + AR RG+ VR +++ NP NP G ++ E Y+++ F + + +
Sbjct: 212 NESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGL 271
Query: 132 HVISDEIYGGSIF-GNEEFVSMAEILEAEEVDKDRVHIIY--GLSK-DLSLPGFRTG--V 185
+++DE+Y +I+ N++F S +I+ + ++ + ++ +SK G R G
Sbjct: 272 VLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFE 331
Query: 186 IYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF- 242
I ++ V K+ CS + Q L +++ K E + K + S
Sbjct: 332 ITGFSAPVREQIYKIASVNLCS-NITGQILASLVMNPPKASDESYASYKAEKDGILASLA 390
Query: 243 ------VAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWD------KLLNIA 289
+L GI C+E+ +Y + + + +LL
Sbjct: 391 RRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLEST 450
Query: 290 KINVTPGSACHCIE-PGWFRCCFTSLTH-EDIPLVIERIQK 328
I V PGS + FRC L + IP VI R
Sbjct: 451 GIVVVPGSGFGQVPGTWHFRCTI--LPQEDKIPAVISRFTV 489
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 3e-43
Identities = 71/339 (20%), Positives = 126/339 (37%), Gaps = 53/339 (15%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFC-LADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHC 71
F+ + +T GA ++ I +D + + +PY+P + + G L+ V
Sbjct: 95 THFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNA-AGARLVEVPA 153
Query: 72 RSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN- 130
T++F AL++ N RG++I +P NP G + ET+ +L D +K+
Sbjct: 154 D-TEHFQIDFDALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSK 206
Query: 131 -----IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGV 185
I +I+DE Y ++ + + + D + Y SK LSLPG R G
Sbjct: 207 EIGRPIFIIADEPYREIVYDGIKVPFVTKY-------YDNTLVCYSYSKSLSLPGERIGY 259
Query: 186 IYSYNESVLAAAKKLTRFCS-------ISAPT--QRLLISMLSDTKFIQEYLETNKRRIK 236
+ + V A+ C + AP+ Q++++ T I Y + R
Sbjct: 260 VLV-PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGDINAY---KENR-- 313
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296
D GL ++G C + Y + E +K + +
Sbjct: 314 ---DLLYEGLTRIGYHCFKPDGAFYMF-------VKALEDDSNAFCEKAKE-EDVLIVAA 362
Query: 297 SACHCIEPGWFRCCF-TSLTHEDIPLVIERIQKVAETCK 334
C PGW R + E I + +K+ +
Sbjct: 363 DGFGC--PGWVRISYCVDR--EMIKHSMPAFEKIYKKYN 397
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 1e-42
Identities = 72/336 (21%), Positives = 137/336 (40%), Gaps = 32/336 (9%)
Query: 1 MAGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR 59
++ + V DP S+ ++T G+ + L DHG+ +LVP+P YP
Sbjct: 84 ISHWYRDRYD--VQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAV 141
Query: 60 FRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETL 119
G ++ V +F + + K R +++ P+NP + +
Sbjct: 142 I-AGAQVRSVPLVPGIDFFNELERAIRESIP------KPRMMILGFPSNPTAQCVELDFF 194
Query: 120 YELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLP 179
++ A++ ++ V+ D Y ++ + S+ ++ A KD + LSK ++
Sbjct: 195 ERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGA----KDIAVEFFTLSKSYNMA 250
Query: 180 GFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISML-SDTKFIQEYLET-NKRRI 235
G+R G + N +++A ++ + T Q I+ L D + +++ +RR
Sbjct: 251 GWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRR- 308
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS-YSEKGELELWDKLLNIAKINVT 294
D V GL++ G A +Y WA IP Y+ G LE KLL AK++V+
Sbjct: 309 ----DVLVKGLREAGWMVENPKASMYVWAK----IPEPYAHLGSLEFAKKLLQDAKVSVS 360
Query: 295 PGSAC-HCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
PG + R + + + I+ +
Sbjct: 361 PGIGFGDYGD-DHVRFALIE-NRDRLRQAVRGIKAM 394
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 2e-42
Identities = 78/327 (23%), Positives = 138/327 (42%), Gaps = 36/327 (11%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVH-- 70
V P + +TA T A++++ L D G+ +LVP P YP + ++F G PV
Sbjct: 97 VDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGK---PVEYR 153
Query: 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
+++ I + + + + I + NP NP G + ++TL E+L+ A E
Sbjct: 154 TIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYE 207
Query: 131 IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTG-VIYSY 189
I VISDEIY + E +S + V ++ GLSK G+R G + +
Sbjct: 208 IPVISDEIYDLMTYEG-EHISPGSL-----TKDVPVIVMNGLSKVYFATGWRLGYMYFVD 261
Query: 190 NESVLAAAKKL------TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243
E+ L+ ++ R C + P Q I+ L+ +YL+ +++K+ D
Sbjct: 262 PENKLSEVREAIDRLARIRLCP-NTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIY 317
Query: 244 AGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302
L ++ GI ++ Y + + + E +L+ A + GS
Sbjct: 318 KRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDK----EFVLDVLHNAHVLFVHGSGFGEY 373
Query: 303 EPGWFRCCF-TSLTHEDIPLVIERIQK 328
G FR F + E + ++R +K
Sbjct: 374 GAGHFRAVFLPPI--EILEEAMDRFEK 398
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 4e-42
Identities = 73/328 (22%), Positives = 146/328 (44%), Gaps = 31/328 (9%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
+ +VL +G + + + + D G+ LVP P +P ++ + G+ + +CR
Sbjct: 100 STIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKA-YGIGMHFYNCR 158
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
+++ + + + + K + +++ NP+NP G+ R+ + +++ A E +
Sbjct: 159 PENDWEADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLP 212
Query: 133 VISDEIYGGSIFGNEE----FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVI-- 186
+ SDEIY G +F ++ F S+A+ V I+ G +K+L +PG+R G +
Sbjct: 213 LFSDEIYAGMVFKGKDPNATFTSVADF--ETTV---PRVILGGTAKNLVVPGWRLGWLLY 267
Query: 187 ---YSYNESVLAAAKKLTRF-CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242
+ S L K++ C Q L L +T QE+L+ +I++
Sbjct: 268 VDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESAMYL 325
Query: 243 VAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSE-KGELELWDKLLNIAKINVTPGSACH 300
+ + G+ + +Y + + + Y + K ++E ++KLL + V PG+ H
Sbjct: 326 YNHIGECIGLAPTMPRGAMYLMSRID--LEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH 383
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQK 328
PG+ R T E +ERI+
Sbjct: 384 A--PGFTRLTTTR-PVEVYREAVERIKA 408
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 1e-41
Identities = 69/330 (20%), Positives = 140/330 (42%), Gaps = 32/330 (9%)
Query: 13 VSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHC 71
+ DP ++I++ GA A + G +L+P+P + + + G + + V
Sbjct: 82 IEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVIL-AGGKPVEVPT 140
Query: 72 RSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
D F ++ L + K R ++I +P NP G ++ ++ L E+ DF E ++
Sbjct: 141 YEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDL 194
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
VISDE+Y I+ + S+A + +R + G SK ++ G+R G + +
Sbjct: 195 IVISDEVYEHFIYDDARHYSIASLDGM----FERTITVNGFSKTFAMTGWRLGFVAA-PS 249
Query: 192 SVLAAAKKLTRFCSISAPT--QRLLISMLS---DTKFIQEYLET-NKRRIKKLYDSFVAG 245
++ K + + T Q L K ++E + ++RR
Sbjct: 250 WIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR-----KLVWKR 304
Query: 246 LKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305
L ++G+ + Y + + + S+ + + +L A++ V PGSA G
Sbjct: 305 LNEMGLPTVKPKGAFYIFPRIRDTGLT-SK----KFSELMLKEARVAVVPGSAFGKAGEG 359
Query: 306 WFRCCF-TSLTHEDIPLVIERIQKVAETCK 334
+ R + T+ E + ++R+++V + K
Sbjct: 360 YVRISYATAY--EKLEEAMDRMERVLKERK 387
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-40
Identities = 68/335 (20%), Positives = 115/335 (34%), Gaps = 38/335 (11%)
Query: 13 VSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELI---P 68
D +++T G A+ + G+ + + P Y + + F G +
Sbjct: 97 APVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLD 156
Query: 69 VHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE 128
+T L++AF R L NP NP G + E + ++ A
Sbjct: 157 YVSADETRAGLDLTGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIGQIAALAAR 210
Query: 129 KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYS 188
VI+D++Y + + + VD + V I G SK SL G+R GV +
Sbjct: 211 YGATVIADQLYSRLRYAGASYTHLRAE---AAVDAENVVTIMGPSKTESLSGYRLGVAFG 267
Query: 189 YNESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLET-----NKRRIKKLYDS 241
+ +++A +KL S+ A Q +L + ++E R D
Sbjct: 268 -SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIR-----DE 318
Query: 242 FVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
+ L+ G+ AG Y + + L + E L A + VTPG+
Sbjct: 319 LLHVLRGCEGVFARTPQAGSYLFPRLPKLAVA-----PAEFVKILRLQAGVVVTPGTEFS 373
Query: 301 CIEPGWFRCCF-TSLTHEDIPLVIERIQKVAETCK 334
R F E RI + E +
Sbjct: 374 PHTADSVRLNFSQDH--EAAVAAARRIVTLVERYR 406
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 8e-40
Identities = 69/328 (21%), Positives = 134/328 (40%), Gaps = 40/328 (12%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
V P +++T G + A+ +A+ G+ +LV P+Y ++ + GV+LIPV R
Sbjct: 98 VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKI-AGVKLIPVTRR 156
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
+ FA + Q + +GI++ NP NP G + ++ + L++ A +
Sbjct: 157 MEEGFA-----IPQNLESFINE--RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLF 209
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES 192
+I DE+Y +F EF S I + D+V +I +SK S G R G + + NE
Sbjct: 210 LIVDEVYSEIVFRG-EFASALSI------ESDKVVVIDSVSKKFSACGARVGCLITRNEE 262
Query: 193 VLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLET-----NKRRIKKLYDSFVAG 245
+++ A KL + + P Q + +L+ + + +R ++ +
Sbjct: 263 LISHAMKLAQGRL-APPLLEQIGSVGLLNLD---DSFFDFVRETYRERV-----ETVLKK 313
Query: 246 LKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA---CHC 301
L++ R ++ S Y A++ + E L D ++ V P
Sbjct: 314 LEEHGLKRFTKPSGAFYITAELP--VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPG 371
Query: 302 IEPGWFRCCF-TSLTHEDIPLVIERIQK 328
+ R + + I+ + +
Sbjct: 372 LGKKEIRIACVLEK--DLLSRAIDVLME 397
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-38
Identities = 69/327 (21%), Positives = 110/327 (33%), Gaps = 46/327 (14%)
Query: 16 DPSQIVLTAGATPA-VEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74
D +I ++ GA +L F + + P YP + R E+I + C
Sbjct: 94 DAKEIFISDGAKVDLFRLLSFF--GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQE 151
Query: 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134
+ F + + +C+P NP G ++ ++ L ++ +A E I ++
Sbjct: 152 NAFFPEFPED-----------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILIL 200
Query: 135 SDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTG-------VIY 187
D Y I S+ EI +A + I SK L G R G + Y
Sbjct: 201 FDAAYSTFISDPSLPKSIFEIPDA----RFCAIEINSFSKPLGFAGIRLGWTVIPQELTY 256
Query: 188 SYNESVLAAAKKL--TRFCSISAPTQRLLISMLS---DTKFIQEYLETNKRRIKKLYDSF 242
+ V+ ++ T F S P Q ++ LS + I Y E D
Sbjct: 257 ADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRE---NS-----DLL 308
Query: 243 VAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA-CHC 301
L G Y W + + +L+D L I +TPG
Sbjct: 309 RKALLATGFEVFGGEHAPYLWVK----PTQ-ANISDRDLFDFFLREYHIAITPGIGFGRS 363
Query: 302 IEPGWFRCCFTSLTHEDIPLVIERIQK 328
G+ R EDI ER+Q
Sbjct: 364 GS-GFVRFSSLG-KREDILAACERLQM 388
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-38
Identities = 78/326 (23%), Positives = 139/326 (42%), Gaps = 54/326 (16%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
P I++T G++ + + D G+ +L+ +P YP + IRF PV C
Sbjct: 85 ADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAK---PVFCD 141
Query: 73 ST-DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
T ++ +++ K + I+I +P+NP+G +I R E+ +FA E
Sbjct: 142 FTVESLEEALSD-------------KTKAIIINSPSNPLGEVIDR----EIYEFAYENIP 184
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY-N 190
++ISDEIY G ++ + S E E + ++ +I G SK ++ G+R G Y N
Sbjct: 185 YIISDEIYNGLVYE-GKCYSAIEFDE----NLEKTILINGFSKLYAMTGWRIG--YVISN 237
Query: 191 ESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLET-----NKRRIKKLYDSFV 243
+ ++ A KL + ISAPT Q + K + + + ++RR +
Sbjct: 238 DEIIEAILKLQQNLFISAPTISQYAALKAF--EKETEREINSMIKEFDRRR-----RLVL 290
Query: 244 AGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE 303
+K G + Y + ++ + E KLL + +TPG
Sbjct: 291 KYVKDFGWEVNNPIGAYYVFPNIG--------EDGREFAYKLLKEKFVALTPGIGFGSKG 342
Query: 304 PGWFRCCF-TSLTHEDIPLVIERIQK 328
+ R + S E+I +ERI++
Sbjct: 343 KNYIRISYANSY--ENIKEGLERIKE 366
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 2e-38
Identities = 63/336 (18%), Positives = 119/336 (35%), Gaps = 35/336 (10%)
Query: 1 MAGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR 59
+ F + V+ D ++ + G + + C+ + G+ +L+P P Y + +
Sbjct: 94 IVDFYQRQYN--VTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVL 151
Query: 60 FRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETL 119
+ +P++ ++ + +D K + I + P NP G+ +E
Sbjct: 152 L-ADGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLIYLTYPNNPTGSTATKEVF 203
Query: 120 YELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLP 179
E + + + ++ D YG F + + S+ KD IY LSK ++
Sbjct: 204 DEAIAKFKGTDTKIVHDFAYGAFGF-DAKNPSILASENG----KDVAIEIYSLSKGYNMS 258
Query: 180 GFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISML-SDTKFIQEYLET-NKRRI 235
GFR G N+ ++ A KK + Q I L F++E RR
Sbjct: 259 GFRVGFAVG-NKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRR- 316
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
D F A L + + + G+Y W + P + L+ I V P
Sbjct: 317 ----DRFEAMLAKADLPFVHAKGGIYVWLE----TP--PGYDSEQFEQFLVQEKSILVAP 366
Query: 296 GSAC-HCIEPGWFRCCFTSLTHEDIPLVIERIQKVA 330
G + R + + R+ ++A
Sbjct: 367 GKPFGENGN-RYVRISLAL-DDQKLDEAAIRLTELA 400
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-38
Identities = 47/353 (13%), Positives = 91/353 (25%), Gaps = 52/353 (14%)
Query: 13 VSFDPSQIVLTAGATPAV----EILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIP 68
+ V T G+ + + L P + R G +
Sbjct: 101 IDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRI-LGQKFES 159
Query: 69 VHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE 128
+ I+ NP NP + E L + + A +
Sbjct: 160 FDLFEYRGEKLREKLESYLQTG------QFCSIIYSNPNNPTWQCMTDEELRIIGELATK 213
Query: 129 KNIHVISDEIYGGSIFGNE-----EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRT 183
++ VI D Y G F + E + + D + SK S G R
Sbjct: 214 HDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANY----TDNYILALSSSKAFSYAGQRI 269
Query: 184 GVIYSYNESVLAAAKKLTRF-------------------CSISAPTQRLLISML----SD 220
GV+ + L + Q + +ML
Sbjct: 270 GVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDG 329
Query: 221 TKFIQEYLETNKRRIKKLYDSFVA-GLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGE 278
++ + R+ + + F+ G + +E A + + + S
Sbjct: 330 EYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMDSS----- 384
Query: 279 LELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
+L +K + +T + C P + +R+Q +
Sbjct: 385 -KLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNA 435
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 7e-38
Identities = 55/334 (16%), Positives = 120/334 (35%), Gaps = 34/334 (10%)
Query: 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77
S+ ++T T + ++ + + +L+P + + R G + + +
Sbjct: 114 SRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGAN-LQTYPIFDKDG 172
Query: 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE-----KNIH 132
++ +L +A K V +++ P NP G + + +++ + +
Sbjct: 173 HYTTDSLVEALQSYNKDKVI---MILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVI 229
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES 192
+ D+ Y G + + S+ L + + G +K+ GFR G +
Sbjct: 230 AVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSD 289
Query: 193 ------VLAAAKKLTRFCSISAPT--QRLLISMLSDT----KFIQEYLETNKRRIKKLYD 240
+ A K L R S P Q + +L + K I++ ++T K R + +
Sbjct: 290 QTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKE 349
Query: 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300
A + + ++G + + + P L L++ I V +A
Sbjct: 350 VVYADQYHSHWQAYDFNSGYFMAIKVHDVDPE-------ALRKHLIDKYSIGVIALNATD 402
Query: 301 CIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
R F+ + +DIP V + I K + +
Sbjct: 403 ------IRIAFSCVEKDDIPHVFDSIAKAIDDLR 430
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 9e-38
Identities = 67/345 (19%), Positives = 136/345 (39%), Gaps = 34/345 (9%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGN----ALLVPSPYYPGFDRDIRFRTGVELIP 68
V DP I LT GA+ + + L G +++P P YP + I + +
Sbjct: 149 VPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAI-QVN 207
Query: 69 VHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE 128
+ + +A ++ L +A +A+ + + I NP NP G + R+ + +++ FA E
Sbjct: 208 YYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWE 266
Query: 129 KNIHVISDEIYGGSIF-GNEEFVSMAEIL-EAEEVDKDRVHII--YGLSKD-LSLPGFRT 183
+ + +++DE+Y +++ + F S ++L E V + + SK + G+R
Sbjct: 267 EKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG 326
Query: 184 G--VIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKF----IQEYLETNKRRI 235
G + + + + KL R C Q + +++ +++ + +
Sbjct: 327 GYMEVINLHPEIKGQLVKLLSVRLCP-PVSGQAAMDIVVNPPVAGEESFEQFSREKESVL 385
Query: 236 KKLY---DSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWD------KL 285
L Q+ GI C+ +Y + + + ++ KL
Sbjct: 386 GNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKL 445
Query: 286 LNIAKINVTPGSACHCIEPGW-FRCCFTSLTH-EDIPLVIERIQK 328
L I V PGS E + FR L E + V+++++
Sbjct: 446 LEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKD 488
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-36
Identities = 76/346 (21%), Positives = 141/346 (40%), Gaps = 45/346 (13%)
Query: 1 MAGFMS--QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI 58
AG + + L + + +P +V+T+GAT A+ +L L G+ ++V P++ + D
Sbjct: 60 PAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDA 119
Query: 59 RFRTGVELIPVHCRST-DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE 117
G + V T + F ++AL++A + R +L+ P NP G +
Sbjct: 120 FL-AGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNPTGLVFGER 172
Query: 118 TLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLS 177
L + AR ++ +ISDE+Y +G +R + K L
Sbjct: 173 ELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA-------PERTFTVGSAGKRLE 225
Query: 178 LPGFRTGVIYSY-NESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLET---- 230
G+R G + + + + ++ S SAPT Q + L + Y
Sbjct: 226 ATGYRVG--WIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGY 283
Query: 231 NKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAK 290
+RR D GL+ +G+R + A++ G + +L+ A+
Sbjct: 284 RRRR-----DLLAGGLRAMGLRVYVPEGTYFLMAELPGW---DAF--------RLVEEAR 327
Query: 291 INVTPGSACHCIEPG--WFRCCFTSLTHEDIPLVIERIQKVAETCK 334
+ + P SA + +P FR F T E++ L +ER+ +V + +
Sbjct: 328 VALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPR 372
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 4e-36
Identities = 65/337 (19%), Positives = 125/337 (37%), Gaps = 38/337 (11%)
Query: 1 MAGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR 59
A + G V DP + + G+ + L L + + LL+P YP + R
Sbjct: 72 AARWYEGRYG--VGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAAR 129
Query: 60 FRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETL 119
+ + R ++ + A+ + + + + +L+ P NP G +
Sbjct: 130 V-ASLRTFLIPLR--EDGLADLKAVPEGVWR------EAKVLLLNYPNNPTGAVADWGYF 180
Query: 120 YELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLP 179
E L AR+ + +I D Y ++ E S + A K+RV ++ LSK +L
Sbjct: 181 EEALGLARKHGLWLIHDNPYVDQVY-EGEAPSPLALPGA----KERVVELFSLSKSYNLA 235
Query: 180 GFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISML-SDTKFIQEYLET-NKRRI 235
GFR G +E LA +++ + R+ + L + + ++ Y +R
Sbjct: 236 GFRLGFALG-SEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERA- 293
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
LK + A +Y W +P +LE +L+ + + P
Sbjct: 294 ----LGMAEALKGVL-SLLPPRATMYLWGR----LP--EGVDDLEFGLRLVE-RGVALAP 341
Query: 296 GSA-CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
G + G+ R E++ +RI++ +
Sbjct: 342 GRGFGPGGK-GFVRIALVR-PLEELLEAAKRIREALD 376
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 8e-36
Identities = 61/338 (18%), Positives = 114/338 (33%), Gaps = 38/338 (11%)
Query: 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
A ++ G D S I +TAGAT A+ L +G+ ++ P Y + I
Sbjct: 77 AQKTERLYG--YQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIAL 134
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
+G + + + +F ++ + R +++ P NP + +
Sbjct: 135 -SGGIVKRMALQP-PHFRVDWQEFAALLSE------RTRLVILNTPHNPSATVWQQADFA 186
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
L I VISDE+Y F + S+ + ++R + K + G
Sbjct: 187 ALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQL----RERAVAVSSFGKTYHMTG 242
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISMLSD-----TKFIQEYLETNKR 233
++ G + + A +K+ ++ + S T Q L ML Y ++
Sbjct: 243 WKVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFY---RQK 298
Query: 234 RIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINV 293
R D V L + + + D S + S ++E L +
Sbjct: 299 R-----DILVNALNESRLEILPCEGTYFLLVDYSAV----STLDDVEFCQWLTQEHGVAA 349
Query: 294 TPGSACHCIEPG--WFRCCFTSLTHEDIPLVIERIQKV 329
P S R CF + ER++++
Sbjct: 350 IPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQL 386
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-35
Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 39/346 (11%)
Query: 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
A + G V +DP +++++T GAT A+ L + G+ +L+ P+Y + +
Sbjct: 72 AAQRRRHFG--VDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAM 129
Query: 61 RTGVELIPVHCR-STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETL 119
G + V FA AL +A + R ++I +P NP G ++ L
Sbjct: 130 -AGAHRVTVPLVPDGRGFALDADALRRAVTP------RTRALIINSPHNPTGAVLSATEL 182
Query: 120 YELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLP 179
+ + A N+ VI+DE+Y +F + + +A +R I +K +
Sbjct: 183 AAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGM----AERTITISSAAKMFNCT 238
Query: 180 GFRTGVIYSY-NESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLETNKRRIK 236
G++ G ++ ++A + ++ S Q + L ++ + ++
Sbjct: 239 GWKIG--WACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLR 293
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296
D AGL ++G +S + AD L E L + P
Sbjct: 294 ARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPL----GYDDSTEFCAALPEKVGVAAIPM 349
Query: 297 SA-CHCIEPG----------WFRCCFTSLTHEDIPLVIERIQKVAE 331
SA C R F + + I R+ +AE
Sbjct: 350 SAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEAIRRLSVLAE 394
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-35
Identities = 85/329 (25%), Positives = 144/329 (43%), Gaps = 46/329 (13%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPY---YPGFDRDIRFRTGVELIPV 69
P Q+V+T GA A+ L D G+ ++V SP Y I G V
Sbjct: 97 KDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQ---IILAGGTV-NVV 152
Query: 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK 129
+ NF S+ ++ K + +LI +P NP G + RE L L+ A+++
Sbjct: 153 ETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKR 206
Query: 130 NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189
N ++ISDE+Y ++ + EF S+ ++ E DR+ I G SK S+ G+R G + S
Sbjct: 207 NFYIISDEVYDSLVYTD-EFTSILDVSEG----FDRIVYINGFSKSHSMTGWRVGYLIS- 260
Query: 190 NESVLAAAKKLTRFCSISAPT---QRLLISMLSDTKFIQEYL--ETNKRRIKKLYDSFVA 244
+E V A K+ + S Q + L Y+ +R+ + V
Sbjct: 261 SEKVATAVSKIQSH-TTSCINTVAQYAALKALEVD---NSYMVQTFKERK-----NFVVE 311
Query: 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304
LK++G++ E Y + + G +++ ++LL K+ + PGSA P
Sbjct: 312 RLKKMGVKFVEPEGAFYLFFKVRG--------DDVKFCERLLEEKKVALVPGSAFLK--P 361
Query: 305 GWFRCCF-TSLTHEDIPLVIERIQKVAET 332
G+ R F TS+ E + ++RI+ +
Sbjct: 362 GFVRLSFATSI--ERLTEALDRIEDFLNS 388
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-34
Identities = 65/328 (19%), Positives = 135/328 (41%), Gaps = 43/328 (13%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPY---YPGFDRDIRFRTGVELIPV 69
+ + I++T G ++ L + + G+ +++P+P+ YP ++ G +I +
Sbjct: 86 LCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEM---VKLAEGTPVI-L 141
Query: 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK 129
F S + QA K + ++ P+NP G + + + + A E
Sbjct: 142 PTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA 195
Query: 130 NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189
+ V+SDEIY ++ + + +S+ + E +R + G +K ++ G+R G +
Sbjct: 196 GLWVLSDEIYEKILYDDAQHLSIGAA--SPEA-YERSVVCSGFAKTYAMTGWRVGFLAG- 251
Query: 190 NESVLAAAKKL-----TRFCSISAPTQRLLISMLS-DTKFIQEYLET-NKRRIKKLYDSF 242
++ AA K+ + C+ + Q I+ +QE L +RR
Sbjct: 252 PVPLVKAATKIQGHSTSNVCTFA---QYGAIAAYENSQDCVQEMLAAFAERR-----RYM 303
Query: 243 VAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301
+ L + G+ C + Y + ++ S L+ +LL+ ++ PG+A
Sbjct: 304 LDALNAMPGLECPKPDGAFYMFPSIAKTGRS-----SLDFCSELLDQHQVATVPGAAFGA 358
Query: 302 IEPGWFRCCF-TSLTHEDIPLVIERIQK 328
R + T L + I +ER++K
Sbjct: 359 --DDCIRLSYATDL--DTIKRGMERLEK 382
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-34
Identities = 62/353 (17%), Positives = 127/353 (35%), Gaps = 41/353 (11%)
Query: 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+ ++ + + DP +I++ GA ++ L D G+ +++ P+Y ++ +R
Sbjct: 71 SCLYGKIYQRQI--DPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRM 128
Query: 61 ----RTGVELIPVHCR----STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGN 112
+ L ++ ++ F L+ F+ K + I++ P NP+G
Sbjct: 129 AGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS------KTKAIILNTPHNPLGK 182
Query: 113 IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172
+ R+ L + D + + ISDE+Y ++ V +A + +R I
Sbjct: 183 VYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGM----WERTITIGSA 238
Query: 173 SKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFI----QE 226
K S+ G++ G ++ + + + + T Q L +
Sbjct: 239 GKTFSVTGWKLGWSIG-PAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPEC 297
Query: 227 YLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWD--- 283
Y + + ++ D V L +G++ G + AD+S L S+ E +D
Sbjct: 298 YFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKF 357
Query: 284 --KLLNIAKINVTPGSA------CHCIEPGWFRCCFTSLTHEDIPLVIERIQK 328
+ K+ P SA E R CF + E +
Sbjct: 358 VKWMTKHKKLTAIPVSAFCDSKSKPHFE-KLVRFCFIK-KDSTLDAAEEIFRA 408
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 5e-33
Identities = 74/326 (22%), Positives = 140/326 (42%), Gaps = 40/326 (12%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPY---YPGFDRDIRFRTGVELIPV 69
+S P + ++T G + A+ L + D G+ ++V SPY YP ++ G ++ V
Sbjct: 87 LSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYP----EMVRFAGGVVVEV 142
Query: 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK 129
+ F + +A + + +++ +P NP G + P+E L L A E
Sbjct: 143 ETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEH 196
Query: 130 NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189
+ +++SDEIY ++ E F S V + + G +K ++ G+R G
Sbjct: 197 DFYLVSDEIYEHLLYEGEHF-SPG------RVAPEHTLTVNGAAKAFAMTGWRIGYACG- 248
Query: 190 NESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244
+ V+ A + T +I+ Q + L++ + + ++E + ++ D +
Sbjct: 249 PKEVIKAMASVSRQSTTSPDTIA---QWATLEALTNQEASRAFVEMAREAYRRRRDLLLE 305
Query: 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304
GL LG++ S Y D S + P E+ ++LL A + V PG+
Sbjct: 306 GLTALGLKAVRPSGAFYVLMDTSPIAPD-----EVRAAERLLE-AGVAVVPGTDFAA--F 357
Query: 305 GWFRCCF-TSLTHEDIPLVIERIQKV 329
G R + TS E++ +ER +V
Sbjct: 358 GHVRLSYATSE--ENLRKALERFARV 381
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 8e-33
Identities = 56/356 (15%), Positives = 128/356 (35%), Gaps = 44/356 (12%)
Query: 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
A F ++LGQ + DP +++T G A+ L D G+ +++ P++ ++
Sbjct: 77 ASFFGELLGQEI--DPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMM 134
Query: 61 ----RTGVELIP-----VHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVG 111
V L P S+ N+ L F + + +++ P NP+G
Sbjct: 135 AGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLG 188
Query: 112 NIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYG 171
+ RE L + ++ ++ I+DE+Y ++ + +S+A + +R I
Sbjct: 189 KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM----WERTLTIGS 244
Query: 172 LSKDLSLPGFRTGVIYSY-NESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYL 228
K S G++ G + + ++ + + + PT Q + + +
Sbjct: 245 AGKTFSATGWKVG--WVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP 302
Query: 229 ETNKRRIKKLY----DSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSY-------SEKG 277
+ + + D + L+ +G++ + D+S E
Sbjct: 303 SSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPY 362
Query: 278 ELELWDKLLNIAKINVTPGSACHCIEP-----GWFRCCFTSLTHEDIPLVIERIQK 328
+ ++ + P S + + + R CF + + E+++K
Sbjct: 363 DRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRK 417
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-32
Identities = 68/353 (19%), Positives = 138/353 (39%), Gaps = 41/353 (11%)
Query: 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+ SQ++ + + +P +++++T GA A+ D G+ +++ P++ ++ ++
Sbjct: 87 SKLYSQLVDRTI--NPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKA 144
Query: 61 RTG----VELIPVHCRST---DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNI 113
G + L P T ++ L+ FN+ K + I+I P NP+G +
Sbjct: 145 AGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------KTKMIIINTPHNPLGKV 198
Query: 114 IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173
+ R L + + ++ N+ +SDE+Y +F E + + + +R I
Sbjct: 199 MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGM----WERTITIGSAG 254
Query: 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISMLSDT----KFIQEY 227
K SL G++ G Y E++L + + + C + T Q + K + Y
Sbjct: 255 KTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECY 313
Query: 228 LETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGL-IPSYSEKGELELWD--- 283
+ + D + L ++G+ + G + AD S L + D
Sbjct: 314 FNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRF 373
Query: 284 --KLLNIAKINVTPGSA------CHCIEPGWFRCCFTSLTHEDIPLVIERIQK 328
+ + P SA H E + R CF E++ E ++K
Sbjct: 374 TKWMTKSVGLQGIPPSAFYSEPNKHLGE-DFVRYCFFK-KDENLQKAAEILRK 424
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-32
Identities = 60/365 (16%), Positives = 111/365 (30%), Gaps = 54/365 (14%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA---------------DHGNALLV 46
GF ++ + I LT G+ A L + LL
Sbjct: 93 VGFFNRHYD--WNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLP 150
Query: 47 PSPYYPG----FDRDIRFRTGVELIPVHCRSTDNFAFSITALD-QAFNQARKRGVKVRG- 100
+P Y G F + I F +D +A G
Sbjct: 151 LTPEYIGYSDVHVEGQHFAAVLPHI-DEVTHDGEEGFFKYRVDFEALENLPALKEGRIGA 209
Query: 101 ILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160
I P NP GN++ E + L + A+ +I +I D Y G F N + +
Sbjct: 210 ICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAY-GMPFPNIIYSDAHLNWD--- 265
Query: 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISML 218
+ + + LSK + LPG RTG+I + + V+ A + +++ + ++
Sbjct: 266 ---NNTILCFSLSK-IGLPGMRTGIIVA-DAKVIEAVSAMNAVVNLAPTRFGAAIATPLV 320
Query: 219 S----DTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYS 274
+ E +++ L + + ++ W L S
Sbjct: 321 ANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPIS-- 378
Query: 275 EKGELELWDKLLNIAKINVTPGSACHCIEP--------GWFRCCFTSLTHEDIPLVIERI 326
L+L+++L + P R + + + I+ I
Sbjct: 379 ---TLDLYERLKA-KGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVI 433
Query: 327 QKVAE 331
+V
Sbjct: 434 GEVVR 438
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-32
Identities = 58/355 (16%), Positives = 123/355 (34%), Gaps = 39/355 (10%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
S + + + +T GA + L + G+ ++V P++ + +I
Sbjct: 105 IKLYSPIYNTEL--KAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELC 162
Query: 62 TG----VELIP-----VHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGN 112
G V + P + + ++A K + ++I P NP+G
Sbjct: 163 GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS------KTKAVIINTPHNPIGK 216
Query: 113 IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172
+ RE L L + + N+ +ISDE+Y F + E +
Sbjct: 217 VFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEI----GQLTLTVGSA 272
Query: 173 SKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLET 230
K + G+R G + S N +L+ A K ++P+ Q + ++D I + +
Sbjct: 273 GKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKM 332
Query: 231 NKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGL---------IPSYSEKGELEL 281
+ I K + F + +LG+ + + D S + ++ + +
Sbjct: 333 RQEYINK-FKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRI 391
Query: 282 WDKLLNIAKINVTPGSACHCIE-----PGWFRCCFTSLTHEDIPLVIERIQKVAE 331
L+N + P + + E R + +ER++ + +
Sbjct: 392 SHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAV-CKDDAYLENAVERLKLLKD 445
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 5e-31
Identities = 51/327 (15%), Positives = 113/327 (34%), Gaps = 46/327 (14%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADH--GNALLVPSPYYPGFDRDIRFRTGVELIPVH 70
+ ++++ T G+ + + + P+P+Y ++ +F + + +
Sbjct: 78 IELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKF-IKAKSLLMP 136
Query: 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
++F S+ + +V +++ +P NP G + E L + A + +
Sbjct: 137 LTKENDFTPSLNEKELQ---------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHD 187
Query: 131 IHVISDEIYGGSIFGNEEFVSMAEI-LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189
+I+DE Y I+ N S+ E + A V +I+ LSK S PG R+G I
Sbjct: 188 FILINDECYSE-IYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG- 245
Query: 190 NESVLAAAKKLTR---FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246
+ +L K R + + Q+ + D + + + +Y + +
Sbjct: 246 DSRLLEKYKAF-RAYLGYTSANAIQKASEAAWLDDRHAEF--------FRNIYANNLKLA 296
Query: 247 KQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPG- 305
+++ Y + + + L I P G
Sbjct: 297 RKIFKNTLIYPYSFYVYLP----VQN-----GENFAKTLYQNEGIITLPALYLGRNRIGA 347
Query: 306 -WFRCCFTSLTHEDIPLVIERIQKVAE 331
+ R +L ++ ++K E
Sbjct: 348 DYVR---LALVYDT-----PLLEKPLE 366
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 6e-31
Identities = 64/353 (18%), Positives = 116/353 (32%), Gaps = 49/353 (13%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHG------NALLVPSPYYPGFD 55
A + + LG +P I LT G+ A L A L +P Y G+
Sbjct: 85 AVLLRETLG--WDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYA 142
Query: 56 RDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIP 115
+ F + + + G+ I + P NP GN+I
Sbjct: 143 DSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGEETGM----ICVSRPTNPTGNVIT 198
Query: 116 RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKD 175
E L +L A + NI ++ D Y G F F + + + LSK
Sbjct: 199 DEELMKLDRLANQHNIPLVIDNAY-GVPFPGIIFSEARPL------WNPNIILCMSLSK- 250
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISMLSDTKFIQEYLETNKR 233
L LPG R G+I + N+ + A + S++ ++ M+ + L ++
Sbjct: 251 LGLPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMIKR----NDLLRLSET 305
Query: 234 RIKKLY----DSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKL 285
IK Y +A +++ + ++ W L + +E L+ +L
Sbjct: 306 VIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPIT-TE----LLYQRL 360
Query: 286 LNIAKINVTPGSACHCIEPGW-------FRCCFTSLTHEDIPLVIERIQKVAE 331
+ + PG R + + I ++ + + E
Sbjct: 361 KA-RGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP-EPDKIEAGVKILAEEIE 411
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 8e-31
Identities = 60/327 (18%), Positives = 105/327 (32%), Gaps = 34/327 (10%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD 75
+I ++ G+ + + + + V P YP + G+
Sbjct: 131 AADEIFISDGSKCDIARIQ-MMFGSKPTVAVQDPSYPVYVDTSVM-MGMTGDHNGTGFDG 188
Query: 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVIS 135
D F + + I C+P NP G R L EL++FAR+ ++
Sbjct: 189 IEYMVCNP-DNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVY 247
Query: 136 DEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTG-------VIYS 188
D Y I + ++ EI A + SK G R G + Y+
Sbjct: 248 DAAYALYISNPDCPKTIYEIPGA----DEVAIETCSFSKYAGFTGVRLGWTVVPKALKYA 303
Query: 189 YNESVLAAAKKL--TRFCSISAPTQRLLISMLS--DTKFIQEYLET-NKRRIKKLYDSFV 243
E V A ++ T F S Q ++ L K + ++ +
Sbjct: 304 NGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENA-----QILK 358
Query: 244 AGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC-HCI 302
++G Y W P K +++ ++L I TPGS
Sbjct: 359 TTFTEMGFSVYGGDDAPYIWVG----FP---GKPSWDVFAEILERCNIVTTPGSGYGPAG 411
Query: 303 EPGWFRCCFTSLTHEDIPLVIERIQKV 329
E G+ R + E+I + R ++
Sbjct: 412 E-GFVRASAFG-SRENILEAVRRFKEA 436
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 55/338 (16%), Positives = 110/338 (32%), Gaps = 55/338 (16%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYP-----------GFDRDIRFRTGV 64
+ ++ GA + L + V P YP + +
Sbjct: 118 GDDDVFVSDGAKCDISRLQVMF-GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYG 176
Query: 65 ELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLD 124
+ + C + F ++ + + I C+P NP G RE L +L++
Sbjct: 177 NIEYMRCTPENGFFPDLSTVG-----------RTDIIFFCSPNNPTGAAATREQLTQLVE 225
Query: 125 FAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTG 184
FA++ ++ D Y + ++ S+ EI A ++ S G R G
Sbjct: 226 FAKKNGSIIVYDSAYAMYMS-DDNPRSIFEIPGA----EEVAMETASFSNYAGFTGVRLG 280
Query: 185 -------VIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSD--TKFIQEYLET-NK 232
++YS V ++ T F S +Q ++ L+ + + + + +
Sbjct: 281 WTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKE 340
Query: 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292
+ + LG Y W P + +++ ++L +
Sbjct: 341 NT-----NIIIDTFTSLGYDVYGGKNAPYVWVH----FP---NQSSWDVFAEILEKTHVV 388
Query: 293 VTPGSA-CHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
TPGS E G+ R E+I R +++
Sbjct: 389 TTPGSGFGPGGE-GFVRVSAFG-HRENILEACRRFKQL 424
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-30
Identities = 74/343 (21%), Positives = 136/343 (39%), Gaps = 40/343 (11%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A F+ + + P IV+T G T A+++L L D G+ ++ +P Y
Sbjct: 84 LAAFLKKYDH--LEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQ 141
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGI-LICNPANPVGNIIPRETL 119
G ++ V DN + L++ + + +G KV+ I I NP+G + E
Sbjct: 142 L-GAKIEGV---PVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERR 197
Query: 120 YELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY--GLSKDLS 177
LL+ A + ++ +I D Y + + V + + V I LSK L
Sbjct: 198 KALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRV-------IVAGTLSKVLG 250
Query: 178 LPGFRTGVIYSYNESV---LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234
GFR G I + + + K+ FC+ A +Q + + L F + +LE
Sbjct: 251 -TGFRIGWIIA-EGEILKKVLMQKQPIDFCA-PAISQYIALEYLKRGYFEKYHLE----G 303
Query: 235 IKKLY----DSFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNI 288
Y D + L+ ++ AG++ + ++L+
Sbjct: 304 ALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGI------SFANELMER 357
Query: 289 AKINVTPGSACHCIEPG--WFRCCFTSLTHEDIPLVIERIQKV 329
+ V PG + E G R F+ + E+IP+ I+++ K+
Sbjct: 358 EGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKL 400
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 61/336 (18%), Positives = 130/336 (38%), Gaps = 45/336 (13%)
Query: 11 QAVSFDP-SQIVLTAGATPAVEILCFCLADH-----GNALLVPSPYYPGFDRDIRFRTGV 64
++ D ++I+ G+ A+ + + A++ P+P+Y ++ G
Sbjct: 84 DGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLL-GGG 142
Query: 65 ELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLD 124
E+ +C + +F ++ + + + + + +C+P NP G+++ + E+ D
Sbjct: 143 EIHFANCPA-PSFNPDWRSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFD 195
Query: 125 FAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTG 184
+ + SDE Y F + + + + ++ + LSK ++PG R+G
Sbjct: 196 LQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSG 255
Query: 185 VIYSYNESVLAAAKKLTR---FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241
+ + +L R ++S P QR I+ D ++++ N+R ++ ++
Sbjct: 256 FVAG-DAELLKNFLLY-RTYHGSAMSIPVQRASIAAWDD----EQHVIDNRRLYQEKFER 309
Query: 242 FVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA--- 298
+ L+Q+ A Y W +P + +L L A I V PG
Sbjct: 310 VIPILQQV-FDVKLPDASFYIWLK----VP---DGDDLAFARNLWQKAAIQVLPGRFLAR 361
Query: 299 -CHCIEPG--WFRCCFTSLTHEDIPLVIERIQKVAE 331
PG + R +L + K AE
Sbjct: 362 DTEQGNPGEGYVR---IALVADV-----ATCVKAAE 389
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 9e-27
Identities = 49/344 (14%), Positives = 93/344 (27%), Gaps = 64/344 (18%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNAL--------LVPSPYYPGFDRDIRFRTGVELI 67
IV G T + L L+ + A + +P+YP F ++
Sbjct: 122 KDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKG-- 179
Query: 68 PVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAR 127
+A + N + ++ +P NP G L +
Sbjct: 180 -------YVWAGNAANYVNVSNP------EQYIEMVTSPNNPEG------LLRHAV---- 216
Query: 128 EKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIY 187
K I D +Y + + D +++ +SK G R G
Sbjct: 217 IKGCKSIYDMVYYW-----PHYTPIKYK-------ADEDILLFTMSKFTGHSGSRFGWAL 264
Query: 188 SYNESVLAAAKKLTRFCSISAP--TQRLLISMLSDTK-FIQEYLETNKRRIKKLYDSFVA 244
+ESV + P TQ + +L + ++ T + +
Sbjct: 265 IKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRE 324
Query: 245 GLKQL--------GIRCSESSAGLYCWADMSGLIPS------YSEKGELELWDKLLNIAK 290
+ E YC PS E E + + +
Sbjct: 325 RWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGR 384
Query: 291 INVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
IN G + R T +D ++ ++ + + +
Sbjct: 385 INTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKAKR 426
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 60/394 (15%), Positives = 129/394 (32%), Gaps = 82/394 (20%)
Query: 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLA-----DHGNALLVPSPYYPGFD 55
F+ ++ + + + + T G T A+ LA G+ + + P + +
Sbjct: 148 NYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL 207
Query: 56 RDIRFRTGVELIPVHCRST--DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNI 113
R EL+ V S +++ +++ + ++ +++ NP NP
Sbjct: 208 RIPEL-KDYELVEVDLHSYEKNDWEIEPNEIEKLKDP------SIKALIVVNPTNPTSKE 260
Query: 114 IPRETLYELLDFARE-KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172
L + + + +ISDE+YG + F S+ ++ ++Y
Sbjct: 261 FDTNALNAIKQAVEKNPKLMIISDEVYGAFVP---NFKSIYSVV------PYNTMLVYSY 311
Query: 173 SKDLSLPGFRTGVI--------------------------YSYNESVLAAAKKLTRFCSI 206
SK G+R GVI YS K + R C+
Sbjct: 312 SKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCAD 371
Query: 207 SAPTQRLLISMLS-------------------DTKFIQEYLETNKRRIKKLYDSFVAGLK 247
S + LS + Y++ ++ + + YD ++
Sbjct: 372 SRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ 431
Query: 248 QLGIRCSESSAGLYCWADMSGLIPSYSEKG----------ELELWDKLLNIAKINVTPGS 297
++++ Y D+ L K +++ KL + + G
Sbjct: 432 APKD-ETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGV 490
Query: 298 ACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
+PG R +L ED L+ +++ ++ +
Sbjct: 491 GFGA-KPGELRVSQANLPTEDYALIGKQVLELLK 523
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-26
Identities = 48/253 (18%), Positives = 96/253 (37%), Gaps = 22/253 (8%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
Q L + S I+ G T ++ + L ++ +P + + R + ++G E+
Sbjct: 66 QALARHHQVPASWILAGNGETESIFTVASGLK--PRRAMIVTPGFAEYGRALA-QSGCEI 122
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA 126
R D + L A +A + + +C P NP G + R L + D
Sbjct: 123 RRWSLREADGWQ-----LTDAILEALTPDLDC--LFLCTPNNPTGLLPERPLLQAIADRC 175
Query: 127 REKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVI 186
+ NI++I DE + +F+ D + ++ L+K ++PG R G +
Sbjct: 176 KSLNINLILDEAF-------IDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYL 228
Query: 187 YSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246
+ +++ +A ++ S++A L D+ + Q + + Y L
Sbjct: 229 VNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQ----AL 284
Query: 247 KQL-GIRCSESSA 258
QL + A
Sbjct: 285 CQLPLLTVYPGRA 297
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 28/255 (10%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
+ + + IVL GA+ +E+ + +L+ P Y ++ + + + GV +
Sbjct: 68 KSIENYLKLKDIGIVLGNGASEIIELSISLF-EK---ILIIVPSYAEYEINAK-KHGVSV 122
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA 126
+ + +N + + ++I NP NP G +I +E +L A
Sbjct: 123 VFSY--LDENMCIDYEDIISKIDDVDS-------VIIGNPNNPNGGLINKEKFIHVLKLA 173
Query: 127 REKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK-DRVHIIYGLSKDLSLPGFRTGV 185
EK +I DE + EF E+ + II ++K ++PG R G
Sbjct: 174 EEKKKTIIIDEAFI-------EFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGY 226
Query: 186 IYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245
+ N+ + A K +I+ + I+ L DT +I+E L K+ K+ +
Sbjct: 227 GITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIE----E 282
Query: 246 LKQLGI--RCSESSA 258
L ++G R A
Sbjct: 283 LNKIGFIKRVFSPHA 297
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 62/344 (18%), Positives = 141/344 (40%), Gaps = 44/344 (12%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+ ++ + G + + I++T+G+ A++++ + G+ ++V +P Y + F
Sbjct: 127 LMKWLGKRYGIS---QDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNF 183
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGI-LICNPANPVGNIIPRETL 119
+ I + D+ + L++ + + +G KV+ + + NP G + +
Sbjct: 184 Y-EPQYIQI---PLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRR 239
Query: 120 YELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY--GLSKDLS 177
LL+ A E + V+ D+ YG + + + V IY SK L+
Sbjct: 240 KYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRV-------IYLGTFSKILA 292
Query: 178 LPGFRTGVIYSYNESV---LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234
PGFR G + + + + AK+ T C+ + Q + + ++++
Sbjct: 293 -PGFRIGWMVG-DPGIIRKMEIAKQSTDLCT-NVFGQVVAWRYVDGGYL-EKHIP----E 344
Query: 235 IKKLY----DSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLN 287
I+K Y D+ + L++ G++ ++ G++ W + I S ++ ++ +
Sbjct: 345 IRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDS------KKMLERAIK 398
Query: 288 IAKINVTPGSACHCIEPG--WFRCCFTSLTHEDIPLVIERIQKV 329
+ PG A + R FT + + I I+R+ +
Sbjct: 399 -KGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAET 441
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 63/344 (18%), Positives = 127/344 (36%), Gaps = 38/344 (11%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+ + ++ G D ++ T G+ A++++ D + ++ P Y G R
Sbjct: 94 ILKLLERMYG-ITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQ 152
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILI-CNP--ANPVGNIIPRE 117
+ V ++ + L++ ++ K G + I NP G E
Sbjct: 153 Y-LANFVVV---PLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLE 208
Query: 118 TLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY--GLSKD 175
L++ A + ++ ++ D+ YG + E + +I E V + SK
Sbjct: 209 KRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERV-------VLLNTFSKV 261
Query: 176 LSLPGFRTGVIYSYNESV---LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232
L+ PG R G++ ++ + AK+ CS A T RL L E L+
Sbjct: 262 LA-PGLRIGMVAG-SKEFIRKIVQAKQSADLCS-PAITHRLAARYLERYDL-LEQLKPTI 317
Query: 233 RRIKKLYDSFVAGLKQ-----LGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLN 287
++ + L++ G++ +S GL+ W + ++ E+++
Sbjct: 318 ELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTW------EMFEYAKR 371
Query: 288 IAKINVTPGSACHCIEPG--WFRCCFTSLTHEDIPLVIERIQKV 329
K+ PG + R F E I I+R+++V
Sbjct: 372 -KKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREV 414
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-24
Identities = 51/379 (13%), Positives = 120/379 (31%), Gaps = 76/379 (20%)
Query: 13 VSFDPSQ---IVLTAGATPAVEILCFCLA-----DHGNALLVPSPYYPGFDRDIRFRTG- 63
PS+ + G T A+ + L G+ + + P + +
Sbjct: 158 ADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYA 217
Query: 64 VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELL 123
+E + ++ + N+ + + LD+ + ++ NP+NP + + +L +
Sbjct: 218 LEEVAINADPSLNWQYPDSELDKLKDP------AIKIFFCVNPSNPPSVKMDQRSLERVR 271
Query: 124 DFAREK--NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF 181
+ E ++ +++D++YG +F S+ I + ++Y SK G+
Sbjct: 272 NIVAEHRPDLMILTDDVYGTFAD---DFQSLFAIC------PENTLLVYSFSKYFGATGW 322
Query: 182 RTGVI--------------------------YSYNESVLAAAKKLTRFCSISAPTQRLLI 215
R GV+ Y + + K + R + S
Sbjct: 323 RLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHT 382
Query: 216 SMLSDTKFIQ------EYLETNKRRIKKLYDSFV-----AGLKQLGIRCSES--SAGLYC 262
+ LS + +Q L K + ++LG+ + Y
Sbjct: 383 AGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLRDENAVDYYT 442
Query: 263 WADMSGLIPSYSEKG----------ELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT 312
D+ + + ++ ++ + I + PG R
Sbjct: 443 LIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNR-PSGRASLA 501
Query: 313 SLTHEDIPLVIERIQKVAE 331
+L + + ++K+A+
Sbjct: 502 NLNEYEYAAIGRALRKMAD 520
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 58/302 (19%), Positives = 108/302 (35%), Gaps = 46/302 (15%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
++ + G PA+ +L L + +++ P Y F+ ++ ELI +
Sbjct: 86 WKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVK-NNNRELIISPLQ 144
Query: 73 STDNFAFSI--TALDQAFNQARKRGVKVRGILI-CNPANPVGNIIPRETLYELLDFAREK 129
+N + + ++ + + I CNP NPVG + ++ L +L D +
Sbjct: 145 KLENGNYIMDYEDIENKIKDVK--------LFILCNPHNPVGRVWTKDELKKLGDICLKH 196
Query: 130 NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189
N+ +ISDEI+ I + + MA I ++E + +K ++ G ++ +
Sbjct: 197 NVKIISDEIHSDIILKKHKHIPMASI--SKEF-EKNTITCMAPTKTFNIAGLQSSYVVLP 253
Query: 190 NESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFI-------------QEYLETNKRRIK 236
+E I + S EYLE+N
Sbjct: 254 DEKDYKLLDDAFTRIDIKRN------NCFSLVATEASYNNGESWLESFLEYLESNIDFAI 307
Query: 237 KLYDSFVAGLKQLGIRCSESSAGLY-CWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
+ +L +R E + Y W D S L S EL L+ K+ +
Sbjct: 308 ---KYINENMPKLKVRKPEGT---YLLWVDFSALGLSDE-----ELESILVQKGKVALNQ 356
Query: 296 GS 297
G+
Sbjct: 357 GN 358
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 5e-22
Identities = 65/300 (21%), Positives = 111/300 (37%), Gaps = 41/300 (13%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
SFD IV G PA+ I G A+L+ SP YP F R +R +L+ +
Sbjct: 85 YSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVR-LNNRKLVSNSLK 143
Query: 73 STDN-FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
+ F L+ + VK+ L+CNP NP G + RE L ++ ++ ++
Sbjct: 144 EENGLFQIDFEQLEN---DIVENDVKL--YLLCNPHNPGGRVWEREVLEQIGHLCQKHHV 198
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
++SDEI+ E VS + + + KD ++ +K ++ G + N
Sbjct: 199 ILVSDEIHQDLTLFGHEHVSFNTV--SPDF-KDFALVLSSATKTFNIAGTKNSYAIIENP 255
Query: 192 SVLAAAKKLTRFCSISAPTQRLLISMLSDTKFI-------------QEYLETNKRRIKKL 238
++ A K + S L + LE N +
Sbjct: 256 TLCAQFKHQQLVNNHHEV------SSLGYIATETAYRYGKPWLVALKAVLEENIQFAV-- 307
Query: 239 YDSFVAGLKQLGIRCSESSAGLY-CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297
+ F +L + + + Y W D S + L+ L + AK+ + GS
Sbjct: 308 -EYFAQEAPRLKVMKPQGT---YLIWLDFSDYGLTDD-----ALFTLLHDQAKVILNRGS 358
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 5e-22
Identities = 55/300 (18%), Positives = 108/300 (36%), Gaps = 42/300 (14%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
+ I+ G PA+ I ++ G+A+L+ SP Y F R IR L+ +
Sbjct: 115 YAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIR-LNDHRLVENSLQ 173
Query: 73 STDN-FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
+ F L++ VK+ L+C+P NP G + + L ++ + ++ +
Sbjct: 174 IINGRFEIDFEQLEK---DIIDNNVKI--YLLCSPHNPGGRVWDNDDLIKIAELCKKHGV 228
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
++SDEI+ S+ + KD I+ +K ++ G + NE
Sbjct: 229 ILVSDEIHQDLALFGNTHHSLNTL--DASY-KDFTIILSSATKTFNIAGTKNSFAIIQNE 285
Query: 192 SVLAAAKKLTRFCSISAPTQRLLISMLSDTKFI-------------QEYLETNKRRIKKL 238
S+ + + + + +E N + + K
Sbjct: 286 SLRRKFQYRQLANNQHEV------PTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIK- 338
Query: 239 YDSFVAGLKQLGIRCSESSAGLY-CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297
+ ++ + E + Y W D S + +L +KL N AK+ + G+
Sbjct: 339 ---ELEAKTKIKVMEPEGT---YLVWLDFSAYAIAQP-----QLSEKLQNEAKVVLNDGA 387
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 7e-22
Identities = 66/340 (19%), Positives = 131/340 (38%), Gaps = 44/340 (12%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
+ + + P ++++T G+ A++++ D G+ +L+ +P Y G + R + G
Sbjct: 81 AFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQ-GPRF 139
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGI-LICNPANPVGNIIPRETLYELLDF 125
+ V + AL++ + + R + LI + NP G + P LL
Sbjct: 140 LTV---PAGEEGPDLDALEEVL-----KRERPRFLYLIPSFQNPTGGLTPLPARKRLLQM 191
Query: 126 AREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY--GLSKDLSLPGFRT 183
E+ + V+ D+ Y FG S+ E+ A E V IY SK LS PG R
Sbjct: 192 VMERGLVVVEDDAYRELYFGEARLPSLFEL--AREAGYPGV--IYLGSFSKVLS-PGLRV 246
Query: 184 GVIYSYNESV---LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY- 239
+ + L AK+ + Q L+ + ++E R++++Y
Sbjct: 247 AFAVA-HPEALQKLVQAKQGADLHT-PMLNQMLV------HELLKEGFSERLERVRRVYR 298
Query: 240 ---DSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINV 293
+ + L + +R + G++ W ++ + + L+ + L +
Sbjct: 299 EKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSA------EGLFRRALE-ENVAF 351
Query: 294 TPGSACHCIEPG--WFRCCFTSLTHEDIPLVIERIQKVAE 331
PG G R + +L E I + R+ + +
Sbjct: 352 VPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALK 391
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 1e-21
Identities = 60/301 (19%), Positives = 109/301 (36%), Gaps = 45/301 (14%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
+ D +V V L ++ G +++ +P Y F + I ++PV
Sbjct: 83 TAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-GNQRTVMPVALE 141
Query: 73 STDN-FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
+ + + L+ K K+ +L+C+P NP G + + L + D +
Sbjct: 142 KQADGWFCDMGKLEA---VLAKPECKI--MLLCSPQNPTGKVWTCDELEIMADLCERHGV 196
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
VISDEI+ ++G + + + V + ++ SK ++P N
Sbjct: 197 RVISDEIHMDMVWGEQPHIPWS------NVARGDWALLTSGSKSFNIPALTGAYGIIENS 250
Query: 192 SVLAA-AKKLTRFCSISAPTQRLLISMLSDTKFI-------------QEYLETNKRRIKK 237
S A L +S+P S+L+ T I + YL+ N I
Sbjct: 251 SSRDAYLSALKGRDGLSSP------SVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIA- 303
Query: 238 LYDSFVAGLKQLGIRCSESSAGLY-CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296
D A +L + +S+ Y W D+ L + L L+ K+ + PG
Sbjct: 304 --DKMNAAFPELNWQIPQST---YLAWLDLRPLNIDDN-----ALQKALIEQEKVAIMPG 353
Query: 297 S 297
Sbjct: 354 Y 354
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 93.3 bits (233), Expect = 1e-21
Identities = 52/300 (17%), Positives = 108/300 (36%), Gaps = 41/300 (13%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
V +G PA+ + G+ +LV P Y F I G +I
Sbjct: 81 ARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIE-GNGRRVISSDLI 139
Query: 73 STDN-FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
++ ++ + L++ + V++ ++ CNP NP+G E + + + + +
Sbjct: 140 YENSKYSVNWADLEE---KLATPSVRM--MVFCNPHNPIGYAWSEEEVKRIAELCAKHQV 194
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
+ISDEI+G + +E+ + + K+ V + SK +L N
Sbjct: 195 LLISDEIHGDLVLTDEDITPAFTV--DWDA-KNWVVSLISPSKTFNLAALHAACAIIPNP 251
Query: 192 SVLAAAKKLTRFCSISAPTQRLLISMLSDTKFI-------------QEYLETNKRRIKKL 238
+ A A++ I P ++L+ I ++ L N +
Sbjct: 252 DLRARAEESFFLAGIGEP------NLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAR-- 303
Query: 239 YDSFVAGLKQLGIRCSESSAGLY-CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297
+ + ++ + S +S Y W D+S L + + L + ++ G+
Sbjct: 304 -EFLAKEVPEVKVLDSNAS---YLAWVDISALGMNAE-----DFCKYLREKTGLIISAGN 354
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 1e-21
Identities = 55/300 (18%), Positives = 104/300 (34%), Gaps = 41/300 (13%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
I+ TAG PAV G+ +++ +P Y F I+ ++I
Sbjct: 85 WDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-NQERKIIECELL 143
Query: 73 STDN-FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
D + L++ ++ + K +L C+P NPVG + ++ L ++ D + ++
Sbjct: 144 EKDGYYTIDFQKLEK---LSKDKNNKA--LLFCSPHNPVGRVWKKDELQKIKDIVLKSDL 198
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
+ SDEI+ I E I E++ D+ SK ++ G I N
Sbjct: 199 MLWSDEIHFDLIMPGYEHTVFQSI--DEQL-ADKTITFTAPSKTFNIAGMGMSNIIIKNP 255
Query: 192 SVLAAAKKLTRFCSISAPTQRLLISMLSDTKFI-------------QEYLETNKRRIKKL 238
+ K S + L + ++ N+R +K
Sbjct: 256 DIRERFTKSRDATSGMPF------TTLGYKACEICYKECGKWLDGCIKVIDKNQRIVK-- 307
Query: 239 YDSFVAGLKQLGIRCSESSAGLY-CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297
D F ++ E + Y W D L + + + +++ A+I G
Sbjct: 308 -DFFEVNHPEIKAPLIEGT---YLQWIDFRALKMDHK-----AMEEFMIHKAQIFFDEGY 358
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 2e-21
Identities = 47/332 (14%), Positives = 101/332 (30%), Gaps = 56/332 (16%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGN----ALLVPSPYYPGFDRDIRFRTGVELIPVHC 71
+ IV+ G+T + L+ +++ +P+Y + + +
Sbjct: 90 EDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGM------ 143
Query: 72 RSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNI 131
+ + A K+G + L+ +P NP G I +++ +
Sbjct: 144 -----YKWEGDAWG-----FDKKGPYI--ELVTSPNNPDGTI-----RETVVNRPDDDEA 186
Query: 132 HVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE 191
VI D Y + + +D +++ SK G R G ++
Sbjct: 187 KVIHDFAYYW-----PHYTPITR-------RQDHDIMLFTFSKITGHAGSRIGWALVKDK 234
Query: 192 SVLAAAKKLTRFCSI--SAPTQ-------RLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242
V + SI S +Q +L + + + + +K ++
Sbjct: 235 EVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKL 294
Query: 243 VAGLKQLGIRCSESSAGLYCWADMSGLIPSYS-----EKGELELWDKLLNIAKINVTPGS 297
+K+ +C L + K E +L +L K+ G
Sbjct: 295 REVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRR-HKVMSRAGE 353
Query: 298 ACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
C + R S + + +ER+ +
Sbjct: 354 RCGS-DKKHVRVSMLS-REDVFNVFLERLANM 383
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 6e-21
Identities = 57/341 (16%), Positives = 130/341 (38%), Gaps = 44/341 (12%)
Query: 11 QAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVH 70
S + +T+G+ + + + + G+ +L+ P Y G + + G +I V
Sbjct: 102 YPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPL-GCNIINV- 159
Query: 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGI-------LICNPANPVGNIIPRETLYELL 123
++D +L ++ + K + N NP GN + E E+
Sbjct: 160 --ASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIY 217
Query: 124 DFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY--GLSKDLSLPGF 181
+ AR+ + +I D+ Y F + ++ + RV I SK +S G
Sbjct: 218 ELARKYDFLIIEDDPYYFLQFNKFRVPTFLS-MDVD----GRV--IRADSFSKIIS-SGL 269
Query: 182 RTGVIYSYNESV---LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238
R G + + + + +++ S Q ++ +L + + +E + R+
Sbjct: 270 RIGFLTG-PKPLIERVILHIQVSTLHP-STFNQLMISQLLHE--WGEEGFMAHVDRVIDF 325
Query: 239 Y----DSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI 291
Y D+ +A + +AG++ W + ++ EL + +K + +
Sbjct: 326 YSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK----VKGINDVKEL-IEEKAVK-MGV 379
Query: 292 NVTPGSACHCIEPG---WFRCCFTSLTHEDIPLVIERIQKV 329
+ PG+A + + R F+S + E + + + + ++
Sbjct: 380 LMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQL 420
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-20
Identities = 54/328 (16%), Positives = 108/328 (32%), Gaps = 47/328 (14%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
Q+L + S D + I++T G T A + G+ L+ P + ++ R E+
Sbjct: 57 QMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRM-YEHEV 113
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA 126
++ +A + +CNP NP G ++ R + LL+
Sbjct: 114 CFYP-------------SNEDIGEADFSNMDF--CWLCNPNNPDGRLLQRTEILRLLN-- 156
Query: 127 REKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVI 186
+ + D+ Y F + I A+ + + ++Y S +PG R G I
Sbjct: 157 DHPDTTFVLDQSY-------VSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYI 209
Query: 187 YSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246
+ N+ + + +++A +L + +R L
Sbjct: 210 VA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFIT----AL 264
Query: 247 KQL-GIRCSESSAG--LYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE 303
+L G+ S L + EL +L + + S ++
Sbjct: 265 NRLDGVEVHPSGTTFFLLRLKKGTA----------AELKKYMLEEYNMLIRDASNFRGLD 314
Query: 304 PGWFRCCFTSLTHEDIPLVIERIQKVAE 331
+ R T+ L I+ ++ E
Sbjct: 315 ESYVR--ITTQRPAQNQLFIKALETFLE 340
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 4e-19
Identities = 55/298 (18%), Positives = 94/298 (31%), Gaps = 48/298 (16%)
Query: 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73
P I + I + ++VP+P YP F + T E I +
Sbjct: 78 QARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLS-ATQREGIFIDATG 136
Query: 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHV 133
N +++ F + G + IL+CNP NP+G + E L EL D A + V
Sbjct: 137 GINLH----DVEKGF----QAGARS--ILLCNPYNPLGMVFAPEWLNELCDLAHRYDARV 186
Query: 134 ISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV 193
+ DEI+ +F + A + + I SK ++ G + I N S
Sbjct: 187 LVDEIHAPLVFDG-QHTVAAGVSDT---AASVCITITAPSKAWNIAGLKCAQIIFSNPSD 242
Query: 194 LAAAKKLTRFCSISAPTQRLLISMLSDTKFI-------------QEYLETNKRRIKKLYD 240
++L+ S L YL+ N +
Sbjct: 243 AEHWQQLSPVIKDG-------ASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLL---H 292
Query: 241 SFVAGLKQLGIRCSESSAGLY-CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297
+ I +++ Y W D + + AK+ + G+
Sbjct: 293 EIPKRIPGAKITPMQAT---YLMWIDFRDTTIEG------SPSEFFIEKAKVAMNDGA 341
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 7e-19
Identities = 51/339 (15%), Positives = 99/339 (29%), Gaps = 39/339 (11%)
Query: 10 GQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR-FRT-GVELI 67
S + +VLT V ++V PG+DR +T G EL+
Sbjct: 93 WNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTV---PGYDRHFLLLQTLGFELL 149
Query: 68 PVHCRSTDNFAFSITALDQAFNQARKRGVKVRGI-LICNPANPVGNIIPRETLYELLD-F 125
V + + A+++ V+GI + +NP G I E L
Sbjct: 150 TV---DMQSDGPDVDAVERLA----GTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQ 202
Query: 126 AREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY--GLSKDLSLPGFRT 183
A + + +D+ Y E+ + SK G
Sbjct: 203 AAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF-AGAGL 261
Query: 184 GVIYSYNESVLAAAKKLTRFCSISAPT--QRLLISMLSDTK-FIQEYLETNKRRIKKLYD 240
G + S +E + K SI Q + L++ ++ + + I +
Sbjct: 262 GFVAS-SEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFR 320
Query: 241 SFVAGLKQL------GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294
+ L+ + G + D + + + A +++T
Sbjct: 321 AVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVAD-------RVVKLAEA-AGVSLT 372
Query: 295 PGSACHCIEPGW----FRCCFTSLTHEDIPLVIERIQKV 329
P A + R T E++ ++ +
Sbjct: 373 PAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAAC 411
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 53/258 (20%), Positives = 96/258 (37%), Gaps = 29/258 (11%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
L + I+LTAG++ + A L++P Y + + G+++
Sbjct: 58 NKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKI-AGMKV 116
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA 126
V + DN+AF I L A + + + NP NP G I P + + + +
Sbjct: 117 TKV--KMLDNWAFDIEGLKAAVAAYSGPSI----VYLVNPNNPTGTITPADVIEPWIA-S 169
Query: 127 REKNIHVISDEIYGGSIFGNEEFVSMAEILEA-EEVDKDRVHIIYG--LSKDLSLPGFRT 183
+ N I DE Y EFV+ + + +II SK ++ G R
Sbjct: 170 KPANTMFIVDEAYA-------EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRV 222
Query: 184 GVIYSYNESVLAAAKKLTRFC---SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
G Y+ + A + R+ I+ ++ ++D+ FI ++N + L
Sbjct: 223 G--YAVAHPTVIAL--MGRYVAGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILL- 277
Query: 241 SFVAGLKQLGIRCSESSA 258
L+ L + S
Sbjct: 278 ---KALEDLKLPYLPSEG 292
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 1e-16
Identities = 50/259 (19%), Positives = 97/259 (37%), Gaps = 31/259 (11%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
L Q I++ AG+ +E + NA L + ++ + G +
Sbjct: 72 STLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQ-CGAKC 130
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA 126
+S + L + +++ I +C P NP+G + E +
Sbjct: 131 YKT--QSITHNLDEFKKLYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGV 182
Query: 127 REKNIHVISDEIYGGSIFGNEEFVSMAEI---LEAEEVDKDRVHIIYG--LSKDLSLPGF 181
E + V+ D Y EF S + LE E+ K+ +++Y SK L G
Sbjct: 183 NE-DCLVVIDAAYN-------EFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGL 234
Query: 182 RTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239
R G Y + + +A R F ++S + ++ + D +F ++ LE N +++
Sbjct: 235 RIG--YGIANANIISAFYKLRAPF-NVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYK 291
Query: 240 DSFVAGLKQLGIRCSESSA 258
+ K+ I+ +S
Sbjct: 292 E----FAKKHNIKIIDSYT 306
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 4e-16
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 25/247 (10%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHG-NALLVPSPYYPGFDRDIRFRTGVE 65
+ Q P Q++++ GA +E+L + G +A+L P Y + GVE
Sbjct: 65 ENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAET-IGVE 123
Query: 66 LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDF 125
V + DN+ + + + VKV + +C+P NP G +I + LL+
Sbjct: 124 CRTV--PTLDNWQLDLQGISDKLDG-----VKV--VYVCSPNNPTGQLINPQDFRTLLEL 174
Query: 126 AREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK-DRVHIIYGLSKDLSLPGFRTG 184
R K I V++DE Y EF A + + + + I+ LSK +L G R G
Sbjct: 175 TRGKAI-VVADEAYI-------EFCPQASLA--GWLAEYPHLAILRTLSKAFALAGLRCG 224
Query: 185 VIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244
+ NE V+ K+ +S P + LS + + +I + +A
Sbjct: 225 FTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVA--MRERVAQIIAEREYLIA 281
Query: 245 GLKQLGI 251
LK++
Sbjct: 282 ALKEIPC 288
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 5e-16
Identities = 41/351 (11%), Positives = 104/351 (29%), Gaps = 43/351 (12%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGA------TPAVEILCFCLADHGNALLVPSPYYPGF 54
A + + Q ++ D S + + + + + + P PG+
Sbjct: 87 WADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPV---PGY 143
Query: 55 DRDIR-FRT-GVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGN 112
DR G E+I V + + A+++ + +G+ ++ +NP G
Sbjct: 144 DRHFSITERFGFEMISV---PMNEDGPDMDAVEELVKNPQVKGM----WVVPVFSNPTGF 196
Query: 113 IIPRETLYELLD-FAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY- 170
+ + L + V+ D Y +EF + +I+ E +
Sbjct: 197 TVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLT-DEFPEVIDIVGLGEAAGNPNRFWAF 255
Query: 171 -GLSKDLSLPGFRTGVIYSYNESV--LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEY 227
SK G + E+ + + Q D + ++
Sbjct: 256 TSTSKITL-AGAGVSFFLTSAENRKWYTGHAGIRGIGP-NKVNQLAHARYFGDAEGVRAV 313
Query: 228 LETNKRRIKKLYDSFVAGLKQ-----LGIRCSESSAGLYCWADMSGLIPSYSEKGELELW 282
+ + + ++ + L + + + G + D+ S +
Sbjct: 314 MRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTAS-------RVA 366
Query: 283 DKLLNIAKINVTPGSACHCIEPG----WFRCCFTSLTHEDIPLVIERIQKV 329
+ A I +T + + + R + E++ + ++ +
Sbjct: 367 ELAKE-AGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATC 416
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 9e-16
Identities = 50/261 (19%), Positives = 97/261 (37%), Gaps = 38/261 (14%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
+ + + +++ TAG +E+L L D ++ +P + + ++ G E+
Sbjct: 74 KEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALI-EGAEV 132
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA 126
+ + + + A ++ K + ICNP NP GN I + LD
Sbjct: 133 REI--PLLQDGEHDLEGMLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRV 184
Query: 127 REKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK-DRVHI------IYGLSKDLSLP 179
++ V+ DE Y E+V+ + V + I IYGL+
Sbjct: 185 PS-DVLVVLDEAYI-------EYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLA------ 230
Query: 180 GFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237
R G Y + + + R F + ++ Q+L I + D FI E +N IK+
Sbjct: 231 SARVG--YGIADKEIIRQLNIVRPPF-NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQ 287
Query: 238 LYDSFVAGLKQLGIRCSESSA 258
+ ++ ++
Sbjct: 288 YEAFA---KRFEKVKLYPANG 305
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 43/337 (12%), Positives = 98/337 (29%), Gaps = 44/337 (13%)
Query: 11 QAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR-FRT-GVELIP 68
+ FD ++ + + A+ L P P G+DR G E+I
Sbjct: 104 LNIMFD---LISWSYTWGNNDSSRPWSAEEKVKWLCPVP---GYDRHFTITEHFGFEMIN 157
Query: 69 VHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNP--ANPVGNIIPRETLYELLDFA 126
V + + + + + +G + P NP G +T EL + +
Sbjct: 158 V---PMTDEGPDMGVVRELVKDPQVKG------MWTVPVFGNPTGVTFSEQTCRELAEMS 208
Query: 127 RE-KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK-DRVHIIYG-LSKDLSLPGFRT 183
+ ++ D Y +E + I A+ +R SK G
Sbjct: 209 TAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRF-WFMSSTSKITH-AGSGV 266
Query: 184 GVIYSYNESV--LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241
S E++ A+ + + Q D ++ ++ + + ++
Sbjct: 267 SFFASSKENIEWYASHANVRGIGP-NKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFER 325
Query: 242 FVAGLKQ-----LGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296
+ L + + + G + D+ S + + A I +T
Sbjct: 326 VLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTAS-------RVVELAKE-AGIALTGA 377
Query: 297 SACHCIEPG----WFRCCFTSLTHEDIPLVIERIQKV 329
+ + R + ++ + ++
Sbjct: 378 GSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATC 414
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 48/259 (18%), Positives = 84/259 (32%), Gaps = 29/259 (11%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
A ++++ G AV + G+ ++ L G L P Y +
Sbjct: 79 AAYITKQTGVAV--TRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKG- 135
Query: 62 TGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYE 121
T E I V +F + + + + + P NP G++ + +
Sbjct: 136 THTEFIAVS--RGADFRIDMDVALEEIRAKQ-----PDIVFVTTPNNPTGDVTSLDDVER 188
Query: 122 LLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF 181
+++ A VI DE Y EF E ++ + +SK G
Sbjct: 189 IINVAPG---IVIVDEAYA-------EFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGG 238
Query: 182 RTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239
R G Y A L R + +SA +Q I L + +E ++
Sbjct: 239 RLG--YFVANPAFIDAVMLVRLPY-HLSALSQAAAIVALRHSADTLGTVEKLSVERVRV- 294
Query: 240 DSFVAGLKQLGIRCSESSA 258
A L++LG S +
Sbjct: 295 ---AARLEELGYAVVPSES 310
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 43/255 (16%), Positives = 87/255 (34%), Gaps = 38/255 (14%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPS-PYYPGFDRDIRFRTGVE 65
+ L + S ++L G + + + P Y +G+
Sbjct: 58 RKLAEHFSCPEDNLMLVRGIDECFDRISAEFSSMRFVTAWPGFDGYRARIA----VSGLR 113
Query: 66 LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDF 125
+ TD+ L Q + +++ NP+NP G + L +L
Sbjct: 114 HFEI--GLTDDLLLDPNDLAQV--------SRDDCVVLANPSNPTGQALSAGELDQLRQR 163
Query: 126 AREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK-DRVHIIYGLSKDLSLPGFRTG 184
A + ++ DE Y ++ S A + + + SK L G R G
Sbjct: 164 AGK----LLIDETYV-------DYSS----FRARGLAYGENELVFRSFSKSYGLAGLRLG 208
Query: 185 VIYSY-NESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243
+ ++AA K+ FC++ L + L + + + ++ + +++
Sbjct: 209 --ALFGPSELIAAMKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVA---- 262
Query: 244 AGLKQLGIRCSESSA 258
L+ LG R + S A
Sbjct: 263 DALRGLGYRVASSEA 277
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 9e-14
Identities = 53/257 (20%), Positives = 87/257 (33%), Gaps = 40/257 (15%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSP---YYPGFDRDIRFRTG 63
+V G+ FDPS I++ G+ + L A G + P YY G
Sbjct: 72 EVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE----VQG 127
Query: 64 VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELL 123
+ T +F + + + + P P+G P E +
Sbjct: 128 ARVRTF--GLTGDFRIAGFPERY----------EGKVFFLTTPNAPLGPSFPLE---YID 172
Query: 124 DFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRT 183
+ AR ++ DE Y F + + + V + LSK SL G R
Sbjct: 173 ELARRCAGMLVLDETYAE--FAESNALELVR-------RHENVVVTRTLSKSYSLAGMRI 223
Query: 184 GVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241
G + + AA R + ++ Q ++ L D Q YL RRI++ +
Sbjct: 224 G--LAIARPEVIAALDKIRDHY-NLDRLAQAACVAALRD----QAYLSECCRRIRETREW 276
Query: 242 FVAGLKQLGIRCSESSA 258
F L+ +G S
Sbjct: 277 FTTELRSIGYDVIPSQG 293
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 47/260 (18%), Positives = 94/260 (36%), Gaps = 35/260 (13%)
Query: 7 QVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVE 65
L + + +++L G+ + +L A G ++ P P + + +F G+E
Sbjct: 74 AKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQF-AGLE 132
Query: 66 LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDF 125
+ V R +F A+ A + + + + P NP GN+ + ++
Sbjct: 133 FVGVPLR--ADFTLDRGAMLAAMAEHQ-----PAIVYLAYPNNPTGNLFDAADMEAIVRA 185
Query: 126 AREKNIH--VISDEIYGGSIFGNEEFV--SMAEILEAEEVDKDRVHIIYGLSKDLSLPGF 181
A+ V+ DE Y F S L D + ++ +SK L L G
Sbjct: 186 AQGSVCRSLVVVDEAYQ-------PFAQESWMSRLT----DFGNLLVMRTVSK-LGLAGI 233
Query: 182 RTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239
R G + + L K+ R + +++ T+ + L + E + ++
Sbjct: 234 RLGYVAG-DPQWLEQLDKV-RPPY-NVNVLTEATALFALEHVAVLDEQAAQLRAERSRVA 290
Query: 240 DSFVAGLKQL-GIRCSESSA 258
G+ G+ S+A
Sbjct: 291 ----EGMAAHGGVTVFPSAA 306
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 3e-12
Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 44/247 (17%)
Query: 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPY--YPGFDRDIRFRTGVELIPVHCRS 73
+ + + GA EI+ + ++ P Y Y F + G + + V
Sbjct: 75 SKNNVSVGNGA---DEIIYVMMLMFDRSVFFPPTYSCYRIFAKA----VGAKFLEV--PL 125
Query: 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHV 133
T + + + + I NP NP G++ RE + +L + V
Sbjct: 126 TKDLRIPEVNVGEG-----------DVVFIPNPNNPTGHVFEREEIERIL----KTGAFV 170
Query: 134 ISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV 193
DE Y F E +V + + + +I SK SL R G Y
Sbjct: 171 ALDEAYYE--FHGESYVDFLK-------KYENLAVIRTFSKAFSLAAQRVG--YVVASEK 219
Query: 194 LAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGI 251
A R F ++S +Q L +E E + I + + + L+++G
Sbjct: 220 FIDAYNRVRLPF-NVSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREMGY 274
Query: 252 RCSESSA 258
R ++S
Sbjct: 275 RITDSRG 281
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-05
Identities = 51/324 (15%), Positives = 94/324 (29%), Gaps = 77/324 (23%)
Query: 47 PSPYYPGFD--RDIRFRTGVELIPVH-CRSTDNFAFSITALDQAFNQARK-RGVKVRGIL 102
PS + RD + + R L QA + R + V + G+L
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-----YLKLRQALLELRPAKNVLIDGVL 159
Query: 103 ICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162
G + + LD + IF ++++ E V
Sbjct: 160 GS------G----KTWV--ALDVCLSYKVQ----CKMDFKIF----WLNLKNCNSPETVL 199
Query: 163 KDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSD- 220
+ ++Y + + S + + + +L R LL+ L +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHS----IQAELRRLLKSKPYENCLLV--LLNV 253
Query: 221 -TKFIQEYLETNKR-----RIKKLYDSFVAGLKQLGIRCSESSAGLYC---------WAD 265
+ + R K++ D F++ I S L + D
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 266 MS----------------GLIPSYSEKGELELWD--KLLNIAKINVTPGSACHCIEPGWF 307
+I S + L WD K +N K+ S+ + +EP +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 308 RCCFTSLT----HEDIPL-VIERI 326
R F L+ IP ++ I
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLI 395
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 38.8 bits (89), Expect = 6e-04
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 20/49 (40%)
Query: 232 KRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELE 280
K+ +KKL ++S LY AD S P+ + K +E
Sbjct: 19 KQALKKL----------------QASLKLY--ADDSA--PALAIKATME 47
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 334 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.98 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.97 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.97 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.97 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.97 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.97 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.97 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.97 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.97 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.97 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.97 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.97 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.97 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.97 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.96 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.96 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.96 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.96 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.96 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.96 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.96 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.96 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.96 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.96 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.96 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.96 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.96 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.96 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.96 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.96 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.96 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.96 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.96 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.96 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.96 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.96 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.96 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.96 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.96 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.96 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.96 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.96 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.96 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.96 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.95 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.95 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.95 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.95 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.95 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.95 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.95 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.95 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.95 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.95 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.95 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.95 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.95 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.95 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.95 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.95 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.95 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.95 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.95 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.95 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.95 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.95 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.94 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.94 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.94 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.94 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.94 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.94 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.94 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.94 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.94 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.94 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.94 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.94 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.94 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.93 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.93 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.92 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.92 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.92 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.92 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.92 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.91 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.9 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.9 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.9 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.9 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.9 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.82 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.87 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.86 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.86 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.86 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.85 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.82 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.81 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.8 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.76 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.75 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.71 | |
| 2yvq_A | 143 | Carbamoyl-phosphate synthase; conserved hypothetic | 86.79 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 86.46 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 82.31 | |
| 3gh5_A | 525 | HEX1, beta-hexosaminidase; beta-N-acetylhexosamini | 82.18 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 82.16 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 82.1 | |
| 2gjx_A | 507 | Beta-hexosaminidase alpha chain; beta-hexosaminida | 81.6 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 80.97 | |
| 1iv0_A | 98 | Hypothetical protein; rnaseh-like, YQGF, structura | 80.15 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=348.32 Aligned_cols=332 Identities=47% Similarity=0.953 Sum_probs=285.0
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+..+.+++++|++|+|+++++..++.+++++||.|+++.|+|.++...+....|.+++.++.++++++.+|+
T Consensus 96 a~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 175 (435)
T 3piu_A 96 VDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITE 175 (435)
T ss_dssp HHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCH
T ss_pred HHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCH
Confidence 45555544444667899999999999999999999999999999999999999887763579999999987666788999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
++|++++++...++.++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.|++..+.++..+..+.+.
T Consensus 176 ~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 255 (435)
T 3piu_A 176 TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNC 255 (435)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC---
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccccc
Confidence 99999999876666689999999999999999999999999999999999999999999988887766676666542111
Q ss_pred C-----CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 162 D-----KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 162 ~-----~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
+ .++++++.|+||.+|++|+|+||++++++.+.+.++.....++.+++.+.++..++...+++++++.+++++++
T Consensus 256 d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 335 (435)
T 3piu_A 256 DENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLK 335 (435)
T ss_dssp ----CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 1 46789999999999999999999999778888888888788888999999999999887776778888999999
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
++++++.+.|++.|+++..+.+|+++|++++.........+..++...|++++||.+.||..|+...++++|++++..++
T Consensus 336 ~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 415 (435)
T 3piu_A 336 QRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPE 415 (435)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCH
T ss_pred HHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCH
Confidence 99999999999999998888889999999987544333334568888988877999999999887778999999985599
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+++++++++|++++++.
T Consensus 416 e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 416 RTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=340.70 Aligned_cols=333 Identities=44% Similarity=0.900 Sum_probs=274.8
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
|+|+.+.++...++++++|++++|+++++..++.+++++||+|+++.|+|.++...+....|.+++.+|.+.++++.+|+
T Consensus 93 a~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 172 (428)
T 1iay_A 93 AKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITS 172 (428)
T ss_dssp HHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCH
T ss_pred HHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCH
Confidence 45555544422337789999999999999999999999999999999999998875532679999999986546678999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc---
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA--- 158 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~--- 158 (334)
+++++++++....+.++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.|++..+.++..+...
T Consensus 173 ~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 252 (428)
T 1iay_A 173 KAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM 252 (428)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred HHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence 99999998755455579999999999999999999999999999999999999999999988866555555555431
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.....++++++.|+||.+|++|+|+||++++++++++.+++...+++.+++.+.++..++...++.++++.+.+++++++
T Consensus 253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 01114788999999999999999999999877889888887777778899999999999988766677788899999999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++++.+.|+++|+++..+.+|+++|++++.........+..++...|++++||.+.||..|+...++++|++++..++++
T Consensus 333 ~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~ 412 (428)
T 1iay_A 333 HKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGT 412 (428)
T ss_dssp HHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHH
T ss_pred HHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHH
Confidence 99999999998888877778999999997643211122345788887776799999998887555679999998679999
Q ss_pred HHHHHHHHHHHHHHcC
Q 019899 319 IPLVIERIQKVAETCK 334 (334)
Q Consensus 319 l~~~l~~l~~~~~~~~ 334 (334)
+++++++|++++++.|
T Consensus 413 i~~~~~~l~~~l~~~~ 428 (428)
T 1iay_A 413 VDIALARIRRFVGVEK 428 (428)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999998764
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=331.94 Aligned_cols=305 Identities=23% Similarity=0.419 Sum_probs=256.9
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ +.+++++|++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.+++++++++.+|+
T Consensus 78 a~~~~~~~g--~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~ 154 (385)
T 1b5p_A 78 AEKFRRENG--LSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-FAGGVVVEVETLPEEGFVPDP 154 (385)
T ss_dssp HHHHHHTTC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-HTTCEEEEEECCGGGTTCCCH
T ss_pred HHHHHHHhC--CCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-HcCCEEEEeecCcccCCCCCH
Confidence 456655444 56788999999999999999999999999999999999999999988 899999999986546778999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ +++++++++|+||||.++|.+++++|+++|++||++||+||+|+.+.+++ ...++..+.
T Consensus 155 ~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~----- 222 (385)
T 1b5p_A 155 ERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVA----- 222 (385)
T ss_dssp HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTC-----
T ss_pred HHHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcC-----
Confidence 999998875 78999999999999999999999999999999999999999999988865 444554442
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
.++++++.|+||.+|++|+|+||+++ ++++++.+...... ++.+.+.|.++..+++..+...+++.+.++++++++
T Consensus 223 -~~~~i~~~s~SK~~~~~G~RiG~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 300 (385)
T 1b5p_A 223 -PEHTLTVNGAAKAFAMTGWRIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRR 300 (385)
T ss_dssp -TTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEEechhhcCCcccceEEEEe-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 37899999999999999999999998 88888888765443 467888999888888651111345778889999999
Q ss_pred HHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccH
Q 019899 240 DSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDI 319 (334)
Q Consensus 240 ~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l 319 (334)
+++.+.|+++|+++..+.+++++|++++... .+..++...|+ ++||.+.||..|+. ++++|++++ .+++++
T Consensus 301 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~-~~~~~i 371 (385)
T 1b5p_A 301 DLLLEGLTALGLKAVRPSGAFYVLMDTSPIA-----PDEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYA-TSEENL 371 (385)
T ss_dssp HHHHHHHHHHTCCBCCCSBTTEEEEECTTTC-----SSHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECC-SCHHHH
T ss_pred HHHHHHHHHCCCeecCCCeeEEEEEecCCCC-----CCHHHHHHHHH-HCCeEEecccccCC--CCeEEEEec-CCHHHH
Confidence 9999999888888888889999999987421 24567888866 68999999999875 689999999 888999
Q ss_pred HHHHHHHHHHHHH
Q 019899 320 PLVIERIQKVAET 332 (334)
Q Consensus 320 ~~~l~~l~~~~~~ 332 (334)
++++++|++++++
T Consensus 372 ~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 372 RKALERFARVLGR 384 (385)
T ss_dssp HHHHHHGGGGC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=335.04 Aligned_cols=328 Identities=22% Similarity=0.379 Sum_probs=269.7
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
|++|+.++.+ +++++++|++|+|+++++..++.+++ ++||+|+++.|+|+++...++ ..|.+++.+++++++++.+
T Consensus 143 ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 219 (500)
T 3tcm_A 143 IASGIASRDG--FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIA-LHGGALVPYYLNESTGWGL 219 (500)
T ss_dssp HHHHHHHHHS--SCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHH-HTTCEEEEEECBTTTTSBC
T ss_pred HHHHHHhhcC--CCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHH-HcCCEEEEEecccccCCCC
Confidence 3566766666 67889999999999999999999998 899999999999999999999 8999999999987778899
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCC-CCcchhhhhhhc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGN-EEFVSMAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~-~~~~~~~~~~~~ 158 (334)
|+++|++++++....+.++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.|++ ..+.++..+..+
T Consensus 220 d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~ 299 (500)
T 3tcm_A 220 ETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRS 299 (500)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHH
Confidence 9999999999876666789999999999999999999999999999999999999999999999854 355666554432
Q ss_pred cc--cCCCcEEEEecccccC-CCCCceEEEEeec--CHHHHHHHHHhhc-ccCCChHHHHHHHHhhCChH-------HHH
Q 019899 159 EE--VDKDRVHIIYGLSKDL-SLPGFRTGVIYSY--NESVLAAAKKLTR-FCSISAPTQRLLISMLSDTK-------FIQ 225 (334)
Q Consensus 159 ~~--~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-------~~~ 225 (334)
.+ .+..++++++|+||.+ |++|+|+||+++. ++++++.+..... .++.+.+.|.++..++...+ ...
T Consensus 300 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 379 (500)
T 3tcm_A 300 LGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYK 379 (500)
T ss_dssp TTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHH
T ss_pred hccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHH
Confidence 11 1235678999999999 8999999999873 6778888876554 46778899999988887421 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCC------CCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIP------SYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
++..+++++++++++++.+.|+++ |+++..+.+++++|+++..+.. .....+...++..+++++||.+.||+.
T Consensus 380 ~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~ 459 (500)
T 3tcm_A 380 AEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSG 459 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcc
Confidence 556788889999999999999998 8999999999999966542110 000012234566778889999999999
Q ss_pred cCC-CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 299 CHC-IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 ~~~-~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
|+. ...+++|++++ .+++++++++++|++++++
T Consensus 460 f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 460 FGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFHEA 493 (500)
T ss_dssp TCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHH
Confidence 985 44678999999 8999999999999998875
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=323.34 Aligned_cols=312 Identities=21% Similarity=0.366 Sum_probs=262.3
Q ss_pred hhhhhhhhcCCCCCCCCc-EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDPSQ-IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++|+.+..+ +.+++++ |++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.+|+++++++.+|
T Consensus 73 a~~~~~~~g--~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d 149 (389)
T 1gd9_A 73 AEKLKKQNG--IEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-LAGGKPVEVPTYEEDEFRLN 149 (389)
T ss_dssp HHHHHHHHC--CCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-HHTCEEEEEECCGGGTTCCC
T ss_pred HHHHHHHhC--CCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-HCCCEEEEeccCCccCCCCC
Confidence 455555445 5567889 9999999999999999999999999999999999999888 88999999998644567899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++....++..+..
T Consensus 150 ~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--- 220 (389)
T 1gd9_A 150 VDELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG--- 220 (389)
T ss_dssp HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT---
T ss_pred HHHHHHhcCc------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC---
Confidence 9999999875 7899999999999999999999999999999999999999999998886653444544421
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..++++++.|+||.+|++|+|+||+++ ++++++.+..... .++.+++.+.++..+++..+. ..++.+++++++++
T Consensus 221 -~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~ 297 (389)
T 1gd9_A 221 -MFERTITVNGFSKTFAMTGWRLGFVAA-PSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRR 297 (389)
T ss_dssp -CGGGEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHH
T ss_pred -CCCCEEEEecChhhcCCcccceEEEEE-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 146789999999999989999999998 7888888876544 357788999999999887431 23678888999999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++++.+.|++.|+++..+.+|+++|++++... .+..++...|++++||.+.||..|+...++++|++++ .++++
T Consensus 298 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~-~~~~~ 371 (389)
T 1gd9_A 298 RKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTG-----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA-TAYEK 371 (389)
T ss_dssp HHHHHHHHHHTTCCCCCCCBTTEECCBCGGGT-----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC-SCHHH
T ss_pred HHHHHHHHHHcCCeecCCCeeeEEEEeccCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHH
Confidence 99999999998988888888999999987411 1346788887757999999999887555789999999 58999
Q ss_pred HHHHHHHHHHHHHHcC
Q 019899 319 IPLVIERIQKVAETCK 334 (334)
Q Consensus 319 l~~~l~~l~~~~~~~~ 334 (334)
+++++++|++++++.+
T Consensus 372 i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 372 LEEAMDRMERVLKERK 387 (389)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998753
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=326.98 Aligned_cols=309 Identities=17% Similarity=0.319 Sum_probs=258.7
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ .. ++++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+|.++ ..+|+
T Consensus 128 a~~~~~~~g--~~-~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~---~g~d~ 200 (448)
T 3aow_A 128 MKWLGKRYG--IS-QDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFN-FYEPQYIQIPLDD---EGMKV 200 (448)
T ss_dssp HHHHHHHHC--CC-TTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-TTCCEEEEEEEET---TEECH
T ss_pred HHHHHHhcC--cC-ChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-HcCCEEEEeccCC---CCCCH
Confidence 445544444 44 78899999999999999999999999999999999999999998 8999999999743 24899
Q ss_pred HHHHHHHHHHHHcCCceeEE-EEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGI-LICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i-~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++|+++++.....+.++++| ++++|+||||.++|.+++++|+++|++||++||+||+|+.+.+++....++..+..
T Consensus 201 ~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~--- 277 (448)
T 3aow_A 201 EILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDN--- 277 (448)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCT---
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCC---
Confidence 99999997321122378887 46889999999999999999999999999999999999999987765566666543
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++++++.||||.++ +|+|+||+++ ++++++.+..... .++.+++.|.++..+++... ..+++.++++.++++
T Consensus 278 --~~~vi~~~S~SK~~~-~GlriG~v~~-~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~-~~~~~~~~~~~~~~~ 352 (448)
T 3aow_A 278 --EGRVIYLGTFSKILA-PGFRIGWMVG-DPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGY-LEKHIPEIRKFYKPR 352 (448)
T ss_dssp --TSCEEEEEESTTTTC-GGGCCEEEEE-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHH
T ss_pred --CCCEEEEccchhhcc-ccccEEEEEe-CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Confidence 578999999999999 9999999999 7899888876543 35678999999999987653 366778889999999
Q ss_pred HHHHHHHHHhC---CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEEEEecC
Q 019899 239 YDSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFRCCFTS 313 (334)
Q Consensus 239 ~~~~~~~l~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iRi~~~~ 313 (334)
++++.+.|++. ++++..|.+|+++|++++... +..++...|++ +||.+.||..|+.. .++++|++++.
T Consensus 353 ~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~------~~~~l~~~l~~-~gV~v~pg~~f~~~~~~~~~iRls~~~ 425 (448)
T 3aow_A 353 RDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGI------DSKKMLERAIK-KGVAYVPGEAFYAHRDVKNTMRLNFTY 425 (448)
T ss_dssp HHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTC------CHHHHHHHHHH-TTEECEEGGGGSTTCCCCSEEEEECSS
T ss_pred HHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCC------CHHHHHHHHHH-CCcEEEcchhhcCCCCCCCEEEEEeCC
Confidence 99999999875 788888889999999998532 34678888666 59999999988653 35799999985
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 019899 314 LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++++++++++|.+++++
T Consensus 426 ~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 426 VDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp SCTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999875
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=326.98 Aligned_cols=307 Identities=20% Similarity=0.327 Sum_probs=258.9
Q ss_pred hhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++|+.+..+ ..+++ ++|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.+++++ +++.+|
T Consensus 95 a~~~~~~~g--~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~-~~~~~d 170 (404)
T 2o1b_A 95 VDFYQRQYN--VTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVL-LADGKPVPLNLEP-PHYLPD 170 (404)
T ss_dssp HHHHHHHHC--CCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHH-HTTCEEEEEECCT-TTCCCC
T ss_pred HHHHHHHhC--CCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-HCCCEEEEeccCc-ccCcCC
Confidence 455555445 55565 799999999999999999999999999999999999999988 8999999999864 567789
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++|++++++ ++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++ ...++..+...
T Consensus 171 ~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~-- 241 (404)
T 2o1b_A 171 WSKVDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENG-- 241 (404)
T ss_dssp GGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTH--
T ss_pred HHHHHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCC--
Confidence 9999999975 78999999999999999999999999999999999999999999988765 33344443210
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++++++.|+||.+|++|+|+||+++ ++++++.+..... .++.+++.+.++..+++.. ++++.+.+++++++
T Consensus 242 --~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~ 315 (404)
T 2o1b_A 242 --KDVAIEIYSLSKGYNMSGFRVGFAVG-NKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTR 315 (404)
T ss_dssp --HHHEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHH
T ss_pred --CCCEEEEEecchhccCchhheEeEec-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHH
Confidence 36789999999999989999999998 8899888876544 3578889999888887542 45667888899999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++++.+.|++.|+++..+.+|+++|++++... +..++...|++++||.+.||..|+...++++|++++ .++++
T Consensus 316 ~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~e~ 388 (404)
T 2o1b_A 316 RDRFEAMLAKADLPFVHAKGGIYVWLETPPGY------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLA-LDDQK 388 (404)
T ss_dssp HHHHHHHHHHTTCCEECCCBSSEEEEECCTTC------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECC-SCTTH
T ss_pred HHHHHHHHHhcCCeecCCCcceEEEEeCCCCC------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEc-CCHHH
Confidence 99999999988888888888999999997432 346788887777899999999887545689999999 58899
Q ss_pred HHHHHHHHHHHHHHcC
Q 019899 319 IPLVIERIQKVAETCK 334 (334)
Q Consensus 319 l~~~l~~l~~~~~~~~ 334 (334)
+++++++|++++++++
T Consensus 389 l~~~l~~l~~~l~~~~ 404 (404)
T 2o1b_A 389 LDEAAIRLTELAYLYE 404 (404)
T ss_dssp HHHHHHHHHGGGGGGC
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999988763
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=326.35 Aligned_cols=311 Identities=22% Similarity=0.350 Sum_probs=259.2
Q ss_pred hhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++|+.+..+ ..+++ ++|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.+++++++++.+|
T Consensus 85 a~~~~~~~g--~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d 161 (412)
T 2x5d_A 85 SHWYRDRYD--VQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAV-IAGAQVRSVPLVPGIDFFNE 161 (412)
T ss_dssp HHHHHHHHC--CCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-HHTCEEEEEECSTTSCHHHH
T ss_pred HHHHHHHhC--CCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-HcCCEEEEeecCCccCCCCC
Confidence 455555445 55677 799999999999999999999999999999999999999988 88999999998654466688
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++..+.++..+...
T Consensus 162 ~~~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-- 233 (412)
T 2x5d_A 162 LERAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGA-- 233 (412)
T ss_dssp HHHHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTG--
T ss_pred HHHHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCc--
Confidence 9999988864 78999999999999999999999999999999999999999999998866555555544210
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++++++.|+||.+|++|+|+||+++ ++++++.+..... .++.+++.+.++..+++.. ++++.+.+++++++
T Consensus 234 --~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~ 307 (412)
T 2x5d_A 234 --KDIAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIARQYQQR 307 (412)
T ss_dssp --GGTEEEEEECC-CCSCTTSCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHH
T ss_pred --cCcEEEEecCccccCCcccceEEEEc-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 46789999999999989999999998 8899888876544 4678899999988888653 24567788889999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++++.+.|++.|+++..+.+|+++|++++.... ..+..++...|++++||.+.||..|+...++++|++++ .++++
T Consensus 308 ~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~ 383 (412)
T 2x5d_A 308 RDVLVKGLREAGWMVENPKASMYVWAKIPEPYA---HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALI-ENRDR 383 (412)
T ss_dssp HHHHHHHHHHHTCCCCCCSBSSEEEEECCTTTG---GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC-SCHHH
T ss_pred HHHHHHHHHHCCCEecCCCeeeEEEEEcCCccC---CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEec-CCHHH
Confidence 999999999888888888889999999975321 01346788887777899999999887555789999999 48899
Q ss_pred HHHHHHHHHHHHHHc
Q 019899 319 IPLVIERIQKVAETC 333 (334)
Q Consensus 319 l~~~l~~l~~~~~~~ 333 (334)
+++++++|++++++.
T Consensus 384 l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 384 LRQAVRGIKAMFRAD 398 (412)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=323.02 Aligned_cols=313 Identities=16% Similarity=0.234 Sum_probs=255.1
Q ss_pred hhhhhhhhcCCCCCC-------CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCC
Q 019899 2 AGFMSQVLGQAVSFD-------PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~-------~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~ 74 (334)
++|+.+..+ ...+ +++|++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.+++++
T Consensus 88 a~~l~~~~g--~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~- 163 (425)
T 2r2n_A 88 KQLQIKLHN--PPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLH-PLGCNIINVASDE- 163 (425)
T ss_dssp HHHHHHHHC--CTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHG-GGTCEEEEECEET-
T ss_pred HHHHHHhcC--CCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-HcCCEEEEeCcCC-
Confidence 566666555 4442 3699999999999999999999999999999999999999998 8999999999742
Q ss_pred CCccccHHHHHHHHHHHH------HcCCceeEEEE-eCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC
Q 019899 75 DNFAFSITALDQAFNQAR------KRGVKVRGILI-CNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE 147 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~------~~~~~~~~i~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~ 147 (334)
..+|+++|++++++.. ....++++|++ .+|+||||.++|.+++++|+++|++||++||+||+|+++.|++.
T Consensus 164 --~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~ 241 (425)
T 2r2n_A 164 --SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKF 241 (425)
T ss_dssp --TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSS
T ss_pred --CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCC
Confidence 3589999999986310 00125787766 58899999999999999999999999999999999999988776
Q ss_pred CcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCCh--HH
Q 019899 148 EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDT--KF 223 (334)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~--~~ 223 (334)
...++..+.. .++++++.|+||+++ +|+|+||+++ ++++++.+..... .++.+++.|.++..+++.. +.
T Consensus 242 ~~~~~~~~~~-----~~~~i~~~s~SK~~~-~GlRiG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~ 314 (425)
T 2r2n_A 242 RVPTFLSMDV-----DGRVIRADSFSKIIS-SGLRIGFLTG-PKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEG 314 (425)
T ss_dssp CCCCTGGGCT-----TSCEEEEEESTTTTC-STTCCEEEEE-EHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccCC-----CCCEEEEccchhhcc-CccceEEEec-CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccch
Confidence 6666666543 578999999999998 9999999998 7788888876543 4678999999999888752 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CC-cccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQL--GI-RCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~--g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
..+++.+++++++++++.+.+.|++. ++ .+..+.+|+++|++++...+ ..+++...+.++||.+.||..|+
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~------~~~~~~~~l~~~gv~v~pg~~f~ 388 (425)
T 2r2n_A 315 FMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIND------VKELIEEKAVKMGVLMLPGNAFY 388 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSC------CHHHHHTHHHHTTEECEEGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCC------HHHHHHHHHHHCCcEEechhhhc
Confidence 35677888999999999999999885 66 45678899999999986432 24543334667999999999887
Q ss_pred CC---CCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 301 CI---EPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 301 ~~---~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.. ..+++|++++..+++++++++++|++++++.
T Consensus 389 ~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 389 VDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp SSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 54 2579999998669999999999999998763
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=324.84 Aligned_cols=328 Identities=20% Similarity=0.306 Sum_probs=263.7
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCC----eEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGN----ALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
++|+.++.+ ++.+++++|++|+|+++++..++.+++++|| .|+++.|+|+.+...++ ..|.+++.++++++++|
T Consensus 139 a~~~~~~~g-G~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~-~~g~~~v~~~~~~~~~~ 216 (498)
T 3ihj_A 139 AAYITRRDG-GVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVIS-ELDAIQVNYYLDEENCW 216 (498)
T ss_dssp HHHHHHHTT-TCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHH-HTTCEEEEEECBGGGTT
T ss_pred HHHHHHhcC-CCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHH-HcCCEEEEeeccccccC
Confidence 556655441 2667899999999999999999999998875 99999999999999998 89999999999877788
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC-Ccchhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~-~~~~~~~~~ 156 (334)
.+|+++|++++++.... .++++|++++|+||||.++|.+++++|+++|++|+++||+||+|+.+.|++. .+.++..+.
T Consensus 217 ~~d~~~le~~l~~~~~~-~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~ 295 (498)
T 3ihj_A 217 ALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVL 295 (498)
T ss_dssp BCCHHHHHHHHHHHTTT-SEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHH
T ss_pred CCCHHHHHHHHHhhhcc-CCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHH
Confidence 99999999999874221 2589999999999999999999999999999999999999999999998754 566666654
Q ss_pred hccc--c-CCCcEEEEecccccC-CCCCceEEEEee--cCHHHHHHHHHhhcc-cCCChHHHHHHHHhhCC-----h--H
Q 019899 157 EAEE--V-DKDRVHIIYGLSKDL-SLPGFRTGVIYS--YNESVLAAAKKLTRF-CSISAPTQRLLISMLSD-----T--K 222 (334)
Q Consensus 157 ~~~~--~-~~~~~~~~~s~sK~~-~~~g~r~g~i~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~-----~--~ 222 (334)
.+.. + +..++++++|+||.+ |++|+|+||++. .++++++.+...... .+.+.+.|.++..++.. . +
T Consensus 296 ~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~ 375 (498)
T 3ihj_A 296 YEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFE 375 (498)
T ss_dssp HHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHH
T ss_pred HHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHH
Confidence 3100 0 134578999999999 889999999983 488999988766443 56788999998888864 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCC-----CChhhHHHH-HHHHHHhcCeEEcC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPS-----YSEKGELEL-WDKLLNIAKINVTP 295 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~-~~~ll~~~gi~v~~ 295 (334)
...+...+++++++++++.+.+.|+++ |+++..+.+++++|++++.+... ....+..++ +..+++++||.+.|
T Consensus 376 ~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~p 455 (498)
T 3ihj_A 376 QFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVP 455 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEe
Confidence 112334677889999999999999998 89999999999999876422100 000122333 67778889999999
Q ss_pred CCCcCC-CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 296 GSACHC-IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 296 g~~~~~-~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
|+.|+. ..++++|++++ .+++++++++++|+++++++
T Consensus 456 G~~f~~~~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 456 GSGFGQREGTYHFRMTIL-PPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp GGGTCCCTTCCBEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHH
Confidence 999985 34679999997 88999999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=321.55 Aligned_cols=313 Identities=17% Similarity=0.253 Sum_probs=266.0
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC-CCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR-STDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~~~ 80 (334)
++++.+.++ +++++++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+|++ .++.+.+|
T Consensus 72 a~~l~~~~g--~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~d 148 (391)
T 3dzz_A 72 ADWEEIEHR--ARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIE-GNGRRVISSDLIYENSKYSVN 148 (391)
T ss_dssp HHHHHHHHS--CCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHH-HTTCEEEECCCEEETTEEECC
T ss_pred HHHHHHHhC--CCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHH-HcCCEEEEeeeeecCCceeec
Confidence 566666666 56788999999999999999999999999999999999999999998 899999999984 34556699
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ .++++|++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+.+..+.++..+...
T Consensus 149 ~~~l~~~l~~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-- 221 (391)
T 3dzz_A 149 WADLEEKLAT-----PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWD-- 221 (391)
T ss_dssp HHHHHHHHTS-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTT--
T ss_pred HHHHHHHHhc-----cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCcc--
Confidence 9999999973 289999999999999999999999999999999999999999999998877666666655421
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh---cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT---RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..++++++.|+||.+|++|+|+||++++++++.+.++... ..++.+++.+.++..++... .+++.+.++++++
T Consensus 222 -~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~ 297 (391)
T 3dzz_A 222 -AKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG---HDWLRELKQVLRD 297 (391)
T ss_dssp -TGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC---HHHHHHHHHHHHH
T ss_pred -ccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHH
Confidence 0457899999999999999999999995699988887653 34578888888888777542 4556788889999
Q ss_pred HHHHHHHHHHhC--CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 238 LYDSFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 238 ~~~~~~~~l~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++++.+.|++. ++++..+.+++++|++++... .+..++...|++++||.+.||..|+...++++|++++ .+
T Consensus 298 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~ 371 (391)
T 3dzz_A 298 NFAYAREFLAKEVPEVKVLDSNASYLAWVDISALG-----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CP 371 (391)
T ss_dssp HHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGC-----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC-SC
T ss_pred HHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec-CC
Confidence 999999999984 899888999999999987531 1346888887667999999999988766789999999 78
Q ss_pred cccHHHHHHHHHHHHHHcC
Q 019899 316 HEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~~~~ 334 (334)
++++++++++|++++++++
T Consensus 372 ~~~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 372 KELVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998754
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=320.02 Aligned_cols=304 Identities=20% Similarity=0.257 Sum_probs=261.9
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++++.+..+ +.+++++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+|+++ + +|+
T Consensus 68 a~~~~~~~~--~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~--~--~d~ 140 (377)
T 3fdb_A 68 AEFYADRYG--YQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLS-ATQREGIFIDATG--G--INL 140 (377)
T ss_dssp HHHHHHHHC--CCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHH-HHTCCEEEEECTT--S--CCH
T ss_pred HHHHHHHhC--CCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-HcCCEEEEccCCC--C--CCH
Confidence 566666666 56788999999999999999999999999999999999999999988 8999999999843 2 999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCC-CCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGN-EEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (334)
+++++++++ +++++++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++ ....++..+..
T Consensus 141 ~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~--- 211 (377)
T 3fdb_A 141 HDVEKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA--- 211 (377)
T ss_dssp HHHHHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH---
T ss_pred HHHHHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC---
Confidence 999999986 68899999999999999999999999999999999999999999998877 55556655543
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++++++.|+||.+|++|+|+||+++.++++.+.+..... .++.+++.+.++..++... ++++.+++++++++
T Consensus 212 --~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~ 286 (377)
T 3fdb_A 212 --ASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG---TDFLNQEVAYLKNN 286 (377)
T ss_dssp --HHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHH
T ss_pred --CCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHH
Confidence 5778999999999998999999988768899888877543 3578889998888887643 45567888899999
Q ss_pred HHHHHHHHHhC--CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 239 YDSFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
++++.+.|++. ++++..+.+++++|++++..... .++...+++++||.+.||..|+...++++|++++ .++
T Consensus 287 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~-~~~ 359 (377)
T 3fdb_A 287 HDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTIE------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA-TSR 359 (377)
T ss_dssp HHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCCC------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC-SCH
T ss_pred HHHHHHHHHhhCCCceEecCCeeEEEEEECcccCCC------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC-CCH
Confidence 99999999985 89998999999999999864211 3677887887899999999988766789999999 689
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+++++++++|+++++++
T Consensus 360 e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 360 EVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=328.68 Aligned_cols=311 Identities=18% Similarity=0.328 Sum_probs=257.2
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCC------
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD------ 75 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~------ 75 (334)
++++.+.++ .++++++|++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.+++.+++
T Consensus 105 a~~l~~~~g--~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~ 181 (447)
T 3b46_A 105 IKLYSPIYN--TELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIE-LCGGKVVYVPINPPKELDQRN 181 (447)
T ss_dssp HHHHTTTTT--SCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEEEECCGGGGTSC
T ss_pred HHHHHHhcC--CCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHH-HcCCEEEEEeCCCcccccccc
Confidence 455554444 45677899999999999999999999999999999999999999988 899999999975432
Q ss_pred ----CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 76 ----NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 76 ----~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
++.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|++||++||+||+|+.+.+++ ...+
T Consensus 182 ~~~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~ 254 (447)
T 3b46_A 182 TRGEEWTIDFEQFEKAITS------KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTR 254 (447)
T ss_dssp BCSTTSEECHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCC
T ss_pred ccccCcccCHHHHHHhhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcC
Confidence 578999999998874 78999999999999999999999999999999999999999999998876 3334
Q ss_pred hhhh-hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 152 MAEI-LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 152 ~~~~-~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
+..+ ... .++++++.|+||.++++|+|+||+++.++++++.+.... ..++.+++.|.++..+++... .++++
T Consensus 255 ~~~~~~~~----~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~-~~~~~ 329 (447)
T 3b46_A 255 IATLSPEI----GQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDAL-KIGYF 329 (447)
T ss_dssp GGGSCHHH----HTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH-HHTHH
T ss_pred HHHcCCCC----CCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCc-chHHH
Confidence 4443 111 578999999999999999999999985778888887643 456788999998888886532 24567
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCC---------ChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSY---------SEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
.+++++++++++++.+.|+++|+++..+.+|+++|++++...... ...+..+++.+|++++||.+.||..|
T Consensus 330 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f 409 (447)
T 3b46_A 330 EKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEF 409 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHh
Confidence 888999999999999999998998888889999999997531000 01245678888887899999999888
Q ss_pred CCC-----CCCeEEEEecCCCcccHHHHHHHHHH
Q 019899 300 HCI-----EPGWFRCCFTSLTHEDIPLVIERIQK 328 (334)
Q Consensus 300 ~~~-----~~~~iRi~~~~~~~~~l~~~l~~l~~ 328 (334)
+.. .++++|++++ .+++++++++++|++
T Consensus 410 ~~~~~~~~~~~~iRls~~-~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 410 YIKEHEKAAENLLRFAVC-KDDAYLENAVERLKL 442 (447)
T ss_dssp SCGGGGGGGTTEEEEECC-SCHHHHHHHHHHGGG
T ss_pred CCCCccCCCCCEEEEEEe-CCHHHHHHHHHHHHH
Confidence 643 2579999999 689999999999987
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=325.35 Aligned_cols=304 Identities=21% Similarity=0.375 Sum_probs=259.8
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
..+++++|++|+|+++|+..++..++++||+|++++|+|.++...++ ..|.+++.+++.+++++.+|++++++++++
T Consensus 114 ~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~-- 190 (427)
T 3dyd_A 114 APLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAE-SMGIEVKLYNLLPEKSWEIDLKQLEYLIDE-- 190 (427)
T ss_dssp BCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-HTTCEEEEEEEEGGGTTEECHHHHHSSCCT--
T ss_pred CCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-HcCCEEEEEecccccCCCCCHHHHHHHhcc--
Confidence 44778999999999999999999999999999999999999999998 899999999986667788999999998875
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
+++++++++|+||||.++|.+++++|+++|+++|+++|+|++|+.+.+++..+.++..+.. ...++++.|+
T Consensus 191 ----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~-----~~~vi~~~S~ 261 (427)
T 3dyd_A 191 ----KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLST-----DVPILSCGGL 261 (427)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCS-----SCCEEEEEES
T ss_pred ----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCC-----CCcEEEEeec
Confidence 7899999999999999999999999999999999999999999999988776666666654 5668899999
Q ss_pred cccCCCCCceEEEEeecC------HHHHHHHHHhh-cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 173 SKDLSLPGFRTGVIYSYN------ESVLAAAKKLT-RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (334)
||.++++|+|+||+++++ +++.+.+.... ..++.+++.+.++..++.... .+++.+++++++++++++.+.
T Consensus 262 sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~--~~~~~~~~~~~~~~~~~l~~~ 339 (427)
T 3dyd_A 262 AKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYGA 339 (427)
T ss_dssp TTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHH
Confidence 999988999999999855 56777776553 357889999999999887322 345677888899999999999
Q ss_pred HHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 246 LKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 246 l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
|+++ |+++..+.+++++|++++..... ...+..+++..|++++||.+.||..|+. ++++|++++ .++++++++++
T Consensus 340 L~~~~g~~~~~p~~g~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l~ 415 (427)
T 3dyd_A 340 LAAIPGLRPVRPSGAMYLMVGIEMEHFP-EFENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEACS 415 (427)
T ss_dssp HHHSTTEEEECCSBTTEEEEEECGGGCT-TCSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESC-SCHHHHHHHHH
T ss_pred HhcCCCceecCCCeeEEEEEecCHhhcC-CCCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEEC-CCHHHHHHHHH
Confidence 9998 88888888999999988732110 0123468888988789999999998864 689999998 89999999999
Q ss_pred HHHHHHHHcC
Q 019899 325 RIQKVAETCK 334 (334)
Q Consensus 325 ~l~~~~~~~~ 334 (334)
+|.+++++++
T Consensus 416 ~l~~~l~~~~ 425 (427)
T 3dyd_A 416 RIQEFCEQHY 425 (427)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=319.75 Aligned_cols=311 Identities=23% Similarity=0.350 Sum_probs=261.7
Q ss_pred hhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC----CCC
Q 019899 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS----TDN 76 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~----~~~ 76 (334)
++++.+.++ ..+++ ++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.++..+ +++
T Consensus 88 ~~~l~~~~g--~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 164 (407)
T 3nra_A 88 APRLAAFTG--APVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVE-FFEGEMVPVQLDYVSADETR 164 (407)
T ss_dssp HHHHHHHHT--SCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHH-HTTCEEEEEEBCCCSSCCSS
T ss_pred HHHHHHHhC--CCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHH-HcCCEEEEeecccccccCcC
Confidence 456666555 45555 799999999999999999999999999999999999999998 8999999999742 366
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
+.+|++++++++++ +++++++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++....++..+.
T Consensus 165 ~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~ 238 (407)
T 3nra_A 165 AGLDLTGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEA 238 (407)
T ss_dssp CCBCHHHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCT
T ss_pred CCcCHHHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcC
Confidence 78999999999986 789999999999999999999999999999999999999999999998876666666553
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
. ...++++++.|+||.+|++|+|+||+++ ++++++.++..... ++.+++.+.++..++... .+++.+.+++
T Consensus 239 ~---~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~ 311 (407)
T 3nra_A 239 A---VDAENVVTIMGPSKTESLSGYRLGVAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIAR 311 (407)
T ss_dssp T---SCGGGEEEEECSSSTTCCGGGCCEEEEE-CHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCC---TTHHHHHHHH
T ss_pred c---ccCCcEEEEeCcccccCCCeeeEEEEEc-CHHHHHHHHHHHhhhccCCChHHHHHHHHHHhcc---chHHHHHHHH
Confidence 0 1267889999999999999999999998 88998888765443 456778888877777643 2334566777
Q ss_pred HHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 235 IKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
++++++++.+.|+++ ++++..+.+++++|++++... .+..++...|++++||.+.||..|++..++++|++++
T Consensus 312 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~- 385 (407)
T 3nra_A 312 HQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA-----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS- 385 (407)
T ss_dssp HHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS-----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC-
T ss_pred HHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC-
Confidence 888999999999988 888888888899999987631 1346788887777899999999998767899999999
Q ss_pred CCcccHHHHHHHHHHHHHHcC
Q 019899 314 LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~~~ 334 (334)
.+++++++++++|++++++++
T Consensus 386 ~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 386 QDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp SCHHHHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 599999999999999998753
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=316.99 Aligned_cols=305 Identities=19% Similarity=0.323 Sum_probs=254.3
Q ss_pred hhhhhhhhcCCCC-CCCC-cEEEecCcHHHHHHHHHHhcCCC-----CeEEecCCCCCChhhhhhhccCcEEEEEeCCCC
Q 019899 2 AGFMSQVLGQAVS-FDPS-QIVLTAGATPAVEILCFCLADHG-----NALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74 (334)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~-~i~~~~g~~~~~~~~~~~l~~~g-----d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~ 74 (334)
++|+.+.++ +. ++++ +|++|+|+++++..++.+++++| |+|+++.|+|.++...++ ..|.+++.+++ ++
T Consensus 76 a~~l~~~~g--~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~-~~g~~~~~v~~-~~ 151 (396)
T 3jtx_A 76 ANWLKRRYD--GLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATL-LGGGEIHFANC-PA 151 (396)
T ss_dssp HHHHHHHTT--TCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHH-HTTCEEEEEEC-CT
T ss_pred HHHHHHhcC--CCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHH-HcCCEEEEeec-CC
Confidence 456665545 44 6788 99999999999999999999886 799999999999999888 89999999998 45
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
+++.+|++++++++++ +++++++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++..+.+...
T Consensus 152 ~g~~~d~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 225 (396)
T 3jtx_A 152 PSFNPDWRSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQ 225 (396)
T ss_dssp TTCCCCGGGSCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHH
T ss_pred CCCccCHHHHHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHh
Confidence 6778899999999987 8999999999999999999999999999999999999999999999887643333332
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.......+.++++++.|+||.++++|+|+||+++ ++++++.+..... .++.+++.+.++..++... +++.+.+
T Consensus 226 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~ 300 (396)
T 3jtx_A 226 AAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAG-DAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDE----QHVIDNR 300 (396)
T ss_dssp HHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEE-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCC----HHHHHHH
T ss_pred hhhhcccccCcEEEEeccccccCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCH----HHHHHHH
Confidence 2110011268899999999999889999999998 8899888876544 3578899999988888753 3457778
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC------CCCCe
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC------IEPGW 306 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~------~~~~~ 306 (334)
++++++++.+.+.|++. +.+..+.+|+++|++++.. +..++...|++++||.+.||..|+. ..+++
T Consensus 301 ~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~ 372 (396)
T 3jtx_A 301 RLYQEKFERVIPILQQV-FDVKLPDASFYIWLKVPDG-------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGY 372 (396)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCCCSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTE
T ss_pred HHHHHHHHHHHHHHHhc-CCccCCCeeEEEEEECCCC-------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCe
Confidence 88999999999999876 5666788899999999862 3468888887888999999998875 24689
Q ss_pred EEEEecCCCcccHHHHHHHHHHHH
Q 019899 307 FRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 307 iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
+|++++ .+++++++++++|++++
T Consensus 373 iRis~~-~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 373 VRIALV-ADVATCVKAAEDIVSLY 395 (396)
T ss_dssp EEEECC-SCHHHHHHHHHHHHHHC
T ss_pred EEEEEc-CCHHHHHHHHHHHHHHh
Confidence 999998 49999999999999875
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=323.80 Aligned_cols=315 Identities=19% Similarity=0.327 Sum_probs=259.9
Q ss_pred hhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCC-----
Q 019899 2 AGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD----- 75 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~----- 75 (334)
++|+.+.++ .+++++ +|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.+|+++++
T Consensus 87 a~~l~~~~g--~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 163 (429)
T 1yiz_A 87 SKLYSQLVD--RTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVK-AAGGIPRFIPLKPNKTGGTI 163 (429)
T ss_dssp HHHHHHHHT--SCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECBCCCSSSSE
T ss_pred HHHHHHHhC--CCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-HcCCEEEEEeCCcccccccc
Confidence 455555555 557788 99999999999999999999999999999999999999988 899999999986432
Q ss_pred ---CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 76 ---NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 76 ---~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
++.+|++++++++++ ++++|++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++....++
T Consensus 164 ~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 237 (429)
T 1yiz_A 164 SSADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRI 237 (429)
T ss_dssp EGGGCBCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCG
T ss_pred cccCcccCHHHHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcCh
Confidence 567999999998864 78999999999999999999999999999999999999999999998876555555
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCC-----hHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSD-----TKFIQ 225 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~-----~~~~~ 225 (334)
..+.. ..++++++.|+||.+|++|+|+||+++ ++++++.+.... ..++.+++.+.++..+++. .. .+
T Consensus 238 ~~~~~----~~~~~~~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~-~~ 311 (429)
T 1yiz_A 238 CTLPG----MWERTITIGSAGKTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKS-PE 311 (429)
T ss_dssp GGSTT----TGGGEEEEEEHHHHHTCGGGCCEEEES-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS-TT
T ss_pred hhccC----CcCceEEEecchhccCCCCcceEEEEe-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccc-hH
Confidence 54421 157899999999999989999999998 788888887653 3567888999888888765 21 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCC------CCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP------SYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
+++.+.+++++++++++.+.|++.|+++..+.+|+++|++++.... .....+..++...|++++||.+.||..|
T Consensus 312 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f 391 (429)
T 1yiz_A 312 CYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAF 391 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHh
Confidence 4567788899999999999999888888888889999999976310 0001245678888777799999999877
Q ss_pred CCC-----CCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 300 HCI-----EPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~~~-----~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
+.. .++++|++++ .+++++++++++|++++++
T Consensus 392 ~~~~~~~~~~~~iRis~~-~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 392 YSEPNKHLGEDFVRYCFF-KKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp SCGGGGGGTTTEEEEECC-SCHHHHHHHHHHHHHHSCC
T ss_pred CCCcccCCCCCeEEEEec-CCHHHHHHHHHHHHHhccC
Confidence 642 2579999999 6899999999999998754
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=318.61 Aligned_cols=304 Identities=19% Similarity=0.285 Sum_probs=255.0
Q ss_pred hhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++|+.+.++ .+++++ +|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.++++++ ++.+|
T Consensus 77 a~~l~~~~g--~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~v~~~~~-~~~~d 152 (386)
T 1u08_A 77 AQKTERLYG--YQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIA-LSGGIVKRMALQPP-HFRVD 152 (386)
T ss_dssp HHHHHHHHS--CCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECCTT-TCCCC
T ss_pred HHHHHHHhC--CCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-HcCCEEEEeecCcc-cCcCC
Confidence 456665555 567888 99999999999999999999999999999999999999888 89999999998532 57899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++....++..+...
T Consensus 153 ~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-- 224 (386)
T 1u08_A 153 WQEFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQL-- 224 (386)
T ss_dssp HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHH--
T ss_pred HHHHHHhhcc------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCc--
Confidence 9999999864 78999999999999999999999999999999999999999999998876555555544311
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++++++.|+||.+|++|+|+||+++ ++++.+.++.... .++.+++.+.++..+++.. ++++.+.+++++++
T Consensus 225 --~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~ 298 (386)
T 1u08_A 225 --RERAVAVSSFGKTYHMTGWKVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQK 298 (386)
T ss_dssp --HTTEEEEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHH
T ss_pred --cCcEEEEecchhhcCCcccceEEEEc-CHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHH
Confidence 57889999999999989999999998 7888888876543 4677888888888887542 34567788899999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEEEEecCCCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFRCCFTSLTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iRi~~~~~~~ 316 (334)
++++.+.|++.|+++..+.+|+++|++++.... .+..++...|++++||.+.||..|+.. .++++|++++ .++
T Consensus 299 ~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~-~~~ 373 (386)
T 1u08_A 299 RDILVNALNESRLEILPCEGTYFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA-KKE 373 (386)
T ss_dssp HHHHHHHTTSSSCEECCCCBSSEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC-SCH
T ss_pred HHHHHHHHHHCCCeecCCCceEEEEEecCCCCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc-CCH
Confidence 999999999889988888889999999875310 134678888777799999999877542 4679999998 688
Q ss_pred ccHHHHHHHHHH
Q 019899 317 EDIPLVIERIQK 328 (334)
Q Consensus 317 ~~l~~~l~~l~~ 328 (334)
+++++++++|++
T Consensus 374 ~~i~~~~~~l~~ 385 (386)
T 1u08_A 374 STLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998864
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=318.98 Aligned_cols=312 Identities=18% Similarity=0.217 Sum_probs=257.7
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCC-CCcccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST-DNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~~ 80 (334)
++|+.+..+ +++++++|++|+|+++++..++.+++++||+|+++.|+|+++...+. ..|.+++.+|+.++ +.+.+|
T Consensus 76 a~~l~~~~g--~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~g~~~~d 152 (399)
T 1c7n_A 76 KKWMKDRHQ--WDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-NQERKIIECELLEKDGYYTID 152 (399)
T ss_dssp HHHHHHHHC--CCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-TTTCEEEECCCEEETTEEECC
T ss_pred HHHHHHHhC--CCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-HcCCEEEecccccCCCCEEEc
Confidence 455555445 55778899999999999999999999999999999999999999988 88999999987422 246799
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ .++++|++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++..+.++..+.. +
T Consensus 153 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~ 225 (399)
T 1c7n_A 153 FQKLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDE--Q 225 (399)
T ss_dssp HHHHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCH--H
T ss_pred HHHHHHHhcc-----CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCc--c
Confidence 9999999973 27899999999999999999999999999999999999999999999887655555554421 0
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc---CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC---SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
. .++++++.|+||.+|++|+|+||++++++++.+.++.....+ +.+++.+.++..++... .+++++.++++++
T Consensus 226 ~-~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~ 301 (399)
T 1c7n_A 226 L-ADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDK 301 (399)
T ss_dssp H-HTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHH
T ss_pred c-cCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHH
Confidence 0 367899999999999999999999996678888887655443 56888888887777542 3556778889999
Q ss_pred HHHHHHHHHHh-C-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 238 LYDSFVAGLKQ-L-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 238 ~~~~~~~~l~~-~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++++.+.|++ + ++++..+.+++++|++++... .+..++...|++++||.+.||..|+...++++|++++ ..
T Consensus 302 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~ 375 (399)
T 1c7n_A 302 NQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK-----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-AP 375 (399)
T ss_dssp HHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC-SC
T ss_pred HHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCC-----CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEec-cC
Confidence 99999999988 5 888888889999999987531 1345788887667899999999887555789999999 55
Q ss_pred cccHHHHHHHHHHHHHHc
Q 019899 316 HEDIPLVIERIQKVAETC 333 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~~~ 333 (334)
++++++++++|++++++.
T Consensus 376 ~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 376 SSVIQESLERLNKALKDL 393 (399)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999998764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=325.89 Aligned_cols=317 Identities=17% Similarity=0.344 Sum_probs=264.8
Q ss_pred ChhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC------
Q 019899 1 MAGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS------ 73 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~------ 73 (334)
+++|+.+.++ +.+++ ++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+++.+
T Consensus 76 la~~~~~~~g--~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~G 152 (422)
T 3fvs_A 76 LASFFGELLG--QEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTM-MAGGRPVFVSLKPGPIQNG 152 (422)
T ss_dssp HHHHHHHHHT--CCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECBCCCCCSS
T ss_pred HHHHHHHhhC--CCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHH-HcCCEEEEEeccccccccc
Confidence 3566666666 56777 699999999999999999999999999999999999999988 8999999999864
Q ss_pred ----CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc
Q 019899 74 ----TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF 149 (334)
Q Consensus 74 ----~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~ 149 (334)
++++.+|++++++++++ ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.+++..+
T Consensus 153 ~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 226 (422)
T 3fvs_A 153 ELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQH 226 (422)
T ss_dssp SCCBGGGSBCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred ccccccCCCCCHHHHHhhcCC------CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCC
Confidence 23567899999998875 79999999999999999999999999999999999999999999999887766
Q ss_pred chhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChH----H
Q 019899 150 VSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTK----F 223 (334)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~----~ 223 (334)
.++..+.. +.++++++.|+||.+|++|+|+||+++ ++++++.+..... .++.+++.+.++..++.... .
T Consensus 227 ~~~~~~~~----~~~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 301 (422)
T 3fvs_A 227 ISIASLPG----MWERTLTIGSAGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQ 301 (422)
T ss_dssp CCGGGSTT----TGGGEEEEEEHHHHHTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CChhhccc----ccCcEEEEecchhccCCccceEEEEEe-CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccc
Confidence 66666543 157889999999999999999999998 8888888876543 56788999998888885310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcC---C---C-CChhhHHHHHHHHHHhcCeEEcCC
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLI---P---S-YSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~---~---~-~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
..+++.+++++++++++++.+.|++.|+++..+.+++++|++++... . . .......+++..+++++||.+.||
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g 381 (422)
T 3fvs_A 302 PSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPV 381 (422)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCc
Confidence 13456778899999999999999999999888999999999886521 0 0 000114578888888899999999
Q ss_pred CCcCC-----CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 297 SACHC-----IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 297 ~~~~~-----~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
+.|+. ..++++|++++ .+++++++++++|++++++
T Consensus 382 ~~f~~~~~~~~~~~~iRis~~-~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 382 SIFYSVPHQKHFDHYIRFCFV-KDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp GGGSCHHHHTTSCSEEEEECC-CCHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCcCCCCCCCeEEEEec-CCHHHHHHHHHHHHHHHhh
Confidence 98863 34689999999 5999999999999999875
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=321.02 Aligned_cols=310 Identities=19% Similarity=0.271 Sum_probs=265.3
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC-CCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR-STDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~~~ 80 (334)
++++.+..+ +.+++++|++++|+++|+..++.++.++||+|+++.|+|.++...+. ..|.+++.+|+. .++++.+|
T Consensus 106 ~~~l~~~~g--~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~~d 182 (421)
T 3l8a_A 106 IDWERKEHD--YAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIR-LNDHRLVENSLQIINGRFEID 182 (421)
T ss_dssp HHHHHHHHC--CCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHH-HTTEEEEEEECEEETTEEECC
T ss_pred HHHHHHHhC--CCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-HCCCEEEeccccccCCCeeeC
Confidence 567777666 66788999999999999999999999999999999999999999988 899999999985 45667899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++|++++++ .++++|++++|+||||.+++.+++++|.++|++||+++|+||+|+++.+++..+.++..+..+
T Consensus 183 ~~~le~~i~~-----~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-- 255 (421)
T 3l8a_A 183 FEQLEKDIID-----NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDAS-- 255 (421)
T ss_dssp HHHHHHHHHH-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTT--
T ss_pred HHHHHHHhhc-----cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCch--
Confidence 9999999985 289999999999999999999999999999999999999999999999888766666665431
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh---cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT---RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
. .++++++.|+||.+|++|+|+||++++++++++.+.... ..++.|++.+.++..++... +++++++++++++
T Consensus 256 ~-~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~---~~~~~~~~~~~~~ 331 (421)
T 3l8a_A 256 Y-KDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG---KPWLEELKTVIEG 331 (421)
T ss_dssp G-GGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHH
T ss_pred h-cCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHH
Confidence 1 477899999999999899999999995589988887654 33467888888888887632 4567788889999
Q ss_pred HHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 238 LYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 238 ~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
+++++.+.|++. ++.+..+.++++.|++++.... +..++...|++++||.+.||..|+...++++|++++ .++
T Consensus 332 ~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~ 405 (421)
T 3l8a_A 332 NIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAI-----AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPK 405 (421)
T ss_dssp HHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTC-----CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-SCH
T ss_pred HHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCC-----CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec-CCH
Confidence 999999999886 8888899999999999986311 235788887777899999999998766799999999 789
Q ss_pred ccHHHHHHHHHHHHH
Q 019899 317 EDIPLVIERIQKVAE 331 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~ 331 (334)
+++++++++|+++++
T Consensus 406 ~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 406 NTVQEALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=314.35 Aligned_cols=300 Identities=21% Similarity=0.341 Sum_probs=251.4
Q ss_pred hhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
++|+.+.++ ..++++ +|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.+|+ ++++.+|
T Consensus 73 a~~~~~~~g--~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~~~~--~~~~~~d 147 (376)
T 2dou_A 73 ARWYEGRYG--VGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAAR-VASLRTFLIPL--REDGLAD 147 (376)
T ss_dssp HHHHHHHHS--CCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-HTTCEEEEECB--CTTSSBC
T ss_pred HHHHHHHhC--CCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHH-HcCCEEEEeeC--CCCCCCC
Confidence 455555445 555666 99999999999999999999999999999999999999988 89999999998 5667789
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++. ..+...+..
T Consensus 148 ~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~--- 217 (376)
T 2dou_A 148 LKAVPEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALPG--- 217 (376)
T ss_dssp GGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSTT---
T ss_pred HHHHHHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCC---
Confidence 9999999975 789999999999999999999999999999999999999999999887652 223333221
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..++++++.|+||.+|++|+|+||+++ ++++++.++..... ++.+++.+.++..+++.. ++++.+.+++++++
T Consensus 218 -~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~ 292 (376)
T 2dou_A 218 -AKERVVELFSLSKSYNLAGFRLGFALG-SEEALARLERVKGVIDFNQYAGVLRMGVEALKTP---KEVVRGYARVYRER 292 (376)
T ss_dssp -GGGTEEEEEEHHHHHTCGGGCCEEEEE-CHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC---HHHHHHHHHHHHHH
T ss_pred -CCCcEEEEecchhhcCChhheeEEEec-CHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHH
Confidence 146789999999999989999999998 88998888765443 467889999999888763 45567888899999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++++.+.|++. +++..+.+|+++|++++... +..++...|++ +||.+.||..|+...++++|++++ .++++
T Consensus 293 ~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~g~~f~~~~~~~~Ris~~-~~~~~ 363 (376)
T 2dou_A 293 ALGMAEALKGV-LSLLPPRATMYLWGRLPEGV------DDLEFGLRLVE-RGVALAPGRGFGPGGKGFVRIALV-RPLEE 363 (376)
T ss_dssp HHHHHHHHTTT-SEECCCCBSSEEEEECCTTC------CHHHHHHHHHH-TTEECEEGGGGCGGGTTEEEEECC-SCHHH
T ss_pred HHHHHHHHHHh-cCccCCCeeEEEEEECCCCC------CHHHHHHHHHH-CCEEEcCchhhCCCCCCeEEEEec-CCHHH
Confidence 99999999988 77777888999999997532 34578888666 599999999887545689999998 58899
Q ss_pred HHHHHHHHHHHH
Q 019899 319 IPLVIERIQKVA 330 (334)
Q Consensus 319 l~~~l~~l~~~~ 330 (334)
+++++++|++++
T Consensus 364 i~~~l~~l~~~l 375 (376)
T 2dou_A 364 LLEAAKRIREAL 375 (376)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-43 Score=314.45 Aligned_cols=301 Identities=22% Similarity=0.386 Sum_probs=255.2
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++++.+.++ +++++++|++|+|+++++..++.+++++||+|++++|+|.++...++ ..|.+++.+++++++++.+|+
T Consensus 78 a~~~~~~~g--~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~ 154 (391)
T 3h14_A 78 ARLYGEWYG--VDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILR-ALGLVPVDLPTAPENRLQPVP 154 (391)
T ss_dssp HHHHHHHHC--CCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-HTTCEEEEEECCGGGTTSCCH
T ss_pred HHHHHHHhC--CCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-HcCCEEEEeecCcccCCCCCH
Confidence 556666556 66889999999999999999999999999999999999999999998 899999999987666778899
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
++++++ ++++|++++|+||||.++|.+++++|+++|++||+++|+||+|+++.+++.. .+...+
T Consensus 155 ~~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~------ 218 (391)
T 3h14_A 155 ADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA-VTALEL------ 218 (391)
T ss_dssp HHHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-CCGGGT------
T ss_pred HHHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC-cChhhc------
Confidence 988765 5789999999999999999999999999999999999999999998887642 233222
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
.++++++.|+||.+|++|+|+||+++ ++++.+.+..... .++.+++.+.++..++.. .+++.+.++++++++
T Consensus 219 -~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~ 292 (391)
T 3h14_A 219 -TDECYVINSFSKYFSMTGWRVGWMVV-PEDQVRVVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANR 292 (391)
T ss_dssp -CSSSEEEEESSSTTCCTTSCCEEEEC-CGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHH
T ss_pred -CCCEEEEEechhccCCccceeEEEEe-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHH
Confidence 57789999999999999999999998 7788888876544 346788888888888773 355677888999999
Q ss_pred HHHHHHHHhCCCcc-cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-CCCCeEEEEecCCCcc
Q 019899 240 DSFVAGLKQLGIRC-SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC-IEPGWFRCCFTSLTHE 317 (334)
Q Consensus 240 ~~~~~~l~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~~iRi~~~~~~~~ 317 (334)
+++.+.|+++++.. ..+.+++++|++++... .+..++...|++++||.+.||..|+. ..++++|++++ .+++
T Consensus 293 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~-~~~~ 366 (391)
T 3h14_A 293 KLMLERLPKAGFTRIAPPDGAFYVYADVSDLT-----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYA-RATA 366 (391)
T ss_dssp HHHHHHHHHHTCCCBCCCCBTTEEEEECTTTC-----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECC-SCHH
T ss_pred HHHHHHHHHcCCCcccCCCeeEEEEEecCccC-----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEec-CCHH
Confidence 99999999887664 46778899999987531 13468888888877999999999876 34689999999 5889
Q ss_pred cHHHHHHHHHHHHHHc
Q 019899 318 DIPLVIERIQKVAETC 333 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~ 333 (334)
++++++++|+++++++
T Consensus 367 ~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 367 DIEEGLDRLEAFMQAR 382 (391)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=320.92 Aligned_cols=310 Identities=22% Similarity=0.347 Sum_probs=256.5
Q ss_pred hhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCC-CCccc
Q 019899 2 AGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST-DNFAF 79 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~ 79 (334)
++|+.+.++ ++++++ +|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.++++++ +++.+
T Consensus 72 a~~~~~~~g--~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~ 148 (411)
T 2o0r_A 72 AAQRRRHFG--VDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVA-MAGAHRVTVPLVPDGRGFAL 148 (411)
T ss_dssp HHHHHHHHC--CCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECEEETTEEEC
T ss_pred HHHHHHHcC--CCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH-HcCCEEEEeeccccccCCCC
Confidence 455555555 557788 99999999999999999999999999999999999999888 89999999997532 35679
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ ++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++..+.++..+..
T Consensus 149 d~~~l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-- 220 (411)
T 2o0r_A 149 DADALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDG-- 220 (411)
T ss_dssp CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT--
T ss_pred CHHHHHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccC--
Confidence 99999999875 7899999999999999999999999999999999999999999998887655555554422
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..++++++.|+||.+|++|+|+||+++ ++++++.+..... .++.+++.+.++..+++.. ++++.+.++++++
T Consensus 221 --~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~ 294 (411)
T 2o0r_A 221 --MAERTITISSAAKMFNCTGWKIGWACG-PAELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRA 294 (411)
T ss_dssp --TGGGEEEEEEHHHHTTCTTTCEEEEEC-CHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---HHHHHHHHHHHHH
T ss_pred --CCCCEEEEeechhhcCCccceEEEEee-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHH
Confidence 146789999999999999999999998 7888888876543 4667888888888887532 4566788889999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-----------CCCe
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-----------EPGW 306 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-----------~~~~ 306 (334)
+++++.+.|++.|+++..+.+|+++|++++.... .+..++...|++++||.+.||..|... .+++
T Consensus 295 ~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~ 370 (411)
T 2o0r_A 295 RRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLGY----DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHL 370 (411)
T ss_dssp HHHHHHHHHHHHTCEECCCCBSSEEEEECGGGTC----CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGC
T ss_pred HHHHHHHHHHHcCCEecCCCeeEEEEEecCCCCC----CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCe
Confidence 9999999998889988888889999999975310 134678888777789999999887322 2578
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 307 FRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 307 iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+|++++ .+++++++++++|++++++.
T Consensus 371 iRis~~-~~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 371 VRFTFC-KRDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp EEEECC-SCHHHHHHHHHHHGGGGC--
T ss_pred EEEEec-CCHHHHHHHHHHHHHHHhcc
Confidence 999998 58899999999999887653
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=314.95 Aligned_cols=308 Identities=18% Similarity=0.364 Sum_probs=257.7
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+.++ +.+++++|++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.++.++++++.+|+
T Consensus 77 a~~~~~~~g--~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~ 153 (388)
T 1j32_A 77 AQKLQRDNG--LCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-LAEGTPVILPTTVETQFKVSP 153 (388)
T ss_dssp HHHHHHHHC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-HTTCEEEEECCCGGGTTCCCH
T ss_pred HHHHHHhcC--CCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-HcCCEEEEecCCcccCCCCCH
Confidence 556665555 55678899999999999999999999999999999999999999888 899999999986545678999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++++|+||||.++|.+++++|+++|+++|+++|+|++|+.+.+++..+.++..+..+ .
T Consensus 154 ~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--~ 225 (388)
T 1j32_A 154 EQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE--A 225 (388)
T ss_dssp HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH--H
T ss_pred HHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcccc--c
Confidence 999999875 78999999999999999999999999999999999999999999998876554455544220 0
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
.++++++.|+||.+|++|+|+||+++ ++++.+.+..... .++.+++.+.++..++... .+++.+.++++++++
T Consensus 226 -~~~~~~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~ 300 (388)
T 1j32_A 226 -YERSVVCSGFAKTYAMTGWRVGFLAG-PVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERR 300 (388)
T ss_dssp -HHTEEEEEESTTTTTCTTTCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHH
T ss_pred -cCCEEEEeechhccCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHH
Confidence 35789999999999989999999998 8888888876543 3567888888887777642 345577788899999
Q ss_pred HHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 240 DSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 240 ~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
+++.+.|++. |+++..+.+++++|++++... .+..++...|++++||.+.||..|+. ++++|++++ .++++
T Consensus 301 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~ 372 (388)
T 1j32_A 301 RYMLDALNAMPGLECPKPDGAFYMFPSIAKTG-----RSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYA-TDLDT 372 (388)
T ss_dssp HHHHHHHHTCTTCBCCCCCBTTEECCBCGGGT-----CCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECC-SCHHH
T ss_pred HHHHHHHhhCCCCcccCCCeeEEEEEecCCCC-----CCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEec-CCHHH
Confidence 9999999987 888888888999998886420 13467888877768999999988864 679999998 78999
Q ss_pred HHHHHHHHHHHHHHc
Q 019899 319 IPLVIERIQKVAETC 333 (334)
Q Consensus 319 l~~~l~~l~~~~~~~ 333 (334)
+++++++|++++++.
T Consensus 373 i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 373 IKRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=320.09 Aligned_cols=312 Identities=20% Similarity=0.326 Sum_probs=260.4
Q ss_pred hhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC-------
Q 019899 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS------- 73 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~------- 73 (334)
++|+.+.++ ..+++ ++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+++.+
T Consensus 71 a~~~~~~~~--~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~ 147 (410)
T 3e2y_A 71 SCLYGKIYQ--RQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVR-MAGAVPVFIPLRSKPTDGMK 147 (410)
T ss_dssp HHHHHHHHT--SCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECEECCCCSSC
T ss_pred HHHHHHHhC--CCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-HcCCEEEEEecccccccccc
Confidence 566666666 56777 799999999999999999999999999999999999999998 8999999999752
Q ss_pred --CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 74 --TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 74 --~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
+.++.+|++++++++++ ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.+++..+.+
T Consensus 148 ~~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 221 (410)
T 3e2y_A 148 WTSSDWTFDPRELESKFSS------KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVK 221 (410)
T ss_dssp CBGGGEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC
T ss_pred ccccCCcCCHHHHHhhcCC------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCC
Confidence 24567899999998865 7999999999999999999999999999999999999999999999988766666
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCCh----HHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDT----KFIQ 225 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~----~~~~ 225 (334)
+..+.. ..++++++.|+||.+|++|+|+||+++ ++++++.+..... .++.+++.+.++..++... ....
T Consensus 222 ~~~~~~----~~~~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 296 (410)
T 3e2y_A 222 IATLPG----MWERTITIGSAGKTFSVTGWKLGWSIG-PAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPE 296 (410)
T ss_dssp GGGSTT----CGGGEEEEEEHHHHSSCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTT
T ss_pred HHHcCC----ccCeEEEEecchhhcCCCCceEEEEEE-CHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchH
Confidence 665543 257889999999999999999999998 8888888876543 5678899999888887520 0113
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCC-----ChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSY-----SEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
+++.+++++++++++++.+.|++.|+++..+.+++++|++++...... ...+..+++..+++++||.+.||+.|+
T Consensus 297 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~ 376 (410)
T 3e2y_A 297 CYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFC 376 (410)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhC
Confidence 456778889999999999999999999888999999999987532211 112335788888888999999999886
Q ss_pred CC-----CCCeEEEEecCCCcccHHHHHHHHHH
Q 019899 301 CI-----EPGWFRCCFTSLTHEDIPLVIERIQK 328 (334)
Q Consensus 301 ~~-----~~~~iRi~~~~~~~~~l~~~l~~l~~ 328 (334)
.. .++++|++++ .+++++++++++|++
T Consensus 377 ~~~~~~~~~~~iRis~~-~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 377 DSKSKPHFEKLVRFCFI-KKDSTLDAAEEIFRA 408 (410)
T ss_dssp CTTTHHHHTTEEEEECC-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEEEc-CCHHHHHHHHHHHHh
Confidence 43 2589999998 699999999999875
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=313.42 Aligned_cols=299 Identities=27% Similarity=0.432 Sum_probs=253.1
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ +.+++++|++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.+|.++++++.+|+
T Consensus 88 a~~~~~~~g--~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~ 164 (389)
T 1o4s_A 88 AKRIGERYK--KDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII-LAGGTVNVVETFMSKNFQPSL 164 (389)
T ss_dssp HHHHHHHHT--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECCGGGTTCCCH
T ss_pred HHHHHHHhC--CCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-HcCCEEEEEecCCccCCCCCH
Confidence 455555445 55678899999999999999999999999999999999999999988 899999999986445678999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++ ...++..+..
T Consensus 165 ~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~---- 233 (389)
T 1o4s_A 165 EEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSE---- 233 (389)
T ss_dssp HHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCS----
T ss_pred HHHHHhccc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCC----
Confidence 999998875 78999999999999999999999999999999999999999999988765 3345555432
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
..++++++.|+||.+|++|+|+||+++ ++++.+.+..... .++.+++.+.++..++... +.+.++++++++
T Consensus 234 ~~~~~i~~~s~sK~~~~~G~r~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~ 306 (389)
T 1o4s_A 234 GFDRIVYINGFSKSHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERK 306 (389)
T ss_dssp SSTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHH
T ss_pred CCCcEEEEeechhhcCCcccceEEEEe-CHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHH
Confidence 147899999999999989999999998 8888888876544 3577888898888888764 356677888899
Q ss_pred HHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccH
Q 019899 240 DSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDI 319 (334)
Q Consensus 240 ~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l 319 (334)
+++.+.|++.|+++..+.+++++|++++ . +..++...|++++||.+.||..|+. ++++|++++ .+++++
T Consensus 307 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~--~------~~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~-~~~~~l 375 (389)
T 1o4s_A 307 NFVVERLKKMGVKFVEPEGAFYLFFKVR--G------DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFA-TSIERL 375 (389)
T ss_dssp HHHHHHHHHTTCCCCCCSBSSEEEEECS--S------CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECC-SCHHHH
T ss_pred HHHHHHHHhcCCeeecCCcceEEEEeCC--C------CHHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEe-CCHHHH
Confidence 9999999888888888888999999887 1 3467888877678999999988864 569999999 589999
Q ss_pred HHHHHHHHHHHHH
Q 019899 320 PLVIERIQKVAET 332 (334)
Q Consensus 320 ~~~l~~l~~~~~~ 332 (334)
++++++|.+++++
T Consensus 376 ~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 376 TEALDRIEDFLNS 388 (389)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998854
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=314.25 Aligned_cols=298 Identities=22% Similarity=0.453 Sum_probs=248.1
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCC-CeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHG-NALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~g-d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+++|+.+.++ +++++++|++|+|+++++..++.+++++| |+|++++|+|+++...++ ..|.+++.+|+++ +++.+
T Consensus 85 la~~l~~~~g--~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~-~~g~~~~~v~~~~-~~~~~ 160 (398)
T 3ele_A 85 IAEFLNNTHG--THFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVN-AAGARLVEVPADT-EHFQI 160 (398)
T ss_dssp HHHHHHHHHC--CCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHH-HTTCEEEEECCCT-TTSSC
T ss_pred HHHHHHHHhC--CCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHH-HcCCEEEEEecCC-cCCcC
Confidence 3566766666 66889999999999999999999999999 999999999999999998 8999999999853 46789
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh------cCcEEEEeccccccccCCCCcchhh
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE------KNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~------~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
|++++++++++ +++++++++|+||||.++|.+++++|+++|++ ||+++|+||+|+++.+++.......
T Consensus 161 d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 234 (398)
T 3ele_A 161 DFDALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVT 234 (398)
T ss_dssp CHHHHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGG
T ss_pred CHHHHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChH
Confidence 99999999875 79999999999999999999999999999999 9999999999999988764433332
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCH-----HHHHHHHHhh---cccCCChHHHHHHHHhhCChHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE-----SVLAAAKKLT---RFCSISAPTQRLLISMLSDTKFIQ 225 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~ 225 (334)
.. .++++++.|+||.+|++|+|+||++++++ .+.+.+.... ..++.+.+.+.++..++...+
T Consensus 235 ~~-------~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--- 304 (398)
T 3ele_A 235 KY-------YDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG--- 304 (398)
T ss_dssp GT-------CSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC---
T ss_pred hh-------cCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH---
Confidence 21 57889999999999999999999998443 2334443322 235667788888887776542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCC
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~ 305 (334)
.+++++++++++.+.|+++|+++..+.+++++|++++.. +..++... ++++||.+.||..|+. ++
T Consensus 305 -----~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-l~~~gi~v~~g~~~~~--~~ 369 (398)
T 3ele_A 305 -----DINAYKENRDLLYEGLTRIGYHCFKPDGAFYMFVKALED-------DSNAFCEK-AKEEDVLIVAADGFGC--PG 369 (398)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECSSS-------CHHHHHHH-HHTTTEECEESGGGTC--TT
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCeecCCCeeEEEEEEcCCC-------CHHHHHHH-HHHCCEEEeCccccCC--CC
Confidence 245677888888999988899988899999999998753 34577776 5668999999998875 67
Q ss_pred eEEEEecCCCcccHHHHHHHHHHHHHHcC
Q 019899 306 WFRCCFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 306 ~iRi~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
++|++++ .+++++++++++|++++++++
T Consensus 370 ~iRis~~-~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 370 WVRISYC-VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp EEEEECC-SCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEec-CCHHHHHHHHHHHHHHHHHhh
Confidence 9999998 899999999999999998764
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=314.61 Aligned_cols=307 Identities=17% Similarity=0.298 Sum_probs=259.0
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC--CCCCccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR--STDNFAF 79 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~--~~~~~~~ 79 (334)
++++.+.++ +.+++++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+++. .++++.+
T Consensus 77 ~~~l~~~~g--~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 153 (391)
T 4dq6_A 77 VNWLYRRHN--WKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVK-NNNRELIISPLQKLENGNYIM 153 (391)
T ss_dssp HHHHHHHHC--CCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHH-HTTCEEEECCCEECTTSCEEC
T ss_pred HHHHHHHhC--CCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHH-HcCCeEEeeeeeecCCCceEe
Confidence 456666555 55788999999999999999999999999999999999999999998 899999999986 4456779
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ ++++++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.+++....++..+..+
T Consensus 154 d~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~- 225 (391)
T 4dq6_A 154 DYEDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKE- 225 (391)
T ss_dssp CHHHHHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHH-
T ss_pred eHHHHHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcc-
Confidence 99999998862 7899999999999999999999999999999999999999999998877665666554320
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc---ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR---FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
. .++++++.|+||.+|++|+|+||++++++++.+.+..... .++.+++.+.++..++... ++++.+.+++++
T Consensus 226 -~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~ 300 (391)
T 4dq6_A 226 -F-EKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG---ESWLESFLEYLE 300 (391)
T ss_dssp -H-HHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHH
T ss_pred -c-cCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch---HHHHHHHHHHHH
Confidence 0 3678999999999999999999999866788888876533 3467888888887777542 345678888999
Q ss_pred HHHHHHHHHHHhC--CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCC
Q 019899 237 KLYDSFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSL 314 (334)
Q Consensus 237 ~~~~~~~~~l~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~ 314 (334)
++++++.+.|++. ++++..+.+++++|++++... .+..++...|++++||.+.||..|+...++++|++++ .
T Consensus 301 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~ 374 (391)
T 4dq6_A 301 SNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALG-----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA-C 374 (391)
T ss_dssp HHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC-S
T ss_pred HHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcC-----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc-C
Confidence 9999999999884 888889999999999998521 1346888887775599999999998766799999999 7
Q ss_pred CcccHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVA 330 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~ 330 (334)
+++++++++++|++++
T Consensus 375 ~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 375 PRSMLEEALIRIKNAI 390 (391)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8999999999999876
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-43 Score=314.17 Aligned_cols=310 Identities=16% Similarity=0.253 Sum_probs=254.8
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCC-Ccccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD-NFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~-~~~~~ 80 (334)
++|+.+..+ +.+++++|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.+|++.++ ++.+|
T Consensus 74 a~~l~~~~g--~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d 150 (390)
T 1d2f_A 74 AHWFSTQHY--TAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-GNQRTVMPVALEKQADGWFCD 150 (390)
T ss_dssp HHHHHHHSC--CCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHH-HTTCEEEEEECEECSSSEECC
T ss_pred HHHHHHhcC--CCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHH-HCCCEEEEeecccCCCccccC
Confidence 455554444 55788999999999999999999999999999999999999999988 899999999985432 46799
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ .++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++..+.++..+..
T Consensus 151 ~~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--- 222 (390)
T 1d2f_A 151 MGKLEAVLAK-----PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR--- 222 (390)
T ss_dssp HHHHHHHHTS-----TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCC---
T ss_pred HHHHHHHhcc-----CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcch---
Confidence 9999999874 26899999999999999999999999999999999999999999999887665556555432
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc---c-cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR---F-CSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
.-... +.|+||.+|++|+|+||++++++++.+.++.... . ++.+++.+.++..++... .+++.+.+++++
T Consensus 223 --~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~ 296 (390)
T 1d2f_A 223 --GDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLK 296 (390)
T ss_dssp --SSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHH
T ss_pred --hhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 10123 8999999999999999999866888888876543 3 367888888877777532 445677888999
Q ss_pred HHHHHHHHHHHh-C-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCC
Q 019899 237 KLYDSFVAGLKQ-L-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSL 314 (334)
Q Consensus 237 ~~~~~~~~~l~~-~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~ 314 (334)
++++++.+.|++ + ++++..+.+++++|++++... .+..++...|++++||.+.||..|+...++++|++++ .
T Consensus 297 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~-~ 370 (390)
T 1d2f_A 297 DNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN-----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG-C 370 (390)
T ss_dssp HHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-S
T ss_pred HHHHHHHHHHHhhCCCCEEecCCccEEEEEEccccC-----CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEec-C
Confidence 999999999988 5 788888888999999987530 1346788887757899999999887545689999999 5
Q ss_pred CcccHHHHHHHHHHHHHHcC
Q 019899 315 THEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~~~ 334 (334)
+++++++++++|++++++.+
T Consensus 371 ~~~~l~~~l~~l~~~l~~~~ 390 (390)
T 1d2f_A 371 PRSKLEKGVAGLINAIRAVR 390 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhhC
Confidence 68899999999999998753
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=315.78 Aligned_cols=310 Identities=20% Similarity=0.339 Sum_probs=255.3
Q ss_pred hhhhhhhhcCCCC-CCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 2 AGFMSQVLGQAVS-FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
|+|+.++.+ +. +++++|++|+|+++++..++.+++++||+|++++|+|.++...++ ..|.+++.+|+++ + .+|
T Consensus 95 a~~l~~~~g--~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~-~--~~d 168 (425)
T 1vp4_A 95 LKLLERMYG--ITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFR-QYLANFVVVPLED-D--GMD 168 (425)
T ss_dssp HHHHHHHHC--CCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-TTTCEEEEEEEET-T--EEC
T ss_pred HHHHHhccC--CCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-HcCCEEEEeccCC-C--CCC
Confidence 445544334 44 678899999999999999999999999999999999999999998 8999999999743 2 489
Q ss_pred HHHHHHHHHHHHHc--CCceeEE-EEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 81 ITALDQAFNQARKR--GVKVRGI-LICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 81 ~~~l~~~l~~~~~~--~~~~~~i-~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
++++++++++...+ +.++++| ++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++....++..+..
T Consensus 169 ~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 248 (425)
T 1vp4_A 169 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG 248 (425)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC
T ss_pred HHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCC
Confidence 99999999863221 1268887 47899999999999999999999999999999999999999887665556666543
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.++++++.|+||.++ +|+|+||+++ ++++++.+...... ++.+++.+.++..+++... .++++.+.++++
T Consensus 249 -----~~~~i~~~s~sK~~~-~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~ 320 (425)
T 1vp4_A 249 -----PERVVLLNTFSKVLA-PGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAITHRLAARYLERYD-LLEQLKPTIELY 320 (425)
T ss_dssp -----TTTEEEEEESTTTTC-GGGCEEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC-HHHHTHHHHHHH
T ss_pred -----CCCEEEEeccccccc-cccceEEEee-CHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 578899999999999 9999999998 78888888765433 5678899999888886532 255677888899
Q ss_pred HHHHHHHHHHHHhC-----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEE
Q 019899 236 KKLYDSFVAGLKQL-----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFR 308 (334)
Q Consensus 236 ~~~~~~~~~~l~~~-----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iR 308 (334)
+++++++.+.|++. |+++..+.+|+++|++++...+ ..++...|++ +||.+.||..|+.. .++++|
T Consensus 321 ~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~------~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~iR 393 (425)
T 1vp4_A 321 RRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFD------TWEMFEYAKR-KKVFYVPGRVFKVYDEPSPSMR 393 (425)
T ss_dssp HHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCC------TTTTHHHHHH-HTEECEEGGGGCTTCCCCSEEE
T ss_pred HHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCC------HHHHHHHHHH-CCCEEECchhhcCCCCCCCeEE
Confidence 99999999999875 6887778889999999985322 2467888666 49999999988643 357999
Q ss_pred EEecCCCcccHHHHHHHHHHHHHH
Q 019899 309 CCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 309 i~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
++++..+++++++++++|++++++
T Consensus 394 is~~~~~~e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 394 LSFCLPPDEKIVEGIKRLREVVLE 417 (425)
T ss_dssp EECSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHH
Confidence 999855889999999999998865
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=311.35 Aligned_cols=301 Identities=17% Similarity=0.198 Sum_probs=248.4
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCC--CCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADH--GNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~--gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
++|+.+.++ +.+++++|++|+|+++++..++.+++++ ||+|+++.|+|.++...++ ..|.+++.++++++++ +
T Consensus 69 a~~l~~~~g--~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~--~ 143 (376)
T 3ezs_A 69 RGFFKRRFK--IELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAK-FIKAKSLLMPLTKEND--F 143 (376)
T ss_dssp HHHHHHHHS--CCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHH-HTTCEEEEEECCGGGT--S
T ss_pred HHHHHHHhC--CCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHH-HcCCEEEEcccCCCCC--c
Confidence 556666555 5568899999999999999999999999 9999999999999999988 8999999999854433 3
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
++ ++++++++ +++++++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++. ..+......+.
T Consensus 144 ~~-~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~ 215 (376)
T 3ezs_A 144 TP-SLNEKELQ------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLA 215 (376)
T ss_dssp CC-CCCHHHHH------HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHT
T ss_pred ch-hHHhhhcc------CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccc
Confidence 44 66777765 789999999999999999999999999999999999999999999988763 33433332100
Q ss_pred c-cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 160 E-VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 160 ~-~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
+ ...++++++.|+||.+|++|+|+||+++ ++++++.+..... .++.+++.+.++..++...+ ++.+.+++++
T Consensus 216 ~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~ 290 (376)
T 3ezs_A 216 GNEAFKNVLVIHSLSKRSSAPGLRSGFIAG-DSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDR----HAEFFRNIYA 290 (376)
T ss_dssp TCTTCTTEEEEEESTTTTTCGGGCCEEEEE-CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSH----HHHHHHHHHH
T ss_pred cccccCcEEEEecchhccCCccceeEEEee-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcH----HHHHHHHHHH
Confidence 0 0168899999999999989999999998 8999998887654 46788999999888887643 3577788899
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC--CCCCCeEEEEecCC
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH--CIEPGWFRCCFTSL 314 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--~~~~~~iRi~~~~~ 314 (334)
++++++.+.|+ ++. .+.+++++|++++ +..++...|++++||.+.||..|+ ...++++|++++ .
T Consensus 291 ~~~~~l~~~l~--~~~--~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~-~ 356 (376)
T 3ezs_A 291 NNLKLARKIFK--NTL--IYPYSFYVYLPVQ---------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV-Y 356 (376)
T ss_dssp HHHHHHHHHST--TCC--CCSBSSEEEEECS---------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC-S
T ss_pred HHHHHHHHHhc--CCC--CCCcceEEEEECC---------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc-C
Confidence 99999999988 555 6778999999987 236788887776899999999987 345689999998 5
Q ss_pred CcccHHHHHHHHHHHHHHcC
Q 019899 315 THEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~~~ 334 (334)
+++++++++++|++++++++
T Consensus 357 ~~~~i~~~l~~l~~~l~~~~ 376 (376)
T 3ezs_A 357 DTPLLEKPLEIIETYRENHA 376 (376)
T ss_dssp CHHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999997653
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-43 Score=316.69 Aligned_cols=307 Identities=26% Similarity=0.408 Sum_probs=257.1
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ +++++++|++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.+++++++++.+|+
T Consensus 88 a~~l~~~~g--~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~ 164 (406)
T 1xi9_A 88 VEREKRKNG--VDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVK-FYGGKPVEYRTIEEEDWQPDI 164 (406)
T ss_dssp HHHHHHHHC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-HTTCEEEEEEEEGGGTSEECH
T ss_pred HHHHHHhcC--CCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHH-HcCCEEEEeecCCCcCCcCCH
Confidence 566666555 67788999999999999999999999999999999999999999888 899999999985435677899
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ ++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++ ...++..+.
T Consensus 165 ~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~----- 232 (406)
T 1xi9_A 165 DDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLT----- 232 (406)
T ss_dssp HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHC-----
T ss_pred HHHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcC-----
Confidence 999999875 78999999999999999999999999999999999999999999988743 334454441
Q ss_pred CCCc-EEEEecccccCCCCCceEEEEe--ecCH----HHHHHHHHhhcc-cCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 162 DKDR-VHIIYGLSKDLSLPGFRTGVIY--SYNE----SVLAAAKKLTRF-CSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 162 ~~~~-~~~~~s~sK~~~~~g~r~g~i~--~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
.++ ++++.|+||.++++|+|+||++ + ++ ++++.+...... ++.+++.+.++..+++.. .++++++++
T Consensus 233 -~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~ 307 (406)
T 1xi9_A 233 -KDVPVIVMNGLSKVYFATGWRLGYMYFVD-PENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMK 307 (406)
T ss_dssp -SSSCEEEEEESTTTTCCGGGCCEEEEEEC-TTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHH
T ss_pred -CCceEEEEeccccccCCCccEEEEEEEec-CchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC---cHHHHHHHH
Confidence 466 8999999999998999999999 7 66 888888765433 678889999988888532 223577788
Q ss_pred HHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec
Q 019899 234 RIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT 312 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~ 312 (334)
+++++++++.+.|++. ++++..+.+|+++|++++.... .+..++...|++++||.+.||..|+...++++|++++
T Consensus 308 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~ 383 (406)
T 1xi9_A 308 KLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL 383 (406)
T ss_dssp HHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCC----CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec
Confidence 8999999999999988 7888778889999988875211 1346788887767899999999887545689999999
Q ss_pred CCCcccHHHHHHHHHHHHHHc
Q 019899 313 SLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 313 ~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+++++++++++|++++++.
T Consensus 384 -~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 384 -PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp -SCHHHHHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-43 Score=316.82 Aligned_cols=304 Identities=23% Similarity=0.406 Sum_probs=249.9
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
+.+++++|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.+++++++++.+|++++++++++
T Consensus 100 ~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-- 176 (416)
T 1bw0_A 100 STIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCK-AYGIGMHFYNCRPENDWEADLDEIRRLKDD-- 176 (416)
T ss_dssp GGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-HTTCEEEEEEEEGGGTTEECHHHHHHHCCT--
T ss_pred CCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHH-HcCcEEEEeecCcccCCCCCHHHHHHHhcc--
Confidence 44778999999999999999999999999999999999999999888 899999999985444678999999999875
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC----CcchhhhhhhccccCCCcEEE
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE----EFVSMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 168 (334)
+++++++++|+||||.++|.+++++|+++|++||++||+||+|+.+.+++. .+.++..+.. .+++++
T Consensus 177 ----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~i~ 247 (416)
T 1bw0_A 177 ----KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET-----TVPRVI 247 (416)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCC-----SCCEEE
T ss_pred ----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccC-----CCcEEE
Confidence 688999999999999999999999999999999999999999999888765 3445444432 456889
Q ss_pred EecccccCCCCCceEEEEeecCH-----HHHHHHHHh-hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 019899 169 IYGLSKDLSLPGFRTGVIYSYNE-----SVLAAAKKL-TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 169 ~~s~sK~~~~~g~r~g~i~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
+.|+||.++++|+|+||++++++ .+...++.. ...++.+++.+.++..+++... .+++.+.+++++++++++
T Consensus 248 ~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l 325 (416)
T 1bw0_A 248 LGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESAMYL 325 (416)
T ss_dssp EEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHH
T ss_pred EecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHH
Confidence 99999999889999999998665 233333332 2356789999999998886422 445677788899999999
Q ss_pred HHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHH
Q 019899 243 VAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPL 321 (334)
Q Consensus 243 ~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~ 321 (334)
.+.|+++ |+++..+.+++++|++++..... ...+..++...|++++||.+.||..|+. ++++|++++ .+++++++
T Consensus 326 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~-~~~e~l~~ 401 (416)
T 1bw0_A 326 YNHIGECIGLAPTMPRGAMYLMSRIDLEKYR-DIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTT-RPVEVYRE 401 (416)
T ss_dssp HHHHTTSTTEEECCCCBTTEEEEEECGGGBS-SCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECC-SCHHHHHH
T ss_pred HHHHHhCCCCcccCCCeeEEEEEeCCHHHcC-CCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEec-CCHHHHHH
Confidence 9999987 78877788899999888642000 0023467888877779999999998864 679999997 78999999
Q ss_pred HHHHHHHHHHHcC
Q 019899 322 VIERIQKVAETCK 334 (334)
Q Consensus 322 ~l~~l~~~~~~~~ 334 (334)
++++|.+++++++
T Consensus 402 ~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 402 AVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=311.54 Aligned_cols=307 Identities=15% Similarity=0.230 Sum_probs=256.0
Q ss_pred hhhhhhhhcCCCCCCCCc---EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhc-cCcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPSQ---IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR-TGVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-~g~~v~~v~~~~~~~~ 77 (334)
|+|+.+. + +++++++ |++|+|+++++..++.+++++||+|++++|+|+++...++ . .|.+++.+++++++ +
T Consensus 98 a~~~~~~-~--~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-~~~g~~~~~~~~~~~~-~ 172 (430)
T 2x5f_A 98 QQKMLRD-N--PELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFN-TRNGANLQTYPIFDKD-G 172 (430)
T ss_dssp HHHHHHH-C--TTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHT-TTTCCEEEEECCBCTT-S
T ss_pred HHHHhcc-C--cccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHH-HhcCCeEEEEeccCcc-C
Confidence 4455442 2 4678889 9999999999999999999999999999999999999998 8 89999999985433 6
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-----cCcEEEEeccccccccCCCCcchh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE-----KNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~-----~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
.+|++++++++++. +.+++++++++|+||||.++|.+++++|+++|++ +|+++|+||+|+.+.+++..+.++
T Consensus 173 ~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 249 (430)
T 2x5f_A 173 HYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSL 249 (430)
T ss_dssp CBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCH
T ss_pred CcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHH
Confidence 89999999999752 2368899999999999999999999999999999 999999999999998876544455
Q ss_pred h-hhhhccccCCCc---EEEEecccccCCCCCceEEEEee--cCHHHHHHHHHhh------cccCCChHHHHHHHHhhC-
Q 019899 153 A-EILEAEEVDKDR---VHIIYGLSKDLSLPGFRTGVIYS--YNESVLAAAKKLT------RFCSISAPTQRLLISMLS- 219 (334)
Q Consensus 153 ~-~~~~~~~~~~~~---~~~~~s~sK~~~~~g~r~g~i~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~- 219 (334)
. .+.. ..++ ++++.|+||.+|++|+|+||+++ +++++.+.+.... ..++.+++.+.++..+++
T Consensus 250 ~~~~~~----~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 325 (430)
T 2x5f_A 250 FTALTN----LHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKN 325 (430)
T ss_dssp HHHHHT----TCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHS
T ss_pred HHHHhh----ccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHcc
Confidence 4 4432 1466 89999999999989999999997 4778888887654 346789999999999998
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLK----QLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
..++ .+.+.+.+++++++++.+.+.|+ +.|+++..+.+|+++|++++ .. +..++...|++++||.+.|
T Consensus 326 ~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~------~~~~~~~~l~~~~gi~v~~ 397 (430)
T 2x5f_A 326 NKQF-DKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DV------DPEALRKHLIDKYSIGVIA 397 (430)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SS------CHHHHHHHHHHHHCEECEE
T ss_pred ChHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CC------CHHHHHHHHHHhCCEEEec
Confidence 7644 34456688999999999999998 66888888889999999998 22 3467888876668999999
Q ss_pred CCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHcC
Q 019899 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
| .++++|++++..+++++++++++|++++++.+
T Consensus 398 g------~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 430 (430)
T 2x5f_A 398 L------NATDIRIAFSCVEKDDIPHVFDSIAKAIDDLR 430 (430)
T ss_dssp C------SSSEEEEEGGGSCGGGHHHHHHHHHHHHHHHC
T ss_pred C------CCCeEEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 7 25789999996689999999999999998753
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=307.82 Aligned_cols=312 Identities=22% Similarity=0.314 Sum_probs=255.6
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ +.+++++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+|.++ + .+|+
T Consensus 85 a~~~~~~~g--~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~v~~~~-~--~~d~ 158 (407)
T 2zc0_A 85 AAFLKKYDH--LEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFE-QLGAKIEGVPVDN-D--GMRV 158 (407)
T ss_dssp HHHHHHHSC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-TTTCEEEEEEEET-T--EECH
T ss_pred HHHHHHhcC--CCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-HcCCEEEEcccCC-C--CCCH
Confidence 444444334 45778999999999999999999999999999999999999999888 8999999999743 2 4899
Q ss_pred HHHHHHHHHHHHcCCceeEE-EEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGI-LICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i-~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++.....+.++++| ++++|+||||.++|.+++++|+++|++||+++|+|++|+.+.+++....++..+..
T Consensus 159 ~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--- 235 (407)
T 2zc0_A 159 DLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDN--- 235 (407)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCS---
T ss_pred HHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCC---
Confidence 99999997432222368887 47788999999999999999999999999999999999998887655555555533
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHH-HHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQ-EYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 237 (334)
.++++++.|+||.++ +|+|+||+++ ++++.+.++..... ++.+++.+.++..+++... .+ +++.+.++++++
T Consensus 236 --~~~~i~~~s~sK~~~-~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 310 (407)
T 2zc0_A 236 --EGRVIVAGTLSKVLG-TGFRIGWIIA-EGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGY-FEKYHLEGALLGYKE 310 (407)
T ss_dssp --SCCEEEEEESTTTTC-TTSCCEEEEC-CHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTH-HHHHTTTTHHHHHHH
T ss_pred --CCCEEEEcccccccC-CCcceEEEec-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCC-chHHHHHHHHHHHHH
Confidence 468899999999999 9999999998 78898888765443 4568899999988887653 24 566778888999
Q ss_pred HHHHHHHHHHhC--CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEEEEecC
Q 019899 238 LYDSFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFRCCFTS 313 (334)
Q Consensus 238 ~~~~~~~~l~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iRi~~~~ 313 (334)
+++++.+.|++. ++++..+.+++++|++++... +..++...|++++||.+.||..|+.. .++++|++++.
T Consensus 311 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~ 384 (407)
T 2zc0_A 311 KRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGA------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSR 384 (407)
T ss_dssp HHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTC------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSS
T ss_pred HHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCC------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCC
Confidence 999999999874 677777788999999997532 34678888777559999999888653 35799999985
Q ss_pred CCcccHHHHHHHHHHHHHHc
Q 019899 314 LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+++++++++++|++++++.
T Consensus 385 ~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 385 PSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp SCTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998763
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=301.85 Aligned_cols=296 Identities=17% Similarity=0.250 Sum_probs=250.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.++.+ .++.+|++++
T Consensus 56 l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~--~~~~~d~~~l 132 (354)
T 3ly1_A 56 LGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAK-IAGMKVTKVKML--DNWAFDIEGL 132 (354)
T ss_dssp HHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-HTTCEEEEECCC--TTSCCCHHHH
T ss_pred HHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHH-HcCCEEEEecCC--CCCCCCHHHH
Confidence 3444555566788999999999999999999999999999999999999999998 899999999984 3578999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC-
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK- 163 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (334)
++++++ ..++++|++++|+||||.++|.+++.+|+++| ++|+++|+|++|+.+.+++.....+..... .
T Consensus 133 ~~~l~~----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~-----~~ 202 (354)
T 3ly1_A 133 KAAVAA----YSGPSIVYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQ-----GA 202 (354)
T ss_dssp HHHHHT----CSSCEEEEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHT-----TC
T ss_pred HHHhcc----CCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhh-----cC
Confidence 999983 02799999999999999999999999999998 899999999999998876643333333322 4
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
++++++.|+||.+|++|+|+||+++ ++++.+.++.....++.+++.+.++..++... +++.+.+++++++++++.
T Consensus 203 ~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~ 277 (354)
T 3ly1_A 203 ENIILLKTFSKIHAMAGMRVGYAVA-HPTVIALMGRYVAGEKINFSGVDAALASMNDS----AFITYSKKSNDVSRQILL 277 (354)
T ss_dssp SSEEEEEESSSTTCCGGGCCEEEEC-CHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeChhhccChhhhheeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998 89999999888777899999999999999864 456778888999999999
Q ss_pred HHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHH
Q 019899 244 AGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVI 323 (334)
Q Consensus 244 ~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l 323 (334)
+.|+++++.+..+ .+.++|++++. +..++...|. ++||.+. |.+++ .++++|++++ +++++++++
T Consensus 278 ~~l~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~l~-~~gi~v~-g~~~~--~~~~iRis~~--~~~~i~~~~ 342 (354)
T 3ly1_A 278 KALEDLKLPYLPS-EGNFVFHQLVV--------PLKDYQTHMA-DAGVLIG-RAFPP--ADNWCRISLG--TPQEMQWVA 342 (354)
T ss_dssp HHHHHHTCCBCCC-CSSEEEEECSS--------CHHHHHHHHH-HTTEECC-CCCTT--CTTEEEEECC--CHHHHHHHH
T ss_pred HHHHHCCCeECCC-CceEEEEECCC--------CHHHHHHHHH-HCCEEEe-ecCCC--CCCEEEEEcC--CHHHHHHHH
Confidence 9999888887755 45568899875 2457778855 5899998 77554 4789999988 889999999
Q ss_pred HHHHHHHHHc
Q 019899 324 ERIQKVAETC 333 (334)
Q Consensus 324 ~~l~~~~~~~ 333 (334)
+.|++++++.
T Consensus 343 ~~l~~~l~~~ 352 (354)
T 3ly1_A 343 DTMREFRKKS 352 (354)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-42 Score=310.22 Aligned_cols=302 Identities=20% Similarity=0.369 Sum_probs=253.1
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
++.+++.+++++++|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.+|.++ + .+|+++++
T Consensus 80 ~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~-~--~~d~~~l~ 155 (397)
T 2zyj_A 80 RAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFR-LQGPRFLTVPAGE-E--GPDLDALE 155 (397)
T ss_dssp HHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-TTCCEEEEEEEET-T--EECHHHHH
T ss_pred HHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-HcCCEEEecCcCC-C--CCCHHHHH
Confidence 333433345678899999999999999999999999999999999999999988 8999999999743 2 48999999
Q ss_pred HHHHHHHHcCCceeEE-EEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC-
Q 019899 86 QAFNQARKRGVKVRGI-LICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK- 163 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i-~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (334)
+++++. ++++| ++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++..+.++..+.. .
T Consensus 156 ~~l~~~-----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-----~~ 225 (397)
T 2zyj_A 156 EVLKRE-----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAR-----EA 225 (397)
T ss_dssp HHHHHC-----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHH-----HH
T ss_pred HHHhhc-----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCc-----cc
Confidence 999862 67877 47899999999999999999999999999999999999999887665556666543 3
Q ss_pred --CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 164 --DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 164 --~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
++++++.|+||.++ +|+|+||+++ ++++.+.+...... ++.+++.+.++..+++...+ +++.+.++++++++
T Consensus 226 ~~~~~i~~~s~sK~~~-~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~ 301 (397)
T 2zyj_A 226 GYPGVIYLGSFSKVLS-PGLRVAFAVA-HPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKA 301 (397)
T ss_dssp TCCCEEEEEESTTTTC-GGGCCEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH--HHHHHHHHHHHHHH
T ss_pred CCCeEEEEeccccccc-ccceeEEEec-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHH
Confidence 68899999999999 9999999998 78888888765433 56789999999999987543 56788888999999
Q ss_pred HHHHHHHHhC---CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEEEEecCC
Q 019899 240 DSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFRCCFTSL 314 (334)
Q Consensus 240 ~~~~~~l~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iRi~~~~~ 314 (334)
+++.+.|++. |+++..+.+|+++|++++... +..++.+.|++ +||.+.||..|+.. .++++|++++..
T Consensus 302 ~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~g~~f~~~~~~~~~iRis~~~~ 374 (397)
T 2zyj_A 302 QAMLHALDREVPKEVRYTRPKGGMFVWMELPKGL------SAEGLFRRALE-ENVAFVPGGPFFANGGGENTLRLSYATL 374 (397)
T ss_dssp HHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTC------CHHHHHHHHHH-TTEEEEESGGGCTTSCCTTEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCC------CHHHHHHHHHH-CCCEEechHHhcCCCCCCCeEEEEcCCC
Confidence 9999999885 788877888999999997532 34678888666 59999999988643 368999999955
Q ss_pred CcccHHHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVAET 332 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~ 332 (334)
+++++++++++|++++++
T Consensus 375 ~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 375 DREGIAEGVRRLGRALKG 392 (397)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999998875
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=307.24 Aligned_cols=300 Identities=21% Similarity=0.273 Sum_probs=255.3
Q ss_pred hhhhhcCCC-CCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAV-SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~-~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.+ +++++++++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+++++++++.+|+++
T Consensus 68 l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~ 146 (375)
T 3op7_A 68 FKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPK-SLGAEVDLWQIEEENGWLPDLEK 146 (375)
T ss_dssp HHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHH-HTTCEEEEEEEEGGGTTEECHHH
T ss_pred HHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-HcCCEEEEEeccccCCCCCCHHH
Confidence 455555544 5788999999999999999999999999999999999999999988 89999999998666778899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++++ ++++|++++|+||||.++|.+++++|.++|++||+++|+||+|+.+.+. ........ .
T Consensus 147 l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~--~~~~~~~~-------~ 211 (375)
T 3op7_A 147 LRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL--DVPSIIEV-------Y 211 (375)
T ss_dssp HHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS--CCCCHHHH-------C
T ss_pred HHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc--CCCchhhh-------c
Confidence 9999975 7899999999999999999999999999999999999999999988775 22333322 5
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (334)
++++++.|+||.+|++|+|+||+++ ++++.+.++..... ++.+++.+.++..++.. .++++.+.+++++++++.
T Consensus 212 ~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~ 287 (375)
T 3op7_A 212 DKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAH---YQEILERNRHILEENLAI 287 (375)
T ss_dssp TTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHH
Confidence 7789999999999989999999998 99999999876554 45677888877777764 255667888888999999
Q ss_pred HHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHH
Q 019899 242 FVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIP 320 (334)
Q Consensus 242 ~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~ 320 (334)
+.+.|++. ++.+..+.++++.|+.++... +..+++..+++++||.+.||..|+. ++++|++++ .++++++
T Consensus 288 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~gi~v~~g~~~~~--~~~iRi~~~-~~~~~i~ 358 (375)
T 3op7_A 288 LDQWIEEEPLVSYIRPAVVSTSFVKIAVDM------PMEDFCLQLLQEHGVLLVPGNRFER--DGYVRLGFA-CEQETLI 358 (375)
T ss_dssp HHHHHHHCTTEEECCCSSSSCEEEEECCSS------CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEECCC-SCHHHHH
T ss_pred HHHHHhhCCCceEecCCCeEEEeEEcCCCC------CHHHHHHHHHHhCCEEEeChhhhCC--CCeEEEEec-CCHHHHH
Confidence 99999886 777778888888888887543 3468888887889999999998874 789999998 5568999
Q ss_pred HHHHHHHHHHHHc
Q 019899 321 LVIERIQKVAETC 333 (334)
Q Consensus 321 ~~l~~l~~~~~~~ 333 (334)
+++++|.++++++
T Consensus 359 ~~l~~l~~~l~~~ 371 (375)
T 3op7_A 359 KGLEKLSQFLRRF 371 (375)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999765
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=308.23 Aligned_cols=297 Identities=16% Similarity=0.209 Sum_probs=237.7
Q ss_pred hhhhhhhhcCCCCCCCCc--EEEecCcHHHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPSQ--IVLTAGATPAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--i~~~~g~~~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
++|+.++.. ..+++++ +++|+|+++|+.+++..+.+ + |+|++++|+|++|...++ ..|.+++.+|+.+++++
T Consensus 82 a~~~~~~~~--~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~ 157 (405)
T 3k7y_A 82 QNLIFGNNS--KYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIE-SRGFNLKYINFFDYNLI 157 (405)
T ss_dssp HHHHHCSSC--TTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHH-TTTCEEEEECCEETTTT
T ss_pred HHHHcCCCC--ccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHH-HcCCeEEEEeccccccC
Confidence 556644322 3445664 59999999999999999877 8 999999999999999999 99999999998545678
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC--Ccchhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE--EFVSMAE 154 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~~ 154 (334)
.+|++++++++++. .++++++++.| |||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++..
T Consensus 158 ~~d~~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~ 233 (405)
T 3k7y_A 158 DINYDLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRK 233 (405)
T ss_dssp EECHHHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred CcCHHHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHH
Confidence 99999999999852 24577777766 89999999999999999999999999999999999988542 2233444
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEee--cCHHHHHHHHH----h-hcc-cCCChHHHHHHHHhhCChHH---
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYS--YNESVLAAAKK----L-TRF-CSISAPTQRLLISMLSDTKF--- 223 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~--~~~~~~~~~~~----~-~~~-~~~~~~~~~~~~~~l~~~~~--- 223 (334)
+.. ..++++++.||||+++++|+|+||+++ +++++++.+.. . +.. .+.+...|.++..++...++
T Consensus 234 ~~~----~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 309 (405)
T 3k7y_A 234 FEE----KNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLN 309 (405)
T ss_dssp HHT----TTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHH
T ss_pred HHh----cCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHH
Confidence 433 157899999999999999999999853 47776665532 2 222 34567888888888877432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLK----QLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~----~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
..+++.+++++++++++.+.+.|+ ++| +++..+.+|||+|+.++. +++.+| +++||.+.|
T Consensus 310 ~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----------~~~~~L-~~~gV~v~p 377 (405)
T 3k7y_A 310 WIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----------KIAEHL-KTHHIYIIN 377 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----------GGTTTT-TTTTEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----------HHHHHH-HHCCEeecC
Confidence 234467778889999999999999 776 578889999999988763 334565 789999998
Q ss_pred CCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
|. |||++..+++++++++++|++++++
T Consensus 378 ~~----------Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 378 NG----------RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp TS----------EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred CC----------eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 52 9999878999999999999999875
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=306.36 Aligned_cols=293 Identities=17% Similarity=0.226 Sum_probs=248.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+++ +++++ +|++++
T Consensus 70 lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~v~~-~~~~~-~d~~~l 146 (365)
T 3get_A 70 LKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK-QCGAKCYKTQS-ITHNL-DEFKKL 146 (365)
T ss_dssp HHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-HHTCEEEECSS-SSCCH-HHHHHH
T ss_pred HHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHH-HcCCEEEEEec-CCCCC-CCHHHH
Confidence 3344444455788999999999999999999999999999999999999999988 89999999998 34567 999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccccc--CCCCcchhhhhhhccccC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIF--GNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~--~~~~~~~~~~~~~~~~~~ 162 (334)
++++++ ++++|++++|+||||.++|.+++.+++++| ++|+++|+|++|+.+.| .+....+.......
T Consensus 147 ~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~---- 215 (365)
T 3get_A 147 YETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKE---- 215 (365)
T ss_dssp HHHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHH----
T ss_pred HHHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhcc----
Confidence 999975 899999999999999999999999999988 57999999999998875 44333333333221
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
.++++++.|+||.+|++|+|+||+++ ++++.+.++.....++.+++.+.++..+++.. +++.+.+++++++++++
T Consensus 216 ~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l 290 (365)
T 3get_A 216 FDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAPFNVSNLALKAAVAAMDDD----EFTEKTLENNFSQMELY 290 (365)
T ss_dssp CTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999 99999999988888889999999999999864 45677888899999999
Q ss_pred HHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 243 VAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 243 ~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
.+.|+++|+++..+.+ .++|++++.. +..++...|. ++||.+.||..|+ ++++|++++ ++++++++
T Consensus 291 ~~~l~~~g~~~~~~~~-~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~g~~~~---~~~iRis~~--~~~~i~~l 356 (365)
T 3get_A 291 KEFAKKHNIKIIDSYT-NFITYFFDEK-------NSTDLSEKLL-KKGIIIRNLKSYG---LNAIRITIG--TSYENEKF 356 (365)
T ss_dssp HHHHHHTTCEECCCSS-SEEEEECSSS-------CHHHHHHHHH-TTTEECEECGGGT---CSEEEEECC--CHHHHHHH
T ss_pred HHHHHhCCCEECCCCC-eEEEEECCCC-------CHHHHHHHHH-HCCEEEEECccCC---CCEEEEEcC--CHHHHHHH
Confidence 9999998888766654 4588998764 2467888855 4799999999887 789999998 89999999
Q ss_pred HHHHHHHH
Q 019899 323 IERIQKVA 330 (334)
Q Consensus 323 l~~l~~~~ 330 (334)
++.|++++
T Consensus 357 ~~~l~~~l 364 (365)
T 3get_A 357 FTEFDKIL 364 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=304.97 Aligned_cols=292 Identities=24% Similarity=0.419 Sum_probs=246.2
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ +.+++++|++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.++ +|+
T Consensus 76 a~~~~~~~g--~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~v~--------~d~ 144 (370)
T 2z61_A 76 SELYKDKYK--ADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIR-FLGAKPVFCD--------FTV 144 (370)
T ss_dssp HHHHHHHSS--CCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-HTTCEEEEEC--------SSH
T ss_pred HHHHHHHhC--CCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-HcCCEEEEeC--------CCH
Confidence 556655555 56788999999999999999999999999999999999999999988 8999998887 588
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++ +++++++++|+||||.++|.+ |.++|+++|+++|+||+|+.+.+++. +.++..+..
T Consensus 145 ~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~---- 209 (370)
T 2z61_A 145 ESLEEALSD------KTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDE---- 209 (370)
T ss_dssp HHHHHHCCS------SEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCT----
T ss_pred HHHHHhccc------CceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccC----
Confidence 999998865 789999999999999999954 99999999999999999999888653 334444421
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
..++++++.|+||.+|++|+|+||+++ ++++.+.++..... ++.+++.+.++..+++.. ..+++.+.++++++++
T Consensus 210 ~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~ 286 (370)
T 2z61_A 210 NLEKTILINGFSKLYAMTGWRIGYVIS-NDEIIEAILKLQQNLFISAPTISQYAALKAFEKE--TEREINSMIKEFDRRR 286 (370)
T ss_dssp TCSSEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHH--HHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecChhccCCccceEEEEEE-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHH
Confidence 157899999999999989999999998 77888888765443 478888998888888641 1456677888999999
Q ss_pred HHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccH
Q 019899 240 DSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDI 319 (334)
Q Consensus 240 ~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l 319 (334)
+++.+.|++.|+++..+.+|+++|++++. +..++...|++++||.+.||..|+...++++|++++ .+++++
T Consensus 287 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~-~~~~~i 357 (370)
T 2z61_A 287 RLVLKYVKDFGWEVNNPIGAYYVFPNIGE--------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA-NSYENI 357 (370)
T ss_dssp HHHHHHHHHTTCBCCCCCBTTEECCBCSS--------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC-SCHHHH
T ss_pred HHHHHHHHHcCCeecCCCcceEEEEecCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-CCHHHH
Confidence 99999999888888888889999998875 235788887767899999999887544689999999 799999
Q ss_pred HHHHHHHHHHHH
Q 019899 320 PLVIERIQKVAE 331 (334)
Q Consensus 320 ~~~l~~l~~~~~ 331 (334)
++++++|+++++
T Consensus 358 ~~~~~~l~~~l~ 369 (370)
T 2z61_A 358 KEGLERIKEFLN 369 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=314.77 Aligned_cols=309 Identities=15% Similarity=0.150 Sum_probs=254.9
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCCC--eEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHGN--ALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd--~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
++++.+..+ +.+++++|++|+|+++++..++.+++ ++|| +|++++|+|.++...++ ..|.+++.++++ ++++
T Consensus 92 a~~~~~~~g--~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~-~~~~ 167 (437)
T 3g0t_A 92 SRFAKLFVN--IDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-ILGQKFESFDLF-EYRG 167 (437)
T ss_dssp HHHHHHHHC--CCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-HHTCCCEEEEGG-GGCT
T ss_pred HHHHHHhhC--CCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-HcCCEEEEEeec-CCCC
Confidence 556665555 66788999999999999999999998 9999 99999999999999998 899999999986 4667
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc----hh-
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV----SM- 152 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~----~~- 152 (334)
.+|++++++++++ .++++|++++|+||||.+++.+++++|+++|++||+++|+|++|+.+.+++.... ++
T Consensus 168 ~~d~~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 242 (437)
T 3g0t_A 168 EKLREKLESYLQT-----GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQ 242 (437)
T ss_dssp THHHHHHHHHHTT-----TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCC
T ss_pred ccCHHHHHHHHhc-----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchh
Confidence 8999999999943 2789999999999999999999999999999999999999999999887632211 01
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHH-H-----------------HHHhh--cccCCChHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLA-A-----------------AKKLT--RFCSISAPTQR 212 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~-~-----------------~~~~~--~~~~~~~~~~~ 212 (334)
..+.. ..++++++.|+||.+|++|+|+||+++ ++++.+ . +.... ..++.+++.+.
T Consensus 243 ~~~~~----~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3g0t_A 243 PSVAN----YTDNYILALSSSKAFSYAGQRIGVLMI-SGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQW 317 (437)
T ss_dssp CCGGG----TCSCEEEEEESTTTTSCGGGCCEEEEE-CHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHH
T ss_pred hccCC----CCCcEEEEEcCccCCCCccceeEEEEE-CHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHH
Confidence 22221 167889999999999999999999999 788877 6 65443 34678999999
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------CC-CceeEEeeecCCcCCCCChhhHHHHHHHH
Q 019899 213 LLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS------ES-SAGLYCWADMSGLIPSYSEKGELELWDKL 285 (334)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~------~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (334)
++..++...+..+.++.+.+++++++++++.+.|+++|+++. .+ .+++++|++++. . +..++...|
T Consensus 318 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~~L 390 (437)
T 3g0t_A 318 GMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKG-M------DSSKLIEKF 390 (437)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETT-C------CHHHHHHHH
T ss_pred HHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCC-C------CHHHHHHHH
Confidence 998888653211111577888999999999999999888877 34 789999999982 1 346788886
Q ss_pred HHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 286 LNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 286 l~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
++ +||.+.|+..|+...++++|++++..+++++++++++|++++++
T Consensus 391 ~~-~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 391 VR-YGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp HH-TTEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred HH-cCeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 65 79999999988765558899999966999999999999998864
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=308.15 Aligned_cols=304 Identities=22% Similarity=0.380 Sum_probs=252.3
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ +++++++|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.++.++++++.+ +
T Consensus 89 a~~~~~~~g--~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~-~ 164 (409)
T 2gb3_A 89 ASYYKRRQR--VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAK-IAGVKLIPVTRRMEEGFAI-P 164 (409)
T ss_dssp HHHHHHTSC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-HHTCEEEEEECCGGGTSCC-C
T ss_pred HHHHHHHhC--CCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-HcCCEEEEeccCCCCCCcc-H
Confidence 455555444 55778999999999999999999999999999999999999999888 8899999999854345555 8
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
++|++++++ +++++++++|+||||.++|.+++++|.++|+++|+++|+||+|+.+.+++. ..+. +.. .
T Consensus 165 ~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~-~~~~--~~~---~ 232 (409)
T 2gb3_A 165 QNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASA--LSI---E 232 (409)
T ss_dssp TTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCG--GGS---C
T ss_pred HHHHHhhCc------CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC-CCCc--ccc---C
Confidence 888888865 789999999999999999999999999999999999999999999887652 2332 111 1
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc-CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC-SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
.++++++.|+||.+|++|+|+||++++++++.+.++.....+ +.+++.+.++..+++.. .++++++++++.++++
T Consensus 233 -~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~ 308 (409)
T 2gb3_A 233 -SDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVE 308 (409)
T ss_dssp -CTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence 467899999999999899999999995548888887765555 78889999988888653 3456778888999999
Q ss_pred HHHHHHHhCCCcc-cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHh-----cCeEEcCCCCcCC---CCCCeEEEEe
Q 019899 241 SFVAGLKQLGIRC-SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNI-----AKINVTPGSACHC---IEPGWFRCCF 311 (334)
Q Consensus 241 ~~~~~l~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~~g~~~~~---~~~~~iRi~~ 311 (334)
++.+.|++.|+++ ..+.+++++|++++. .+..++...|+++ +||.+.||..|+. ..++++|+++
T Consensus 309 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~ 381 (409)
T 2gb3_A 309 TVLKKLEEHGLKRFTKPSGAFYITAELPV-------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIAC 381 (409)
T ss_dssp HHHHHHHHTTCCCBCCCSBSSEEEEECSS-------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEEC
T ss_pred HHHHHHHHcCceeeeCCCeeEEEEEEeCC-------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEe
Confidence 9999999888888 778889999999872 1346788887765 5999999988864 2367999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHc
Q 019899 312 TSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 312 ~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+ .+++++++++++|+++++++
T Consensus 382 ~-~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 382 V-LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp C-SCHHHHHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHHHh
Confidence 9 89999999999999998764
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=309.07 Aligned_cols=301 Identities=23% Similarity=0.415 Sum_probs=249.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC-CCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS-TDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~~~~~~ 83 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.++++. .+++.+|+++
T Consensus 66 l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~~~ 144 (381)
T 1v2d_A 66 LREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF-LAGAKARLVRLDLTPEGFRLDLSA 144 (381)
T ss_dssp HHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECEEETTEEECCHHH
T ss_pred HHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-HcCCEEEEEeCCCCCccCCcCHHH
Confidence 4444545566778899999999999999999999999999999999999999888 8999999999741 1346899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++++ ++++|++++|+||||.++|.+++++|+++|++||+++|+|++|+.+.+ +....++..+ . .
T Consensus 145 l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~-~-----~ 211 (381)
T 1v2d_A 145 LEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF-A-----P 211 (381)
T ss_dssp HHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH-C-----T
T ss_pred HHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh-c-----C
Confidence 9998864 789999999999999999999999999999999999999999999887 4444455544 2 6
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (334)
+.++++.|+||.++++|+|+||+++ ++++++.++.... .++.+++.+.++..++.... ..+++++.++++++++++
T Consensus 212 ~~~~~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 289 (381)
T 1v2d_A 212 ERTFTVGSAGKRLEATGYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALREGYRRRRDL 289 (381)
T ss_dssp TTEEEEEEHHHHTTCGGGCCEEEEC-CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEeechhhcCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHHH
Confidence 7899999999999989999999998 7788888775443 56788888888888876432 144567788899999999
Q ss_pred HHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC--CCCCeEEEEecCCCcccH
Q 019899 242 FVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC--IEPGWFRCCFTSLTHEDI 319 (334)
Q Consensus 242 ~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~~iRi~~~~~~~~~l 319 (334)
+.+.|++.|+++..+.+++++|++++.. + ...+++++||.+.||..|+. ..++++|++++. +++++
T Consensus 290 l~~~L~~~g~~~~~~~~~~~~~~~~~~~----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i 357 (381)
T 1v2d_A 290 LAGGLRAMGLRVYVPEGTYFLMAELPGW----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEEL 357 (381)
T ss_dssp HHHHHHHTTCCEECCSBSSEEEEECTTC----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHH
T ss_pred HHHHHHHCCCEecCCCcceEEEEecChH----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHH
Confidence 9999999899888888889999998752 1 44557779999999988864 246799999995 89999
Q ss_pred HHHHHHHHHHHHHc
Q 019899 320 PLVIERIQKVAETC 333 (334)
Q Consensus 320 ~~~l~~l~~~~~~~ 333 (334)
++++++|++++++.
T Consensus 358 ~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 358 HLALERLGRVVNSP 371 (381)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988654
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=314.86 Aligned_cols=292 Identities=18% Similarity=0.256 Sum_probs=245.3
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcE----------EEEEeCCCCCCccccHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVE----------LIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~----------v~~v~~~~~~~~~~~~~ 82 (334)
+++++++|++|+|+++++..+ ..++++||+|++++|+|.++...++ ..|.+ ++.+++++++++..+++
T Consensus 128 ~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (449)
T 3qgu_A 128 AGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSV-MMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLS 205 (449)
T ss_dssp TTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHH-HHTCSCCBCSSSBTTEEEEECCGGGTTCCCGG
T ss_pred CCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHH-HcCCcccccccccceeEEEecccccCCcCChh
Confidence 577889999999999999998 8888999999999999999999998 88988 99999865556666654
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++ .++++|++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++....++..+...
T Consensus 206 ~~-----------~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~---- 270 (449)
T 3qgu_A 206 KA-----------KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGA---- 270 (449)
T ss_dssp GC-----------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTG----
T ss_pred Hc-----------CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCC----
Confidence 32 278999999999999999999999999999999999999999999999876655566555331
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHH--------HHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLA--------AAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.++++++.|+||.+|++|+|+||+++ ++++++ .+... ..+++.+++.+.++..++.... .+++.+++
T Consensus 271 ~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~ 347 (449)
T 3qgu_A 271 DEVAIETCSFSKYAGFTGVRLGWTVV-PKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMI 347 (449)
T ss_dssp GGTEEEEEECSGGGTCTTCCCEEEEC-CTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH--HHHHHHHH
T ss_pred CCcEEEEecchhhcCCccceeEEEec-CHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC--HHHHHHHH
Confidence 57789999999999999999999998 555443 33332 2334678899999888887532 35678888
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT 312 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~ 312 (334)
++++++++++.+.|++.|+++..+.+++++|++++ .. +..+++..|++++||.+.||..|+...++++||++.
T Consensus 348 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~ 420 (449)
T 3qgu_A 348 KFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFP-GK------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAF 420 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEESSSSSEEEEECT-TS------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHCCCeeeCCCCeeEEEEECC-CC------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEec
Confidence 99999999999999999999888888999999998 22 346888898887899999999998767899999987
Q ss_pred CCCcccHHHHHHHHHHHHHH
Q 019899 313 SLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 313 ~~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++++++++++|++++++
T Consensus 421 -~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 421 -GSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp -SCHHHHHHHHHHHHHHHC-
T ss_pred -CCHHHHHHHHHHHHHHHHh
Confidence 5999999999999999875
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=297.42 Aligned_cols=288 Identities=18% Similarity=0.281 Sum_probs=245.7
Q ss_pred hhcCCCCC-CCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHH
Q 019899 8 VLGQAVSF-DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQ 86 (334)
Q Consensus 8 ~~~~~~~~-~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~ 86 (334)
.+++.+++ ++++|++|+|+++++..++.+++++||+|++++|+|.++...++ ..|.+++.++++ .++.+|++++++
T Consensus 75 ~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~l~~ 151 (367)
T 3euc_A 75 KLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQ-FAGLEFVGVPLR--ADFTLDRGAMLA 151 (367)
T ss_dssp HHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHH-TTTCEEEEEECC--TTSCCCHHHHHH
T ss_pred HHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHH-HcCCeEEEecCC--CCCCCCHHHHHH
Confidence 33333445 67899999999999999999999999999999999999999998 899999999984 467899999999
Q ss_pred HHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 87 AFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK--NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 87 ~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++. ++++|++++|+||||.+++.+++++|+++|++| |+++|+|++|+.+...+ ... .+.. .+
T Consensus 152 ~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~--~~~--~~~~-----~~ 217 (367)
T 3euc_A 152 AMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES--WMS--RLTD-----FG 217 (367)
T ss_dssp HHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC--SGG--GGGT-----CT
T ss_pred Hhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc--hHH--HHhh-----CC
Confidence 99874 789999999999999999999999999999999 99999999999866432 222 1221 67
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.|+||. +++|+|+||+++ ++++.+.++.....++.+++.+.++..+++. .+++.+.+++++++++++.+
T Consensus 218 ~~i~~~s~sK~-~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~ 291 (367)
T 3euc_A 218 NLLVMRTVSKL-GLAGIRLGYVAG-DPQWLEQLDKVRPPYNVNVLTEATALFALEH----VAVLDEQAAQLRAERSRVAE 291 (367)
T ss_dssp TEEEEEECCCT-TSCSCCEEEEEE-CHHHHHHHGGGCCSSCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecchhh-cccccCceeeee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHH
Confidence 88999999999 889999999999 8999999988877888999999999999987 34567778889999999999
Q ss_pred HHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHH
Q 019899 245 GLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVI 323 (334)
Q Consensus 245 ~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l 323 (334)
.|+++ |+++. +..+.++|++++ +..++... ++++||.+.||..|+...++++|++++ +++++++++
T Consensus 292 ~l~~~~g~~~~-~~~~~~~~~~~~---------~~~~l~~~-l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~ 358 (367)
T 3euc_A 292 GMAAHGGVTVF-PSAANFLLARVP---------DAAQTFDR-LLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFL 358 (367)
T ss_dssp HHHTSTTCEEC-CCSSSEEEEECS---------CHHHHHHH-HHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHH
T ss_pred HHHhCCCcEEC-CCCCeEEEEECC---------CHHHHHHH-HHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHH
Confidence 99988 88854 456677888887 13567777 566899999999887666789999998 899999999
Q ss_pred HHHHHHHH
Q 019899 324 ERIQKVAE 331 (334)
Q Consensus 324 ~~l~~~~~ 331 (334)
+.|+++++
T Consensus 359 ~~l~~~l~ 366 (367)
T 3euc_A 359 EAFAASLQ 366 (367)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99998864
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=300.82 Aligned_cols=291 Identities=17% Similarity=0.256 Sum_probs=238.9
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCce
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKV 98 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 98 (334)
+|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.+|+.+++ +.+|++++++++++.... ++
T Consensus 104 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~--~~ 179 (418)
T 3rq1_A 104 RSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICS-DTGRTLVTYSLFDEH-NNFNHEAFQNRVNELAAK--QT 179 (418)
T ss_dssp EEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHH-HTTCEEEEECSBCTT-SSBCHHHHHHHHHHHHHH--CS
T ss_pred cEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHH-HcCCEEEEEeeeCCC-CCcCHHHHHHHHHHhhcc--CC
Confidence 99999999999999999999999999999999999999998 899999999985433 689999999999863211 34
Q ss_pred e-EEEEeCC-CCCcccCCCHHHHHHHHHHHH------hcCcEEEEeccccccccCCCCcchhhhhhhccccCCCc--EEE
Q 019899 99 R-GILICNP-ANPVGNIIPRETLYELLDFAR------EKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR--VHI 168 (334)
Q Consensus 99 ~-~i~~~~p-~nptG~~~~~~~l~~i~~~~~------~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 168 (334)
+ ++++++| +||||.+++.+++++|+++|+ +||+++|+||+|.++.+.+....++..... ++ .++ +++
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~--~~-~~~~~~i~ 256 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFS--HL-PKEILTCV 256 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGT--TC-CTTEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHH--hc-CCCceEEE
Confidence 4 7889999 999999999999999999999 899999999999998876433333322221 11 233 588
Q ss_pred EecccccCCCCCceEEEEee--cCHHHHHHHHHhhc------ccCCChHHHHHHHHhhCChHHH---HHHHHHHHHHHHH
Q 019899 169 IYGLSKDLSLPGFRTGVIYS--YNESVLAAAKKLTR------FCSISAPTQRLLISMLSDTKFI---QEYLETNKRRIKK 237 (334)
Q Consensus 169 ~~s~sK~~~~~g~r~g~i~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~ 237 (334)
+.|+||.+|++|+|+||+++ +++++++.+..... +.+.+...+.++..++...++. .+...++++++++
T Consensus 257 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 336 (418)
T 3rq1_A 257 CYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRD 336 (418)
T ss_dssp EEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999987 47888888876432 2357889999999999886422 3344567788999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|+++|+++..+.+++++|++++ +..++... ++++||.+.||. +++|++++..+++
T Consensus 337 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~~-l~~~gi~v~~g~-------~~iRis~~~~~~~ 399 (418)
T 3rq1_A 337 RADIFKQEAAQVGLPMLPYRGGFFITIPTD---------SANAICEE-LKKEHIYVIALA-------NGIRIAACGIPKC 399 (418)
T ss_dssp HHHHHHHHHHHHTCCCCCCCSSSEEEEECT---------THHHHHHH-HHHTTEECEECS-------SEEEEEGGGSCHH
T ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEcCCC---------CHHHHHHH-HHhCCEEEecCC-------CCeEEEEecCCHH
Confidence 999999999988999989999999998774 23577776 567899999973 5799998866999
Q ss_pred cHHHHHHHHHHHHHHc
Q 019899 318 DIPLVIERIQKVAETC 333 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~ 333 (334)
++++++++|++++++.
T Consensus 400 ~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 400 QMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-41 Score=297.90 Aligned_cols=291 Identities=18% Similarity=0.241 Sum_probs=246.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.+++++||+|+++.|+|.++...++ ..|.+++.++.++ ++.+|++++
T Consensus 72 lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~--~~~~d~~~l 148 (363)
T 3ffh_A 72 LRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNAL-IEGAEVREIPLLQ--DGEHDLEGM 148 (363)
T ss_dssp HHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHH-HHTCEEEEEECCT--TSCCCHHHH
T ss_pred HHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHH-HcCCEEEEecCCC--CCCcCHHHH
Confidence 3444444455788999999999999999999999999999999999999999988 8999999999843 578999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++++ +++++++++|+||||.++|.+++.++++.|++ |+++|+|++|+++.+ +........... .+
T Consensus 149 ~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~-----~~ 215 (363)
T 3ffh_A 149 LNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRT-----YK 215 (363)
T ss_dssp HHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGT-----CT
T ss_pred HHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhc-----CC
Confidence 999975 79999999999999999998888888888877 999999999998877 433222222222 68
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.|+||.+|++|+|+||+++ ++++.+.++.....++.+++.+.++..++... +++.+.+++++++++++.+
T Consensus 216 ~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~ 290 (363)
T 3ffh_A 216 NLIITRTFSKIYGLASARVGYGIA-DKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQ----AFIGECRTSNANGIKQYEA 290 (363)
T ss_dssp TEEEEEESSSTTCCSSCCCEEEEE-CHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeechhhhcCchhceeeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999 99999999988888899999999999998753 4567788889999999999
Q ss_pred HHHh-CCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHH
Q 019899 245 GLKQ-LGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVI 323 (334)
Q Consensus 245 ~l~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l 323 (334)
.|++ .|+++..+. +.++|++++. +..++...|. ++||.+.||..|+. ++++|++++ +++++++++
T Consensus 291 ~l~~~~g~~~~~~~-~~~~~~~~~~--------~~~~~~~~l~-~~gi~v~~g~~~~~--~~~iRis~~--~~~~i~~~~ 356 (363)
T 3ffh_A 291 FAKRFEKVKLYPAN-GNFVLIDLGI--------EAGTIFSYLE-KNGYITRSGAALGF--PTAVRITIG--KEEDNSAVI 356 (363)
T ss_dssp HHHHCTTCEECCCC-SSEEEEECSS--------CHHHHHHHHH-HTTEECEETTTTTC--TTEEEEECC--CHHHHHHHH
T ss_pred HHhhCCCceECCCC-CeEEEEECCC--------CHHHHHHHHH-HCCeEEEeCccCCC--CCeEEEECC--CHHHHHHHH
Confidence 9999 688876554 5568898874 2457888855 57999999998875 789999998 899999999
Q ss_pred HHHHHHH
Q 019899 324 ERIQKVA 330 (334)
Q Consensus 324 ~~l~~~~ 330 (334)
+.|++++
T Consensus 357 ~~l~~~l 363 (363)
T 3ffh_A 357 ALLEKLL 363 (363)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998763
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=297.30 Aligned_cols=289 Identities=23% Similarity=0.347 Sum_probs=239.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCC-CeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHG-NALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~g-d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.+++++++|++|+|+++++..++.+++++| |+|+++.|+|+++...++ ..|.+++.+|++ +++.+|+++
T Consensus 63 lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~ 139 (356)
T 1fg7_A 63 VIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-TIGVECRTVPTL--DNWQLDLQG 139 (356)
T ss_dssp HHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-HHTCEEEECCCC--TTSCCCHHH
T ss_pred HHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHH-HcCCEEEEeeCC--CCCCCCHHH
Confidence 4445555556788999999999999999999999999 999999999999999988 889999999874 456789999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
++++++ +++++++++|+||||.++|.+++++++++|+ +|+++|+||+|+++.. ..++..+.. ..
T Consensus 140 l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~----~~~~~~~~~----~~ 203 (356)
T 1fg7_A 140 ISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP----QASLAGWLA----EY 203 (356)
T ss_dssp HHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG----GGCSGGGTT----TC
T ss_pred HHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC----CCcHHHHHh----hC
Confidence 988774 5789999999999999999999999999999 9999999999998652 122223222 15
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
++++++.|+||.+|++|+|+||+++ ++++++.++.....++.|++.+.++.+++...++ +++.+.+++++++++++.
T Consensus 204 ~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~ 280 (356)
T 1fg7_A 204 PHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLI 280 (356)
T ss_dssp TTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecchHhhcCchhhhEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999 8899999988877788999999999999875432 246788889999999999
Q ss_pred HHHHhCC-CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC-CCCcCCCCCCeEEEEecCCCcccHHH
Q 019899 244 AGLKQLG-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP-GSACHCIEPGWFRCCFTSLTHEDIPL 321 (334)
Q Consensus 244 ~~l~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~~~~~~~~~iRi~~~~~~~~~l~~ 321 (334)
+.|++++ +....+.+++++|++++ +..++...| .++||.+.| |..|+. ++++|++++ +++++++
T Consensus 281 ~~L~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~--~~~e~~~ 346 (356)
T 1fg7_A 281 AALKEIPCVEQVFDSETNYILARFK---------ASSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG--TREESQR 346 (356)
T ss_dssp HHHHHSTTEEEECCCSSSEEEEEET---------THHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC--CHHHHHH
T ss_pred HHHHhCCCceEECCCCCeEEEEECC---------CHHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC--CHHHHHH
Confidence 9999885 22334556778899986 235788885 668999999 887764 569999998 6889999
Q ss_pred HHHHHHHH
Q 019899 322 VIERIQKV 329 (334)
Q Consensus 322 ~l~~l~~~ 329 (334)
++++|+++
T Consensus 347 ~~~~l~~~ 354 (356)
T 1fg7_A 347 VIDALRAE 354 (356)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99988753
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=304.89 Aligned_cols=308 Identities=13% Similarity=0.160 Sum_probs=247.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHH--HHHHHHhcC--C----------CCeEEecCCCCCChhhhhhhccCcEEEEEe
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAV--EILCFCLAD--H----------GNALLVPSPYYPGFDRDIRFRTGVELIPVH 70 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~--~~~~~~l~~--~----------gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~ 70 (334)
+++.+++.+++++++|++|+|+++++ ++++.++++ + ||+|++++|+|.++...++ ..|.+++.+|
T Consensus 83 lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~-~~g~~~~~v~ 161 (427)
T 3ppl_A 83 IRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITE-RFGFEMISVP 161 (427)
T ss_dssp HHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-HTTCEEEEEE
T ss_pred HHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHH-HcCCEEEEeC
Confidence 34444444567889999999999999 588888876 5 8999999999999999998 8999999999
Q ss_pred CCCCCCccccHHHHHHHHHHHHHcCCceeEEEEe-CCCCCcccCCCHHHHHHHHHHH-HhcCcEEEEeccccccccCCCC
Q 019899 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILIC-NPANPVGNIIPRETLYELLDFA-REKNIHVISDEIYGGSIFGNEE 148 (334)
Q Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~-~p~nptG~~~~~~~l~~i~~~~-~~~~~~vi~D~~~~~~~~~~~~ 148 (334)
+++ .++|+++|++++++ .++++|+++ +|+||||.++|.+++++|+++| +++|++||+||+|+.+.|.+..
T Consensus 162 ~~~---~g~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~ 233 (427)
T 3ppl_A 162 MNE---DGPDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEF 233 (427)
T ss_dssp EET---TEECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred CCC---CCCCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCC
Confidence 853 24999999999853 278877765 6799999999999999999999 9999999999999998776543
Q ss_pred --cchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHH
Q 019899 149 --FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFI 224 (334)
Q Consensus 149 --~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 224 (334)
..++..+....+ ..++++++.|+||. +++|+|+||+++ ++++++.+..... .++.+++.|.++..++...+.+
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~i~~~S~SK~-~~~G~r~G~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 310 (427)
T 3ppl_A 234 PEVIDIVGLGEAAG-NPNRFWAFTSTSKI-TLAGAGVSFFLT-SAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGV 310 (427)
T ss_dssp CCCCCHHHHHHHTT-CTTSEEEEEESTTT-SCTTSSCEEEEC-CHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH
T ss_pred CCccchhhhhhccC-CCCcEEEEechhhc-cCcCccEEEEEc-CHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhH
Confidence 335555421001 16889999999999 569999999998 7888888876543 4678899999999999884444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----C-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC-CCC
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQ----L-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP-GSA 298 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~----~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~ 298 (334)
.+++.+.++.++++++.+.+.|.+ . ++.+..+.+|+++|++++.. +..++... ++++||.+.| |..
T Consensus 311 ~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------~~~~~~~~-l~~~gv~v~~~g~~ 382 (427)
T 3ppl_A 311 RAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG-------TASRVAEL-AKEAGIALTGAGSS 382 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT-------CHHHHHHH-HHHTTEECCCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc-------hHHHHHHH-HHHCCCEEecCcCc
Confidence 677788888888888888887755 2 46777888999999999863 23566666 5668999999 556
Q ss_pred cCC---CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 299 CHC---IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 ~~~---~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
|+. ..++++|++++..+++++++++++|++++++
T Consensus 383 ~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 383 YPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLL 419 (427)
T ss_dssp SGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 653 2468999999855889999999999999865
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=301.18 Aligned_cols=308 Identities=13% Similarity=0.170 Sum_probs=242.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHH--HHHHHHhcCC------------CCeEEecCCCCCChhhhhhhccCcEEEEEe
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAV--EILCFCLADH------------GNALLVPSPYYPGFDRDIRFRTGVELIPVH 70 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~--~~~~~~l~~~------------gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~ 70 (334)
+++.+++.+++++++|++|+|+++++ .+++..+..+ +|+|++++|+|+++...++ ..|.+++.+|
T Consensus 81 lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~-~~g~~~~~v~ 159 (422)
T 3d6k_A 81 IRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE-HFGFEMINVP 159 (422)
T ss_dssp HHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-HHTCEEEEEE
T ss_pred HHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHH-HcCCEEEecC
Confidence 44444444567889999999999997 6777777655 3479999999999999998 8899999999
Q ss_pred CCCCCCccccHHHHHHHHHHHHHcCCceeEEE-EeCCCCCcccCCCHHHHHHHHHHHH-hcCcEEEEeccccc--cccCC
Q 019899 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGIL-ICNPANPVGNIIPRETLYELLDFAR-EKNIHVISDEIYGG--SIFGN 146 (334)
Q Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~-~~~p~nptG~~~~~~~l~~i~~~~~-~~~~~vi~D~~~~~--~~~~~ 146 (334)
+++ + ++|++++++++++. ++++|+ +++|+||||.++|.+++++|+++|+ ++|++||+||+|+. +.+++
T Consensus 160 ~~~-~--g~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~ 231 (422)
T 3d6k_A 160 MTD-E--GPDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF 231 (422)
T ss_dssp EET-T--EECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred CCC-C--CCCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC
Confidence 843 2 49999999998642 688888 6889999999999999999999999 99999999999986 44433
Q ss_pred CCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHH
Q 019899 147 EEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFI 224 (334)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~ 224 (334)
..+.++..+....+ ..++++++.||||. +++|+|+||+++ ++++++.+...... ++.+++.|.++..+++....+
T Consensus 232 ~~~~~~~~~~~~~~-~~~~~i~~~S~SK~-~~~GlriG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 308 (422)
T 3d6k_A 232 PIVHNVIEFAQAAG-NPNRFWFMSSTSKI-THAGSGVSFFAS-SKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGL 308 (422)
T ss_dssp CCCCCHHHHHHHTT-CTTCEEEEEESTTT-SCTTSSCEEEEC-CHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH
T ss_pred CCCcChhhHhhccC-CCCcEEEEcChhhh-cCcccceEEEEe-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchH
Confidence 33445533310001 16789999999998 569999999998 78898888776543 568999999999999873334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CC-CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC-CCC
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQ----LG-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP-GSA 298 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~----~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~ 298 (334)
.+++.+.++.++++++.+.+.|.+ .+ +.+..|.+|+|+|++++.. +..++.. +++++||.+.| |..
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------~~~~~~~-~l~~~gV~v~~~g~~ 380 (422)
T 3d6k_A 309 KAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-------TASRVVE-LAKEAGIALTGAGSS 380 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-------CHHHHHH-HHHHTTEECCCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-------CHHHHHH-HHHHCCeEEEcCccc
Confidence 667788888888888888888765 33 5667788999999999853 2334555 47779999999 555
Q ss_pred cCCC---CCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 299 CHCI---EPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 ~~~~---~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
|+.. .++++|++++..+++++++++++|++++++
T Consensus 381 f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 381 FPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp SGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 6421 357999999866899999999999999875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=293.32 Aligned_cols=295 Identities=19% Similarity=0.309 Sum_probs=236.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.++ +||+|+++.|+|+++...++ ..|.+++.+|..+++++.+ ++++
T Consensus 64 l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~-l~~~ 139 (364)
T 1lc5_A 64 LHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALA-QSGCEIRRWSLREADGWQL-TDAI 139 (364)
T ss_dssp HHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHH-HTTCEEEEEECCGGGTTCC-CTTH
T ss_pred HHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHH-HcCCeEEEEeCCcccccch-hHHH
Confidence 344444445677889999999999999999998 67999999999999999988 8899999999854334333 4545
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
.+.++ .+++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++..... ... ..+
T Consensus 140 ~~~~~------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~---~~~----~~~ 206 (364)
T 1lc5_A 140 LEALT------PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIP---ALK----DNP 206 (364)
T ss_dssp HHHCC------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG---GCT----TCT
T ss_pred HHhcc------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhh---Hhc----cCC
Confidence 54443 26888999999999999999999999999999999999999999988775322222 111 157
Q ss_pred cEEEEecccccCCCCCceEEEEe-ecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIY-SYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
+++++.|+||.+|++|+|+||++ + ++++.+.++.....++.|++.+.++..+++.. +++.+.+++++++++++.
T Consensus 207 ~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~ 281 (364)
T 1lc5_A 207 HIWVLRSLTKFYAIPGLRLGYLVNS-DDAAMARMRRQQMPWSVNALAALAGEVALQDS----AWQQATWHWLREEGARFY 281 (364)
T ss_dssp TEEEEEESTTTTTCTTTCCEEEECC-CHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCH----HHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECchhhcCCccceEEEEEC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHH
Confidence 88999999999998999999999 7 89999999887777889999999999999873 356778888999999999
Q ss_pred HHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 244 AGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 244 ~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
+.|+++ ++++..+ .|.++|++++.. ..++...|+ ++||.+.||..|+...++++|++++ ++++++++
T Consensus 282 ~~L~~~~~~~~~~~-~g~~~~~~~~~~--------~~~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l 349 (364)
T 1lc5_A 282 QALCQLPLLTVYPG-RANYLLLRCERE--------DIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERL 349 (364)
T ss_dssp HHHHTSTTEEECCC-SSSEEEEEESCT--------TCCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHH
T ss_pred HHHhcCCCCEECCC-CCeEEEEECCCc--------HHHHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHH
Confidence 999987 7776654 456678888742 236777755 4799999999886545689999987 68889999
Q ss_pred HHHHHHHHHHc
Q 019899 323 IERIQKVAETC 333 (334)
Q Consensus 323 l~~l~~~~~~~ 333 (334)
++.|+++++++
T Consensus 350 ~~~l~~~~~~~ 360 (364)
T 1lc5_A 350 LAALRNVLTGI 360 (364)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHhhcc
Confidence 99999887654
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=300.81 Aligned_cols=286 Identities=16% Similarity=0.218 Sum_probs=234.7
Q ss_pred CCC--cEEEecCcHHHHHHH--HHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHH
Q 019899 16 DPS--QIVLTAGATPAVEIL--CFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQA 91 (334)
Q Consensus 16 ~~~--~i~~~~g~~~~~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~ 91 (334)
+++ +|++|+|+++++..+ +.+++++||+|++++|+|.++...++ ..|.+++.+|+.+++++.+|++.+++++++.
T Consensus 114 ~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 192 (420)
T 4f4e_A 114 AAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFD-MAGFEVVAYPYYDAKTNGVNFDGMLAALNGY 192 (420)
T ss_dssp HTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-HTTCCEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred ccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHH-HcCCeEEEeeeeccccCccCHHHHHHHHHhC
Confidence 577 899999999999999 45668999999999999999999998 8999999999854567889999999999731
Q ss_pred HHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC-CcchhhhhhhccccCCCcEEEEe
Q 019899 92 RKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAEILEAEEVDKDRVHIIY 170 (334)
Q Consensus 92 ~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (334)
..+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+.. ..++++++.
T Consensus 193 ---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~----~~~~~i~~~ 265 (420)
T 4f4e_A 193 ---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA----ANLNVFVSS 265 (420)
T ss_dssp ---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH----TTCCEEEEE
T ss_pred ---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh----cCCCEEEEE
Confidence 12678899999999999999999999999999999999999999999998642 3345554443 268899999
Q ss_pred cccccCCCCCceEEEEee--cCHHHHHHH----HHh--hcccCCChHHHHHHHHhhCChHH---HHHHHHHHHHHHHHHH
Q 019899 171 GLSKDLSLPGFRTGVIYS--YNESVLAAA----KKL--TRFCSISAPTQRLLISMLSDTKF---IQEYLETNKRRIKKLY 239 (334)
Q Consensus 171 s~sK~~~~~g~r~g~i~~--~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 239 (334)
|+||.+|++|+|+||+++ +++++++.+ +.. ....+.+...+.++..++..... .++++.++++++++++
T Consensus 266 S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 345 (420)
T 4f4e_A 266 SFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMR 345 (420)
T ss_dssp ECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999863 466665543 222 12345678888888888877532 2456788999999999
Q ss_pred HHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 240 DSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 240 ~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+.+.+.|++. ++.+..+.+|+++|++++. +.+..+++++||.+.|+. |++++..+
T Consensus 346 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gI~v~~~~----------Ris~~~~~ 404 (420)
T 4f4e_A 346 NGLVERLKAAGIERDFSFINAQRGMFSYSGLTS-----------AQVDRLREEFGIYAVSTG----------RICVAALN 404 (420)
T ss_dssp HHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTTS----------EEEGGGCC
T ss_pred HHHHHHHHhcCCCCCceeECCCccEEEEeCCCH-----------HHHHHHHHhCCEEecCCC----------eEEEecCC
Confidence 9999999987 6788888899999987742 445666777999998842 99998668
Q ss_pred cccHHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKVA 330 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~ 330 (334)
++++++++++|++++
T Consensus 405 ~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 405 TRNLDVVANAIAAVL 419 (420)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999999886
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=311.14 Aligned_cols=299 Identities=18% Similarity=0.325 Sum_probs=240.5
Q ss_pred CCcEEEecCcHHHHHHHHHH-----hcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC--CCCccccHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFC-----LADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS--TDNFAFSITALDQAFN 89 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~-----l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~--~~~~~~~~~~l~~~l~ 89 (334)
+++|++|+|+++++..++.+ ++++||+|+++.|+|.++...+. ..|.+++.++++. ++++.+|+++|+++++
T Consensus 164 ~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~ 242 (533)
T 3f6t_A 164 QTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE-LKDYELVEVDLHSYEKNDWEIEPNEIEKLKD 242 (533)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG-GGGSEEEEECCCEETTTTSEECHHHHHHHSC
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH-HcCCeEEEEEecCCcccCCCCCHHHHHHHhC
Confidence 46999999999999999998 78999999999999999999998 8899999999864 5668899999999886
Q ss_pred HHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHH-hcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEE
Q 019899 90 QARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAR-EKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 90 ~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~-~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (334)
+ ++++|++++|+||||.++|.+++++|+++|+ +||+++|+||+|+.+.++. .++.... .+++++
T Consensus 243 ~------~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~---~~~~~~~------~~~~i~ 307 (533)
T 3f6t_A 243 P------SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF---KSIYSVV------PYNTML 307 (533)
T ss_dssp T------TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC---CCHHHHS------GGGEEE
T ss_pred C------CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc---cCHhhcC------CCCEEE
Confidence 5 8999999999999999999999999999999 6899999999999887642 3333332 478899
Q ss_pred EecccccCCCCCceEEEEeecCHHHHHHHH------------------------------------Hh--hcccCCChHH
Q 019899 169 IYGLSKDLSLPGFRTGVIYSYNESVLAAAK------------------------------------KL--TRFCSISAPT 210 (334)
Q Consensus 169 ~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~------------------------------------~~--~~~~~~~~~~ 210 (334)
+.||||.+|++|+|+||++++++.+.+.+. .. ....+.+++.
T Consensus 308 ~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~ 387 (533)
T 3f6t_A 308 VYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQ 387 (533)
T ss_dssp EEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHH
T ss_pred EecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHH
Confidence 999999999999999999996553333321 11 1224567778
Q ss_pred HHHH----HHhhCC--h-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCC-C--------
Q 019899 211 QRLL----ISMLSD--T-KFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSY-S-------- 274 (334)
Q Consensus 211 ~~~~----~~~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~-~-------- 274 (334)
|.++ ...+.. + +...+++.+++++++++++.+.+.|. .++.+..+.+++|+|++++...... .
T Consensus 388 q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~ 466 (533)
T 3f6t_A 388 QIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLT 466 (533)
T ss_dssp HHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhh
Confidence 8773 344431 0 11145678888999999999999998 7888888999999999987421000 0
Q ss_pred -hhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 275 -EKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 275 -~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++.+++..+++++||.+.||+.|+. .++++|++++..+++++++++++|+++++++
T Consensus 467 ~~~~~~~~~~~ll~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 467 NNFEQVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp HHCCHHHHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 013457888888889999999999986 4679999998779999999999999998764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=298.40 Aligned_cols=298 Identities=17% Similarity=0.235 Sum_probs=235.9
Q ss_pred hhhhhhhhcCCCCCCCCcEEE--ecCcHHHHHHHHHHhc---CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCC
Q 019899 2 AGFMSQVLGQAVSFDPSQIVL--TAGATPAVEILCFCLA---DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDN 76 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~--~~g~~~~~~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~ 76 (334)
++|+.+..+ +.+++++|++ |+|+++++..++..+. ++||+|++++|+|.++...++ ..|.+++.+|+.++++
T Consensus 81 a~~~~~~~~--~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~ 157 (401)
T 7aat_A 81 AELALGENS--EAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR-DAGLQLQAYRYYDPKT 157 (401)
T ss_dssp HHHHHCTTC--HHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH-HTTCEEEEEECEETTT
T ss_pred HHHhcCCCc--cccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHH-HcCCeeEeeeeecccc
Confidence 344443333 3356889987 9999999998887664 899999999999999999998 8999999999865557
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC--Ccchhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE--EFVSMAE 154 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~~ 154 (334)
+.+|++.+++.+++. ..+++++++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.+++. ...++..
T Consensus 158 ~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 234 (401)
T 7aat_A 158 CSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRH 234 (401)
T ss_dssp TEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred CccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHH
Confidence 899999998888641 23688999999999999999999999999999999999999999999887543 1223333
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEee--cCHH----HHHHHHHhhc--ccCCChHHHHHHHHhhCChHHH--
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYS--YNES----VLAAAKKLTR--FCSISAPTQRLLISMLSDTKFI-- 224 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~--~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~-- 224 (334)
+.. ..++++++.|+||.+|++|+|+||+++ .+++ +.+.++.... ..+.+...+.+++.++.+.++.
T Consensus 235 ~~~----~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (401)
T 7aat_A 235 FIE----QGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKE 310 (401)
T ss_dssp HHH----TTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHH
T ss_pred HHh----cCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHH
Confidence 322 167889999999999999999999886 3555 4444444332 2355667777777777765331
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 225 -QEYLETNKRRIKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
.+++.+.+++++++++++.+.|++++ +++..+.+++++|++++ .+....+++++||.+.|+
T Consensus 311 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ll~~~gi~v~~~--- 376 (401)
T 7aat_A 311 WLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------PEQVERLTKEFSIYMTKD--- 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC-----------HHHHHHHHHhCCEeccCC---
Confidence 45567888999999999999999875 66677889999998664 255677788899999764
Q ss_pred CCCCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 300 HCIEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 300 ~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
+|++++..++++++++++.|++++
T Consensus 377 -------~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 377 -------GRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp -------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred -------CeEEeccCChhhHHHHHHHHHHHh
Confidence 599998778888999999999876
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=303.21 Aligned_cols=291 Identities=18% Similarity=0.275 Sum_probs=237.8
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccC------------cEEEEEeCCCCCCcccc
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTG------------VELIPVHCRSTDNFAFS 80 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~ 80 (334)
+++++++|++|+|+++++..+ ..++++||+|++++|+|+++...++ ..| .+++.+++++++++..+
T Consensus 115 ~~~~~~~i~~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (432)
T 3ei9_A 115 LGIGDDDVFVSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSV-IMGQTGQFNTDVQKYGNIEYMRCTPENGFFPD 192 (432)
T ss_dssp TTCCGGGEEEESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHH-HHTCSCCEETTTTEETTCEEEECCGGGTTSCC
T ss_pred CCCCcceEEECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHH-HcCCcccccccccccCceEEeccCcccCCcCC
Confidence 577889999999999999975 7778899999999999999998887 666 36788887654455555
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++. ..+++++++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++. ..++..+...
T Consensus 193 l~~-----------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~-- 258 (432)
T 3ei9_A 193 LST-----------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFEIPGA-- 258 (432)
T ss_dssp GGG-----------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC-CSSGGGSTTG--
T ss_pred hhh-----------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC-CCChhhcCCC--
Confidence 443 13789999999999999999999999999999999999999999999887643 2344433221
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHH--------HHHHHHhh--cccCCChHHHHHHHHhhCChHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV--------LAAAKKLT--RFCSISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
.++++++.|+||.+|++|+|+||+++ ++++ ++.+.... ..++.+++.+.++..++.... .+++.+
T Consensus 259 --~~~~i~~~S~SK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~ 333 (432)
T 3ei9_A 259 --EEVAMETASFSNYAGFTGVRLGWTVI-PKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--LEAMHK 333 (432)
T ss_dssp --GGTEEEEEESHHHHCTTTTCCEEEEC-CTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH--HHHHHH
T ss_pred --CCeEEEEecchhccCCcccceEEEEE-ChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc--HHHHHH
Confidence 46789999999999999999999998 4444 66665543 234678899998888886432 356788
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEE
Q 019899 231 NKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~ 310 (334)
++++++++++++.+.|++.|+++..+.+++++|++++.. +..++...+++++||.+.||..|++..++++|++
T Consensus 334 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis 406 (432)
T 3ei9_A 334 VIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQ-------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS 406 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEECSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCceecCCCcceEEEEECCCC-------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE
Confidence 899999999999999999999888877889999999832 3467888888888999999999987678999999
Q ss_pred ecCCCcccHHHHHHHHHHHHHH
Q 019899 311 FTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 311 ~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
+. .+++++++++++|++--+.
T Consensus 407 ~~-~~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 407 AF-GHRENILEACRRFKQLYKH 427 (432)
T ss_dssp CC-SCHHHHHHHHHHHHHHHTT
T ss_pred ec-CCHHHHHHHHHHHHHHhhh
Confidence 87 6899999999999876443
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=307.43 Aligned_cols=298 Identities=16% Similarity=0.300 Sum_probs=233.2
Q ss_pred CCCcEEEecCcHHHHHHHHHH-----hcCCCCeEEecCCCCCChhhhhhh-ccCcEEEEEeCCCCCCccccHHHHHHHHH
Q 019899 16 DPSQIVLTAGATPAVEILCFC-----LADHGNALLVPSPYYPGFDRDIRF-RTGVELIPVHCRSTDNFAFSITALDQAFN 89 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~-----l~~~gd~vl~~~p~~~~~~~~~~~-~~g~~v~~v~~~~~~~~~~~~~~l~~~l~ 89 (334)
++++|++|+|+++++..++.+ ++++||+|++++|+|+.+...+.. ..|.+++.+++++++++.+|+++++++++
T Consensus 164 ~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 243 (546)
T 2zy4_A 164 ESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD 243 (546)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred CcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence 468999999999999999988 578999999999999999987541 34789999998766778899999988765
Q ss_pred HHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHH--HhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEE
Q 019899 90 QARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA--REKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVH 167 (334)
Q Consensus 90 ~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~--~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (334)
. +++++++++|+||||.+++.+++++|+++| +++|++||+||+|+++.++ +.++.... .++++
T Consensus 244 ~------~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~------~~~~i 308 (546)
T 2zy4_A 244 P------AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAIC------PENTL 308 (546)
T ss_dssp T------TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHHC------GGGEE
T ss_pred C------CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHhC------CCCEE
Confidence 3 799999999999999999999999999999 8899999999999998753 23444332 46899
Q ss_pred EEecccccCCCCCceEEEEeecCHHHHHHHHHh--------------------------------------hcccCCChH
Q 019899 168 IIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--------------------------------------TRFCSISAP 209 (334)
Q Consensus 168 ~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~ 209 (334)
++.||||.+|++|+|+||++++++++++.+... ....+.+++
T Consensus 309 ~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~ 388 (546)
T 2zy4_A 309 LVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTP 388 (546)
T ss_dssp EEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHH
T ss_pred EEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcH
Confidence 999999999999999999998554466665311 111356777
Q ss_pred HHHHH-----HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcC---CCC-------C
Q 019899 210 TQRLL-----ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLI---PSY-------S 274 (334)
Q Consensus 210 ~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~---~~~-------~ 274 (334)
.|.++ ..++... +.+..++++.++++++.+.+.|. .++....+.+++|+|++++... ... .
T Consensus 389 ~Q~a~a~~a~~all~~~---~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~ 464 (546)
T 2zy4_A 389 QQVQMALFSLFALMDEA---DEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVK 464 (546)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhc
Confidence 77764 3455442 34556778889999999999886 5666667889999999986310 000 0
Q ss_pred hhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 275 EKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 275 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++.+.+.++++++||.+.||..|+. .++++|++++..+++++++++++|+++++++
T Consensus 465 ~~~~~~~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 465 QSSTGDMLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp HCCHHHHHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 001235556668889999999999986 4679999999558899999999999988753
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=286.35 Aligned_cols=293 Identities=20% Similarity=0.325 Sum_probs=242.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++.++ |+|+++.|+|.++...++ ..|.+++.++++++ ..++++++
T Consensus 66 l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~~~~~~~l 138 (361)
T 3ftb_A 66 LNKSIENYLKLKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINAK-KHGVSVVFSYLDEN--MCIDYEDI 138 (361)
T ss_dssp HHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHH-HTTCEEEEEECCTT--SCCCHHHH
T ss_pred HHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHH-HcCCeEEEeecCcc--cCCCHHHH
Confidence 334444445678899999999999999999988 899999999999999998 89999999998533 35677888
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++++++ ++++++++|+||||.++|.+++++|+++|++||+++|+||+|+++.++ .. .+...... ..+
T Consensus 139 ~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~-~~~~~~~~----~~~ 205 (361)
T 3ftb_A 139 ISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PS-SSFVGEIK----NYS 205 (361)
T ss_dssp HHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TT-SSSGGGTT----TCS
T ss_pred HHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cc-cchhHhcc----cCC
Confidence 888752 789999999999999999999999999999999999999999998875 22 22222222 167
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.|+||.+|++|+|+||+++.++++.+.++.....++.+++.+.++..+++.. +++.+.+++++++++++.+
T Consensus 206 ~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~ 281 (361)
T 3ftb_A 206 CLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDT----NYIEESLLWIKKERKRFIE 281 (361)
T ss_dssp SEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999994489999999988888899999999999999863 4567788889999999999
Q ss_pred HHHhC-CCc-ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 245 GLKQL-GIR-CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 245 ~l~~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
.|+++ ++. +..+. +.++|++++.. +..++...|.+ +||.+.||..|+...++++|++++ ++++++++
T Consensus 282 ~l~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l 350 (361)
T 3ftb_A 282 ELNKIGFIKRVFSPH-ANFVLCRLENI-------SGEKLYDSLLK-EDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKF 350 (361)
T ss_dssp HHHHSSSEEEEECCS-SSEEEEEESSS-------CHHHHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHH
T ss_pred HHHhCCCCceecCCC-CeEEEEEcCCC-------CHHHHHHHHHH-CCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHH
Confidence 99988 677 55555 45677888761 34678888665 699999999987666789999998 78888888
Q ss_pred HHHHHHHHHH
Q 019899 323 IERIQKVAET 332 (334)
Q Consensus 323 l~~l~~~~~~ 332 (334)
++.|+++.+.
T Consensus 351 ~~~l~~~~~~ 360 (361)
T 3ftb_A 351 LRALKGVENN 360 (361)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 8888887754
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=295.88 Aligned_cols=309 Identities=16% Similarity=0.197 Sum_probs=244.3
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHH--HHHHHhcC--C---------CCeEEecCCCCCChhhhhhhccCcEEEEEeC
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVE--ILCFCLAD--H---------GNALLVPSPYYPGFDRDIRFRTGVELIPVHC 71 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~--~~~~~l~~--~---------gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~ 71 (334)
+++.+++.+++++++|++|+|+++++. .++.++++ + ||+|++++|+|.++...++ ..|.+++.+|+
T Consensus 75 lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~ 153 (423)
T 3ez1_A 75 ARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ-TLGFELLTVDM 153 (423)
T ss_dssp HHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH-HHTCEEEEEEE
T ss_pred HHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHH-HcCCEEEeccC
Confidence 455566666788999999999999998 88888877 7 5999999999999999998 89999999998
Q ss_pred CCCCCccccHHHHHHHHHHHHHcCCceeEEEEe-CCCCCcccCCCHHHHHHHHHHH-HhcCcEEEEeccccccccCC---
Q 019899 72 RSTDNFAFSITALDQAFNQARKRGVKVRGILIC-NPANPVGNIIPRETLYELLDFA-REKNIHVISDEIYGGSIFGN--- 146 (334)
Q Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~-~p~nptG~~~~~~~l~~i~~~~-~~~~~~vi~D~~~~~~~~~~--- 146 (334)
++ ..+|+++|++++++ ..++++|+++ +|+||||.+++.+++++|+++| +++|++||+||+|+.+.+.+
T Consensus 154 ~~---~g~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~ 226 (423)
T 3ez1_A 154 QS---DGPDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDR 226 (423)
T ss_dssp ET---TEECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSC
T ss_pred CC---CCCCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCC
Confidence 43 25999999999962 1378988755 7899999999999999999999 99999999999999765543
Q ss_pred CCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCC-hHH
Q 019899 147 EEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSD-TKF 223 (334)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-~~~ 223 (334)
....++..+....+ ..++++++.|+||. +++|+|+||+++ ++++++.+..... .++.+++.|.++..++.. .+.
T Consensus 227 ~~~~~~~~~~~~~~-~~~~~i~~~S~sK~-~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 303 (423)
T 3ez1_A 227 AEPVNFVVLARDAG-YPDRAFVFASTSKI-TFAGAGLGFVAS-SEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGG 303 (423)
T ss_dssp CCCCCHHHHHHHHT-CTTSEEEEEESTTT-SCSSSSCEEEEE-CHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTH
T ss_pred CCCcchhhhhhccC-CCCeEEEEeCchhh-ccCCcceEEEEe-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccch
Confidence 23345554421001 16889999999998 469999999998 8888888876543 357788999998888876 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----CC--CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC-C
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQ----LG--IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP-G 296 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~----~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g 296 (334)
+.+++.+.++.++++++.+.+.|.+ .+ +++..+.+|+++|++++.. +..++... ++++||.+.| |
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-------~~~~~~~~-l~~~gv~v~~~g 375 (423)
T 3ez1_A 304 LEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-------VADRVVKL-AEAAGVSLTPAG 375 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-------CHHHHHHH-HHHTTEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-------cHHHHHHH-HHHCCcEEecCc
Confidence 3566677777777777777666654 44 6777888999999999863 23455555 6678999999 7
Q ss_pred CCcCC---CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 297 SACHC---IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 297 ~~~~~---~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
..|+. ..++++||+++..+++++++++++|++++++
T Consensus 376 ~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 376 ATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp TTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 77753 2468999999855999999999999999875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=295.20 Aligned_cols=285 Identities=15% Similarity=0.174 Sum_probs=233.5
Q ss_pred CCC--cEEEecCcHHHHHHHH--HHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHH
Q 019899 16 DPS--QIVLTAGATPAVEILC--FCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQA 91 (334)
Q Consensus 16 ~~~--~i~~~~g~~~~~~~~~--~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~ 91 (334)
+++ +|++|+|+++++..++ .+++++||+|++++|+|.++...++ ..|.+++.+++.+++++.+|++++++++++.
T Consensus 92 ~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 170 (397)
T 3fsl_A 92 KQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFA-GAGFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp HTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHH-HTTCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred cccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHH-HcCCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence 678 8999999999999994 4567899999999999999999998 8999999999854567889999999999731
Q ss_pred HHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCC-CCcchhhhhhhccccCCCcEEEEe
Q 019899 92 RKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGN-EEFVSMAEILEAEEVDKDRVHIIY 170 (334)
Q Consensus 92 ~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 170 (334)
..+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++ ....++..+.. ..++++++.
T Consensus 171 ---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~ 243 (397)
T 3fsl_A 171 ---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS----AGLPALVSN 243 (397)
T ss_dssp ---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH----TTCCEEEEE
T ss_pred ---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh----cCCCEEEEe
Confidence 1267889999999999999999999999999999999999999999998863 23345544433 268899999
Q ss_pred cccccCCCCCceEEEEee--cCHHHHHHHHH-h-----hcccCCChHHHHHHHHhhCChHH---HHHHHHHHHHHHHHHH
Q 019899 171 GLSKDLSLPGFRTGVIYS--YNESVLAAAKK-L-----TRFCSISAPTQRLLISMLSDTKF---IQEYLETNKRRIKKLY 239 (334)
Q Consensus 171 s~sK~~~~~g~r~g~i~~--~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 239 (334)
|+||.+|++|+|+||+++ .++++++.+.. . ....+.+...+.++..++....+ ..+++.++++++++++
T Consensus 244 S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 244 SFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp ECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999974 46666554432 1 12335578889988888887532 1456788899999999
Q ss_pred HHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 240 DSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 240 ~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++.+.|++. ++.+..+.+|+++|++++. +....+++++||.+.||. |++++..+
T Consensus 324 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~----------Ris~~~~~ 382 (397)
T 3fsl_A 324 QELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVAGLN 382 (397)
T ss_dssp HHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTC----------EEEGGGCC
T ss_pred HHHHHHHHhcCCCCCceeecCCceEEEecCCCH-----------HHHHHHHHhCCEEECCCC----------eEEEEecC
Confidence 9999999987 6888888899999987742 445566788999999864 99998668
Q ss_pred cccHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKV 329 (334)
Q Consensus 316 ~~~l~~~l~~l~~~ 329 (334)
++++++++++|+++
T Consensus 383 ~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 383 TANVQRVAKAFAAV 396 (397)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhh
Confidence 89999999999876
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=318.66 Aligned_cols=311 Identities=21% Similarity=0.276 Sum_probs=253.8
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCC-CCcccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST-DNFAFS 80 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~~ 80 (334)
++|+.+..+ +.+++++|++|+|+++++..++.++.++||+|+++.|+|+++...++ ..|.+++.++..++ +++.+|
T Consensus 76 a~~l~~~~g--~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~g~~~~d 152 (392)
T 3b1d_A 76 LDWEKSEHQ--YSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVR-LNNRKLVSNSLKEENGLFQID 152 (392)
Confidence 344444333 44778899999999999999999999999999999999999999888 88999999987433 246799
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++. +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.+++..+.++..+.. +
T Consensus 153 ~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~ 225 (392)
T 3b1d_A 153 FEQLENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSP--D 225 (392)
Confidence 99999999742 6889999999999999999999999999999999999999999999887655555554432 0
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc---CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC---SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
+ .++++++.|+||.+|++|+|+||++++++++++.++.....+ +.+++.+.++..++... ++++.+.++++++
T Consensus 226 ~-~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~ 301 (392)
T 3b1d_A 226 F-KDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG---KPWLVALKAVLEE 301 (392)
Confidence 0 467899999999999999999999985566888887665544 45778888887777642 3556778888999
Q ss_pred HHHHHHHHHHh-C-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 238 LYDSFVAGLKQ-L-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 238 ~~~~~~~~l~~-~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++.+.+.|++ + ++++..+.+++++|++++... .+..++...|++++||.+.||..|+...++++|++++ .+
T Consensus 302 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~ 375 (392)
T 3b1d_A 302 NIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYG-----LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA-AP 375 (392)
Confidence 99999999987 4 788888899999999987521 1235788886667899999999887555689999998 57
Q ss_pred cccHHHHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKVAET 332 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~~ 332 (334)
++++++++++|++++++
T Consensus 376 ~e~i~~~l~~l~~~l~~ 392 (392)
T 3b1d_A 376 KSLVEEICKRIVCCLPK 392 (392)
Confidence 89999999999988753
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=299.10 Aligned_cols=289 Identities=22% Similarity=0.293 Sum_probs=227.3
Q ss_pred CCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcE-EEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 15 FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVE-LIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 15 ~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~-v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+++++|++|+|+++++..++. ++++||+|++++|+|+++...++ ..|.+ ++.+|+++++++..+++++
T Consensus 93 ~~~~~v~~~~G~~~al~~~~~-~~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~l~~~--------- 161 (400)
T 3asa_A 93 VDAKEIFISDGAKVDLFRLLS-FFGPNQTVAIQDPSYPAYLDIAR-LTGAKEIIALPCLQENAFFPEFPED--------- 161 (400)
T ss_dssp SCGGGEEEESCHHHHHHHHHH-HHCSSCEEEEEESCCHHHHHHHH-HTTCSEEEEEECCGGGTTCCCCCTT---------
T ss_pred CCHHHEEEccChHHHHHHHHH-HcCCCCEEEECCCCcHHHHHHHH-HcCCcceEecccchhcCcccChhhc---------
Confidence 678899999999999998764 45789999999999999999888 88988 9999985444444444321
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
.++++|++++|+||||.++|.+++++|+++|+++|+++|+||+|+++.+++....++..+.. ..++++++.|+|
T Consensus 162 --~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~s 235 (400)
T 3asa_A 162 --THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPD----ARFCAIEINSFS 235 (400)
T ss_dssp --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTT----GGGTEEEEEECC
T ss_pred --cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCC----CCCceEEEecch
Confidence 27899999999999999999999999999999999999999999988776543344444321 035789999999
Q ss_pred ccCCCCCceEEEEeecCHHH-------HHHHHH--hhcc-cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 174 KDLSLPGFRTGVIYSYNESV-------LAAAKK--LTRF-CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~-------~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
|.+|++|+|+||+++ ++++ .+.+.. .... ++.+++.+.++..+++.. ++.+.+++++++++++.
T Consensus 236 K~~g~~GlriG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l~ 309 (400)
T 3asa_A 236 KPLGFAGIRLGWTVI-PQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLLR 309 (400)
T ss_dssp GGGTTTTCCCEEEEC-CTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHH
T ss_pred hhcCCcchheeEEee-ChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHH
Confidence 999999999999998 5555 444432 2223 368899998888887543 34567788889999999
Q ss_pred HHHHhCCCcccCCCceeEEeee-cCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 244 AGLKQLGIRCSESSAGLYCWAD-MSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 244 ~~l~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
+.|++.|+++..+.+++++|++ ++...+ ..++...|++++||.+.||..|+...++++|+++. .++++++++
T Consensus 310 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~-~~~e~i~~~ 382 (400)
T 3asa_A 310 KALLATGFEVFGGEHAPYLWVKPTQANIS------DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSL-GKREDILAA 382 (400)
T ss_dssp HHHHHTTCEEEECSSSSEEEEECCCTTCC------TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECC-SCHHHHHHH
T ss_pred HHHHHCCCeeeCCCCceEEEEeccCCCCC------HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEee-CCHHHHHHH
Confidence 9999888888777788899999 765322 24678887777899999999887555789999964 689999999
Q ss_pred HHHHHHHHHHc
Q 019899 323 IERIQKVAETC 333 (334)
Q Consensus 323 l~~l~~~~~~~ 333 (334)
+++|+++++++
T Consensus 383 l~~l~~~~~~~ 393 (400)
T 3asa_A 383 CERLQMAPALQ 393 (400)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHHhh
Confidence 99999988763
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=281.90 Aligned_cols=288 Identities=16% Similarity=0.209 Sum_probs=234.9
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++|+.+..+ +++++++|++|+|+++++..++.+++++||+|+++.|+|+++...++ ..|.+++.+|. ++++.+|+
T Consensus 79 a~~l~~~~g--~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~-~~g~~~~~v~~--~~~~~~d~ 153 (369)
T 3cq5_A 79 AAYITKQTG--VAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAK-GTHTEFIAVSR--GADFRIDM 153 (369)
T ss_dssp HHHHHHHHC--CCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHH-HTTCEEEEEEC--CTTSSCCH
T ss_pred HHhhhhccc--CCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-HcCCEEEEecC--CcCCCCCH
Confidence 455665555 67788999999999999999999999999999999999999999888 89999999996 35568999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++. ++++|++++|+||||.++|.+++.+++ +.+++++|+||+|+.+.++ .+...+..
T Consensus 154 ~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~---~~~~~~li~De~~~~~~~~----~~~~~~~~---- 217 (369)
T 3cq5_A 154 DVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERII---NVAPGIVIVDEAYAEFSPS----PSATTLLE---- 217 (369)
T ss_dssp HHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHH---HHCSSEEEEECTTGGGCCS----CCGGGGTT----
T ss_pred HHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHH---HhCCCEEEEECCchhhcCC----cchHHHHh----
Confidence 9999999863 688999999999999999955555554 5556999999999987753 12222211
Q ss_pred CCC-cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 162 DKD-RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 162 ~~~-~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
..+ +++++.|+||.+|++|+|+||+++ ++++.+.+......++.+++.+.++..+++.. +++.+.+++++++++
T Consensus 218 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~ 292 (369)
T 3cq5_A 218 KYPTKLVVSRTMSKAFDFAGGRLGYFVA-NPAFIDAVMLVRLPYHLSALSQAAAIVALRHS----ADTLGTVEKLSVERV 292 (369)
T ss_dssp TCTTTEEEEEESSSTTSCGGGCCEEEEE-CTHHHHHHHTTSCTTCSCHHHHHHHHHHHHTH----HHHHTHHHHHHHHHH
T ss_pred hCCCCEEEEEechHhcCCcccceEEEEe-CHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHH
Confidence 145 889999999999989999999999 67888888877777889999999988888763 345677888899999
Q ss_pred HHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHH
Q 019899 241 SFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIP 320 (334)
Q Consensus 241 ~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~ 320 (334)
++.+.|++.|+++..+ .+.++|++++. +..++...| .++||.+.||. .++++|++++ ++++++
T Consensus 293 ~l~~~L~~~g~~~~~~-~~~~~~~~~~~--------~~~~l~~~l-~~~gi~v~~~~-----~~~~iRis~~--~~~~i~ 355 (369)
T 3cq5_A 293 RVAARLEELGYAVVPS-ESNFVFFGDFS--------DQHAAWQAF-LDRGVLIRDVG-----IAGHLRTTIG--VPEEND 355 (369)
T ss_dssp HHHHHHHHHTCEEECC-SSSEEEEECCS--------SHHHHHHHH-HHTTEECBCCS-----CTTEEEEECC--CHHHHH
T ss_pred HHHHHHHhCCCEECCC-CCeEEEEECCC--------CHHHHHHHH-HHCCEEEEECC-----CCCeEEEEeC--CHHHHH
Confidence 9999998888887644 55677888861 345778875 56899999982 2578999998 889999
Q ss_pred HHHHHHHHHHHH
Q 019899 321 LVIERIQKVAET 332 (334)
Q Consensus 321 ~~l~~l~~~~~~ 332 (334)
++++.|+++++.
T Consensus 356 ~~~~~l~~~~~~ 367 (369)
T 3cq5_A 356 AFLDAAAEIIKL 367 (369)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=291.92 Aligned_cols=285 Identities=18% Similarity=0.247 Sum_probs=231.0
Q ss_pred CCcEE--EecCcHHHHHHHH---HHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHH
Q 019899 17 PSQIV--LTAGATPAVEILC---FCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQA 91 (334)
Q Consensus 17 ~~~i~--~~~g~~~~~~~~~---~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~ 91 (334)
+++|. .+.++++++..+. .+++++||+|++++|+|.++...++ ..|.+++.+++.+++++.+|++++++++++.
T Consensus 102 ~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 180 (409)
T 4eu1_A 102 DGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFA-KAGMELTPYSYYDPATKGLNLAGMLECLDKA 180 (409)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHH-HTTCEEEEECCEETTTTEECHHHHHHHHHHS
T ss_pred cCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH-HcCCeEEEEEeecCcCCcCcHHHHHHHHHhC
Confidence 67884 4899999988764 4456899999999999999999999 8999999999865577899999999999742
Q ss_pred HHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC--CcchhhhhhhccccCCCcEEEE
Q 019899 92 RKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE--EFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 92 ~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
..+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+.. ..++++++
T Consensus 181 ---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~----~~~~~i~~ 253 (409)
T 4eu1_A 181 ---PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVD----MVPNLIVA 253 (409)
T ss_dssp ---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHT----TSSCCEEE
T ss_pred ---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHh----hCCcEEEE
Confidence 12456677799999999999999999999999999999999999999888652 1233333322 15778999
Q ss_pred ecccccCCCCCceEEEE--eecCHH----HHHHHHHhh--cccCCChHHHHHHHHhhCChHHH---HHHHHHHHHHHHHH
Q 019899 170 YGLSKDLSLPGFRTGVI--YSYNES----VLAAAKKLT--RFCSISAPTQRLLISMLSDTKFI---QEYLETNKRRIKKL 238 (334)
Q Consensus 170 ~s~sK~~~~~g~r~g~i--~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 238 (334)
+|+||.+|++|+|+||+ ++.+++ +.+.++... ...+.+++.+.++..++...+.. .+.+.+++++++++
T Consensus 254 ~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (409)
T 4eu1_A 254 QSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEV 333 (409)
T ss_dssp EECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 555777 556665543 23466789999999988875421 33467888999999
Q ss_pred HHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCC
Q 019899 239 YDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSL 314 (334)
Q Consensus 239 ~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~ 314 (334)
++++.+.|++.| +++..+.+++++|++++ .+++..+++++||.+.|| .|++++..
T Consensus 334 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ll~~~gv~v~p~----------~Ri~~~~~ 392 (409)
T 4eu1_A 334 RKRLVSELKACGSVHDWSHIERQVGMMAYTGLT-----------REQVELLRSEYHIYMTLN----------GRAAVSGL 392 (409)
T ss_dssp HHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCC-----------HHHHHHHHHHHCEECCTT----------CEEEGGGC
T ss_pred HHHHHHHHHhcCCCCCcceecCCceEEEEeCCC-----------HHHHHHHHHcCCEEEcCC----------CEEEEEec
Confidence 999999999987 77778889999997654 356778788899999885 28999877
Q ss_pred CcccHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVA 330 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~ 330 (334)
+++++++++++|++++
T Consensus 393 ~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 393 NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp CTTTHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHh
Confidence 8899999999999876
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=293.41 Aligned_cols=311 Identities=19% Similarity=0.268 Sum_probs=241.9
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCC--------------eEEec-CCCCCChhhh------hh
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGN--------------ALLVP-SPYYPGFDRD------IR 59 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd--------------~vl~~-~p~~~~~~~~------~~ 59 (334)
+|+|+.+.++ +++++++|++|+|+++++.+++.+++++|| +|+++ +|+|+.+... +.
T Consensus 92 ia~~l~~~~g--~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~ 169 (444)
T 3if2_A 92 LVGFFNRHYD--WNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFA 169 (444)
T ss_dssp HHHHHHHHHC--CCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEE
T ss_pred HHHHHHhhcC--CCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhh
Confidence 3567766666 678899999999999999999999998888 78876 9999998774 33
Q ss_pred hccCcEEEEEeCCCCC---CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEe
Q 019899 60 FRTGVELIPVHCRSTD---NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISD 136 (334)
Q Consensus 60 ~~~g~~v~~v~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D 136 (334)
..|..++.+++++++ ++.+|+++|+++++.. ..++++|++++|+||||.++|.+++++|+++|++||++||+|
T Consensus 170 -~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D 245 (444)
T 3if2_A 170 -AVLPHIDEVTHDGEEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIID 245 (444)
T ss_dssp -ECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred -ccCceEEecccccccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888888874322 3679999999985421 137899999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHH
Q 019899 137 EIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLL 214 (334)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 214 (334)
|+|+.+.. +........ . ..++++++.|+||. +++|+|+||+++ ++++.+.+..... .++.+++.+.++
T Consensus 246 e~~~~~~~-~~~~~~~~~-----~-~~~~~i~~~S~sK~-~~~G~r~G~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~a~ 316 (444)
T 3if2_A 246 NAYGMPFP-NIIYSDAHL-----N-WDNNTILCFSLSKI-GLPGMRTGIIVA-DAKVIEAVSAMNAVVNLAPTRFGAAIA 316 (444)
T ss_dssp CTTCTTTT-CCBCSCCCC-----C-CCTTEEEEEESTTT-TCGGGCCEEEEC-CHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred CCCCCccc-ccccccccc-----c-CCCCEEEEechhhc-cCCCCceEEEEE-CHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 99975321 111111100 0 15789999999997 679999999998 8899888876544 357788999999
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcC
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAK 290 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 290 (334)
..++...++........++.++++++.+.+.|.+. ++.+..+.+++++|++++... .+..++...| +++|
T Consensus 317 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l-~~~g 390 (444)
T 3if2_A 317 TPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP-----ISTLDLYERL-KAKG 390 (444)
T ss_dssp HHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS-----SCHHHHHHHH-HHTT
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC-----CCHHHHHHHH-HHCC
Confidence 99988766533332336777888888888877663 566777889999999998621 1346777774 6689
Q ss_pred eEEcCCCCcCCCC--------CCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 291 INVTPGSACHCIE--------PGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 291 i~v~~g~~~~~~~--------~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
|.+.||+.|+... ++++|++++. +++++++++++|++++++.
T Consensus 391 i~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 391 TLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp EECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHH
T ss_pred eEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999885431 2689999995 9999999999999998763
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-39 Score=289.87 Aligned_cols=290 Identities=16% Similarity=0.211 Sum_probs=231.0
Q ss_pred CCCCcEEE--ecCcHHHHHHHH--HHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHH
Q 019899 15 FDPSQIVL--TAGATPAVEILC--FCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQ 90 (334)
Q Consensus 15 ~~~~~i~~--~~g~~~~~~~~~--~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~ 90 (334)
+++++|++ |+|+++++.+++ ..++++||+|+++.|+|+++...++ ..|.+++.++..+++++.+|++++++++++
T Consensus 94 ~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 172 (412)
T 1yaa_A 94 LQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE-NQGLKTATYPYWANETKSLDLNGFLNAIQK 172 (412)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHH-TTTCCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred CCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHH-HcCceEEEEeeecCCCCccCHHHHHHHHHh
Confidence 46889999 999999999883 4445799999999999999999998 889999999973234678999999999976
Q ss_pred HHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCC--CCcchhhhhhhccccCCC---c
Q 019899 91 ARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGN--EEFVSMAEILEAEEVDKD---R 165 (334)
Q Consensus 91 ~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~ 165 (334)
. ..+..++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++ ....++..+... .+ +
T Consensus 173 ~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 245 (412)
T 1yaa_A 173 A---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK----LSTVSP 245 (412)
T ss_dssp S---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH----TTTTCC
T ss_pred C---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc----CCCCcc
Confidence 2 1124445559999999999999999999999999999999999999988754 122334333321 34 7
Q ss_pred EEEEecccccCCCCCceEEEEe--e----cCHH----HHHHHHHh-hcc-cCCChHHHHHHHHhhCChHH---HHHHHHH
Q 019899 166 VHIIYGLSKDLSLPGFRTGVIY--S----YNES----VLAAAKKL-TRF-CSISAPTQRLLISMLSDTKF---IQEYLET 230 (334)
Q Consensus 166 ~~~~~s~sK~~~~~g~r~g~i~--~----~~~~----~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~---~~~~~~~ 230 (334)
++++.|+||.+|++|+|+||++ + ++++ +++.+... ... .+.+++.+.++..++...++ ..+++.+
T Consensus 246 ~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 325 (412)
T 1yaa_A 246 VFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT 325 (412)
T ss_dssp EEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred eEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8999999999997799999998 6 2555 77777653 333 34588999999999877542 1356788
Q ss_pred HHHHHHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCe
Q 019899 231 NKRRIKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~ 306 (334)
.+++++++++++.+.|++++ +++..+.+|+++|+.++ ...+ ..+++++||.+.| +
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~l~~~gi~v~~----------~ 384 (412)
T 1yaa_A 326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT----------PQMV-KRLEETHAVYLVA----------S 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC----------HHHH-HHHHHHHCEECCT----------T
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC----------HHHH-HHHHHhCCEEecc----------C
Confidence 89999999999999999876 88878889999987653 1234 6667778999986 3
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 307 FRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 307 iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+|++++..+++++++++++|+++++..
T Consensus 385 ~Ris~~~~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 385 GRASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp SEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred cEEEEccCCHhHHHHHHHHHHHHHHhh
Confidence 699998669999999999999998754
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-39 Score=289.69 Aligned_cols=290 Identities=18% Similarity=0.218 Sum_probs=235.7
Q ss_pred CCCcEEE--ecCcHHHHHHHHH--HhcCCC-----CeEEecCCCCCChhhhhhhccCcE-EEEEeCCCCCCccccHHHHH
Q 019899 16 DPSQIVL--TAGATPAVEILCF--CLADHG-----NALLVPSPYYPGFDRDIRFRTGVE-LIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 16 ~~~~i~~--~~g~~~~~~~~~~--~l~~~g-----d~vl~~~p~~~~~~~~~~~~~g~~-v~~v~~~~~~~~~~~~~~l~ 85 (334)
++++|++ |+|+++++..++. .++++| |+|+++.|+|+++...++ ..|.+ ++.+++.+++++.+|+++++
T Consensus 96 ~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~~d~~~l~ 174 (412)
T 1ajs_A 96 QEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT-TAGFKDIRSYRYWDTEKRGLDLQGFL 174 (412)
T ss_dssp HTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH-HTTCSCEEEEECEETTTTEECHHHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHH-HcCCceeEEEeeecCCCCccCHHHHH
Confidence 6789999 9999999999954 456789 999999999999999988 88999 99999754467789999999
Q ss_pred HHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCC--CCcchhhhhhhccccCC
Q 019899 86 QAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGN--EEFVSMAEILEAEEVDK 163 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 163 (334)
+++++. +.+++++++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++ ....++..+.. ..
T Consensus 175 ~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~----~~ 247 (412)
T 1ajs_A 175 SDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS----EG 247 (412)
T ss_dssp HHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----TT
T ss_pred HHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhc----cC
Confidence 998752 2256778889999999999999999999999999999999999999988754 12334444432 15
Q ss_pred CcEEEEecccccCCCCCceEEEEee--cCHH----HHHHHHH-hhcccC-CChHHHHHHHHhhCChHHH---HHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYS--YNES----VLAAAKK-LTRFCS-ISAPTQRLLISMLSDTKFI---QEYLETNK 232 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~--~~~~----~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~---~~~~~~~~ 232 (334)
++++++.|+||.+|++|+|+||+++ ++++ +.+.+.. ....+. .+++.+.++..+++..++. .+++.+.+
T Consensus 248 ~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 327 (412)
T 1ajs_A 248 FELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA 327 (412)
T ss_dssp CCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence 7889999999999978999999998 3565 4444444 233444 5889999999988775311 34668888
Q ss_pred HHHHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEE
Q 019899 233 RRIKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFR 308 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iR 308 (334)
++++++++++.+.|++.+ +++..+.+|+++|++++ .+....+++++||.+.|+ +|
T Consensus 328 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gv~v~~~----------~R 386 (412)
T 1ajs_A 328 DRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------PKQVEYLINQKHIYLLPS----------GR 386 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHTTCEECCTT----------SE
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----------HHHHHHHHHhCCEEecCC----------cE
Confidence 999999999999999886 77777888999988664 256666687899999873 59
Q ss_pred EEecCCCcccHHHHHHHHHHHHHHcC
Q 019899 309 CCFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 309 i~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
++++..+++++++++++|++++++.+
T Consensus 387 is~~~~~~~~i~~~~~~l~~~l~~~~ 412 (412)
T 1ajs_A 387 INMCGLTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp EEGGGCCTTTHHHHHHHHHHHHHHCC
T ss_pred EEeeeCCHHHHHHHHHHHHHHHHhcC
Confidence 99986699999999999999998753
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=293.28 Aligned_cols=306 Identities=19% Similarity=0.273 Sum_probs=233.2
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCC-----eEEec-CCCCCChhhhhhh-----ccCcEEEEE
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGN-----ALLVP-SPYYPGFDRDIRF-----RTGVELIPV 69 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd-----~vl~~-~p~~~~~~~~~~~-----~~g~~v~~v 69 (334)
+|+|+.+..+ +++++++|++|+|+++++.+++.+++++|| +|+++ +|+|+++...+.. ..+..+..+
T Consensus 84 ia~~~~~~~g--~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (417)
T 3g7q_A 84 LAVLLRETLG--WDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELL 161 (417)
T ss_dssp HHHHHHHHHC--CCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEE
T ss_pred HHHHHHHHhC--CCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCccccc
Confidence 3567766666 678899999999999999999999999987 89997 9999988765420 133445555
Q ss_pred eCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc
Q 019899 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF 149 (334)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~ 149 (334)
+.. ..++.+|+++++ +++ +++++++++|+||||.++|.+++++|+++|++||+++|+||+|+.+.. +...
T Consensus 162 ~~~-~~~~~~d~~~l~--~~~------~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~-~~~~ 231 (417)
T 3g7q_A 162 PEG-QFKYHVDFEHLH--IGE------ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFP-GIIF 231 (417)
T ss_dssp GGG-EEEEECCGGGCC--CCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT-CCBC
T ss_pred CCc-ccccccCHHHhc--ccc------CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccc-cccc
Confidence 421 124678988887 443 789999999999999999999999999999999999999999976321 1111
Q ss_pred chhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHH
Q 019899 150 VSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
.... . + ..++++++.|+|| ++++|+|+||+++ ++++.+.+...... ++.+++.+.++..++...++....
T Consensus 232 ~~~~---~--~-~~~~~i~~~s~sK-~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 303 (417)
T 3g7q_A 232 SEAR---P--L-WNPNIILCMSLSK-LGLPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLS 303 (417)
T ss_dssp SCCC---C--C-CCTTEEEEEESGG-GTCTTSCCEEEEC-CHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHH
T ss_pred cccc---c--C-CCCCEEEEEechh-ccCCCcceEEEEe-CHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHH
Confidence 1111 0 1 1578999999999 5779999999998 89999988876543 457889999999998876543322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE 303 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~ 303 (334)
...+++.++++++.+.+.|++. ++.+..+.+|+++|++++... .+..++...| .++||.+.||..|+...
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l-~~~gi~v~~g~~f~~~~ 377 (417)
T 3g7q_A 304 ETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLP-----ITTELLYQRL-KARGVLMVPGHYFFPGL 377 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCS-----SCHHHHHHHH-HHTTEECEEGGGGCTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCC-----CCHHHHHHHH-HHCCEEEECchhhCCCC
Confidence 2236777888888888888663 577778889999999998621 1346788875 66899999999886542
Q ss_pred -------CCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 304 -------PGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 304 -------~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
++++|++++. +++++++++++|++++++.
T Consensus 378 ~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 378 DKPWPHTHQCMRMNYVP-EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp SSCCGGGGGEEEEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 4699999994 9999999999999998764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=289.22 Aligned_cols=290 Identities=17% Similarity=0.198 Sum_probs=234.3
Q ss_pred CCcEEE--ecCcHHHHHH--HHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCC-CccccHHHHHHHH
Q 019899 17 PSQIVL--TAGATPAVEI--LCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTD-NFAFSITALDQAF 88 (334)
Q Consensus 17 ~~~i~~--~~g~~~~~~~--~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~-~~~~~~~~l~~~l 88 (334)
+++|++ |+|+++++.. .+.+++.+||+|++++|+|.++...++. ..|.+++.+++.+++ ++.+|++++++++
T Consensus 117 ~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l 196 (448)
T 3meb_A 117 EGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDI 196 (448)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHH
T ss_pred cCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHH
Confidence 689999 9999999987 5566778999999999999999887652 568999999985445 6899999999999
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC--CcchhhhhhhccccCCCcE
Q 019899 89 NQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE--EFVSMAEILEAEEVDKDRV 166 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 166 (334)
++. ..+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+.. ...++
T Consensus 197 ~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~----~~~~~ 269 (448)
T 3meb_A 197 QSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVD----AGVEV 269 (448)
T ss_dssp HHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHH----TTCCE
T ss_pred HhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhh----cCCcE
Confidence 852 12577889999999999999999999999999999999999999999887641 1233333322 15788
Q ss_pred EEEecccccCCCCCceEEEE--ee--------cCH----HHHHHHHHhh--cccCCChHHHHHHHHhhCChHHH---HHH
Q 019899 167 HIIYGLSKDLSLPGFRTGVI--YS--------YNE----SVLAAAKKLT--RFCSISAPTQRLLISMLSDTKFI---QEY 227 (334)
Q Consensus 167 ~~~~s~sK~~~~~g~r~g~i--~~--------~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~---~~~ 227 (334)
+++.|+||.+|++|+|+||+ ++ +++ .+.+.+.... ...+.+.+.+.++..++...++. .+.
T Consensus 270 i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~ 349 (448)
T 3meb_A 270 LVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDN 349 (448)
T ss_dssp EEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred EEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999998 65 456 5555555432 23356789999999999876432 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---C------CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQL---G------IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~---g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+.+++++++++++++.+.|++. + +....+.+++++|..++ .+++..+++++||.+.||+
T Consensus 350 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~ll~~~gV~v~~G~- 417 (448)
T 3meb_A 350 VKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT-----------PEHVDYLKEKWSIYLVKAG- 417 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEEECSGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC-----------HHHHHHHHHhCCEEEeCCC-
Confidence 6888899999999999999987 3 55567889999998774 3677887888999999976
Q ss_pred cCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.|+|++..+++++++++++|+++++++
T Consensus 418 --------gRis~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 418 --------GRMSMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp --------GEEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred --------cEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 299998668889999999999999865
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=277.72 Aligned_cols=280 Identities=17% Similarity=0.252 Sum_probs=225.2
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++|+|+++++..++..+ +||+|++++|+|.++...++ ..|.+++.++++ +++.+|++++
T Consensus 56 lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~l 130 (337)
T 3p1t_A 56 VMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIA-VSGLRHFEIGLT--DDLLLDPNDL 130 (337)
T ss_dssp HHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHT-TSCCEEEEECBC--TTSSBCHHHH
T ss_pred HHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHH-HcCCEEEEecCC--CCCCCCHHHH
Confidence 344444555678889999999999999999988 99999999999999999998 899999999983 4578999998
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
+++ . +++++++++|+||||.++| ++++.++|+++++ +|+||+|+.+.+.+.... . ..+
T Consensus 131 ~~~--~------~~~~v~i~~p~nptG~~~~---~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~-----~-----~~~ 188 (337)
T 3p1t_A 131 AQV--S------RDDCVVLANPSNPTGQALS---AGELDQLRQRAGK-LLIDETYVDYSSFRARGL-----A-----YGE 188 (337)
T ss_dssp TTC--C------TTEEEEEESSCTTTCCCCC---HHHHHHHHHHCSE-EEEECTTGGGSSCSSSCC-----C-----CBT
T ss_pred Hhh--c------CCCEEEEeCCCCCCCCCCC---HHHHHHHHHhCCc-EEEECCChhhcccccccc-----c-----cCC
Confidence 875 1 5789999999999999999 5555666677887 566999998665332111 1 157
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.|+||.+|++|+|+||+++ ++++.+.++.....++.+.+.+.++..+++..++ +.+..+++.++++++.+
T Consensus 189 ~~i~~~S~sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~ 263 (337)
T 3p1t_A 189 NELVFRSFSKSYGLAGLRLGALFG-PSELIAAMKRKQWFCNVGTLDLHALEAALDNDRA----REAHIAKTLAQRRRVAD 263 (337)
T ss_dssp TEEEEEESSSTTCCTTTCCEEEEC-CHHHHHHHHTTSCTTCSCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeCchhccCcchheEEEEe-CHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998 8899999988777788999999999999987443 23445556677889999
Q ss_pred HHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHH
Q 019899 245 GLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 245 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
.|+++|+++..+.+++ +|+..+.. .++... ++++||.+.||..|+. ++++|++++ ++++++++++
T Consensus 264 ~L~~~g~~~~~~~~~~-~~~~~~~~---------~~~~~~-l~~~gi~v~~g~~~~~--~~~iRis~~--~~~~~~~l~~ 328 (337)
T 3p1t_A 264 ALRGLGYRVASSEANF-VLVENAAG---------ERTLRF-LRERGIQVKDAGQFGL--HHHIRISIG--REEDNDRLLA 328 (337)
T ss_dssp HHHHTTCCBCCCSSSE-EEEECTTT---------HHHHHH-HHHTTEECEEGGGGTC--CSEEEEECC--CHHHHHHHHH
T ss_pred HHHHCcCEECCCCCeE-EEEEcCCH---------HHHHHH-HHHCCeEEEECccCCC--CCeEEEecC--CHHHHHHHHH
Confidence 9999888887776664 55665531 355555 6678999999998875 689999998 7899999999
Q ss_pred HHHHHHH
Q 019899 325 RIQKVAE 331 (334)
Q Consensus 325 ~l~~~~~ 331 (334)
.|+++.+
T Consensus 329 al~~~~~ 335 (337)
T 3p1t_A 329 ALAEYSD 335 (337)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9998764
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=286.71 Aligned_cols=287 Identities=17% Similarity=0.207 Sum_probs=230.0
Q ss_pred CCCCcEEE--ecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHH
Q 019899 15 FDPSQIVL--TAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQ 90 (334)
Q Consensus 15 ~~~~~i~~--~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~ 90 (334)
+++++|++ |+|+++++..++..+ +.+||+|++++|+|+++...++ ..|.+++.++..+++++.+|++++++++++
T Consensus 90 ~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 168 (396)
T 2q7w_A 90 INDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-SAGLEVREYAYYDAENHTLDFDALINSLNE 168 (396)
T ss_dssp HHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-HTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred cccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-HcCCceEEEecccCCCCCcCHHHHHHHHHh
Confidence 35789998 999999999998766 4699999999999999999998 899999999975446678999999999874
Q ss_pred HHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCC-CCcchhhhhhhccccCCCcEEEE
Q 019899 91 ARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGN-EEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 91 ~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
. ..+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.+++ ....++..+... .++++++
T Consensus 169 ~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~ 241 (396)
T 2q7w_A 169 A---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM----HKELIVA 241 (396)
T ss_dssp C---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH----CSCEEEE
T ss_pred C---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhc----CCcEEEE
Confidence 1 1246778889999999999999999999999999999999999999988753 122344444331 4688999
Q ss_pred ecccccCCCCCceEEEEee--cCH----HHHHHHHHh-hccc-CCChHHHHHHHHhhCChH---HHHHHHHHHHHHHHHH
Q 019899 170 YGLSKDLSLPGFRTGVIYS--YNE----SVLAAAKKL-TRFC-SISAPTQRLLISMLSDTK---FIQEYLETNKRRIKKL 238 (334)
Q Consensus 170 ~s~sK~~~~~g~r~g~i~~--~~~----~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~ 238 (334)
.|+||.+|++|+|+||+++ +++ ++.+.+... ...+ +.+++.+.++..+++... ...+++++.+++++++
T Consensus 242 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 321 (396)
T 2q7w_A 242 SSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRM 321 (396)
T ss_dssp EECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHH
T ss_pred EeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 355 455555432 2233 458899999999988752 1245677888999999
Q ss_pred HHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCC
Q 019899 239 YDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSL 314 (334)
Q Consensus 239 ~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~ 314 (334)
++++.+.|++.+ +++..+.+|+++|++++. +....+++++||.+.|| +|++++..
T Consensus 322 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ris~~~~ 380 (396)
T 2q7w_A 322 RQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVAS----------GRVNVAGM 380 (396)
T ss_dssp HHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGC
T ss_pred HHHHHHHHHhcCCCCCcceecCCCceEEEecCCH-----------HHHHHHHHhcCeeecCC----------ceEEEeec
Confidence 999999999886 777778889999987641 44556677799999873 59999856
Q ss_pred CcccHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVA 330 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~ 330 (334)
+++++++++++|++++
T Consensus 381 ~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 381 TPDNMAPLCEAIVAVL 396 (396)
T ss_dssp CTTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998763
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=279.00 Aligned_cols=285 Identities=22% Similarity=0.338 Sum_probs=229.3
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
++.+++.+++++++|++|+|+++++..++.+++++||+|++++|+|.++...++ ..|.+++.++++ +++.+ ++++
T Consensus 71 r~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~--~~~~~--~~l~ 145 (360)
T 3hdo_A 71 REVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE-VQGARVRTFGLT--GDFRI--AGFP 145 (360)
T ss_dssp HHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-HHTCEEEEECBC--TTSSB--TTCC
T ss_pred HHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHH-HCCCEEEEeeCC--CCCCH--HHHH
Confidence 344444455788999999999999999999999999999999999999999998 899999999984 33344 4443
Q ss_pred HHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCc
Q 019899 86 QAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR 165 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (334)
+.+ +++++++++|+||||.++| ++++.++|+++|+++|+||+|+.+. +....... .. .++
T Consensus 146 ~~~--------~~~~v~i~~p~nptG~~~~---~~~l~~l~~~~~~~li~De~~~~~~--~~~~~~~~--~~-----~~~ 205 (360)
T 3hdo_A 146 ERY--------EGKVFFLTTPNAPLGPSFP---LEYIDELARRCAGMLVLDETYAEFA--ESNALELV--RR-----HEN 205 (360)
T ss_dssp SSB--------CSSEEEEESSCTTTCCCCC---HHHHHHHHHHBSSEEEEECTTGGGS--SCCCTHHH--HH-----CSS
T ss_pred hhc--------CCCEEEEeCCCCCCCCCcC---HHHHHHHHHHCCCEEEEECChHhhC--CcchhHHh--cc-----CCC
Confidence 221 4679999999999999999 5667777788999999999999863 32222222 12 688
Q ss_pred EEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 166 VHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245 (334)
Q Consensus 166 ~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (334)
++++.|+||.+|++|+|+||+++ ++++.+.++.....++.+++.+.++..+++.. +++.+.+++++++++++.+.
T Consensus 206 ~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~ 280 (360)
T 3hdo_A 206 VVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDHYNLDRLAQAACVAALRDQ----AYLSECCRRIRETREWFTTE 280 (360)
T ss_dssp EEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998 89999999988888899999999999998763 34577788899999999999
Q ss_pred HHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHH
Q 019899 246 LKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIER 325 (334)
Q Consensus 246 l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~ 325 (334)
|++.++.+..+ .+.++|++++.. +..++... +.++||.+.|+... ..++++|++++ ++++++++++.
T Consensus 281 L~~~~~~~~~~-~~~~~~~~~~~~-------~~~~l~~~-l~~~gi~v~~~~~~--~~~~~iRis~~--~~~e~~~l~~a 347 (360)
T 3hdo_A 281 LRSIGYDVIPS-QGNYLFATPPDR-------DGKRVYDG-LYARKVLVRHFSDP--LLAHGMRISIG--TREEMEQTLAA 347 (360)
T ss_dssp HHHTTCEECCC-SSSEEEEECTTC-------CHHHHHHH-HHHTTEECBCCCST--TTTTSEEEECC--CHHHHHHHHHH
T ss_pred HHHCCCEEcCC-CccEEEEECCCC-------CHHHHHHH-HHHCCEEEEECCCC--CCCCEEEEEcC--CHHHHHHHHHH
Confidence 99888887655 455677877642 34677777 45689999997752 34689999998 89999999999
Q ss_pred HHHHHHHc
Q 019899 326 IQKVAETC 333 (334)
Q Consensus 326 l~~~~~~~ 333 (334)
|+++.+.+
T Consensus 348 l~~~~~~~ 355 (360)
T 3hdo_A 348 LKEIGEGH 355 (360)
T ss_dssp HHHHHC--
T ss_pred HHHHhccc
Confidence 99987653
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=280.92 Aligned_cols=286 Identities=17% Similarity=0.277 Sum_probs=231.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeC-CCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHC-RSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~-~~~~~~~~~~~~ 83 (334)
+++.+++.+++++++|++|+|+++++.+++.++. ||+|+++.|+|.++...++ ..|.+++.+++ ++.++ +++
T Consensus 55 lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~-~~g~~~~~v~~~~~~~~--~~~-- 127 (350)
T 3fkd_A 55 LRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACR-MYEHEVCFYPSNEDIGE--ADF-- 127 (350)
T ss_dssp HHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHH-HTTCEEEEEETTSCGGG--SCC--
T ss_pred HHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHH-HcCCeEEEEecCCcccc--Ccc--
Confidence 4444555566788999999999999999999987 9999999999999999998 89999999998 43333 333
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+ +++++++++|+||||.++|.+++.+|+++|.++ +||+||+|+.+.+.+.... ..+.. .
T Consensus 128 ------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~--~~~~~-----~ 186 (350)
T 3fkd_A 128 ------S------NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRP--ADIKG-----R 186 (350)
T ss_dssp ------T------TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCG--GGGTT-----C
T ss_pred ------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhh--HHhhc-----C
Confidence 2 789999999999999999988888888888755 9999999999887654322 22222 6
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
++++++.|+||.+|++|+|+||+++ ++++.+.++.....++.+++.+.++..+++..+ .+..+.++.. ++++++.
T Consensus 187 ~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~-~~~~~l~ 261 (350)
T 3fkd_A 187 KNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPA---QFTLPIRKWQ-RNTVDFI 261 (350)
T ss_dssp SSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTT---TTCCCHHHHH-HHHHHHH
T ss_pred CCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHH---HHHHHHHHHH-HHHHHHH
Confidence 8899999999999999999999999 999999999888888899999999998887643 1122233333 7788899
Q ss_pred HHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 244 AGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 244 ~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
+.|+++ ++++..+. +.++|++++.. +..++...|++++||.+.||..|+...++++|++++ ++++++++
T Consensus 262 ~~L~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l 331 (350)
T 3fkd_A 262 TALNRLDGVEVHPSG-TTFFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLF 331 (350)
T ss_dssp HHHHHSTTEEECCCS-SSEEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHH
T ss_pred HHHhcCCCcEECCCC-CcEEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHH
Confidence 999887 78775554 55667888753 346888886666899999999998666889999998 88899999
Q ss_pred HHHHHHHHHHc
Q 019899 323 IERIQKVAETC 333 (334)
Q Consensus 323 l~~l~~~~~~~ 333 (334)
++.|+++.++.
T Consensus 332 ~~al~~~~~~~ 342 (350)
T 3fkd_A 332 IKALETFLEKY 342 (350)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=279.55 Aligned_cols=285 Identities=15% Similarity=0.144 Sum_probs=227.2
Q ss_pred CCCcEEE--ecCcHHHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHH
Q 019899 16 DPSQIVL--TAGATPAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQA 91 (334)
Q Consensus 16 ~~~~i~~--~~g~~~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~ 91 (334)
++++|++ |+|+++++..++..+.. +||+|+++.|+|+++...++ ..|.+++.+++.+++++.+|++++++++++.
T Consensus 88 ~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 166 (394)
T 2ay1_A 88 KSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMN-FMGLPVQTYRYFDAETRGVDFEGMKADLAAA 166 (394)
T ss_dssp CGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-HHTCCEEEEECEETTTTEECHHHHHHHHHTC
T ss_pred CcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-HcCCceEEEecccccCCccCHHHHHHHHHhC
Confidence 6789999 99999999999987754 99999999999999999888 8899999999854466789999999999751
Q ss_pred HHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCC-CcchhhhhhhccccCCCcEEEEe
Q 019899 92 RKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE-EFVSMAEILEAEEVDKDRVHIIY 170 (334)
Q Consensus 92 ~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (334)
..+++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++. ...++..+... .++++++.
T Consensus 167 ---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~ 239 (394)
T 2ay1_A 167 ---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASR----IPEVLIAA 239 (394)
T ss_dssp ---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHH----CSSEEEEE
T ss_pred ---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhc----CCCEEEEE
Confidence 11367777899999999999999999999999999999999999998877531 12233333321 45789999
Q ss_pred cccccCCCCCceEEEEee--cCHHHHHH----HHHh-hccc-CCChHHHHHHHHhhCChH---HHHHHHHHHHHHHHHHH
Q 019899 171 GLSKDLSLPGFRTGVIYS--YNESVLAA----AKKL-TRFC-SISAPTQRLLISMLSDTK---FIQEYLETNKRRIKKLY 239 (334)
Q Consensus 171 s~sK~~~~~g~r~g~i~~--~~~~~~~~----~~~~-~~~~-~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~ 239 (334)
|+||.+|++|+|+||+++ +++++++. +... ...+ +.+++.+.++..+++..+ ...++..++++++++++
T Consensus 240 s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 319 (394)
T 2ay1_A 240 SCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLR 319 (394)
T ss_dssp ECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 46655433 3321 2233 458889998888887652 22456788889999999
Q ss_pred HHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 240 DSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 240 ~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++.+.|++.+ +++..+.+|+++|++++. +....+++++||.+.|| +|++++..+
T Consensus 320 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gi~v~~~----------~Ris~~~~~ 378 (394)
T 2ay1_A 320 EQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGD----------SRINIAGLN 378 (394)
T ss_dssp HHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCC
T ss_pred HHHHHHHHhcCCCCCeeEEcCCceEEEeeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEeecCC
Confidence 99999998874 777777889999987642 34456677799999874 599998669
Q ss_pred cccHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKV 329 (334)
Q Consensus 316 ~~~l~~~l~~l~~~ 329 (334)
++++++++++|+++
T Consensus 379 ~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 379 DNTIPILARAIIEV 392 (394)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHc
Confidence 99999999999875
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=278.52 Aligned_cols=282 Identities=15% Similarity=0.212 Sum_probs=216.1
Q ss_pred hhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCC----eEEecCCCCCChhhhhhhccCcEEEEEeCCCCCC
Q 019899 2 AGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGN----ALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDN 76 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~ 76 (334)
|+|+. ..+ +.+++ ++|++|+|+++++..++.+++++|| +|++++|+|+++...++ ..|.+++.++++. +
T Consensus 78 a~~~~-~~g--~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~-~~g~~~~~~~~d~-~- 151 (391)
T 3bwn_A 78 KDLHG-VVG--NAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETT-YVRSGMYKWEGDA-W- 151 (391)
T ss_dssp HHHHH-HHC--SBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHH-TTCBTTEEEEEES-T-
T ss_pred HHHHH-hcC--CCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHH-HcCCeEEEecCCH-H-
Confidence 45555 334 55666 5999999999999999999999999 99999999999999998 8999988888632 1
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
.+. . .+++++++++|+||||.+++ +|++.++.++++||+||+|.. + ...++..
T Consensus 152 -~l~--------~------~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~-~~~~l~~-- 204 (391)
T 3bwn_A 152 -GFD--------K------KGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----P-HYTPITR-- 204 (391)
T ss_dssp -TCC--------C------CSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----T-TTSCCCC--
T ss_pred -HcC--------C------CCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----C-CCCcccc--
Confidence 222 1 27899999999999999997 344422333499999999973 1 1112211
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChH-H------HHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTK-F------IQEY 227 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-~------~~~~ 227 (334)
..+++++++||||.+|++|+|+||++++++++++.+..... .++.+++.|.++..++.... + .+++
T Consensus 205 -----~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 279 (391)
T 3bwn_A 205 -----RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENF 279 (391)
T ss_dssp -----CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSH
T ss_pred -----CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHH
Confidence 15789999999999999999999999757889888887654 46789999999999886542 1 1456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCC-------------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEE
Q 019899 228 LETNKRRIKKLYDSFVAGLKQL-GIRCSES-------------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINV 293 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 293 (334)
+.+.++.++++++.+.+.|+++ ++++..+ .+|+|+|++++.. +.+..+++++||.+
T Consensus 280 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~----------~~~~~~l~~~gV~v 349 (391)
T 3bwn_A 280 FKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE----------TDLVSELRRHKVMS 349 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----------CCHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH----------HHHHHHHHHCCEEE
Confidence 7888999999999999999987 5655433 4456899998741 23444577799999
Q ss_pred cCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 294 TPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 294 ~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.||..|+. .++++|+|++ .+++++++++++|++++++.
T Consensus 350 ~pg~~fg~-~~~~iRis~~-~~~e~i~~~~~~L~~~~~~~ 387 (391)
T 3bwn_A 350 RAGERCGS-DKKHVRVSML-SREDVFNVFLERLANMKLIK 387 (391)
T ss_dssp EEGGGGTC-CTTEEEEESC-SCHHHHHHHHHHHHSCC---
T ss_pred ccCCCCCC-CCCEEEEEec-CCHHHHHHHHHHHHHHHHhh
Confidence 99999975 4689999999 58889999999999887653
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=267.01 Aligned_cols=261 Identities=18% Similarity=0.306 Sum_probs=214.1
Q ss_pred CCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 15 FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 15 ~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
+++++|++|+|+++++..++.++ ||+|+++ |+|+++...++ ..|.+++.+|++ +++.+|++++ +
T Consensus 74 ~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~l-----~---- 137 (335)
T 1uu1_A 74 LSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAK-AVGAKFLEVPLT--KDLRIPEVNV-----G---- 137 (335)
T ss_dssp CCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHH-HHTCEEEECCCC--TTSCCCCCCC-----C----
T ss_pred CCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHH-HcCCeEEEeccC--CCCCCCHHHc-----C----
Confidence 67889999999999999999998 8999999 99999999888 889999999873 4467888777 2
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
++++|++++|+||||.++|.+++++++++| | ++|+||+|+++.+. ..... +.. .++++++.|+||
T Consensus 138 --~~~~v~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~--~~~~~--~~~-----~~~~i~~~s~sK 202 (335)
T 1uu1_A 138 --EGDVVFIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHGE--SYVDF--LKK-----YENLAVIRTFSK 202 (335)
T ss_dssp --TTEEEEEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCC--CCGGG--GGT-----CSSEEEEEESTT
T ss_pred --CCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcch--hHHHH--hhh-----CCCEEEEecchh
Confidence 678999999999999999988888888777 7 89999999976542 11221 111 578899999999
Q ss_pred cCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 019899 175 DLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS 254 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 254 (334)
.+|++|+|+||+++ ++++++.++.....++.|++.+.++..+++.. +++.+.+++++++++++.+.|++.|+++.
T Consensus 203 ~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 277 (335)
T 1uu1_A 203 AFSLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYRIT 277 (335)
T ss_dssp TTTCGGGCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHTCCBC
T ss_pred hcCCcccCeEEEEe-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHCCcEEc
Confidence 99999999999999 89999999887777889999999999998763 34566778888999999999988787764
Q ss_pred CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHH
Q 019899 255 ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329 (334)
Q Consensus 255 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~ 329 (334)
+.+++++|++++. .+..++...|+ ++||.+.| .++++|++++ +++++++++++|+++
T Consensus 278 -~~~~~~~~~~~~~-------~~~~~~~~~l~-~~gi~v~~-------~~~~iRis~~--~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 278 -DSRGNFVFVFMEK-------EEKERLLEHLR-TKNVAVRS-------FREGVRITIG--KREENDMILRELEVF 334 (335)
T ss_dssp -CCCSSEEEEECCT-------HHHHHHHHHHH-HHTEEEEE-------ETTEEEEECC--CHHHHHHHHHHHHCC
T ss_pred -CCCCeEEEEECCC-------CCHHHHHHHHH-HCCEEEEE-------CCCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 4456788998874 13457888865 47999988 1468999997 567899999988754
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=263.18 Aligned_cols=292 Identities=15% Similarity=0.137 Sum_probs=229.8
Q ss_pred hhhhhhhhcCCCCCC-CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCcc
Q 019899 2 AGFMSQVLGQAVSFD-PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~ 78 (334)
++++.+.++ ++ ++++++|+|+++++..++.+++++||+|+++.|+|++ +...++ ..|.+++.++.+ .++.
T Consensus 59 ~~~la~~~g----~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~ 131 (386)
T 2dr1_A 59 VERLREFLE----VEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVE-SNGRKAVVLEYE--PGKA 131 (386)
T ss_dssp HHHHHHHHT----CSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEECC--TTCC
T ss_pred HHHHHHHhC----CCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHH-HhCCceEEEecC--CCCC
Confidence 345555544 34 6789999999999999999999999999999999998 777777 889999999984 4567
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|+++|++++++ ..++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+.+. .+ +..
T Consensus 132 ~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~----~~---~~~- 196 (386)
T 2dr1_A 132 VKPEDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD----IK---FDK- 196 (386)
T ss_dssp CCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC----CC---TTT-
T ss_pred CCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc----cc---ccc-
Confidence 999999999964 137899999999999999999 899999999999999999999875431 11 111
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH----------------Hh----hcccCCChHHHHHHHHhh
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK----------------KL----TRFCSISAPTQRLLISML 218 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~~~~~~l 218 (334)
.+.++++.|+||+++.+ .++||+++ ++++.+.++ .. ...++.+...+.++..++
T Consensus 197 ----~~~di~~~s~sK~~~~~-~g~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 270 (386)
T 2dr1_A 197 ----WGLDVVFSSSQKAFGVP-PGLAIGAF-SERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVAL 270 (386)
T ss_dssp ----TTCSEEEEETTSTTCCC-SSCEEEEE-CHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHH
T ss_pred ----cCCcEEEEeccccccCC-CceEEEEE-CHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHH
Confidence 46688999999999855 24899998 777777652 11 223466777888777776
Q ss_pred CChHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEE
Q 019899 219 SDTKFIQE--YLETNKRRIKKLYDSFVAGLKQLGIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINV 293 (334)
Q Consensus 219 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 293 (334)
+.. .+ .+.+.+++++++++++.+.|++.|+++..+. .+.++|++++... +..++...|++ +||.+
T Consensus 271 ~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v 340 (386)
T 2dr1_A 271 RII---EKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGI------KGDEVYEAMRK-RGFEL 340 (386)
T ss_dssp HHH---HHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTC------CHHHHHHHHHH-TTEEC
T ss_pred HHH---HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCC------CHHHHHHHHHH-CCeEE
Confidence 532 22 2567788899999999999998888877664 3667888887422 34678888666 59999
Q ss_pred cCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 294 TPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 294 ~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.||..+. .++++|++++. .+++++++++++|++++++.
T Consensus 341 ~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 341 AKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp EECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9988653 35799999986 69999999999999998763
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=265.67 Aligned_cols=289 Identities=15% Similarity=0.111 Sum_probs=226.9
Q ss_pred hhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 3 GFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+++.+.+ +++++ ++++|+|+++++..++.+++++||+|++++|+|++ +...++ ..|.+++.++++ .++.+
T Consensus 74 ~~la~~~----g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~ 146 (393)
T 1vjo_A 74 SLLRYVW----QTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG-RYGADVRTISKP--WGEVF 146 (393)
T ss_dssp HHHHHHH----TCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEECC--TTCCC
T ss_pred HHHHHHh----CCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHH-HcCCceEEEecC--CCCCC
Confidence 4455444 45677 89999999999999999999999999999999998 888877 889999999984 35679
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|+++|++++++. +++++++++|+||||.+.+ +++|.++|+++|+++|+|++|+.. .....+ ..
T Consensus 147 d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g----~~~~~~---~~-- 209 (393)
T 1vjo_A 147 SLEELRTALETH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTSLG----GVPIFL---DA-- 209 (393)
T ss_dssp CHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTTT----TSCCCT---TT--
T ss_pred CHHHHHHHHhhC-----CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcccc----CcCCcc---cc--
Confidence 999999999864 6889999999999999999 889999999999999999999831 111121 11
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh---------------------hccc-CCChHHHHHHHHh
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL---------------------TRFC-SISAPTQRLLISM 217 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~~~ 217 (334)
.+.++++.|+||+++.++ |+||+++ ++++.+.++.. ...+ +.+.+.+.++..+
T Consensus 210 ---~~~di~~~s~sK~l~~~~-~~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~a 284 (393)
T 1vjo_A 210 ---WGVDLAYSCSQKGLGCSP-GASPFTM-SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREA 284 (393)
T ss_dssp ---TTCSEEECCSSSTTCSCS-SCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHH
T ss_pred ---cCccEEEEcCcccccCCC-ceEEEEE-CHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHH
Confidence 466788999999998676 9999999 78888777532 1122 5677888888877
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 218 LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSA---GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
++... +.++.+.+++++++++++.+.|++.|+++..+.+ +.++++.+|... +..++...|++++||.+.
T Consensus 285 l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~ 356 (393)
T 1vjo_A 285 LRLIA--QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGV------DGKAVARRLLNEHNIEVG 356 (393)
T ss_dssp HHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTC------CHHHHHHHHHHHHCEECE
T ss_pred HHHHH--HccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCC------CHHHHHHHHHhhCCEEEe
Confidence 75421 3346778889999999999999988888776654 345667776422 346788886665599999
Q ss_pred CCCCcCCCCCCeEEEEe-cC-CCcccHHHHHHHHHHHH
Q 019899 295 PGSACHCIEPGWFRCCF-TS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 295 ~g~~~~~~~~~~iRi~~-~~-~~~~~l~~~l~~l~~~~ 330 (334)
||..+. .++++|+++ +. .+++++++++++|++++
T Consensus 357 ~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 357 GGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp ECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 998764 368999995 33 46668999999999876
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=279.08 Aligned_cols=283 Identities=16% Similarity=0.181 Sum_probs=224.7
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh--------cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL--------ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~ 73 (334)
|+|+.++.+ ..+++++|++|+|+++++.+++.++ +++||+|+++.|+|+.+...++ ..|.+++.+
T Consensus 110 a~~~~~~~~--~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-~~g~~~~~~---- 182 (427)
T 2hox_A 110 KELHEVVGN--AAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK-YFDKKGYVW---- 182 (427)
T ss_dssp HHHHHHHTC--BCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHH-HSCBTTEEE----
T ss_pred HHHHHHhCC--cCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHH-HcCCeeeee----
Confidence 455554322 4468899999999999999999999 8999999999999999999998 888876643
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
.+|++.|++++++ +++++++++|+||||.+++ +.+ + ++..+.|++|.. ...++.
T Consensus 183 ----~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~~------~~~s~~ 236 (427)
T 2hox_A 183 ----AGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-AVI-------K--GCKSIYDMVYYW------PHYTPI 236 (427)
T ss_dssp ----EEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-CSS-------T--TCEEEEECTTCS------TTTSCC
T ss_pred ----cCCHHHHHHhhcC------CceEEEEcCCCCCcccccH-HHH-------c--CCCEEEeecccC------CCCCcc
Confidence 4578888887765 7899999999999999999 422 2 556777776632 122222
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCCh-HHH------
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDT-KFI------ 224 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~~------ 224 (334)
.+ ..++++++.||||.+|++|+|+||++++++++++.+++.... ++++++.|.++..++... +++
T Consensus 237 ~~------~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~ 310 (427)
T 2hox_A 237 KY------KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGT 310 (427)
T ss_dssp CS------CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cc------CCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccch
Confidence 22 157889999999999999999999999668999999876554 568889999888888653 222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhC-CCcc--------------cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHh
Q 019899 225 -QEYLETNKRRIKKLYDSFVAGLKQL-GIRC--------------SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNI 288 (334)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (334)
++++.+.+++++++++++.+.|++. |+.+ ..|.+++|+|++++. +..+++..++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~ 382 (427)
T 2hox_A 311 MRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--------EEDKDCYQTFQN 382 (427)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--------GGGCSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--------cHHHHHHHHHHH
Confidence 3566778889999999999999987 6554 245679999999975 124677887878
Q ss_pred cCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 289 AKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 289 ~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+||.+.||..|+. .++++|+|++ .+++++++++++|++++++.
T Consensus 383 ~gI~v~pg~~f~~-~~~~~Ris~~-~~~e~l~~~l~~l~~~~~~~ 425 (427)
T 2hox_A 383 GRINTQNGVGFEA-SSRYVRLSLI-KTQDDFDQLMYYLKDMVKAK 425 (427)
T ss_dssp TTEECEEGGGGTS-CTTEEEEECS-SCHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEcCCCccCC-CCCEEEEEec-CCHHHHHHHHHHHHHHHhhc
Confidence 9999999999976 5789999999 58889999999999998654
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=260.17 Aligned_cols=282 Identities=17% Similarity=0.122 Sum_probs=222.3
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCc
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVK 97 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 97 (334)
+++++|+|+++++..++.+++++||.|+++.|+|+++...++ ..|.+++.++. +|++++++++++... ++
T Consensus 104 ~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~-~~g~~~~~v~~-------~d~~~l~~~l~~~~~--~~ 173 (398)
T 3a2b_A 104 EAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSR-LSFSKVIKYGH-------NNMEDLRAKLSRLPE--DS 173 (398)
T ss_dssp SEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHH-HSSSEEEEECT-------TCHHHHHHHHHTSCS--SS
T ss_pred CcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHH-HcCCceEEeCC-------CCHHHHHHHHHhhcc--CC
Confidence 689999999999999999999999999999999999999998 89999999985 578999998875210 16
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCc-EEEEecccccC
Q 019899 98 VRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR-VHIIYGLSKDL 176 (334)
Q Consensus 98 ~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~sK~~ 176 (334)
+++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+.+.++.. ..++....+ . .++ +++++|+||.+
T Consensus 174 ~~~v~~~~~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~---~-~~~~di~~~s~sK~~ 245 (398)
T 3a2b_A 174 AKLICTDGIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK-GAGTASHFG---L-NDDVDLIMGTFSKSL 245 (398)
T ss_dssp CEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG-GCCHHHHHT---C-GGGCSEEEEESSSTT
T ss_pred ceEEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC-CCchHhhcC---C-CcCCeEEEecccccc
Confidence 889999999999999999 99999999999999999999998766321 122222211 1 234 68999999999
Q ss_pred CCCCceEEEEeecCHHHHHHHHHh-hc--ccCCChHHHH-HHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 019899 177 SLPGFRTGVIYSYNESVLAAAKKL-TR--FCSISAPTQR-LLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIR 252 (334)
Q Consensus 177 ~~~g~r~g~i~~~~~~~~~~~~~~-~~--~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 252 (334)
+++| ||+++ ++++++.+... .. ..+.+++.+. ++..+++.. ++..+.+++++++++++.+.|++.|++
T Consensus 246 ~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~ 317 (398)
T 3a2b_A 246 ASLG---GFVAG-DADVIDFLKHNARSVMFSASMTPASVASTLKALEII----QNEPEHIEKLWKNTDYAKAQLLDHGFD 317 (398)
T ss_dssp CSSC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH----HHCTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCC---cEEEe-CHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9767 99998 78888888764 22 2234455555 344555432 234677888999999999999988888
Q ss_pred ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 253 CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+..+. |+++|+.++.. .+..++...|++ +||.+.||..|+.. .++++|++++. .+++++++++++|++++
T Consensus 318 ~~~~~-g~~~~~~~~~~------~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l 389 (398)
T 3a2b_A 318 LGATE-SPILPIFIRSN------EKTFWVTKMLQD-DGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVF 389 (398)
T ss_dssp BCSCC-SSEEEEECCCH------HHHHHHHHHHHH-TTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCC-CCEEEEEcCCH------HHHHHHHHHHHH-CCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 77665 67888988642 245678888666 59999999887532 35789999996 59999999999999998
Q ss_pred HHc
Q 019899 331 ETC 333 (334)
Q Consensus 331 ~~~ 333 (334)
+++
T Consensus 390 ~~~ 392 (398)
T 3a2b_A 390 KQA 392 (398)
T ss_dssp HHC
T ss_pred HHh
Confidence 865
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=265.74 Aligned_cols=284 Identities=18% Similarity=0.200 Sum_probs=217.9
Q ss_pred EEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCChhhhhhhccCcE-EEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 20 IVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGFDRDIRFRTGVE-LIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 20 i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~~~~~~~~~g~~-v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
.+-|.|+|.|+...+..+ .++||+|++++|+|++|...++ ..|.+ +..++..+++.+.+|.+.+.+.++..
T Consensus 112 ~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~-~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~--- 187 (420)
T 4h51_A 112 AVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVK-AAGWKNICTYAYYDPKTVSLNFEGMKKDILAA--- 187 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHH-HTTCCCEEEEECEEGGGTEECHHHHHHHHHHS---
T ss_pred eeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHH-HcCCeEEEeeccccccccCCCHHHHHHHHhcc---
Confidence 445788888887666554 4799999999999999999999 88876 55666655677788999998888653
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc--hhhhhhhccccCCCcEEEEecc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV--SMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
..+++++++++|+||||.+++.+++++|+++|+++++++++|++|++|.+++.... ....... ...+++++.||
T Consensus 188 ~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~ 263 (420)
T 4h51_A 188 PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFAR----RGIEVLLAQSF 263 (420)
T ss_dssp CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----TTCCCEEEEEC
T ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHh----hCceEEEEecc
Confidence 34667788888999999999999999999999999999999999999988643221 1222222 15778999999
Q ss_pred cccCCCCCceEEEEeecCHHH--HH----HHHHh--hcccCCChHHHHHHHHhhCChHHH---HHHHHHHHHHHHHHHHH
Q 019899 173 SKDLSLPGFRTGVIYSYNESV--LA----AAKKL--TRFCSISAPTQRLLISMLSDTKFI---QEYLETNKRRIKKLYDS 241 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~~~~~~--~~----~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~ 241 (334)
||.++++|+|+||++++.+.. .. .+... ....+.+...+.++..++.+.... ++.+..++++++++++.
T Consensus 264 SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~ 343 (420)
T 4h51_A 264 SKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRT 343 (420)
T ss_dssp TTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998743321 12 22221 233466778888888888775432 44567889999999999
Q ss_pred HHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 242 FVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 242 ~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+.+.|++.| |....+.+|||.|..+++ +.++. |+++||.+.|+. |||++.++++
T Consensus 344 l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~-----------e~v~~-L~e~~Vy~~~~g----------Ris~Agl~~~ 401 (420)
T 4h51_A 344 VYDELLRLQTPGSWEHVINQIGMFSFLGLSK-----------AQCEY-CQNHNIFITVSG----------RANMAGLTHE 401 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHCCSSEEECCCCH-----------HHHHH-HHHTTEECCTTC----------EEEGGGCCHH
T ss_pred HHHHHHHhCCCCCCCeecCCCceEEecCcCH-----------HHHHH-HHhCCEEEcCCC----------EEEeccCCHH
Confidence 999999875 444567789999876542 44444 678999988753 9999888999
Q ss_pred cHHHHHHHHHHHHHHc
Q 019899 318 DIPLVIERIQKVAETC 333 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~ 333 (334)
+++++.++|.+++++.
T Consensus 402 ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 402 TALMLAQTINDAVRNV 417 (420)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998763
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=256.68 Aligned_cols=285 Identities=13% Similarity=0.062 Sum_probs=222.3
Q ss_pred CCCCCCc-EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHH
Q 019899 13 VSFDPSQ-IVLTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFN 89 (334)
Q Consensus 13 ~~~~~~~-i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~ 89 (334)
++.+.++ +++++|+++++..++.+++++||+|+++.|+|++ +...++ ..|.+++.+++ +.++.+|+++++++++
T Consensus 59 ~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~--~~~~~~d~~~l~~~i~ 135 (411)
T 3nnk_A 59 FRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIAR-RCRAEVHTIEV--PWGEVFTPDQVEDAVK 135 (411)
T ss_dssp HTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-HTTCEEEEEEC--CTTCCCCHHHHHHHHH
T ss_pred hCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHH-HcCCeEEEEec--CCCCCCCHHHHHHHHh
Confidence 3455565 7888899999999999999999999999999987 777777 88999999998 4556789999999998
Q ss_pred HHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEE
Q 019899 90 QARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 90 ~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
+. ++++|++++|+||||.+.| +++|.++|++||+++|+|++++.... ..... ..+.++++
T Consensus 136 ~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~--------~~~~d~~~ 195 (411)
T 3nnk_A 136 RI-----RPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGN----PLETD--------VWGLDAVS 195 (411)
T ss_dssp HH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTB----CCCTT--------TTTCSEEE
T ss_pred hC-----CCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCc----ccchh--------ccCCcEEE
Confidence 64 7899999999999999999 88999999999999999999865221 11111 14567889
Q ss_pred ecccccCCCCCceEEEEeecCHHHHHHHHHhh--------------------------------------cccCCChHHH
Q 019899 170 YGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--------------------------------------RFCSISAPTQ 211 (334)
Q Consensus 170 ~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~ 211 (334)
.|++|+++ .+.++|++++ ++++.+.++... ..++.+...+
T Consensus 196 ~s~~K~l~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (411)
T 3nnk_A 196 AGMQKCLG-GPSGTSPITL-SARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTAL 273 (411)
T ss_dssp CCSTTTTC-CCSSEEEEEE-CHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHH
T ss_pred ecCccccC-CCCceEEEEE-CHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHH
Confidence 99999864 3446899998 888888887543 1134455666
Q ss_pred HHHHHhhCChHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---eeEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 212 RLLISMLSDTKFIQEY-LETNKRRIKKLYDSFVAGLKQLGIRCSESSA---GLYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 212 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
.++..++.. ..+. +.+..++++++++++.+.|++.|+++..+.+ +.++++.+|... +..++...|++
T Consensus 274 ~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~ 344 (411)
T 3nnk_A 274 FGARECARL---ILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGI------NGDQARKLMLE 344 (411)
T ss_dssp HHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTC------CHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCC------CHHHHHHHHHH
Confidence 666555543 2333 6778889999999999999998888776543 567788887532 34678888777
Q ss_pred hcCeEEcCCCCcCCCCCCeEEEEe-cC-CCcccHHHHHHHHHHHHHHc
Q 019899 288 IAKINVTPGSACHCIEPGWFRCCF-TS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 288 ~~gi~v~~g~~~~~~~~~~iRi~~-~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++||.+.||.. ...++++|+++ +. .+++++++++++|++++++.
T Consensus 345 ~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 345 DFGIEIGTSFG--PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp HHSEEEEECCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred hcCeEEeCccC--CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 67999998853 23467999998 54 47999999999999998764
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=252.69 Aligned_cols=286 Identities=16% Similarity=0.125 Sum_probs=219.6
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCce
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKV 98 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 98 (334)
+.++++++++++..++.+++++||.|+++.|+|+++...++ ..|.+++.++. +|++++++++++....+.++
T Consensus 105 ~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~-~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~ 176 (399)
T 3tqx_A 105 DTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIR-LCKAQRYRYKN-------NAMGDLEAKLKEADEKGARF 176 (399)
T ss_dssp EEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-SCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSS
T ss_pred cEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHH-HcCCceeEeCC-------CCHHHHHHHHHhhhccCCCc
Confidence 34444555889999999999999999999999999999998 89999999984 47889999998765544578
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCC
Q 019899 99 RGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSL 178 (334)
Q Consensus 99 ~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~ 178 (334)
++|++++|+||||.++| +++|.++|+++|+++|+||+|+...++... .+...... ...+.++++.|+||+++
T Consensus 177 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~---~~~~~di~~~s~sK~~~- 248 (399)
T 3tqx_A 177 KLIATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENG-RGTPEYCG---VADRVDILTGTLGKALG- 248 (399)
T ss_dssp EEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-CCHHHHHT---CTTCCSEEEEESSSSSC-
T ss_pred eEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCC-CchHHhhC---CCCCCcEEEecchHhcc-
Confidence 99999999999999999 999999999999999999999743333221 12222221 11356789999999997
Q ss_pred CCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 019899 179 PGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS 254 (334)
Q Consensus 179 ~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 254 (334)
|++.||+++ ++++++.+...... .+.++..+.++...++.. .++..+.+++++++++++.+.|++.|+++.
T Consensus 249 -g~~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 323 (399)
T 3tqx_A 249 -GASGGYTSG-HKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL---KTEGPQLRKQLQENSRYFRAGMEKLGFQLV 323 (399)
T ss_dssp -SSCCEEEEE-CHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHHTCCBC
T ss_pred -cCceEEEEc-CHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 334499998 88888888765332 245556666665555432 244678888999999999999999898887
Q ss_pred CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC-CCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 255 ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH-CIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 255 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.+. +.++|+.++.. .+..++...|++ +||.+.|+.+++ ...++++|++++. .+++++++++++|++++++
T Consensus 324 ~~~-~~~~~~~~~~~------~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 324 PGN-HPIIPVMLGDA------QLATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp CCS-SSEEEEEEECH------HHHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCEEEEEeCCH------HHHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 554 45577787653 245678888666 799999876543 2235799999984 6999999999999999987
Q ss_pred c
Q 019899 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
.
T Consensus 396 ~ 396 (399)
T 3tqx_A 396 L 396 (399)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=253.67 Aligned_cols=283 Identities=14% Similarity=0.160 Sum_probs=218.1
Q ss_pred CCCCCC--CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCccccHHHHHHH
Q 019899 12 AVSFDP--SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFAFSITALDQA 87 (334)
Q Consensus 12 ~~~~~~--~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~ 87 (334)
.+++++ +++++|+|+++++. ++..++++||+|++++|+|++ +...++ ..|.+++.++++ .++.+|+++++++
T Consensus 47 ~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~l~~~ 122 (384)
T 3zrp_A 47 VMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFK-RYPVNVKVLRPS--PGDYVKPGEVEEE 122 (384)
T ss_dssp HHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHT-TSSCEEEEECCS--TTCCCCHHHHHHH
T ss_pred HhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHH-HcCCcEEEecCC--CCCCCCHHHHHHH
Confidence 344555 88999999999999 999999999999999999965 445556 789999999984 3557999999999
Q ss_pred HHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEE
Q 019899 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVH 167 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (334)
+++. ++++|++++|+||||.+.| +++|.++|++||+++|+|++|+.... ..+.. . .+.++
T Consensus 123 i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~~~~~---~-----~~~d~ 182 (384)
T 3zrp_A 123 VRKS-----EYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVGAE----EVKAE---E-----WNVDV 182 (384)
T ss_dssp HHHS-----CEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTTTS----CCCTT---T-----TTCSE
T ss_pred HHhC-----CCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccccCc----ccccc---c-----cCCCE
Confidence 9873 6899999999999999999 88999999999999999999875322 11111 1 45678
Q ss_pred EEecccccCCCCCceEEEEeecCHHHHHHH-------------HHhh-----------ccc-CCChHHHHHHHHhhCChH
Q 019899 168 IIYGLSKDLSLPGFRTGVIYSYNESVLAAA-------------KKLT-----------RFC-SISAPTQRLLISMLSDTK 222 (334)
Q Consensus 168 ~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~-------------~~~~-----------~~~-~~~~~~~~~~~~~l~~~~ 222 (334)
++.|+||+++ .+.++|++++ ++++.+.+ .... ..+ +.+...+.++..++...+
T Consensus 183 ~~~s~~K~~~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~ 260 (384)
T 3zrp_A 183 YLTASQKALG-SAAGLGLLLL-SPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIE 260 (384)
T ss_dssp EEEETTSTTC-CCSSEEEEEE-CHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred EEecCccccc-CCCceEEEEE-CHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHH
Confidence 8999999985 3345899998 77776666 2111 112 445556666655554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS----AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+..+.+++++++++++++.+.|++.|+++..+. .+.++|+.++. . +..++.+.|.+ +||.+.+|..
T Consensus 261 --~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~l~~-~gi~v~~g~~ 330 (384)
T 3zrp_A 261 --KEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-A------DPQKVLAGTVN-EGVEFAPGVH 330 (384)
T ss_dssp --HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-S------CHHHHHHHHHT-TTCCCEECCC
T ss_pred --hcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-C------CHHHHHHHHHH-CCEEEecCCC
Confidence 223577888899999999999999888877665 46777888876 2 34678888555 6999998875
Q ss_pred cCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 299 CHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.. +++|++++. .+++++++++++|++++++.
T Consensus 331 ~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 331 PAF---KYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp TTC---CEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCc---CEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 432 899999875 68999999999999998764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-34 Score=255.42 Aligned_cols=294 Identities=13% Similarity=0.104 Sum_probs=223.9
Q ss_pred hhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh--hhhhhccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD--RDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+++.+++.++.+++ +|++|+|+++++..++.+++++||+|+++.|+|+++. ..++ ..|.+++.++++ .++.+|+
T Consensus 56 l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~ 132 (396)
T 2ch1_A 56 VKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSE-RYGADVRTIEGP--PDRPFSL 132 (396)
T ss_dssp HHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEECC--TTSCCCH
T ss_pred HHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHH-HcCCceEEecCC--CCCCCCH
Confidence 34444455566777 8999999999999999999999999999999999884 3556 789999999984 4567999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++. ++++|++++|+||||.++| +++|.++|+++|++||+|++|+.. ....++. .
T Consensus 133 ~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~~g----~~~~~~~---~---- 193 (396)
T 2ch1_A 133 ETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASLC----GVPFYMD---K---- 193 (396)
T ss_dssp HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBT----TBCCCTT---T----
T ss_pred HHHHHHHHhC-----CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccccc----CCccchh---h----
Confidence 9999999864 6899999999999999999 889999999999999999999842 1111211 1
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-------------------------cccCCChHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-------------------------RFCSISAPTQRLLIS 216 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 216 (334)
.+.++++.|++|+++ .+.++|++++ ++++++.+.... ..++.+...+.++..
T Consensus 194 -~~~d~~~~s~~K~~~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 270 (396)
T 2ch1_A 194 -WEIDAVYTGAQKVLG-APPGITPISI-SPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALRE 270 (396)
T ss_dssp -TTCCEEECCCC-CCC-CCSSCEEEEE-CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHH
T ss_pred -cCcCEEEEcCCcccc-CCCCeEEEEE-CHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHH
Confidence 344567789999875 3345699998 777777765310 113456667777666
Q ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCce----eEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE
Q 019899 217 MLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAG----LYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
++... .++.+.+.+++++++++++.+.|+++|+++..+.++ .++++.++... +..++.+.|++++||.
T Consensus 271 al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~~gi~ 342 (396)
T 2ch1_A 271 ALAQI--AEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGV------DWWKVSQYAMNNFSLE 342 (396)
T ss_dssp HHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCBC
T ss_pred HHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCC------CHHHHHHHHHHhCCEE
Confidence 66432 134467788889999999999999888888776553 36777876422 3467888877767999
Q ss_pred EcCCCCcCCCCCCeEEEEe-cC-CCcccHHHHHHHHHHHHHHc
Q 019899 293 VTPGSACHCIEPGWFRCCF-TS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 293 v~~g~~~~~~~~~~iRi~~-~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.+|..+. .++++|+++ +. .+++++++++++|++++++.
T Consensus 343 v~~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 343 VQGGLGPT--FGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp CBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred EecCcccc--CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 99887543 368999999 43 58899999999999998764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=258.73 Aligned_cols=291 Identities=17% Similarity=0.190 Sum_probs=218.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----CCCCeEEecCCCCCChhhhh---hhccCcEEEEEeCCCCCCc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----DHGNALLVPSPYYPGFDRDI---RFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~---~~~~g~~v~~v~~~~~~~~ 77 (334)
+++.+++.+++++++|++|+|+++++..++.++. ++||+|+++.|+|+++...+ + ..|.+++.++++ .++
T Consensus 49 l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~ 125 (384)
T 1eg5_A 49 AREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLS-MKGFKVKYVPVD--SRG 125 (384)
T ss_dssp HHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHH-HTTCEEEECCBC--TTS
T ss_pred HHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHH-hcCCEEEEEccC--CCC
Confidence 3444444455778899999999999999999997 79999999999999887766 5 679999999984 456
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC--cEEEEeccccccccCCCCcchhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN--IHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~--~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
.+|+++|++++++ ++++|++++|+||||.++| +++|.++|+++| ++||+|++|+. +. ...++
T Consensus 126 ~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~~---~~-~~~~~--- 189 (384)
T 1eg5_A 126 VVKLEELEKLVDE------DTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQTI---GK-IPFSL--- 189 (384)
T ss_dssp CBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTTT---TT-SCCCC---
T ss_pred ccCHHHHHHHhCC------CCeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhhc---CC-cccCc---
Confidence 7999999999875 7899999999999999999 899999999999 99999999973 21 11121
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHH--HHHHHHh-----hcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV--LAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
.. .+.++++.|+||.+|++| +||+++ ++++ ...+... ...++.+.+.+.++..+++.. .+++
T Consensus 190 ~~-----~~~di~~~s~sK~~g~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~ 258 (384)
T 1eg5_A 190 EK-----LEVDYASFSAHKFHGPKG--VGITYI-RKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA---VEEL 258 (384)
T ss_dssp TT-----TCCSEEEEEGGGGTSCTT--CEEEEE-CTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH---HHTH
T ss_pred hh-----cCCCEEEecHHHhcCCCc--eEEEEE-cCCCccccccccCcccccccCCCCChHHHHHHHHHHHHH---HHhH
Confidence 11 356788999999998778 699998 4443 2222111 133567788888777777542 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCc---eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC---
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLGIRCSESSA---GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--- 302 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--- 302 (334)
.+.+++++++++++.+.|++.|+++..+.. +.++++.++.. +..++.+.| .++||.+.+|..|+..
T Consensus 259 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l-~~~gi~v~~g~~~~~~~~~ 330 (384)
T 1eg5_A 259 SEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNLL-SGYGIYVSTSSACTSKDER 330 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHH-HHTTEECBC----------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHH-hhCCeEEeccccccCCCCc
Confidence 778889999999999999888887765431 33566666532 345777774 5689999999877532
Q ss_pred --------------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 --------------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 --------------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.++++|++++. .+++++++++++|++++++.
T Consensus 331 ~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 331 LRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp --CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 13689999985 69999999999999998865
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=252.10 Aligned_cols=293 Identities=15% Similarity=0.089 Sum_probs=223.7
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
++.+++.++++ +.+ +++++++++..++.+++++||.|+++.|+|+++...++ ..|.+++.++. .|+++++
T Consensus 96 ~~~la~~~g~~-~~i-~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-~~g~~~~~~~~-------~d~~~l~ 165 (401)
T 1fc4_A 96 EQKLAAFLGME-DAI-LYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVR-LCKAKRYRYAN-------NDMQELE 165 (401)
T ss_dssp HHHHHHHHTCS-EEE-EESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-TSCSEEEEECT-------TCHHHHH
T ss_pred HHHHHHHhCCC-cEE-EeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHH-HcCCceEEECC-------CCHHHHH
Confidence 33344444444 445 45555779999999999999999999999998888888 89999998873 4789999
Q ss_pred HHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccc-cccc-CCCCcchhhhhhhccccCC
Q 019899 86 QAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYG-GSIF-GNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++....+.++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ ++.+ .+....+...+ ..
T Consensus 166 ~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~------~~ 236 (401)
T 1fc4_A 166 ARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV------MG 236 (401)
T ss_dssp HHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC------TT
T ss_pred HHHHHhhccCCCceEEEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC------Cc
Confidence 999865433336889999999999999999 9999999999999999999996 6653 33332222222 24
Q ss_pred CcEEEEecccccC-CCCCceEEEEeecCHHHHHHHHHhhc----ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKKLTR----FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 164 ~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
+.++++.|+||.+ ++.| ||+++ ++++++.+..... .++.++..+.++...++.. ++ ..+.+++++++
T Consensus 237 ~~di~~~s~sK~~~~~~g---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~~ 308 (401)
T 1fc4_A 237 RVDIITGTLGKALGGASG---GYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV---EA-GSELRDRLWAN 308 (401)
T ss_dssp CCSEEEEESSSTTCSSSC---EEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH---HT-CHHHHHHHHHH
T ss_pred CCcEEEecchhhccCCCC---EEEEc-CHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHH
Confidence 5678999999999 5444 99998 8898888876432 2367788888877776432 11 35677888899
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~ 316 (334)
++++.+.|++.|+++. +..+.++|++++.. .+..++...|.+ +||.+.|+..|+.. .++++|++++. .++
T Consensus 309 ~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~------~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~ 380 (401)
T 1fc4_A 309 ARQFREQMSAAGFTLA-GADHAIIPVMLGDA------VVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTP 380 (401)
T ss_dssp HHHHHHHHHHTTCCBC-CSSSSEEEEEEECH------HHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCH
T ss_pred HHHHHHHHHHcCCccc-CCCCCEEEEEcCCh------HHHHHHHHHHHH-CCcEEeeecCCCCCCCCceEEEEeCCCCCH
Confidence 9999999998888876 45677788888642 244678888555 69999998877543 24689999985 699
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+++++++++|++++++.
T Consensus 381 ~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 381 EQITRAVEAFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998865
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=251.66 Aligned_cols=292 Identities=16% Similarity=0.151 Sum_probs=223.7
Q ss_pred hhhhcCCCCCCCCcEE-EecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 6 SQVLGQAVSFDPSQIV-LTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~-~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
++.+++.+++++++++ +++|+++++..++.+++++||+|++++|+|++ +...++ ..|.+++.++++ .++.+|++
T Consensus 50 ~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~ 126 (416)
T 3isl_A 50 MEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAE-RYGANVHMLECE--WGTVFDPE 126 (416)
T ss_dssp HHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEECC--TTCCCCHH
T ss_pred HHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHH-hcCCeeEEEecC--CCCCCCHH
Confidence 3444444556777666 88889999999999999999999999999987 656677 789999999984 44578999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++++++++. ++++|++++|+||||.+.| +++|.++|++||+++|+|++|+.... ..... .
T Consensus 127 ~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~~~~~---~----- 186 (416)
T 3isl_A 127 DIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC----EVKVD---E----- 186 (416)
T ss_dssp HHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS----CCCTT---T-----
T ss_pred HHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC----Ccchh---h-----
Confidence 999999843 7899999999999999999 88999999999999999999874221 11111 1
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh----------------------------------------c
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT----------------------------------------R 202 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~----------------------------------------~ 202 (334)
.+.++++.|++|+++ .+.++|++++ ++++.+.+.... .
T Consensus 187 ~~~d~~~~s~~K~l~-g~~g~g~~~~-~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 264 (416)
T 3isl_A 187 WKIDAAIGGTQKCLS-VPSGMAPITY-NERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLN 264 (416)
T ss_dssp TTCSEEECCSSSTTC-CCSSEEEEEE-CHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCC
T ss_pred cCCCEEEecCccccC-CCCCeEEEEE-CHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCC
Confidence 456788999999864 3445899998 888887776321 1
Q ss_pred ccCCChHHHHHHHHhhCChHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---eeEEeeecCCcCCCCChhhH
Q 019899 203 FCSISAPTQRLLISMLSDTKFIQEY-LETNKRRIKKLYDSFVAGLKQLGIRCSESSA---GLYCWADMSGLIPSYSEKGE 278 (334)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~ 278 (334)
.++.+...+.++..++.. ..++ +++.++++.++++++.+.|++.|+++..+.+ +.++++.+|... +.
T Consensus 265 ~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~ 335 (416)
T 3isl_A 265 HHTEATTMLYALREGVRL---VLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGI------DG 335 (416)
T ss_dssp SSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTC------CH
T ss_pred CCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCC------CH
Confidence 224455666666665543 2333 6788889999999999999998888776654 566778886432 34
Q ss_pred HHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCccc-HHHHHHHHHHHHHHc
Q 019899 279 LELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHED-IPLVIERIQKVAETC 333 (334)
Q Consensus 279 ~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~-l~~~l~~l~~~~~~~ 333 (334)
.++.+.|++++||.+.+|... ..++++|++++. .++++ +++++++|+++++++
T Consensus 336 ~~l~~~L~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 336 ESVRDMLLAQFGIEIASSFGP--LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHHHHHHHHHCEECBCCCST--TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEecCCCC--CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 688888777669999988742 346899999953 46666 999999999998865
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=251.03 Aligned_cols=289 Identities=14% Similarity=0.112 Sum_probs=218.7
Q ss_pred hcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh--hhhhhccCcEEEEEeCCCCCCccccHHHHH
Q 019899 9 LGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD--RDIRFRTGVELIPVHCRSTDNFAFSITALD 85 (334)
Q Consensus 9 ~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~ 85 (334)
+++.++++++ +|++|+|+++++..++.+++++||+|+++.|+|+++. ..++ ..|.+++.++++ .++.+|+++++
T Consensus 61 la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~l~ 137 (393)
T 2huf_A 61 VRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMAT-RYGADVRVVKSK--VGQSLSLDEIR 137 (393)
T ss_dssp HHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEECC--TTCCCCHHHHH
T ss_pred HHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHH-HcCCeeEEEeCC--CCCCCCHHHHH
Confidence 3333445665 8999999999999999999999999999999998742 2334 579999999984 34579999999
Q ss_pred HHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCc
Q 019899 86 QAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDR 165 (334)
Q Consensus 86 ~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (334)
+++++. ++++|++++|+||||.++| +++|.++|+++|+++|+|++++.. ..... +.. .+.
T Consensus 138 ~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~~----~~~~~---~~~-----~~~ 197 (393)
T 2huf_A 138 DALLIH-----KPSVLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASLG----GAPMF---MDR-----WEI 197 (393)
T ss_dssp HHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBT----TBCCC---TTT-----TTC
T ss_pred HHHhcc-----CCcEEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEcccccC----CCCcc---hhh-----cCc
Confidence 999863 6899999999999999999 889999999999999999997642 11111 111 456
Q ss_pred EEEEecccccC-CCCCceEEEEeecCHHHHHHHHHhh----cc---------------------cCCChHHHHHHHHhhC
Q 019899 166 VHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKKLT----RF---------------------CSISAPTQRLLISMLS 219 (334)
Q Consensus 166 ~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~~~----~~---------------------~~~~~~~~~~~~~~l~ 219 (334)
++++.|+||++ |++|+ ||+++ ++++.+.++... .. ++.+...+.++..+++
T Consensus 198 d~~~~s~sK~l~g~~G~--G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 274 (393)
T 2huf_A 198 DAMYTGSQKVLGAPPGI--TPVSF-SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIA 274 (393)
T ss_dssp SEEECCSSSTTCCCSSC--EEEEE-CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHH
T ss_pred cEEEECCCcccccCCCe--EEEEE-CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHH
Confidence 78899999985 56676 99998 788888887531 10 1334555555555553
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
... +..+.+..++++++++++.+.|++.|+++..+. .+++++++++... +..++...|++++||.+.+|
T Consensus 275 ~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~~gi~v~~g 346 (393)
T 2huf_A 275 MAC--EEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGV------DWLKAAQYAMKTYLVEISGG 346 (393)
T ss_dssp HHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCEECBCC
T ss_pred HHH--HhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCC------CHHHHHHHHHHhCCEEEecC
Confidence 211 223567788888999999999998888876653 3557778876322 34678888777679999998
Q ss_pred CCcCCCCCCeEEEEe-cC-CCcccHHHHHHHHHHHHHHc
Q 019899 297 SACHCIEPGWFRCCF-TS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~-~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+. .++++|+++ +. .+++++++++++|++++++.
T Consensus 347 ~~~~--~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 347 LGPT--AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp CGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred cccc--cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence 8663 368999999 53 46889999999999998764
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=251.46 Aligned_cols=292 Identities=14% Similarity=0.127 Sum_probs=222.0
Q ss_pred hhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCCh--hhhhhhccCcEEEEEeCCCCCCccc
Q 019899 3 GFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF--DRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~--~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+++.+.++ .+.+ +|++|+|+++++..++.+++++||+|+++.++|++. ...+. ..|.+++.++++ .++.+
T Consensus 63 ~~la~~~~----~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~~~~~--~~~~~ 135 (393)
T 3kgw_A 63 QGIQYVFQ----TRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIAD-RIGARVHQMIKK--PGEHY 135 (393)
T ss_dssp HHHHHHHT----CCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEECC--TTCCC
T ss_pred HHHHHHhC----CCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHH-HcCCceEEEeCC--CCCCC
Confidence 34444444 4444 599999999999999999999999999998887532 45566 789999999984 34579
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+|++|+.... .... ..
T Consensus 136 d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~g~~----~~~~---~~-- 198 (393)
T 3kgw_A 136 TLQEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASLGGV----PIYM---DQ-- 198 (393)
T ss_dssp CHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTTTTS----CCCT---TT--
T ss_pred CHHHHHHHHhhC-----CCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCccccCc----ccch---hh--
Confidence 999999999874 7899999999999999999 88999999999999999999874211 1111 11
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc-------------------------ccCCChHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR-------------------------FCSISAPTQRLL 214 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~ 214 (334)
.+.++++.|+||+++ .+.++|++++ ++++.+.+..... .++.+...+.++
T Consensus 199 ---~~~d~~~~s~sK~~~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 273 (393)
T 3kgw_A 199 ---QGIDIMYSSSQKVLN-APPGISLISF-NDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCL 273 (393)
T ss_dssp ---TTCCEEEEESSSTTC-CCSSCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHH
T ss_pred ---cCCCEEEecCccccc-CCCceeEEEE-CHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHH
Confidence 456788889999884 3344899998 8888888865321 124466666666
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcC
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS----AGLYCWADMSGLIPSYSEKGELELWDKLLNIAK 290 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 290 (334)
..++...+ +..+.+..+++.++++++.+.|++.|+++..+. .++++++.++... +..++...|++++|
T Consensus 274 ~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~g 345 (393)
T 3kgw_A 274 RESLALIA--EQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGY------NWRDIVSYVLDHFS 345 (393)
T ss_dssp HHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTB------CHHHHHHHHHHHHC
T ss_pred HHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCC------CHHHHHHHHHHhCC
Confidence 56554321 233677888999999999999999888776433 2566778877532 34688888777669
Q ss_pred eEEcCCCCcCCCCCCeEEEEe-cC-CCcccHHHHHHHHHHHHHHc
Q 019899 291 INVTPGSACHCIEPGWFRCCF-TS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 291 i~v~~g~~~~~~~~~~iRi~~-~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
|.+.+|..+. .++++|+++ +. .+++++++++++|++++++.
T Consensus 346 i~v~~g~~~~--~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 346 IEISGGLGPT--EERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp EECBCCCGGG--TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEeCCcccC--CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 9999988543 467999998 64 48999999999999999875
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=251.97 Aligned_cols=292 Identities=15% Similarity=0.213 Sum_probs=220.8
Q ss_pred hhhhhcCCCCC-CCCcEEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCC
Q 019899 5 MSQVLGQAVSF-DPSQIVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTD 75 (334)
Q Consensus 5 ~~~~~~~~~~~-~~~~i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~ 75 (334)
+++.+++.++. ++++|++|+|+++++..++.++ +++||+|+++.|+|++.... ++ ..|.+++.++++ .
T Consensus 72 l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~--~ 148 (406)
T 1kmj_A 72 VRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCA-RVGAELRVIPLN--P 148 (406)
T ss_dssp HHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHH-HHTCEEEEECBC--T
T ss_pred HHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHH-hCCCEEEEEecC--C
Confidence 44445555566 6789999999999999999999 89999999999999876543 44 579999999984 4
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
++.+|++++++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|+.+.. ..++..
T Consensus 149 ~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~----~~~~~~- 214 (406)
T 1kmj_A 149 DGTLQLETLPTLFDE------KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH----PVDVQA- 214 (406)
T ss_dssp TSCBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHH-
T ss_pred CCCcCHHHHHHHhcc------CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC----CCcccc-
Confidence 567899999999875 7899999999999999999 99999999999999999999986332 112221
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc---------------------c--cCCChHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR---------------------F--CSISAPTQR 212 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~---------------------~--~~~~~~~~~ 212 (334)
.+.++++.|+||.+|++| +||+++ ++++.+.++.... . .+.++..+.
T Consensus 215 -------~~~d~~~~s~~K~~g~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (406)
T 1kmj_A 215 -------LDCDFYVFSGHKLYGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGI 284 (406)
T ss_dssp -------HTCSEEEEEGGGTTSCTT--CEEEEE-CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHH
T ss_pred -------cCCCEEEEEchhccCCCC--cEEEEE-eHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHH
Confidence 356788999999998777 799998 7888877754321 0 123444444
Q ss_pred HHH-HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CceeEEeeecCCcCCCCChhhHHHHHHHHHHh
Q 019899 213 LLI-SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES--SAGLYCWADMSGLIPSYSEKGELELWDKLLNI 288 (334)
Q Consensus 213 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (334)
++. .+++..+ +..+.+.+++++++++++.+.|++. ++++..+ .++++.| .++.. +..++... +.+
T Consensus 285 ~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~-l~~ 353 (406)
T 1kmj_A 285 IGLGAALEYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLGKH-------HAYDVGSF-LDN 353 (406)
T ss_dssp HHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EETTC-------CHHHHHHH-HHH
T ss_pred HHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EECCC-------CHHHHHHH-Hhh
Confidence 333 3332211 2245677888889999999999987 7887776 6676654 56531 24567766 566
Q ss_pred cCeEEcCCCCcCC------CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 289 AKINVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 289 ~gi~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
+||.+.||..|.. ..++++|++++. .+++|++++++.|+++++..+
T Consensus 354 ~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l~ 406 (406)
T 1kmj_A 354 YGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG 406 (406)
T ss_dssp TTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhhC
Confidence 8999999875432 125799999996 499999999999999987653
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=249.11 Aligned_cols=293 Identities=13% Similarity=0.061 Sum_probs=219.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh--hhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD--RDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+++.+++.++++++++++|+|+++++..++.+++++||+|+++.|+|+++. ..++ ..|.+++.+++++ ++.+|++
T Consensus 47 l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~--~~~~d~~ 123 (392)
T 2z9v_A 47 VVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAK-RYSPHLLEIEVPY--NEAIDPQ 123 (392)
T ss_dssp HHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHH-HHCSCEEEEECCT--TSCCCHH
T ss_pred HHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHH-HcCCceEEeeCCC--CCCCCHH
Confidence 344444555667889999999999999999999999999999999998763 2334 5799999999843 3469999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++++++++ ..++++|++++|+||||.++| +++|.++|+++|+++|+|++|+... ...++..
T Consensus 124 ~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~----~~~~~~~-------- 184 (392)
T 2z9v_A 124 AVADMLKA----HPEITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSFGG----MKTHPED-------- 184 (392)
T ss_dssp HHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTBTT----BSCCGGG--------
T ss_pred HHHHHHhc----CCCCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEcccccCC----ccccccc--------
Confidence 99999974 126899999999999999999 8899999999999999999997421 1112211
Q ss_pred CCcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHhh----------------------cccCCChHHHHHHHHhhC
Q 019899 163 KDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKLT----------------------RFCSISAPTQRLLISMLS 219 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~ 219 (334)
.+.++++.|+||+++ ++| +||+++ ++++.+.++... ..++.+...+.++..+++
T Consensus 185 ~~~d~~~~s~sK~~~~~~g--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 261 (392)
T 2z9v_A 185 CKADIYVTGPNKCLGAPPG--LTMMGV-SERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALD 261 (392)
T ss_dssp GTCSEEEECSSSTTCCCSC--CEEEEE-CHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHH
T ss_pred ccceEEEecCcccccCCCc--eeEEEE-CHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHH
Confidence 345688899999764 445 599998 788877776421 112344455555555553
Q ss_pred ChHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCcccCCC----ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 220 DTKFIQEY-LETNKRRIKKLYDSFVAGLKQLGIRCSESS----AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 220 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
. +.+. +.+.+++++++++++.+.|+++|+++..+. .+.++++.++... +..++...|.+++||.+.
T Consensus 262 ~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~~gi~v~ 332 (392)
T 2z9v_A 262 L---YLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGV------DEKALRQAARARYGVVFS 332 (392)
T ss_dssp H---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCEECE
T ss_pred H---HHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCC------CHHHHHHHHHhcCCEEEe
Confidence 2 2333 567788899999999999988888776533 3566778876422 346788886665599999
Q ss_pred CCCCcCCCCCCeEEEEe-c-CCCcccHHHHHHHHHHHHHHc
Q 019899 295 PGSACHCIEPGWFRCCF-T-SLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 295 ~g~~~~~~~~~~iRi~~-~-~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+|..+. .++++|+++ + ..+++++++++++|++++++.
T Consensus 333 ~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 333 SGRGET--LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp ECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCC--CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 988543 368999995 5 479999999999999998765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-33 Score=251.14 Aligned_cols=291 Identities=17% Similarity=0.232 Sum_probs=219.4
Q ss_pred hhhhhcCCCCC-CCCcEEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCCh----hhhhhhccCcEEEEEeCCCCC
Q 019899 5 MSQVLGQAVSF-DPSQIVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGF----DRDIRFRTGVELIPVHCRSTD 75 (334)
Q Consensus 5 ~~~~~~~~~~~-~~~~i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~----~~~~~~~~g~~v~~v~~~~~~ 75 (334)
+++.+++.++. +++++++|+|+++++..++.++ +++||+|+++.|+|++. ...++ ..|.+++.++++ +
T Consensus 77 l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~ 153 (420)
T 1t3i_A 77 VRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAA-KTGAVLKFVQLD--E 153 (420)
T ss_dssp HHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHH-HHCCEEEEECBC--T
T ss_pred HHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHH-hcCcEEEEeccC--C
Confidence 34445555556 6789999999999999999999 89999999999999984 44455 679999999984 5
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
++.+|++++++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|+.+.. ...+..
T Consensus 154 ~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~~~~~~- 219 (420)
T 1t3i_A 154 QESFDLEHFKTLLSE------KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY----PLDVQL- 219 (420)
T ss_dssp TSSBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHH-
T ss_pred CCCcCHHHHHHhhCC------CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc----cCchhh-
Confidence 567999999999875 7899999999999999999 89999999999999999999986432 112222
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----------------------cCCChHHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----------------------CSISAPTQRL 213 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~ 213 (334)
.+.++++.|+||.+|++| +||+++ ++++.+.++..... .+.++..+.+
T Consensus 220 -------~~~di~~~s~sK~~~~~g--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (420)
T 1t3i_A 220 -------IDCDWLVASGHKMCAPTG--IGFLYG-KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAI 289 (420)
T ss_dssp -------HTCSEEEEEGGGTTSCTT--CEEEEE-CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHH
T ss_pred -------cCCCEEEEehhhhcCCCc--eEEEEE-chHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHH
Confidence 346788899999888667 899998 78888777543221 1244444444
Q ss_pred HHH-hhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC------ceeEEeeecCCcCCCCChhhHHHHHHHH
Q 019899 214 LIS-MLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESS------AGLYCWADMSGLIPSYSEKGELELWDKL 285 (334)
Q Consensus 214 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (334)
+.. .++..+ +..+.++.++++++++++.+.|++. |+++..+. ++++ ++.++.. +..++.+.
T Consensus 290 a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~- 358 (420)
T 1t3i_A 290 ALGAAVDYLT--DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALA-SFNVAGL-------HASDVATM- 358 (420)
T ss_dssp HHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEE-EEEETTB-------CHHHHHHH-
T ss_pred HHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEE-EEEECCC-------CHHHHHHH-
Confidence 332 332211 1235677888899999999999987 78877664 4554 4566631 23567666
Q ss_pred HHhcCeEEcCCCCcCC------CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 286 LNIAKINVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 286 l~~~gi~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++++||.+.||..|.. ..++++|++++. .++++++++++.|++++++.
T Consensus 359 l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 359 VDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp HHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6668999999865421 115789999995 58999999999999998764
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=251.07 Aligned_cols=293 Identities=15% Similarity=0.107 Sum_probs=217.0
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCC-------------CCeEEecCCCCCChhhhhhhccCcEEEEEeCCC
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADH-------------GNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~ 73 (334)
+.+++.+++++++|++|+|+++++..++.++..+ ||+|+++.|+|+++...++ ..|.+++.+|++
T Consensus 76 ~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~v~~~- 153 (397)
T 3f9t_A 76 ALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGRE-MMDLEYIYAPIK- 153 (397)
T ss_dssp HHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHH-HHTCEEEEECBC-
T ss_pred HHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHH-HcCceeEEEeeC-
Confidence 3344445678889999999999999999998765 9999999999999999998 889999999984
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc-chh
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF-VSM 152 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~-~~~ 152 (334)
.++.+|++++++++++. +++++++++|+||||.+.+ +++|.++|++||+++|+|++|+.+.++.... ..+
T Consensus 154 -~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~ 224 (397)
T 3f9t_A 154 -EDYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKK 224 (397)
T ss_dssp -TTSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCC
T ss_pred -CCCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccccchhhhhccccccc
Confidence 45789999999999863 6889999999999999998 8999999999999999999998765421110 000
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc----------CC---ChHHHHHHHHhhC
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC----------SI---SAPTQRLLISMLS 219 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~l~ 219 (334)
..+....+...+.++++.|++|+++ +|.|+|+++++++.+.+.+......+ +. +...+.++...+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 303 (397)
T 3f9t_A 225 KGVNYKFDFSLGVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG 303 (397)
T ss_dssp TTCCCCCSGGGTCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHh
Confidence 0000000000145678899999886 77799999986766665543322221 11 2233333333331
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
...+.+..+++.++++++.+.|++.++++..+..+.+++++++. ..++...|.+ +||.+.++..
T Consensus 304 -----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~-~gi~v~~~~~- 367 (397)
T 3f9t_A 304 -----REGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDED---------YKEVCKKLRD-RGIYVSVCNC- 367 (397)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTT---------HHHHHHHHHH-TTCBCEECSS-
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCC---------HHHHHHHHHh-CCeEEeccCC-
Confidence 33456677788899999999999988886655556666777764 2577787555 6999988763
Q ss_pred CCCCCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 300 HCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 300 ~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
++++|++++. .+++++++++++|+++++
T Consensus 368 ----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 368 ----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp ----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred ----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 5799999985 599999999999998875
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=248.48 Aligned_cols=287 Identities=14% Similarity=0.043 Sum_probs=214.2
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh--hhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD--RDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
++.+++.++++++++++|+|+++++..++.++.++||+|+++.|+|+++. ..++ ..|.+++.++++ .++.+|+++
T Consensus 40 ~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~ 116 (352)
T 1iug_A 40 RGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIAL-EAGLVVERLDYP--YGDTPRPED 116 (352)
T ss_dssp HHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-HTTCEEEEEECC--TTCCCCTTT
T ss_pred HHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHHHHHHHH-HcCCceEEEeCC--CCCCCCHHH
Confidence 33344444566789999999999999999999999999999999999875 3334 579999999984 345688888
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK--NIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++ + ++++|++++|+||||.+.+ +++|.++|+++ |+++|+|++|+... ....+. .
T Consensus 117 l~~---~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~----~~~~~~---~---- 173 (352)
T 1iug_A 117 VAK---E------GYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSLLV----GEVALE---A---- 173 (352)
T ss_dssp SCC---S------SCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTBTT----BCCCSG---G----
T ss_pred Hhc---c------CCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCccccC----cceecc---c----
Confidence 876 2 7889999999999999999 88999999999 99999999987421 111111 1
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHH---------HH----H---hhcccCCChHHHHHHHHhhCChHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAA---------AK----K---LTRFCSISAPTQRLLISMLSDTKFIQ 225 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~---------~~----~---~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (334)
.+.++++.|+||+++ .+.++||+++ ++++.+. +. . ....++.+...+.++..++... .
T Consensus 174 -~~~d~~~~s~~K~~~-~~~g~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~ 247 (352)
T 1iug_A 174 -MGVDAAASGSQKGLM-CPPGLGFVAL-SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV---L 247 (352)
T ss_dssp -GTCSEEEEESSSTTC-CCSCEEEEEE-CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---G
T ss_pred -cCeeEEEecCccccc-CCCceeEEEE-CHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH---H
Confidence 245678899999664 2234799998 6666543 22 1 1223455666776666666432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLGIRCSESS-AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
+++.+.+++++++++++.+.|++.|+++..+. .+.++|++++... +..++...|.+ +||.+.||..+ ..+
T Consensus 248 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~~~--~~~ 318 (352)
T 1iug_A 248 PRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV------PYARVKEAFAQ-RGAVIAGGQGP--LKG 318 (352)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTC------CHHHHHHHHHT-TTEECEECCGG--GTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCC------CHHHHHHHHHH-CCEEEEeCCCc--cCC
Confidence 22567788889999999999988888877664 5667888887422 34678888554 69999998843 246
Q ss_pred CeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 305 GWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 305 ~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+++|++++. .+++++++++++|++++++.
T Consensus 319 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 319 KVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp TEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 799999986 47999999999999998753
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=254.87 Aligned_cols=287 Identities=18% Similarity=0.204 Sum_probs=217.1
Q ss_pred hcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHH
Q 019899 9 LGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAF 88 (334)
Q Consensus 9 ~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l 88 (334)
+++.++.+ ++++++|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.++...+.++.+|++++++++
T Consensus 63 la~~~~~~--~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l 139 (371)
T 2e7j_A 63 LPKFLGCD--VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-RAGLNIALVPKTDYPDYAITPENFAQTI 139 (371)
T ss_dssp HHHHTTSS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-HTTCEEEEECCCCTTTCCCCHHHHHHHH
T ss_pred HHHHcCCC--EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHH-HcCCeEEEeecccCCCCCcCHHHHHHHH
Confidence 44444444 99999999999999999999999999999999999999988 8999999999211345789999999999
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEE
Q 019899 89 NQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (334)
++...+ .+++++++++|+||||.+++ +++|.++|+++|+++|+|++|+.+..+ .+... .+.+++
T Consensus 140 ~~~~~~-~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~--------~~~di~ 203 (371)
T 2e7j_A 140 EETKKR-GEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP----VSLKE--------IGADFI 203 (371)
T ss_dssp HHHTTT-SCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC----CCHHH--------HTCSEE
T ss_pred Hhhccc-CCeEEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC----CChhh--------cCCCEE
Confidence 853221 37899999999999999999 799999999999999999999875432 22222 234588
Q ss_pred EecccccCCCCCceEEEEeecCHHHHHH-HHHhhc---------ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH--H
Q 019899 169 IYGLSKDLSLPGFRTGVIYSYNESVLAA-AKKLTR---------FCSISAPTQRLLISMLSDTKFIQEYLETNKRRI--K 236 (334)
Q Consensus 169 ~~s~sK~~~~~g~r~g~i~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~ 236 (334)
+.|+||+++ .+.|+||+++ ++++.+. ++.... .++.+.....++...++. +.. +..+++ +
T Consensus 204 ~~s~sK~~~-~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~---~~~~~~~~~ 275 (371)
T 2e7j_A 204 VGSGHKSMA-ASGPIGVMGM-KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRE---RIKRWDEEV 275 (371)
T ss_dssp EEEHHHHSS-CCSSCEEEEE-CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHH---HGGGHHHHH
T ss_pred EecCCcCCC-CCCCcEEEEE-echhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHH---HHH---HHHHHHHHH
Confidence 999999997 4459999999 5666665 554332 334445555555444432 122 455667 7
Q ss_pred HHHHHHHHHHHhCCCcccCCC--ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC----CCCCeEE-E
Q 019899 237 KLYDSFVAGLKQLGIRCSESS--AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC----IEPGWFR-C 309 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~~iR-i 309 (334)
++++++.+.|++.++++..+. .+.++|++++ +..++.+.|. ++||.+.| ..++. ..++++| +
T Consensus 276 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii 344 (371)
T 2e7j_A 276 EKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE---------VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYF 344 (371)
T ss_dssp HHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH---------HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEE
T ss_pred HHHHHHHHHHHHcCcEEecCCCccCceEEEECC---------CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEE
Confidence 888899999988888877653 3557888876 2357777744 68999988 43322 1257899 9
Q ss_pred EecC--CCcccHHHHHHHHHHHHHHc
Q 019899 310 CFTS--LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 310 ~~~~--~~~~~l~~~l~~l~~~~~~~ 333 (334)
+++. .+++++++++++|+++++++
T Consensus 345 ~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 345 KLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 9985 58999999999999999875
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=252.94 Aligned_cols=287 Identities=19% Similarity=0.262 Sum_probs=216.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
+++.+++.+++++++|++|+|+++++..++.++ +++||+|+++.|+|+++... ++ ..|.+++.+++++++++.+
T Consensus 64 l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~ 142 (390)
T 1elu_A 64 LRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAA-RFGITYRFFPVAATLNQGD 142 (390)
T ss_dssp HHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHH-HHCCEEEEECCGGGSSSSC
T ss_pred HHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHH-HhCcEEEEEcCCCCCCccc
Confidence 444555556677889999999999999999999 89999999999999997754 34 5799999999854356789
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHH----hcCcEEEEeccccccccCCCCcchhhhh
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAR----EKNIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~----~~~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
|++++++++++ ++++|++++|+||||.++| +++|.++|+ ++|+++|+|++|+... ....+
T Consensus 143 d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~----~~~~~--- 206 (390)
T 1elu_A 143 AAAVLANHLGP------KTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS----LPLDF--- 206 (390)
T ss_dssp HHHHHHTTCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT----BCCCT---
T ss_pred hHHHHHHhcCC------CceEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCC----cCCCh---
Confidence 99999998875 7899999999999999999 889999999 9999999999998522 11111
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh------------------------hcccCCChHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL------------------------TRFCSISAPTQ 211 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 211 (334)
.. .+.++++.|+||+++ .|.++||+++ ++++.+.+... ...++.+...+
T Consensus 207 ~~-----~~~d~~~~s~~K~~~-~~~g~G~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (390)
T 1elu_A 207 SR-----LEVDYYAFTGHKWFA-GPAGVGGLYI-HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQY 279 (390)
T ss_dssp TT-----SCCSEEEEESSSTTC-CCTTCEEEEE-CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHH
T ss_pred hh-----cCCCEEEcccccccc-CCCceEEEEE-CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHH
Confidence 11 456788999999553 5566899998 66666655431 11234555666
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC---CCceeEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 212 RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE---SSAGLYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
.++..++..... ..++.+.+++++++++++.+.|+++ |+++.. +.++++. ++++... +..++.+.| .
T Consensus 280 ~a~~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~l-~ 350 (390)
T 1elu_A 280 AGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVS-FTVDSPL------GHRAIVQKL-E 350 (390)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEE-EEECSSS------CHHHHHHHH-H
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEE-EEcCCCC------CHHHHHHHH-H
Confidence 666555543211 1235778888999999999999987 887764 3456555 4776322 345788885 5
Q ss_pred hcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHH
Q 019899 288 IAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 288 ~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
++||.+.+|. .++++|++++. .+++++++++++|+++
T Consensus 351 ~~gi~v~~~~-----~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 351 EQRIYLRTIA-----DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp HTTEECEEET-----TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred HCCEEEEecC-----CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 6899999876 25789999964 6999999999998753
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=245.56 Aligned_cols=276 Identities=13% Similarity=0.138 Sum_probs=210.8
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCce
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKV 98 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 98 (334)
+.++++++++++..++.+++++||.|+++.|+|+.+...++ ..|.+++.+|. .|++++++++++. ..++
T Consensus 101 ~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-~~g~~~~~~~~-------~d~~~l~~~l~~~---~~~~ 169 (384)
T 1bs0_A 101 RALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS-LSPSQLRRFAH-------NDVTHLARLLASP---CPGQ 169 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-TSSSEEEEECT-------TCHHHHHHHHHSC---CSSC
T ss_pred cEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHH-HcCCCEEEeCC-------CCHHHHHHHHHhc---CCCC
Confidence 45555555899999999999999999999999999999998 88999999884 4789999888752 1136
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCC
Q 019899 99 RGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSL 178 (334)
Q Consensus 99 ~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~ 178 (334)
+++++++|+||||.++| +++|.++|+++|+++|+||+|+.+.++... .++....+ .+.++++.|+||++++
T Consensus 170 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~-----~~~di~~~s~sK~~~~ 240 (384)
T 1bs0_A 170 QMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG-RGSCWLQK-----VKPELLVVTFGKGFGV 240 (384)
T ss_dssp EEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGG-CCHHHHTT-----CCCSEEEEESSSTTSS
T ss_pred eEEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCC-CchHHhcC-----CCCcEEEeeccchhhc
Confidence 88889999999999999 899999999999999999999876543111 11111111 2345889999999996
Q ss_pred CCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 019899 179 PGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQE-YLETNKRRIKKLYDSFVAGLKQLGIRC 253 (334)
Q Consensus 179 ~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~ 253 (334)
+| ||+++ ++++++.+...... .+.++..+.++...++.. .+ +..+.+++++++++++.+.|++.|+++
T Consensus 241 ~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 313 (384)
T 1bs0_A 241 SG---AAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVI---RSDEGDARREKLAALITRFRAGVQDLPFTL 313 (384)
T ss_dssp CC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH---HSHHHHHHHHHHHHHHHHHHHHHTTSSCEE
T ss_pred cC---cEEEe-CHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 66 99998 78888888764322 246777777766666432 21 446778889999999999999988877
Q ss_pred cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCcccHHHHHHHHHHH
Q 019899 254 SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 254 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
.. ..+.++|++++.. .+..++...|++ +||.+.|+..++.. .++++|++++. .+++++++++++|+++
T Consensus 314 ~~-~~~~~~~~~~~~~------~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 314 AD-SCSAIQPLIVGDN------SRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp CS-CCSSBCCEEEESH------HHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred cC-CCCCEEEEEeCCH------HHHHHHHHHHHH-CCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 64 4556667887632 245678888655 69999998877532 34789999985 4899999999999875
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=242.55 Aligned_cols=289 Identities=13% Similarity=0.061 Sum_probs=214.9
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCCh--hhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF--DRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~--~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+.++ ...+++++++|+|+++++..++.++.+ |+|++++++|+++ ...++ ..|.+++.++++ .++.+|
T Consensus 40 ~~la~~~g--~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d 112 (353)
T 2yrr_A 40 ERLAALFD--PGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAA-LHGLDPEVLDFP--PGEPVD 112 (353)
T ss_dssp HHHHHHHC--CCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHH-HTTCCEEEEECC--TTSCCC
T ss_pred HHHHHHhC--CCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHH-HcCCceEEEeCC--CCCCCC
Confidence 44455444 223467899999999999999999876 8999999999875 33445 689999999984 345799
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++. ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+... ...++..
T Consensus 113 ~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~~~~----~~~~~~~------ 174 (353)
T 2yrr_A 113 PEAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTTLGM----LPFSMRA------ 174 (353)
T ss_dssp HHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTT----SCCCHHH------
T ss_pred HHHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCccccc----ccccccc------
Confidence 99999999862 6889999999999999999 8899999999999999999996422 1122222
Q ss_pred cCCCcEEEEecccccC-CCCCceEEEEeecCHHHHHHHHH-----------------hhcccCCChHHHHHHHHhhCChH
Q 019899 161 VDKDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKK-----------------LTRFCSISAPTQRLLISMLSDTK 222 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~~ 222 (334)
.+.++++.|++|++ +++| +||+++ ++++.+.++. ....++.+...+.++..++....
T Consensus 175 --~~~d~~~~s~~K~~~~~~g--~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 249 (353)
T 2yrr_A 175 --MGVDYAFTGSQKCLSAPPG--LAPIAA-SLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVL 249 (353)
T ss_dssp --HTCSEEECCTTSTTCCCSS--CEEEEE-CHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred --cCceEEEecCcccccCCCc--eEEEEE-CHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 23457788999976 4455 699998 7777766531 11123456666666665554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS--AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
+..+.+.+++++++++++.+.|++.|+++..+. .++++|+++|... +..++.+.|.+ +||.+.||..+.
T Consensus 250 --~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~g~~~~ 320 (353)
T 2yrr_A 250 --EEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGV------DADRLVRALYA-EGVAVAGGIGPT 320 (353)
T ss_dssp --HHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTC------CHHHHHHHHHH-TTEECEECCGGG
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCC------CHHHHHHHHHH-CCEEEeCCcccc
Confidence 222567788899999999999988888776554 5667788886422 34678888555 699999988664
Q ss_pred CCCCCeEEEEec-CCCcccHH-HHHHHHHHHHHH
Q 019899 301 CIEPGWFRCCFT-SLTHEDIP-LVIERIQKVAET 332 (334)
Q Consensus 301 ~~~~~~iRi~~~-~~~~~~l~-~~l~~l~~~~~~ 332 (334)
.++++|++++ ..++++++ +++++|+++++.
T Consensus 321 --~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 321 --RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp --TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred --CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 3678999995 36899999 999999998763
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=242.63 Aligned_cols=282 Identities=16% Similarity=0.139 Sum_probs=213.3
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecC-CCCCC-hhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPS-PYYPG-FDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~-p~~~~-~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
++++++++|+++++..++.++.++||+|++++ +.|+. +...+. ..|.+++.++++ .++.+|++++++++++.
T Consensus 56 ~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--- 129 (366)
T 1m32_A 56 YTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG-LMGIAHHAYDCG--EVARPDVQAIDAILNAD--- 129 (366)
T ss_dssp EEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHH-HHTCCEEEEECC--TTSCCCHHHHHHHHHHC---
T ss_pred CcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHH-HhCCceEEEeCC--CCCCCCHHHHHHHHhcC---
Confidence 35799999999999999999999999988776 55654 445555 779999999984 45579999999999861
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
.+++++++++|+||||.++| +++|.++|++||+++|+|++|+.+.. ..++ .. .+.++++.|+||
T Consensus 130 -~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~---~~-----~~~di~~~s~~K 193 (366)
T 1m32_A 130 -PTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGI----PMDI---AA-----LHIDYLISSANK 193 (366)
T ss_dssp -TTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS----CCCT---TT-----TTCSEEEEESSS
T ss_pred -CCeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCc----Cccc---cc-----cCccEEEecCcc
Confidence 24788999999999999999 89999999999999999999985332 1111 11 356788999999
Q ss_pred cCCCCCceEEEEeecCHHHHHHHHHhh------------------c--ccCCChHHHHHHHHhhCChHHHHHH--HHHHH
Q 019899 175 DLSLPGFRTGVIYSYNESVLAAAKKLT------------------R--FCSISAPTQRLLISMLSDTKFIQEY--LETNK 232 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~~~~~~~~~~~~~------------------~--~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~ 232 (334)
+++ .+.++||+++ ++++.+.+.... . .++.+...+.++..+++.. .+. +.+.+
T Consensus 194 ~~~-~~~g~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~ 268 (366)
T 1m32_A 194 CIQ-GVPGFAFVIA-REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL---AKEGGVAARH 268 (366)
T ss_dssp TTC-CCSSEEEEEE-EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---HHHTHHHHHH
T ss_pred ccc-CCCceEEEEE-CHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH---HHccCHhHHH
Confidence 884 2345799998 677766553310 0 2456666666666666432 233 56778
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCC---CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEE
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSES---SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRC 309 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi 309 (334)
++++++++++.+.|++.|+++..+ ..++++|++++... ..+..++.+.|.+ +||.+.||..|+ ++++|+
T Consensus 269 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~-~gi~v~~~~~~~---~~~iRi 340 (366)
T 1m32_A 269 QRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDP----QYRFSEFYRRLKE-QGFVIYPGKVSQ---SDCFRI 340 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCT----TCCHHHHHHHHHH-TTEECEECCCSS---SCEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccC----CCCHHHHHHHHHH-CCEEEECCcCCC---CCEEEE
Confidence 889999999999999888876654 35778889887410 0134678888555 699999988763 679999
Q ss_pred EecC-CCcccHHHHHHHHHHHHHHc
Q 019899 310 CFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 310 ~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+++. .+++++++++++|+++++++
T Consensus 341 ~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 341 GNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9986 48999999999999988764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=247.75 Aligned_cols=290 Identities=17% Similarity=0.154 Sum_probs=214.5
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----CCCCeEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCcccc
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----DHGNALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~~~~ 80 (334)
+.+++.++++++++++|+|+++++.+++.++. ++||+|++++|+|+++...+.. ..|.+++.++++ .++.+|
T Consensus 50 ~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d 127 (382)
T 4eb5_A 50 EKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVD 127 (382)
T ss_dssp HHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBC--TTSCBC
T ss_pred HHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccC--CCCccC
Confidence 33444445677899999999999999999997 8999999999999988776651 369999999984 356799
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||||.++| +++|.++|+++|++ |+|++|+. +....++..
T Consensus 128 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~----g~~~~~~~~------ 187 (382)
T 4eb5_A 128 VSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATASV----GQIEVDVEK------ 187 (382)
T ss_dssp HHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTTB----TTBCCCHHH------
T ss_pred HHHHHHHhcC------CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchhc----CCcccCccc------
Confidence 9999999875 7899999999999999999 88999999999999 99999984 211122221
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHH-HHHHHH-----HhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES-VLAAAK-----KLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
.+.++++.|+||.+|++| +|+++++++. +...+. .....++.+...+.++..++.. +.+.+.+++++
T Consensus 188 --~~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~ 260 (382)
T 4eb5_A 188 --IGADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEI---TAMEWREEAER 260 (382)
T ss_dssp --HTCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred --cCCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHH---HHHhHHHHHHH
Confidence 245688899999887656 6888885442 211110 0111234455555555555532 23456778888
Q ss_pred HHHHHHHHHHHHHhC-CCcccCCCc---eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--------
Q 019899 235 IKKLYDSFVAGLKQL-GIRCSESSA---GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-------- 302 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-------- 302 (334)
++++++++.+.|+++ ++++..+.+ +.++++.++.. +..++.+.|. ++||.+.+|..|...
T Consensus 261 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~ 332 (382)
T 4eb5_A 261 LRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGESIVLSLD-MAGIQASTGSACSSKTLQPSHVL 332 (382)
T ss_dssp HHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS-------CHHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc-------CHHHHHHHHH-HCCEEEeccccccCCCCcccHHH
Confidence 999999999999887 777665542 44566777631 3457788754 589999999875432
Q ss_pred ---------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 ---------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 ---------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.++++|++++. .+++++++++++|++++++.
T Consensus 333 ~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (382)
T 4eb5_A 333 MACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp HHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 25799999985 58999999999999998764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=248.21 Aligned_cols=289 Identities=17% Similarity=0.175 Sum_probs=212.3
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----CCCCeEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCcc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----DHGNALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~~ 78 (334)
+++.+++.++++++++++++|+++++..++.++. ++||+|+++.++|+++...+.. ..|.+++.++++ .++.
T Consensus 48 ~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~ 125 (382)
T 4hvk_A 48 AREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGE 125 (382)
T ss_dssp HHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--TTSC
T ss_pred HHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--CCCC
Confidence 3444455566778899999999999999999987 8999999999999998876651 259999999984 4557
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|++++++++++ +++++++++|+||||.+.| +++|.++|+++|+ +|+|++|+... ...+...
T Consensus 126 ~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~~~----~~~~~~~---- 187 (382)
T 4hvk_A 126 VDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASVGQ----IEVDVEK---- 187 (382)
T ss_dssp BCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTBTT----BCCCHHH----
T ss_pred cCHHHHHHHhcc------CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhcCC----CCCCchh----
Confidence 999999999975 7899999999999999999 8899999999999 99999987422 1122221
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh---------cccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT---------RFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.+.++++.|+||.+|++| +|+++++++. .+.... ..++.+...+.++..++. +..+++.
T Consensus 188 ----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~~ 255 (382)
T 4hvk_A 188 ----IGADMLTISSNDIYGPKG--VGALWIRKEA---KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE---ITAMEWR 255 (382)
T ss_dssp ----HTCSEEEEESGGGTSCTT--CEEEEEETTC---CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH---HHHHHHH
T ss_pred ----cCCCEEEEeHHHhcCCCc--eEEEEEcCcc---CcCcccccCCCcCccccCCcCHHHHHHHHHHHH---HHHhhHH
Confidence 345688999999887666 5666663332 111111 123345566666656554 2345678
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCcccCCCc---eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC--
Q 019899 230 TNKRRIKKLYDSFVAGLKQL-GIRCSESSA---GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE-- 303 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~-- 303 (334)
+..++++++++++.+.|+++ ++++..+.+ +.++++.++.. +..++.+. ++++||.+.+|..|+...
T Consensus 256 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-l~~~gi~v~~g~~~~~~~~~ 327 (382)
T 4hvk_A 256 EEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGESIVLS-LDMAGIQASTGSACSSKTLQ 327 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-------CHHHHHHH-HHHTTCBCBCC--------C
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-------CHHHHHHH-HHHCCEEEeeCCccCCCCCc
Confidence 88899999999999999987 777665543 23455666532 34567777 555899999998776532
Q ss_pred ---------------CCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 304 ---------------PGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 304 ---------------~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++++|++++. .++++++++++.|++++++.
T Consensus 328 ~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~ 373 (382)
T 4hvk_A 328 PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp CCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999985 58999999999999998764
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=246.84 Aligned_cols=297 Identities=13% Similarity=0.065 Sum_probs=215.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+++.+++.++. +++|++++|++ ++..++..+. .+||+|+++.|+|+++...++ ..|.+++.++.+ |++
T Consensus 96 l~~~la~~~~~-~~~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~-------d~~ 165 (401)
T 2bwn_A 96 LEAEIAGLHQK-EAALVFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIK-RNAGPKRIFRHN-------DVA 165 (401)
T ss_dssp HHHHHHHHTTC-SEEEEESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHH-HSCCCEEEECTT-------CHH
T ss_pred HHHHHHHHhCC-CcEEEECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHH-HcCCeEEEEcCC-------CHH
Confidence 34444444443 46788877666 7777766653 589999999999999999988 889999999852 688
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++... ..++++|++++|+||||.+.| +++|.++|+++|+++|+|++|+.+.++... ..+..... ..
T Consensus 166 ~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~~~~~---~~ 236 (401)
T 2bwn_A 166 HLRELIAADD--PAAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVAERDG---LM 236 (401)
T ss_dssp HHHHHHHHSC--TTSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHHHHHT---CG
T ss_pred HHHHHHHhhc--cCCceEEEEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCC-ceeeeccC---cc
Confidence 9998887421 026899999999999999999 899999999999999999999965553221 11111111 11
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.+.+++++|+||+++++| ||+++ ++++.+.++..... .+.++..+.++..+++..+ ...+.+.+++++++
T Consensus 237 ~~~~i~~~s~sK~~~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~ 310 (401)
T 2bwn_A 237 HRIDIFNGTLAKAYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMH 310 (401)
T ss_dssp GGCSEEEEESSSTTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHH
T ss_pred ccCcEEEeechhhccCCC---CEEec-CHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 234688899999999777 99998 78888887653221 2234566655555553211 11235677888899
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~ 316 (334)
++++.+.|++.|+++..+.++ ++|+.++.. .+..++...|++++||.+.|+..++.. ..+++|++++. .++
T Consensus 311 ~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~------~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~ 383 (401)
T 2bwn_A 311 AKVLKMRLKALGMPIIDHGSH-IVPVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDL 383 (401)
T ss_dssp HHHHHHHHHHHTCCBCCCSSS-CEEEECCCH------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCH
T ss_pred HHHHHHHHHHCCCcccCCCCC-eEEEEeCCh------HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCH
Confidence 999999998888887777665 677887642 245678888766789999998876543 23689999985 589
Q ss_pred ccHHHHHHHHHHHHHHc
Q 019899 317 EDIPLVIERIQKVAETC 333 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~ 333 (334)
+++++++++|+++++++
T Consensus 384 ~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 384 KQIDGLVHAMDLLWARC 400 (401)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987654
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=243.24 Aligned_cols=274 Identities=14% Similarity=0.132 Sum_probs=203.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+++.++. +++++++|+++++..++.+++++||+|+++.|+|+++.. .++ ..|.+++.++.. |
T Consensus 67 l~~~ia~~~g~--~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~-~~g~~~~~v~~~-------d 136 (404)
T 1e5e_A 67 LEGKIAFLEKT--EACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALT-KFGIQVDFINTA-------I 136 (404)
T ss_dssp HHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHH-HTTCEEEEECTT-------S
T ss_pred HHHHHHHHhCC--CcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHH-HcCCEEEEECCC-------C
Confidence 33444433333 478888888999999999999999999999999999888 566 789999999862 7
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-cCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE-KNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~-~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
++++++++++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+|++|+.+.+. .++ .
T Consensus 137 ~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~----~~~----~-- 197 (404)
T 1e5e_A 137 PGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT----NPV----D-- 197 (404)
T ss_dssp TTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC----CGG----G--
T ss_pred HHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhC----Ccc----c--
Confidence 8899988875 7999999999999999998 9999999999 99999999999986653 111 1
Q ss_pred ccCCCcEEEEecccccCCCCCceE-EEEeecCHHHHH-HHHHhhccc---CCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVLA-AAKKLTRFC---SISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
.+.++++.|+||+++++|.|+ ||+++ ++++++ .+......+ +.++..+.++...++... .+.++
T Consensus 198 ---~~~di~~~S~sK~~~~~g~ri~G~~~~-~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~-------~~~~~ 266 (404)
T 1e5e_A 198 ---FGVDVVVHSATKYINGHTDVVAGLICG-KADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN-------IRMKA 266 (404)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH-------HHHHH
T ss_pred ---cCCEEEEEcCccccCCCCCCeEEEEEE-CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHH-------HHHHH
Confidence 367889999999999899998 99998 677766 777665443 467778888777776532 22233
Q ss_pred HHHHHHHHHHHHHhCC---------------CcccCC----CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 235 IKKLYDSFVAGLKQLG---------------IRCSES----SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~g---------------~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
..++.+.+.+.+++.. +++..+ .++++.| +++.. .+....++++.|| +.+
T Consensus 267 ~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~---------~~~~~~~l~~~~i-~~~ 335 (404)
T 1e5e_A 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSG---------FEGAKKLLDNLKL-ITL 335 (404)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTH---------HHHHHHHHHTCSS-SEE
T ss_pred HHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCC---------HHHHHHHHHhCCC-cee
Confidence 3444555555555432 122222 2677766 77531 2344556888898 545
Q ss_pred CCCcCC-----------------------C--CCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 296 GSACHC-----------------------I--EPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 296 g~~~~~-----------------------~--~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
|..||. . .++++|+|++ . ++++++++.|++++++
T Consensus 336 ~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~--e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 336 AVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-I--EDADELIADFKQGLDA 394 (404)
T ss_dssp SSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-S--SCHHHHHHHHHHHHHH
T ss_pred ccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-C--CCHHHHHHHHHHHHHH
Confidence 554442 1 1579999999 3 8999999999988765
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=246.43 Aligned_cols=288 Identities=10% Similarity=0.109 Sum_probs=213.8
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh---cCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccc
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCL---ADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l---~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~ 79 (334)
++.+++.+++++++|++|+|+++++.+++.++ +++||+|+++.|+|+++...+.. ..|.+++.+++++ +++.+
T Consensus 75 ~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~ 153 (406)
T 3cai_A 75 REAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI-ETGEL 153 (406)
T ss_dssp HHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT-TTCCC
T ss_pred HHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc-ccCCc
Confidence 33444445567789999999999999999987 78999999999999988776651 1699999999853 34578
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|+++|++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|+.. .....+..
T Consensus 154 d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g----~~~~~~~~----- 215 (406)
T 3cai_A 154 PTWQWESLISK------STRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAP----YRLLDIRE----- 215 (406)
T ss_dssp CGGGHHHHCCT------TEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTT----TCCCCHHH-----
T ss_pred CHHHHHHHhCC------CceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccC----CCCCCchh-----
Confidence 99999999875 7899999999999999999 889999999999999999999742 11122221
Q ss_pred ccCCCcEEEEecccccCCCCCceEE-EEeecCHHHHHHHHHhhc-----------ccCCChHHHHHHHHhhCChH-----
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTG-VIYSYNESVLAAAKKLTR-----------FCSISAPTQRLLISMLSDTK----- 222 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g-~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~----- 222 (334)
.+.++++.|+||.+| ++ +| |+++ ++++.+.++.... .++.+...+.++..+++..+
T Consensus 216 ---~~~d~~~~s~~K~~g-~~--~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~ 288 (406)
T 3cai_A 216 ---TDADVVTVNAHAWGG-PP--IGAMVFR-DPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDES 288 (406)
T ss_dssp ---HCCSEEEEEGGGGTS-CS--CEEEEES-CHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTT
T ss_pred ---cCCCEEEeehhhhcC-CC--cCeEEEE-ehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccc
Confidence 345688899999876 54 88 9998 7777776654321 23445555545444442211
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe
Q 019899 223 -------FIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI 291 (334)
Q Consensus 223 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi 291 (334)
.+++++.+.+++++++++++.+.|++. ++++..+. ++ ++++.++.. +..++...| .++||
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~L-~~~gi 359 (406)
T 3cai_A 289 ARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKV-------PADRVVQRL-ADNGI 359 (406)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETTB-------CHHHHHHHH-HHTTE
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECCc-------CHHHHHHHH-HHCCc
Confidence 012256778888999999999999987 77766553 44 567777631 345777775 55899
Q ss_pred EEcCCC------CcCCC-CCCeEEEEecC-CCcccHHHHHHHHHH
Q 019899 292 NVTPGS------ACHCI-EPGWFRCCFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 292 ~v~~g~------~~~~~-~~~~iRi~~~~-~~~~~l~~~l~~l~~ 328 (334)
.+.+|. .++.. ..+++|++++. .+++++++++++|++
T Consensus 360 ~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 360 LAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp ECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred EEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 999887 33332 24789999985 488999999999875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=246.26 Aligned_cols=284 Identities=16% Similarity=0.214 Sum_probs=217.3
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCc
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVK 97 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 97 (334)
++.++++++++++..++.+++++||.|+++.|+|.++...++ ..|.+++.++. +|+++|++++++... .+
T Consensus 125 ~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~-~~g~~~~~~~~-------~d~~~le~~l~~~~~--~~ 194 (427)
T 2w8t_A 125 TGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQ-QGNAEIVRFRH-------NSVEDLDKRLGRLPK--EP 194 (427)
T ss_dssp SEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHH-HSCSEEEEECT-------TCHHHHHHHHHTSCS--SS
T ss_pred CceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHH-HcCCeeEEeCC-------CCHHHHHHHHHhccC--CC
Confidence 366777777889999999999999999999999999999998 88999998873 589999999875210 16
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCC
Q 019899 98 VRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLS 177 (334)
Q Consensus 98 ~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~ 177 (334)
+++|++++++||||.+.+ +++|.++|++||+++|+||+|+.+.++... .+..... ++.++.++++.|+||.+|
T Consensus 195 ~~~v~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g-~~~~~~~---~~~~~~di~~~s~sK~~g 267 (427)
T 2w8t_A 195 AKLVVLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNG-RGVYEAQ---GLEGQIDFVVGTFSKSVG 267 (427)
T ss_dssp CEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-CCHHHHT---TCTTCCSEEEEESSSTTC
T ss_pred CeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCC-CchHhhc---CCCcCCcEEEecchhhhc
Confidence 889999999999999999 999999999999999999999998775221 1222211 122466899999999998
Q ss_pred CCCceEEEEeecCHHHHHHHHHhh----cccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 019899 178 LPGFRTGVIYSYNESVLAAAKKLT----RFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRC 253 (334)
Q Consensus 178 ~~g~r~g~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 253 (334)
++| ||+++ ++++++.+.... ..++.++..+.++...++.. + ...+++++++++++++.+.|++.|+++
T Consensus 268 ~~g---G~v~~-~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~---~-~~~~~~~~~~~~~~~l~~~L~~~g~~~ 339 (427)
T 2w8t_A 268 TVG---GFVVS-NHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKL---M-TAHEKRERLWSNARALHGGLKAMGFRL 339 (427)
T ss_dssp SCC---EEEEE-CCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHH---T-SCHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred cCC---CEEEe-CHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHH---h-cCHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 776 99998 677777775542 12345666555555555432 1 135677888899999999998888887
Q ss_pred c-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC-CCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 254 S-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI-EPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 254 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
. .+..+.++|+.++.. .+..++...|++ +||.+.|+..++.. ..+++|++++. .+++++++++++|++++
T Consensus 340 ~~~~~~~~~~~~~~~~~------~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l 412 (427)
T 2w8t_A 340 GTETCDSAIVAVMLEDQ------EQAAMMWQALLD-GGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAG 412 (427)
T ss_dssp SCSSCCSSEEEEEESSH------HHHHHHHHHHHH-TTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEEECCH------HHHHHHHHHHHH-CCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 6 341456788888642 245678888665 69999998876543 24689999985 59999999999999998
Q ss_pred HHc
Q 019899 331 ETC 333 (334)
Q Consensus 331 ~~~ 333 (334)
++.
T Consensus 413 ~~~ 415 (427)
T 2w8t_A 413 RAV 415 (427)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=240.58 Aligned_cols=292 Identities=12% Similarity=0.086 Sum_probs=216.8
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc---CCCCeEEec-CCCCCChh-hhhhhccCcEEEEEeCCCCCCc
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA---DHGNALLVP-SPYYPGFD-RDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~---~~gd~vl~~-~p~~~~~~-~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
+.+++.++...+++++++++|+|+++++..++.++. ++||+|+++ .|.|..+. ..++ ..|.+++.+++. +.++
T Consensus 45 ~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~-~~g~~~~~v~~~-~~~~ 122 (385)
T 2bkw_A 45 KNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLR-SYGAQVDVVRPL-KIGE 122 (385)
T ss_dssp HHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHH-HTTCEEEEECCS-STTS
T ss_pred HHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHH-HcCCceEEEecC-CCCC
Confidence 456666665556677899999999999999999997 899999888 55665553 5566 789999999973 2345
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CcEEEEeccccccccCCCCcchhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK--NIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
.+|++++++++++ .++++|++++|+||||.+.| +++|.++|+++ |+++|+|++|+... ...++
T Consensus 123 ~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~----~~~~~--- 187 (385)
T 2bkw_A 123 SVPLELITEKLSQ-----NSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGC----EEFEF--- 187 (385)
T ss_dssp CCCHHHHHHHHHH-----SCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTT----SCCCT---
T ss_pred CCCHHHHHHHHhc-----CCCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCC----ccccc---
Confidence 7899999999976 26899999999999999999 88999999999 99999999997422 11121
Q ss_pred hhccccCCCcEEEEecccccCC-CCCceEEEEeecCHHHHH-HHH----------------------Hhhc-----ccCC
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLA-AAK----------------------KLTR-----FCSI 206 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~-~~~----------------------~~~~-----~~~~ 206 (334)
.. .+.++++.|+||+++ ++| +||+++ ++++.+ .++ .... .++.
T Consensus 188 ~~-----~~~d~~~~s~~K~~~~~~G--~G~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (385)
T 2bkw_A 188 DE-----WGVDFALTASQKAIGAPAG--LSISLC-SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATP 259 (385)
T ss_dssp TT-----TTCSEEEEESSSTTCCCSC--EEEEEE-CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCC
T ss_pred cc-----cCceEEEecCccccccCCc--ceEEEE-cHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCC
Confidence 11 355688899999774 456 599998 666655 431 1111 1345
Q ss_pred ChHHHHHHHHhhCChHHHHHH-HHHHHHHHHHHHHHHHHHH-HhCCCcccCCC-----ceeEEeeecCCcCCCCChhhHH
Q 019899 207 SAPTQRLLISMLSDTKFIQEY-LETNKRRIKKLYDSFVAGL-KQLGIRCSESS-----AGLYCWADMSGLIPSYSEKGEL 279 (334)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~ 279 (334)
+...+.++..+++. +.+. +.+.+++++++++++.+.| ++.|+++..+. .+.++|+.++. ..
T Consensus 260 ~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~ 327 (385)
T 2bkw_A 260 PVQLINSLDVALKE---ILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---------PP 327 (385)
T ss_dssp CHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC---------HH
T ss_pred CHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC---------HH
Confidence 66666666666543 2222 5677888899999999999 88788776432 46677888763 35
Q ss_pred HHHHHHHHhcCeEEcCCCCcCCCCCCeEEEE-ec----CCCcccHHHHHHHHHHHHHHc
Q 019899 280 ELWDKLLNIAKINVTPGSACHCIEPGWFRCC-FT----SLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 280 ~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~-~~----~~~~~~l~~~l~~l~~~~~~~ 333 (334)
++.+.| .++||.+.+|..+.. .++++|++ ++ ..+++++++++++|+++++++
T Consensus 328 ~~~~~l-~~~gi~v~~g~~~~~-~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 328 DVIAFL-KSHGVVIAGGIHKDI-GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp HHHHHH-HHTTEECBCCCCTTT-GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred HHHHHH-HHCCeEEeCCCCccc-CCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence 778885 458999999876432 35789999 66 259999999999999988764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=243.80 Aligned_cols=276 Identities=14% Similarity=0.140 Sum_probs=210.3
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCce
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKV 98 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 98 (334)
..++++++++++..++.+++++||.|+++.|+|+++...+. ..|.+++.++. .|++++++++++. ++
T Consensus 121 ~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~-------~d~~~le~~l~~~-----~~ 187 (409)
T 3kki_A 121 ECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGAR-YANAQAHPFMH-------NNCDHLRMLIQRH-----GP 187 (409)
T ss_dssp EEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHH-HTTCEEEEECT-------TCHHHHHHHHHHH-----CS
T ss_pred eEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHH-HcCCeEEEecC-------CCHHHHHHHHHhc-----CC
Confidence 45666677899999999999999999999999999999988 88999988873 5899999999874 57
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC--CCCcchhhhhhhccccCCCcEEEEecccccC
Q 019899 99 RGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG--NEEFVSMAEILEAEEVDKDRVHIIYGLSKDL 176 (334)
Q Consensus 99 ~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~ 176 (334)
++|++++|+||||.+.+ +++|.++|++||++||+||+|+.+.++ +........+ ..+.++++.|+||++
T Consensus 188 ~~vi~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~------~~~~di~~~s~sK~~ 258 (409)
T 3kki_A 188 GIIVVDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL------TREVHFMTASLAKTF 258 (409)
T ss_dssp CEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTC------GGGCSEEEEESSSTT
T ss_pred eEEEECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCC------CCCCCEEEeecchhh
Confidence 99999999999999999 999999999999999999999886553 2222222211 134568889999999
Q ss_pred CCCCceEEEEeecCHHHHHHHHHhhcc----cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 019899 177 SLPGFRTGVIYSYNESVLAAAKKLTRF----CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIR 252 (334)
Q Consensus 177 ~~~g~r~g~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 252 (334)
+++| ||+++ ++++.+.+...... .+.++....++...++. .++. .+++++++++++++.+.|++.+++
T Consensus 259 ~~~g---g~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~---~~~~-~~~~~~~~~~~~~l~~~L~~~g~~ 330 (409)
T 3kki_A 259 AYRA---GAIWC-NNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEI---IESA-DNRRQHLDRMARKLRIGLSQLGLT 330 (409)
T ss_dssp CSSC---EEEEE-SSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHH---HHHC-HHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCc---eEEEE-CHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHH---HhcC-HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 8553 99998 66777766653221 23445555555555432 2222 567788999999999999998887
Q ss_pred ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC-CCCCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 253 CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH-CIEPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+. ..+.++|+.++.. .+..++...|++ +||.+.|...+. ...++++|++++. .+++++++++++|++++
T Consensus 331 ~~--~~~~~~~~~~~~~------~~~~~~~~~L~~-~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 331 IR--SESQIIGLETGDE------RNTEKVRDYLES-NGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp CC--CSSSEEEEEEESH------HHHHHHHHHHHH-TTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cC--CCCCEEEEEeCCH------HHHHHHHHHHHH-CCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 65 3667788887653 234568888666 599998755432 2245799999985 58999999999999998
Q ss_pred HHc
Q 019899 331 ETC 333 (334)
Q Consensus 331 ~~~ 333 (334)
++.
T Consensus 402 ~~~ 404 (409)
T 3kki_A 402 NYG 404 (409)
T ss_dssp HHS
T ss_pred hcC
Confidence 763
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=241.79 Aligned_cols=289 Identities=16% Similarity=0.158 Sum_probs=208.1
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh--hhhhhccCcEEEEEeCCCCCCcccc
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD--RDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+.++ .+.+.+.+++++|+++++..++.+++++||+|++++|.|++.. ..+. ..|.+++.++.+ .++.+|
T Consensus 59 ~~la~~~g--~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d 133 (376)
T 3f0h_A 59 KFMLEYAK--APEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCE-IHEIPYVALKLE--HGKKLT 133 (376)
T ss_dssp HHHHHHHT--CCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHH-HTTCCEEEEECC--TTCCCC
T ss_pred HHHHHHhC--CCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHH-HcCCceEEEeCC--CCCCCC
Confidence 44555444 2212234555889999999999999999999999998776644 2344 679999999973 557899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.++| +++|.++|+++|+++|+|++|+.+... ..+..
T Consensus 134 ~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~------ 194 (376)
T 3f0h_A 134 KEKLYEYDNQ------NFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADP----FNMNE------ 194 (376)
T ss_dssp HHHHHTTTTS------CCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHH------
T ss_pred HHHHHHhhcc------CceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCccccCcc----ccccc------
Confidence 9999987754 7899999999999999999 999999999999999999998864321 12211
Q ss_pred cCCCcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHhhc-------------------ccCCChHHHHHHHHhhCC
Q 019899 161 VDKDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKLTR-------------------FCSISAPTQRLLISMLSD 220 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~ 220 (334)
.+.++++.|+||+++ ++| +|++++ ++++.+.+..... .++.+.....++...+..
T Consensus 195 --~~~d~~~~s~~K~l~~~~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~ 269 (376)
T 3f0h_A 195 --CGADVMITGSQKVLACPPG--ISVIVL-APRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKE 269 (376)
T ss_dssp --HTCSEEEEETTTTTCCCSS--CEEEEE-CHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH
T ss_pred --cCccEEEecCcccccCCCc--eEEEEE-CHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHH
Confidence 345688899999997 555 677887 8888887764211 122333333444444322
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcee-EEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 221 TKFIQE--YLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGL-YCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 221 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
+.+ .+.+.+++..++++++.+.|++.++++..+.... ++.+. +.. .+..++...|.++.||.+.||.
T Consensus 270 ---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~l~~~l~~~~gi~v~~g~ 339 (376)
T 3f0h_A 270 ---IKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH-PTT------ANAYDIFLKLKDEYGIWICPNG 339 (376)
T ss_dssp ---HHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE-ESS------SCHHHHHHHHHHHSSEECEECC
T ss_pred ---HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe-CCC------CCHHHHHHHHHHhCCEEEecCc
Confidence 222 3577788888999999999998887765543322 22222 222 1346788887775699999884
Q ss_pred CcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 298 ACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 298 ~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
. ...++++|++++. .+++++++++++|++++++
T Consensus 340 ~--~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 340 G--EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp G--GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred c--ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 3 2346799999974 6999999999999999875
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=248.67 Aligned_cols=289 Identities=17% Similarity=0.184 Sum_probs=213.5
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC----CCCeEEecCCCCCChhhhhh--hccCcEEEEEeCCCCCCccc
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD----HGNALLVPSPYYPGFDRDIR--FRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~----~gd~vl~~~p~~~~~~~~~~--~~~g~~v~~v~~~~~~~~~~ 79 (334)
++.+++.+++++++|++|+|+++|+..++.++.+ +||+|+++.|+|+++...+. ...|.+++.++++ .++.+
T Consensus 74 ~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~ 151 (423)
T 3lvm_A 74 RNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGII 151 (423)
T ss_dssp HHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSCC
T ss_pred HHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccC--CCCcc
Confidence 3444444556788999999999999999998873 79999999999999887764 0459999999984 45678
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++++++ +++++++++|+||||.++| +++|.++|+++|++||+|++|+.... ..... .
T Consensus 152 d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~---~-- 213 (423)
T 3lvm_A 152 DLKELEAAMRD------DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL----PIDLS---Q-- 213 (423)
T ss_dssp CHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS----CCCTT---T--
T ss_pred CHHHHHHhcCC------CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC----CcChh---h--
Confidence 99999999976 7899999999999999999 88899999999999999999875221 11111 1
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh---------cccCCChHHHHHHHHhhCChHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT---------RFCSISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
.+.++++.|+||.+|+.| +|++++ +++..+.+.... ..++.+...+.++..++.. +.+.+.+
T Consensus 214 ---~~~di~~~s~sK~~g~~g--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~ 284 (423)
T 3lvm_A 214 ---LKVDLMSFSGHKIYGPKG--IGALYV-RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMAT 284 (423)
T ss_dssp ---SCCSEEEEESTTTTSCSS--CEEEEE-CBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---HHHHHHH
T ss_pred ---cCCCEEEechHHhcCCCC--eEEEEE-eccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH---HHHHHHH
Confidence 456788999999887666 899998 544444443321 1234456666666555542 2344678
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCcccCCCc---eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC---
Q 019899 231 NKRRIKKLYDSFVAGLKQL-GIRCSESSA---GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE--- 303 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~--- 303 (334)
..++++++++++.+.|+++ ++++..+.+ +.++++.++.. +..++... +.+ |.+.+|..|.+..
T Consensus 285 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~-l~~--i~v~~g~~~~~~~~~~ 354 (423)
T 3lvm_A 285 EMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMA-LKD--LAVSSGSACTSASLEP 354 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTS-------CHHHHHHH-TTT--EECBCCCC-----CCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCC-------CHHHHHHH-Hhh--heeccCccccCCCccc
Confidence 8889999999999999887 787766543 23444555432 33566666 554 8899988765421
Q ss_pred --------------CCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 304 --------------PGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 304 --------------~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++++|++++. .++++++++++.|++++++.
T Consensus 355 ~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 355 SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp CHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3789999985 58899999999999998764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=242.27 Aligned_cols=287 Identities=15% Similarity=0.092 Sum_probs=208.8
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh---hhhhhccCc--EEEEEeCCCCCCccccHHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD---RDIRFRTGV--ELIPVHCRSTDNFAFSITALDQA 87 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~---~~~~~~~g~--~v~~v~~~~~~~~~~~~~~l~~~ 87 (334)
++++++++++++| ++++..++.+++++||+|+++.|+|+++. ..++ ..|. .++.++++ ++++.+|+++++++
T Consensus 82 ~g~~~~~i~~~sG-t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~d~~~l~~~ 158 (407)
T 2dkj_A 82 FGAAWANVQPHSG-SQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVN-FSGKLYKVVSYGVR-PDTELIDLEEVRRL 158 (407)
T ss_dssp HTCSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTS-HHHHHSEEEEECCC-TTTSSCCHHHHHHH
T ss_pred hCCCcceEEecch-HHHHHHHHHHhcCCCCEEEEecccccCccchHHHHH-hcCceEEEEecCCC-cccCccCHHHHHHH
Confidence 4455555666665 56999999999999999999999999884 4455 5566 44444432 24678999999999
Q ss_pred HHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccc-cccCCCCcchhhhhhhccccCCCcE
Q 019899 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGG-SIFGNEEFVSMAEILEAEEVDKDRV 166 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (334)
+++. ++++|++++|+|| ...+ +++|.++|+++|+++|+|++|+. +.+.+..... + ...+
T Consensus 159 l~~~-----~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~---~-------~~~d 218 (407)
T 2dkj_A 159 ALEH-----RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP---L-------PYAH 218 (407)
T ss_dssp HHHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC---T-------TTCS
T ss_pred Hhhc-----CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc---c-------cccc
Confidence 9853 7898999899997 6667 89999999999999999999987 4433321111 1 1256
Q ss_pred EEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccC---CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 167 HIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS---ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 167 ~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
+++.|+||++ +|.|+||++++++++.+.+......+. .+.....++..++... ..+++.+..++++++++++.
T Consensus 219 i~~~s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~ 294 (407)
T 2dkj_A 219 VVTSTTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLA 294 (407)
T ss_dssp EEEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH
Confidence 8889999966 577889999944889888876554432 2333333444444321 13456778888999999999
Q ss_pred HHHHhCCCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc----CCCCCCeEEEEecC-----
Q 019899 244 AGLKQLGIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC----HCIEPGWFRCCFTS----- 313 (334)
Q Consensus 244 ~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~----~~~~~~~iRi~~~~----- 313 (334)
+.|++.|+++.. +..++++|++++... .+..++... +.++||.+.+|..+ +...++++|++++.
T Consensus 295 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~ 368 (407)
T 2dkj_A 295 EELARRGYRIVTGGTDNHLFLVDLRPKG-----LTGKEAEER-LDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRG 368 (407)
T ss_dssp HHHHHTTCEEGGGSCSSSEEEEECGGGT-----CCHHHHHHH-HHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTT
T ss_pred HHHHhCCceeecCCCCceEEEEECcccC-----CCHHHHHHH-HHHcCceecCCcCccccccccCCCceeeecccccccC
Confidence 999988888764 356778889887421 134567777 46689999998753 22235789999963
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 019899 314 LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++++++++++|++++++
T Consensus 369 ~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 369 FTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6899999999999998875
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=236.86 Aligned_cols=294 Identities=16% Similarity=0.167 Sum_probs=212.2
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh--hhhccCcEEEEEeCCCCCCccc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD--IRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~--~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
++++.+.+ ++++++|++|+|+++++..++.++.++||+|++++|+|+++... ++ ..|.+++.++. +++.+
T Consensus 55 ~~~l~~~~----g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~g~~~~~v~~---~~~~~ 126 (359)
T 1svv_A 55 ARLIGELL----ERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIE-ATGHKVVTAPC---PDGKL 126 (359)
T ss_dssp HHHHHHHH----TCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHH-HTTCCEEEECC---TTSCC
T ss_pred HHHHHHHh----CCCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHh-cCCCeeEEEeC---CCCee
Confidence 34455444 46788999999999999999999999999999999999998884 66 78999999996 35789
Q ss_pred cHHHHHHHHHHH-HHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc-chhhhhhh
Q 019899 80 SITALDQAFNQA-RKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF-VSMAEILE 157 (334)
Q Consensus 80 ~~~~l~~~l~~~-~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~-~~~~~~~~ 157 (334)
|++++++++++. ..++.++++|++++| ||||.++|.+++++|.++|++||+++|+|++|..+.++..+. .....+.
T Consensus 127 d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~- 204 (359)
T 1svv_A 127 RVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA- 204 (359)
T ss_dssp CHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH-
T ss_pred cHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhh-
Confidence 999999999862 012224899999999 799999999999999999999999999999995543221111 1111110
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cc--cCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RF--CSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
...++++.|++|..+ ..+.|++++ ++++.+.+.... .. +..+.....++..++.... +.+.++
T Consensus 205 -----~~~d~~~~s~~K~g~--~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~ 271 (359)
T 1svv_A 205 -----RLTDMFYIGATKAGG--MFGEALIIL-NDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNL-----FFELGA 271 (359)
T ss_dssp -----HHCSEEEEECTTTTC--SSCEEEEEC-SGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTH-----HHHHHH
T ss_pred -----hcCCEEEEecccCCC--CCceEEEEE-cccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhh-----HHHHHH
Confidence 122367779999643 356799998 777766665432 11 1223333344445555422 356677
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 234 RIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
+++++++++.+.|+..++++..+.+++++|++++ .++...|++++||.+.+.. ...++++|++++.
T Consensus 272 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~ 337 (359)
T 1svv_A 272 HSNKMAAILKAGLEACGIRLAWPSASNQLFPILE-----------NTMIAELNNDFDMYTVEPL---KDGTCIMRLCTSW 337 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEE-----------HHHHHHHTTTEECEEEEEE---TTTEEEEEEECCT
T ss_pred HHHHHHHHHHHHhccCCeEEccCCccceEEEEcC-----------HHHHHHHHHhcCEEEEecc---cCCCceEEEEccC
Confidence 8888899999999555888887788888888775 3778886665599983210 1235689999874
Q ss_pred -CCcccHHHHHHHHHHHHHH
Q 019899 314 -LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 -~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++++++++++|++++++
T Consensus 338 ~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 338 ATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp TCCHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHHHhc
Confidence 6899999999999998765
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-31 Score=233.44 Aligned_cols=270 Identities=12% Similarity=0.074 Sum_probs=203.6
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC-hhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG-FDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~-~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
+++++++|+|+++++..++.++.++ +.+++..+.|.. +...++ ..|.+++.++. +.++.+|+++++ ++
T Consensus 60 ~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~-~~g~~~~~v~~--~~~~~~d~~~l~--~~----- 128 (362)
T 3ffr_A 60 SNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFYEFAG-ELGREAYKEEA--AFGKGFYPADIT--VP----- 128 (362)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHHHHHH-HTTCEEEEEEC--CTTCCCCGGGCC--CC-----
T ss_pred CCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHHHHHH-HhCCCeEEEec--CCCCCCCHHHHh--cc-----
Confidence 4578999999999999999999877 555555556552 233455 67999999998 455688999998 33
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc-CcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREK-NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
.++++|++++|+||||.++| +++|.++|++| |+++|+|++|+.+... ..+ ...++++.|+|
T Consensus 129 -~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~~----~~~----------~~~d~~~~s~~ 190 (362)
T 3ffr_A 129 -ADAEIICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYPK----FDW----------TKIDSVFFSVQ 190 (362)
T ss_dssp -TTCCEEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSSC----CCT----------TSCSEEEEETT
T ss_pred -CCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCcc----cCh----------hHCcEEEEecc
Confidence 38999999999999999999 88899999999 9999999998753321 111 12457889999
Q ss_pred ccCC-CCCceEEEEeecCHHHHHHHHHhhc-----------------------ccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 174 KDLS-LPGFRTGVIYSYNESVLAAAKKLTR-----------------------FCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 174 K~~~-~~g~r~g~i~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
|+++ ++| +|++++ ++++.+.+..... .++.+...+.++..++.... ...+.
T Consensus 191 K~~~~~~G--~g~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~ 265 (362)
T 3ffr_A 191 KCFGLPAG--LGVWIL-NDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDML--QISAD 265 (362)
T ss_dssp STTCCCSC--CEEEEE-EHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH--HHCHH
T ss_pred cccCCCCc--eEEEEE-CHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHH--HccHH
Confidence 9997 677 577777 7787777765432 44566666666666654211 22256
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCcccCC----CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQL-GIRCSES----SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~-g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
+..+++.++++++.+.|+++ |+++..+ ..+.++|+.++. +..++.+.|.+ +||.+.+|..+. .+
T Consensus 266 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~-~gi~~~~g~~~~--~~ 334 (362)
T 3ffr_A 266 GIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--------LPGEINKILEP-FDMAVGAGYGSK--KE 334 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--------CHHHHHHHHGG-GTEEEEECSGGG--TT
T ss_pred HHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--------CHHHHHHHHHH-CCeEEecCcccc--CC
Confidence 77888999999999999998 8877652 235677788875 24678888555 599999986542 46
Q ss_pred CeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 305 GWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 305 ~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+++|++++. .++++++++++.|++++
T Consensus 335 ~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 335 TQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 899999985 58999999999998864
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=241.87 Aligned_cols=290 Identities=16% Similarity=0.131 Sum_probs=196.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----CCCC-eEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----DHGN-ALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNF 77 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----~~gd-~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~ 77 (334)
+++.+++.+++++++|++|+|+++++..++.++. ++|| +|+++.++|+++...+.. ..|.+++.++++ .++
T Consensus 68 l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~ 145 (400)
T 3vax_A 68 AREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG--PSG 145 (400)
T ss_dssp HHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCC--TTC
T ss_pred HHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccC--CCC
Confidence 3444445566778899999999999999999997 8999 999999999988776651 269999999984 466
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
.+|++++++++++ +++++++++|+||||.+.+ +++|.++|+++|+++|+|++|+... ....+ ..
T Consensus 146 ~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~----~~~~~---~~ 209 (400)
T 3vax_A 146 RISVEGVMERLRP------DTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGK----VPGDL---TT 209 (400)
T ss_dssp CCCHHHHHTTCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTT----SGGGG---GS
T ss_pred CcCHHHHHHhcCC------CceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCC----CCcCh---hh
Confidence 7899999999875 7899999999999999999 8999999999999999999997421 11111 11
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEe-ecCHHHH---HHHHHh---------hcccCCChHHHHHHHHhhCChHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIY-SYNESVL---AAAKKL---------TRFCSISAPTQRLLISMLSDTKFI 224 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~-~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~ 224 (334)
. .++++.|+||.+|+.| +|+++ ++++++. ..+... ...++.+...+.++..++.. +
T Consensus 210 -----~-~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~ 278 (400)
T 3vax_A 210 -----P-IDMISISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---F 278 (400)
T ss_dssp -----C-CSEEEEETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---H
T ss_pred -----c-CcEEEEeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---H
Confidence 2 5688899999777555 56666 6442221 111111 11234456666666555542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 225 QEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSA---GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
.+++++.+++++++++++.+.|+..++++..+.+ +.++++.++.. +..++.+.| . +||.+.+|..|+.
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L-~-~gi~v~~g~~~~~ 349 (400)
T 3vax_A 279 EAEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDV-------DAEAFLVTL-K-DLVAVATGSASTS 349 (400)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHH-H-HHHHHTTTTEEEE
T ss_pred HhhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHH-h-cCcEEEecccccC
Confidence 4456788889999999999999843787766554 33555666532 345777774 5 8999999876643
Q ss_pred C-------------C----CCeEEEEe-cC-CCcccHHHHHHHHHHHHHH
Q 019899 302 I-------------E----PGWFRCCF-TS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 ~-------------~----~~~iRi~~-~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
. . ++++|+++ +. .+++++++++++|++++++
T Consensus 350 ~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 350 ASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 0 48999999 74 5899999999999998865
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=231.99 Aligned_cols=291 Identities=12% Similarity=0.112 Sum_probs=207.6
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh--hhhcc--CcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD--IRFRT--GVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~--~~~~~--g~~v~~v~~~~~~~~ 77 (334)
++++.+.++ .+.++++++|+++++..++.++.++||+|+++.|+|+++... +. .. |.+++.+|.+ ++
T Consensus 49 ~~~la~~~g-----~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~---~~ 119 (356)
T 1v72_A 49 KRKFCEIFE-----RDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPE-FFSNGAKLMTVDGP---AA 119 (356)
T ss_dssp HHHHHHHHT-----SCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHH-HHTTSCEEEECCCG---GG
T ss_pred HHHHHHHhC-----CCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHH-HHhCCcEEEEecCC---CC
Confidence 345555443 344699999999999999999999999999999999887766 66 55 9999999862 46
Q ss_pred cccHHHHHH-HHHHHH-HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccccc--CCCCcchhh
Q 019899 78 AFSITALDQ-AFNQAR-KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIF--GNEEFVSMA 153 (334)
Q Consensus 78 ~~~~~~l~~-~l~~~~-~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~--~~~~~~~~~ 153 (334)
.+|++++++ ++++.. .++.++++|++++|+| ||.+++.+++++|.++|++||+++|+|++|..+.. .+... ...
T Consensus 120 ~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~ 197 (356)
T 1v72_A 120 KLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEM 197 (356)
T ss_dssp CCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTT
T ss_pred eEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHh
Confidence 899999999 886410 1123689999999976 99999999999999999999999999999875321 11111 111
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-cCC---ChHHHHHHHHhhCChHHHHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-CSI---SAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.+. .+..+++.|+||+ +. ....||+++ ++++.+.+...... ... +......+...+.... ..
T Consensus 198 ~~~------~~~d~~~~s~sK~-g~-~~G~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~ 263 (356)
T 1v72_A 198 TWK------AGVDALSFGATKN-GV-LAAEAIVLF-NTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDL-----WL 263 (356)
T ss_dssp TGG------GTCCEEEECCGGG-TC-SSCEEEEES-SGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTH-----HH
T ss_pred hhh------hcCCEEEEecccC-CC-cCccEEEEE-CHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhh-----HH
Confidence 111 1223445689998 53 344568887 78887777654322 111 2223333344444322 23
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEE
Q 019899 230 TNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFR 308 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iR 308 (334)
+..+++.++++++.+.|+++ |+++..+.+++++|++++ .++...| .++||.+.||. |+ ++++|
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~l-~~~gi~v~~g~-~~---~~~iR 327 (356)
T 1v72_A 264 RNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD-----------SAMIDAL-LKAGFGFYHDR-WG---PNVVR 327 (356)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-----------HHHHHHH-HHTTCBCBCSS-SS---TTEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC-----------HHHHHHH-HhcCeEEeccc-cC---CCeEE
Confidence 34566778889999999885 888776777888898875 2677775 55799999887 54 67999
Q ss_pred EEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 309 CCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 309 i~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++++. .+++++++++++|++++++.
T Consensus 328 i~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 328 FVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp EECCTTCCHHHHHHHHHHHHHTC---
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 99874 58999999999999987654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=235.31 Aligned_cols=291 Identities=14% Similarity=0.103 Sum_probs=201.9
Q ss_pred CCcEEEecCcHHHHHHHHH---HhcCCCCeEEecCCCCCChhh-hhhhccCcE-------------EEEEeCCCC---CC
Q 019899 17 PSQIVLTAGATPAVEILCF---CLADHGNALLVPSPYYPGFDR-DIRFRTGVE-------------LIPVHCRST---DN 76 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~---~l~~~gd~vl~~~p~~~~~~~-~~~~~~g~~-------------v~~v~~~~~---~~ 76 (334)
+++|++|+|+++++..++. .+.++| +|++++|+|+++.. .+. ..|.+ ++.++++.+ .+
T Consensus 102 ~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~-~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 179 (426)
T 1sff_A 102 AKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLA-LTGKVNPYSAGMGLMPGHVYRALYPCPLHGIS 179 (426)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHH-HSSCCTTTTTTSCCCCSSEEEECCCBGGGTBC
T ss_pred ccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhh-hcCCccccccccCCCCCCcEEeCCCccccccc
Confidence 4899999999999999988 667776 89999999987654 444 44532 667776421 13
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEe-CCCCCcc-cCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILIC-NPANPVG-NIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~-~p~nptG-~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
+.+|+++|++++++.. .+.++++|+++ +++| || .+.+.+++++|.++|++||++||+||+|+++.+.+... .+.
T Consensus 180 ~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~- 255 (426)
T 1sff_A 180 EDDAIASIHRIFKNDA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AME- 255 (426)
T ss_dssp HHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGG-
T ss_pred hHHHHHHHHHHHHhcc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchh-hhh-
Confidence 4579999999987410 01267766653 3366 99 78899999999999999999999999999876654321 111
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
. .+....+.|+||+++. |+|+||+++ ++++++.+.. ....++.+++.+.++.++++..+ + ....
T Consensus 256 ~-------~~~~~di~s~sK~~~~-GlriG~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~---~--~~~~ 321 (426)
T 1sff_A 256 Q-------MGVAPDLTTFAKSIAG-GFPLAGVTG-RAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE---Q--ENLL 321 (426)
T ss_dssp G-------TTSCCSEEEECGGGGT-SSCCEEEEE-EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH---H--TTHH
T ss_pred h-------cCCCCCEEEEcccccC-CCceEEEEE-cHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH---h--cCHH
Confidence 1 1222234599999995 999999999 6777776653 23345678888888887764321 1 1234
Q ss_pred HHHHHHHHHHHHHHHhCC--Cc---ccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCC
Q 019899 233 RRIKKLYDSFVAGLKQLG--IR---CSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g--~~---~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~ 305 (334)
++++++++++.+.|++++ +. ...+. |+++|++++..... ....+..++...|++ +||.+.||..+ ++
T Consensus 322 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~----~~ 395 (426)
T 1sff_A 322 QKANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YN 395 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC----CC
Confidence 556666666666665532 22 22333 67888988542110 012345678888655 79999998753 57
Q ss_pred eEEEEec-CCCcccHHHHHHHHHHHHHHc
Q 019899 306 WFRCCFT-SLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 306 ~iRi~~~-~~~~~~l~~~l~~l~~~~~~~ 333 (334)
++|++++ ..+++++++++++|++++++.
T Consensus 396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 396 VLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 8999987 379999999999999998764
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=231.56 Aligned_cols=296 Identities=14% Similarity=0.131 Sum_probs=205.6
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCC-CChhhhhhhccCcEEEEEeCCCC----C----CccccHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYY-PGFDRDIRFRTGVELIPVHCRST----D----NFAFSITALDQA 87 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~-~~~~~~~~~~~g~~v~~v~~~~~----~----~~~~~~~~l~~~ 87 (334)
.+++++++|+++|+..++.+++++|| +++.|+| ..+...+. ..|.+++.+++.++ + ++.+|+++|+++
T Consensus 90 ~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~-~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~ 166 (456)
T 2ez2_A 90 FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQE-KNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKL 166 (456)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHH-HTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHH
T ss_pred CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHH-HcCCEEEEecccccccccccccccCCCCHHHHHHH
Confidence 35899999999999999999999999 7889999 66677777 88999999987521 1 368899999999
Q ss_pred HHHHHHcCCceeEEEEeCCCC-CcccCCCHHHHHHHHHHHHhcCcEEEEeccccc----------cccCCCCcchhh-hh
Q 019899 88 FNQARKRGVKVRGILICNPAN-PVGNIIPRETLYELLDFAREKNIHVISDEIYGG----------SIFGNEEFVSMA-EI 155 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~n-ptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~----------~~~~~~~~~~~~-~~ 155 (334)
+++.. ..++++|++++|+| |||.+++.+++++|.++|++||++||+||+|+. +.+.+....++. ..
T Consensus 167 i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 244 (456)
T 2ez2_A 167 IDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEM 244 (456)
T ss_dssp HHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHH
T ss_pred HHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhh
Confidence 98631 01358999999988 999999999999999999999999999999986 344443221111 11
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-------cCCChHHHHH-HHHhhCChHHHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-------CSISAPTQRL-LISMLSDTKFIQEY 227 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~l~~~~~~~~~ 227 (334)
.. ..+++++ |++|..+ .| +.||++++++++.+.+...... .+.+.....+ +...+ +.++
T Consensus 245 ~~-----~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~---~~~~-- 311 (456)
T 2ez2_A 245 FS-----YADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR---EAMQ-- 311 (456)
T ss_dssp HT-----TCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH---HHTC--
T ss_pred cc-----cCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHH---HHhH--
Confidence 11 2334444 7888765 66 7899998678888877654322 1223332222 22221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCC---cCCCCChhhHHHHHHHHHHhcCeEEcC-CCCcC---
Q 019899 228 LETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSG---LIPSYSEKGELELWDKLLNIAKINVTP-GSACH--- 300 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~~~--- 300 (334)
....++..++.+++.+.|++.|+++..+.+++++|++++. ..+. .......+...|++++||.+.+ |..|.
T Consensus 312 -~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~ 389 (456)
T 2ez2_A 312 -YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQ-DEFPAQSLAASIYVETGVRSMERGIISAGRN 389 (456)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCG-GGCHHHHHHHHHHHHHSEECEEESHHHHCBC
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCCh-hhccHHHHHHHHHHhcCeeeecccccccccC
Confidence 2333444556678888888778887778888999988752 1111 0011234477765778998765 44331
Q ss_pred ----C---CCCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 301 ----C---IEPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 301 ----~---~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
. ...+++|++++. .+++++++++++|++++++
T Consensus 390 ~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 390 NVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp TTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 123789999984 5899999999999999865
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=228.83 Aligned_cols=278 Identities=14% Similarity=0.072 Sum_probs=193.1
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh---hhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR---DIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
++++++++|+++++..++.++ +||+|+++.|+|+++.. .++ ..|.+++.+ . |+++++++ +
T Consensus 76 ~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~-~~g~~~~~v-~--------d~~~l~~~-~---- 138 (374)
T 2aeu_A 76 NDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCK-IVNAKYFES-D--------KVGEILNK-I---- 138 (374)
T ss_dssp TEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHH-HTTCEEEEE-S--------CHHHHHTT-C----
T ss_pred cceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHH-HcCcEEEEe-C--------CHHHHHhc-C----
Confidence 478999999999999999988 99999999998887654 455 679988887 2 67888776 3
Q ss_pred cCCceeE-EEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccccc-CCCCcchhhhhhhccccCCCcEEEEec
Q 019899 94 RGVKVRG-ILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIF-GNEEFVSMAEILEAEEVDKDRVHIIYG 171 (334)
Q Consensus 94 ~~~~~~~-i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s 171 (334)
.++++ |++++|+||||. +..++++|.++|++||+++|+|++|+.+.. .... .+... .+.++++.|
T Consensus 139 --~~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~--------~~~di~~~S 205 (374)
T 2aeu_A 139 --DKDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ-PPALK--------LGADLVVTS 205 (374)
T ss_dssp --CTTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTC-CCHHH--------HTCSEEEEE
T ss_pred --CCccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccccc-CCccc--------cCCcEEEec
Confidence 27899 999999999997 677799999999999999999999987531 0000 00111 244678899
Q ss_pred ccccCCCCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH----HHHHHHH
Q 019899 172 LSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL----YDSFVAG 245 (334)
Q Consensus 172 ~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 245 (334)
+||++ +|+|+||+++ ++++++.++.....+ +.+++.+.++...+...+ .+.+.+..+..+.. ++.+.+.
T Consensus 206 ~sK~l--~g~~~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (374)
T 2aeu_A 206 TDKLM--EGPRGGLLAG-KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN--LERIRKAFERAKNFDLSKIEKLNKE 280 (374)
T ss_dssp TTSSS--SSCSCEEEEE-EHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred Ccccc--cCcceEEEEE-CHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99986 5679999998 788888887765443 457777777777765422 11112222222222 4556666
Q ss_pred HHhC----CCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCccc
Q 019899 246 LKQL----GIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHED 318 (334)
Q Consensus 246 l~~~----g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~ 318 (334)
|... |+.+. .+.+.++.|.+.+.... ..+..+++..+++++||.+.||..|. ..++++||+++. ..+.+
T Consensus 281 L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~~g~~~~-~~~~~lRi~~~~~~~~~~~ 356 (374)
T 2aeu_A 281 LKAIDDNINIVYERTPTGFVIKRVYKDDTIN---IKKLIEIGFNLLKNYGIITITVAGMP-GASKSLRIDLTSRDAERID 356 (374)
T ss_dssp HTTTCTTEEEEEEECSSEEEEEEEESSHHHH---HHHHHHHHHHHHHHHCEECSTTSSSC-SSCCSEEEETTSGGGGGSC
T ss_pred hhhhhhccCcceeeCCceEEEEeeccccccc---ccchHHHHHHHHHhCCEEEecCCCCC-CCCCeEEEEcCCchHHHHH
Confidence 6552 55554 44444445544432100 01123467777888999999998763 345789999984 24446
Q ss_pred HHHHHHHHHHHHHHc
Q 019899 319 IPLVIERIQKVAETC 333 (334)
Q Consensus 319 l~~~l~~l~~~~~~~ 333 (334)
++++++.+++++++.
T Consensus 357 l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 357 DNYIIKAIVESIKMA 371 (374)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999888764
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=233.23 Aligned_cols=278 Identities=17% Similarity=0.137 Sum_probs=201.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHH---hc---CCC-CeEEecCCCCCChhhhhhhccCc-------E-----
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFC---LA---DHG-NALLVPSPYYPGFDRDIRFRTGV-------E----- 65 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~---l~---~~g-d~vl~~~p~~~~~~~~~~~~~g~-------~----- 65 (334)
+++.+++.+++ ++++++++|+++++..++.. +. ++| |+|++++|+|+.+...+....+. .
T Consensus 75 l~~~la~~~g~-~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (375)
T 2eh6_A 75 LAHKLVKHFWT-EGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPG 153 (375)
T ss_dssp HHHHHHHTSSS-CEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSS
T ss_pred HHHHHHhhcCC-CCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCC
Confidence 34445544555 38999999999999999875 34 678 99999999999876655412221 1
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEecccccccc
Q 019899 66 LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIF 144 (334)
Q Consensus 66 v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~ 144 (334)
+..++. .|++++++++++ ++++|++++|+||||.+. +.+++++|.++|+++|+++|+||+|+++.+
T Consensus 154 ~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~ 220 (375)
T 2eh6_A 154 FSYAKL-------NDIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGR 220 (375)
T ss_dssp EEEECT-------TCHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ceeCCC-------chHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCC
Confidence 333332 488999988874 789999998899999994 688899999999999999999999997554
Q ss_pred CCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChH
Q 019899 145 GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTK 222 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~ 222 (334)
.+... .+..+.. ..+++ |+||.++ +|+|+||+++ ++++++.++. ....++.++..+.++..+++..
T Consensus 221 ~~~~~-~~~~~~~-----~~d~~---s~SK~~~-~g~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 288 (375)
T 2eh6_A 221 TGEFY-AYQHFNL-----KPDVI---ALAKGLG-GGVPIGAILA-REEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV- 288 (375)
T ss_dssp TSSSS-GGGGGTC-----CCSEE---EECGGGG-TTSCCEEEEE-EHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH-
T ss_pred CCcch-hhhhcCC-----CCCEE---EEccccc-CCCCeEEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH-
Confidence 33211 2222211 12222 7889998 7999999998 6677776655 2334566777777776665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
+ +..++++++++++.+.|++.+.... +..|+++|++++.. ..++...|++ +||.+.|+.
T Consensus 289 --~----~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~--------~~~~~~~l~~-~gi~~~~~~----- 347 (375)
T 2eh6_A 289 --E----KLLPHVREVGNYFKEKLKELGKGKV-KGRGLMLGLELERE--------CKDYVLKALE-KGLLINCTA----- 347 (375)
T ss_dssp --H----HHHHHHHHHHHHHHHHHHHTTSSEE-EEETTEEEEECSSC--------CHHHHHHHHH-TTEECEEET-----
T ss_pred --H----HHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEEEEEEEcCc--------HHHHHHHHHH-CCCEEecCC-----
Confidence 1 5667788888999999988765333 33567788888741 2578888654 899998752
Q ss_pred CCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 303 EPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 303 ~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
++++|++++. .+++++++++++|++++
T Consensus 348 -~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 348 -GKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 5789999874 69999999999998763
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-31 Score=236.57 Aligned_cols=282 Identities=14% Similarity=0.132 Sum_probs=205.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC------C-CCeEEecCCCCCChhh-hhhhccCcE-----------
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD------H-GNALLVPSPYYPGFDR-DIRFRTGVE----------- 65 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~------~-gd~vl~~~p~~~~~~~-~~~~~~g~~----------- 65 (334)
+++.+++.++ .+++++++|+++++..++.++.. + +++|++++|+|++... .+. ..|.+
T Consensus 87 l~~~la~~~g--~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-~~g~~~~~~~~~p~~~ 163 (397)
T 2ord_A 87 LAELLSKNTF--GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT-ATGQPKYQKPFEPLVP 163 (397)
T ss_dssp HHHHHHHTTT--SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH-HSBCHHHHGGGCSCCT
T ss_pred HHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh-ccCChhhccccCCCCC
Confidence 3444444443 68999999999999999998753 4 5789999999976544 555 66655
Q ss_pred -EEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccc
Q 019899 66 -LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSI 143 (334)
Q Consensus 66 -v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~ 143 (334)
++.++. .|++++++++++ ++++|++++|+||||. +++.+++++|.++|++||+++|+||+|+++.
T Consensus 164 ~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~ 230 (397)
T 2ord_A 164 GFEYFEF-------NNVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMG 230 (397)
T ss_dssp TEEEECT-------TCHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred CeeEecC-------CCHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence 666664 278999998875 7999999999999999 9999999999999999999999999998776
Q ss_pred cCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCCh
Q 019899 144 FGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDT 221 (334)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 221 (334)
+.+.. ..+..+.. ..+ + .|+||.++ +|+|+||+++ ++++. .++. ....++.+++.+.++..+++..
T Consensus 231 ~~g~~-~~~~~~~~-----~~d-~--~s~sK~~~-~G~r~G~~~~-~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~ 298 (397)
T 2ord_A 231 RTGKL-FAYQKYGV-----VPD-V--LTTAKGLG-GGVPIGAVIV-NERAN-VLEPGDHGTTFGGNPLACRAGVTVIKEL 298 (397)
T ss_dssp TTSSS-SHHHHHTC-----CCS-E--EEECGGGG-TTSCCEEEEE-CSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHH
T ss_pred cCccc-hhhhhhCC-----CCC-e--eeeccccC-CCcCeEEEEE-chHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHH
Confidence 65432 22222221 122 2 27899999 8999999998 44555 5542 2334567888888877776432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 222 KFIQEYLETNKRRIKKLYDSFVAGLKQL--GIRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
+ + .+.+++++++++++.+.|++. +++.. .+..|.++|++++... +..++.+.|++ +||.+.|+.
T Consensus 299 ~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~l~~~l~~-~gi~v~~~~ 366 (397)
T 2ord_A 299 T---K--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV------SNREVATKCFE-NKLLVVPAG 366 (397)
T ss_dssp T---S--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS------CHHHHHHHHHH-TTEECEEET
T ss_pred H---h--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChH------HHHHHHHHHHH-CCCEEccCC
Confidence 2 1 345667777788888888765 34321 1234566778887532 34678888655 899999863
Q ss_pred CcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 298 ACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 298 ~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++++|++++. .+++++++++++|++++++
T Consensus 367 ------~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 367 ------NNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp ------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 5789999763 6999999999999998864
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=238.60 Aligned_cols=294 Identities=15% Similarity=0.160 Sum_probs=213.3
Q ss_pred hhhhhhhcCCCCCCCCcE--EEecCcHHHHHHHHHHhcCCC--------CeEEecCCCCCChhhhhhhccCcEEEEEeCC
Q 019899 3 GFMSQVLGQAVSFDPSQI--VLTAGATPAVEILCFCLADHG--------NALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i--~~~~g~~~~~~~~~~~l~~~g--------d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~ 72 (334)
+++.+.++ ...+++++ ++|+|+++++..++.++.++| |+|+++.|+|.++...++ ..|.+++.++++
T Consensus 146 ~~la~~~g--~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~-~~G~~v~~v~~~ 222 (514)
T 3mad_A 146 AMTAHMLG--GDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQ-YFGIKLVRTPLD 222 (514)
T ss_dssp HHHHHHTT--GGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHH-HHTCEEEEECBC
T ss_pred HHHHHHcC--CCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHH-HcCCeeEEeeeC
Confidence 45555444 33333778 999999999999999987666 899999999999999998 889999999984
Q ss_pred CCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC-----CC
Q 019899 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG-----NE 147 (334)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~-----~~ 147 (334)
.++.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|++||+++|+|++|+++.+. +.
T Consensus 223 --~~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~ 291 (514)
T 3mad_A 223 --ADYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGGFILPWAERLGY 291 (514)
T ss_dssp --TTSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTC
T ss_pred --CCCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEecccccccchhHHhcCC
Confidence 4678999999999976 7999999999999999999 899999999999999999999976541 11
Q ss_pred CcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc------------ccCCChHHHHHHH
Q 019899 148 EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR------------FCSISAPTQRLLI 215 (334)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 215 (334)
....+. .. ..+.++++.|++|+++ .|.++|+++++++.+......... .++.+.....++.
T Consensus 292 ~~~~~~-~~-----~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~ 364 (514)
T 3mad_A 292 PVPPFD-FR-----LEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAW 364 (514)
T ss_dssp CCCCCS-TT-----STTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHH
T ss_pred CCCccc-cc-----CCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHH
Confidence 001111 11 1456788899999875 677899999866655432211110 1122222223333
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
.++... ....+.+..+++.++++++.+.|++. ++++..+..+ ++++..+.. +..++.+.|.+ +||.+
T Consensus 365 aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~-------~~~~l~~~L~~-~Gi~v- 432 (514)
T 3mad_A 365 AAMLSL--GEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL-------NIYQVMEEMAG-RGWRL- 432 (514)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS-------CHHHHHHHHHT-TTCBC-
T ss_pred HHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC-------CHHHHHHHHHh-cCCEe-
Confidence 333221 13445777888889999999999987 7887766655 555655321 34678888555 79987
Q ss_pred CCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHHc
Q 019899 295 PGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 295 ~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~~ 333 (334)
+|..+ ++++|++++. .+++++++++++|++++++.
T Consensus 433 ~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~ 469 (514)
T 3mad_A 433 NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDAVAQV 469 (514)
T ss_dssp EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 44433 4689999873 46799999999999998753
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=232.71 Aligned_cols=304 Identities=13% Similarity=0.049 Sum_probs=185.6
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhhhhhccCc--------------EEEEEe
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRDIRFRTGV--------------ELIPVH 70 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~--------------~v~~v~ 70 (334)
++.+.++|++++|+++++..++..+. .++++|++.+|+|+++........+. ++..++
T Consensus 85 ~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (430)
T 3i4j_A 85 VGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLP 164 (430)
T ss_dssp TTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEEC
T ss_pred CCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcC
Confidence 45677899999999999999998875 45789999999999877654412222 222333
Q ss_pred CCCCCC---ccccHHHHHHHHHHHHHcCCceeEEEEeCCCC-Cccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccC
Q 019899 71 CRSTDN---FAFSITALDQAFNQARKRGVKVRGILICNPAN-PVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFG 145 (334)
Q Consensus 71 ~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~n-ptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~ 145 (334)
.+ +. ...|+++|++++++.. ..++++|++..++| ++|. ..+.+++++|.++|++||++||+||+|.++.+.
T Consensus 165 ~~--~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~ 240 (430)
T 3i4j_A 165 KP--DPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRC 240 (430)
T ss_dssp CC--CTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred CC--cccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence 21 11 2346789999997531 01455444444467 8887 567778999999999999999999999987665
Q ss_pred CCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH------hhcccCCChHHHHHHHHhh
Q 019899 146 NEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK------LTRFCSISAPTQRLLISML 218 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l 218 (334)
+... ...... +....+.++||+++ .| +|+||+++ ++++++.+.. ....++.+++++.++.+++
T Consensus 241 g~~~-~~~~~~-------~~~~di~t~sK~l~-~G~~r~G~~~~-~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 310 (430)
T 3i4j_A 241 GSPL-ALSRWS-------GVTPDIAVLGKGLA-AGYAPLAGLLA-APQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVL 310 (430)
T ss_dssp SSSS-GGGGTT-------TCCCSEEEECGGGT-TTSSCCEEEEE-CHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHH
T ss_pred cchh-hhhhhc-------CCCCcEEEEccccc-CCccccEEEEE-CHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHH
Confidence 5422 111110 11112346899998 69 99999998 8999999875 2345678999998888887
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCC---hhhHHHHHHHHHHhcCeEEc
Q 019899 219 SDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYS---EKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~ 294 (334)
+..+. ++..++.++.....++.+.+.++++ ++....+. |.+++++++....... .....++...++ ++||.+.
T Consensus 311 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~ 387 (430)
T 3i4j_A 311 DIVER-EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGT-GLLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITY 387 (430)
T ss_dssp HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEC------------CHHHHHHHHH-HTTEECC
T ss_pred HHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEE
Confidence 64321 2222333333333333344333333 23333443 4566677753211000 112356778865 5899999
Q ss_pred CCCCcC-CCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 295 PGSACH-CIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 295 ~g~~~~-~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
|+..+. ...++++|++++. .+++++++++++|++++++.
T Consensus 388 ~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 388 PGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp -----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 974322 2235789999884 69999999999999998763
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=233.42 Aligned_cols=269 Identities=17% Similarity=0.167 Sum_probs=200.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCC----------CCeEEecCCCCCChhhhhhhccCc------------EEEEEeCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLADH----------GNALLVPSPYYPGFDRDIRFRTGV------------ELIPVHCRST 74 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~----------gd~vl~~~p~~~~~~~~~~~~~g~------------~v~~v~~~~~ 74 (334)
++++++++|+++++..++..+..+ +|+|+++.|+|+++...+....+. ++..++.
T Consensus 93 ~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 169 (392)
T 3ruy_A 93 KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY--- 169 (392)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT---
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc---
Confidence 689999999999999999877543 689999999998766544312211 2444442
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHH-HHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET-LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~-l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
.|++++++++++ ++++|++++|+||||.+++.++ +++|.++|++||+++|+||+|+++.+.+.... ..
T Consensus 170 ----~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~-~~ 238 (392)
T 3ruy_A 170 ----GDLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFA-CD 238 (392)
T ss_dssp ----TCHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSG-GG
T ss_pred ----ccHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchh-hh
Confidence 278999999874 8999999999999999997666 99999999999999999999987766554321 11
Q ss_pred hhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCChHHHHHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
... . ..+ +.++||.++ +| +|+||+++ ++++.+.+.... ..++.+++.+.++..+++..+ . ++
T Consensus 239 -~~~---~-~~d---~~~~SK~l~-gG~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~ 303 (392)
T 3ruy_A 239 -WDN---V-TPD---MYILGKALG-GGVFPISCAAA-NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLE---E--EK 303 (392)
T ss_dssp -GGT---C-CCS---EEEECGGGG-TTTSCCEEEEE-CHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--TT
T ss_pred -ccC---C-CCC---EEEEchhhh-CChhhhEEEEE-CHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--hh
Confidence 111 1 122 236789986 57 99999998 788877776543 346778888888888876432 1 56
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc---ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 231 NKRRIKKLYDSFVAGLKQLGIR---CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~g~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
..++++++++++.+.|++.+.. ...+.++ ++++.++. +..++...|+ ++||.+.|+. ++++
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~-~~~~~~~~--------~~~~l~~~l~-~~gi~v~~~~------~~~i 367 (392)
T 3ruy_A 304 LTERSLQLGEKLVGQLKEIDNPMITEVRGKGL-FIGIELNE--------PARPYCEQLK-AAGLLCKETH------ENVI 367 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTEEEEEEETT-EEEEEESS--------CSHHHHHHHH-TTTEECCCBT------TTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEeeee-EEEEEEcc--------hHHHHHHHHH-HCCcEEecCC------CCEE
Confidence 7778889999999999887532 2334444 45556664 2357888855 6899999865 5789
Q ss_pred EEEecC-CCcccHHHHHHHHHHHH
Q 019899 308 RCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 308 Ri~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
|++++. .+++++++++++|++++
T Consensus 368 Ri~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 368 RIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999764 68999999999999886
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=225.51 Aligned_cols=266 Identities=14% Similarity=0.133 Sum_probs=189.7
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh----hhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI----RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
+.++++++++++..++.+++++||+|+++.|+|+++...+ . ..|.+++.++.. |++++++++++
T Consensus 81 ~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~-------d~~~l~~~i~~---- 148 (398)
T 2rfv_A 81 AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMP-KFGINVRFVDAA-------KPEEIRAAMRP---- 148 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHH-HTTCEEEEECTT-------SHHHHHHHCCT----
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHH-HcCCEEEEeCCC-------CHHHHHHhcCC----
Confidence 6667777789999999999999999999999999988776 5 689999999862 78999998875
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.+.+.. .. . .+.++++.|+||
T Consensus 149 --~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~~----~-----~~~di~~~s~sK 210 (398)
T 2rfv_A 149 --ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ----PL----Q-----LGADIVVHSVTK 210 (398)
T ss_dssp --TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG----G-----GTCSEEEEETTT
T ss_pred --CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch----h-----hCCcEEEEeCcc
Confidence 7899999999999999999 9999999999999999999998765421 11 1 356788999999
Q ss_pred cCCCCCceE-EEEeecCHHHHH-HHHHhhcc---cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 175 DLSLPGFRT-GVIYSYNESVLA-AAKKLTRF---CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 175 ~~~~~g~r~-g~i~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
+++.+|.|+ ||+++ ++++.+ .++..... ++.++..+.++...++.. ..++ +++.++.+.+.+.|++.
T Consensus 211 ~~~~~g~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~----~~~~~~~~~l~~~l~~~ 282 (398)
T 2rfv_A 211 YINGHGDVIGGIIVG-KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL---GIRM----ERHCENALKIARFLEGH 282 (398)
T ss_dssp TTTCSSCCCCEEEEE-CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH---HHHH----HHHHHHHHHHHHHHHTC
T ss_pred cccCCCCceEEEEEE-CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH---HHHH----HHHHHHHHHHHHHHHcC
Confidence 998899998 99998 667665 56544333 367788888888887653 2222 23444555666666553
Q ss_pred C---------------CcccCC---CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC----------
Q 019899 250 G---------------IRCSES---SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC---------- 301 (334)
Q Consensus 250 g---------------~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------- 301 (334)
+ +++..+ ..+.+++++++.. ..+...+... ++..|+.+.+|..++.
T Consensus 283 ~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~l~~~-~~~~~i~~~~G~~~~li~~~~~~~~~ 356 (398)
T 2rfv_A 283 PSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG-----LEAGRRMINS-VELCLLAVSLGDTETLIQHPASMTHS 356 (398)
T ss_dssp TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-----HHHHHHHHTT-CSSSEECSCCSSSSCEEECHHHHTSS
T ss_pred CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC-----HHHHHHHHHh-CCcceeccCCCCcceeeecccccccc
Confidence 2 222221 1344455687642 0112233333 2334788888865320
Q ss_pred -----------CCCCeEEEEecC-CCcccHHHHHHHHHH
Q 019899 302 -----------IEPGWFRCCFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 302 -----------~~~~~iRi~~~~-~~~~~l~~~l~~l~~ 328 (334)
..++.+|+|++. .++++++++.+.|++
T Consensus 357 ~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 357 PVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp SSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 125799999995 356666666666654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-30 Score=230.28 Aligned_cols=282 Identities=15% Similarity=0.116 Sum_probs=203.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChh-hhhhhccCcE------------EEEE
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFD-RDIRFRTGVE------------LIPV 69 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~-~~~~~~~g~~------------v~~v 69 (334)
+++.+++.++++++++++++|+++++..++.++. .+||+|++++|+|++.. ..+. ..|.+ +..+
T Consensus 92 l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~-~~g~~~~~~~~~p~~~~~~~~ 170 (395)
T 1vef_A 92 FYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLS-VTWEPKYREPFLPLVEPVEFI 170 (395)
T ss_dssp HHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHH-TCCCHHHHGGGCSCSSCEEEE
T ss_pred HHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhh-hcCCcccccccCCCCCCeeEe
Confidence 4444555555678899999999999999998763 57889999999987644 3555 55654 3333
Q ss_pred eCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCC
Q 019899 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEE 148 (334)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~ 148 (334)
+ ..|++++++++++ ++++|+++.++||||.+. +.+++++|.++|++||+++|+||+|+++.+.+..
T Consensus 171 ~-------~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~ 237 (395)
T 1vef_A 171 P-------YNDVEALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR 237 (395)
T ss_dssp C-------TTCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred C-------CCcHHHHHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCch
Confidence 3 1489999998874 788777655588999875 6788999999999999999999999975544432
Q ss_pred cchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHH
Q 019899 149 FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
. .+. ..+ . ... ++ |+||+++ .|+|+||+++ ++++.+.+.. ....++.+++.+.++..+++..+ +
T Consensus 238 ~-~~~-~~~---~-~~d-~~--s~sK~~~-~g~~~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~---~ 303 (395)
T 1vef_A 238 F-AFE-HFG---I-VPD-IL--TLAKALG-GGVPLGVAVM-REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE---R 303 (395)
T ss_dssp S-THH-HHT---C-CCS-EE--EECGGGG-TTSSCEEEEE-EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H
T ss_pred h-Hhh-hcC---C-CCC-EE--EEccccc-CCCceEEEEe-hHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH---h
Confidence 1 111 111 1 122 22 8899998 4999999999 6667766654 23345677788877777765322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQLGIRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
....++++++++++.+.|++.+.+.. .+..|.++|++++.. ..++...|++++||.+.|+. +
T Consensus 304 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~l~~~l~~~~gi~v~~~~------~ 367 (395)
T 1vef_A 304 --TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--------AAPYIARLEKEHRVLALQAG------P 367 (395)
T ss_dssp --HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--------SHHHHHHHHHHHCEECEESS------T
T ss_pred --CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcCh--------HHHHHHHHHHHCCeEEecCC------C
Confidence 34567788888999999988754321 223456788888742 25788886636899998852 5
Q ss_pred CeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 305 GWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 305 ~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+++|++++. .+++++++++++|++++
T Consensus 368 ~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 368 TVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 789999874 68999999999999876
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=227.77 Aligned_cols=276 Identities=14% Similarity=0.124 Sum_probs=202.2
Q ss_pred CCcEEEecCcHHHHHHHHHHhcC-------CC-CeEEecCCCCCChhhhhhhccC------------cEEEEEeCCCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLAD-------HG-NALLVPSPYYPGFDRDIRFRTG------------VELIPVHCRSTDN 76 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~-------~g-d~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~~~~~~~ 76 (334)
.+++++++|+++++..++..+.. +| |+|++++|+|+++........+ .++..+|.
T Consensus 96 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 170 (406)
T 4adb_A 96 ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY----- 170 (406)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----
Confidence 45999999999999999998864 55 9999999999988654441222 24444442
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC--CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII--PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~--~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
.|+++|++++++ ++++|+++ |+||+|.++ +.+++++|.++|++||++||+||+|+++.+.+... ....
T Consensus 171 --~d~~~l~~~l~~------~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~ 240 (406)
T 4adb_A 171 --NDINSASALIDD------STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMH 240 (406)
T ss_dssp --TCHHHHHTTCST------TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHH
T ss_pred --CcHHHHHHHhcC------CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-HHHh
Confidence 378999988874 78988888 999999988 99999999999999999999999999876655432 2222
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh--cccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT--RFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.. . ..+++ |+||.++ +|+|+||+++ ++++.+.+.... ..++.+++.+.++..+++..+. .+..
T Consensus 241 ~~----~-~~d~~---t~sK~~~-~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~ 305 (406)
T 4adb_A 241 YG----V-TPDLL---TTAKALG-GGFPVGALLA-TEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT-----PEML 305 (406)
T ss_dssp HT----C-CCSEE---EECGGGG-TTSCCEEEEE-CHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS-----HHHH
T ss_pred cC----C-CCCEE---Eechhhc-CCCCeEEEEE-cHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-----cCHH
Confidence 21 1 22322 6799999 9999999998 888888776543 3467788888888877653211 3455
Q ss_pred HHHHHHHHHHHHHHHhCCCc----ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEE
Q 019899 233 RRIKKLYDSFVAGLKQLGIR----CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFR 308 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iR 308 (334)
++++++++++.+.|++.+.. ...+..|.++|+.++.... .+..++...|++ +||.+.|+. ++++|
T Consensus 306 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~-~gi~v~~~~------~~~iR 374 (406)
T 4adb_A 306 NGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA----GQAKQISQEAAK-AGVMVLIAG------GNVVR 374 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT----TCHHHHHHHHHH-TTEECEESS------TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH----HHHHHHHHHHHH-CCcEEeecC------CCeEE
Confidence 66777777777777664211 1122246678888876421 134678888555 699998854 57899
Q ss_pred EEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 309 CCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 309 i~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++++. .+++++++++++|++++++.
T Consensus 375 i~~~~~~~~e~i~~~~~~l~~~l~~~ 400 (406)
T 4adb_A 375 FAPALNVSEEEVTTGLDRFAAACEHF 400 (406)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 97664 69999999999999998763
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=236.84 Aligned_cols=297 Identities=13% Similarity=0.089 Sum_probs=210.5
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC-----CC---CeEEecCCCCCChhhhhhhccCcEEEEEeCCCC
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD-----HG---NALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~-----~g---d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~ 74 (334)
+++.+.++ ...+++++++++|+++++..++.++.+ +| |+|+++.|+|+++...+. ..|.+++.+|+++
T Consensus 114 ~~la~~~g--~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~-~~G~~~~~v~~~~- 189 (497)
T 3mc6_A 114 SMVLRMFN--APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY-YFGMKLRHVELDP- 189 (497)
T ss_dssp HHHHHHTT--CCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH-HSCCEEEEECBCT-
T ss_pred HHHHHHhC--CCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH-HcCCeEEEEecCc-
Confidence 44554444 323378999999999999999998854 45 899999999999999998 8999999999853
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC-----CCCc
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG-----NEEF 149 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~-----~~~~ 149 (334)
+++.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+..+ +...
T Consensus 190 ~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~ 260 (497)
T 3mc6_A 190 TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKN 260 (497)
T ss_dssp TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCS
T ss_pred ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccC
Confidence 3678999999999975 7899999999999999999 889999999999999999999864321 1111
Q ss_pred chhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc------------CCChHHHHHHHHh
Q 019899 150 VSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC------------SISAPTQRLLISM 217 (334)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 217 (334)
.+..... ..+.++++.|++|+++ .|.++|+++++++.+..........+ +.+.....++..+
T Consensus 261 ~~~~~~~-----~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aa 334 (497)
T 3mc6_A 261 LPLLDFR-----VPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWAT 334 (497)
T ss_dssp CCCCSTT-----STTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHH
T ss_pred Ccccccc-----CCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHH
Confidence 1001111 1456788889999874 67789999986655443211111111 0111112222222
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC
Q 019899 218 LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
+.... ...+.+..++..++++++.+.|++. |+++..+..+.++++..+. .+..++.+.|. ++||.+.+
T Consensus 335 l~~l~--~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~-------~~~~~l~~~L~-~~Gi~v~~ 404 (497)
T 3mc6_A 335 MVNMG--ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKT-------LNIHELSDRLS-KKGWHFNA 404 (497)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTT-------TTHHHHHHHHH-TTTCBCEE
T ss_pred HHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCC-------CCHHHHHHHHH-hCCEEEec
Confidence 22111 3345677788888999999999994 8887754444444455432 13467888855 47998876
Q ss_pred CCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.. +..+|++++..+++++++++++|++++++.
T Consensus 405 ~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 405 LQK-----PVALHMAFTRLSAHVVDEICDILRTTVQEL 437 (497)
T ss_dssp CCS-----SCCEEEECCTTTTCTHHHHHHHHHHHHHHH
T ss_pred CCC-----CCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 543 346899988679999999999999998764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-29 Score=226.18 Aligned_cols=281 Identities=16% Similarity=0.178 Sum_probs=196.0
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~ 77 (334)
++++.+..+ .+++++++++++++..++. ++++||+|+++.|+|+++... ++ ..|.+++.++..
T Consensus 139 ~~~la~~~g------~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~-~~G~~v~~v~~~----- 205 (464)
T 1ibj_A 139 ESLLAKLDK------ADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVP-RSGVVVKRVNTT----- 205 (464)
T ss_dssp HHHHHHHHT------CSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSG-GGTCEEEEECTT-----
T ss_pred HHHHHHHhC------CCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHH-HcCCEEEEeCCC-----
Confidence 345555444 2478888888999988875 788999999999999998764 34 679999999862
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|.... ...++ .
T Consensus 206 --d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~----~~~~~----~ 266 (464)
T 1ibj_A 206 --KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPV----LSRPL----E 266 (464)
T ss_dssp --SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTT----TCCGG----G
T ss_pred --CHHHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcccc----cCChh----h
Confidence 78999998875 8999999999999999998 9999999999999999999997521 11111 1
Q ss_pred ccccCCCcEEEEecccccCCC-CCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSL-PGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~-~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
.+.++++.|+||+++. .|+++||++++++++.+.+..... .++.++..+.++...++.... .+++....
T Consensus 267 -----~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~~---r~~~~~~~ 338 (464)
T 1ibj_A 267 -----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMAL---RIEKQQEN 338 (464)
T ss_dssp -----TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHH---HHHHHHHH
T ss_pred -----cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHH---HHHHHHHH
Confidence 4678899999999864 488999999965788888876553 345677788877777765321 12222222
Q ss_pred HHHHHHHHHH----------HHHhC-CCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCC---
Q 019899 235 IKKLYDSFVA----------GLKQL-GIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS--- 297 (334)
Q Consensus 235 ~~~~~~~~~~----------~l~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~--- 297 (334)
.....+++.+ .|+++ ++++..+. .|.+++++++. ......+.+. ++..||.+.+|.
T Consensus 339 ~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~------~~~~~~~~~~-L~~~gi~v~~G~~~s 411 (464)
T 1ibj_A 339 ARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS------VALSKHLVET-TKYFSIAVSFGSVKS 411 (464)
T ss_dssp HHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC------HHHHHHHHHH-CSSSEECSCCCSSSC
T ss_pred HHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC------HHHHHHHHHh-cCcceEeecCCCCce
Confidence 2222222221 22222 33333332 23466777742 1122346666 455799888885
Q ss_pred ---------CcCC---------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 298 ---------ACHC---------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 298 ---------~~~~---------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
.++. ..++++|++++ . +++++++++|++++++
T Consensus 412 l~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~--edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 412 LISMPCFMSHASIPAEVREARGLTEDLVRISAG-I--EDVDDLISDLDIAFKT 461 (464)
T ss_dssp EEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-S--SCHHHHHHHHHHHHHS
T ss_pred eeecccccccccCCHHHHHhcCCCcCeEEEEeC-C--CCHHHHHHHHHHHHhh
Confidence 1211 12578999999 3 9999999999999875
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=224.41 Aligned_cols=280 Identities=17% Similarity=0.156 Sum_probs=191.4
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh---hhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR---DIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
+++++++|+++++.+++.++.++||+|+++.|+|.+... ... ..|.+++.+ . ++++.+|++++++++++....
T Consensus 54 ~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~~g~~~~~v-~--~~~~~~d~~~l~~~i~~~~~~ 129 (347)
T 1jg8_A 54 EAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAV-LSGVMPHPV-P--GKNGAMDPDDVRKAIRPRNIH 129 (347)
T ss_dssp SEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHH-HTCCEEEEE-C--EETTEECHHHHHHHSCCSCTT
T ss_pred ceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhh-ccCeEEEEe-c--CCCCccCHHHHHHHhcccccc
Confidence 478888999999999999999999999999999976443 345 679998888 3 334568999999988631000
Q ss_pred CCceeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCcEEEEeccccccc--cCCCCcchhhhhhhccccCCCcEEEEec
Q 019899 95 GVKVRGILICNPANPV-GNIIPRETLYELLDFAREKNIHVISDEIYGGSI--FGNEEFVSMAEILEAEEVDKDRVHIIYG 171 (334)
Q Consensus 95 ~~~~~~i~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s 171 (334)
..++++|++++|+||| |.++|.+++++|+++|+++|++|++|++|..+. +.+. +...+.. ..+ .++.|
T Consensus 130 ~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~----~~d--~~~~s 200 (347)
T 1jg8_A 130 FPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV---PVKEYAG----YAD--SVMFC 200 (347)
T ss_dssp SCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC---CHHHHHH----TCS--EEEEE
T ss_pred ccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC---ChHHhcc----ccc--EEEEe
Confidence 1268999999999999 999999999999999999999999999864311 1121 2222221 023 34458
Q ss_pred ccccCCCCCceEE-EEeecCHHHHHHHHHhhcccC----CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 172 LSKDLSLPGFRTG-VIYSYNESVLAAAKKLTRFCS----ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246 (334)
Q Consensus 172 ~sK~~~~~g~r~g-~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (334)
+||+++++ +| +++. ++++++.+......++ .+...+.+....++. ....+. +..++++++.+.|
T Consensus 201 ~sK~l~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~-~~~~~~~~l~~~L 269 (347)
T 1jg8_A 201 LSKGLCAP---VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTK------MVDRLK-EDHENARFLALKL 269 (347)
T ss_dssp SSSTTCCS---SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH------SSTTHH-HHHHHHHHHHHHH
T ss_pred cccccCCC---ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHH
Confidence 99999743 46 4555 8888877765543332 233333333333321 111111 1234567777778
Q ss_pred HhCCCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHH
Q 019899 247 KQLGIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIE 324 (334)
Q Consensus 247 ~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~ 324 (334)
++.|+++. .+..+.++|++++... .+..++.+.|. ++||.+.++. ++++|++++. .++++++++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~ 337 (347)
T 1jg8_A 270 KEIGYSVNPEDVKTNMVILRTDNLK-----VNAHGFIEALR-NSGVLANAVS------DTEIRLVTHKDVSRNDIEEALN 337 (347)
T ss_dssp HHHTCBCCGGGCCSSEEEEECTTSS-----SCHHHHHHHHH-HHTEECEEEE------TTEEEEECCTTSCHHHHHHHHH
T ss_pred HhcCceeccCCCcceEEEEEccccc-----CCHHHHHHHHH-HCCCEEecCC------CCeEEEEeCCCCCHHHHHHHHH
Confidence 77676642 2334556888887410 13467888865 5899998742 4689999863 69999999999
Q ss_pred HHHHHHHHc
Q 019899 325 RIQKVAETC 333 (334)
Q Consensus 325 ~l~~~~~~~ 333 (334)
+|++++++.
T Consensus 338 ~l~~~l~~~ 346 (347)
T 1jg8_A 338 IFEKLFRKF 346 (347)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998753
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=227.99 Aligned_cols=305 Identities=13% Similarity=0.097 Sum_probs=201.8
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-----C---CCCeEEecCCCCCChhhhhhhccC----------
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-----D---HGNALLVPSPYYPGFDRDIRFRTG---------- 63 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-----~---~gd~vl~~~p~~~~~~~~~~~~~g---------- 63 (334)
++++.+..+ .+.+ |++|+|+++|+..++..+. . ++++|++.+|+|+++........|
T Consensus 97 a~~l~~~~~----~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 171 (452)
T 3n5m_A 97 AEKLNEWLG----GEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEP 171 (452)
T ss_dssp HHHHHHHHT----SCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCC
T ss_pred HHHHHHhCC----CCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCC
Confidence 455555443 3445 9999999999999999886 5 789999999999876543331211
Q ss_pred --cEEEEEeCCCCCCcc----------ccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhc
Q 019899 64 --VELIPVHCRSTDNFA----------FSITALDQAFNQARKRGVKVRGILICNP-ANPVGNII-PRETLYELLDFAREK 129 (334)
Q Consensus 64 --~~v~~v~~~~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~-~~~~l~~i~~~~~~~ 129 (334)
..+..++..+..... .++++|++++++. +..++++|+++.+ +| ||.+. +.+.+++|.++|++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~ 248 (452)
T 3n5m_A 172 FASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH 248 (452)
T ss_dssp CCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH
T ss_pred CCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc
Confidence 124444432111111 1289999998721 1126777777777 89 99776 778899999999999
Q ss_pred CcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--------h
Q 019899 130 NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK--------L 200 (334)
Q Consensus 130 ~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~--------~ 200 (334)
|+++|+||+|.++.+.|..+. .. . .+....+.++||.++ .| +|+||+++ ++++++.+.. .
T Consensus 249 ~~llI~DEv~~g~g~~g~~~~-~~-~-------~~~~~di~t~sK~l~-~G~~~ig~~~~-~~~i~~~~~~~~~~~~~~~ 317 (452)
T 3n5m_A 249 GALLISDEVICGFGRTGKAFG-FM-N-------YDVKPDIITMAKGIT-SAYLPLSATAV-KREIYEAFKGKGEYEFFRH 317 (452)
T ss_dssp TCEEEEECTTTTTTTTSSSSG-GG-G-------TTCCCSEEEECGGGG-TTSSCCEEEEE-EHHHHGGGCSSSTTCSCCC
T ss_pred CCEEEEecchhCCCcccccch-hh-h-------cCCCCCEEeeccccc-CCCcceEEEEE-CHHHHHHHhhccCCCCccc
Confidence 999999999998766554221 11 1 111222347899998 59 99999998 8888888743 2
Q ss_pred hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----CC-CcccCCCceeEEeeecCCcCCCC--
Q 019899 201 TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ----LG-IRCSESSAGLYCWADMSGLIPSY-- 273 (334)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g-~~~~~~~~g~~~~~~~~~~~~~~-- 273 (334)
...++.+++++.++.++++..+ + +...++++++.+++.+.|++ ++ +....+. |.++++++.......
T Consensus 318 ~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~ 391 (452)
T 3n5m_A 318 INTFGGNPAACALALKNLEIIE---N--ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGK-GLLVGIELVNDKETKEP 391 (452)
T ss_dssp CCSSTTCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEES-SSCEEEEEEEETTTTEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEEEEEEEecCCcccCC
Confidence 3456778888888888775422 1 22334445555555555544 32 2223333 445566664322111
Q ss_pred -ChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 274 -SEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 274 -~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
......++...++ ++||.+.|+..|....++++||+++. .+++++++++++|++++++
T Consensus 392 ~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 392 IDNDKIASVVNACK-EKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCHHHHHHHHHHHH-HTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHH-HCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 0112346777755 47999999887755557899998764 6999999999999999865
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-29 Score=224.23 Aligned_cols=290 Identities=10% Similarity=0.014 Sum_probs=197.9
Q ss_pred hcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh---hhhhc--cCcEEEEEeCCCCCCccccHHH
Q 019899 9 LGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR---DIRFR--TGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 9 ~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~---~~~~~--~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++++++|++++| ++++..++.+++++||+|+++.|+|.++.. .+. . .+..++.+++ ++++.+|+++
T Consensus 80 la~~~g~~~~~i~~~sG-t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~--~~~~~~d~~~ 155 (417)
T 3n0l_A 80 CKKLFNCKFANVQPNSG-SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVS-SSGKMYESCFYGV--ELDGRIDYEK 155 (417)
T ss_dssp HHHHHTCSEEECCCSSH-HHHHHHHHHHHSCTTCEEEEECC-----------------CCSEEEEECC--CTTSSCCHHH
T ss_pred HHHHhCCCCcceEeccH-HHHHHHHHHHhcCCCCEEEecccccccccchhhhhh-hhcceeeeEeccC--CCCCCcCHHH
Confidence 33334566777888777 799999999999999999999999987655 223 3 3345566665 3566799999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccc-cccCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGG-SIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++. ++++|++++|+| |.+.+ +++|.++|++||+++|+|++|.. ..+.+.....+
T Consensus 156 l~~~i~~~-----~~~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~---------- 215 (417)
T 3n0l_A 156 VREIAKKE-----KPKLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPF---------- 215 (417)
T ss_dssp HHHHHHHH-----CCSEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCT----------
T ss_pred HHHHHHhc-----CCeEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCcc----------
Confidence 99999853 789898888776 88888 99999999999999999999643 22322211111
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc---CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC---SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
...++++.|+||++ +|.|.||++++++++.+.+......+ +.+...+.++..++.. ...+.+.++++++.+++
T Consensus 216 ~~~di~~~s~sK~l--~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~ 291 (417)
T 3n0l_A 216 PYAHVVSSTTHKTL--RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKF--NLSDEWKVYAKQVRTNA 291 (417)
T ss_dssp TTCSEEEEESSTTT--CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHH
T ss_pred ccceEEEeeCcccc--CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHH
Confidence 23457889999988 67788999995588888887654433 3334444444443322 11234467778888899
Q ss_pred HHHHHHHHhCCCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC----CCCCeEEEEecC-
Q 019899 240 DSFVAGLKQLGIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC----IEPGWFRCCFTS- 313 (334)
Q Consensus 240 ~~~~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~~iRi~~~~- 313 (334)
+++.+.|++.|+++.. +..+.++|++++.... +..++... ++++||.+.++..+.. ..++.+|+++..
T Consensus 292 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~ 365 (417)
T 3n0l_A 292 QVLANVLMDRKFKLVSDGTDNHLVLMSFLDREF-----SGKDADLA-LGNAGITANKNTVPGEIRSPFITSGLRLGTPAL 365 (417)
T ss_dssp HHHHHHHHHTTCEEGGGSCSSSEEEEECTTSSS-----CHHHHHHH-HHHTTEECEECCCTTCCSCTTTCSEEEEECHHH
T ss_pred HHHHHHHHhCCceeccCCCCceEEEEEcccCCC-----CHHHHHHH-HHHcCeEEeccccCCCCcccCCCCeeEecCHHH
Confidence 9999999888887654 3345677788764211 23345554 6779999986543321 124679999753
Q ss_pred ----CCcccHHHHHHHHHHHHHH
Q 019899 314 ----LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 ----~~~~~l~~~l~~l~~~~~~ 332 (334)
.++++++++++.|++++++
T Consensus 366 ~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 366 TARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hhCCCCHHHHHHHHHHHHHHHhc
Confidence 4679999999999999864
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=228.40 Aligned_cols=303 Identities=14% Similarity=0.101 Sum_probs=201.3
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhc-------------cCcEEEEEeCC
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFR-------------TGVELIPVHCR 72 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~-------------~g~~v~~v~~~ 72 (334)
.+++.++.++++|++++|+++++..++..+. .++++|++.+|+|++........ .|...+.++..
T Consensus 93 ~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (433)
T 1zod_A 93 RLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFT 172 (433)
T ss_dssp HHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCT
T ss_pred HHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcc
Confidence 3333455678899999999999999998653 34689999999998754432101 23333333321
Q ss_pred CCCCc--------cccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCcEEEEecccccc
Q 019899 73 STDNF--------AFSITALDQAFNQARKRGVKVRGILICNP-ANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGS 142 (334)
Q Consensus 73 ~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~ 142 (334)
....+ .+|+++|++++++. ...+++ +++++| +||||. ..+.+++++|.++|++||+++|+||+|+++
T Consensus 173 ~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~-~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~ 249 (433)
T 1zod_A 173 YRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLA-AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV 249 (433)
T ss_dssp TSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEE-EEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred cccccCCchhhhHHHHHHHHHHHHHhc--CCCCeE-EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 11111 24699999998752 112566 455667 688996 567888999999999999999999999987
Q ss_pred ccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--h--cccCCChHHHHHHHHhh
Q 019899 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--T--RFCSISAPTQRLLISML 218 (334)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l 218 (334)
.+.+... .+. ... . ... +.|+||.++ .|+|+||+++ ++++++.+... . ..++.+++++.++.+++
T Consensus 250 g~~g~~~-~~~-~~~---~-~~d---i~s~sK~~~-~G~~ig~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal 318 (433)
T 1zod_A 250 GRTGTMF-ACQ-RDG---V-TPD---ILTLSKTLG-AGLPLAAIVT-SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVL 318 (433)
T ss_dssp TTTSSSS-THH-HHT---C-CCS---EEEECHHHH-TTSSCEEEEE-CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHH
T ss_pred CcCchHh-HHh-hcC---C-CCC---EEEeccccc-CCCCeeEEEE-hHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHH
Confidence 6544321 111 111 1 112 348999998 5999999999 78888888762 2 44667888888877777
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC-cccCCCceeEEeeecCCcCCCC--ChhhHHHHHHHHHHhcCe
Q 019899 219 SDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GI-RCSESSAGLYCWADMSGLIPSY--SEKGELELWDKLLNIAKI 291 (334)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~-~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi 291 (334)
+..+ + ....++++++++++.+.|+++ +. ....+ .|.++|++++...... ......++...|+ ++||
T Consensus 319 ~~~~---~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv 391 (433)
T 1zod_A 319 DVVQ---R--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRG-RGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGL 391 (433)
T ss_dssp HHHH---H--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTE
T ss_pred HHHH---h--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-EEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCC
Confidence 5321 1 123445556666666666553 22 22233 3566788876421100 0123467888866 5899
Q ss_pred EEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 292 NVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 292 ~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.||..|+ .++++|++++. .+++++++++++|++++++.
T Consensus 392 ~v~~~~~~~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 392 SMNIVQLPG--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp ECCEECCTT--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEeccCCCC--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 999987664 25799998764 69999999999999998763
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=226.63 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=200.3
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc---C----CCCeEEecCCCCCChhhhhhhccC-------------cEE
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLA---D----HGNALLVPSPYYPGFDRDIRFRTG-------------VEL 66 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~---~----~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v 66 (334)
+.+++.+++++++|++++|++++++.++..+. + +||+|++++|+|+++........| .++
T Consensus 93 ~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (429)
T 1s0a_A 93 RKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172 (429)
T ss_dssp HHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCC
T ss_pred HHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCc
Confidence 34444455678999999999999999988653 2 589999999999876442220111 134
Q ss_pred EEEeCCC---CCCc-cccHHHHHHHHHHHHHcCCceeEEEEeCC--CCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccc
Q 019899 67 IPVHCRS---TDNF-AFSITALDQAFNQARKRGVKVRGILICNP--ANPVGN-IIPRETLYELLDFAREKNIHVISDEIY 139 (334)
Q Consensus 67 ~~v~~~~---~~~~-~~~~~~l~~~l~~~~~~~~~~~~i~~~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~ 139 (334)
..++++. ++.+ .+|++++++++++. ..++++| +++| +||||. ..+.+++++|.++|++||+++|+||+|
T Consensus 173 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v-i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~ 248 (429)
T 1s0a_A 173 LFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAV-IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIA 248 (429)
T ss_dssp EEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEE-EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTT
T ss_pred eEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEEE-EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh
Confidence 4455421 1123 58999999999752 1256655 4556 589996 557888999999999999999999999
Q ss_pred cccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh-------hcccCCChHHH
Q 019899 140 GGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL-------TRFCSISAPTQ 211 (334)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~-------~~~~~~~~~~~ 211 (334)
.++.+.+... .+... . . ..+ +.|+||.++ +| +|+||+++ ++++++.+... ...++.|++.+
T Consensus 249 ~~~g~~g~~~-~~~~~-~---~-~~d---~~t~sK~l~-~G~~~iG~~~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~~ 317 (429)
T 1s0a_A 249 TGFGRTGKLF-ACEHA-E---I-APD---ILCLGKALT-GGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLAC 317 (429)
T ss_dssp TTTTTTSSSS-GGGGG-T---C-CCS---EEEECGGGG-TSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHHHH
T ss_pred hCCcccchHH-Hhhhc-C---C-CCC---EEEeccccc-CCCccceEEEe-CHHHHHHhhcCCCcccccCCCCCCCHHHH
Confidence 8765544321 11111 1 1 122 237899998 68 99999998 78888888752 23456788888
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 212 RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
.++.++++..+ + ....++++++++++.+.|+++ ++....+ .|.++|++++... +..++...|+
T Consensus 318 ~a~~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~~~~~~~~------~~~~l~~~l~- 384 (429)
T 1s0a_A 318 AAANASLAILE---S--GDWQQQVADIEVQLREQLAPARDAEMVADVRV-LGAIGVVETTHPV------NMAALQKFFV- 384 (429)
T ss_dssp HHHHHHHHHHH---T--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-ETTEEEEEESSCB------CHHHHHHHHH-
T ss_pred HHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-eeEEEEEEECCcc------cHHHHHHHHH-
Confidence 88877775321 1 134456667778888888764 2222233 3457888887532 2457888866
Q ss_pred hcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 288 IAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 288 ~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++||.+.|. .+++|++++. .+++++++++++|+++++++
T Consensus 385 ~~Gi~v~~~-------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 385 EQGVWIRPF-------GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HTTEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred HCCCEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 589999873 2689999774 69999999999999987654
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=226.44 Aligned_cols=278 Identities=13% Similarity=0.078 Sum_probs=202.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc------CCCCe-EEecCCCCCChhhhhhh---cc--CcEEEEEeCC
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA------DHGNA-LLVPSPYYPGFDRDIRF---RT--GVELIPVHCR 72 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~------~~gd~-vl~~~p~~~~~~~~~~~---~~--g~~v~~v~~~ 72 (334)
+++.+++.+++++++|++|+|+++++..++.++. ++||+ |+++.++|+++...+.. .. |.+++.+++
T Consensus 76 l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~- 154 (416)
T 1qz9_A 76 LGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS- 154 (416)
T ss_dssp HHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-
T ss_pred HHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-
Confidence 4566677778888899999999999998888776 88987 55555678766554330 23 889988884
Q ss_pred CCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.. ....++
T Consensus 155 --------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g----~~~~~~ 213 (416)
T 1qz9_A 155 --------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAG----AVPVDL 213 (416)
T ss_dssp --------GGGHHHHCST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTT----TSCCCH
T ss_pred --------HHHHHHHhCC------CceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEcccccc----CcCCCh
Confidence 6778888764 7899999999999999999 899999999999999999999742 222222
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceE-EEEeecCHHHHHHHHHhh-------------------------cccCC
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVLAAAKKLT-------------------------RFCSI 206 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~~~~~~~~-------------------------~~~~~ 206 (334)
.. .+.++++.|++|+++ +|.++ |++++ ++++.+.++... ..++.
T Consensus 214 ~~--------~~~d~~~~s~~K~l~-~g~~~~g~l~~-~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (416)
T 1qz9_A 214 HQ--------AGADYAIGCTYKYLN-GGPGSQAFVWV-SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQ 283 (416)
T ss_dssp HH--------HTCSEEEECSSSTTC-CCTTCCCEEEE-CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCC
T ss_pred hh--------cCCCEEEecCcccCC-CCCCCeEEEEE-CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCC
Confidence 22 234578889999985 66677 99998 666655544310 11234
Q ss_pred ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCC----ceeEEeeecCCcCCCCChhhH
Q 019899 207 SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESS----AGLYCWADMSGLIPSYSEKGE 278 (334)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~ 278 (334)
+...+.++..+++... ++.+.+..++++++++++.+.|++. |+++..+. .+.++|++++. .
T Consensus 284 ~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~ 352 (416)
T 1qz9_A 284 PITSLAMVECGLDVFA--QTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---------G 352 (416)
T ss_dssp CHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---------H
T ss_pred CHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC---------H
Confidence 5555555555543211 1234667778888899999999886 78876653 24567888763 3
Q ss_pred HHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec--CCCcccHHHHHHHHHHHHHH
Q 019899 279 LELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT--SLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 279 ~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~~l~~~l~~l~~~~~~ 332 (334)
.++...|. ++||.+... .++++|++++ ..+++++++++++|++++++
T Consensus 353 ~~l~~~l~-~~gi~~~~~------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 353 YAVIQALI-DRGVIGDYR------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp HHHHHHHH-TTTEECEEE------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCcEeccC------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 57777755 579987431 2578999997 36999999999999999875
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=226.06 Aligned_cols=274 Identities=14% Similarity=0.104 Sum_probs=197.6
Q ss_pred CCcEEEecCcHHHHHHHHHHhcC-------CC-CeEEecCCCCCChhhh-hhhccCcE------------EEEEeCCCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLAD-------HG-NALLVPSPYYPGFDRD-IRFRTGVE------------LIPVHCRSTD 75 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~-------~g-d~vl~~~p~~~~~~~~-~~~~~g~~------------v~~v~~~~~~ 75 (334)
.+++++++|+++|+..++..+.. +| ++|++++|+|+++... +. ..|.+ +..++.
T Consensus 114 ~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~-~~g~~~~~~~~~p~~~~~~~~~~---- 188 (420)
T 2pb2_A 114 AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVS-VGGQPKYSDGFGPKPADIIHVPF---- 188 (420)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHH-HSSCHHHHTTSSSCCSCEEEECT----
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHH-hcCCccccccCCCCCCCeEEecC----
Confidence 57999999999999999998864 56 5899999999876543 33 44533 555553
Q ss_pred CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 76 NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
.|+++|++++++ ++++|+++.++|++|. +++.+++++|.++|++||+++|+||+|.++.+.+..+ .+..
T Consensus 189 ---~d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~-~~~~ 258 (420)
T 2pb2_A 189 ---NDLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMH 258 (420)
T ss_dssp ---TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHH
T ss_pred ---CCHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH-HHHh
Confidence 278999998875 7898888777888884 6899999999999999999999999998776655432 1111
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
. + . ..+++ |+||.++ +|+|+||+++ ++++.+.+.. ....++.|++.+.++.+.++..+. ++..
T Consensus 259 ~-~---~-~~dii---t~sK~l~-~G~~iG~~~~-~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-----~~~~ 323 (420)
T 2pb2_A 259 Y-G---V-TPDIL---TSAKALG-GGFPVSAMLT-TQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-----PEVL 323 (420)
T ss_dssp H-T---C-CCSEE---EECGGGG-TTSCCEEEEE-CHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSS-----HHHH
T ss_pred c-C---C-CCCeE---Eeccccc-CCCceEEEEE-hHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-----ccHH
Confidence 1 1 1 22222 7899999 8999999999 6777776654 344567888888887777643221 2345
Q ss_pred HHHHHHHHHHHHHHHhC--CCcc---cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeE
Q 019899 233 RRIKKLYDSFVAGLKQL--GIRC---SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~--g~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~i 307 (334)
++++++++++.+.|++. +++. ..+ .|.+++++++.... .+..++...|++ +||.+.|+. ++++
T Consensus 324 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~----~~~~~l~~~l~~-~Gi~v~~~~------~~~i 391 (420)
T 2pb2_A 324 QGIHTKRQQFVQHLQAIDEQFDIFSDIRG-MGLLIGAELKPKYK----GRARDFLYAGAE-AGVMVLNAG------ADVM 391 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEE-ETTEEEEEECGGGT----TCHHHHHHHHHH-TTEECEESS------TTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cceEEEEEECCCch----HHHHHHHHHHHH-CCCEEEeCC------CCEE
Confidence 56666777777777654 2221 233 35667788864321 134578888655 899998863 5789
Q ss_pred EEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 308 RCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 308 Ri~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
|++++. .+++++++++++|++++++
T Consensus 392 Rl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 392 RFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999763 6999999999999999875
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=227.72 Aligned_cols=291 Identities=16% Similarity=0.139 Sum_probs=194.2
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChh-----------------hhhh
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFD-----------------RDIR 59 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~-----------------~~~~ 59 (334)
+++.+++.+++++++|++|+|+++++..++.++. ++||+|+++.|+|..+. ...+
T Consensus 66 l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~ 145 (432)
T 3a9z_A 66 ARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVE 145 (432)
T ss_dssp HHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHH
Confidence 4444455556678899999999999999999886 58999999999998752 2223
Q ss_pred hccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC---------
Q 019899 60 FRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN--------- 130 (334)
Q Consensus 60 ~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~--------- 130 (334)
..|.+++.+++++ .++.+|+++|++++++ ++++|++++|+||||.++| +++|.++|++++
T Consensus 146 -~~g~~v~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~ 214 (432)
T 3a9z_A 146 -DQVAEVTFVPVSK-VNGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLP 214 (432)
T ss_dssp -TTSCEEEEECCCT-TTSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCC
T ss_pred -hcCcEEEEEecCc-ccCCcCHHHHHHhccC------CceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCC
Confidence 4689999999853 2457899999998875 7899999999999999999 778899999999
Q ss_pred -cEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHH-HHHHHH---------
Q 019899 131 -IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV-LAAAKK--------- 199 (334)
Q Consensus 131 -~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~-~~~~~~--------- 199 (334)
++||+|++|+.+. ...++... +.++++.|+||++| .|+||++++ ++. ...+..
T Consensus 215 ~~~livDea~~~~~----~~~~~~~~--------~~d~~~~s~~K~~g---~~~G~~~~~-~~~~~~~~~~~~~~~~~~~ 278 (432)
T 3a9z_A 215 RVLVHTDAAQALGK----RRVDVEDL--------GVDFLTIVGHKFYG---PRIGALYVR-GVGKLTPLYPMLFGGGQER 278 (432)
T ss_dssp CCEEEEECTTTTTT----SCCCHHHH--------CCSEEEEEGGGTTC---CSCEEEEET-TBTTTBCCCCSCCSSCGGG
T ss_pred ceEEEEEchhhhCC----cccChhhc--------CCCEEEEehhHhcC---CcceEEEEc-cccccCCcCceeecCCccc
Confidence 9999999997632 22233222 23356889999775 358999984 433 222221
Q ss_pred hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc--CC-----CceeEEeeecCCcCC
Q 019899 200 LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCS--ES-----SAGLYCWADMSGLIP 271 (334)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~--~~-----~~g~~~~~~~~~~~~ 271 (334)
....++.+...+.++..++.. +.+++.+..++++++++++.+.|+++ |+++. .+ ..+..+++.++....
T Consensus 279 ~~~~~~~~~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (432)
T 3a9z_A 279 NFRPGTENTPMIAGLGKAADL---VSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL 355 (432)
T ss_dssp GTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC
T ss_pred cccCCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC
Confidence 112245677777776666643 23456778888999999999999884 65432 22 123345566654211
Q ss_pred CCChhhHHHHHHHHHHhcCeEEcCCCCcCCC------------------CCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 272 SYSEKGELELWDKLLNIAKINVTPGSACHCI------------------EPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 272 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~------------------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+..++... + .++.+.+|..|... ..+++|++++. .+++++++++++|++++++
T Consensus 356 -----~~~~~~~~-l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 356 -----RGYMVLAQ-C--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp -----CHHHHHHH-C--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHH-h--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 12344444 2 37877777655331 13789999995 4899999999999999876
Q ss_pred c
Q 019899 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
.
T Consensus 428 ~ 428 (432)
T 3a9z_A 428 L 428 (432)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=221.13 Aligned_cols=272 Identities=17% Similarity=0.225 Sum_probs=194.3
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+++++++|+++|+..++.+++++||+|+++.|+|+++...+.. ..|.+++.++.. |++++++++++
T Consensus 96 ~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~ai~~--- 165 (414)
T 3ndn_A 96 APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-------DLSQWERALSV--- 165 (414)
T ss_dssp CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------CHHHHHHHTSS---
T ss_pred CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-------CHHHHHHhcCC---
Confidence 36889999999999999999999999999999999998877651 389999999862 78999999875
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+...+. .+. . .+.++++.|+|
T Consensus 166 ---~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~----~~~----~-----~g~div~~S~s 226 (414)
T 3ndn_A 166 ---PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ----QGF----P-----LGVDVVVYSGT 226 (414)
T ss_dssp ---CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC----CCG----G-----GTCSEEEEETT
T ss_pred ---CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC----Cch----h-----cCCCeEeccCC
Confidence 7899999999999999998 999999999999999999998742211 111 1 45678899999
Q ss_pred ccCCCCC-ceEEEEeecCHHHHH-HHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 174 KDLSLPG-FRTGVIYSYNESVLA-AAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 174 K~~~~~g-~r~g~i~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
|+++.+| +++|++++ +++... .++.....+ ..++.....+...++. +..+.++..++++.+.+.|++.
T Consensus 227 K~l~~~G~~~~G~vv~-~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~ 298 (414)
T 3ndn_A 227 KHIDGQGRVLGGAILG-DREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLET-------LAIRVQHSNASAQRIAEFLNGH 298 (414)
T ss_dssp TTTTCSSCCCCEEEEE-CHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccCCCCceEEEEEE-CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 9998778 89999998 665554 565433332 2344433333333322 2334455667778888888775
Q ss_pred -CCccc-CC----------------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC----------
Q 019899 250 -GIRCS-ES----------------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC---------- 301 (334)
Q Consensus 250 -g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------- 301 (334)
++..+ .| ..|.+++++++.... ...+....+.+. ++..++.+.+|..+..
T Consensus 299 p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~-~~~~~~~~~~~~-l~~~~~~~s~G~~~sl~~~p~~~~~~ 376 (414)
T 3ndn_A 299 PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED-VAKQRAFEVLDK-MRLIDISNNLGDAKSLVTHPATTTHR 376 (414)
T ss_dssp TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG-GHHHHHHHHHHH-CSSSEECSCCSCSSCEEECGGGTTTC
T ss_pred CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc-ccHHHHHHHHHh-CccceEcCCCCCCCceeeCccccccc
Confidence 22211 11 146678888864200 001234456666 5557777777765422
Q ss_pred -----------CCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 302 -----------IEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 302 -----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
..++.+|+|++ .|+.+++++.|.+++
T Consensus 377 ~~~~~~~~~~g~~~~~iRlsvG---~e~~~dli~dl~~al 413 (414)
T 3ndn_A 377 AMGPEGRAAIGLGDGVVRISVG---LEDTDDLIADIDRAL 413 (414)
T ss_dssp TTHHHHHHHTTCCTTEEEEECC---SSCHHHHHHHHHHHH
T ss_pred cCCHHHHHhcCCCCCeEEEEeC---cCCHHHHHHHHHHhh
Confidence 13578999999 678888888888876
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-30 Score=229.98 Aligned_cols=282 Identities=10% Similarity=0.061 Sum_probs=200.3
Q ss_pred hhhhhcCCCCCCCC-c-EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCCh--hhhhhhccCcEEEEEeCCCC--CCcc
Q 019899 5 MSQVLGQAVSFDPS-Q-IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGF--DRDIRFRTGVELIPVHCRST--DNFA 78 (334)
Q Consensus 5 ~~~~~~~~~~~~~~-~-i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~--~~~~~~~~g~~v~~v~~~~~--~~~~ 78 (334)
+++.+++.++++++ + +++|+|++++++.++.+++++||+|+++.+.+++. ...++ ..| +++.++++.+ .+..
T Consensus 54 ~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-~~g-~~~~v~~~~~~~~~~~ 131 (362)
T 2c0r_A 54 AQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAK-LIG-DTHVAASSEASNYMTL 131 (362)
T ss_dssp HHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-HHS-CEEEEEECGGGTTCSC
T ss_pred HHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHH-HhC-CeEEEecccccccccC
Confidence 34444444556664 6 46779999999999999999999999887665443 34455 678 9999987522 2333
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|.++++ +++ ++++|++++|+||||.+++ ++++| +|+++++|++|+.+.. ..++ ..
T Consensus 132 ~~~~~~~--i~~------~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~----~~~~---~~- 187 (362)
T 2c0r_A 132 PKLQEIQ--LQD------NAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSR----PFDL---NQ- 187 (362)
T ss_dssp CCGGGCC--CCT------TEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSS----CCCG---GG-
T ss_pred CCHHHcc--cCC------CcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhccCC----ccch---hH-
Confidence 4665553 433 7999999999999999743 25554 8999999999986432 1122 11
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--------------hcccCCChHHHHHHHHhhCChHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--------------TRFCSISAPTQRLLISMLSDTKFI 224 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~ 224 (334)
. ++++.|+||++|++| +||+++ ++++++.+... ...++.+...+.++..+++...
T Consensus 188 ----~--d~~~~s~~K~~g~~G--~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-- 256 (362)
T 2c0r_A 188 ----F--GLVYAGAQKNLGPSG--VTVVIV-REDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIE-- 256 (362)
T ss_dssp ----C--SEEEEETTTTTCCSS--CEEEEE-EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--
T ss_pred ----C--cEEEEeccccccCcC--cEEEEE-cHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHH--
Confidence 2 477789999999777 899998 56665444321 2235677788888877775321
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhCC-C-cccCC---CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 225 QE-YLETNKRRIKKLYDSFVAGLKQLG-I-RCSES---SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 225 ~~-~~~~~~~~~~~~~~~~~~~l~~~g-~-~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+. .+++++++++++++++.+.|++++ + ++..+ ..+.++++.++.. .+..++... |+++||.+.||..
T Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-L~~~gi~~~~g~~ 329 (362)
T 2c0r_A 257 ERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE------ELEKEFVKA-SEQEGFVGLKGHR 329 (362)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCH------HHHHHHHHH-HHHTTEESCBCCT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCc------chHHHHHHH-HHHCCCeeccCCC
Confidence 21 467788899999999999999987 6 65322 2344567777632 244677787 5668999888775
Q ss_pred cCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 299 CHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
+ .+++|+|++. .++++++++++.|++++++++
T Consensus 330 ~----~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~~ 362 (362)
T 2c0r_A 330 S----VGGLRASIYNAVPYESCEALVQFMEHFKRSRG 362 (362)
T ss_dssp T----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred C----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5 3579999985 589999999999999988763
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=215.72 Aligned_cols=278 Identities=15% Similarity=0.139 Sum_probs=202.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh----hhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI----RFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+++..+. +++++++|+++|+..++.+++++||+|+++.|+|+++...+ . ..|.+++.++.. |
T Consensus 71 l~~~la~~~g~--~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~-~~g~~~~~v~~~-------d 140 (392)
T 3qhx_A 71 LEAALAAVEDA--AFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFT-GWNVEYTPVALA-------D 140 (392)
T ss_dssp HHHHHHHHTTC--SEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGG-GGTCEEEEECTT-------C
T ss_pred HHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHH-hcCcEEEEeCCC-------C
Confidence 44445444443 47999999999999999999999999999999999877665 4 679999999862 7
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+... .+. .
T Consensus 141 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~----~~~----~--- 200 (392)
T 3qhx_A 141 LDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQ----QPL----S--- 200 (392)
T ss_dssp HHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC----CGG----G---
T ss_pred HHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccC----ChH----H---
Confidence 8999999876 8999999999999999999 999999999999999999999753221 111 1
Q ss_pred cCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.++++.|+||.++.+| ++.||++++++++.+.+...... ...++..+.++...++.. ..+.++..+
T Consensus 201 --~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l-------~~~~~~~~~ 271 (392)
T 3qhx_A 201 --LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL-------VLRMQRHSE 271 (392)
T ss_dssp --GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH-------HHHHHHHHH
T ss_pred --hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH-------HHHHHHHHH
Confidence 456788999999998666 78999999668888888765443 456667766666666552 223445566
Q ss_pred HHHHHHHHHHhC-CCccc-C----------------CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 238 LYDSFVAGLKQL-GIRCS-E----------------SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 238 ~~~~~~~~l~~~-g~~~~-~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
+++.+.+.|+++ .+..+ . ...|.++++.++.. ......+... ++..++.+..|+.+
T Consensus 272 ~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~~~-l~~~~~~~s~G~~~ 345 (392)
T 3qhx_A 272 NAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-----RTAAEQLCAK-TNIFILAESLGSVE 345 (392)
T ss_dssp HHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-----HHHHHHHHHH-CSSSEECSCCCCSS
T ss_pred HHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-----HHHHHHHHHh-CCCceECCCCCCCC
Confidence 677777777765 22111 1 11255677888652 1233455555 56577877777653
Q ss_pred CC------------------CCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 300 HC------------------IEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 300 ~~------------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
+. ..++.+|+|++ .++.++.++.|.+++
T Consensus 346 sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg---~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 346 SLIEHPSAMTHASTAGSQLEVPDDLVRLSVG---IEDVADLLDDLKQAL 391 (392)
T ss_dssp CEEECGGGTSCGGGBTTBCCCCTTEEEEECC---SSCHHHHHHHHHHHH
T ss_pred ceeeCcccccccccCHHHcCCCCCeEEEEec---cCCHHHHHHHHHHHh
Confidence 21 12567999998 567777777777765
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=229.45 Aligned_cols=288 Identities=11% Similarity=0.065 Sum_probs=206.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCC---eEEecCCCCCChhh----hhhhccCcEEE-----EEeCC
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGN---ALLVPSPYYPGFDR----DIRFRTGVELI-----PVHCR 72 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd---~vl~~~p~~~~~~~----~~~~~~g~~v~-----~v~~~ 72 (334)
+++.+++.+++++++|++|+|++++++.++.+++++|+ +|+++.|+|++... .++ ..|.++. .++.
T Consensus 116 l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~-~~G~~~~~~~v~~~~~- 193 (465)
T 3e9k_A 116 IVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQ-LHGLNIEESMRMIKPR- 193 (465)
T ss_dssp HHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHH-HTTCCHHHHEEEECCC-
T ss_pred HHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHH-HcCCcceeeeEEEecC-
Confidence 44555555667889999999999999999999987655 49999999998544 444 5787752 2233
Q ss_pred CCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
++++.+|++++++++++. +.++++|++++|+||||.++| +++|.++|+++|++|++|++|+.. .....+
T Consensus 194 -~~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g----~~~~~~ 262 (465)
T 3e9k_A 194 -EGEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVG----NVELYL 262 (465)
T ss_dssp -TTCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT----TSCCCH
T ss_pred -CCCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcC----CcCCch
Confidence 456788999999999743 127899999999999999999 899999999999999999998752 222233
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc---------------------------ccC
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR---------------------------FCS 205 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~---------------------------~~~ 205 (334)
.. .+.++++.|++|+++..+.++|++++ ++++.+.+..... .++
T Consensus 263 ~~--------~~~D~~~~s~~K~l~~gp~~~g~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt 333 (465)
T 3e9k_A 263 HD--------WGVDFACWCSYKYLNAGAGGIAGAFI-HEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISN 333 (465)
T ss_dssp HH--------HTCCEEEECSSSTTCCCTTCCCEEEE-CGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSC
T ss_pred hh--------cCCCEEEECcccccccCCCceEEEEE-cHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCC
Confidence 22 35568889999999312236789888 6666544321100 013
Q ss_pred CChHHHHHHHHhhCChHHHHH-HHHHHHHHHHHHHHHHHHHHHh-----------CCCcccCCC----ceeEEeeecCCc
Q 019899 206 ISAPTQRLLISMLSDTKFIQE-YLETNKRRIKKLYDSFVAGLKQ-----------LGIRCSESS----AGLYCWADMSGL 269 (334)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-----------~g~~~~~~~----~g~~~~~~~~~~ 269 (334)
.+.....++...+.. +.+ .+++++++..++++++.+.|++ .|+++..|. .|.++++.++.
T Consensus 334 ~~~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~- 409 (465)
T 3e9k_A 334 PPILLVCSLHASLEI---FKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV- 409 (465)
T ss_dssp CCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-
T ss_pred ccHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-
Confidence 444555555555533 222 2677888899999999999987 577777665 25567777762
Q ss_pred CCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEe-cC-CCcccHHHHHHHHHHHHHH
Q 019899 270 IPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCF-TS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 270 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~-~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
. ..++.+.|. ++||.+..+ .++++|+++ +. .+++|++++++.|++++++
T Consensus 410 -~------~~~l~~~L~-~~Gi~v~~~------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 410 -P------NKDVFQELE-KRGVVCDKR------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp -T------TCCHHHHHH-TTTEECEEE------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred -C------HHHHHHHHH-HCCEEEecC------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 1 236777754 579988621 257999998 43 6999999999999999865
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=222.17 Aligned_cols=280 Identities=14% Similarity=0.059 Sum_probs=188.4
Q ss_pred EEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC---hhhhhhhccCc--EEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 21 VLTAGATPAVEILCFCLADHGNALLVPSPYYPG---FDRDIRFRTGV--ELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 21 ~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~---~~~~~~~~~g~--~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
++++|+++++..++.+++++||+|+++.|+|++ +..... ..|. .++.++.. .+++.+|++++++++++.
T Consensus 98 v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~~---- 171 (425)
T 3ecd_A 98 VQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPA-LSGKWFNALQYGVS-RDTMLIDYDQVEALAQQH---- 171 (425)
T ss_dssp CCCSSHHHHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCC-TTTSSCCHHHHHHHHHHH----
T ss_pred eecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhh-hcccceeeeecCCC-cccCccCHHHHHHHHhhc----
Confidence 458889999999999999999999999999987 222222 3344 45556553 245789999999999853
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc-ccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS-IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
++++|++++|+|| ...+ +++|.++|++||+++|+||+|... .+.+.....+ ...++++.|+||
T Consensus 172 -~~~~v~~~~~~~~--~~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~----------~~~di~~~s~sK 235 (425)
T 3ecd_A 172 -KPSLIIAGFSAYP--RKLD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV----------EHAHVVTSTTHK 235 (425)
T ss_dssp -CCSEEEEECSCCC--SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG----------GTCSEEEEESSG
T ss_pred -CCcEEEEccccCC--CcCC---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCch----------hcCcEEEecCCc
Confidence 7899999989886 4555 899999999999999999996432 2332211111 113478899999
Q ss_pred cCCCCCceEEEEeecCHHHHHHHHHhhccc---CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019899 175 DLSLPGFRTGVIYSYNESVLAAAKKLTRFC---SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGI 251 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 251 (334)
++ +|.|.||++++++.+.+.+......+ +.+.....++..++.. ...+.+.++.+++.++++++.+.|++.|+
T Consensus 236 ~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 311 (425)
T 3ecd_A 236 TL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGE--ALTDDFKTYIDRVLANAQALGDVLKAGGV 311 (425)
T ss_dssp GG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 98 56688999996678888776644332 2333333333333221 11234567788888999999999999888
Q ss_pred cccCC-CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc----CCCCcCCCCCCeEEEEecC-----CCcccHHH
Q 019899 252 RCSES-SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT----PGSACHCIEPGWFRCCFTS-----LTHEDIPL 321 (334)
Q Consensus 252 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~~~~~~~iRi~~~~-----~~~~~l~~ 321 (334)
++..+ ..++++|+.++.... +...+... ++++||.+. ||..+....++++|++++. .+++++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~ 385 (425)
T 3ecd_A 312 DLVTGGTDNHLLLVDLRPKGL-----KGAQVEQA-LERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFRE 385 (425)
T ss_dssp EEGGGSCSSSEEEEECGGGTC-----CHHHHHHH-HHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHH
T ss_pred eeccCCCCceEEEEEeCCCCC-----CHHHHHHH-HHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHH
Confidence 87653 467778888764321 23344455 677899999 5443333335689999543 34899999
Q ss_pred HHHHHHHHHHH
Q 019899 322 VIERIQKVAET 332 (334)
Q Consensus 322 ~l~~l~~~~~~ 332 (334)
+++.|++++++
T Consensus 386 ~~~~l~~~l~~ 396 (425)
T 3ecd_A 386 VGRLILEVFEA 396 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998865
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=222.78 Aligned_cols=290 Identities=12% Similarity=0.091 Sum_probs=203.0
Q ss_pred hcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh---hhhccCc--EEEEEeCCCCCCccccHHH
Q 019899 9 LGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD---IRFRTGV--ELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 9 ~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~---~~~~~g~--~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.++++++.+++++| ++++..++.+++++||+|+++.|+|+++... +. ..|. +++.+++++ +++.+|+++
T Consensus 78 la~~~g~~~~~i~~~sG-t~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~~d~~~ 154 (405)
T 2vi8_A 78 AKQLFGAEHANVQPHSG-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVN-FSGVQYNFVAYGVDP-ETHVIDYDD 154 (405)
T ss_dssp HHHHHTCSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTS-HHHHHSEEEEECBCT-TTCSBCHHH
T ss_pred HHHHhCCCceEEEecCc-HHHHHHHHHHhcCCCCEEEEecccccchhcccchhh-hccceeEEEeccccc-ccCCcCHHH
Confidence 33334455444545555 9999999999999999999999999988642 12 3344 777777632 457899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++++. +++++++ +|+|+ |...+ +++|.++|+++|+++|+|++|+.+...... .. ..+ .
T Consensus 155 l~~~i~~~-----~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~-~~~-------~ 215 (405)
T 2vi8_A 155 VREKARLH-----RPKLIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGL-HP-NPV-------P 215 (405)
T ss_dssp HHHHHHHH-----CCSEEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SC-CST-------T
T ss_pred HHHHHHhc-----CCeEEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCc-CC-Ccc-------c
Confidence 99999864 6787766 55443 45556 899999999999999999999853221111 11 111 1
Q ss_pred CcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHhhccc--CC-ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKLTRFC--SI-SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 164 ~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
..++++.|+||+++ +.| ||+++ ++++.+.+......+ +. +.....++..++.... ..++.+..+++.+++
T Consensus 216 ~~di~~~s~sK~~~g~~g---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~ 289 (405)
T 2vi8_A 216 YAHFVTTTTHKTLRGPRG---GMILC-QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL--QDDFKAYAKRVVDNA 289 (405)
T ss_dssp TCSEEEEESSSTTCCCSC---EEEEE-CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCCCCCC---eEEEE-cHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHH
Confidence 23478899999996 555 99998 788888887654333 22 3334444444443211 245677888899999
Q ss_pred HHHHHHHHhCCCcccCC-CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC----cCCCCCCeEEEEecC-
Q 019899 240 DSFVAGLKQLGIRCSES-SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA----CHCIEPGWFRCCFTS- 313 (334)
Q Consensus 240 ~~~~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~----~~~~~~~~iRi~~~~- 313 (334)
+++.+.|++.|+++..+ ..++++|++++... .+..++... +.++||.+.||.. ++...++++|++++.
T Consensus 290 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~ 363 (405)
T 2vi8_A 290 KRLASALQNEGFTLVSGGTDNHLLLVDLRPQQ-----LTGKTAEKV-LDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363 (405)
T ss_dssp HHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT-----CCHHHHHHH-HHHHTEECEEECCTTCSSCTTTCSEEEEECHHH
T ss_pred HHHHHHHHhCCCeEecCCCCceEEEEEccCCC-----CCHHHHHHH-HHHcCceeccCcCccccCCCCCCCceEEeeeee
Confidence 99999999888887754 45788889887421 123567666 5668999998763 232235789999983
Q ss_pred ----CCcccHHHHHHHHHHHHHH
Q 019899 314 ----LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 ----~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++++++++++|++++++
T Consensus 364 ~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 364 TTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTC
T ss_pred eecCCCHHHHHHHHHHHHHHHhc
Confidence 5799999999999998865
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=220.71 Aligned_cols=288 Identities=13% Similarity=0.182 Sum_probs=202.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.++.+ +.|++++| ++++..++.++ .++||+|+++.|+|+++...++ ..|.+++.+++++ +++.+|+++
T Consensus 43 l~~~la~~~~~~-~~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-~~g~~~~~v~~~~-~~~~~d~~~ 118 (388)
T 1b9h_A 43 FEREFAAHHGAA-HALAVTNG-THALELALQVMGVGPGTEVIVPAFTFISSSQAAQ-RLGAVTVPVDVDA-ATYNLDPEA 118 (388)
T ss_dssp HHHHHHHHTTCS-EEEEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-HTTCEEEEECBCT-TTCCBCHHH
T ss_pred HHHHHHHHhCCC-eEEEeCCH-HHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHH-HcCCEEEEEecCC-CcCCCCHHH
Confidence 344444445443 45666655 89999999999 8999999999999999999988 8999999999853 347899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++ ++++|+ |+||||.+.+ +++|.++|+++|++||+|++|+.+. +.+. ++..
T Consensus 119 l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~~~~---~~~~-------- 175 (388)
T 1b9h_A 119 VAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARWQGK---RVGE-------- 175 (388)
T ss_dssp HHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE---EGGG--------
T ss_pred HHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHHHHcCCEEEEecchhcCCccCCe---eccc--------
Confidence 9999865 677665 8999999988 8999999999999999999998632 3221 1111
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHH--HHHHHHhhcc---------------c--CCChHHHHHHHHhhCChHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESV--LAAAKKLTRF---------------C--SISAPTQRLLISMLSDTKF 223 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~--~~~~~~~~~~---------------~--~~~~~~~~~~~~~l~~~~~ 223 (334)
.+ ++.+.||||..+++|.++||++++++.+ .+.+...... . ..+.....++...+
T Consensus 176 ~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~----- 249 (388)
T 1b9h_A 176 LD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQL----- 249 (388)
T ss_dssp SS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH-----
T ss_pred cc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHH-----
Confidence 22 4677888855555666899999855446 5665433211 0 12222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC------CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE------SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
+++.+..++++++++++.+.|+++ ++++.. +.+++++|++++... ..+..++...|. ++||.+.++
T Consensus 250 --~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~-~~gI~v~~~ 322 (388)
T 1b9h_A 250 --ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERRNALVDRLV-EAGLPAFAA 322 (388)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHHHHHHHHHH-HTTCCEEEC
T ss_pred --HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC----cccHHHHHHHHH-HCCCCcccc
Confidence 223456667778889999999887 777654 345788899987521 123467888855 589999876
Q ss_pred CCcCC----------CC-----------------CCeEEEEecC-C-CcccHHHHHHHHHHHHHH
Q 019899 297 SACHC----------IE-----------------PGWFRCCFTS-L-THEDIPLVIERIQKVAET 332 (334)
Q Consensus 297 ~~~~~----------~~-----------------~~~iRi~~~~-~-~~~~l~~~l~~l~~~~~~ 332 (334)
..... .. .+.+|++++. + +++|++++++.|++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 323 FRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp CCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 43110 00 1359999985 7 899999999999998875
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=220.27 Aligned_cols=287 Identities=17% Similarity=0.220 Sum_probs=205.1
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.++.+ ++++++++++++..++.++ +++||+|+++.|+|+++...++ ..|.+++.+++++ +++.+|+++
T Consensus 68 l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~d~~~ 143 (399)
T 2oga_A 68 FEAEFAAYCETD--HAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVS-ATGATPVPVEPHE-DHPTLDPLL 143 (399)
T ss_dssp HHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-HTTCEEEEECBCS-SSSSBCHHH
T ss_pred HHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-HCCCEEEEEecCC-CCCCcCHHH
Confidence 344444444433 6788888899999999999 8999999999999999999888 8899999999853 356899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++ ++++|+ |+||||.+.+ +++|.++|+++|+++|+|++|+.+. +++. . +.
T Consensus 144 l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~---~~------ 199 (399)
T 2oga_A 144 VEKAITP------RTRALL---PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGR---R---IG------ 199 (399)
T ss_dssp HHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTE---E---TT------
T ss_pred HHHhcCC------CCeEEE---EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCe---e---cc------
Confidence 9999875 678666 5689999998 8999999999999999999998653 2211 1 11
Q ss_pred CCcEEEEecc--cccCCCCCceEEEEeecCHHHHHHHHHhhcc--------------cCCChHHHHHHHHhhCChHHHHH
Q 019899 163 KDRVHIIYGL--SKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--------------CSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 163 ~~~~~~~~s~--sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
.-.++++.|+ ||.++.+| +.|+++++++++.+.++..... +..++....++...++..
T Consensus 200 ~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~----- 273 (399)
T 2oga_A 200 AGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL----- 273 (399)
T ss_dssp CTTCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH-----
T ss_pred cccCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH-----
Confidence 1124777888 79999668 8999998668888888764332 234555555554444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC----
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQL-GIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH---- 300 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~---- 300 (334)
.+..++..++.+++.+.|+++ ++++. .+..+.++|+.++-... +..++...| .++||.+.++....
T Consensus 274 --~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L-~~~gI~v~~~~~~~~~~~ 345 (399)
T 2oga_A 274 --DSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTE-----RRDELRSHL-DARGIDTLTHYPVPVHLS 345 (399)
T ss_dssp --HHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECS-----SHHHHHHHH-HHTTBCCBCSCSSCGGGS
T ss_pred --HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECC-----CHHHHHHHH-HHCCCceecCCCCccccc
Confidence 233445556678888888876 67664 34455555533332111 345777775 55899998753210
Q ss_pred -------CC----------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 301 -------CI----------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 301 -------~~----------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.. ..+.+|++++. .+++|++++++.|++++++.
T Consensus 346 ~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 346 PAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp HHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred hhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 00 02579999875 69999999999999998764
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=221.70 Aligned_cols=278 Identities=14% Similarity=0.086 Sum_probs=191.9
Q ss_pred CCcEEEecCcHHHHHHHHHHhc-------CCCCeEEecCCCCCChhhhhhhc------------cCcEEEEEeCCCCCCc
Q 019899 17 PSQIVLTAGATPAVEILCFCLA-------DHGNALLVPSPYYPGFDRDIRFR------------TGVELIPVHCRSTDNF 77 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~-------~~gd~vl~~~p~~~~~~~~~~~~------------~g~~v~~v~~~~~~~~ 77 (334)
.+++++++|+++++..++..+. .++|+|++.+|+|+++....... .+.++..++.
T Consensus 93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 166 (395)
T 3nx3_A 93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY------ 166 (395)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT------
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC------
Confidence 5899999999999999988774 45799999999998765333201 1235555553
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
.|+++|++++++ +++++++..++|++|.+ .+.+++++|.++|++||+++|+||+|.++...+... ....
T Consensus 167 -~d~~~l~~~l~~------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~~~-- 236 (395)
T 3nx3_A 167 -NDISSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF-AYEH-- 236 (395)
T ss_dssp -TCHHHHHTTCCT------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGG--
T ss_pred -CCHHHHHHhccC------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch-hHHh--
Confidence 278999988874 78888887777777776 678889999999999999999999999875544321 1111
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHH-HHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV-LAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
.+....+.|+||.++ .|+|+||+++ ++++ .+.+... ...++.+++.+.++.++++..+. ++..++.++
T Consensus 237 ------~~~~~d~~t~sK~~~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~ 307 (395)
T 3nx3_A 237 ------AQILPDIMTSAKALG-CGLSVGAFVI-NQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNK 307 (395)
T ss_dssp ------GTCCCSEEEECGGGT-TTSCCEEEEE-CHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHH
T ss_pred ------cCCCCCEEEeccccc-CCCceEEEEE-chhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 111222457899998 5999999998 7777 7777653 34567888888888877753221 122233333
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 234 RIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
.....++.+.+.+.+++.....+..|.++|++++... +..++...|+ ++||.+.|+. ++++|++++.
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~l~-~~Gi~v~~~~------~~~iRi~~~~ 374 (395)
T 3nx3_A 308 LTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSV------KVAKVIQKCQ-ENALLLISCG------ENDLRFLPPL 374 (395)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS------CHHHHHHHHH-HTTEECEEET------TTEEEECCCT
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcc------hHHHHHHHHH-HCCCEEecCC------CCEEEEECCC
Confidence 3333333333333333321112234567788887532 2457777855 4799998864 5789999775
Q ss_pred -CCcccHHHHHHHHHHHHHH
Q 019899 314 -LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 -~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++++++++++|++++++
T Consensus 375 ~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 375 ILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 5999999999999999875
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=225.79 Aligned_cols=289 Identities=14% Similarity=0.110 Sum_probs=198.1
Q ss_pred hcCCCCCC-CCcEEEecCcHHHHHHHHHHhcC-CCCeEEecCCCCCChhhhhhhcc-------------CcEEEEEeCCC
Q 019899 9 LGQAVSFD-PSQIVLTAGATPAVEILCFCLAD-HGNALLVPSPYYPGFDRDIRFRT-------------GVELIPVHCRS 73 (334)
Q Consensus 9 ~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l~~-~gd~vl~~~p~~~~~~~~~~~~~-------------g~~v~~v~~~~ 73 (334)
+++.++++ +++|++|+|+++++..++..+.. +||+|++++|+|+++........ ..+++.+|.++
T Consensus 95 la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (419)
T 2eo5_A 95 LVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPN 174 (419)
T ss_dssp HHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCC
T ss_pred HHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCc
Confidence 33334555 78999999999999999987643 48999999999986544221011 23567777632
Q ss_pred CCC--cc------------ccHHHHH-HHHHHHHHcCCceeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCcEEEEe
Q 019899 74 TDN--FA------------FSITALD-QAFNQARKRGVKVRGILICNP-ANPVGN-IIPRETLYELLDFAREKNIHVISD 136 (334)
Q Consensus 74 ~~~--~~------------~~~~~l~-~~l~~~~~~~~~~~~i~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D 136 (334)
... ++ +|+++|+ +++++.. ...+++ +++++| +||||. +.+.+++++|.++|++||+++|+|
T Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~D 252 (419)
T 2eo5_A 175 PYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDD 252 (419)
T ss_dssp SSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 111 11 4688998 8887410 001455 555677 568896 667888999999999999999999
Q ss_pred ccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHH-HhhcccCCChHHHHHH
Q 019899 137 EIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAK-KLTRFCSISAPTQRLL 214 (334)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 214 (334)
|+|.++.+.+... .+ .... . ..+ +.|+||.++ .| +|+||+++ +++++ .+. .....++.|++++.++
T Consensus 253 E~~~~~g~~g~~~-~~-~~~~---~-~~d---~~t~sK~~~-~G~~riG~~~~-~~~~~-~~~~~~~~t~~~n~~~~~aa 320 (419)
T 2eo5_A 253 EVQMGLGRTGKLF-AI-ENFN---T-VPD---VITLAKALG-GGIMPIGATIF-RKDLD-FKPGMHSNTFGGNALACAIG 320 (419)
T ss_dssp CTTTTTTTTSSSS-GG-GGGT---C-CCS---EEEECGGGG-TTTSCCEEEEE-EGGGC-CC------CCCCCHHHHHHH
T ss_pred ccccCCccCcchh-hH-HhcC---C-CCC---EEEeccccc-CCccceEEEEE-chHhh-cCCcccCCCCCCCHHHHHHH
Confidence 9999876554321 11 1111 1 222 237999999 69 99999998 55665 553 2344567899999888
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
.++++.. ++ ..++++++++++.+.|+++ +....+ .|.++|+++++. ..... +...|+ ++||.+.
T Consensus 321 ~aal~~~---~~----~~~~~~~~~~~l~~~L~~~-~~~~~~-~g~~~~i~~~~~-----~~~~~-~~~~l~-~~Gv~v~ 384 (419)
T 2eo5_A 321 SKVIDIV---KD----LLPHVNEIGKIFAEELQGL-ADDVRG-IGLAWGLEYNEK-----KVRDR-IIGESF-KRGLLLL 384 (419)
T ss_dssp HHHHHHH---HH----HHHHHHHHHHHHHHHHTTS-SSEEEE-ETTEEEEECSCH-----HHHHH-HHHHHH-HTTEECE
T ss_pred HHHHHHH---HH----HHHHHHHHHHHHHHHHHHh-hhheEe-eeEEEEEEEecC-----ccHHH-HHHHHH-HCCCEEe
Confidence 8887532 22 6678888899999999876 333333 355667787421 11234 777755 5899999
Q ss_pred CCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 295 PGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 295 ~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
|+. ++++|++++. .+++++++++++|++++++.
T Consensus 385 ~~~------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 385 PAG------RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp EET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 853 5789998774 69999999999999998765
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=227.69 Aligned_cols=292 Identities=14% Similarity=0.092 Sum_probs=202.8
Q ss_pred hhhcCCCCCCCCc----EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh--------hhccC--cEEEEEeCC
Q 019899 7 QVLGQAVSFDPSQ----IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI--------RFRTG--VELIPVHCR 72 (334)
Q Consensus 7 ~~~~~~~~~~~~~----i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~--------~~~~g--~~v~~v~~~ 72 (334)
+++++.+++++++ |++++|+ +++.+++.+++++||+|++++|+|+++.... . ..| .+++.++++
T Consensus 97 ~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~-~~G~~~~~v~~~~~ 174 (483)
T 1rv3_A 97 KRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKIS-ATSIFFESMAYKVN 174 (483)
T ss_dssp HHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCS-HHHHHSEEEEECBC
T ss_pred HHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcc-cccceEEEEECccc
Confidence 3334445566543 7787777 8898889999999999999999998876532 2 334 445555443
Q ss_pred CCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccc-cccCCCCcch
Q 019899 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGG-SIFGNEEFVS 151 (334)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~-~~~~~~~~~~ 151 (334)
+ +++.+|+++|++++++. ++++|++ +++|++ .++| +++|.++|+++|++|++|++|.. +.+.+....+
T Consensus 175 ~-~~~~iD~d~le~~i~~~-----~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p 243 (483)
T 1rv3_A 175 P-DTGYIDYDRLEENARLF-----HPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSP 243 (483)
T ss_dssp T-TTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCG
T ss_pred c-CCCcCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCC
Confidence 2 45789999999999843 8998888 888888 8888 99999999999999999999863 2221211111
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCH--------------HHHHHHHHhhc---ccCCChHHHHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE--------------SVLAAAKKLTR---FCSISAPTQRLL 214 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~--------------~~~~~~~~~~~---~~~~~~~~~~~~ 214 (334)
+ .+.++++.|+||++ .|.|.||++++++ ++.+.+..... .++.+.....++
T Consensus 244 ~----------~~~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal 311 (483)
T 1rv3_A 244 F----------EHCHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGV 311 (483)
T ss_dssp G----------GTCSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHH
T ss_pred C----------CCCcEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHH
Confidence 1 13457889999988 5667899999553 24444433221 223344445555
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEE
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS-AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINV 293 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 293 (334)
..++.... ...+.++.+++.++++++.+.|++.|+++..+. .++++|++++... .+..++... |++.||.+
T Consensus 312 ~~Al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g-----~~~~~~~~~-L~~~gI~v 383 (483)
T 1rv3_A 312 AVALKQAM--TPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKG-----TDGGRAEKV-LEACSIAC 383 (483)
T ss_dssp HHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGT-----CCHHHHHHH-HHHTTEEC
T ss_pred HHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCC-----CCHHHHHHH-HHhCCcEE
Confidence 54443211 234567788899999999999999899877653 3567788886421 123455555 67799999
Q ss_pred c----CCCCcCCCCCCeEEEEecC-CC----cccHHHHHHHHHHHHHH
Q 019899 294 T----PGSACHCIEPGWFRCCFTS-LT----HEDIPLVIERIQKVAET 332 (334)
Q Consensus 294 ~----~g~~~~~~~~~~iRi~~~~-~~----~~~l~~~l~~l~~~~~~ 332 (334)
. ||..+. -.++++||+++. .+ ++|++++++.|.++++.
T Consensus 384 ~~~~~pg~~~~-~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 384 NKNTCPGDKSA-LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EEECCSSCSCT-TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCcC-CCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 8 887432 235799999984 24 89999999999998864
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=214.73 Aligned_cols=278 Identities=15% Similarity=0.155 Sum_probs=195.3
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCccccH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++.++...+.+ +.+++++++++++.++.+++++||+|+++.++|+++... ++ ..|.+++.++.. |+
T Consensus 120 ~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~-~~G~~v~~v~~~-------d~ 189 (445)
T 1qgn_A 120 EEKISALEGAE--STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILP-KMGITATVIDPA-------DV 189 (445)
T ss_dssp HHHHHHHHTCS--EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGG-GGTCEEEEECSS-------CH
T ss_pred HHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHH-HcCCEEEEeCCC-------CH
Confidence 33444334433 445555556999999999999999999999999987764 44 679999999852 79
Q ss_pred HHHHHHHHHHHHcCCce-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKV-RGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~-~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++++++ ++ ++|++++|+||||.+.| +++|.++|+++|+++|+|++|...... .+ +
T Consensus 190 ~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~----~~---~----- 248 (445)
T 1qgn_A 190 GALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ----KA---L----- 248 (445)
T ss_dssp HHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----CT---T-----
T ss_pred HHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC----Cc---c-----
Confidence 999999987 67 99999999999999999 899999999999999999999753321 11 1
Q ss_pred cCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
+.+.++++.|+||.+|..| +++|++++ ++++++.+......++ .++.....+...++. +..+.+++.+
T Consensus 249 -~~g~Div~~S~sK~~gg~gd~~~G~l~~-~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~ 319 (445)
T 1qgn_A 249 -ALGADLVLHSATKFLGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNS 319 (445)
T ss_dssp -TTTCSEEEECTTTTTTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHH
T ss_pred -ccCCEEEEECCcccccccccceEEEEEE-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH-------HHHHHHHHHH
Confidence 1456789999999997554 47999998 7888888876544433 344443444333332 1233345556
Q ss_pred HHHHHHHHHHhC-CC-cccCC----------------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 238 LYDSFVAGLKQL-GI-RCSES----------------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 238 ~~~~~~~~l~~~-g~-~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
+++++.+.|+++ ++ .+..| ..|.++++.++.. ......+... ++..++.+..|..+
T Consensus 320 ~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-----~~~~~~~l~~-l~~~~i~~s~G~~~ 393 (445)
T 1qgn_A 320 TALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-----LLTTAKFVDA-LKIPYIAPSFGGCE 393 (445)
T ss_dssp HHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-----HHHHHHHHHH-CSSSEECSCCCSSS
T ss_pred HHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-----HHHHHHHHHh-CCCceEeccCCCCc
Confidence 677888888776 33 22222 1344567777641 1123344444 44357777777765
Q ss_pred CC---------------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 300 HC---------------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~~---------------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
.. ..++.+|+|++ .||++++++.|++++++
T Consensus 394 sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG---~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 394 SIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG---VEDFDDLKADILQALDS 444 (445)
T ss_dssp CEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred eeeecccccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 31 12478999998 67899999999999875
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-28 Score=221.17 Aligned_cols=299 Identities=16% Similarity=0.209 Sum_probs=202.3
Q ss_pred CcEEEecCcHHHHHHHHHHhcC----CCCe---EEecCCCCCChhhhhhhccCcEEEEEeCCC---C-----CCccccHH
Q 019899 18 SQIVLTAGATPAVEILCFCLAD----HGNA---LLVPSPYYPGFDRDIRFRTGVELIPVHCRS---T-----DNFAFSIT 82 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~----~gd~---vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~---~-----~~~~~~~~ 82 (334)
+++++|+|+++|+..++.++.+ +||+ |+++.+.|..+...+. ..|.+++.++... . .++.+|++
T Consensus 92 ~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 170 (467)
T 1ax4_A 92 DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-LNGCKAINIVTEKAFDSETYDDWKGDFDIK 170 (467)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-HTTCEEEECBCGGGGCTTSCCTTTTCBCHH
T ss_pred CcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh-ccCCceecccccccccccccCCcccccCHH
Confidence 7899999999999999999988 9998 9998666677677777 7898888776421 1 13468999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCcEEEEeccccc---c-------ccCCCCcch
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPV-GNIIPRETLYELLDFAREKNIHVISDEIYGG---S-------IFGNEEFVS 151 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~---~-------~~~~~~~~~ 151 (334)
+|++++++.. ..++++|++++|+||+ |.+++.+++++|.++|++||++||+|+++.. + .+.+. +
T Consensus 171 ~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~---~ 245 (467)
T 1ax4_A 171 KLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA---T 245 (467)
T ss_dssp HHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC---C
T ss_pred HHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC---c
Confidence 9999998631 1268999999999999 8999999999999999999999999998543 0 12222 2
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCC-CceEEEEeecCH-HHHHHHHHhhcc------c-CCChHHHHHHHHhhCChH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLP-GFRTGVIYSYNE-SVLAAAKKLTRF------C-SISAPTQRLLISMLSDTK 222 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~-g~r~g~i~~~~~-~~~~~~~~~~~~------~-~~~~~~~~~~~~~l~~~~ 222 (334)
...+.++ +....++++.|+||.+|++ | |+++.+++ ++.+.+...... + ..+.....++...+....
T Consensus 246 ~~~~~~~--~~~~~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 320 (467)
T 1ax4_A 246 IKEVIFD--MYKYADALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGT 320 (467)
T ss_dssp HHHHHHH--HGGGCSEEEEETTSTTCCSSC---EEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTT
T ss_pred hhhhhhh--hccccceEEEeccccCCCCcc---eEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhh
Confidence 2222100 0001124568999999865 3 77777546 787776644221 1 222222332222222110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcC-CCCc
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTP-GSAC 299 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~-g~~~ 299 (334)
. ++.+ ++..++++++.+.|++.++++..+.+++++|+++...... ....+..++...|++++||.+.| |..+
T Consensus 321 ~-~~~~----~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~ 395 (467)
T 1ax4_A 321 E-EEYL----HYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFL 395 (467)
T ss_dssp C-HHHH----HHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHH
T ss_pred h-hhHH----HHHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccc
Confidence 0 1122 2223556778888877788877788899999984321110 01124567888875779999998 6532
Q ss_pred -CC---------CCCCeEEEEec-C-CCcccHHHHHHHHHHHHHH
Q 019899 300 -HC---------IEPGWFRCCFT-S-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 -~~---------~~~~~iRi~~~-~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+. ...+++|++++ . .+++++++++++|++++++
T Consensus 396 ~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 396 LGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp HCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred cccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 11 01378999998 3 6899999999999988865
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=222.33 Aligned_cols=299 Identities=9% Similarity=-0.003 Sum_probs=197.9
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhhhhhhc------------cCcEEEEEeCC
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDRDIRFR------------TGVELIPVHCR 72 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~------------~g~~v~~v~~~ 72 (334)
.+.+.++|++++|+++|+..++..+.+ ++++|++.+|+|+++....... ....+..++.+
T Consensus 108 ~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 187 (460)
T 3gju_A 108 APKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAP 187 (460)
T ss_dssp SCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCC
T ss_pred CCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCC
Confidence 445778999999999999999988863 5689999999998765433201 11234555532
Q ss_pred CC---CCcccc--------HHHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEecccc
Q 019899 73 ST---DNFAFS--------ITALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYG 140 (334)
Q Consensus 73 ~~---~~~~~~--------~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~ 140 (334)
.. +++..+ +++|++++++.. ..++++|++..++|++|. +.+.+.+++|.++|++||+++|+||+|.
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 265 (460)
T 3gju_A 188 YYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT 265 (460)
T ss_dssp CGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccccCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 11 111222 688888887421 125666666555778887 6678889999999999999999999999
Q ss_pred ccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH---------hhcccCCChHH
Q 019899 141 GSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK---------LTRFCSISAPT 210 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~---------~~~~~~~~~~~ 210 (334)
++.+.|..+ ..... + . .. .+.++||+++ .| +|+||+++ ++++++.+.. ....++.++++
T Consensus 266 g~gr~g~~~-~~~~~-~---~-~p---di~t~sK~l~-gG~~~lg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~ 334 (460)
T 3gju_A 266 GFGRLGTMF-GSDHY-G---I-KP---DLITIAKGLT-SAYAPLSGVIV-ADRVWQVLVQGSDKLGSLGHGWTYSAHPIC 334 (460)
T ss_dssp TTTTTSSSC-HHHHH-T---C-CC---SEEEECGGGT-TTSSCCEEEEE-EHHHHHHHHHHHHHHCSCSCCCTTTTCHHH
T ss_pred CCCcccccc-hHhhc-C---C-CC---Ceeeeehhhc-CCCCCeEEEEE-CHHHHHHHhcccccccccccCCCCCCCHHH
Confidence 876555322 11111 1 1 11 1347899997 56 89999998 8899888862 23456788999
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCceeEEeeecCCcCCCC-----ChhhHHHHHHH
Q 019899 211 QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGI-RCSESSAGLYCWADMSGLIPSY-----SEKGELELWDK 284 (334)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~ 284 (334)
+.++.++++..+. ++..++.++.....++.+.+.+++++. ....+ .|.++++++....... ......++...
T Consensus 335 ~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (460)
T 3gju_A 335 VAAGVANLELIDE-MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRG-DGMLAAVEFVADKDDRVFFDASQKIGPQVATA 412 (460)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEee-eeEEEEEEEccCccccccccchHHHHHHHHHH
Confidence 9888888764321 223344444444455555555555432 22333 3556667776432210 01124467777
Q ss_pred HHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 285 LLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 285 ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+++ +||.+.|+. .++++||+++. .+++++++++++|++++++
T Consensus 413 l~~-~Gv~v~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 413 LAA-SGVIGRAMP-----QGDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp HHH-TTEECEECS-----SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHH-CCeEEecCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 555 799999865 25789999764 6999999999999999875
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=226.88 Aligned_cols=290 Identities=15% Similarity=0.130 Sum_probs=209.3
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh----cCCCC-----eEEecCCCCCChhhhhhhccCcEEEEEeCC
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL----ADHGN-----ALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l----~~~gd-----~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~ 72 (334)
++++.+.++ ++. .+++++|+++++..++.++ .++|| +|+++.|+|+++...++ ..|.+++.++++
T Consensus 113 ~~~la~~~g----~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~-~~G~~vv~v~~~ 186 (474)
T 1wyu_B 113 GEYLKALTG----MDA-ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS-MAGYQVREIPSG 186 (474)
T ss_dssp HHHHHHHHT----CSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH-HTTCEEEEECBC
T ss_pred HHHHHHHHC----CCc-eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHH-HCCCEEEEecCC
Confidence 345555444 333 4668899999998765554 35777 99999999999999888 899999999984
Q ss_pred CCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
.++.+|+++|++++++ ++++|++++| ||+|.+ .+ +++|.++|+++|+++|+|++|..+.++ . ..
T Consensus 187 --~~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~~~---l~~i~~l~~~~g~~li~Dea~~~~~~g-~--~~ 251 (474)
T 1wyu_B 187 --PEGEVDLEALKRELGP------HVAALMLTNP-NTLGLFERR---ILEISRLCKEAGVQLYYDGANLNAIMG-W--AR 251 (474)
T ss_dssp --TTSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCCTT---HHHHHHHHHHHTCEEEEEGGGGGGTTT-T--CC
T ss_pred --CCCCcCHHHHHHhhCC------CceEEEEECC-CCCcccCCC---HHHHHHHHHHcCCEEEEeCchhhhhcc-C--CC
Confidence 4568999999999975 7899999998 689988 35 999999999999999999999865542 1 11
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCC-C---ceEEEEeecCHHHHHHHHH-h--------------------hcccCC
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLP-G---FRTGVIYSYNESVLAAAKK-L--------------------TRFCSI 206 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~-g---~r~g~i~~~~~~~~~~~~~-~--------------------~~~~~~ 206 (334)
... .+.++++.|+||+++.+ | +|+||+++ ++++.+.+.. . ...++.
T Consensus 252 ~~~--------~g~di~~~s~~K~~~~p~g~gG~~~G~~~~-~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (474)
T 1wyu_B 252 PGD--------MGFDVVHLNLHKTFTVPHGGGGPGSGPVGV-KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYG 322 (474)
T ss_dssp HHH--------HTCSEEECCTTTTTCCCCTTSCCCCCCEEE-CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTS
T ss_pred ccc--------CCCcEEEEeCccccccCCCCCCCCeEEEEE-cHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcC
Confidence 111 34568888999999766 3 58999999 6666555531 0 011234
Q ss_pred ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcee-EEeeecCCcCCCCChhhHHHHHHHH
Q 019899 207 SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGL-YCWADMSGLIPSYSEKGELELWDKL 285 (334)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~l 285 (334)
+...+.++..++.... .+.+.+..+++.++++++.+.|++.|+++..+...+ .+|++++.. .+..++..+|
T Consensus 323 ~~~~~~aa~~~l~~~g--~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L 394 (474)
T 1wyu_B 323 NFLALVRAWAYIRTLG--LEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEG------FRALDLAKGL 394 (474)
T ss_dssp CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTT------CCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCC------CCHHHHHHHH
Confidence 5566666666654321 455677788899999999999988887764332222 145565321 2346788886
Q ss_pred HHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 286 LNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 286 l~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
++ +||.+ |+..|+...++++|++++. .+++++++++++|+++++
T Consensus 395 ~~-~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 395 LE-LGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp HH-TTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred HH-CCccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 65 69985 5655543336789999984 489999999999998875
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=222.75 Aligned_cols=283 Identities=12% Similarity=0.065 Sum_probs=190.1
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh---hhhhhccC--cEEEEEeCCCCCCccccHHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD---RDIRFRTG--VELIPVHCRSTDNFAFSITALDQA 87 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~---~~~~~~~g--~~v~~v~~~~~~~~~~~~~~l~~~ 87 (334)
++++++++++++| ++++..++.+++++||+|+++.|+|+++. .... ..| ..++.++. ++++.+|+++++++
T Consensus 89 ~~~~~~~v~~~sG-s~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~--~~~~~~d~~~l~~~ 164 (420)
T 3gbx_A 89 FGADYANVQPHSG-SQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVN-FSGKLYNIVPYGI--DESGKIDYDEMAKL 164 (420)
T ss_dssp HTCSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEEEEC-------------CHHHHSEEEEEEE--CTTCSCCHHHHHHH
T ss_pred hCCCCceeEecCc-HHHHHHHHHHhcCCCCEEEecchhhcceeccchhhh-hcccceeEEeccC--CccCCcCHHHHHHH
Confidence 4556666766665 88999999999999999999999998744 2222 333 34455555 35667999999999
Q ss_pred HHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcE
Q 019899 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRV 166 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 166 (334)
+++. ++++|++++|+||+ ..+ +++|.++|++||+++|+||+|+... +.+.....+ ...+
T Consensus 165 i~~~-----~~~~v~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~----------~~~d 224 (420)
T 3gbx_A 165 AKEH-----KPKMIIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV----------PHAH 224 (420)
T ss_dssp HHHH-----CCSEEEECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST----------TTSS
T ss_pred HHhc-----CCeEEEEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCccc----------ccCC
Confidence 9874 68999998998874 666 8999999999999999999976432 222111111 2345
Q ss_pred EEEecccccCCCCCceEEEEeecC--HHHHHHHHHhhccc---CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 019899 167 HIIYGLSKDLSLPGFRTGVIYSYN--ESVLAAAKKLTRFC---SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241 (334)
Q Consensus 167 ~~~~s~sK~~~~~g~r~g~i~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (334)
+++.|+||+++ |.+.||+++++ +++.+.+......+ +.+...+.++...+.. ..++.+.++++++.+++++
T Consensus 225 i~~~s~sK~~~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~ 300 (420)
T 3gbx_A 225 VVTTTTHKTLA--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKE--AMEPEFKVYQQQVAKNAKA 300 (420)
T ss_dssp EEEEESSGGGC--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHH
T ss_pred EEEeecccCCC--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHH--HHhHhHHHHHHHHHHHHHH
Confidence 88999999994 44459999844 37777776543332 2233333333333211 1123456778888899999
Q ss_pred HHHHHHhCCCcccCC-CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC-------CCCcCCCCCCeEEEEecC
Q 019899 242 FVAGLKQLGIRCSES-SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP-------GSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 242 ~~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-------g~~~~~~~~~~iRi~~~~ 313 (334)
+.+.|++.|+++..+ ..++++|+.++.... +...+... ++++||.+.| +..++ ++.+|++++.
T Consensus 301 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~---~~~iRi~~~~ 371 (420)
T 3gbx_A 301 MVEVFLNRGYKVVSGGTENHLFLLDLVDKNL-----TGKEADAA-LGRANITVNKNSVPNDPKSPFV---TSGIRIGSPA 371 (420)
T ss_dssp HHHHHHHTTCEEGGGSCSSSEEEEECGGGTC-----CHHHHHHH-HHHTTEECEEECCTTCSSCTTT---CSEEEEECHH
T ss_pred HHHHHHhcCCeeccCCCCCeEEEEEcCCCCC-----CHHHHHHH-HHHCCcEeccccCCCCccccCC---CcceEEecch
Confidence 999999888887653 456778888764211 23344444 6778999988 33332 3569999863
Q ss_pred -----CCcccHHHHHHHHHHHHHH
Q 019899 314 -----LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 -----~~~~~l~~~l~~l~~~~~~ 332 (334)
.++++++++++.|++++++
T Consensus 372 ~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 372 VTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hcccCCCHHHHHHHHHHHHHHHhC
Confidence 3578999999999998865
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=218.78 Aligned_cols=275 Identities=15% Similarity=0.152 Sum_probs=199.9
Q ss_pred CcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+++++++|+++++..++.++ +++||+|+++.|+|+++...++ ..|.+++.+++++ +++.+|++++++++++
T Consensus 55 ~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~------ 126 (393)
T 1mdo_A 55 QYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-LLGANPVMVDVDR-DTLMVTPEHIEAAITP------ 126 (393)
T ss_dssp SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-HTTCEEEEECBCT-TTCCBCHHHHHHHCCT------
T ss_pred CcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHH-HCCCEEEEEeccC-CcCCCCHHHHHHhcCC------
Confidence 48999999999999999999 8999999999999999999888 8999999999853 4568999999999875
Q ss_pred ceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc-ccCCCCcchhhhhhhccccCCCcEEEEeccc--
Q 019899 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS-IFGNEEFVSMAEILEAEEVDKDRVHIIYGLS-- 173 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-- 173 (334)
++++|+++ ||||.+.+ +++|.++|+++|+++|+|++|+.+ .+.+. . + + . .++++.|+|
T Consensus 127 ~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~---~-~-----~-~d~~~~S~~k~ 187 (393)
T 1mdo_A 127 QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGR---H---I-G-----A-RGTAIFSFHAI 187 (393)
T ss_dssp TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE---E---T-T-----S-SSEEEEECCTT
T ss_pred CceEEEEe---CCCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECCe---e---c-C-----C-CCeEEEeCCCC
Confidence 78877765 48999988 999999999999999999999863 23221 1 1 0 1 568889999
Q ss_pred ccCCCCCceEEEEeecCHHHHHHHHHhhccc--------------------------CCChHHHHHHHHhhCChHHHHHH
Q 019899 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--------------------------SISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
|.++ |.+.||++++++++.+.++...... ..+++...+....+. .
T Consensus 188 K~l~--~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-------~ 258 (393)
T 1mdo_A 188 KNIT--CAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-------K 258 (393)
T ss_dssp SSSC--SSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH-------T
T ss_pred Cccc--cccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH-------H
Confidence 7664 4589999985688888887543211 112222222222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccC-C-----CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC-
Q 019899 228 LETNKRRIKKLYDSFVAGLKQLGIRCSE-S-----SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH- 300 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~- 300 (334)
+.+..++.+++++++.+.|++.++++.. + .+++++|+.++.... ..+..++...|. ++||.+.+|..+.
T Consensus 259 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~l~-~~gi~v~~~~~~~~ 334 (393)
T 1mdo_A 259 LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARC---GITRDALMASLK-TKGIGTGLHFRAAH 334 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHH---SSCHHHHHHHHH-HTTBCCBCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEeccccc---ccCHHHHHHHHH-hCCCCcccccCccc
Confidence 3344555667788899999887766542 2 345678888873100 013457777754 5899999877541
Q ss_pred -------------CC-----CCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 301 -------------CI-----EPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 301 -------------~~-----~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.. ....+|++++. .+++|++++++.|+++++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 335 TQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp GSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred cChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 00 13479999885 6999999999999998865
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=214.20 Aligned_cols=274 Identities=15% Similarity=0.131 Sum_probs=186.0
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccHHH
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+.+++.++.+ +.++++++++++..++.++.++||+|+++.|+|+++...+. ...|.+++.++. .|+++
T Consensus 5 ~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~ 75 (331)
T 1pff_A 5 GKIAKLEHAE--ACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-------AVPGN 75 (331)
T ss_dssp HHHHHHHTCS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-------TSTTH
T ss_pred HHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-------CCHHH
Confidence 3333334443 44555555899999999999999999999999999877763 147999999885 47888
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-cCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE-KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~-~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+|++|+.+.+. .+. .
T Consensus 76 l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~----~~~----~----- 133 (331)
T 1pff_A 76 IEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT----NPL----D----- 133 (331)
T ss_dssp HHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC----CGG----G-----
T ss_pred HHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC----Chh----h-----
Confidence 9888875 7899999999999999999 9999999999 99999999999864432 111 1
Q ss_pred CCcEEEEecccccCCCCCce-EEEEeecCH-HHHHHHHHhhcc-c--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFR-TGVIYSYNE-SVLAAAKKLTRF-C--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r-~g~i~~~~~-~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.++++.|+||+++.+|.| .||+++ ++ ++.+.++..... + +.++..+.++...+.. + ..+.+...+
T Consensus 134 ~~~d~~~~s~~K~~~~~~~r~~G~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~----~~~~~~~~~ 205 (331)
T 1pff_A 134 LGVDIVVHSATKYINGHTDVVAGLVCS-RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT---L----DMRVKRAAE 205 (331)
T ss_dssp GTCSEEEEETTTTTSSSSSCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH---H----HHHHHHHHH
T ss_pred cCCcEEEEECccccCCCCCceEEEEEe-CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch---H----HHHHHHHHH
Confidence 46788999999999889999 799998 66 888888876554 3 4566666555444432 1 222233334
Q ss_pred HHHHHHHHHHhC---------------CCcccC---CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC-
Q 019899 238 LYDSFVAGLKQL---------------GIRCSE---SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA- 298 (334)
Q Consensus 238 ~~~~~~~~l~~~---------------g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~- 298 (334)
+.+.+.+.+++. ++++.. ...+.++++.++. ..++.. +++++||.+++.+.
T Consensus 206 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~l~~~gI~~~~~s~g 275 (331)
T 1pff_A 206 NAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---------LEKAKK-VLDNCHVVSLAVSLG 275 (331)
T ss_dssp HHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---------HHHHHH-HHHTCSSSEECSSCC
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC---------HHHHHH-HHHhCCCceeccCCC
Confidence 444444444332 111111 1123345566541 234444 47779997765421
Q ss_pred --------cC---------------CCCCCeEEEEecC-CCcccHHHHHHHHHHH
Q 019899 299 --------CH---------------CIEPGWFRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 299 --------~~---------------~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
|. ...++++|++++. .++++++.+++.|+++
T Consensus 276 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 276 GPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 10 0125799999995 4667777777776643
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-27 Score=210.68 Aligned_cols=275 Identities=16% Similarity=0.156 Sum_probs=189.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh----hhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI----RFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+++.++.+ +.+++++| ++++..++.++.++||+|+++.|+|++....+ + ..|.+++.++. .|
T Consensus 57 l~~~la~~~~~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~-------~d 126 (386)
T 1cs1_A 57 VQRALAELEGGA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAK-RGCYRVLFVDQ-------GD 126 (386)
T ss_dssp HHHHHHHHHTCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHT-TTSCEEEEECT-------TC
T ss_pred HHHHHHHHhCCC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHH-hcCCEEEEeCC-------CC
Confidence 334444444444 55666555 99999999999999999999999999855543 4 67999999885 27
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+.+.. +. .
T Consensus 127 ~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~~----~--- 186 (386)
T 1cs1_A 127 EQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN----PL----A--- 186 (386)
T ss_dssp HHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG----G---
T ss_pred HHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----cc----c---
Confidence 8999999975 7899999999999999998 9999999999999999999998765421 11 1
Q ss_pred cCCCcEEEEecccccCCCCCceE-EEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+.++++.|+||+++.+|.++ ||++++++++.+.+...... ++.++..+.++...++.. ....+.+.+
T Consensus 187 --~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ 257 (386)
T 1cs1_A 187 --LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL-------VPRMELAQR 257 (386)
T ss_dssp --GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH-------HHHHHHHHH
T ss_pred --cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHH-------HHHHHHHHH
Confidence 456788999999998788886 99998556888888765444 345666666655555431 233445566
Q ss_pred HHHHHHHHHHhCC-Cccc------------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 238 LYDSFVAGLKQLG-IRCS------------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 238 ~~~~~~~~l~~~g-~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+.+.+.+.|++++ +... ...++ ++.+.++.. ..++... ++++||.+.+.+
T Consensus 258 ~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~-l~~~gi~~~~~~- 326 (386)
T 1cs1_A 258 NAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGA-MLSFELDGD--------EQTLRRF-LGGLSLFTLAES- 326 (386)
T ss_dssp HHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEESSC--------HHHHHHH-HHTCSSSEEBSC-
T ss_pred HHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCce-EEEEEECCC--------HHHHHHH-HHhCCcceEccc-
Confidence 6677777776642 1110 11244 444566531 2344444 677899886421
Q ss_pred cC----------------C---------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 299 CH----------------C---------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 ~~----------------~---------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
+| . ..++++|++++. ++.++.++++.+++++
T Consensus 327 ~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 327 LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRA 382 (386)
T ss_dssp CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHH
Confidence 11 0 125799999994 4555555555555543
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=221.19 Aligned_cols=289 Identities=13% Similarity=0.079 Sum_probs=186.7
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc------------cccH
Q 019899 16 DPSQIVLTAGATPAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF------------AFSI 81 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~------------~~~~ 81 (334)
+++++++++|+++++..++..+.. ++++|++.+|+|.++........|..+..+..+...+. ..|+
T Consensus 110 ~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 189 (434)
T 3l44_A 110 ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNV 189 (434)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccH
Confidence 578999999999999999987754 77899999999988665544133332222211111110 0188
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc-chhhhhhhcc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF-VSMAEILEAE 159 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~-~~~~~~~~~~ 159 (334)
++|++++++.. .++++|+++.++|++|.+. +.+.+++|.++|++||++||+||+|.+| ..+... .......
T Consensus 190 ~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~--- 262 (434)
T 3l44_A 190 ETLKEALDKWG---HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVT--- 262 (434)
T ss_dssp HHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCC---
T ss_pred HHHHHHHHhCC---CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCC---
Confidence 99999997531 1455455544466777766 7888999999999999999999999987 444322 1121111
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-----hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-----LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
++ +.|+||.++ +|+|+||+++ ++++++.+.. ....++.+++.+.++.++++..+. +...++
T Consensus 263 ---~d----i~t~sK~~~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-----~~~~~~ 328 (434)
T 3l44_A 263 ---PD----LTALGKVIG-GGLPIGAYGG-KKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-----EGLYEK 328 (434)
T ss_dssp ---CS----EEEEEGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-----TTHHHH
T ss_pred ---CC----eeehhhhhc-CCcCeeeEEE-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-----ccHHHH
Confidence 11 457999998 8999999988 8888887765 234567888888887777653211 122333
Q ss_pred HHHHHHHHHHHHHh----CCCcccCCCceeEEeeecCCcCCC-------CChhhHHHHHHHHHHhcCeEEcCCCCcCCCC
Q 019899 235 IKKLYDSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPS-------YSEKGELELWDKLLNIAKINVTPGSACHCIE 303 (334)
Q Consensus 235 ~~~~~~~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~ 303 (334)
++++.+++.+.|++ .++....+..|.++++.+...... .......++...|++ +||.+.|+.
T Consensus 329 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------ 401 (434)
T 3l44_A 329 LDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSK------ 401 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSST------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecC------
Confidence 44444444444443 344322233455666666432110 011233567777555 799999865
Q ss_pred CCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 304 PGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 304 ~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+++|+++. .+++++++++++|++++++.
T Consensus 402 ~~~~rl~~~-~t~e~i~~~l~~l~~~l~~~ 430 (434)
T 3l44_A 402 YEAWFLTTE-HTKEDIEYTIEAVGRAFAAL 430 (434)
T ss_dssp TCCEECCTT-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEecc-cCHHHHHHHHHHHHHHHHHH
Confidence 246888755 79999999999999998753
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=223.91 Aligned_cols=299 Identities=15% Similarity=0.104 Sum_probs=193.0
Q ss_pred hcCCCCCCC-CcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhccCcEE--------------EEEeC
Q 019899 9 LGQAVSFDP-SQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRTGVEL--------------IPVHC 71 (334)
Q Consensus 9 ~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~v--------------~~v~~ 71 (334)
+++.++... +++++++|+++++..++..+ ..++++|++.+|.|++.........+... ..++.
T Consensus 95 la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (439)
T 3dxv_A 95 LLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPY 174 (439)
T ss_dssp HHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSS
T ss_pred HHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCC
Confidence 333344455 79999999999999999885 33667888888888765554431333322 23333
Q ss_pred CCCCCccc-----cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEEEeccccccccC
Q 019899 72 RSTDNFAF-----SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVISDEIYGGSIFG 145 (334)
Q Consensus 72 ~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi~D~~~~~~~~~ 145 (334)
+ +.+.. |+++|++++++ ....++++|+++.++|++|.+.+.+ .+++|.++|++||+++|+||+|+++...
T Consensus 175 ~--~~~~~~~~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~ 250 (439)
T 3dxv_A 175 R--PYRNDPTGDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARS 250 (439)
T ss_dssp S--CBTTBTTSHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTT
T ss_pred C--cccccccHHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 1 21122 78999999851 1113677777777788888877555 4999999999999999999999876554
Q ss_pred CCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHH
Q 019899 146 NEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKF 223 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 223 (334)
+... .. .... . ... +.|+||+++ +|+|+||+++ ++++++.+... ...+ .+++.+.++.++++..+.
T Consensus 251 g~~~-~~-~~~~---~-~~d---i~s~sK~~~-~G~riG~~~~-~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~ 318 (439)
T 3dxv_A 251 GRLH-CF-EHEG---F-VPD---ILVLGKGLG-GGLPLSAVIA-PAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR 318 (439)
T ss_dssp SSSS-GG-GGTT---C-CCS---EEEECGGGG-TTSCCEEEEE-EHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH
T ss_pred chhh-HH-HhcC---C-CCC---EEEEcchhc-CCcceEEEEE-CHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh
Confidence 4321 11 1111 1 122 238999999 6999999998 88888777643 3446 788888887777653221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
....++++++.+++.+.|++ .+.....+..|.++|+++...... ....+..++...|++ +||.+.|+.
T Consensus 319 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~ 392 (439)
T 3dxv_A 319 -----DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQ-LGLVVYYVG 392 (439)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHH-HTEECEEES
T ss_pred -----cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHH-CCcEEeecC
Confidence 22334455555555555544 332222223455666766321110 112345677888665 699999875
Q ss_pred CcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 298 ACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 298 ~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+ ++++|++++. .+++++++++++|++++++.
T Consensus 393 ~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 393 MN----GNVLEFTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp TT----SCEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 32 4789998774 59999999999999998764
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=213.09 Aligned_cols=287 Identities=12% Similarity=0.097 Sum_probs=205.8
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChh--hhhhhccC--cEEEEEeCCCCC------C-ccccH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFD--RDIRFRTG--VELIPVHCRSTD------N-FAFSI 81 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g--~~v~~v~~~~~~------~-~~~~~ 81 (334)
++.+ +.+++++|+|+++++++..+ ++||+|+++++.|+++. ..++ ..| .+++.++.+..+ . ..+|+
T Consensus 48 ~~~~-~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~ 124 (379)
T 3ke3_A 48 YNAE-AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILE-KGKFAKSSTVLTAERTEDTEAPKPFAPVDI 124 (379)
T ss_dssp HTCS-EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHH-HHCCSSEEEEEECEESSCCSSCCCEECCCH
T ss_pred hCCC-CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHH-HhCCCCceEEEeccccccccccCCCCCCCH
Confidence 3344 68999999999999988654 69999999999887653 2233 344 478888763211 1 25899
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+++++++++. ++++|++++++||+|.+.|.+++++|.++|+++|+++|+|++++ . + ....+..
T Consensus 125 ~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g---~-~~~~~~~------- 187 (379)
T 3ke3_A 125 ETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G---C-VWLDMKE------- 187 (379)
T ss_dssp HHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---T-CCCCHHH-------
T ss_pred HHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---C-ccccccc-------
Confidence 9999999753 78899999999999999999999999999999999999999975 2 1 1222221
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh----------------------c--ccCCChHHHHHHHHh
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT----------------------R--FCSISAPTQRLLISM 217 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~~ 217 (334)
.+.++++.|++|+++ .+.++|++++ ++++.+.+.... . .++.+...+.++..+
T Consensus 188 -~~~d~~~~s~~K~l~-~~~g~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aa 264 (379)
T 3ke3_A 188 -LGIDVLISAPQKGWS-STPCAGLVML-SAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDA 264 (379)
T ss_dssp -HTCSEEEECTTTTTC-SCCCEEEEEE-CHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHH
T ss_pred -cCCCEEEecchhhcC-CCCceEEEEE-CHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHH
Confidence 355678899999996 3345899998 888877775411 0 124566666666666
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 218 LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
++..+ +..+++..++++++++++.+.|+++|+++..+. .+....+..+.. ....... ++++||.+.
T Consensus 265 l~~~~--~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~-L~~~Gi~v~ 333 (379)
T 3ke3_A 265 ILEAK--EIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERD--------DMHKGSA-FAEAGLQIA 333 (379)
T ss_dssp HHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCH--------HHHSSHH-HHHTTCCCE
T ss_pred HHHHH--HhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCc--------chHHHHH-HHHCCeEEe
Confidence 54321 222567788889999999999999998876543 232333333221 1122444 566899999
Q ss_pred CCCCcCC---CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 295 PGSACHC---IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 295 ~g~~~~~---~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+|..+.. ...+.+|++++. .+++|+++++++|++++++.
T Consensus 334 ~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 334 AGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp ECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 9886542 235789999875 59999999999999998764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=211.54 Aligned_cols=182 Identities=16% Similarity=0.204 Sum_probs=140.8
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh----hhhccCcEEEEEeCCCCCCccccH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD----IRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++.+++.++.+ +.+++++ +++++..++. ++++||+|+++.|+|++.... ++ ..|.+++.++.. |+
T Consensus 73 ~~~la~~~g~~-~~i~~~s-G~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~-~~G~~v~~v~~~-------d~ 141 (403)
T 3cog_A 73 EKAVAALDGAK-YCLAFAS-GLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVAS-EFGLKISFVDCS-------KI 141 (403)
T ss_dssp HHHHHHHHTCS-EEEEESC-HHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGG-GGTCEEEEECTT-------SH
T ss_pred HHHHHHHhCCC-cEEEECC-HHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHH-HcCCEEEEECCC-------CH
Confidence 33444334333 4555555 5689999998 889999999999999985553 34 679999999862 78
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC-cEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN-IHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~-~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++++++ ++++|++++|+||||.+++ +++|.++|+++| +++|+|++|..+.+. .++
T Consensus 142 ~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~----~~~-------- 200 (403)
T 3cog_A 142 KLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ----RPL-------- 200 (403)
T ss_dssp HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC----CTT--------
T ss_pred HHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC----Ccc--------
Confidence 999998875 7999999999999999999 999999999999 999999999875532 111
Q ss_pred cCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCC
Q 019899 161 VDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSD 220 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 220 (334)
+.+.++++.|+||.++.+| +++||++++++++.+.++.....+ ..++..+.++...++.
T Consensus 201 -~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 201 -ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp -TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred -ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 1456789999999998665 579999986788888887655443 3577777777766665
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=223.35 Aligned_cols=278 Identities=13% Similarity=0.094 Sum_probs=198.4
Q ss_pred hhhhhhhcCCCCCC-CCcEEEecCc-HHHHHHHHHHhcCC---CCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 3 GFMSQVLGQAVSFD-PSQIVLTAGA-TPAVEILCFCLADH---GNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~i~~~~g~-~~~~~~~~~~l~~~---gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
+++.+.++ ++ +++|++++|+ ++++..++.++..+ ||.|+++.++|... ..++ ..| +++.++++++++
T Consensus 55 ~~la~~~g----~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~-~~g-~~~~v~~~~~~~- 126 (360)
T 1w23_A 55 NLLRELLQ----IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAK-LLG-ETHIAASTKANS- 126 (360)
T ss_dssp HHHHHHHT----CCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHH-TTS-EEEEEEECGGGT-
T ss_pred HHHHHHhC----CCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHH-HhC-CeEEeecccccC-
Confidence 34444444 43 5699999999 99999999998764 66788877777653 3355 679 999999853233
Q ss_pred cccHHHHHH-HHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 78 AFSITALDQ-AFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~-~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
.+|++++++ ++++ ++++|++++|+||||.+++ ++. +++|++||+|++|+.+.. ..++.
T Consensus 127 ~~d~~~l~~~~i~~------~~k~v~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~~----~~~~~--- 185 (360)
T 1w23_A 127 YQSIPDFSEFQLNE------NDAYLHITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILSR----PLKVN--- 185 (360)
T ss_dssp SCSCCCGGGCCCCT------TEEEEEEESEETTTTEECS--SCC------CCCSSCEEEECTTTTTSS----CCCGG---
T ss_pred cCCccchHhhccCC------CCCEEEEeCCCCCcceecc--ccc------ccCCceEEEechhhcCCC----CcCcc---
Confidence 478899988 7754 7999999999999999987 332 379999999999986432 11221
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-------------c-ccCCChHHHHHHHHhhCChH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-------------R-FCSISAPTQRLLISMLSDTK 222 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~l~~~~ 222 (334)
. . ++++.|+||.+|++| +||+++ ++++++.+.... . ..+.+...+.++..+++...
T Consensus 186 ~-----~--di~~~s~sK~~~~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 255 (360)
T 1w23_A 186 Q-----F--GMIYAGAQKNLGPSG--VTVVIV-KKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIK 255 (360)
T ss_dssp G-----C--SEEEEETTTTTSCTT--CEEEEE-EHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH
T ss_pred c-----C--CEEEEEcccccCCCC--cEEEEE-cHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 2 378899999998666 899998 666665553321 1 12345555555555553211
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhCC-C-ccc-CC--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 223 FIQE-YLETNKRRIKKLYDSFVAGLKQLG-I-RCS-ES--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 223 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~g-~-~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
+. .+.+++++++++++++.+.|++++ + ... .+ .+++++|++++.. .+..++.+. ++++||.+.||
T Consensus 256 --~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-l~~~gi~~~~~ 326 (360)
T 1w23_A 256 --DLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------ELNQQFLAK-AKEQGFVGLNG 326 (360)
T ss_dssp --HTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH------HHHHHHHHH-HHHTTEESCBC
T ss_pred --HhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCC------ccHHHHHHH-HHHCCeeeecC
Confidence 12 457788889999999999998875 4 432 12 2466888888642 234567777 55689999888
Q ss_pred CCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 297 SACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
..+ ++++|++++. .+++++++++++|++++++
T Consensus 327 ~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 327 HRS----VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCC----CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 753 5789999985 5899999999999998865
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=218.52 Aligned_cols=277 Identities=13% Similarity=0.075 Sum_probs=189.9
Q ss_pred EEEecCcHHHHHHHHHHhcCCCCe--EEecCCCCCChhhh--h-hhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 20 IVLTAGATPAVEILCFCLADHGNA--LLVPSPYYPGFDRD--I-RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 20 i~~~~g~~~~~~~~~~~l~~~gd~--vl~~~p~~~~~~~~--~-~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
.++++|+++++..++.++..+||+ |+++.+.|...... . . ..|.+++.++. +++.+|+++++++ .
T Consensus 66 ~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~-~~g~~~~~v~~---~~~~~d~~~l~~~-~----- 135 (359)
T 3pj0_A 66 AVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKE-LQQITPLLLGT---ANQLLTIDDIKSL-R----- 135 (359)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHH-HHCCEEEECSC---TTSCCCHHHHHTC-S-----
T ss_pred EEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHH-hcCceEEecCC---cCCCcCHHHHHhc-c-----
Confidence 356688889999999999888886 55555555443322 2 3 56899998885 4468999999987 3
Q ss_pred CCceeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 95 GVKVRGILICNPANPV-GNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 95 ~~~~~~i~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
.++++|++++|+||+ |.+++.+++++|.++|++||++||+|++|..+.... ...+...+. .+.++++.|+|
T Consensus 136 -~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~------~~~d~~~~s~s 207 (359)
T 3pj0_A 136 -EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPF-YQKSAEEIC------ALFDSVYVSFY 207 (359)
T ss_dssp -SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHH-HTCCHHHHH------TTCSEEEEESS
T ss_pred -CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhh-hCCCHHHhh------ccCCEEEEecc
Confidence 379999999999987 799999999999999999999999999986533110 001222222 22334566999
Q ss_pred ccCCCCCceEEEEeecCHHHHHHHHHhhcccC--C--ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS--I--SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
|+++.+ .+ |+++. ++++++.++.....++ . ......+....+ ++.. +..+++.++++++.+.|+++
T Consensus 208 K~~~~~-~g-g~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l------~~~~-~~~~~~~~~~~~l~~~L~~~ 277 (359)
T 3pj0_A 208 KGIGGI-AG-AILAG-NDDFVQEAKIWKRRYGGDLISLYPYILSADYYF------EKRI-GKMAEYFEAAKGLAERFNSC 277 (359)
T ss_dssp STTCCS-SC-EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH------HHHG-GGHHHHHHHHHHHHHHHHTS
T ss_pred ccCCCc-ce-EEEEC-CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH------HHHH-HHhHHHHHHHHHHHHHHhhC
Confidence 998744 33 77777 8999988876443221 2 222222222222 2222 23345677888999999987
Q ss_pred -CCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC----CCcccHHHHH
Q 019899 250 -GIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS----LTHEDIPLVI 323 (334)
Q Consensus 250 -g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~----~~~~~l~~~l 323 (334)
|+++. .+..+.++|++++... ..+..++.+. +.++||.+.||..|+....+++|++++. .+.+++++++
T Consensus 278 ~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~-l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l 352 (359)
T 3pj0_A 278 SGVKTVPEVPVSNMFHVYFENSA----DEIGAILTKI-QDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVF 352 (359)
T ss_dssp TTEEEESSSCSSSEEEEEESSCH----HHHHHHHHHH-HHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHH
T ss_pred CCceeeccCCcceEEEEEecCcc----chhHHHHHHH-HHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHH
Confidence 88874 5666777888876431 1133456666 5668999999988775455789998862 4678888888
Q ss_pred HHHHHH
Q 019899 324 ERIQKV 329 (334)
Q Consensus 324 ~~l~~~ 329 (334)
++|.+.
T Consensus 353 ~~l~~~ 358 (359)
T 3pj0_A 353 RCLEKE 358 (359)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=217.99 Aligned_cols=275 Identities=15% Similarity=0.126 Sum_probs=198.4
Q ss_pred CCcEEEecCcHHHHHHHHHHhc---------CCC-CeEEecCCCCCChhh-hhhhccC------------cEEEEEeCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA---------DHG-NALLVPSPYYPGFDR-DIRFRTG------------VELIPVHCRS 73 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~---------~~g-d~vl~~~p~~~~~~~-~~~~~~g------------~~v~~v~~~~ 73 (334)
.+++++++|+++|+..++..+. .+| |+|++.+|+|++... .+. ..| .+++.+|.
T Consensus 133 ~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~-~~g~~~~~~~~~p~~~~v~~~~~-- 209 (439)
T 2oat_A 133 YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAIS-SSTDPTSYDGFGPFMPGFDIIPY-- 209 (439)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHT-TCCCHHHHTTSCSCCTTEEEECS--
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhh-cCCChhcccCCCCCCCCeEEeCC--
Confidence 5799999999999999998864 356 899999999987644 344 444 45666663
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc-h
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-S 151 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~-~ 151 (334)
.|++++++++++ .++++|++...++++|. ..+.+++++|.++|++||+++|+||+|.++.+.+..+. .
T Consensus 210 -----~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~ 279 (439)
T 2oat_A 210 -----NDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 279 (439)
T ss_dssp -----SCHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGG
T ss_pred -----CCHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHH
Confidence 278999998852 26775555443678997 46888999999999999999999999987655443221 1
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
.... ..+ + .|+||.++ +| +|+||+++ ++++.+.+.. ....++.|++.+.++.+.++..+ +
T Consensus 280 ~~~~-------~~D-i--~t~sK~l~-~G~~~~G~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~-- 342 (439)
T 2oat_A 280 YENV-------RPD-I--VLLGKALS-GGLYPVSAVLC-DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLE---E-- 342 (439)
T ss_dssp GGTC-------CCS-E--EEECGGGG-TTSSCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--
T ss_pred HhCC-------CCc-E--EEeccccc-CCCCCeEEEEE-CHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHh---h--
Confidence 1111 112 2 28999998 68 89999999 7788777654 23456778888887777765322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCe
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLGIRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~ 306 (334)
....++++++.+++.+.|++++++.. .+..|.++|++++.... .+..++...|++ +||.+.|+. +++
T Consensus 343 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~----~~~~~l~~~l~~-~Gv~v~~~~------~~~ 411 (439)
T 2oat_A 343 ENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD----WDAWKVCLRLRD-NGLLAKPTH------GDI 411 (439)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSS----CCHHHHHHHHHH-TTEECCBSS------SSE
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCcc----HHHHHHHHHHHH-CCeEEecCC------CCE
Confidence 24567788888999999988765432 22345677888875310 134578888665 799998842 578
Q ss_pred EEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 307 FRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 307 iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+|++++. .+++++++++++|++++++
T Consensus 412 iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 412 IRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 9998874 6999999999999999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=217.97 Aligned_cols=276 Identities=11% Similarity=0.026 Sum_probs=190.6
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCC--eEEecCCCCCChhh---hhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGN--ALLVPSPYYPGFDR---DIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd--~vl~~~p~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
+..++++++++++..++.++.++|| .|+++.+.|..... ... ..|.+++.++. +++.+|+++++++ .
T Consensus 63 ~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~-~~g~~~~~v~~---~~~~~d~~~l~~~--~-- 134 (357)
T 3lws_A 63 DDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKE-LHPIETILVGA---ADRLMTLDEIKAL--P-- 134 (357)
T ss_dssp SEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHH-HSSCEEEECSC---TTSCCCHHHHHTC--C--
T ss_pred CcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhh-ccCcEEEEecC---CCCCcCHHHHhcC--c--
Confidence 3445668888899999999988888 67777776655444 233 56888888874 4457999999876 1
Q ss_pred HcCCceeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCcEEEEecccccc--ccCCCCcchhhhhhhccccCCCcEEEE
Q 019899 93 KRGVKVRGILICNPANPV-GNIIPRETLYELLDFAREKNIHVISDEIYGGS--IFGNEEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
+++++++++|+||| |.+++.+++++|+++|++||++||+|++|... .+.+. +...+.. ...+++
T Consensus 135 ----~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~------~~d~~~ 201 (357)
T 3lws_A 135 ----DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEK---TAAEIAG------LFDSIY 201 (357)
T ss_dssp ----SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC---CHHHHHT------TSSEEE
T ss_pred ----CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCC---ChHHHHh------cCCEEE
Confidence 47899999999998 99999999999999999999999999998621 11122 2222221 122347
Q ss_pred ecccccCCCCCceEEEEeecCHHHHHHHHHhhcccC--C--ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 170 YGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS--I--SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245 (334)
Q Consensus 170 ~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (334)
.|+||+++.++. ||+++ ++++++.+......++ . +...+.++...+ +++.+++ +++.++++++.+.
T Consensus 202 ~s~sK~~~~~~g--g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~-~~~~~~~~~l~~~ 271 (357)
T 3lws_A 202 ISFYKGLGGIAG--AILAG-PAAFCQTARIWKRRYGGDLISLYPYIVSADYYY------ELRKDRM-GQYYEQAKQLAEQ 271 (357)
T ss_dssp EESSSTTCCSSC--EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH------HHHTTCH-HHHHHHHHHHHHH
T ss_pred EeccccCCCCce--EEEEc-CHHHHHHHHHHHHHhcCCcccchHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHH
Confidence 899999942332 99988 8899888876543322 1 222222222222 2222222 3356778889999
Q ss_pred HHhC-CCcc-cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC----CCcccH
Q 019899 246 LKQL-GIRC-SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS----LTHEDI 319 (334)
Q Consensus 246 l~~~-g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~----~~~~~l 319 (334)
|+++ |+++ ..+..++++|++++... ..+..++... +.++||.+.||..++ ....++|++++. .+++++
T Consensus 272 L~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-l~~~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l 345 (357)
T 3lws_A 272 FNALPGVHTTPEVPVSNMFHLHFDGQA----ADISPKLEQV-QEETGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTR 345 (357)
T ss_dssp HHTSTTEEEESSSCSSSEEEEEEESCH----HHHHHHHHHH-HHHHCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHH
T ss_pred HHhCCCCeeccCCCcceEEEEEecCCh----HHHHHHHHHH-HHhcCeEEecccccC-CCceEEEEEecchhhhcCHHHH
Confidence 9987 8887 45677888999987531 0123466666 566899999997665 234589999862 367888
Q ss_pred HHHHHHHHHHH
Q 019899 320 PLVIERIQKVA 330 (334)
Q Consensus 320 ~~~l~~l~~~~ 330 (334)
++++++|.+++
T Consensus 346 ~~al~~l~~al 356 (357)
T 3lws_A 346 DAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999888764
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-28 Score=220.86 Aligned_cols=303 Identities=10% Similarity=0.074 Sum_probs=195.4
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhhhhhhccC----------
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDRDIRFRTG---------- 63 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~~g---------- 63 (334)
++++.+. ++.+.++|++++|+++++..++..+.+ ++++|++.+|+|+++........+
T Consensus 100 a~~l~~~----~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 175 (459)
T 4a6r_A 100 SSLLAEV----TPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDL 175 (459)
T ss_dssp HHHHHHH----SCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CC
T ss_pred HHHHHHh----CCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCC
Confidence 3445443 445678999999999999999998865 578999999999976644331111
Q ss_pred --cEEEEEeCCC--C-CCcccc--------HHHHHHHHHHHHHcCCceeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHh
Q 019899 64 --VELIPVHCRS--T-DNFAFS--------ITALDQAFNQARKRGVKVRGILICNP-ANPVGN-IIPRETLYELLDFARE 128 (334)
Q Consensus 64 --~~v~~v~~~~--~-~~~~~~--------~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~-~~~~~~l~~i~~~~~~ 128 (334)
..+..++.+. . +.+ .| +++|++++++.. ..+++ +++++| ++++|. ..+.+++++|.++|++
T Consensus 176 ~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~--~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 251 (459)
T 4a6r_A 176 PIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIG--ADKVA-AFVGEPIQGAGGVIVPPATYWPEIERICRK 251 (459)
T ss_dssp SCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred CCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcC--CCCEE-EEEECCccCCCCcccCCHHHHHHHHHHHHH
Confidence 1334444321 0 111 33 788888887421 01455 555555 566666 4488899999999999
Q ss_pred cCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH-----Hhhcc
Q 019899 129 KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK-----KLTRF 203 (334)
Q Consensus 129 ~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~-----~~~~~ 203 (334)
||+++|+||+|.++.+.|..+ ..... + . ... +.++||+++..|+|+|++++ ++++.+.+. .....
T Consensus 252 ~~~llI~DEv~~g~gr~G~~~-~~~~~-~---~-~pd---i~t~sK~l~gg~~~lg~v~~-~~~i~~~~~~~~~~~~~~t 321 (459)
T 4a6r_A 252 YDVLLVADEVICGFGRTGEWF-GHQHF-G---F-QPD---LFTAAKGLSSGYLPIGAVFV-GKRVAEGLIAGGDFNHGFT 321 (459)
T ss_dssp TTCEEEEECTTTTTTTTSSSS-HHHHH-T---C-CCS---EEEECGGGGTTSSCCEEEEE-CHHHHHHHHHHCTTHHHHH
T ss_pred cCCEEEEeccccCCCcccccc-hHhhc-C---C-CCC---eeehhhhhcCCCCCccceee-CHHHHHHhhcCCCcccCCC
Confidence 999999999999876655422 11111 1 1 122 33689999744489999998 899999887 23456
Q ss_pred cCCChHHHHHHHHhhCChHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC-CcccCCCceeEEeeecCCcCCCC-----Chh
Q 019899 204 CSISAPTQRLLISMLSDTKFIQEYLETNK-RRIKKLYDSFVAGLKQLG-IRCSESSAGLYCWADMSGLIPSY-----SEK 276 (334)
Q Consensus 204 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g-~~~~~~~~g~~~~~~~~~~~~~~-----~~~ 276 (334)
++.|++++.++.++++..+. ++..++.+ +.....++.+.+.|.+++ +....+. |.++++++....... ...
T Consensus 322 ~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 399 (459)
T 4a6r_A 322 YSGHPVCAAVAHANVAALRD-EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGV-GMVQAFTLVKNKAKRELFPDFGE 399 (459)
T ss_dssp HCSCHHHHHHHHHHHHHHHH-TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEE-TTEEEEEECSBTTTTBCCSSTTH
T ss_pred CCCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEEEEEEEecCccccccccchHH
Confidence 78899999988888764321 12223333 333333333334444432 2233333 455667765432110 111
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 277 GELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 277 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
...++...+++ +||.+.|+. +++|++++. .+++++++++++|++++++
T Consensus 400 ~~~~~~~~l~~-~Gv~v~~~g-------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 400 IGTLCRDIFFR-NNLIMRACG-------DHIVSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp HHHHHHHHHHH-TTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCeEEecCC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 24567777555 799998852 689999764 6999999999999999875
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=217.89 Aligned_cols=276 Identities=16% Similarity=0.172 Sum_probs=188.6
Q ss_pred CCcEEEecCcHHHHHHHHHHhc---------CCC-CeEEecCCCCCChhhh-hhhccC------------cEEEEEeCCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLA---------DHG-NALLVPSPYYPGFDRD-IRFRTG------------VELIPVHCRS 73 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~---------~~g-d~vl~~~p~~~~~~~~-~~~~~g------------~~v~~v~~~~ 73 (334)
.+++++++|+++|+..++..+. .+| |+|++++|+|.+.... +. ..| .+++.+|.
T Consensus 122 ~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~-~~g~~~~~~~~~p~~~~v~~~~~-- 198 (433)
T 1z7d_A 122 YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCIS-ASTTKKCTSNFGPFAPQFSKVPY-- 198 (433)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECT--
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhc-ccCCccccccCCCCCCCeEEeCC--
Confidence 5799999999999999988753 356 9999999999876443 33 333 23445543
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
.|++++++++++ .++++|++...+|++|.+ .+.+++++|.++|++||+++|+||+|.++.+.+..+. .
T Consensus 199 -----~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~-~ 267 (433)
T 1z7d_A 199 -----DDLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC-V 267 (433)
T ss_dssp -----TCHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG-G
T ss_pred -----CCHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchh-h
Confidence 379999999852 267765555446789985 6888999999999999999999999987655443221 1
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
+..+ . ... +.|+||.++ +| +|+||+++ ++++.+.+.. ....++.|++.+.++.+.++..+ + .
T Consensus 268 -~~~~---~-~~d---i~t~sK~l~-~G~~~~G~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~ 332 (433)
T 1z7d_A 268 -HHYN---V-KPD---VILLGKALS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI---N--E 332 (433)
T ss_dssp -GGGT---C-CCS---EEEECGGGG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH---H--T
T ss_pred -HhcC---C-CCC---EEEECcccc-CCCCCeEEEEE-CHHHHhhhccccccccCCCCHHHHHHHHHHHHHHH---h--c
Confidence 1111 1 112 238999998 89 99999999 7788776654 23446778888887777765322 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHhC--CCccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQL--GIRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~--g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~ 305 (334)
...++++++.+++.+.|++. ++... .+..|.++|++++... .+..++...|++ +||.+.|+. ++
T Consensus 333 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-----~~~~~~~~~l~~-~Gv~v~~~~------~~ 400 (433)
T 1z7d_A 333 KLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-----VNVLDICLKLKE-NGLITRDVH------DK 400 (433)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-----CCHHHHHHHHHH-TTEECCEET------TT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-----hHHHHHHHHHHH-CCeEEecCC------CC
Confidence 34566777778888888765 44322 1234567788887531 134578888665 799998852 57
Q ss_pred eEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 306 WFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 306 ~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++|++++. .+++++++++++|++++++.
T Consensus 401 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 401 TIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 89998874 69999999999999998753
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=221.19 Aligned_cols=293 Identities=14% Similarity=0.072 Sum_probs=202.2
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC-------CC-CeEEecCCCCCChhhhhhhcc--------------C
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD-------HG-NALLVPSPYYPGFDRDIRFRT--------------G 63 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~-------~g-d~vl~~~p~~~~~~~~~~~~~--------------g 63 (334)
++.+.+.++.+.++|++++|+++|+..++..+.. +| ++|++.+++|.++..... .. .
T Consensus 124 ~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~ 202 (457)
T 3tfu_A 124 AKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAM-SICDPHGGMHSLWTDVL 202 (457)
T ss_dssp HHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHH-TTSCCC----------C
T ss_pred HHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhh-cccCCcccccccccCCC
Confidence 3334333455678999999999999999988753 44 589999999987654333 22 1
Q ss_pred cEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeC-CCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccc
Q 019899 64 VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICN-PANPVGNII-PRETLYELLDFAREKNIHVISDEIYGG 141 (334)
Q Consensus 64 ~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~ 141 (334)
..+..++.+.......|+++|++++++. ..++++|++.. ++||+|.+. +.+.+++|.++|++||+++|+||+|.+
T Consensus 203 ~~~~~~~~p~~~~~~~d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g 279 (457)
T 3tfu_A 203 AAQVFAPQVPRDYDPAYSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATG 279 (457)
T ss_dssp CCCEEECCCCSSCCHHHHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred CCceEecCCCcccCHHHHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccC
Confidence 1233444332222335899999999853 12678777777 689999877 677799999999999999999999998
Q ss_pred cccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH-------hhcccCCChHHHHH
Q 019899 142 SIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK-------LTRFCSISAPTQRL 213 (334)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 213 (334)
|.+.|..+ ...... . ..+ +.|+||.++ .| +|+||+++ ++++.+.+.. ....++.|++.+.+
T Consensus 280 ~gr~G~~~-a~~~~~----~-~pd---iit~sK~l~-gG~~~lG~v~~-~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aa 348 (457)
T 3tfu_A 280 FGRTGALF-AADHAG----V-SPD---IMCVGKALT-GGYLSLAATLC-TADVAHTISAGAAGALMHGPTFMANPLACAV 348 (457)
T ss_dssp TTTTSSSS-THHHHT----C-CCS---EEEECGGGG-TTSSCCEEEEE-EHHHHHHHHHSSSCSCCCCCTTTTCHHHHHH
T ss_pred Cccccchh-HhHhcC----C-Cce---EEEEChhhh-CCCcceEEEEE-cHHHHHHhhccCCCceeEecCCCcCHHHHHH
Confidence 76655432 111111 1 222 228999997 56 69999998 8899888862 22446788888888
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhc
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIA 289 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (334)
+.+.++..+ + +...++++++.+++.+.|+++. +....+ .|.+++++++... +..++...|++ +
T Consensus 349 a~aaL~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~-~G~~~~i~l~~~~------~~~~~~~~l~~-~ 415 (457)
T 3tfu_A 349 SVASVELLL---G--QDWRTRITELAAGLTAGLDTARALPAVTDVRV-CGAIGVIECDRPV------DLAVATPAALD-R 415 (457)
T ss_dssp HHHHHHHHH---T--SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEE-CSSCEEEEESSCC------CHHHHHHHHHH-T
T ss_pred HHHHHHHHh---h--hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeec-CCeEEEEEECCcc------cHHHHHHHHHH-C
Confidence 777765321 1 2344556666777777776642 222223 3556778887542 24678888665 6
Q ss_pred CeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 290 KINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 290 gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
||.+.|. .+++|++++. .+++++++++++|++++++.
T Consensus 416 Gv~v~~~-------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 416 GVWLRPF-------RNLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp TEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999873 2589998764 59999999999999999764
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=215.29 Aligned_cols=301 Identities=12% Similarity=0.102 Sum_probs=204.3
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhh-hhhhccCc----------
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDR-DIRFRTGV---------- 64 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~-~~~~~~g~---------- 64 (334)
-+++.+++.++.++++|++++|+++++..++..+.. ++|+|++.+|+|+++.. .+. ..|.
T Consensus 97 ~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~-~~g~~~~~~~~~~~ 175 (449)
T 3a8u_X 97 QLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTS-LGGVNGNRKLFGQP 175 (449)
T ss_dssp HHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHH-HCCCHHHHTTTCCC
T ss_pred HHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhh-ccCChhhccccCCC
Confidence 345556666667788999999999999999988753 67999999999987654 333 3331
Q ss_pred --EEEEEeCCC--CCC-cccc--------HHHHHHHHHHHHHcCCceeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhc
Q 019899 65 --ELIPVHCRS--TDN-FAFS--------ITALDQAFNQARKRGVKVRGILICNP-ANPVGN-IIPRETLYELLDFAREK 129 (334)
Q Consensus 65 --~v~~v~~~~--~~~-~~~~--------~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~-~~~~~~l~~i~~~~~~~ 129 (334)
.+..++++. ... ..+| +++|++++++.. ..++++ ++++| +|+||. ..+.+++++|.++|++|
T Consensus 176 ~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~ 252 (449)
T 3a8u_X 176 MQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAA-VFVEPLAGSAGVLVPPEGYLKRNREICNQH 252 (449)
T ss_dssp SCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEE-EEEcCccCCCCCccCCHHHHHHHHHHHHHh
Confidence 234444321 111 1245 899999987521 015664 45556 578997 55688999999999999
Q ss_pred CcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh--------
Q 019899 130 NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL-------- 200 (334)
Q Consensus 130 ~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~-------- 200 (334)
|+++|+||+|.++.+.+..+ .+... . . ..+ +.|+||.++ +| +|+||+++ ++++.+.+...
T Consensus 253 ~~~li~Dev~~~~g~~g~~~-~~~~~-~---~-~~d---i~s~sK~l~-~G~~~~G~~~~-~~~~~~~l~~~~~~~~~~~ 321 (449)
T 3a8u_X 253 NILLVFDEVITGFGRTGSMF-GADSF-G---V-TPD---LMCIAKQVT-NGAIPMGAVIA-STEIYQTFMNQPTPEYAVE 321 (449)
T ss_dssp TCEEEEECTTTTTTTTSSSS-HHHHH-T---C-CCS---EEEECGGGG-TTSSCCEEEEE-EHHHHHHHHTCSSCTTSCS
T ss_pred CCEEEEeccccCccccCcch-hhhhc-C---C-CCC---EEEEccccc-CCCCceEEEEE-CHHHHHHhhccCccccccc
Confidence 99999999998765444321 11111 1 1 122 228899998 68 99999998 67888888753
Q ss_pred ---hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cccc--CCCceeEEeeecCCcCCCCC
Q 019899 201 ---TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IRCS--ESSAGLYCWADMSGLIPSYS 274 (334)
Q Consensus 201 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~--~~~~g~~~~~~~~~~~~~~~ 274 (334)
...++.+++.+.++.++++..+ + ....++++++.+++.+.|++++ +... .+..|.++|++++......
T Consensus 322 ~~~~~t~~~~~~~~aa~~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~- 395 (449)
T 3a8u_X 322 FPHGYTYSAHPVACAAGLAALCLLQ---K--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA- 395 (449)
T ss_dssp SCCCCTTTTCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBS-
T ss_pred ccccCCCcccHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccc-
Confidence 1235567888877777765322 1 2355667777888888887642 3322 1234677889987542210
Q ss_pred hhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 275 EKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 275 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+..++...|++ +||.+.|+. +++|++++. .+++++++++++|++++++.
T Consensus 396 ~~~~~~~~~~l~~-~Gv~v~~~g-------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 396 IVRPFEAGMALWK-AGFYVRFGG-------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp SHHHHHHHHHHHH-HTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHH-CCcEEecCC-------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 0022367788665 799999851 689999763 69999999999999998764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=212.94 Aligned_cols=278 Identities=11% Similarity=0.073 Sum_probs=188.5
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+++.++.+ +.+++++++++++.++. ++++||+|+++.|+|++... .++ ..|.+++.++++ |
T Consensus 60 lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~-~~G~~v~~v~~~-------d 128 (393)
T 1n8p_A 60 LERAVAALENAQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVAN-AHGVETSFTNDL-------L 128 (393)
T ss_dssp HHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTST-TTCSCCEEESSH-------H
T ss_pred HHHHHHHHhCCC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHH-HcCcEEEEeCCC-------h
Confidence 445555545443 56666667999999999 88999999999999986554 345 679999999852 6
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc----CcEEEEeccccccccCCCCcchhhhhh
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK----NIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~----~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
+++++++++ ++++|++++|+||||.++| +++|.++|+++ |+++|+|++|+.+.+. .. .
T Consensus 129 -~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~---~ 190 (393)
T 1n8p_A 129 -NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NP---L 190 (393)
T ss_dssp -HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CG---G
T ss_pred -HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CH---H
Confidence 788888864 7999999999999999999 99999999999 9999999999876542 11 1
Q ss_pred hccccCCCcEEEEecccccCCCCCceE-EEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRT-GVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~-g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
. .+.++++.|+||.+|.+|+|+ ||++++++++.+.+......+ +.++....++...++.. ....+
T Consensus 191 ~-----~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~-------~~~~~ 258 (393)
T 1n8p_A 191 N-----FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTL-------HLRVR 258 (393)
T ss_dssp G-----GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH-------HHHHH
T ss_pred H-----cCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchH-------HHHHH
Confidence 1 356789999999999889999 999985588888887654432 34555555444444432 23334
Q ss_pred HHHHHHHHHHHHHHhCC--Cc-ccCC---------------C--c-eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE
Q 019899 234 RIKKLYDSFVAGLKQLG--IR-CSES---------------S--A-GLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~g--~~-~~~~---------------~--~-g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
+..++++.+.+.|++.+ +. +..| . . +.++++.+++. ..+...+... ++..++.
T Consensus 259 ~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-----~~~~~~~l~~-l~~~~~~ 332 (393)
T 1n8p_A 259 QAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-----AEAASKFASS-TRLFTLA 332 (393)
T ss_dssp HHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-----HHHHHHHHHH-CSSSEEC
T ss_pred HHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-----HHHHHHHHhh-CCcceEC
Confidence 45556666777776653 21 1011 1 2 45677888642 1233344444 4444555
Q ss_pred EcCCCCcCC---------------------CCCCeEEEEecC-CCcccHHHHHHHHHHH
Q 019899 293 VTPGSACHC---------------------IEPGWFRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 293 v~~g~~~~~---------------------~~~~~iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
+..|+.+.. ..++.+|+|++. .++++++.+.+.|+++
T Consensus 333 ~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 333 ESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp SCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 544432210 114689999995 3566666666666654
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=219.15 Aligned_cols=296 Identities=14% Similarity=0.070 Sum_probs=187.6
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhcc-------------CcEEEEEeCCC--CCCccc
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRT-------------GVELIPVHCRS--TDNFAF 79 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~-------------g~~v~~v~~~~--~~~~~~ 79 (334)
.++|++++|+++|+..++..+. .++++|++.+++|+++........ ...+..++.+. .+.+..
T Consensus 125 ~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (453)
T 4ffc_A 125 DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGL 204 (453)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTC
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcccc
Confidence 5799999999999999997664 356899999999986654432111 12455555431 122222
Q ss_pred c-HHHHHHHHHHHHHc-CCceeEEEEeCCCCCcc--cCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhh
Q 019899 80 S-ITALDQAFNQARKR-GVKVRGILICNPANPVG--NIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 80 ~-~~~l~~~l~~~~~~-~~~~~~i~~~~p~nptG--~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
+ .+.++..++..... ..+..+++++.|.|++| ...+.+.+++|.++|++||+++|+||+|.++.+.+... .....
T Consensus 205 ~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~-a~~~~ 283 (453)
T 4ffc_A 205 TGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF-ASEHE 283 (453)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccc-hhhhc
Confidence 2 23333222221111 11345577778866665 34477789999999999999999999999876555322 11111
Q ss_pred hhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 156 LEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
+....+.++||+++ .|+|+||+++ ++++++.+... ...++.|++.+.++.++++..+. + ...+
T Consensus 284 --------~~~pdi~t~sK~~~-~G~~~G~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~----~~~~ 348 (453)
T 4ffc_A 284 --------GIVPDIVTMAKGIA-GGMPLSAVTG-RAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-L----DLPA 348 (453)
T ss_dssp --------TCCCSEEEECGGGG-TTSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-T----THHH
T ss_pred --------CCCcchHhhhhhhc-CCcCeEEEEE-CHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-h----hHHH
Confidence 11222457899998 5999999998 88888877643 34567899999888888754221 1 2233
Q ss_pred HHHHHHHHHHHHHH----hCCCcccCCCceeEEeeecCCcCC-CCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEE
Q 019899 234 RIKKLYDSFVAGLK----QLGIRCSESSAGLYCWADMSGLIP-SYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFR 308 (334)
Q Consensus 234 ~~~~~~~~~~~~l~----~~g~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iR 308 (334)
+++++.+++.+.|+ +++.....+..|.++|+++..... ........++...+++ +||.+.|+..+ .+++|
T Consensus 349 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iR 423 (453)
T 4ffc_A 349 RARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF----GNVIR 423 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT----SCEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEE
Confidence 33344444444443 333222222335677777743111 1122345567777554 89999987644 46899
Q ss_pred EEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 309 CCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 309 i~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++++. .+++++++++++|++++++.
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (453)
T 4ffc_A 424 LLPPLVIGDDLLDEGITALSDIIRAK 449 (453)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99874 59999999999999998763
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=217.24 Aligned_cols=290 Identities=13% Similarity=0.074 Sum_probs=189.8
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc------------ccH
Q 019899 16 DPSQIVLTAGATPAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA------------FSI 81 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~------------~~~ 81 (334)
+.+++++++|+++++..++..+.. ++++|++.+|+|.++........|..+..++.+...+.. .|+
T Consensus 108 ~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 187 (429)
T 3k28_A 108 SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDL 187 (429)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCH
Confidence 578999999999999999987753 678999999999866544331333322222221111110 178
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++++++++. ..+++++++..++|++|.+. +.+++++|.++|++||+++|+||+|.++ ..+... .. +..
T Consensus 188 ~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~-~~-~~~---- 257 (429)
T 3k28_A 188 ESVKYAFEQF---GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNC-GQ-GYY---- 257 (429)
T ss_dssp HHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTH-HH-HHH----
T ss_pred HHHHHHHHhC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcch-HH-HHh----
Confidence 9999998753 12456555544466677666 5777999999999999999999999887 544321 11 111
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-----hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-----LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
+....+.|+||.++ .|+|+||+++ ++++++.+.. ....++.+++++.++.++++..+ ++..+++
T Consensus 258 ---~~~~di~t~sK~~~-~G~~iG~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~~~~~~~ 326 (429)
T 3k28_A 258 ---GVTPDLTCLGKVIG-GGLPVGAYGG-KAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT------PESYVEF 326 (429)
T ss_dssp ---TCCCSEEEECGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC------HHHHHHH
T ss_pred ---CCCCceehhhhhhc-CCCCeEEEEE-cHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH------HHHHHHH
Confidence 11112357999998 6999999998 8888887754 23346788899988888876543 2344555
Q ss_pred HHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCC-------CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 236 KKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPS-------YSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 236 ~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
+++.+++.+.|++. +.....+..|.++++.+...... .......++...|+ ++||.+.|+. .
T Consensus 327 ~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~ 399 (429)
T 3k28_A 327 ERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQ------F 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST------T
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeEEecCC------C
Confidence 56666666666543 33222223345566666432110 11223456777755 4899999864 3
Q ss_pred CeEEEEecCCCcccHHHHHHHHHHHHHHcC
Q 019899 305 GWFRCCFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 305 ~~iRi~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
+.+|+++. .+++++++++++|++++++.+
T Consensus 400 ~~~r~~~~-~t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 400 EGLFLSTV-HSDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp SCBCCCTT-CCHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEECC-CCHHHHHHHHHHHHHHHHHHh
Confidence 46788765 799999999999999998753
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=218.50 Aligned_cols=298 Identities=11% Similarity=0.070 Sum_probs=186.9
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC----C----CCeEEecCCCCCChhhhhhhccC----------
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD----H----GNALLVPSPYYPGFDRDIRFRTG---------- 63 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~----~----gd~vl~~~p~~~~~~~~~~~~~g---------- 63 (334)
++++.+. ++.+.++|++++|+++|+..++..+.. + +|+|++.+|+|+++........|
T Consensus 93 a~~l~~~----~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 168 (448)
T 3dod_A 93 AETLIDI----SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGP 168 (448)
T ss_dssp HHHHHHH----SCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------------------------
T ss_pred HHHHHHh----CCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccC
Confidence 4455543 344568999999999999999988764 4 49999999999876544331222
Q ss_pred --cEEEEEeCCCCCCcc-----------ccHHHHHHHHHHHHHcCCceeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHh
Q 019899 64 --VELIPVHCRSTDNFA-----------FSITALDQAFNQARKRGVKVRGILICNPA-NPVGN-IIPRETLYELLDFARE 128 (334)
Q Consensus 64 --~~v~~v~~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~i~~~~p~-nptG~-~~~~~~l~~i~~~~~~ 128 (334)
..+..++. ++.+. .|+++|+++++.. ..++++|++..++ |++|. +.+.+.+++|.++|++
T Consensus 169 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~ 243 (448)
T 3dod_A 169 LMFESYKAPI--PYVYRSESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTT 243 (448)
T ss_dssp ----CEEECC--CCCTTSSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHH
T ss_pred CCCCceEeCC--CccccCCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHH
Confidence 12333443 22222 2588999998732 1256666665556 88885 5577789999999999
Q ss_pred cCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--------
Q 019899 129 KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK-------- 199 (334)
Q Consensus 129 ~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~-------- 199 (334)
||+++|+||+|.++.+.|..+. .... +....+.++||+++ .| +|+||+++ ++++++.+..
T Consensus 244 ~~~~lI~DEv~~g~g~~g~~~a-~~~~--------~~~~di~t~sK~l~-~G~~~ig~v~~-~~~~~~~~~~~~~~~~~~ 312 (448)
T 3dod_A 244 YDVLMIVDEVATGFGRTGKMFA-CEHE--------NVQPDLMAAGKGIT-GGYLPIAVTFA-TEDIYKAFYDDYENLKTF 312 (448)
T ss_dssp TTCEEEEECTTTTTTTTSSSSG-GGGG--------TCCCSEEEECGGGG-TTSSCCEEEEE-EHHHHHTTCSCGGGCCCC
T ss_pred hCCEEEEeccccCCCcccchhh-hhhc--------CCCCCEEEeccccc-CCcCceEEEEE-CHHHHHHhhhccccCCcc
Confidence 9999999999998766554321 1111 11112347899998 69 59999998 8888888865
Q ss_pred -hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcccCCCceeEEeeecCCcCCCCCh
Q 019899 200 -LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ---LGIRCSESSAGLYCWADMSGLIPSYSE 275 (334)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~ 275 (334)
....++.+++.+.++.++++..+. +...++++++.+++.+.|++ .+.....+..|.++|+.++........
T Consensus 313 ~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 387 (448)
T 3dod_A 313 FHGHSYTGNQLGCAVALENLALFES-----ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEP 387 (448)
T ss_dssp CCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBC
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccc
Confidence 234467788888888888754321 12233344444444444443 332211222466778888754221100
Q ss_pred ---h--hHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 276 ---K--GELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 276 ---~--~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
. ...++...+++ +||.+.|+ .+++|++++. .+++++++++++|++++++
T Consensus 388 ~~~~~~~~~~~~~~l~~-~Gv~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 388 YPADRRIGYKVSLKMRE-LGMLTRPL-------GDVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp CCGGGCHHHHHHHHHHH-TTEECCEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHH-CCcEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 13567788665 79999885 2689998664 6999999999999999875
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=208.80 Aligned_cols=262 Identities=17% Similarity=0.181 Sum_probs=182.3
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh----hhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI----RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
+.++++++++++..++.+++++||+|+++.|+|+++...+ . ..|.+++.++. .|++++++++++
T Consensus 82 ~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~-------~d~~~l~~~i~~---- 149 (398)
T 1gc0_A 82 AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIG-EFGVKLRHVDM-------ADLQALEAAMTP---- 149 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGG-GGTCEEEEECT-------TCHHHHHHHCCT----
T ss_pred cEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHH-HcCCEEEEECC-------CCHHHHHHhcCC----
Confidence 5666677789999999999999999999999999987765 4 67999999885 278999998875
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.+.. ++ . .+.++++.|+||
T Consensus 150 --~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~----~~----~-----~~~d~~~~S~sK 211 (398)
T 1gc0_A 150 --ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR----PL----E-----LGADLVVHSATK 211 (398)
T ss_dssp --TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC----GG----G-----GTCSEEEEETTT
T ss_pred --CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC----ch----h-----hCceEEEECCcc
Confidence 7999999999999999998 9999999999999999999998654321 11 1 456788999999
Q ss_pred cCCCCCceE-EEEeecCHHHHH-HHHHhhcc---cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 175 DLSLPGFRT-GVIYSYNESVLA-AAKKLTRF---CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 175 ~~~~~g~r~-g~i~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
.++.+|.|+ |++++ +++..+ .++..... ++.++..+.++...++.. ..+.++..++.+.+.+.|+++
T Consensus 212 ~~~~~~~~~~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~l~~~L~~~ 283 (398)
T 1gc0_A 212 YLSGHGDITAGIVVG-SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL-------NLRMDRHCANAQVLAEFLARQ 283 (398)
T ss_dssp TTTCSSSCCCEEEEE-CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCeEEEEEE-ChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 999889887 99998 665544 55544333 346777777666666542 233444555666666666654
Q ss_pred C-C--------------cccC----CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC---CCC------cC-
Q 019899 250 G-I--------------RCSE----SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP---GSA------CH- 300 (334)
Q Consensus 250 g-~--------------~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~---g~~------~~- 300 (334)
+ + ++.. ..+++ +.++++.. .+....++++.++.+.. |+. +.
T Consensus 284 ~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~~---------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~ 353 (398)
T 1gc0_A 284 PQVELIHYPGLASFPQYTLARQQMSQPGGM-IAFELKGG---------IGAGRRFMNALQLFSRAVSLGDAESLAQHPAS 353 (398)
T ss_dssp TTEEEEEEC----------------CCTTE-EEEEETTH---------HHHHHHHHHHCSSSEECSCCSCSSCEEECGGG
T ss_pred CCeeEEECCCCCCCcCHHHHHhhCCCCceE-EEEEECCC---------HHHHHHHHHhCCCceeccCCCCcceeeecccc
Confidence 2 1 1111 12444 44566531 23445557778877654 321 10
Q ss_pred -----C---------CCCCeEEEEecC-CCcccHHHHHHHHHH
Q 019899 301 -----C---------IEPGWFRCCFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 301 -----~---------~~~~~iRi~~~~-~~~~~l~~~l~~l~~ 328 (334)
. ..++.+|+|++. .++++++.+.+.|++
T Consensus 354 ~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 354 MTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp TTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 0 014799999994 345556665555554
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=207.68 Aligned_cols=263 Identities=14% Similarity=0.140 Sum_probs=188.1
Q ss_pred cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh----hhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 19 QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI----RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
++++++++++++..++.+++++||+|+++.|+|+++...+ + ..|.+++.++. .|++++++++++
T Consensus 76 ~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~-~~g~~~~~v~~-------~d~~~l~~~i~~---- 143 (389)
T 3acz_A 76 GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLP-RFGIEVDLIDT-------SDVEKVKAAWKP---- 143 (389)
T ss_dssp EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHH-HTTCEEEEECT-------TCHHHHHHTCCT----
T ss_pred eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH-HcCCEEEEECC-------CCHHHHHHhcCC----
Confidence 6777888889999999999999999999999999877764 5 68999999985 378999998875
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
++++|++++|+||||.+.| +++|.++|+++|+++|+|++|..+.+. .++ . .+.++++.|+||
T Consensus 144 --~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~----~~~----~-----~~~di~~~S~sK 205 (389)
T 3acz_A 144 --NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL----KPL----E-----LGADIALHSVSK 205 (389)
T ss_dssp --TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC----CGG----G-----TTCSEEEEETTT
T ss_pred --CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc----Ccc----c-----cCCeEEEECChh
Confidence 7899999999999999999 999999999999999999999875431 111 1 456789999999
Q ss_pred cCCCCCceE-EEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Q 019899 175 DLSLPGFRT-GVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG- 250 (334)
Q Consensus 175 ~~~~~g~r~-g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g- 250 (334)
.++.+|.|+ ||++++++++.+.++..... .+.++..+.++...++.. . .+.++..++.+.+.+.|++++
T Consensus 206 ~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l---~----~r~~~~~~~~~~l~~~l~~~~~ 278 (389)
T 3acz_A 206 YINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTL---P----IRMQIHMENGLKVAKFLEQHEK 278 (389)
T ss_dssp TTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH---H----HHHHHHHHHHHHHHHHHHHCTT
T ss_pred hccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHH---H----HHHHHHHHHHHHHHHHHHcCCC
Confidence 998899998 99998443888888765543 334555566555555542 1 222334445555556665531
Q ss_pred --------C------ccc----CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcC---C------CCcCC--
Q 019899 251 --------I------RCS----ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP---G------SACHC-- 301 (334)
Q Consensus 251 --------~------~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~---g------~~~~~-- 301 (334)
+ ++. ...++ ++.+.++. .+....++++.||.+.+ | ..+..
T Consensus 279 v~~~~~~~L~~~~~~~~~~~~~~g~g~-~~~~~l~~----------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~ 347 (389)
T 3acz_A 279 IVKVNHPGLESFPGHDIAKKQMTGYGS-TFLFEMKS----------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMT 347 (389)
T ss_dssp EEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEESS----------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTT
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCCe-EEEEEECC----------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccc
Confidence 1 111 11233 44466642 13344557778887765 3 22211
Q ss_pred -------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 302 -------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 -------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
..++.+|+|++ .++.++.++.|.+++++
T Consensus 348 ~~~~~~~~~~~~g~~~~~iRlsvg---~~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 348 HAAVPENIMRKQGITPELVRISVG---IENVDDIIADLKQALEL 388 (389)
T ss_dssp TSSSCHHHHHHHTCCTTEEEEECC---SSCHHHHHHHHHHHHTC
T ss_pred cccCCHHHHHhcCCCcCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 12578999998 45888888888888764
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=213.74 Aligned_cols=278 Identities=13% Similarity=0.158 Sum_probs=195.2
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCc
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVK 97 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 97 (334)
+++++|+|+++++..++.++. +||+|+++.|+|+++...+. ..|.+++.+++++ +++.+|++++++++++ +
T Consensus 68 ~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~-~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~ 138 (424)
T 2po3_A 68 RHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALR-WIGLTPVFADIDP-DTGNLDPDQVAAAVTP------R 138 (424)
T ss_dssp SEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHH-HTTCEEEEECBCT-TTSSBCHHHHGGGCCT------T
T ss_pred CeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHH-HcCCEEEEEecCC-CcCCcCHHHHHHhhCc------C
Confidence 589999999999999999985 78999999999999999888 8999999999853 4678999999998875 7
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccc-ccccCCCCcchhhhhhhccccCCCcEEEEecccccC
Q 019899 98 VRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYG-GSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDL 176 (334)
Q Consensus 98 ~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~ 176 (334)
+++|+++ ||||...+ +++|.++|+++|++||+|++|+ ++.+.+. ++.. .+ .+++.|+||..
T Consensus 139 ~~~v~~~---~~tG~~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~--------~~-di~~~S~sk~K 200 (424)
T 2po3_A 139 TSAVVGV---HLWGRPCA---ADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGS--------LG-DAEVFSFHATK 200 (424)
T ss_dssp EEEEEEE---CGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTS--------SS-SEEEEECCTTS
T ss_pred CcEEEEE---CCCCCcCC---HHHHHHHHHHcCCEEEEECccccCCeECCe---eccc--------cc-CEEEEeCCCCC
Confidence 8888876 48999877 9999999999999999999998 4555432 1111 12 27888999555
Q ss_pred CCCCceEEEEeecCHHHHHHHHHhhcccC----------CC-hHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 177 SLPGFRTGVIYSYNESVLAAAKKLTRFCS----------IS-APTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAG 245 (334)
Q Consensus 177 ~~~g~r~g~i~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (334)
+++|.|+||++++++++.+.++....... .+ .+.+.+++..+.. .+.+.+..++..++++++.+.
T Consensus 201 ~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~ 276 (424)
T 2po3_A 201 AVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREH 276 (424)
T ss_dssp SSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 55668999999955888888876543211 00 1112222222211 223455667777888888899
Q ss_pred HHhC-CCcccC-CCce----eEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--------------CC-
Q 019899 246 LKQL-GIRCSE-SSAG----LYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--------------EP- 304 (334)
Q Consensus 246 l~~~-g~~~~~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--------------~~- 304 (334)
|+++ ++++.. +.++ +++++.++.... ..+..++... ++++||.+.+. |+.. .+
T Consensus 277 L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~-L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~ 350 (424)
T 2po3_A 277 LADLPGVLVADHDRHGLNNHQYVIVEIDEATT---GIHRDLVMEV-LKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPH 350 (424)
T ss_dssp TCSCTTEEECCGGGGSCCCCCCEEEEECHHHH---SSCHHHHHHH-HHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHH
T ss_pred hccCCCccccCCCCCCccccEEEEEEECCccc---hhhHHHHHHH-HHHCCCceecc--cCCccccchhhhhcCCCCChh
Confidence 9876 777654 3332 334466653100 0123567776 56689999872 2210 01
Q ss_pred ------CeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 305 ------GWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 305 ------~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
..+|+++.. .+++|++++++.|++++++
T Consensus 351 ~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 351 TERLAARVLSLPTGTAIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp HHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 127776444 6999999999999998765
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=215.27 Aligned_cols=309 Identities=12% Similarity=0.166 Sum_probs=214.9
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC--------------CCCeEEecCCCCCChhhhhhhccCc---
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD--------------HGNALLVPSPYYPGFDRDIRFRTGV--- 64 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~--------------~gd~vl~~~p~~~~~~~~~~~~~g~--- 64 (334)
++|+.+.++ ++.+.+.+++|+|+|+++..++.++.+ +++.|+++.++|.++...++ ..|.
T Consensus 141 ~~~l~~~~g--~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~-~~g~g~~ 217 (511)
T 3vp6_A 141 LKKMREIVG--WSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA-ALGFGTD 217 (511)
T ss_dssp HHHHHHHHT--CCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTTSCGG
T ss_pred HHHHHHHhC--CCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHH-HcCCCCC
Confidence 567888777 544467899999999999988877654 56789999999999999998 8887
Q ss_pred EEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccccc
Q 019899 65 ELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIF 144 (334)
Q Consensus 65 ~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~ 144 (334)
+++.++++ .++.+|+++|+++|++....+..+++|++++|+||+|.+.+ +++|.++|++||+++++|++|+.+..
T Consensus 218 ~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~ 292 (511)
T 3vp6_A 218 NVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYNLWLHVDAAWGGGLL 292 (511)
T ss_dssp GEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred cEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc---HHHHHHHHHHcCCEEEEEccchhhHh
Confidence 89999984 55789999999999987666666999999999999999988 99999999999999999999987554
Q ss_pred CCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-ccc----------------C--
Q 019899 145 GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-RFC----------------S-- 205 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-~~~----------------~-- 205 (334)
.......... +. .+.+.++.+++|+++.+ ..+|+++++++.+.+...... .+. +
T Consensus 293 ~~~~~~~~~~-----g~-~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 365 (511)
T 3vp6_A 293 MSRKHRHKLN-----GI-ERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQ 365 (511)
T ss_dssp GCTTTGGGGT-----TG-GGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSC
T ss_pred hChhhhhhcc-----CC-ccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCC
Confidence 3221111110 00 23356778999999744 668888887776655543211 110 0
Q ss_pred ----CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC---CCceeEEeeecCCcCCCC--Ch
Q 019899 206 ----ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE---SSAGLYCWADMSGLIPSY--SE 275 (334)
Q Consensus 206 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~---~~~g~~~~~~~~~~~~~~--~~ 275 (334)
.......++..++ ..+.+.++.++..++++++.+.|++. |+++.. +..+.++|...|...... ..
T Consensus 366 ~~r~~~al~~~~al~~~-----g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~ 440 (511)
T 3vp6_A 366 CGRHVDIFKFWLMWKAK-----GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 440 (511)
T ss_dssp SSCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCH
T ss_pred CCCchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccch
Confidence 0112222222222 24566788889999999999999987 888765 555665554444432211 00
Q ss_pred -------hhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEec-C-CCcccHHHHHHHHHHHHHH
Q 019899 276 -------KGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFT-S-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 276 -------~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~-~-~~~~~l~~~l~~l~~~~~~ 332 (334)
....++.+.|.+ .|+.+.. ..+.....+++|++++ . .+++|++.+++.|+++.++
T Consensus 441 ~~~~~l~~~~~~l~~~L~~-~G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 441 QRREKLHKVAPKIKALMME-SGTTMVG-YQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTSCEEE-EEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHh-cCCEEEE-EEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 112357777555 5654432 1111112357999984 3 5899999999999988765
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=215.11 Aligned_cols=297 Identities=11% Similarity=0.073 Sum_probs=201.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcH-HHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC-CCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGAT-PAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS-TDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~-~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~~~ 80 (334)
+++.+++.++++++ +++|+|+| .++..++.++.. +++.|+++.++|+++...++ ..|.+++.+++.+ ++++.+|
T Consensus 138 ~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~-~~G~~~~~v~~~~~~~~~~~d 215 (456)
T 2z67_A 138 ILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVS-FVGMNMRLVETVLDGDRVYVP 215 (456)
T ss_dssp HHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HTTCEEEEECCEEETTEEECC
T ss_pred HHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHH-HcCCCceEEEEeccCCCCCcC
Confidence 33444444556666 99999999 566655555433 67789999999999999888 8999999988632 3567899
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh-hhhhhcc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM-AEILEAE 159 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~-~~~~~~~ 159 (334)
+++|++++++.... .++.+|++++|+||||.+.| +++|.++|+++|+++++|++|+.+.++ ..+. .....
T Consensus 216 ~~~l~~~i~~~~~~-~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g---~~~~~~~~~~-- 286 (456)
T 2z67_A 216 VEDIENAIKKEIEL-GNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY---YLEKLKKAFK-- 286 (456)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH---HHHHHHHHHT--
T ss_pred HHHHHHHHHHHhhC-CCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH---hhHHHHHhhC--
Confidence 99999999321111 26777889999999999999 999999999999999999999865431 1111 11111
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
.+.++++.|++|+++ .+.++|+++++++++++.+......+...+.. .++...+... ..+.+.+..++..+++
T Consensus 287 ---~~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~-~~~~aal~~l--~~~~~~~~~~~~~~~~ 359 (456)
T 2z67_A 287 ---YRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPV-VNTLVSLLSM--GSKNYLELVKNQKNSK 359 (456)
T ss_dssp ---SCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred ---CCCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHH-HHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 134467889999765 56789999997788877774322222111211 1122222111 1344577788899999
Q ss_pred HHHHHHHHhC----CCcccCCCceeEEeeec--CCcCCCCChhhHHHHHHHHHHhcCe---EEc------CCCCcCCCCC
Q 019899 240 DSFVAGLKQL----GIRCSESSAGLYCWADM--SGLIPSYSEKGELELWDKLLNIAKI---NVT------PGSACHCIEP 304 (334)
Q Consensus 240 ~~~~~~l~~~----g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~gi---~v~------~g~~~~~~~~ 304 (334)
+++.+.|++. |+.+..+. ++ +++.+ +.. ..++...|.+ +|| .+. +|..|.....
T Consensus 360 ~~l~~~L~~~~~~~g~~v~~~~-~~-v~~~~~~~~~--------~~~l~~~L~~-~gi~~~rv~~~~g~f~G~~~~~~~~ 428 (456)
T 2z67_A 360 KLLDELLNDLSKKTGGKFLDVE-SP-IASCISVNSD--------PVEIAAKLYN-LRVTGPRGIKKTDHFGNCYLGTYTH 428 (456)
T ss_dssp HHHHHHHHHHHHHSSCCBCCCC-CS-SEEEEECSSC--------HHHHHHHHHH-TTEESCEEECTTCHHHHTCSSCCSC
T ss_pred HHHHHHHHhcccccCCEecCCC-Ce-EEEEEecccH--------HHHHHHHHHH-cCCCcceEEeecCccccccccccCc
Confidence 9999999887 77776666 43 34555 321 2467777554 665 343 1334433335
Q ss_pred CeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 305 GWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 305 ~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+++|++++. .+++++++++++|++++
T Consensus 429 ~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 429 DYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred chhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 799999884 69999999999998764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=210.81 Aligned_cols=279 Identities=14% Similarity=0.163 Sum_probs=196.7
Q ss_pred cEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCc
Q 019899 19 QIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVK 97 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 97 (334)
++++++++++++..++.++ +++||+|+++.|+|.++...+. ..|.+++.+++++ +++.+|++++++++++ +
T Consensus 59 ~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~------~ 130 (418)
T 2c81_A 59 YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVL-NVNALPVFVDVEA-DTYCIDPQLIKSAITD------K 130 (418)
T ss_dssp EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-HTTCEEEEECBCT-TTCSBCHHHHGGGCCT------T
T ss_pred cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHH-HcCCEEEEEecCC-CCCCcCHHHHHHhhCC------C
Confidence 5777888899999999999 8999999999999999999998 8999999999853 3678999999998875 7
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcEEEEecc--cc
Q 019899 98 VRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRVHIIYGL--SK 174 (334)
Q Consensus 98 ~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--sK 174 (334)
+++|+++ ||||...+ +++|.++|+++|++||+|++|+.+. +++.. +.. .+ ++.+.|+ ||
T Consensus 131 ~~~v~~~---~~~G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~--------~~-~~~~~s~s~~K 192 (418)
T 2c81_A 131 TKAIIPV---HLFGSMAN---MDEINEIAQEHNLFVIEDCAQSHGSVWNNQR---AGT--------IG-DIGAFSCQQGK 192 (418)
T ss_dssp EEEECCB---CCTTCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTS--------SS-SEEEEECCTTS
T ss_pred CeEEEEe---CCcCCccc---HHHHHHHHHHCCCEEEEECcccccCccCCEe---ccc--------cc-ceEEEeccCCc
Confidence 8877764 58999877 9999999999999999999999865 43321 111 12 2556677 99
Q ss_pred cCCCCCceEEEEeecCHHHHHHHHHhhccc--------------C--C---C--------hHHHHHHHHhhCChHHHHHH
Q 019899 175 DLSLPGFRTGVIYSYNESVLAAAKKLTRFC--------------S--I---S--------APTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--------------~--~---~--------~~~~~~~~~~l~~~~~~~~~ 227 (334)
.++. | +.||++++++++.+.++...... . . + ...+.++... . .+.
T Consensus 193 ~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~--~----l~~ 264 (418)
T 2c81_A 193 VLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLD--Q----LQE 264 (418)
T ss_dssp SSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHH--H----HTT
T ss_pred ccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHH--H----HHH
Confidence 9985 8 99999986688888776543221 1 0 0 0111111111 0 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCc-eeEE----eeecCCcCCCCChhhHHHHHHHHHHhcCeE---EcCCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQL-GIRCS-ESSA-GLYC----WADMSGLIPSYSEKGELELWDKLLNIAKIN---VTPGS 297 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~-g~~~~-~~~~-g~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~---v~~g~ 297 (334)
+.+..++.+++++++.+.|+++ ++++. .+.+ +... .+.++.... ...+..++...|.+++||. +.++.
T Consensus 265 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~~gI~~~~v~~~~ 342 (418)
T 2c81_A 265 LDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKF--GGLNADQFCEILREKLNMGTFYLHPPY 342 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGT--TTCCHHHHHHHHHHHHTCCTTTEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccc--cccCHHHHHHHHHHcCCCCcccccccc
Confidence 3445566667788889999887 77776 3444 3322 266653100 0113467888866544999 88765
Q ss_pred CcCC---------------------------CC-------CCeEEEEecC-C-CcccHHHHHHHHHHHHHHc
Q 019899 298 ACHC---------------------------IE-------PGWFRCCFTS-L-THEDIPLVIERIQKVAETC 333 (334)
Q Consensus 298 ~~~~---------------------------~~-------~~~iRi~~~~-~-~~~~l~~~l~~l~~~~~~~ 333 (334)
.... .- .+.+|++++. . +++|++++++.|++++++.
T Consensus 343 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 343 LPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp CCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred cccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 2210 00 1479999975 7 8999999999999998764
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=218.65 Aligned_cols=292 Identities=13% Similarity=0.012 Sum_probs=200.8
Q ss_pred CCCCCCCc-----EEEecCcHHHHHHHHHHhcC--------CC-----CeEEecCCCCCChhhhhhhccCcEEEEEeCCC
Q 019899 12 AVSFDPSQ-----IVLTAGATPAVEILCFCLAD--------HG-----NALLVPSPYYPGFDRDIRFRTGVELIPVHCRS 73 (334)
Q Consensus 12 ~~~~~~~~-----i~~~~g~~~~~~~~~~~l~~--------~g-----d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~ 73 (334)
.++++.++ +++|+|+++++..++.++.+ +| ++|+++. +|.++...+. ..|.+++.+|+++
T Consensus 93 l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~-~~G~~v~~v~~~~ 170 (452)
T 2dgk_A 93 LWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFAR-YWDVELREIPMRP 170 (452)
T ss_dssp HTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHH-HTTCEEEECCCBT
T ss_pred HhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHH-HcCceEEEEecCC
Confidence 34455554 99999999999999888753 44 5899999 9999999888 8999999999843
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc------CcEEEEecccccccc---
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK------NIHVISDEIYGGSIF--- 144 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~vi~D~~~~~~~~--- 144 (334)
+++.+|+++|+++|++ ++++|++++|+||||.+.| +++|.++|+++ ++++++|++|+.+..
T Consensus 171 -~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~ 240 (452)
T 2dgk_A 171 -GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240 (452)
T ss_dssp -TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred -CCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhh
Confidence 3688999999999976 7899999999999999998 88899999985 999999999987642
Q ss_pred CCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHH-HHHHHhhccc-----------CC---ChH
Q 019899 145 GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVL-AAAKKLTRFC-----------SI---SAP 209 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~-~~~~~~~~~~-----------~~---~~~ 209 (334)
.+.....+ .. .+.+.+..|++|++ +.|.++|+++++++.+. +.+.....+. +. ...
T Consensus 241 ~~~~~~~~-~~-------~~~d~~~~~~hK~~-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 311 (452)
T 2dgk_A 241 APDIVWDF-RL-------PRVKSISASGHKFG-LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVI 311 (452)
T ss_dssp CTTCCCST-TS-------TTEEEEEEETTTTT-CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHH
T ss_pred Cccchhhc-CC-------CCCcEEEECccccc-CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHH
Confidence 11100111 00 35566778999954 58889999999665432 3332111111 11 112
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC----CceeEEeeecCCcCCCCChhhHHHHHHH
Q 019899 210 TQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES----SAGLYCWADMSGLIPSYSEKGELELWDK 284 (334)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (334)
.+.++...+ ..+.+.++.++..++++++.+.|++. ++++..+ ....++.++++.... ...+..++.+.
T Consensus 312 ~~~aal~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~--~~~~~~~l~~~ 384 (452)
T 2dgk_A 312 AQYYEFLRL-----GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED--PGYTLYDLSER 384 (452)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCC--CSCCHHHHHHH
T ss_pred HHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCccc--ccCCHHHHHHH
Confidence 222222222 13445777888999999999999988 4877643 223344456654210 01123578888
Q ss_pred HHHhcCeEEcCCCCcC-CCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 285 LLNIAKINVTPGSACH-CIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 285 ll~~~gi~v~~g~~~~-~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
|. ++||.+....... .....++|++++. .|+++++++++.|++++++
T Consensus 385 L~-~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 385 LR-LRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 433 (452)
T ss_dssp HH-HTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HH-hcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 54 5798654211110 1124589999985 5889999999999998765
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=213.52 Aligned_cols=307 Identities=13% Similarity=0.176 Sum_probs=213.3
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC--------CC-----C-eEEecCCCCCChhhhhhhccCc---E
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLAD--------HG-----N-ALLVPSPYYPGFDRDIRFRTGV---E 65 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~--------~g-----d-~vl~~~p~~~~~~~~~~~~~g~---~ 65 (334)
+|+.+.++ .+.+.+++++|+|+|+++..++.++.. +| + +|+++.+.|+++...+. ..|. +
T Consensus 139 ~~la~~~g--~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~-~~g~g~~~ 215 (504)
T 2okj_A 139 KKMREIVG--WSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA-ALGFGTDN 215 (504)
T ss_dssp HHHHHHHT--CCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTTSCGGG
T ss_pred HHHHHHhC--CCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHH-HcCCCccc
Confidence 56666655 332267999999999999999888742 45 6 79999999999999888 7666 8
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC
Q 019899 66 LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG 145 (334)
Q Consensus 66 v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~ 145 (334)
++.+|++ +++.+|+++|++++++...++.++++|++++|+||||.+.+ +++|.++|+++|+++++|++|+.+.+.
T Consensus 216 v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g~~lhvD~a~~~~~~~ 290 (504)
T 2okj_A 216 VILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLM 290 (504)
T ss_dssp EEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred EEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEehhhhhHHHh
Confidence 9999973 56789999999999876666667999999999999999988 999999999999999999999987653
Q ss_pred CCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-hhccc-C------------------
Q 019899 146 NEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-LTRFC-S------------------ 205 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-~~~~~-~------------------ 205 (334)
...+...... . .+.++++.+++|+++.+ .++|+++++++++.+.... ...+. +
T Consensus 291 ~~~~~~~~~g-----~-~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 363 (504)
T 2okj_A 291 SRKHRHKLNG-----I-ERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQC 363 (504)
T ss_dssp CTTTGGGGTT-----G-GGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCS
T ss_pred CHhhHhhcCC-----c-ccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCC
Confidence 3222111110 1 13346677999998744 6899999966656554321 11111 0
Q ss_pred ---CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC---CCceeEEeeecCCcCCC--CC--
Q 019899 206 ---ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE---SSAGLYCWADMSGLIPS--YS-- 274 (334)
Q Consensus 206 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~---~~~g~~~~~~~~~~~~~--~~-- 274 (334)
.+++.+.++..++. .+.+.++.++..++++++.+.|++. ++++.. +..++++|...|..... ..
T Consensus 364 ~rr~~~l~~~a~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~ 438 (504)
T 2okj_A 364 GRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQ 438 (504)
T ss_dssp SCBCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHH
T ss_pred CCCccHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchh
Confidence 12344444433332 3445777888889999999999886 788764 66677665544432100 00
Q ss_pred -----hhhHHHHHHHHHHhcCe-EEcCCCCcCCCCCCeEEEEec-C-CCcccHHHHHHHHHHHHHH
Q 019899 275 -----EKGELELWDKLLNIAKI-NVTPGSACHCIEPGWFRCCFT-S-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 275 -----~~~~~~~~~~ll~~~gi-~v~~g~~~~~~~~~~iRi~~~-~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.....++...|.+ .|+ .+.++. +. ...+++|++++ . .+++|++++++.|++++++
T Consensus 439 ~~~~~~~~~~~l~~~L~~-~G~~~~~~~~-~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 439 RREKLHKVAPKIKALMME-SGTTMVGYQP-QG-DKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp HHHHHTTHHHHHHHHHHH-HTSCEEEEEE-ET-TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHh-CCcEEEEeeE-EC-CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0012456677555 575 443222 21 11358999997 4 5899999999999998765
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=217.66 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=185.1
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcE-------------------EEEEeCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVE-------------------LIPVHCRST 74 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~-------------------v~~v~~~~~ 74 (334)
+++++++++|+++++..++.... .++++|++.+|+|+++........|.. ++.++.
T Consensus 107 ~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (427)
T 3fq8_A 107 SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY--- 183 (427)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET---
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC---
Confidence 57899999999999999984331 345789999999987554333122221 233332
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIP-RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
.|+++|++++++. ..++++|+++.++|++|.+.+ .+.+++|.++|++||++||+||+|.++ ..+... ..
T Consensus 184 ----~d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~-~~- 253 (427)
T 3fq8_A 184 ----NDLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGG-VQ- 253 (427)
T ss_dssp ----TCHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTH-HH-
T ss_pred ----CCHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcch-hh-
Confidence 1789999998762 225676666666778888776 455999999999999999999999987 444321 11
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-----hcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
.. .+....+.|+||+++ +|+|+||+++ ++++++.+... ...++.+++.+.++.++++..+.
T Consensus 254 ~~-------~~~~~di~t~sK~~~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~----- 319 (427)
T 3fq8_A 254 EK-------FGVTPDLTTLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ----- 319 (427)
T ss_dssp HH-------TTCCCSEEEECGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-----
T ss_pred Hh-------cCCCCChhhhhhhhh-CCcceEEEEE-cHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-----
Confidence 11 111122468999999 8999999998 88988887642 33456688888887777642210
Q ss_pred HHHHHHHHHHHHHHHHHHHh----CCCcccCCCceeEEeeecCCcCCC-------CChhhHHHHHHHHHHhcCeEEcCCC
Q 019899 229 ETNKRRIKKLYDSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIPS-------YSEKGELELWDKLLNIAKINVTPGS 297 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~~g~ 297 (334)
+...++++++.+++.+.|++ .++....+..|.++|++++..... .......++...|++ +||.+.|+.
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~ 398 (427)
T 3fq8_A 320 PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQ 398 (427)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSST
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCC
Confidence 12233344444444444433 344333344567788888653111 112234567777554 799999865
Q ss_pred CcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 298 ACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 298 ~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
. .++|+++. .+++++++++++|++++++
T Consensus 399 ~------~r~~~~~~-~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 399 F------EAGFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp T------SCEECCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred C------CCEEeeCc-CCHHHHHHHHHHHHHHHHh
Confidence 3 23454443 6999999999999999875
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-28 Score=219.32 Aligned_cols=280 Identities=13% Similarity=0.067 Sum_probs=188.4
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCC----ccc
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDN----FAF 79 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~----~~~ 79 (334)
-+++.+++ ++.+ +++++++|+++++.+++.+++++||+|+++.|+|.++...+. ..|.+++.++...+++ +.+
T Consensus 61 ~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~-~~G~~~~~v~~~~~~~~~~~~~~ 137 (446)
T 2x3l_A 61 KSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALD-ISQQEGHFIETHQSPLTNHYNKV 137 (446)
T ss_dssp HHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHH-HHTCCEEECEEEECTTTSSEEEE
T ss_pred HHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHH-HcCCeEEEEeCeeccccCcCCCC
Confidence 35566677 7665 689999999999999999999999999999999999999998 8899999998732222 567
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccc-cccCCCCcchhhhhhhc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGG-SIFGNEEFVSMAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~-~~~~~~~~~~~~~~~~~ 158 (334)
|++++ +.+ +++++++++ .|++|.+.+ +++|.++|+++|+++|+|++|+. +.|.+. ..+...
T Consensus 138 d~~~l---~~~------~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~---- 199 (446)
T 2x3l_A 138 NLSRL---NND------GHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLN---- 199 (446)
T ss_dssp EC----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGG----
T ss_pred CHHHH---cCC------CceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHH----
Confidence 88877 333 789999998 556999999 89999999999999999999986 334333 222222
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHH--HHHHhhc---ccCCChHHHHHHHHhhCChHHHHHH-HHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLA--AAKKLTR---FCSISAPTQRLLISMLSDTKFIQEY-LETNK 232 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 232 (334)
.+.++++.|+||+++ ++.+.||+++++ ++.+ .+..... ..+.+.....++..++. +++.. ..+..
T Consensus 200 ----~g~Di~~~S~~K~l~-~~~g~g~l~~~~-~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~---~l~~~g~~~~~ 270 (446)
T 2x3l_A 200 ----YQADYVVQSFHKTLP-ALTMGSVLYIHK-NAPYRENIIEYLSYFQTSSPSYLIMASLESAAQ---FYKTYDSTLFF 270 (446)
T ss_dssp ----GTCSEEEECHHHHSS-SCTTCEEEEEET-TCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHH---HHHHCCCHHHH
T ss_pred ----cCCCEEEECCccccc-cccccEEEEEcC-CcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHH---HHHHhCHHHHH
Confidence 233488899999764 334579999844 3322 3332211 22333333333333221 12221 11134
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc-CCCCcCCCCCCeEEEEe
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT-PGSACHCIEPGWFRCCF 311 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-~g~~~~~~~~~~iRi~~ 311 (334)
++..++.+++.+. ++++..+.++.++|+.++. . ++.++.+.|.+ +||.+. +|. +++|+++
T Consensus 271 ~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~-~------~~~~l~~~L~~-~GI~v~~~g~-------~~iRi~~ 331 (446)
T 2x3l_A 271 AKRAQLIECLENK----GFEMLQVDDPLKLLIKYEG-F------TGHDIQNWFMN-AHIYLELADD-------YQALAIL 331 (446)
T ss_dssp HHHHHHHHHHHHH----TCEEEECSSTTEEEEECTT-S------CHHHHHHHHHH-TTEEESEECS-------SCEEEEC
T ss_pred HHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCC-c------CHHHHHHHHHH-CCCEEEecCC-------CEEEEEe
Confidence 4444445555544 7777655555568888862 1 34577887555 599987 432 5799999
Q ss_pred cC-CCcccHHHHHHHHHHHHHHc
Q 019899 312 TS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 312 ~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+. .+++++ +++++|+++++++
T Consensus 332 ~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 332 PLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp CCCCTTCCC-CHHHHHHHHHTCC
T ss_pred ecCCCHHHH-HHHHHHHHHHHhh
Confidence 85 588999 9999999987653
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=209.34 Aligned_cols=284 Identities=10% Similarity=0.044 Sum_probs=199.7
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh---cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCL---ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l---~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
++.+++.++.+ ++++++|+++++..++.++ .++||+|+++.|+|+++...+. ..|.+++.+++++ + ..+|++
T Consensus 38 ~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~-~~~d~~ 112 (375)
T 2fnu_A 38 EEALCEFLGVK--HALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLL-ESGYTPVFAGIKN-D-GNIDEL 112 (375)
T ss_dssp HHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHH-HTTCEEEECCBCT-T-SSBCGG
T ss_pred HHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHH-HCCCEEEEeccCC-C-CCCCHH
Confidence 33344334433 8999999999999999999 8899999999999999999988 8999999999853 2 378999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++++++++ ++++|++++| ||.+.+ +++|.++|+++|+++|+|++|+.+.... ...+..
T Consensus 113 ~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~-----~~~~~~----- 170 (375)
T 2fnu_A 113 ALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQ-----NKKVGG----- 170 (375)
T ss_dssp GSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEET-----TEETTS-----
T ss_pred HHHhhcCc------CceEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEEECccccCCeEC-----Ceeccc-----
Confidence 99988865 7888888866 999999 8999999999999999999998643211 011111
Q ss_pred CCcEEEEeccc--ccCCCCCceEEEEee-cCHHHHHHHHHhhccc------------------CCChHHHHHHHHhhCCh
Q 019899 163 KDRVHIIYGLS--KDLSLPGFRTGVIYS-YNESVLAAAKKLTRFC------------------SISAPTQRLLISMLSDT 221 (334)
Q Consensus 163 ~~~~~~~~s~s--K~~~~~g~r~g~i~~-~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~ 221 (334)
.+ ++.+.|+| |.++. | +|++++ +++++.+.++...... ..+.....+....
T Consensus 171 ~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---- 242 (375)
T 2fnu_A 171 FA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQ---- 242 (375)
T ss_dssp SS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHH----
T ss_pred cC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHH----
Confidence 22 36677777 99974 6 567666 4588888776543211 1222222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-----CceeEEeeecCCcCCCCChh-hHHHHHHHHHHhcCeEEc
Q 019899 222 KFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES-----SAGLYCWADMSGLIPSYSEK-GELELWDKLLNIAKINVT 294 (334)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~-----~~g~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~ 294 (334)
.+++.+..++.+++++++.+.|+++ ++++..+ ..++++|+.++.. .. +..++...| .++||.+.
T Consensus 243 ---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L-~~~gi~v~ 313 (375)
T 2fnu_A 243 ---LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK-----FFTCKKLILESL-HKRGILAQ 313 (375)
T ss_dssp ---HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG-----GGGGHHHHHHHH-HHTTEECB
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc-----ccchHHHHHHHH-HHCCCCcc
Confidence 1223556677888899999999887 6776544 1234556777632 01 346778885 56899988
Q ss_pred CCCC-------cC-------CC-----CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 295 PGSA-------CH-------CI-----EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 295 ~g~~-------~~-------~~-----~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+... ++ .. .++++|++++. .++++++++++.|++++++.
T Consensus 314 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 314 VHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp CCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3211 10 00 12679999985 58999999999999998765
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=212.65 Aligned_cols=280 Identities=13% Similarity=0.016 Sum_probs=192.2
Q ss_pred EEE-ecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh-h--hhhc--cCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 20 IVL-TAGATPAVEILCFCLADHGNALLVPSPYYPGFDR-D--IRFR--TGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 20 i~~-~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~-~--~~~~--~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+.+ ++++++++..++.+++++||+|+++.|+|.++.. . .. . .+..++.+++++ +++.+|++++++++++.
T Consensus 109 ~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-- 184 (447)
T 3h7f_A 109 ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLN-FSGKLYENGFYGVDP-ATHLIDMDAVRATALEF-- 184 (447)
T ss_dssp EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTS-HHHHSSEEEEECCCT-TTCSCCHHHHHHHHHHH--
T ss_pred eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhh-hcCCeeEEEEcCcCc-ccCCcCHHHHHHHHHhc--
Confidence 444 7788999999999999999999999999987322 1 12 2 234566666643 44689999999999764
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccc-cccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGG-SIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
+++++++++|+||++. + +++|.++|+++|+++|+|++|.. +.+.+.....+ ...++++.|+
T Consensus 185 ---~~~~i~~~~~~~~~~~--~---l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~----------~~~di~~~s~ 246 (447)
T 3h7f_A 185 ---RPKVIIAGWSAYPRVL--D---FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV----------PHADVVSTTV 246 (447)
T ss_dssp ---CCSEEEEECSSCCSCC--C---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST----------TTCSEEEEES
T ss_pred ---CCeEEEEcCCCCCCcc--C---HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC----------CCCcEEEecC
Confidence 7888888899998876 5 99999999999999999999743 33332211111 1234778999
Q ss_pred cccCCCCCceEEEEeecCHHHHHHHHHhhccc---CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 173 SKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC---SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
||++ +|.|.||+++ ++++.+.+......+ +.+...+.++..++... .++.+.++.+++.++++++.+.|++.
T Consensus 247 sK~l--~G~~gG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (447)
T 3h7f_A 247 HKTL--GGGRSGLIVG-KQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIA--ATPEFADRQRRTLSGARIIADRLMAP 321 (447)
T ss_dssp SGGG--CCCSCEEEEE-CGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred CcCC--CCCCeEEEEE-CHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988 4678899998 778888776653332 22233344444433221 12234677788889999999999887
Q ss_pred -----CCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc----CCCCcCCCCCCeEEEEecC-----C
Q 019899 250 -----GIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT----PGSACHCIEPGWFRCCFTS-----L 314 (334)
Q Consensus 250 -----g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~~~~~~~iRi~~~~-----~ 314 (334)
|+++.. +..++++|+++..... + .+.+..+++++||.+. |+...++..++++|+++.. .
T Consensus 322 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~ 395 (447)
T 3h7f_A 322 DVAKAGVSVVSGGTDVHLVLVDLRDSPL-----D-GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGF 395 (447)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECTTSSC-----C-HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTC
T ss_pred cccCCCeEEecCCCCCCEEEEEcCCCCC-----C-HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCC
Confidence 888764 3456677888754311 1 3455556787899998 5532333346789999753 5
Q ss_pred CcccHHHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVAET 332 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~ 332 (334)
++++++++++.|.+++++
T Consensus 396 ~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 396 GDTEFTEVADIIATALAT 413 (447)
T ss_dssp CHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 789999999999998864
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=212.31 Aligned_cols=280 Identities=13% Similarity=0.087 Sum_probs=192.2
Q ss_pred hhhhhcCCCCCC-CCcEEE-ecCcHHHHHHHHHHhcCCCCeEEecCCCCCCh-hhhhhhcc--CcEEEEEeCCCCCCccc
Q 019899 5 MSQVLGQAVSFD-PSQIVL-TAGATPAVEILCFCLADHGNALLVPSPYYPGF-DRDIRFRT--GVELIPVHCRSTDNFAF 79 (334)
Q Consensus 5 ~~~~~~~~~~~~-~~~i~~-~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~-~~~~~~~~--g~~v~~v~~~~~~~~~~ 79 (334)
+++.+++.++++ +++|++ |+|+++++.+++.+++++| .+++..+.|... ..... .. |.+++.++++ +++..
T Consensus 83 ~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~-~~~~g~~~~~v~~~--~g~~~ 158 (398)
T 2fyf_A 83 VRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVS-KNPFVGEPIIITSD--PGSAP 158 (398)
T ss_dssp HHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHH-HCTTSCCCEEEECC--TTCCC
T ss_pred HHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHH-HhCCCCceEEEecC--CCCCC
Confidence 334444445555 468998 9999999999999998887 233333333211 11233 44 7888888874 33333
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
+.+ ++ .++++|++++|+||||.++|.+++.++ +|++||+|++|+.+... ..+
T Consensus 159 ~~~-----i~------~~~~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~----~~~------- 210 (398)
T 2fyf_A 159 EPQ-----TD------PSVDVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP----VDI------- 210 (398)
T ss_dssp CCC-----CC------TTCSEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC----CCG-------
T ss_pred Ccc-----cc------CCCCEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc----cCc-------
Confidence 321 22 278999999999999999995555443 89999999999864321 111
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-----------------------hcccCCChHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-----------------------TRFCSISAPTQRLLIS 216 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~ 216 (334)
.+.++++.|+||++|++| ++||+++ ++++++.++.. ...++.+...+.++..
T Consensus 211 ---~~~di~~~s~sK~~~~~g-g~g~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~ 285 (398)
T 2fyf_A 211 ---AETDAYYFAPQKNFASDG-GLWLAIM-SPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAE 285 (398)
T ss_dssp ---GGCSEEEECTTSTTCSCS-SEEEEEE-CHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHH
T ss_pred ---ccCcEEEEecCcccCCCC-ceEEEEE-CHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHH
Confidence 123478889999998665 6999998 78887776431 1123455566666666
Q ss_pred hhCChHHHHHH--HHHHHHHHHHHHHHHHHHHHhC-CCcccC--C--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhc
Q 019899 217 MLSDTKFIQEY--LETNKRRIKKLYDSFVAGLKQL-GIRCSE--S--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIA 289 (334)
Q Consensus 217 ~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~-g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (334)
+++. +.+. +.+.+++++++++++.+.|+++ |+++.. + .+++++|+++|... +..++.+.|.+ +
T Consensus 286 al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~-~ 355 (398)
T 2fyf_A 286 QIDW---LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV------DAGTVAKILRA-N 355 (398)
T ss_dssp HHHH---HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS------CHHHHHHHHHH-T
T ss_pred HHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC------CHHHHHHHHHH-C
Confidence 6542 2222 5778888999999999999988 777663 3 34558888887532 34678888555 6
Q ss_pred CeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 290 KINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 290 gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
||.+.+|.. ...++++|++++. .+++|+++++++|+++++++
T Consensus 356 gI~v~~g~~--~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~~ 398 (398)
T 2fyf_A 356 GIVDTEPYR--KLGRNQLRVAMFPAVEPDDVSALTECVDWVVERL 398 (398)
T ss_dssp TCBCCSCCT--TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHTC
T ss_pred CcEEecCcc--cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHhC
Confidence 999988732 1235789999985 59999999999999998753
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=207.38 Aligned_cols=286 Identities=14% Similarity=0.150 Sum_probs=198.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.++. +++++++|+++++..++.++ .++||+|+++.|+|+++...++ ..|.+++.++++ +++.+|+++
T Consensus 43 l~~~la~~~~~--~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-~~g~~~~~~~~~--~~~~~d~~~ 117 (374)
T 3uwc_A 43 FEKRFAALHNA--PHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIV-QAGATPVLVDSE--NGYVIDPEK 117 (374)
T ss_dssp HHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-HTTCEEEEECBC--TTSSBCGGG
T ss_pred HHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-HcCCEEEEEecC--CCCCcCHHH
Confidence 34444444443 38999999999999999999 9999999999999999999988 899999999984 567889999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (334)
+++++++ ++++++ |+||||.+.+ +++|.++|+++|+++|+|++|+.+. +.+. ...
T Consensus 118 l~~~~~~------~~~~v~---~~n~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~------~~~------ 173 (374)
T 3uwc_A 118 IEAAITD------KTKAIM---PVHYTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDK------FVG------ 173 (374)
T ss_dssp TGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE------ETT------
T ss_pred HHHhCCC------CceEEE---EeCCcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCe------ecc------
Confidence 9998875 778666 8899999998 9999999999999999999998643 2111 111
Q ss_pred CCcEEEEeccc--ccCCCCCceEEEEeecCHHHHHHHHHhhccc--------------CCChHHHHHHHHhhCChHHHHH
Q 019899 163 KDRVHIIYGLS--KDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--------------SISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 163 ~~~~~~~~s~s--K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
...++++.|+| |.++.+|. .|+++++++++.+.++...... ..+..........+ +
T Consensus 174 ~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~---~---- 245 (374)
T 3uwc_A 174 SWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM---N---- 245 (374)
T ss_dssp SSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG---G----
T ss_pred ccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH---H----
Confidence 11356777866 99974465 8888887888888877654211 11222222211111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC---
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQLG--IRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH--- 300 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--- 300 (334)
.+.+..++.+++.+++.+.|++.+ +++.. +.++...|..++-.. .+..++... +.++||.+.++....
T Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-L~~~gi~v~~~~~~~~~~ 319 (374)
T 3uwc_A 246 QLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-----KYRDQLFQY-LKDNGIEVKIHYPIAMHL 319 (374)
T ss_dssp GHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE-----TTHHHHHHH-HHHTTBCCBCSCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc-----CCHHHHHHH-HHHCCCccccCCCCcccc
Confidence 124455666677788888888874 55542 222222222211110 124567777 555799998875110
Q ss_pred -C-------C----------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 301 -C-------I----------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 301 -~-------~----------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+ . ..+.+|++++. .+++|++++++.|++++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 320 QPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp SGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred ChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 0 0 01579999885 69999999999999999764
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=204.53 Aligned_cols=262 Identities=18% Similarity=0.169 Sum_probs=182.8
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh----hhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI----RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+++++++|+++|+..++.+++++||+|+++.|+|++....+ + ..|.+++.++. |++++++++++
T Consensus 72 ~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~--------~~~~l~~~i~~--- 139 (412)
T 2cb1_A 72 LEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLS-LMGVTVRYVDP--------EPEAVREALSA--- 139 (412)
T ss_dssp SEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTT-TTTCEEEEECS--------SHHHHHHHCCT---
T ss_pred CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHH-HcCCEEEEECC--------CHHHHHHHhcc---
Confidence 48999999999999999999999999999999998766653 3 57999999985 38888888875
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+.+.. .+. . .+.++++.|+|
T Consensus 140 ---~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~~----~-----~~~di~~~S~~ 201 (412)
T 2cb1_A 140 ---KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGAAGALC---RPL----A-----WGAHVVVESLT 201 (412)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGTTTTSC---CGG----G-----GTCSEEEEETT
T ss_pred ---CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCccccccC---Ccc----c-----cCCeEEEECCc
Confidence 7899999999999999998 9999999999999999999998752211 111 1 46778999999
Q ss_pred ccCCCCCceEEEEeecC-H--------------------------HHHHHHHHhh-ccc--CCChHHHHHHHHhhCChHH
Q 019899 174 KDLSLPGFRTGVIYSYN-E--------------------------SVLAAAKKLT-RFC--SISAPTQRLLISMLSDTKF 223 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~-~--------------------------~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~ 223 (334)
|+++.+|.|+|++++.+ . ++.+.++... ... ..++.........++.
T Consensus 202 K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~--- 278 (412)
T 2cb1_A 202 KWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET--- 278 (412)
T ss_dssp TTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG---
T ss_pred ccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch---
Confidence 99987999999988644 2 3444554432 212 2233333333323322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CC----------------CceeEEeeecCCcCCCCChhhHHHHHHHH
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQL-GIRCS-ES----------------SAGLYCWADMSGLIPSYSEKGELELWDKL 285 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (334)
+ ..+.++..++.+++.+.|.+. ++... .| ..+.++.+.+ . + .+....+
T Consensus 279 l----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~--~-------~~~~~~~ 344 (412)
T 2cb1_A 279 V----ALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G--D-------LERASRF 344 (412)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S--S-------HHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C--C-------HHHHHHH
Confidence 1 233444567788888888876 66533 11 1233455666 3 1 2344455
Q ss_pred HHhcCeEEcCCC---------CcCCC---------------CCCeEEEEecC-CCcccHHHHHHHHH
Q 019899 286 LNIAKINVTPGS---------ACHCI---------------EPGWFRCCFTS-LTHEDIPLVIERIQ 327 (334)
Q Consensus 286 l~~~gi~v~~g~---------~~~~~---------------~~~~iRi~~~~-~~~~~l~~~l~~l~ 327 (334)
+++.||.+ .++ .+... .++.+|+|++. .++++++.+.+.|+
T Consensus 345 l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 345 LGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp HHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 77789998 764 22110 15789999994 35666666666664
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=207.86 Aligned_cols=266 Identities=15% Similarity=0.145 Sum_probs=184.7
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh----hhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR----DIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+..++++++++|+..++.+++++||+|+++.|+|+++.. .+. ..|.+++.++.. |++++++++++
T Consensus 98 ~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~-~~G~~~~~v~~~-------d~~~l~~ai~~--- 166 (430)
T 3ri6_A 98 LGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLP-SFGIEVRFVDVM-------DSLAVEHACDE--- 166 (430)
T ss_dssp SEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHH-HTTCEEEEECTT-------CHHHHHHHCCT---
T ss_pred CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHH-HcCCEEEEeCCC-------CHHHHHHhhCC---
Confidence 446777788899999999999999999999999998887 455 689999999862 78999999876
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+...+ ... .. .+.++++.|+|
T Consensus 167 ---~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~-----~~~---~~-----~g~div~~S~s 227 (430)
T 3ri6_A 167 ---TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYL-----LEA---KR-----LGVDIEVLSST 227 (430)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTT-----CCG---GG-----GTCSEEEEECC
T ss_pred ---CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-----CCh---HH-----cCCEEEEECCc
Confidence 8999999999999999999 88999999999999999999975332 111 11 45678999999
Q ss_pred ccCCCCCceEEEEee--cCHHH------------------HHHHHH-hhcccC--CChHHHHHHHHhhCChHHHHHHHHH
Q 019899 174 KDLSLPGFRTGVIYS--YNESV------------------LAAAKK-LTRFCS--ISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 174 K~~~~~g~r~g~i~~--~~~~~------------------~~~~~~-~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
|.++.+|..+|.+++ .+..+ ++.++. ....++ .++..... .+.. .+.+..
T Consensus 228 K~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l---~l~~----l~~l~~ 300 (430)
T 3ri6_A 228 KFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYL---QSLG----LETMAL 300 (430)
T ss_dssp CEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHH---HHHH----HHHHHH
T ss_pred ccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHH---HHhh----hhhHHH
Confidence 999766654554444 23111 222221 111222 23222221 1111 222344
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCcc-cCCC----------------ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE
Q 019899 231 NKRRIKKLYDSFVAGLKQL-GIRC-SESS----------------AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~-g~~~-~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
+.++..+++..+.+.|++. +++. ..|. +|+++|++++.. .+...+.+. ++..++.
T Consensus 301 r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~------~~~~~~~~~-l~~~~~~ 373 (430)
T 3ri6_A 301 RIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK------EASYRFMDA-LKLIRRA 373 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH------HHHHHHHHH-CSSSEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH------HHHHHHHHh-CCcceec
Confidence 5566778888899998876 4442 2222 555888998731 234455555 4546667
Q ss_pred EcCCCCcCC---------------------CCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 293 VTPGSACHC---------------------IEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 293 v~~g~~~~~---------------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
+.+|..+.. ..++.+|+|++ .|+.+++++.|++++
T Consensus 374 ~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG---~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 374 TNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG---IEEIEDLKEDILQAL 429 (430)
T ss_dssp SCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC---SSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHhh
Confidence 777775542 13578999998 788888888888876
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=212.00 Aligned_cols=287 Identities=17% Similarity=0.160 Sum_probs=199.5
Q ss_pred CcEEEecCcHHHHHHHHHHhcCC---------CC--------e--EEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc
Q 019899 18 SQIVLTAGATPAVEILCFCLADH---------GN--------A--LLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~---------gd--------~--vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 78 (334)
.++++|+|+|+|+..++.++..+ || + |+++.++|+++...++ ..|.+++.+|+ ++++.
T Consensus 140 ~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~-~~G~~v~~v~~--d~~~~ 216 (486)
T 1js3_A 140 GGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGL-IGGVKLKAIPS--DGKFA 216 (486)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHH-HHTCEEEEECC--CTTSC
T ss_pred CCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHH-hCCCceEEeec--CCCCC
Confidence 46899999999999888775321 42 3 7889999999999998 88999999998 35778
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh-hhhhh
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM-AEILE 157 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~-~~~~~ 157 (334)
+|+++|+++|++....+..+.+|++++|+||||.+.+ +++|.++|++||+++++|++|+.+.+..+..... ..+
T Consensus 217 ~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~-- 291 (486)
T 1js3_A 217 MRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV-- 291 (486)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTG--
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCc--
Confidence 9999999999875444545678999999999999988 9999999999999999999998765432222221 111
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHH-HHHHHHhhcc----------------c------CCChHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV-LAAAKKLTRF----------------C------SISAPTQRLL 214 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~-~~~~~~~~~~----------------~------~~~~~~~~~~ 214 (334)
.+.+.++.++||+++.+ .++|+++++++.. .+.+.....+ + ....+.+.++
T Consensus 292 -----~~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~a 365 (486)
T 1js3_A 292 -----EFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFV 365 (486)
T ss_dssp -----GGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHH
T ss_pred -----cccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHH
Confidence 12235567899999754 7899999977764 3333110000 0 0112333333
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE
Q 019899 215 ISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
...+ ..+.+.++.++..++++++.+.|++. ++++.. +..++++ +.++.. .....++...|.+ .|+.
T Consensus 366 l~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~-f~~~~~-----~~~~~~l~~~L~~-~g~~ 433 (486)
T 1js3_A 366 FRMY-----GVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVC-FRLKGS-----DGLNEALLERINS-ARKI 433 (486)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEE-EEESSC-----HHHHHHHHHHHHH-HTSC
T ss_pred HHHH-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEE-EEecCh-----HHHHHHHHHHHHh-cCCE
Confidence 3322 13456777888889999999999987 788764 5555554 455421 1123577788655 5654
Q ss_pred EcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 293 VTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 293 v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
+.++..++ ..+++|++++. .+++++++++++|++++++
T Consensus 434 ~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 434 HLVPCRLR--GQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp BCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEC--CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33322232 25689999753 4788999999999998765
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=209.24 Aligned_cols=293 Identities=11% Similarity=0.045 Sum_probs=186.6
Q ss_pred CCcEEEecCcHHHHHHHHHHhcC--CCCeEEecCCCCCChhhhhhhc-------------cCcEEEEEeCCCC-------
Q 019899 17 PSQIVLTAGATPAVEILCFCLAD--HGNALLVPSPYYPGFDRDIRFR-------------TGVELIPVHCRST------- 74 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~-------------~g~~v~~v~~~~~------- 74 (334)
.+++++++|+++|+..++..+.. .+++|++.+++|+++....... ....+..++.+..
T Consensus 122 ~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 201 (451)
T 3oks_A 122 DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFG 201 (451)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGC
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccc
Confidence 57899999999999999977653 5589999999998765443201 1124566665311
Q ss_pred -CCcc---ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCc-cc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCC
Q 019899 75 -DNFA---FSITALDQAFNQARKRGVKVRGILICNPANPV-GN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEE 148 (334)
Q Consensus 75 -~~~~---~~~~~l~~~l~~~~~~~~~~~~i~~~~p~npt-G~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~ 148 (334)
+... .+++.+++.+++.. +.+..+++++.|.|++ |. ..+.+.+++|.++|++||+++|+||+|.++.+.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~ 279 (451)
T 3oks_A 202 KELATDGELAAKRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM 279 (451)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cccchhhHHHHHHHHHHHHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccc
Confidence 0011 13455555555321 1133446666775544 44 346667999999999999999999999987655542
Q ss_pred cchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHH
Q 019899 149 FVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
. ..... +....+.|+||+++ .|+|+||+++ ++++++.+... ...++.|++.+.++.++++..+ +
T Consensus 280 ~-~~~~~--------~~~pdi~t~sK~l~-~G~~iG~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~- 345 (451)
T 3oks_A 280 F-ACEHE--------GIDPDLIVTAKGIA-GGLPLSAVTG-RAEIMDSPHVSGLGGTYGGNPIACAAALATIETIE--S- 345 (451)
T ss_dssp S-GGGGG--------TCCCSEEEECGGGG-TTSSCEEEEE-EHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHH--H-
T ss_pred h-hhhhc--------CCCCCeeeehhhhh-CCcceEEEEE-CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHh--h-
Confidence 2 11111 11112338999998 5999999998 88888877643 4456788999988888875422 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----CCCcccCCCceeEEeeecCCcCC-CCChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQ----LGIRCSESSAGLYCWADMSGLIP-SYSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
....++++++.+++.+.|++ ++.....+..|.++|+++..... ........++...+++ +||.+.|+..+
T Consensus 346 --~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~-- 420 (451)
T 3oks_A 346 --EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY-- 420 (451)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT--
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC--
Confidence 12333344444444444443 33222222335567777743111 1122345567777554 79999987644
Q ss_pred CCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 302 IEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 ~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++|++++. .+++++++++++|++++++
T Consensus 421 --~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 421 --GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp --SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 3689998775 5999999999999999864
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=211.66 Aligned_cols=275 Identities=15% Similarity=0.193 Sum_probs=192.6
Q ss_pred CcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+++++++|+++++..++.++ .++||+|+++.|+|+++...+. ..|.+++.+++++ +++.+|++++++++++
T Consensus 72 ~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~------ 143 (391)
T 3dr4_A 72 KHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVT-YCGATPVLVDNDP-RTFNLDAAKLEALITP------ 143 (391)
T ss_dssp SEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHH-HTTCEEEEECBCT-TTCSBCGGGSGGGCCT------
T ss_pred CcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHH-HCCCEEEEEecCc-cccCcCHHHHHHhcCC------
Confidence 38899999999999999999 8999999999999999999998 8999999999853 4578999999998875
Q ss_pred ceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcEEEEeccc--
Q 019899 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRVHIIYGLS-- 173 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-- 173 (334)
++++|+ ++||||.+.+ +++|.++|+++|+++|+|++|+.+. +.+. .... .+ ++.+.||+
T Consensus 144 ~~~~v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~~~--------~~-di~~~S~s~~ 205 (391)
T 3dr4_A 144 RTKAIM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGK---KSGS--------LG-DCATFSFFGN 205 (391)
T ss_dssp TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTS--------SS-SEEEEECBTT
T ss_pred CceEEE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCe---eecc--------cC-CEEEEECCCC
Confidence 788666 5689999988 8999999999999999999998633 2111 1110 11 25556655
Q ss_pred ccCCCCCceEEEEeecCHHHHHHHHHhhcccC--------------CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRFCS--------------ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
|.++ |.+.|+++++++.+.+.++.....+. .......++..+.. .+.+.+..++.+++.
T Consensus 206 K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~-----~~~~~~~~~~~~~~~ 278 (391)
T 3dr4_A 206 AIIT--TGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ-----LERVDEHLAARERVV 278 (391)
T ss_dssp SSSC--CBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH-----HHTHHHHHHHHHHHH
T ss_pred CcCC--cCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 8775 35689998877888887765542211 11112222222211 122345566677778
Q ss_pred HHHHHHHHhCCCcccCC-------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC---cCCC-------
Q 019899 240 DSFVAGLKQLGIRCSES-------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA---CHCI------- 302 (334)
Q Consensus 240 ~~~~~~l~~~g~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~---~~~~------- 302 (334)
+++.+.|++.++++..+ ...+.+++.++... ..+..++...| .++||.+.++.. +.+.
T Consensus 279 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~L-~~~GI~v~~~~~p~~~~~~~~~~~~~ 353 (391)
T 3dr4_A 279 GWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGL----STTRDQVIKDL-DALGIESRPVFHPMHIMPPYAHLATD 353 (391)
T ss_dssp HHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSC----SSCHHHHHHHH-HHTTCCCEECCCCGGGSGGGGGGCCT
T ss_pred HHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCcc----chhHHHHHHHH-HHCCCceeecCCccccChhhhhcCcC
Confidence 88888888877776544 12223456666421 12346788884 557999988752 1110
Q ss_pred --------CCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 303 --------EPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 303 --------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
....+|+++.. .+++|++++++.|++++
T Consensus 354 ~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 354 DLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp TCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 12468999885 69999999999998764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=200.01 Aligned_cols=282 Identities=13% Similarity=0.152 Sum_probs=193.5
Q ss_pred CcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+++++++|+++++..++.++ .++||+|+++.|+|+++...+. ..|.+++.++++ +++.+|++++++++++. ..
T Consensus 48 ~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~---~~ 121 (394)
T 1o69_A 48 ENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPIC-YLKAKPVFIDCD--ETYNIDVDLLKLAIKEC---EK 121 (394)
T ss_dssp SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH-HTTCEEEEECBC--TTSSBCHHHHHHHHHHC---SS
T ss_pred CcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-HcCCEEEEEEeC--CCCCcCHHHHHHHHhcc---cC
Confidence 78999999999999999999 8999999999999999999998 899999999984 56789999999999751 11
Q ss_pred ceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccc-ccccCCCCcchhhhhhhccccCCCcEEEEeccccc
Q 019899 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYG-GSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKD 175 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~ 175 (334)
++++|++++ |+|...+ +++|.++|+++|+++|+|++|+ ++.+.+... ..+ .+.++...|.+|.
T Consensus 122 ~~~~v~~~~---~~G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~-------~~~~~~s~s~~K~ 185 (394)
T 1o69_A 122 KPKALILTH---LYGNAAK---MDEIVEICKENDIVLIEDAAEALGSFYKNKAL---GTF-------GEFGVYSYNGNKI 185 (394)
T ss_dssp CCCEEEEEC---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEET---TSS-------SSEEEEECCTTSS
T ss_pred CceEEEEEC---CCCChhh---HHHHHHHHHHcCCEEEEECcCcccceeCCccc---ccc-------cCcEEEEEeCCcc
Confidence 578888884 8998877 9999999999999999999998 444432211 110 2233333344676
Q ss_pred CCCCCceEEEEeecCHHHHHHHHHhhcccC----------------CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCS----------------ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 176 ~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
+ +|.++||++++++++.+.++.....+. .+.....+....+. ++++..+++++++
T Consensus 186 l--~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~-------~l~~~~~~~~~~~ 256 (394)
T 1o69_A 186 I--TTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME-------VLEQRVLKKREIY 256 (394)
T ss_dssp S--CCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT-------THHHHHHHHHHHH
T ss_pred C--CCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 6 456899999966888888876533221 11112111111121 2344567788888
Q ss_pred HHHHHHHHhCCCcccCCC----cee-EEeeecCCcC---------------CCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 240 DSFVAGLKQLGIRCSESS----AGL-YCWADMSGLI---------------PSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 240 ~~~~~~l~~~g~~~~~~~----~g~-~~~~~~~~~~---------------~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
+++.+.|++. +++..+. .++ ++++.++... ......+..++...| +++||.++++..+
T Consensus 257 ~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~~~~ 334 (394)
T 1o69_A 257 EWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDL-KNKQIETRPLWKA 334 (394)
T ss_dssp HHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHH-HHTTCCCBCCCCC
T ss_pred HHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHH-HHcCCcccccCCc
Confidence 9999999887 6554432 233 3556666320 000012455777774 5589999988533
Q ss_pred C---CC-CC--------------CeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 300 H---CI-EP--------------GWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~---~~-~~--------------~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
. +. .. ..+|+.+.. .+++|++++++.|+++++.
T Consensus 335 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 335 MHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp GGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred cccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1 00 00 234554443 6999999999999998754
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=213.03 Aligned_cols=294 Identities=13% Similarity=0.016 Sum_probs=203.5
Q ss_pred CCCC--CCcEE---EecCcHHHHHHHHHHhcCC--------CC-----eEEecCCCCCChhhhhhhccCcEEEEEeCCCC
Q 019899 13 VSFD--PSQIV---LTAGATPAVEILCFCLADH--------GN-----ALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74 (334)
Q Consensus 13 ~~~~--~~~i~---~~~g~~~~~~~~~~~l~~~--------gd-----~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~ 74 (334)
++++ +++++ +|+|+++++..++.++..+ |+ +|+++.++|.++...++ ..|.+++.+|+++
T Consensus 108 ~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~-~~G~~~~~v~~~~- 185 (502)
T 3hbx_A 108 FNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR-YFEVELKEVKLSE- 185 (502)
T ss_dssp TTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH-HTTCEEEEECCBT-
T ss_pred hCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH-HcCceeEEEecCC-
Confidence 4444 55544 4899999999998887554 76 89999999999999998 8999999999843
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc------CcEEEEecccccccc---C
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK------NIHVISDEIYGGSIF---G 145 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~vi~D~~~~~~~~---~ 145 (334)
+++.+|++++++++++ ++++|++++|+||||.+.| +++|.++|+++ |+++++|++|+.+.. .
T Consensus 186 ~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~ 256 (502)
T 3hbx_A 186 GYYVMDPQQAVDMVDE------NTICVAAILGSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLY 256 (502)
T ss_dssp TBCSCCHHHHHHHCCT------TEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHC
T ss_pred CcCcCCHHHHHHHHhh------CCEEEEEecCCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhC
Confidence 4478999999999986 7899999999999999999 88899999998 999999999986541 1
Q ss_pred CCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHH-HHHHhhcc-----------cCCChHHHHH
Q 019899 146 NEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLA-AAKKLTRF-----------CSISAPTQRL 213 (334)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~ 213 (334)
+.....+. . .+.+.+..|.+|+++ .+.++|+++.++++.+. .+.....+ ++.+.....+
T Consensus 257 ~~~~~~~~-~-------~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a 327 (502)
T 3hbx_A 257 PELEWDFR-L-------PLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIA 327 (502)
T ss_dssp TTCCCSTT-S-------TTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHH
T ss_pred cccccccC-C-------CCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHH
Confidence 11111110 0 456677789999875 66678998886665432 22111111 1111112222
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCC-CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IRCSES-SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI 291 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi 291 (334)
+...+... ..+.+.++.++..++++++.+.|++++ +++..+ ....++.++++.... .+..++... |.++||
T Consensus 328 ~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~----~~~~~l~~~-L~~~Gi 400 (502)
T 3hbx_A 328 QYYQLIRL--GHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSC----HTEFEISDM-LRRYGW 400 (502)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSS----CCHHHHHHH-HHTTTC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCc----CCHHHHHHH-HHhCCc
Confidence 22222211 133346777888889999999999985 887755 334455567764211 123477777 555899
Q ss_pred EEcCCCCc-CCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 292 NVTPGSAC-HCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 292 ~v~~g~~~-~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+...... ......++|++++. .++++++.+++.|++++++.
T Consensus 401 ~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l 444 (502)
T 3hbx_A 401 IVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMREL 444 (502)
T ss_dssp BCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 87432211 11124689999986 69999999999999988653
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=211.05 Aligned_cols=280 Identities=17% Similarity=0.179 Sum_probs=189.0
Q ss_pred CCCcEEEecCcHHHHHHHHHH---hcCCCCeEEecCCCCCChhhhhhhc-------------cCc------EEEEEeCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFC---LADHGNALLVPSPYYPGFDRDIRFR-------------TGV------ELIPVHCRS 73 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~---l~~~gd~vl~~~p~~~~~~~~~~~~-------------~g~------~v~~v~~~~ 73 (334)
+.++|++++|+++|+..++.. +. ++++|++.+|+|+++....... .|. +++.++.
T Consensus 111 ~~~~v~~~~sgseA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-- 187 (434)
T 2epj_A 111 RGGMIRFVNSGTEATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-- 187 (434)
T ss_dssp TTCEEEEESSHHHHHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET--
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC--
Confidence 468999999999999999987 44 5578888899998755432101 132 2445552
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
.|+++|++++++. +.++++| +++| +|+||.+. +.+.+++|.++|++||+++|+||+|.++ ..+... .
T Consensus 188 -----~d~~~le~~l~~~---~~~~~~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~-~ 256 (434)
T 2epj_A 188 -----NDVEALERVFAEY---GDRIAGV-IVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEG-A 256 (434)
T ss_dssp -----TCHHHHHHHHHHH---GGGEEEE-EECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTH-H
T ss_pred -----CCHHHHHHHHHhC---CCCEEEE-EEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcch-h
Confidence 3789999999753 1256654 5555 67899876 6899999999999999999999999976 323211 1
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-----hcccCCChHHHHHHHHhhCChHHHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
. +..+ . ... +.|+||.++ .|+|+||+++ ++++++.+... ...++.|++.+.++..+++..+ +
T Consensus 257 ~-~~~~---~-~~d---i~s~sK~l~-~G~~~G~v~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~---~ 323 (434)
T 2epj_A 257 Q-GYFN---I-EGD---IIVLGKIIG-GGFPVGAVAG-SREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALE---E 323 (434)
T ss_dssp H-HHHT---C-CCS---EEEEEGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH---H
T ss_pred h-HHhC---C-CCC---eeeecchhc-CCcceeeeee-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH---h
Confidence 1 1111 1 111 348999998 5999999998 78887777541 2345678888877777764322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCc-CCC------CChhhHHHHHHHHHHhcCeEEcC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGL-IPS------YSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~-~~~------~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
.+..++++++.+++.+.|+++ ++....+..|.++|++++.. ... .......++...|+ ++||.+.|
T Consensus 324 --~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~ 400 (434)
T 2epj_A 324 --EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAP 400 (434)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCS
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEec
Confidence 234556666667777776653 55332233456778888751 100 01123457788865 58999998
Q ss_pred CCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
+.. .++|+++. .+++++++++++|++++++
T Consensus 401 ~~~------~~~~~~~~-~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 401 SNL------EAVFTGLP-HQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp STT------SCEECCTT-CSHHHHHHHHHHHHHHHHH
T ss_pred cCC------CcEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence 752 34676654 7999999999999998875
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=210.71 Aligned_cols=302 Identities=14% Similarity=0.130 Sum_probs=203.8
Q ss_pred hhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHh----c---------CC------CC-eEEecCCCCCChhhhhhhc
Q 019899 3 GFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCL----A---------DH------GN-ALLVPSPYYPGFDRDIRFR 61 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l----~---------~~------gd-~vl~~~p~~~~~~~~~~~~ 61 (334)
+|+.+.++ +++ +++++|+|+|+++..++.++ + .+ |+ .|+++.+.|.++...+. .
T Consensus 147 ~~la~~~g----~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~-~ 221 (497)
T 2qma_A 147 NWLCDKYD----LSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS-W 221 (497)
T ss_dssp HHHHHHTT----CCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHH-H
T ss_pred HHHHHHhC----CCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHH-H
Confidence 45555544 444 78999999999999988873 2 12 46 79999999999998888 7
Q ss_pred cCc---EEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecc
Q 019899 62 TGV---ELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEI 138 (334)
Q Consensus 62 ~g~---~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~ 138 (334)
.|. +++.+|++ +++.+|+++|++++++....+.++.+|++++++||||.+.+ +++|.++|++||+++++|++
T Consensus 222 ~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a 296 (497)
T 2qma_A 222 MGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGA 296 (497)
T ss_dssp TTSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEET
T ss_pred cCCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehh
Confidence 665 79999983 56789999999999875444434558899999999999988 99999999999999999999
Q ss_pred ccccccCCCCcch-hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc-C-----CC----
Q 019899 139 YGGSIFGNEEFVS-MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC-S-----IS---- 207 (334)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~-~-----~~---- 207 (334)
|+.+.+... ... +..+ ...++++.|+||+++.+ .++|+++++++..++.+.....+. . .+
T Consensus 297 ~~~~~~~~~-~~~~~~gi-------~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 367 (497)
T 2qma_A 297 YGGALILSS-HKSRLKGV-------ERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDK 367 (497)
T ss_dssp TGGGGGGST-TGGGGTTG-------GGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC------------------
T ss_pred hhHHHHhCc-chHhhcCc-------ccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCchhcCCccccCCCcccc
Confidence 998665332 111 1111 12346677999998744 689999986666443332111111 0 00
Q ss_pred ---------hHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCceeEEeeecCCcCCCCChh
Q 019899 208 ---------APTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCS-ESSAGLYCWADMSGLIPSYSEK 276 (334)
Q Consensus 208 ---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~ 276 (334)
.+.+.+....+. .+.+.++.+++.++++++.+.|++. ++++. .+..+ ++++++.+.... ...
T Consensus 368 ~~~~~r~~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-~v~f~~~~~~~~-~~~ 440 (497)
T 2qma_A 368 SIATTKRFDALKVFMTMQNVG-----PKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLS-TVLFRATHETAD-LDE 440 (497)
T ss_dssp --CCSCCCTHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSS-EEEEEECCSSSC-HHH
T ss_pred CCCCCCchhHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCce-EEEEEEcCCccC-HHH
Confidence 111222222221 2345667788889999999999986 78875 44445 455566432110 001
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEe-cC-CCcccHHHHHHHHHHHHHHc
Q 019899 277 GELELWDKLLNIAKINVTPGSACHCIEPGWFRCCF-TS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 277 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~-~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
...++...+. +.|+.+.++..+. ..+++|+++ .. .++++++++++.|+++++++
T Consensus 441 l~~~l~~~l~-~~G~~~~~~~~~~--g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 441 LNKALRLEAL-TRGIAVLGETIVD--GKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHH-HHTSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-hCCCEEEEeeEEC--CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1234556644 4788876544332 246899998 43 68999999999999998764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=207.01 Aligned_cols=300 Identities=16% Similarity=0.112 Sum_probs=199.2
Q ss_pred hhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhhhhhccC------------cEE
Q 019899 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRDIRFRTG------------VEL 66 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g------------~~v 66 (334)
+.+.+..+.+.++|++++|+++|+..++..+. .++++|++.+|+|.++........| ..+
T Consensus 104 ~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (476)
T 3i5t_A 104 EKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRI 183 (476)
T ss_dssp HHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTE
T ss_pred HHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCc
Confidence 33444455567899999999999999998875 3467999999999877644331111 123
Q ss_pred EEEeCCCCCC-cccc--------HHHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEe
Q 019899 67 IPVHCRSTDN-FAFS--------ITALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISD 136 (334)
Q Consensus 67 ~~v~~~~~~~-~~~~--------~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D 136 (334)
..++.+.... +..+ +++|++++++.. ..++++|++..++|++|. +.+.+.+++|.++|++||+++|+|
T Consensus 184 ~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~D 261 (476)
T 3i5t_A 184 SFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISD 261 (476)
T ss_dssp EEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred EEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3333221111 1222 778888887421 125676777766888886 778889999999999999999999
Q ss_pred ccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh---------hcccCC
Q 019899 137 EIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL---------TRFCSI 206 (334)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~---------~~~~~~ 206 (334)
|+|.++.+.|..+ ...... +. ... +.++||+++ .| +|+|++++ ++++++.+... ...++.
T Consensus 262 Ev~~g~gr~G~~~-~~~~~~---~v-~pd---i~t~sK~l~-~G~~plg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~ 331 (476)
T 3i5t_A 262 EVVTGFGRCGEWF-ASEKVF---GV-VPD---IITFAKGVT-SGYVPLGGLAI-SEAVLARISGENAKGSWFTNGYTYSN 331 (476)
T ss_dssp CTTTTTTTTSSSC-HHHHTT---CC-CCS---EEEECGGGG-TTSSCCEEEEE-CHHHHHTTSGGGCTTCEECCCCTTTT
T ss_pred ecccCCccccCce-eeeccc---CC-Ccc---hhhhhhhhc-CCCcCeEEEEE-CHHHHHHHhcCCcccccccccCCCCc
Confidence 9999876655422 221011 11 112 236889998 68 99999999 88998888643 245678
Q ss_pred ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C---cccCCCceeEEeeecCCcCCCCCh-----hh
Q 019899 207 SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-I---RCSESSAGLYCWADMSGLIPSYSE-----KG 277 (334)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~---~~~~~~~g~~~~~~~~~~~~~~~~-----~~ 277 (334)
|++++.++.++++..+ + +...++++++.+++.+.|+++. . ....+ .|.++++++......... ..
T Consensus 332 np~a~aAa~aaL~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~-~G~~~~i~~~~~~~~~~~~~~~~~~ 405 (476)
T 3i5t_A 332 QPVACAAALANIELME---R--EGIVDQAREMADYFAAALASLRDLPGVAETRS-VGLVGCVQCLLDPTRADGTAEDKAF 405 (476)
T ss_dssp CHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE-ETTEEEEEECCC-----CCHHHHHH
T ss_pred CHHHHHHHHHHHHHHH---h--HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCceeEEEEecCccccccccchhHH
Confidence 8888888888875422 1 3455666777777777777542 2 22233 344566777643211100 02
Q ss_pred HHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 278 ELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 278 ~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
...+...+++ +||.+.|. .+++|++++. .+++++++++++|++++++
T Consensus 406 ~~~~~~~l~~-~Gv~v~~~-------g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 406 TLKIDERCFE-LGLIVRPL-------GDLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp HHHHHHHHHH-TTEECEEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 4467777555 79999872 1689999663 6999999999999999865
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=210.87 Aligned_cols=298 Identities=13% Similarity=0.096 Sum_probs=195.5
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHHhcC--------CCCeEEecCCCCCChhhhhhhccCc-----------EEEE
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFCLAD--------HGNALLVPSPYYPGFDRDIRFRTGV-----------ELIP 68 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~~g~-----------~v~~ 68 (334)
.+.+..+.+.++|++++|+++|+..++..+.. ++++|++.+|+|.++........+. .+..
T Consensus 107 ~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~ 186 (472)
T 3hmu_A 107 KLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHH 186 (472)
T ss_dssp HHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEE
T ss_pred HHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEE
Confidence 33333455678999999999999999998864 5689999999998876544312221 3445
Q ss_pred EeCCC--C-CCcccc--------HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEe
Q 019899 69 VHCRS--T-DNFAFS--------ITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISD 136 (334)
Q Consensus 69 v~~~~--~-~~~~~~--------~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D 136 (334)
++.+. . +.+ .+ +++|++++++... .++.+|++..+++++|.+. +.+.+++|.++|++||+++|+|
T Consensus 187 v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~--~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~D 263 (472)
T 3hmu_A 187 INQPNWWAEGGD-MDPEEFGLARARELEEAILELGE--NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIAD 263 (472)
T ss_dssp ECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred eCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCC--CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 55321 0 111 23 7888888874310 2566555555577888766 7888999999999999999999
Q ss_pred ccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH----hhcccCCChHHHH
Q 019899 137 EIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK----LTRFCSISAPTQR 212 (334)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~----~~~~~~~~~~~~~ 212 (334)
|+|.+|...|..+ ..... + . ... +.++||+++..|+|+|++++ ++++.+.+.. ....++.|++++.
T Consensus 264 Ev~~gfgr~G~~~-a~~~~-~---v-~pd---i~t~sK~l~gg~~plG~v~~-~~~i~~~~~~~~~~~~~t~~~np~a~a 333 (472)
T 3hmu_A 264 EVICGFGRTGNWF-GTQTM-G---I-RPH---IMTIAKGLSSGYAPIGGSIV-CDEVAHVIGKDEFNHGYTYSGHPVAAA 333 (472)
T ss_dssp CTTTTTTTTSSSC-HHHHH-T---C-CCS---EEEECGGGTTTSSCCEEEEE-EHHHHHHHTTSCBCCCCTTTTCHHHHH
T ss_pred ccccCCcccCccc-hhHHh-C---C-CCc---eeeechhhhcCCcceEEEEE-CHHHHHhcccCCccccCCCCCCHHHHH
Confidence 9999876655422 11111 1 1 122 23688999844489999999 8899888831 1235678889988
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHH-HHHHHHHHHHHhC---C-CcccCCCceeEEeeecCCcCCCCC------hhhHHHH
Q 019899 213 LLISMLSDTKFIQEYLETNKRRIK-KLYDSFVAGLKQL---G-IRCSESSAGLYCWADMSGLIPSYS------EKGELEL 281 (334)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~---g-~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~ 281 (334)
++.++++..+ + +...++++ ++.+++.+.|+++ + +....+. |.++++++........ .....++
T Consensus 334 Aa~aaL~~~~---~--~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 407 (472)
T 3hmu_A 334 VALENLRILE---E--ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIV-GMMASIALTPNKASRAKFASEPGTIGYIC 407 (472)
T ss_dssp HHHHHHHHHH---H--TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEE-TTEEEEEECSCGGGTCCBSSCTTHHHHHH
T ss_pred HHHHHHHHHH---H--hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec-CceEEEEEecCccccccccchhHHHHHHH
Confidence 8888775322 1 23444555 5666666666553 1 2222333 4455566653211000 1124567
Q ss_pred HHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 282 WDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 282 ~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
...|++ +||.+.|+. +++|++++. .+++++++++++|++++++
T Consensus 408 ~~~l~~-~Gv~v~~~g-------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 408 RERCFA-NNLIMRHVG-------DRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp HHHHHH-TTBCCEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-CCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 777555 799998752 689999664 6999999999999999865
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=206.48 Aligned_cols=303 Identities=14% Similarity=0.118 Sum_probs=212.6
Q ss_pred hhhhhhhhcCCCCCCC--------CcEEEecCcHHHHHHHHHHhcC-------------------CCCeEEecCCCCCCh
Q 019899 2 AGFMSQVLGQAVSFDP--------SQIVLTAGATPAVEILCFCLAD-------------------HGNALLVPSPYYPGF 54 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~--------~~i~~~~g~~~~~~~~~~~l~~-------------------~gd~vl~~~p~~~~~ 54 (334)
++|+.+.++ ++... ...++|+|+|+++..++.+..+ +++.|+++.++|.++
T Consensus 124 ~~~l~~l~g--~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 201 (481)
T 4e1o_A 124 MDWLAKMLG--LPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSV 201 (481)
T ss_dssp HHHHHHHHT--CCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHH
T ss_pred HHHHHHHhC--CChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHH
Confidence 467777766 33221 3678999999999888876532 567999999999999
Q ss_pred hhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEE
Q 019899 55 DRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134 (334)
Q Consensus 55 ~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi 134 (334)
...+. ..|.+++.+|+ ++++.+|+++|+++|++....+..+.+|+++.++|++|.+.| +++|+++|++||++++
T Consensus 202 ~~~~~-~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~---l~~I~~la~~~~~~lh 275 (481)
T 4e1o_A 202 EKAGL-ISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC---LSELGPICAREGLWLH 275 (481)
T ss_dssp HHHHH-HHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEE
T ss_pred HHHHH-hCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---HHHHHHHHHHcCCeEE
Confidence 99988 88999999998 466789999999999986666656888999999999999988 9999999999999999
Q ss_pred EeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-ccc---------
Q 019899 135 SDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-RFC--------- 204 (334)
Q Consensus 135 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-~~~--------- 204 (334)
+|++|+.+.+..........- . ...+.+..+++|+++.| ...|+++.+++.......... .+.
T Consensus 276 vDaA~g~~~~~~~~~~~~~~g-----i-~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~ 348 (481)
T 4e1o_A 276 IDAAYAGTAFLCPEFRGFLKG-----I-EYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVAT 348 (481)
T ss_dssp EECTTGGGGGGSGGGGGGGTT-----G-GGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSC
T ss_pred eehhhHHHHHhChhhHHHhcC-----c-ccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchhccCcccCCCC
Confidence 999998754322211111100 0 12245667999999744 457787776776543211111 110
Q ss_pred -----C--C----ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCC
Q 019899 205 -----S--I----SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPS 272 (334)
Q Consensus 205 -----~--~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~ 272 (334)
+ . ....+.+...++ ..+.+.++.++..++++++.+.|++. |+++..+....+++++++..
T Consensus 349 ~~~~~~~~~~r~~~~l~~~~al~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~--- 420 (481)
T 4e1o_A 349 DFMHWQIPLSRRFRSVKLWFVIRSF-----GVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP--- 420 (481)
T ss_dssp CGGGGSSSSCCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSC---
T ss_pred CcccccccCCCCccHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCc---
Confidence 0 0 122223222222 13456777888999999999999987 88887665556667777542
Q ss_pred CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 273 YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 273 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
.....++.++|.++..+.+.|+... ...++|+++++ .+++|+++++++|+++.++
T Consensus 421 --~~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 421 --NSLTENVLKEIAKAGRLFLIPATIQ---DKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp --HHHHHHHHHHHHHHCSSBCEEEEET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHhCCeEEEEeeEEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1234678888666433555544332 24689999774 4789999999999998875
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=204.46 Aligned_cols=293 Identities=14% Similarity=0.095 Sum_probs=188.1
Q ss_pred hhhcCCCCCCCCc---EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhh--------hhhhccCcEEE--EEeCCC
Q 019899 7 QVLGQAVSFDPSQ---IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDR--------DIRFRTGVELI--PVHCRS 73 (334)
Q Consensus 7 ~~~~~~~~~~~~~---i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~~g~~v~--~v~~~~ 73 (334)
+++++.++++.+. .++++++++|+..++.+++++||+|+++++.|.++.. .+. ..|..+. .++++
T Consensus 107 ~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~-~~g~~~~~~~~~vd- 184 (490)
T 2a7v_A 107 RRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRIS-ATSIFFESMPYKLN- 184 (490)
T ss_dssp HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC--------------------------------CCBC-
T ss_pred HHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHH-HcCCeEEEEecccc-
Confidence 4444455666653 3455688999999999999999999999999876432 223 4454433 44443
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccc-cccCCCCcchh
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGG-SIFGNEEFVSM 152 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~-~~~~~~~~~~~ 152 (334)
++.+.+|++++++++++. ++++|+++.++||+ ..+ +++|.++|+++|+++++|++|.. +.+.+....++
T Consensus 185 ~~~~~iD~d~le~~l~~~-----~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~ 254 (490)
T 2a7v_A 185 PKTGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF 254 (490)
T ss_dssp TTTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG
T ss_pred cccCCcCHHHHHHHHhhc-----CCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCcCCCCC
Confidence 245689999999999764 78888888888874 556 89999999999999999999753 22323222121
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCH--------------HHHHHHHHhhccc---CCChHHHHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE--------------SVLAAAKKLTRFC---SISAPTQRLLI 215 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~--------------~~~~~~~~~~~~~---~~~~~~~~~~~ 215 (334)
...++++.|+||++ .|.+.|+++++++ ++.+.+++....+ +.+.....+++
T Consensus 255 ----------~~aDiv~~S~hK~l--~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla 322 (490)
T 2a7v_A 255 ----------KHADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVA 322 (490)
T ss_dssp ----------GTCSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHH
T ss_pred ----------CCCCEEEECCcccC--ccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHH
Confidence 12347889999998 3456799998553 3556666543332 23444444444
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 294 (334)
.++... ..+.+.++.+++.++++++.+.|.+.|+++.. ....+++|++++... .++.++... |++.||.+.
T Consensus 323 ~Al~~~--~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g-----~~~~~~~~~-L~~~GI~v~ 394 (490)
T 2a7v_A 323 VALKQA--CTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKG-----LDGARAERV-LELVSITAN 394 (490)
T ss_dssp HHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTT-----CCHHHHHHH-HHHTTEECE
T ss_pred HHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCC-----CCHHHHHHH-HHhCCeEEe
Confidence 444321 12334677888999999999999999998864 345677888886431 123455555 677899998
Q ss_pred CCCCcC---CCCCCeEEEEecC-----CCcccHHHHHHHHHHHHH
Q 019899 295 PGSACH---CIEPGWFRCCFTS-----LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 295 ~g~~~~---~~~~~~iRi~~~~-----~~~~~l~~~l~~l~~~~~ 331 (334)
.+..++ +..++.+|++... .+++|++++++.|.++++
T Consensus 395 ~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 395 KNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp EECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence 544332 2235789998642 578999999999988875
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-26 Score=208.66 Aligned_cols=296 Identities=16% Similarity=0.200 Sum_probs=187.9
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCC-----C----CeEEecCCCCCChhhhhhhccCcEEEEEeC----CCC----CCccc
Q 019899 17 PSQIVLTAGATPAVEILCFCLADH-----G----NALLVPSPYYPGFDRDIRFRTGVELIPVHC----RST----DNFAF 79 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~-----g----d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~----~~~----~~~~~ 79 (334)
.+++++|+|+++|+..++.++.++ | |+|+++.+.|..+..... ..|..+..... +.. .++.+
T Consensus 89 ~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (467)
T 2oqx_A 89 YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ-INGCTVRNVYIKEAFDTGVRYDFKGNF 167 (467)
T ss_dssp CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHH-HTTCEEEECBCTTTTCTTSCCTTTTCB
T ss_pred cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhhhh-ccCcceeeccccccccCCCCCCccCCc
Confidence 378999999999999999998877 8 998877433333333444 45666554321 111 34568
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCcEEEEeccccc----------cccCCCC
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPV-GNIIPRETLYELLDFAREKNIHVISDEIYGG----------SIFGNEE 148 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~----------~~~~~~~ 148 (334)
|+++|++++++.. ..++++|++++|+||+ |.+++.+++++|.++|++||+++|+|+++.. ..+.+..
T Consensus 168 d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~ 245 (467)
T 2oqx_A 168 DLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT 245 (467)
T ss_dssp CHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSC
T ss_pred CHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCcc
Confidence 9999999998531 1268999999999997 9999999999999999999999999966533 1232322
Q ss_pred cchhhh-hhhccccCCCcEEEEecccccCCCC-CceEEEEeecCH---HHHHHHHHhhc-c-----c-CCChHHHHHHHH
Q 019899 149 FVSMAE-ILEAEEVDKDRVHIIYGLSKDLSLP-GFRTGVIYSYNE---SVLAAAKKLTR-F-----C-SISAPTQRLLIS 216 (334)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~~~~~~s~sK~~~~~-g~r~g~i~~~~~---~~~~~~~~~~~-~-----~-~~~~~~~~~~~~ 216 (334)
...+.. .... .+ +++.|+||+++++ | ||++++++ +....++.... . + ..+.....++..
T Consensus 246 ~~~~~~~~~~~----~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 316 (467)
T 2oqx_A 246 IEQITRETYKY----AD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAV 316 (467)
T ss_dssp HHHHHHHHGGG----CS--EEEEESSSTTCCSSC---EEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHH
T ss_pred HHHHhhhhhcc----CC--eEEEecccccCCCCc---eEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHH
Confidence 222210 0010 22 3578999999866 4 78887444 24344433221 1 1 112222222222
Q ss_pred hhCChHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCC---cCCCCChhhHHHHHHHHHHhcCeE
Q 019899 217 MLSDTKFIQEYL-ETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSG---LIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 217 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
.+ ++++ .+..++..++.+++.+.|++.++++. +.+++++|++++. ..+. ...+...+...|++++||.
T Consensus 317 ~l------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~ 388 (467)
T 2oqx_A 317 GL------YDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPA-DQFPAQALACELYKVAGIR 388 (467)
T ss_dssp HH------HHTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCG-GGCHHHHHHHHHHHHHCEE
T ss_pred hh------HhhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCc-ccccHHHHHHHHHHhcCce
Confidence 11 1111 12233446777888888888788777 7778889998853 1111 1111445688865778999
Q ss_pred EcCCCCc--CCC---------CCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 293 VTPGSAC--HCI---------EPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 293 v~~g~~~--~~~---------~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
+.|+..| +.. ..+++|++++. .+++++++++++|++++++
T Consensus 389 ~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 389 AVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp CEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred ecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 9985532 210 13789999984 6899999999999999865
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=205.97 Aligned_cols=286 Identities=15% Similarity=0.185 Sum_probs=193.4
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
++.+++.++. +++++++|+++|+..++.++ .++||+|+++.|+|.++...++ ..|.+++.+++++ +++.+|++++
T Consensus 42 ~~~la~~~~~--~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~d~~~l 117 (373)
T 3frk_A 42 EQEFADYCNV--NYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVS-YTGAKPIFVEPDI-RTYNIDPSLI 117 (373)
T ss_dssp HHHHHHHHTS--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHH-HHSCEEEEECEET-TTTEECGGGT
T ss_pred HHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-HcCCEEEEEeccc-cccCcCHHHH
Confidence 3344433333 48999999999999999999 8999999999999999999988 8899999999853 4578899999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 163 (334)
++++++ ++++|+ |+||||...+ +++|.++|+++|+++|+|++|+.+. +.+. .+. .
T Consensus 118 ~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~~~------~~~------~ 173 (373)
T 3frk_A 118 ESAITE------KTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLYKGM------KVG------S 173 (373)
T ss_dssp GGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETTE------ETT------S
T ss_pred HHhcCC------CCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEECCE------ecc------c
Confidence 998875 788777 6789999988 8899999999999999999998633 2111 111 1
Q ss_pred CcEEEEeccc--ccCCCCCceEEEEeecCHHHHHHHHHhhccc--------------CCChHHHHHHHHhhCChHHHHHH
Q 019899 164 DRVHIIYGLS--KDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--------------SISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 164 ~~~~~~~s~s--K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
..++.+.||+ |.++..|. .|+++++++++.+.++.....+ ..+..........+ +.
T Consensus 174 ~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~-------~~ 245 (373)
T 3frk_A 174 LGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL-------KY 245 (373)
T ss_dssp SSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH-------HT
T ss_pred cccEEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHH-------HH
Confidence 1246677866 98873354 7888887788888777654321 11222222211111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCC-CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-----
Q 019899 228 LETNKRRIKKLYDSFVAGLKQLGIRCSES-SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC----- 301 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----- 301 (334)
+++..++.+++.+++.+.|++.++.+... .+....|..++-.. .+..++... |+++||.+.++.....
T Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-L~~~gI~v~~~~~~~~~~~~~ 319 (373)
T 3frk_A 246 LDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRS-----EKRDELQKY-LNNNGIGTLIHYPIPIHLQQA 319 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEE-----SSHHHHHHH-HHHTTBCCBCSCSSCGGGSGG
T ss_pred HHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEe-----CCHHHHHHH-HHHCCCCcccCcCCccccChH
Confidence 34455666777788888887766444322 22222221111110 024567777 5557999986652110
Q ss_pred ------C----------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 302 ------I----------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 302 ------~----------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
. ..+.+|++++. .|++|++++++.|++...+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~ 368 (373)
T 3frk_A 320 YKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEH 368 (373)
T ss_dssp GGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred HHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 0 01579999986 69999999999999876554
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=207.04 Aligned_cols=287 Identities=14% Similarity=0.112 Sum_probs=180.5
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHH---hcCCCCeEEecCCCCCChhhhhhhcc----------Cc----
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFC---LADHGNALLVPSPYYPGFDRDIRFRT----------GV---- 64 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~---l~~~gd~vl~~~p~~~~~~~~~~~~~----------g~---- 64 (334)
++++.+.. + ++++|++++|+++|+..++.. +.+ +++|++.+|+|+++........ |.
T Consensus 103 a~~l~~~~----~-~~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (453)
T 2cy8_A 103 AERIVAAF----P-SIRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPET 176 (453)
T ss_dssp HHHHHHHC----T-TCSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC----------------------------C
T ss_pred HHHHHhhC----C-CCCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccc
Confidence 45555532 3 578999999999999999988 654 4678888899987655332011 22
Q ss_pred --EEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCcEEEEecccc
Q 019899 65 --ELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNII-PRETLYELLDFAREKNIHVISDEIYG 140 (334)
Q Consensus 65 --~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~ 140 (334)
+++.++. .|+++|++++++. +.++++| +++| +||||.+. +.+++++|.++|++||+++|+||+|+
T Consensus 177 ~~~~~~~~~-------~d~~~le~~l~~~---~~~~~~v-i~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 245 (453)
T 2cy8_A 177 TANTLLIRP-------DDIEGMREVFANH---GSDIAAF-IAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS 245 (453)
T ss_dssp GGGEEEECT-------TCHHHHHHHHHHH---GGGEEEE-EECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cCceeecCC-------CCHHHHHHHHHhc---CCCEEEE-EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 1333331 3899999999753 1256655 5555 57899765 69999999999999999999999999
Q ss_pred ccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-------hhcccCCChHHHHH
Q 019899 141 GSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-------LTRFCSISAPTQRL 213 (334)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 213 (334)
++ +.+.. ...... + . ... +.|+||.++ +|+|+||+++ ++++++.+.. ....++.|++.+.+
T Consensus 246 g~-~~g~~-~~~~~~-~---~-~~d---i~s~sK~l~-~G~~~G~v~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa 313 (453)
T 2cy8_A 246 GF-RVGNH-GMQALL-D---V-QPD---LTCLAKASA-GGLPGGILGG-REDVMGVLSRGSDRKVLHQGTFTGNPITAAA 313 (453)
T ss_dssp TT-TTCTT-HHHHHH-T---C-CCS---EEEEEGGGG-TTSSCEEEEE-CHHHHTTSSSCC---------CCCCHHHHHH
T ss_pred cc-ccCch-hhhHHh-C---C-CCc---EEEEChhhh-CCcceEEEec-hHHHHHHhccccCCCceeCCCCCCCHHHHHH
Confidence 77 43321 111111 1 1 112 348999998 6999999998 7788776654 22345678888887
Q ss_pred HHHhhCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCC-----c-----CC---CCCh
Q 019899 214 LISMLSD-TKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSG-----L-----IP---SYSE 275 (334)
Q Consensus 214 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~-----~-----~~---~~~~ 275 (334)
+.++++. . .+...++++++.+++.+.|++. ++....+..|.++|++++. . .. ....
T Consensus 314 ~~aal~~~~------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (453)
T 2cy8_A 314 AIAAIDTIL------EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDV 387 (453)
T ss_dssp HHHHHHHHH------HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCH
T ss_pred HHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccH
Confidence 7776643 2 1223445555666666666543 4433223345678888874 1 00 0011
Q ss_pred hhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 276 KGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 276 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
....++...|++ +||.+.|+ +.+|+++. .+++++++++++|++++++.
T Consensus 388 ~~~~~l~~~l~~-~Gv~v~~~--------~~~~l~~~-~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 388 KMIAAMRMALIL-EGVDIGGR--------GSVFLSAQ-HEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp HHHHHHHHHHHH-TTEECBTT--------TEEECCTT-CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCeEEeCC--------CCEEeecc-CCHHHHHHHHHHHHHHHHHH
Confidence 234578888665 79999653 23676643 79999999999999988753
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=201.42 Aligned_cols=278 Identities=15% Similarity=0.203 Sum_probs=195.4
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
++.+++.++. +++++++|+++|+..++.++ .++||+|+++.|+|.++...+. ..|.+++.+++++ +.+.+|++++
T Consensus 41 ~~~la~~~~~--~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~-~~G~~~~~~~~~~-~~~~~d~~~l 116 (367)
T 3nyt_A 41 EDRLADFVGA--KYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVA-LLGAKPVYVDIDP-RTYNLDPQLL 116 (367)
T ss_dssp HHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-HTTCEEEEECBCT-TTCSBCGGGT
T ss_pred HHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-HcCCEEEEEecCC-ccCCcCHHHH
Confidence 3344433333 48999999999999999999 8999999999999999999998 8999999999853 3478999999
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 163 (334)
++++++ ++++|+ |+||+|...+ +++|.++|+++|++||+|++|+.+. +.+.. . .. .
T Consensus 117 ~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~~~~~---~---~~-----~ 173 (367)
T 3nyt_A 117 EAAITP------RTKAII---PVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASYKGKR---S---CN-----L 173 (367)
T ss_dssp GGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEETTEE---T---TS-----S
T ss_pred HHhcCc------CCcEEE---eeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeECCee---c---cC-----C
Confidence 999865 788666 7789999888 9999999999999999999997532 22211 1 10 1
Q ss_pred CcEEEEecc--cccCCCCCceEEEEeecCHHHHHHHHHhhcc--------------cCCChHHHHHHHHhhCChHHHHHH
Q 019899 164 DRVHIIYGL--SKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--------------CSISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 164 ~~~~~~~s~--sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
+ ++.+.|| +|.++.+|. .|+++++++++.+.++..... +..++....+....+..
T Consensus 174 ~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~------- 244 (367)
T 3nyt_A 174 S-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEI------- 244 (367)
T ss_dssp S-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHT-------
T ss_pred C-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHH-------
Confidence 2 5777786 899985476 888888788898888765432 23444444443333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCC-Ccee----EEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-
Q 019899 228 LETNKRRIKKLYDSFVAGLKQLGIRCSES-SAGL----YCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC- 301 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~g~----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~- 301 (334)
+++..++.+++.+++.+.|++.++.+... .+.. .+.+.++ +..++... |+++||.+.++.....
T Consensus 245 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~-L~~~GI~~~~~~~~~~~ 314 (367)
T 3nyt_A 245 FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---------NRESVQAS-LKAAGVPTAVHYPIPLN 314 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS---------SHHHHHHH-HHHHTCCCBCSCSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC---------CHHHHHHH-HHHCCCceeccCCCccc
Confidence 23344555666778888888877654422 2211 1223333 23567777 5557999876542100
Q ss_pred -------C----------CCCeEEEEecC-CCcccHHHHHHHHHHH
Q 019899 302 -------I----------EPGWFRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 302 -------~----------~~~~iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
. ..+.+|+++.. ++++|++++++.+++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 315 KQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp GSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred cChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 0 01468999885 6999999999998764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=205.86 Aligned_cols=285 Identities=15% Similarity=0.088 Sum_probs=179.1
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC-------------------cEEEEEeCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG-------------------VELIPVHCRST 74 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g-------------------~~v~~v~~~~~ 74 (334)
..+++++++|+++++..++.... .++++|++.+++|++.........+ ..+..++.
T Consensus 108 ~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 184 (429)
T 4e77_A 108 TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY--- 184 (429)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT---
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC---
Confidence 57899999999999999988542 3567899999998876542110111 11222221
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCC-cccCCC-HHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANP-VGNIIP-RETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~np-tG~~~~-~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
.|+++|++++++. +.+++ +++++|.|+ +|.+.+ .+.+++|.++|++||+++|+||+|.++ ..+... ..
T Consensus 185 ----~d~~~le~~l~~~---~~~~~-~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~-~~ 254 (429)
T 4e77_A 185 ----NDLASVRQAFEQY---PQEVA-CIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAG-AQ 254 (429)
T ss_dssp ----TCHHHHHHHHHHS---TTTEE-EEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTC-HH
T ss_pred ----CCHHHHHHHHHhc---CCCEE-EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcch-HH
Confidence 2789999998752 12455 556677554 455443 556999999999999999999999987 444321 11
Q ss_pred hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-----hhcccCCChHHHHHHHHhhCChHHHHHH
Q 019899 153 AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-----LTRFCSISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
... . . ... +.|+||.++ +|+|+||+++ ++++++.+.. ....++.+++.+.++.+.++..+. ++.
T Consensus 255 ~~~-~---~-~pd---i~t~sK~~~-~G~~~G~~~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~ 323 (429)
T 4e77_A 255 DYY-H---V-IPD---LTCLGKIIG-GGMPVGAFGG-RREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGV 323 (429)
T ss_dssp HHT-T---C-CCS---EEEEEGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTH
T ss_pred Hhc-C---C-CCC---eeeeccccc-CCCCeEEEEE-CHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCH
Confidence 111 1 1 111 348999998 8999999998 8888887764 234467888888887777652210 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC--------CChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 228 LETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS--------YSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
.++.++.....++.+.+.+.+.++....+..|.++|++++..... .......++...|++ +||.+.|+..
T Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~- 401 (429)
T 4e77_A 324 YETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLE-EGVYLAPSAF- 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHH-TTEECCSSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHH-CCeEEeecCC-
Confidence 222222222333333333344455444444577788888753110 011233577788555 7999998652
Q ss_pred CCCCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 300 HCIEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
..+|+++. .+++++++++++|++++++
T Consensus 402 -----~~~~~~~~-~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 402 -----EAGFMSLA-HSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp -----SCEECCTT-CCHHHHHHHHHHHHHHHTT
T ss_pred -----CCEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 34666544 7999999999999999865
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-25 Score=196.77 Aligned_cols=268 Identities=14% Similarity=0.111 Sum_probs=186.7
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh----ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF----RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~----~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+++++++++++|+.. +..++++||+|+++.|+|.+....+.. ..|.+++.++.. |++++++++++
T Consensus 83 ~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~--- 151 (400)
T 3nmy_A 83 TRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-------DPAAFKAAIRA--- 151 (400)
T ss_dssp SEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-------SHHHHHHHCCT---
T ss_pred CCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-------CHHHHHHHhcc---
Confidence 467888888999998 567889999999999999976665441 359999999852 78999999875
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+...+. ..+ . .+.++++.|++
T Consensus 152 ---~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~-------~~~-~-----~g~div~~S~s 212 (400)
T 3nmy_A 152 ---DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQ-------RPL-S-----LGADLVVHSAT 212 (400)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC-------CGG-G-----GTCSEEEEETT
T ss_pred ---CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC-------Chh-h-----cCCcEEEecCc
Confidence 7999999999999999999 999999999999999999998742221 111 1 35678999999
Q ss_pred ccCCCCCceEEE--EeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 174 KDLSLPGFRTGV--IYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 174 K~~~~~g~r~g~--i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
|.++.+|.++|+ +++.++++.+.++.....+ ..++.....+...++.. ..+.++..++++.+.+.|++.
T Consensus 213 K~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l-------~~r~~~~~~~a~~l~~~L~~~ 285 (400)
T 3nmy_A 213 KYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTL-------PLRMRAHCENALALAQWLETH 285 (400)
T ss_dssp TTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHH-------HHHHHHHHHHHHHHHHHHHcC
Confidence 999867766644 5556888888887654443 44555555555555442 334455677778888888775
Q ss_pred C-Cccc-C----------------CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC----------
Q 019899 250 G-IRCS-E----------------SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC---------- 301 (334)
Q Consensus 250 g-~~~~-~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------- 301 (334)
. +..+ . ...|.+++++++.. ......+.+. ++-.++.+..|..++.
T Consensus 286 p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~-----~~~~~~~~~~-l~~~~~~~s~G~~~sl~~~p~~~~~~ 359 (400)
T 3nmy_A 286 PAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG-----FDAAKRFCEK-TELFTLAESLGGVESLVNHPAVMTHA 359 (400)
T ss_dssp TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-----HHHHHHHHHH-CSSSEECSCCCSSSCEEECTTTTTTT
T ss_pred CCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc-----HHHHHHHHHc-CCcceEecCCCCCcceeeCccccccc
Confidence 2 2211 1 12356778888642 0122334444 3334444444443211
Q ss_pred -----------CCCCeEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 302 -----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 302 -----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
..++.+|+|++ .|+.+++++.|.++++
T Consensus 360 ~~~~~~~~~~gi~~~liRlsvG---le~~~dli~dl~~al~ 397 (400)
T 3nmy_A 360 SIPVARREQLGISDALVRLSVG---IEDLGDLRGDLERALV 397 (400)
T ss_dssp TSCHHHHHHHTCCTTEEEEECC---SSCHHHHHHHHHHHHC
T ss_pred cCCHHHHHhcCCCcCeEEEEeC---cCCHHHHHHHHHHHHh
Confidence 12468999999 6677778888888775
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-25 Score=204.14 Aligned_cols=305 Identities=12% Similarity=0.171 Sum_probs=206.0
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc-------C-CCC------eEEecCCCCCChhhhhhhccCc---E
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA-------D-HGN------ALLVPSPYYPGFDRDIRFRTGV---E 65 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~-------~-~gd------~vl~~~p~~~~~~~~~~~~~g~---~ 65 (334)
+++.+.++ .+.+++++++|+|+++..++.++. + +|+ +|+++.+.|+++...++ ..|. +
T Consensus 155 ~~la~l~g----~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~-~~g~g~~~ 229 (515)
T 2jis_A 155 RKLRALVG----WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAA-FLGLGTDS 229 (515)
T ss_dssp HHHHHHHT----CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTTSCGGG
T ss_pred HHHHHHhC----CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHH-HcCCCCCc
Confidence 45555554 457899999999999988888763 2 565 89999999999999888 7777 8
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccC
Q 019899 66 LIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFG 145 (334)
Q Consensus 66 v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~ 145 (334)
++.+|++ +++.+|+++|++++++...++.++++|++++|+||||.+.| +++|.++|+++|+++++|++|+.+.+.
T Consensus 230 v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~ 304 (515)
T 2jis_A 230 VRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHGLWLHVDAAWGGSVLL 304 (515)
T ss_dssp EEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred EEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcCCeEEEehhhhhHHHh
Confidence 9999973 46789999999999876666667999999999999999999 999999999999999999999987654
Q ss_pred CCCcch-hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCH-HHHHHHHH-hhcc--------------c--C-
Q 019899 146 NEEFVS-MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE-SVLAAAKK-LTRF--------------C--S- 205 (334)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~-~~~~~~~~-~~~~--------------~--~- 205 (334)
...+.. +..+ .+.++++.|++|+++ .+.++|+++++++ ++.+.... ...+ + +
T Consensus 305 ~~~~~~~~~g~-------~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 376 (515)
T 2jis_A 305 SQTHRHLLDGI-------QRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVV 376 (515)
T ss_dssp CTTTGGGGTTG-------GGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCS
T ss_pred ChhhHhhcCCC-------ccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCC
Confidence 332221 1111 234577889999987 3457899998665 45443211 0000 0 0
Q ss_pred -----CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-CceeEEeeecCCcCCC----CC
Q 019899 206 -----ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES-SAGLYCWADMSGLIPS----YS 274 (334)
Q Consensus 206 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~-~~g~~~~~~~~~~~~~----~~ 274 (334)
...+.+.++..++. .+.+.+..++..++++++.+.|++. ++++..+ ..+.++|...|..... ..
T Consensus 377 ~~~rr~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~ 451 (515)
T 2jis_A 377 QCGRRVDCLKLWLMWKAQG-----DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPD 451 (515)
T ss_dssp CSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTT
T ss_pred CCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchh
Confidence 01222233333321 3345677888889999999999987 8887653 3455554343432111 00
Q ss_pred hhh-----HHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEe-cC-CCcccHHHHHHHHHHHHHH
Q 019899 275 EKG-----ELELWDKLLNIAKINVTPGSACHCIEPGWFRCCF-TS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 275 ~~~-----~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~-~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
... ...+...+.+ .|+.+...... ....+++|+++ .. .+++|++++++.|++++++
T Consensus 452 ~~~~l~~~~~~l~~~l~~-~G~~~~~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 452 YHERLSKVAPVLKERMVK-EGSMMIGYQPH-GTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp HHHHHHTHHHHHHHHHHH-HTSCEEEEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh-cCCEEEEEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 000 1124555444 57544211100 01246899999 44 5899999999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=204.32 Aligned_cols=278 Identities=15% Similarity=0.126 Sum_probs=187.0
Q ss_pred CCCcEEEecCcHHHHHHHHHH---hcCCCCeEEecCCCCCChhhhhhhc-------------cCc------EEEEEeCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFC---LADHGNALLVPSPYYPGFDRDIRFR-------------TGV------ELIPVHCRS 73 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~---l~~~gd~vl~~~p~~~~~~~~~~~~-------------~g~------~v~~v~~~~ 73 (334)
+++++++++|+++|+..++.. +. ++++|++.+|+|+++...+... .|. +++.++.
T Consensus 107 ~~~~v~~~~~g~ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-- 183 (424)
T 2e7u_A 107 FVDLVRFVNSGTEATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-- 183 (424)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT--
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC--
Confidence 578999999999999999886 44 4578999999998865532201 121 3444442
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCC-CcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNPAN-PVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~n-ptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
.|+++|++++++. +.+++ +++++|.| +||.+. +.+.+++|.++ ++||+++|+||+|.++ ..+... .
T Consensus 184 -----~d~~~le~~l~~~---~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~-~ 251 (424)
T 2e7u_A 184 -----NDPEGLREVLKRR---GEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGG-A 251 (424)
T ss_dssp -----TCHHHHHHHHHHH---GGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTH-H
T ss_pred -----CCHHHHHHHHHhC---CCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhH-H
Confidence 3789999998752 11455 55667755 589766 68899999999 9999999999999987 333211 1
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-----hcccCCChHHHHHHHHhhCChHHHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
.+..+ . ..+ +.|+||+++ +|+|+||+++ ++++++.+... ...++.|++++.++.++++.. ++
T Consensus 252 -~~~~~---~-~~d---i~s~sK~l~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~ 318 (424)
T 2e7u_A 252 -TELLG---L-KPD---LVTLGKILG-GGLPAAAYAG-RREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL---EE 318 (424)
T ss_dssp -HHHHT---C-CCS---EEEECGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH---HH
T ss_pred -HHHhC---C-Ccc---hhhhhhhhh-CCcceEEEEE-cHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH---Hh
Confidence 11111 1 122 338999999 6999999998 78888777651 234567888888777776532 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcC-CC------CChhhHHHHHHHHHHhcCeEEcC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLI-PS------YSEKGELELWDKLLNIAKINVTP 295 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~-~~------~~~~~~~~~~~~ll~~~gi~v~~ 295 (334)
..+..++++++.+++.+.|++. ++....+..|.++|++++... .. .......++...|+ ++||.+.|
T Consensus 319 -~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~ 396 (424)
T 2e7u_A 319 -NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPP 396 (424)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCS
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEec
Confidence 1345566666777777777653 553222334567888887521 00 01123457788866 58999998
Q ss_pred CCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 296 g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
+.. ..+|+++. .+++++++++++|++++
T Consensus 397 ~~~------~~~~~~~~-~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 397 SNF------EAAFLSVA-HREEDVEKTLEALRKAL 424 (424)
T ss_dssp SSS------SCEECCTT-CCHHHHHHHHHHHHHHC
T ss_pred cCC------CceEeecc-CCHHHHHHHHHHHHHhC
Confidence 752 34677654 79999999999998763
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-26 Score=207.71 Aligned_cols=281 Identities=15% Similarity=0.098 Sum_probs=192.0
Q ss_pred CCCCcEEEecCcHHHHHHHHHHhc---C-----------CCCeEEecCCCCCChhhhhhhccC-------------cEEE
Q 019899 15 FDPSQIVLTAGATPAVEILCFCLA---D-----------HGNALLVPSPYYPGFDRDIRFRTG-------------VELI 67 (334)
Q Consensus 15 ~~~~~i~~~~g~~~~~~~~~~~l~---~-----------~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~ 67 (334)
.+.++|++++|+++|+..++..+. + +||+|++.+|+|+++........| .+++
T Consensus 117 ~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (449)
T 2cjg_A 117 PALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRI 196 (449)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEE
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcE
Confidence 467899999999999999987542 2 289999999999876554321222 1566
Q ss_pred EEeCCCCCCc--------cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCcEEEEecc
Q 019899 68 PVHCRSTDNF--------AFSITALDQAFNQARKRGVKVRGILICNPANPVG-NIIPRETLYELLDFAREKNIHVISDEI 138 (334)
Q Consensus 68 ~v~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG-~~~~~~~l~~i~~~~~~~~~~vi~D~~ 138 (334)
.+|.++...+ ..++++|++++++. ..++++|++..++||+| ...+.+++++|.++|++||+++|+||+
T Consensus 197 ~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv 273 (449)
T 2cjg_A 197 DAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEV 273 (449)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred EEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecc
Confidence 6665320011 25667788888631 13677655444478999 588999999999999999999999999
Q ss_pred ccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHH-------HhhcccCCChHHH
Q 019899 139 YGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAK-------KLTRFCSISAPTQ 211 (334)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~-------~~~~~~~~~~~~~ 211 (334)
|.++.+.|..+ .+... + . ... +.|+||.+ |+||+++ ++++++.+. .....++.|++.+
T Consensus 274 ~~g~g~~g~~~-~~~~~-~---~-~~d---i~t~sK~l-----~iG~~~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~~ 338 (449)
T 2cjg_A 274 QTGCGLTGTAW-AYQQL-D---V-APD---IVAFGKKT-----QVCGVMA-GRRVDEVADNVFAVPSRLNSTWGGNLTDM 338 (449)
T ss_dssp TTTTTTTSSSS-THHHH-T---C-CCS---EEEECGGG-----SSEEEEE-CGGGGGSTTCTTTSTTSSCCSSSSCHHHH
T ss_pred ccCCCccCcce-eeccc-C---C-Cce---EEEecCcc-----cEEEEEE-CHHHhhhhhhcccCCcccccCCCCCHHHH
Confidence 99876655421 11111 1 1 122 23789988 5899998 667776522 1223466788888
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C--CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHH
Q 019899 212 RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----G--IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKL 285 (334)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (334)
.++.++++..+ + ....++++++.+++.+.|+++ . +....+. |.+++++++.. .+..++...|
T Consensus 339 ~aa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~-g~~~~~~~~~~------~~~~~~~~~l 406 (449)
T 2cjg_A 339 VRARRILEVIE---A--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGR-GLMCAFSLPTT------ADRDELIRQL 406 (449)
T ss_dssp HHHHHHHHHHH---H--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEE-TTEEEEECSSH------HHHHHHHHHH
T ss_pred HHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeec-cEEEEEEECCh------HHHHHHHHHH
Confidence 88887775322 1 234566677777777777654 2 3233444 44556787642 2345788886
Q ss_pred HHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 286 LNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 286 l~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++ +||.+.|+. ++++|++++. .+++++++++++|++++++
T Consensus 407 ~~-~Gv~v~~~g------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 407 WQ-RAVIVLPAG------ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp HH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HH-CCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 65 899998863 4789998764 6999999999999999875
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=204.04 Aligned_cols=302 Identities=14% Similarity=0.121 Sum_probs=207.7
Q ss_pred hhhhhhhhcCCCCCC-------CCcEEEecCcHHHHHHHHHHhcC-------------------CCCeEEecCCCCCChh
Q 019899 2 AGFMSQVLGQAVSFD-------PSQIVLTAGATPAVEILCFCLAD-------------------HGNALLVPSPYYPGFD 55 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~-------~~~i~~~~g~~~~~~~~~~~l~~-------------------~gd~vl~~~p~~~~~~ 55 (334)
++|+.+.++ .+.+ ....++|+|+|+++..++.+... +++.|+++.++|.++.
T Consensus 119 ~~~l~~~~g--~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~ 196 (475)
T 3k40_A 119 MDWLGKMLE--LPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVE 196 (475)
T ss_dssp HHHHHHHTT--CCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHH
T ss_pred HHHHHHHhC--CCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHH
Confidence 456676655 3211 13689999999999888777521 3468999999999999
Q ss_pred hhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEE
Q 019899 56 RDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVIS 135 (334)
Q Consensus 56 ~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~ 135 (334)
..+. ..|.+++.+|++ .++ +|+++|+++|++....+..+.+++++.++|++|.+.+ +++|.++|++||+++++
T Consensus 197 ~~~~-~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~I~~la~~~~~~lhv 269 (475)
T 3k40_A 197 RAGL-LGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDECGPVGNKHNLWIHV 269 (475)
T ss_dssp HHHH-HHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred HHHH-HcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHHHHHHHHHhCCeEEE
Confidence 9998 889999999983 456 9999999999986655556888999999999999988 99999999999999999
Q ss_pred eccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHH-HHHHHhhcccC---------
Q 019899 136 DEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVL-AAAKKLTRFCS--------- 205 (334)
Q Consensus 136 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~-~~~~~~~~~~~--------- 205 (334)
|++|+...+....... ... +. ...+.+..++||+++ .+..+|+++.+++... +.+.....+..
T Consensus 270 D~A~~~~~~~~~~~~~---~~~--gi-~~~Ds~~~~~hK~l~-~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~ 342 (475)
T 3k40_A 270 DAAYAGSAFICPEYRH---LMK--GI-ESADSFNFNPHKWML-VNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPD 342 (475)
T ss_dssp ECTTGGGGGGSGGGGG---GGT--TG-GGCSEEEECHHHHSS-CCSSCEEEEESSGGGC---------------------
T ss_pred eHHhHHHHHhCHhhHH---Hhc--Cc-ccCCEEEECchhccC-CCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCC
Confidence 9999875432211111 110 00 123567789999886 4456788887666542 22221111100
Q ss_pred -------CC----hHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCC
Q 019899 206 -------IS----APTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSY 273 (334)
Q Consensus 206 -------~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~ 273 (334)
.+ ...+.++..++ ..+.+.++.++..++++++.+.|++. ++++..+....+++++++..
T Consensus 343 ~~~~~~~~sr~~~~l~l~~al~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~---- 413 (475)
T 3k40_A 343 YRHWQIPLGRRFRALKLWFVLRLY-----GVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS---- 413 (475)
T ss_dssp ------CCCGGGTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSC----
T ss_pred cccccccCCCcccHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCc----
Confidence 01 11222222222 13446778888999999999999997 88887665555566776532
Q ss_pred ChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 274 SEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 274 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
.....++.++|.++.++.+.|+...+ ..++|+++++ .+++|+++++++|+++.++
T Consensus 414 -~~~~~~l~~~L~~~g~~~~~~~~~~g---~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 414 -NERNEALLKRINGRGHIHLVPAKIKD---VYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp -HHHHHHHHHHHHHHTSCBCEEEEETT---EEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHhCCcEEEEeeEECC---EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 12346788886665445555544332 4689999874 4889999999999998875
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=198.75 Aligned_cols=206 Identities=12% Similarity=0.104 Sum_probs=148.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+++.+++..+ .+++++++|+++|++.++.+++++||+|+++.+.|++....+. ...|.+++.++. .|+
T Consensus 87 le~~lA~l~g--~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~-------~d~ 157 (415)
T 2fq6_A 87 LQQAMCELEG--GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP-------LIG 157 (415)
T ss_dssp HHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT-------TCG
T ss_pred HHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECC-------CCH
Confidence 3344443333 3467888999999999999999999999999999998776542 157999999885 278
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh--cCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE--KNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++++++++ ++++|++++|+||+|.+.| +++|.++|++ +|+++++|++|+.... ..++ .
T Consensus 158 ~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~----~~p~----~-- 218 (415)
T 2fq6_A 158 ADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL----FKAL----D-- 218 (415)
T ss_dssp GGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS----SCGG----G--
T ss_pred HHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc----CCcc----c--
Confidence 889998876 7999999999999999999 8999999999 9999999999975322 1111 1
Q ss_pred ccCCCcEEEEecccccCCCCCce-EEEEeecCHHHHHHHHHhhcccC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFR-TGVIYSYNESVLAAAKKLTRFCS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r-~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
.+.++++.|++|.++.+|.+ .|++++ ++++++.++.....++ .++.....+...+ +.+..+.++..
T Consensus 219 ---~g~Div~~S~sK~lg~~g~~~~G~l~~-~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l-------~~l~~r~~~~~ 287 (415)
T 2fq6_A 219 ---FGIDVSIQAATKYLVGHSDAMIGTAVC-NARCWEQLRENAYLMGQMVDADTAYITSRGL-------RTLGVRLRQHH 287 (415)
T ss_dssp ---GTCSEEEEETTTTTTCSSSCCCEEEEE-CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred ---cCCeEEEEeCccccCCCCCceEEEEEe-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------hHHHHHHHHHH
Confidence 45678899999999877754 689988 5567777765543322 2333222222222 12234445556
Q ss_pred HHHHHHHHHHHhC
Q 019899 237 KLYDSFVAGLKQL 249 (334)
Q Consensus 237 ~~~~~~~~~l~~~ 249 (334)
+++..+.+.|++.
T Consensus 288 ~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 288 ESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC
Confidence 6777777777765
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=192.33 Aligned_cols=289 Identities=17% Similarity=0.196 Sum_probs=192.5
Q ss_pred hhhhhh-cCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 4 FMSQVL-GQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 4 ~~~~~~-~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
-+++.+ ++.++ ..+++++++|+++++..++.++ +++||+|+++.|+|.++...+. ..|.+++.+++++ +++.+|+
T Consensus 40 ~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~-~~G~~~~~v~~~~-~~~~~d~ 116 (377)
T 3ju7_A 40 RFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAI-WCGLEPYFIDISI-DDWYMDK 116 (377)
T ss_dssp HHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHH-HTTCEEEEECBCT-TTCSBCH
T ss_pred HHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-HcCCEEEEEecCC-ccCCcCH
Confidence 345555 65555 3678999999999999999998 8999999999999999999988 8999999999853 5678999
Q ss_pred HHHHHHHHHHHHcCCc--eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 82 TALDQAFNQARKRGVK--VRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~--~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++++++++. + +++|+ |+||+|...+ +++|.++|+ +|++||+|++|+...... ...+..
T Consensus 117 ~~l~~~i~~~-----~~~tk~v~---~~~~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~-----~~~~g~-- 177 (377)
T 3ju7_A 117 TVLWDKIEEL-----KEEVAIVV---PYATFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNG-----GMHYGQ-- 177 (377)
T ss_dssp HHHHHHHHHH-----GGGEEEEC---CBCGGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEET-----TEETTT--
T ss_pred HHHHHHHhcC-----CCCceEEE---EECCCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeEC-----CEeccC--
Confidence 9999998432 5 88776 6788999999 888888999 999999999997533111 011100
Q ss_pred ccCCCcEEEEec--ccccCCCCCceEEEEeecCHHHHHHHHHhhcc--------------cCCChHHHHHHHHhhCChHH
Q 019899 160 EVDKDRVHIIYG--LSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--------------CSISAPTQRLLISMLSDTKF 223 (334)
Q Consensus 160 ~~~~~~~~~~~s--~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~ 223 (334)
....+.+.| .+|.++ +| +.|+++++++++.+.++..... +..+..........++
T Consensus 178 ---~~~d~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~---- 248 (377)
T 3ju7_A 178 ---DFSGMIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMK---- 248 (377)
T ss_dssp ---TCSSEEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHH----
T ss_pred ---CCCcEEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHH----
Confidence 111234444 569997 45 6788888789998888776442 2233333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CcccCCCc--ee--EEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQLG---IRCSESSA--GL--YCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~--g~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
.+....++.+++++++.+.|++.+ +......+ .+ ++.+.++... +..++... |+++||.++++
T Consensus 249 ---~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~-L~~~gI~~~~~ 318 (377)
T 3ju7_A 249 ---KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV------RNKQVIED-LKKQKIEARLY 318 (377)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS------CHHHHHHH-HHTTTBCCBCT
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh------hHHHHHHH-HHHCCCceecc
Confidence 223444555666677777777764 22222111 11 2234444321 24577777 66689998766
Q ss_pred CC--cCCC-----------------CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 297 SA--CHCI-----------------EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 297 ~~--~~~~-----------------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.. ++.. ..+.+|+.+.. .+++|++++++.|++++.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 319 FSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp TSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred cCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 51 2110 01358999885 69999999999999887653
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=194.08 Aligned_cols=278 Identities=14% Similarity=0.107 Sum_probs=182.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh----hhccCcEEEEE-eCCCCCCccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI----RFRTGVELIPV-HCRSTDNFAF 79 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~----~~~~g~~v~~v-~~~~~~~~~~ 79 (334)
+++.+++.++.+ +.++++++++++..++.+++++||+|+++.++|+++...+ + ..|.+++.+ +..
T Consensus 63 l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~------- 132 (421)
T 2ctz_A 63 LEKRLAALEGGK--AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLK-RLGIEVRFTSREE------- 132 (421)
T ss_dssp HHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHH-HTTCEEEECCTTC-------
T ss_pred HHHHHHHHhCCC--ceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH-HcCCEEEEECCCC-------
Confidence 334444434333 4455666699999999999999999999999999887776 5 689999998 741
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccc-cccccCCCCcchhhhhhhc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIY-GGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~-~~~~~~~~~~~~~~~~~~~ 158 (334)
|++++++++++ ++++|++++|+||+|.+.| +++|.++|+++|+++|+|++| +.. +.+. .+ .
T Consensus 133 d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g-~~~~---~~----~- 194 (421)
T 2ctz_A 133 RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGG-YLLR---PL----A- 194 (421)
T ss_dssp CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGG-TSCC---GG----G-
T ss_pred CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccc-ccCC---cc----c-
Confidence 78999999876 8999999999999999999 999999999999999999999 542 2111 11 1
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecC--HHH----HHHHHHh---------------------------hcc-c
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN--ESV----LAAAKKL---------------------------TRF-C 204 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~--~~~----~~~~~~~---------------------------~~~-~ 204 (334)
.+.++++.|++|.++.+|.++|++++.+ +++ .+.+... ... .
T Consensus 195 ----~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~ 270 (421)
T 2ctz_A 195 ----WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQ 270 (421)
T ss_dssp ----GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCC
T ss_pred ----cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCC
Confidence 3456888999999988898999888742 221 1122110 001 1
Q ss_pred CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC------------------CCceeEEeee
Q 019899 205 SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE------------------SSAGLYCWAD 265 (334)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~------------------~~~g~~~~~~ 265 (334)
..++...+++...++. +..+.++..++.+++.+.|+++ +++.+. ...|.++.+.
T Consensus 271 ~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~ 343 (421)
T 2ctz_A 271 ALGPFEAWVVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFG 343 (421)
T ss_dssp CCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEE
T ss_pred CCCHHHHHHHHcCcch-------HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEE
Confidence 2333333333333322 2233445557888888888886 555431 1123345566
Q ss_pred cCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC---------------------CCCCeEEEEecCCCcccHHHHHH
Q 019899 266 MSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC---------------------IEPGWFRCCFTSLTHEDIPLVIE 324 (334)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------------------~~~~~iRi~~~~~~~~~l~~~l~ 324 (334)
+... ..+...+... ++..++.++.|..+.. ..++.+|+|++ .++++++++
T Consensus 344 l~~~-----~~~~~~~~~~-l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g---~e~~~~li~ 414 (421)
T 2ctz_A 344 LKGG-----YEAAKRFISR-LKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG---LEHVEDLKA 414 (421)
T ss_dssp ETTH-----HHHHHHHHHT-CSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC---SSCHHHHHH
T ss_pred eCCC-----HHHHHHHHHh-CCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeC---CCCHHHHHH
Confidence 6531 0122233333 3334555555532110 12478999998 679999999
Q ss_pred HHHHHH
Q 019899 325 RIQKVA 330 (334)
Q Consensus 325 ~l~~~~ 330 (334)
.|.+++
T Consensus 415 ~l~~al 420 (421)
T 2ctz_A 415 ELKEAL 420 (421)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998875
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=204.96 Aligned_cols=308 Identities=11% Similarity=0.006 Sum_probs=193.1
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh-hhhccCcEEEEEeCCCCCCc----ccc
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD-IRFRTGVELIPVHCRSTDNF----AFS 80 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~-~~~~~g~~v~~v~~~~~~~~----~~~ 80 (334)
++.+++.++.+ ..+++++|+++++.+++.+++++||+|+++.++|.++... +. ..|++++.++... +.+ .+|
T Consensus 179 e~~lA~~~gae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~-l~Ga~~v~v~~~~-~~~~i~g~id 255 (730)
T 1c4k_A 179 EKHAARVYNAD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALA-MAGGRPVYLQTNR-NPYGFIGGIY 255 (730)
T ss_dssp HHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTT-TTCCEEEEECEEE-CTTCCEEEEC
T ss_pred HHHHHHHHCCC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHH-HCCCEEEEEeCCc-cccCccCCCC
Confidence 33444445544 3488888889999999999999999999999999999888 77 8899999887632 222 368
Q ss_pred HHHH-----HHHHHHH-HH--cCCce-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc-ccCCCCcc
Q 019899 81 ITAL-----DQAFNQA-RK--RGVKV-RGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS-IFGNEEFV 150 (334)
Q Consensus 81 ~~~l-----~~~l~~~-~~--~~~~~-~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~-~~~~~~~~ 150 (334)
+++| ++++++. .. +..++ +++++++| ||+|.+.+ +++|+++|+++|++|++|++|+.. .+.+. ..
T Consensus 256 ~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~~~~~f~~~-~~ 330 (730)
T 1c4k_A 256 DSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGYEQFIPM-MR 330 (730)
T ss_dssp GGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCGGGSSGG-GG
T ss_pred HHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcccccccccCcc-cC
Confidence 8888 7777541 00 01112 88999998 58999998 999999999999999999999753 23211 10
Q ss_pred hhhhhhh-ccccCCCcEEEEecccccCCCCCce-EEEEeecCHHH--------HHHHHHh---hcccCCChHHHHHHHHh
Q 019899 151 SMAEILE-AEEVDKDRVHIIYGLSKDLSLPGFR-TGVIYSYNESV--------LAAAKKL---TRFCSISAPTQRLLISM 217 (334)
Q Consensus 151 ~~~~~~~-~~~~~~~~~~~~~s~sK~~~~~g~r-~g~i~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~ 217 (334)
....+.. ..+.+..+++++.|+||+++ |++ .|+++++++.+ ...+... ....+.+.....++..+
T Consensus 331 g~~~l~~~~~g~D~~~~iv~~S~hK~L~--g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA 408 (730)
T 1c4k_A 331 NSSPLLIDDLGPEDPGIIVVQSVHKQQA--GFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVN 408 (730)
T ss_dssp GGCTTSCCCCCTTSCEEEEEECHHHHSS--CCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred CcCcccccccCCCCCCEEEEECCCCCCC--CCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 0111110 00112345689999999874 333 35664434332 1222221 11223444444443333
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcccCCC-------------------------------------c
Q 019899 218 LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ--LGIRCSESS-------------------------------------A 258 (334)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~-------------------------------------~ 258 (334)
+.... .+...+..+++.++.+++++.|++ .|+++..+. .
T Consensus 409 ~~~l~--~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 486 (730)
T 1c4k_A 409 AAMQE--GEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGD 486 (730)
T ss_dssp HHHHS--HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCT
T ss_pred HHHHH--hhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCC
Confidence 32111 112234456677788888888887 377664432 1
Q ss_pred e-e-E----EeeecCCc--CC---CCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHH
Q 019899 259 G-L-Y----CWADMSGL--IP---SYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERI 326 (334)
Q Consensus 259 g-~-~----~~~~~~~~--~~---~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l 326 (334)
+ + + +.+..|+. .. .....++.++.+.| .++||.+... ....+|++++. .++++++.++++|
T Consensus 487 ~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L-~e~GI~v~~~------~~~~ir~~~s~g~t~e~i~~Ll~aL 559 (730)
T 1c4k_A 487 NQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYL-RDHGIIPEKS------DLNSILFLMTPAETPAKMNNLITQL 559 (730)
T ss_dssp TCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHH-HHTTCCCSEE------CSSEEEEECCTTCCHHHHHHHHHHH
T ss_pred cccccCCeEEEEEeCCcccccccccccCCCHHHHHHHH-HHCCcEEEEC------CCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 1 1 1 34444421 00 01123456777774 4569987542 24679999885 6889999999999
Q ss_pred HHHHHH
Q 019899 327 QKVAET 332 (334)
Q Consensus 327 ~~~~~~ 332 (334)
+++.+.
T Consensus 560 ~~i~~~ 565 (730)
T 1c4k_A 560 LQLQRL 565 (730)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-24 Score=203.43 Aligned_cols=297 Identities=10% Similarity=0.027 Sum_probs=186.7
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcc----c-----cHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFA----F-----SITALDQAF 88 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~----~-----~~~~l~~~l 88 (334)
+.+++++|+++++.+++.+++++||+|+++.|+|.++...+. ..|++++.++...+ +++ + |++++++++
T Consensus 222 ~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~-~~G~~~v~v~~~~~-~~g~~g~i~~~~~d~e~le~~i 299 (755)
T 2vyc_A 222 RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLM-LTGAKPVYMVPSRN-RYGIIGPIYPQEMQPETLQKKI 299 (755)
T ss_dssp EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-HHCCEEEEECCCBC-TTSCBCCCCGGGGSHHHHHHHH
T ss_pred ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-HcCCEEEEEeCCCC-ccccccccCcCCCCHHHHHHHH
Confidence 457888999999999999999999999999999999999988 88999999987432 222 4 999999999
Q ss_pred HHH----HHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhc-cccC
Q 019899 89 NQA----RKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEA-EEVD 162 (334)
Q Consensus 89 ~~~----~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 162 (334)
++. ..++.+++++++++| ||+|.+.+ +++|.++|+++|++|++|++|+... +.+ ...+...+..+ .++.
T Consensus 300 ~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~~~~~~-~~~~~~~~~g~~aD~~ 374 (755)
T 2vyc_A 300 SESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNP-IYADHYAMRGEPGDHN 374 (755)
T ss_dssp HHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTTGGGCG-GGTTSSSSCSCCCCCS
T ss_pred HhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchhcccCc-ccCCcchhcCCcCCcc
Confidence 762 113345568999998 79999999 9999999999999999999997532 221 10001111000 0222
Q ss_pred CCcEEEEecccccCCCCCce-EEEEeecCH--HH-HHHHHHh---hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFR-TGVIYSYNE--SV-LAAAKKL---TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r-~g~i~~~~~--~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
..+++++.|+||+++ |++ .|+++++++ .+ ...+... ....+++.+...++..+++... .+...+..+++
T Consensus 375 ~~~~iv~~S~hK~L~--g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~--~~gg~~~~~~~ 450 (755)
T 2vyc_A 375 GPTVFATHSTHKLLN--ALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMD--GNSGLSLTQEV 450 (755)
T ss_dssp SBEEEEEEETTTSSS--CCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHS--THHHHHHHHHH
T ss_pred CCCeEEEECcccccc--CcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hhhHHHHHHHH
Confidence 456779999999874 443 566666443 11 1222221 1223444444444443332110 00012334445
Q ss_pred HHHHHHHHHHHHhC-C---------CcccCCC-------------------------------------------ce---
Q 019899 236 KKLYDSFVAGLKQL-G---------IRCSESS-------------------------------------------AG--- 259 (334)
Q Consensus 236 ~~~~~~~~~~l~~~-g---------~~~~~~~-------------------------------------------~g--- 259 (334)
.++.+++++.|+++ + +++..+. .+
T Consensus 451 ~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 530 (755)
T 2vyc_A 451 IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSM 530 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEE
T ss_pred HHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCccc
Confidence 55555556655543 2 3332221 11
Q ss_pred ---eEEeeecCCcC-CC---CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 260 ---LYCWADMSGLI-PS---YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 260 ---~~~~~~~~~~~-~~---~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
..+.+.+++.. ++ ....++.++... |+++||.+... ..+.+|+.++. .|+++++.++++|+++.+
T Consensus 531 ~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~-L~~~gI~~e~~------~~~~v~~~~~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 531 LDPIKVSILAPGMGEDGELEETGVPAALVTAW-LGRHGIVPTRT------TDFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp ECTTEEEEECSCBCTTSSBCSSCCCHHHHHHH-HHTTTCCCSEE------CSSEEEEECCTTCCTTTTHHHHHHHHHHHH
T ss_pred cCCeEEEEEcCCCCCCCCccccCCcHHHHHHH-HHHCCCEEeec------CCCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 12334444311 11 012344567777 56699876431 25679999885 699999999999998865
Q ss_pred H
Q 019899 332 T 332 (334)
Q Consensus 332 ~ 332 (334)
.
T Consensus 604 ~ 604 (755)
T 2vyc_A 604 H 604 (755)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-25 Score=199.84 Aligned_cols=278 Identities=13% Similarity=0.122 Sum_probs=183.4
Q ss_pred hhcCCCCCCCCcEEEecCcHHHHHHHHHH-hcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHH
Q 019899 8 VLGQAVSFDPSQIVLTAGATPAVEILCFC-LADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 8 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~~-l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
.+++.++++++++++++|++.++.++..+ ..++||+|+++.++|+++...++. ..|.+++.++. +++.+|+++
T Consensus 116 ~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~---~~~~~d~~~ 192 (438)
T 1wyu_A 116 MIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL---EGGRTPLPE 192 (438)
T ss_dssp HHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC---BTTBCCCCC
T ss_pred HHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC---cCCccCHHH
Confidence 33344456777899999999554444333 247899999999999999876641 37999999996 234677766
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecc-ccccccCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEI-YGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~-~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
+++ ++++|++++| ||||.+.+ +++|.++|+++|+++++|.. .+...+ .. + ..
T Consensus 193 ----i~~------~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~---~~-~-~~-------- 245 (438)
T 1wyu_A 193 ----VGE------EVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVL---KP-P-GA-------- 245 (438)
T ss_dssp ----CCT------TEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTB---CC-H-HH--------
T ss_pred ----hCC------CeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCc---CC-C-cc--------
Confidence 433 7999999999 99999998 99999999999999996632 211111 11 1 11
Q ss_pred CCcEEEEecccccCC----CCCceEEEEeecCHHHHHHHHH----------------------------hhcccCCCh-H
Q 019899 163 KDRVHIIYGLSKDLS----LPGFRTGVIYSYNESVLAAAKK----------------------------LTRFCSISA-P 209 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~----~~g~r~g~i~~~~~~~~~~~~~----------------------------~~~~~~~~~-~ 209 (334)
.+.++++.| +|.+| +.|.++|++++ ++++.+.+.. .....+.++ .
T Consensus 246 ~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~ 323 (438)
T 1wyu_A 246 YGADIAVGD-GQSLGLPMGFGGPHFGFLAT-KKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNA 323 (438)
T ss_dssp HTCSEEEEE-CTTTTCCCGGGCSCCEEEEE-CGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCC
T ss_pred CCCCEEEEC-CcccCCCccCCCCCeeEEEE-cHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchH
Confidence 234456666 55443 34568999998 6666544311 011111100 1
Q ss_pred HHHHHHHh--hCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHH
Q 019899 210 TQRLLISM--LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLL 286 (334)
Q Consensus 210 ~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll 286 (334)
...++..+ +... ..+.+.+..+++.++++++.+.|++. |+++..+. +++.++.+... .+..++.++|.
T Consensus 324 ~~~a~~aa~~l~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~------~~~~~~~~~L~ 394 (438)
T 1wyu_A 324 QLTALMGAMYLAAL--GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALP------KDPEAVRRALA 394 (438)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECS------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCC------CCHHHHHHHHH
Confidence 12222222 2211 13345777888999999999999998 88887653 33322223211 13468888866
Q ss_pred HhcCeEE--cCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 287 NIAKINV--TPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 287 ~~~gi~v--~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
+ +||.+ .++..|+ ++++|++++. .+++|+++++++|++++
T Consensus 395 ~-~gi~v~~~~~~~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 395 E-RGFHGATPVPREYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp H-TTCCCCEECCTTSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred H-CCceeccccccccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 5 69998 6777664 6799999986 58999999999998764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=184.47 Aligned_cols=243 Identities=14% Similarity=0.095 Sum_probs=172.8
Q ss_pred hhhhhcCCCCCCCCcEEE---ecCcHHHHHHHHHHhcCCCCeEEecC-CCCCChhh----------hhhhccCcEEEEEe
Q 019899 5 MSQVLGQAVSFDPSQIVL---TAGATPAVEILCFCLADHGNALLVPS-PYYPGFDR----------DIRFRTGVELIPVH 70 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~---~~g~~~~~~~~~~~l~~~gd~vl~~~-p~~~~~~~----------~~~~~~g~~v~~v~ 70 (334)
+.+.+++.++. +..++ ++++++|+..++.+++++||+|+++. |.|..+.. .++ ..|.+++.++
T Consensus 64 Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~-~~G~~~~~v~ 140 (409)
T 3jzl_A 64 LERVYATVFKT--EAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLK-DFHIGYSSVP 140 (409)
T ss_dssp HHHHHHHHHTC--SEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTG-GGTCEEEECC
T ss_pred HHHHHHHHhCC--CcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHH-HcCCEEEEeC
Confidence 34444443433 44455 88999999999999999999999998 99998874 445 6799999999
Q ss_pred CCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeC----CCCCcccCCCHHHHHHHHHHHHh--cCcEEEEecccccccc
Q 019899 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICN----PANPVGNIIPRETLYELLDFARE--KNIHVISDEIYGGSIF 144 (334)
Q Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~----p~nptG~~~~~~~l~~i~~~~~~--~~~~vi~D~~~~~~~~ 144 (334)
++ .++.+|++++++++++ ++++|++++ |+||||.+.+ +++|+++|++ +|+++++|++|+.+.+
T Consensus 141 ~~--~~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v~~---l~~I~~la~~~~~~~~livD~a~~~~~~ 209 (409)
T 3jzl_A 141 LL--ENGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTIEK---IKEMIVFVKNINPEVIVFVDNCYGEFVE 209 (409)
T ss_dssp CC--TTSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHH---HHHHHHHHHHHCTTCEEEEECTTCTTTS
T ss_pred CC--CCCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCcccc---HHHHHHHHHhhCCCCEEEEeCCcccccc
Confidence 74 4567999999999976 799999999 9999998866 9999999999 9999999999987654
Q ss_pred CCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhcc--c----CCChHHHHHHHHh
Q 019899 145 GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRF--C----SISAPTQRLLISM 217 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~ 217 (334)
...+ . . .+.+++++|+||.+|.+| ...||+++ ++++++.++..... . +.+.....++...
T Consensus 210 ~~~p-~------~-----~g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~g 276 (409)
T 3jzl_A 210 YQEP-P------E-----VGADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQG 276 (409)
T ss_dssp SCCS-G------G-----GTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHH
T ss_pred cCCc-c------c-----cCCeEEEECccccCCccCCceEEEEEe-CHHHHHHHHHHhccccccccccccHHHHHHHHHH
Confidence 2211 1 1 355689999999997554 44699998 89999988764221 1 1111112222222
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCce----eEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 218 LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAG----LYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
+ .....+.++..+++.++.+.|+++|+++.+.... ..+.+.+.. .+....+++.|..
T Consensus 277 l-------~~~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~------~~~~~~~~~~L~~ 337 (409)
T 3jzl_A 277 F-------FLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHN------KEKMVAFAQAIQA 337 (409)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSC------HHHHHHHHHHHHH
T ss_pred H-------hhHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCC------HHHHHHHHHHHHh
Confidence 2 1234566778889999999999999877433222 244455542 2345677777444
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-22 Score=179.38 Aligned_cols=269 Identities=14% Similarity=0.093 Sum_probs=181.3
Q ss_pred cEEEecCcHHHHHHHHHHh-------cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHH
Q 019899 19 QIVLTAGATPAVEILCFCL-------ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQA 91 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~l-------~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~ 91 (334)
++++++++++++..++.++ .++||+|+++.|+|.++...+. ..|.+++.+++++ +++.+|++++++++++
T Consensus 51 ~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~- 127 (390)
T 3b8x_A 51 YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQ-QYGLRVKFVDIDI-NTLNIDIESLKEAVTD- 127 (390)
T ss_dssp EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHH-HTTCEEEEECBCT-TTCSBCHHHHHHHCCT-
T ss_pred cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHH-HcCCEEEEEecCc-cccCcCHHHHHHHhCc-
Confidence 6788888889999999998 7889999999999999999998 8999999999853 3478999999999875
Q ss_pred HHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEe-
Q 019899 92 RKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY- 170 (334)
Q Consensus 92 ~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (334)
++++|++++ ++|...+ +++|.++|+++|+++|+|++|+.+... ....+. ...++...
T Consensus 128 -----~~~~v~~~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~-----~~~~~g------~~~~~~~~s 185 (390)
T 3b8x_A 128 -----STKAILTVN---LLGNPNN---FDEINKIIGGRDIILLEDNCESMGATF-----NNKCAG------TFGLMGTFS 185 (390)
T ss_dssp -----TEEEEEEEC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTCTTCEE-----TTEETT------SSSSEEEEE
T ss_pred -----CCeEEEEEC---CccChhh---HHHHHHHHHHcCCEEEEECcCcccCEE-----CCcccc------cccceEEEE
Confidence 789888874 5677677 999999999999999999999853221 111110 11122222
Q ss_pred -cccccCCCCCceEEEEeecCHHHHHHHHHhhccc-----------------------------C----CChHHHHHHHH
Q 019899 171 -GLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC-----------------------------S----ISAPTQRLLIS 216 (334)
Q Consensus 171 -s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~-----------------------------~----~~~~~~~~~~~ 216 (334)
..+|.++ +|. .|+++++++++.+.++.....+ + .+.....+...
T Consensus 186 ~~~~k~~~-~g~-gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~ 263 (390)
T 3b8x_A 186 SFYSNHIA-TME-GGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE 263 (390)
T ss_dssp CCTTSSSC-SSS-CEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH
T ss_pred ccCCCCCc-cCC-ceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHH
Confidence 2345553 343 4999986667776665432111 1 22222222222
Q ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--Ccee-EEeeecCCcCCCCChhhHHHHHHHHHHhcCeE
Q 019899 217 MLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES--SAGL-YCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~--~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
.+ +.+++..++.+++++++.+.|++. ++++..+ ..++ .+++.++... ..+..++... |+++||.
T Consensus 264 ~l-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~-L~~~gI~ 331 (390)
T 3b8x_A 264 QL-------KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDS----GVIRKQLVEN-LNSAGIE 331 (390)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTS----CCCHHHHHHH-HHHTTBC
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcC----cccHHHHHHH-HHHCCCC
Confidence 21 234566777788889999999886 6766543 2333 3555665311 1134577777 4568999
Q ss_pred EcC---CCCcCC-C--C-----------------CCeEEEEecC-CCcccHHHHHHHH
Q 019899 293 VTP---GSACHC-I--E-----------------PGWFRCCFTS-LTHEDIPLVIERI 326 (334)
Q Consensus 293 v~~---g~~~~~-~--~-----------------~~~iRi~~~~-~~~~~l~~~l~~l 326 (334)
+.+ +..+.. . . .+.+|++++. .|++|++++++.|
T Consensus 332 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 332 CRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp CBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred eeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 886 332211 0 0 0359999986 6999999998876
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-23 Score=184.10 Aligned_cols=244 Identities=11% Similarity=0.068 Sum_probs=171.3
Q ss_pred hhhhcCCCCCCCCcEEE---ecCcHHHHHHHHHHhcCCCCeEEecC-CCCCChh-----------hhhhhccCcEEEEEe
Q 019899 6 SQVLGQAVSFDPSQIVL---TAGATPAVEILCFCLADHGNALLVPS-PYYPGFD-----------RDIRFRTGVELIPVH 70 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~---~~g~~~~~~~~~~~l~~~gd~vl~~~-p~~~~~~-----------~~~~~~~g~~v~~v~ 70 (334)
.+++++.++. +..++ ++++++|+..++.+++++||+|++++ |.|+.+. ..++ ..|.+++.++
T Consensus 79 e~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~-~~G~~~~~v~ 155 (427)
T 3i16_A 79 DAVYARVFNT--ESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLK-EFGINYKQVD 155 (427)
T ss_dssp HHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTG-GGTCEEEECC
T ss_pred HHHHHHHhCC--cceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHH-HcCCEEEEec
Confidence 3344443443 33355 78889999999999999999999999 9999876 3445 6799999999
Q ss_pred CCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeC----CCCCcccCCCHHHHHHHHHHHHh--cCcEEEEecccccccc
Q 019899 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICN----PANPVGNIIPRETLYELLDFARE--KNIHVISDEIYGGSIF 144 (334)
Q Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~----p~nptG~~~~~~~l~~i~~~~~~--~~~~vi~D~~~~~~~~ 144 (334)
+. .++.+|++++++++++ ..++++|++++ |+||+|.+.+ +++|+++|++ +|+++++|++|+.+.+
T Consensus 156 ~~--~~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i~d---l~~i~~la~~~~~g~~livD~a~~~~~~ 226 (427)
T 3i16_A 156 LK--EDGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLIED---IKSIVDCVKNIRKDIICFVDNCYGEFMD 226 (427)
T ss_dssp CC--TTSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCHHH---HHHHHHHHHHHCTTSEEEEECTTTTTSS
T ss_pred Cc--cCCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccHHH---HHHHHHHHHHhCCCCEEEEECCCccccc
Confidence 74 3457899999999982 01799999999 9999987755 9999999999 9999999999987654
Q ss_pred CCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhc--ccC--CCh-HH-HHHHHHh
Q 019899 145 GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTR--FCS--ISA-PT-QRLLISM 217 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~--~~~--~~~-~~-~~~~~~~ 217 (334)
...+ . . .+.+++++|+||.+|.+| .+.||+++ ++++++.++.... ..+ .++ .. ...+...
T Consensus 227 ~~~p---~----~-----~gaDiv~~S~sK~lgg~g~~~gG~i~~-~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~g 293 (427)
T 3i16_A 227 TKEP---T----D-----VGADLIAGSLIKNIGGGIAPTGGYLAG-TKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQG 293 (427)
T ss_dssp SSCG---G----G-----GTCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHH
T ss_pred cCCc---c----c-----cCCeEEEecCcccCCCCCCceEEEEEE-CHHHHHHHHHhcccCccCccCCccHHHHHHHHHH
Confidence 2211 1 1 355689999999997555 56799998 8999998876322 111 111 11 1111111
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCce----eEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 218 LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAG----LYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
+ .....+.+++.+++.++.+.|+++|+++.+..+. ..+.+.+.. .+....+++.|..
T Consensus 294 l-------~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~------~~~~~~f~~~l~~ 354 (427)
T 3i16_A 294 L-------FLAPHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFND------KDKLIEFCKGIQT 354 (427)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSS------HHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECC------HHHHHHHHHHHhh
Confidence 1 1234567788889999999999998877433222 144455532 2345567777444
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=182.47 Aligned_cols=243 Identities=15% Similarity=0.087 Sum_probs=170.9
Q ss_pred hhhhcCCCCCCCCcEEE---ecCcHHHHHHHHHHhcCCCCeEEecC-CCCCChh-----------hhhhhccCcEEEEEe
Q 019899 6 SQVLGQAVSFDPSQIVL---TAGATPAVEILCFCLADHGNALLVPS-PYYPGFD-----------RDIRFRTGVELIPVH 70 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~---~~g~~~~~~~~~~~l~~~gd~vl~~~-p~~~~~~-----------~~~~~~~g~~v~~v~ 70 (334)
++++++.++ .+..++ ++++++|+..++.+++++||+|++++ |.|..+. ..++ ..|.+++.++
T Consensus 80 e~~lA~l~g--~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~-~~G~~~~~v~ 156 (427)
T 3hvy_A 80 DRVYANIFN--TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLR-EYGVKYKMVD 156 (427)
T ss_dssp HHHHHHHHT--CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTG-GGTCEEEECC
T ss_pred HHHHHHHhC--CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHH-HcCCEEEEec
Confidence 344443343 344466 78899999999999999999999999 9998876 3455 6799999998
Q ss_pred CCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeC----CCCCcccCCCHHHHHHHHHHHHh--cCcEEEEecccccccc
Q 019899 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICN----PANPVGNIIPRETLYELLDFARE--KNIHVISDEIYGGSIF 144 (334)
Q Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~----p~nptG~~~~~~~l~~i~~~~~~--~~~~vi~D~~~~~~~~ 144 (334)
. +++.+|++++++++++ ..++++|++++ |+||||.+.+ +++|+++|++ +|+++++|++|+.+.+
T Consensus 157 ~---~~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v~d---l~~i~~ia~~~~~g~~livD~a~~~~~~ 226 (427)
T 3hvy_A 157 L---KDGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRIAE---IAEIIKSIREVNENVIVFVDNCYGEFVE 226 (427)
T ss_dssp C---BTTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCHHH---HHHHHHHHHHHCSSSEEEEECTTCTTTS
T ss_pred C---CCCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccHHH---HHHHHHHHHHhCCCCEEEEECCcccccc
Confidence 7 4467999999999983 01899999999 9999987755 9999999999 8999999999987654
Q ss_pred CCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHhhc--ccC--CCh-HH-HHHHHHh
Q 019899 145 GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKLTR--FCS--ISA-PT-QRLLISM 217 (334)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~--~~~--~~~-~~-~~~~~~~ 217 (334)
... +. . .+.+++++|+||.++.+| .+.||+++ ++++++.++.... ..+ .++ +. ...+...
T Consensus 227 ~~~---p~----~-----~gaDiv~~S~sK~lgg~g~~~GG~i~~-~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~g 293 (427)
T 3hvy_A 227 EKE---PT----D-----VGADIIAGSLIKNIGGGIATTGGYIAG-KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEG 293 (427)
T ss_dssp SSC---GG----G-----GTCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHH
T ss_pred CCC---Cc----c-----cCCeEEEECCcccccccccceEEEEEE-CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHh
Confidence 221 11 1 355689999999997444 45699988 8999998876432 111 111 11 1222222
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCce----eEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 218 LSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAG----LYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
+ .....+.++..+++.++.+.|+++|+++.+.++. ..+.+.+.. .+....+++.|..
T Consensus 294 l-------~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~~------~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 294 L-------FMAPHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFND------EKKLIDFIKGIQT 354 (427)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECSS------HHHHHHHHHHHHH
T ss_pred H-------hHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCCC------HHHHHHHHHHhcc
Confidence 1 1224566778889999999999999877433222 255566642 2344567777433
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=184.15 Aligned_cols=231 Identities=15% Similarity=0.085 Sum_probs=166.1
Q ss_pred ecCcHHHHHHHHHHhcCCCCeEEecC-CCCCChhhhhh---------hccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 23 TAGATPAVEILCFCLADHGNALLVPS-PYYPGFDRDIR---------FRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 23 ~~g~~~~~~~~~~~l~~~gd~vl~~~-p~~~~~~~~~~---------~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
++++++|+..++.+++++||+|+++. |.|..+...+. ...|.+++.++.+ .++.+|++++++++++
T Consensus 89 ~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~--~~~~~d~e~l~~~l~~-- 164 (431)
T 3ht4_A 89 IISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLT--EGGLVDFEAVAAAIHS-- 164 (431)
T ss_dssp SCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBC--TTSSBCHHHHHHHCCT--
T ss_pred eeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCC--CCCCcCHHHHHhhcCC--
Confidence 34678999999999999999999998 99999886543 0479999999984 3468999999999975
Q ss_pred HcCCceeEEEEeC-CCCCcccCCCHHHHHHHHHHHHh--cCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEE
Q 019899 93 KRGVKVRGILICN-PANPVGNIIPRETLYELLDFARE--KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 93 ~~~~~~~~i~~~~-p~nptG~~~~~~~l~~i~~~~~~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
++++|++++ |+||+|...+.+++++|+++|++ +|+++++|++|+.+.+.... . . .+.++++
T Consensus 165 ----~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~---~----~-----~g~Di~~ 228 (431)
T 3ht4_A 165 ----NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP---C----H-----VGADLMA 228 (431)
T ss_dssp ----TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCG---G----G-----TTCSEEE
T ss_pred ----CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCc---c----c-----cCCeEEE
Confidence 899999994 89999999999999999999999 99999999999987653321 1 1 3456889
Q ss_pred ecccccCCC-CCceEEEEeecCHHHHHHHHHhhcc--c----CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 019899 170 YGLSKDLSL-PGFRTGVIYSYNESVLAAAKKLTRF--C----SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSF 242 (334)
Q Consensus 170 ~s~sK~~~~-~g~r~g~i~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
+|++|.+|. .+...||+++ ++++++.++..... . +.+......+...+ .....+.++..+++.++
T Consensus 229 ~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~a~~l 300 (431)
T 3ht4_A 229 GSLIKNPGGGIVKTGGYIVG-KEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGF-------FLAPHVAGQALKGAIFT 300 (431)
T ss_dssp EETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred cCccccCCCCCCCceEEEEe-cHHHHHHHHHHhccCCcccccCccHHHHHHHHhHh-------hhHHHHHHHHHHHHHHH
Confidence 999999752 1233499998 88998888764322 1 11111112222221 12245566788888999
Q ss_pred HHHHHhCCCcccCCC----ceeEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 243 VAGLKQLGIRCSESS----AGLYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 243 ~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
.+.|+++|+++.+.. .+..+.+.++. .+...++++.|.+
T Consensus 301 ~~~L~~~g~~v~p~~~~~~~~li~~i~l~~------~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 301 AAFLEKLGMNTSPAWNAPRTDLIQSVQFDD------KDRMIAFCQAIQY 343 (431)
T ss_dssp HHHHHHHTCCEESCTTSCCSSSCCEEECCC------HHHHHHHHHHHHH
T ss_pred HHHHHhCcCEecCCCCCCCccEEEEEEeCC------HHHHHHHHHHHHh
Confidence 999999888764322 22244455542 2345577777444
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=185.64 Aligned_cols=288 Identities=15% Similarity=0.094 Sum_probs=184.5
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc--------C-----------------CC---CeEEecCCCCCChhhhhhhccCc
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA--------D-----------------HG---NALLVPSPYYPGFDRDIRFRTGV 64 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~--------~-----------------~g---d~vl~~~p~~~~~~~~~~~~~g~ 64 (334)
.+.+.+++++++|+++|+..++..+. . +| ++|++.+++|.++........|.
T Consensus 123 ~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~ 202 (472)
T 1ohv_A 123 APKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHS 202 (472)
T ss_dssp CCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCS
T ss_pred CCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCC
Confidence 44467899999999999999998763 1 35 89999999998766544213332
Q ss_pred EE-----------EEEeCCC---C--CC--c-----cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccC-CCHHHHH
Q 019899 65 EL-----------IPVHCRS---T--DN--F-----AFSITALDQAFNQARKRGVKVRGILICNPANPVGNI-IPRETLY 120 (334)
Q Consensus 65 ~v-----------~~v~~~~---~--~~--~-----~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~ 120 (334)
.. ..++++. . .. + ..|+++|++++++....+.++++|++...+|++|.+ .+.+.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~ 282 (472)
T 1ohv_A 203 KAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFR 282 (472)
T ss_dssp CHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHH
T ss_pred ccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHH
Confidence 11 1122210 0 00 0 236889999987643322367777666668889975 5788999
Q ss_pred HHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh
Q 019899 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL 200 (334)
Q Consensus 121 ~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~ 200 (334)
+|.++|++||+++|+||+|.++.+.|.. ..+... +. .....+.||||.+ +.| |+++ ++++. .+...
T Consensus 283 ~l~~l~~~~g~lli~DEv~~g~g~~g~~-~~~~~~----gv--~~~~Di~t~sK~~-l~G---G~~~--~~~~~-~~~~~ 348 (472)
T 1ohv_A 283 KLRDISRKHGCAFLVDEVQTGGGSTGKF-WAHEHW----GL--DDPADVMTFSKKM-MTG---GFFH--KEEFR-PNAPY 348 (472)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSS-SGGGGG----CC--SSCCSEEEECGGG-SSE---EEEE--CGGGS-CSSSS
T ss_pred HHHHHHHHhCCEEEEeCcccCCCCCCCc-hhcccc----CC--CCCCCEEEEcccc-ccC---CccC--chhhc-ccccc
Confidence 9999999999999999999876554431 122111 01 0002234899994 233 6665 44442 11111
Q ss_pred --hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCc----ccCCCceeEEeeecCCcCCC
Q 019899 201 --TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL--GIR----CSESSAGLYCWADMSGLIPS 272 (334)
Q Consensus 201 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~----~~~~~~g~~~~~~~~~~~~~ 272 (334)
...++.+++.+.++.++++..+ + ....++++++.+++.+.|+++ ++. ...+. |.+++++++..
T Consensus 349 ~~~~T~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~-g~~~~~~~~~~--- 419 (472)
T 1ohv_A 349 RIFNTWLGDPSKNLLLAEVINIIK---R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR-GTFCSFDTPDE--- 419 (472)
T ss_dssp SSCCSSSSCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-TTEEEEECSSH---
T ss_pred cccCccCccHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCC-ceEEEEEeCCh---
Confidence 2334568888887777764321 1 234566667777777777654 222 12333 45566676531
Q ss_pred CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 273 YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 273 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
....++...|++ +||.+.|+. .+++|++++. .+++++++++++|.+++++.
T Consensus 420 ---~~~~~~~~~l~~-~Gv~~~~~g------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 420 ---SIRNKLISIARN-KGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp ---HHHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred ---hHHHHHHHHHHH-CCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 234678888665 899998842 4689998875 69999999999999998765
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-25 Score=200.41 Aligned_cols=290 Identities=13% Similarity=0.060 Sum_probs=192.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhh---hccCc--EEEEEeCCCCCCc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIR---FRTGV--ELIPVHCRSTDNF 77 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~---~~~g~--~v~~v~~~~~~~~ 77 (334)
+.+.+.+.++ ..+.+++++++++|+..++..+. ..+++|++.+++|.+...... ...|. .++.+|.
T Consensus 145 Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~------ 217 (465)
T 2yky_A 145 FAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY------ 217 (465)
Confidence 3344444444 56789999999999999988752 456899999999977554322 01233 2333331
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
.|+++|++++++. +.++++|++...++++|.+. +.+.+++|.++|++||+++|+||+|. +.. +.. ... +.
T Consensus 218 -~d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~~-~a~-~~- 288 (465)
T 2yky_A 218 -NDVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SGG-GAQ-EM- 288 (465)
Confidence 3788999988742 12677776654466799655 57789999999999999999999999 632 221 111 10
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-------hhcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-------LTRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.+....+.|+||.+| .|+|+||+++ ++++++.+.. ....++.|++++.++.+.++..+ + .
T Consensus 289 ------~gv~pDi~t~sK~lg-~G~piG~v~~-~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~--~---~ 355 (465)
T 2yky_A 289 ------LGISADLTTLGKYIG-GGMSFGAFGG-RRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY--T---R 355 (465)
Confidence 222233568999999 5999999998 7888888765 23446778888888777775432 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCC-cCCCC------ChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSG-LIPSY------SEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~-~~~~~------~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
...+++.++.+++.+.|++. ++....+..|.++|+.++. ..... .......+...|++ +||.+.|+..
T Consensus 356 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~~ 434 (465)
T 2yky_A 356 QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRGM 434 (465)
Confidence 34455556666666666553 3333334467778887764 11000 01123467778664 8999998762
Q ss_pred cCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
+ . +++. .+++|++++++++.+++++.
T Consensus 435 -~----~---~s~~-~t~edid~~l~~l~~~l~~~ 460 (465)
T 2yky_A 435 -Y----A---LSLE-IADAGRDAFAEALADFIGEQ 460 (465)
Confidence 2 1 5554 79999999999999988764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-22 Score=175.59 Aligned_cols=284 Identities=11% Similarity=0.070 Sum_probs=191.6
Q ss_pred hhhhcCCCCCCC-CcEEE-ecCcHHHHHHHHHHhcCC--CCeEEecCCCCCCh--hhhhhhccCcEEEEEeCCCCCCccc
Q 019899 6 SQVLGQAVSFDP-SQIVL-TAGATPAVEILCFCLADH--GNALLVPSPYYPGF--DRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 6 ~~~~~~~~~~~~-~~i~~-~~g~~~~~~~~~~~l~~~--gd~vl~~~p~~~~~--~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
++.+++.+++++ ++|++ ++|+|+++++++..+..+ ||+|++....+.+. ...++ ..|..++.+++ +.++..
T Consensus 64 r~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~-~~G~~~~~~~~--~~~~~~ 140 (377)
T 3e77_A 64 ENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAK-KFGTINIVHPK--LGSYTK 140 (377)
T ss_dssp HHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHT-TTSEEEECSCC--CSSSCS
T ss_pred HHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHH-HhCCceEEecc--CCCcCC
Confidence 333444455654 47888 578999999999999765 89988776555433 22344 57887777776 334456
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
+++.++.++++ ++++|.+++..|.||++.| + +|+++|+++++|.+++. +..+.++..
T Consensus 141 ~~~~~~~~i~~------~t~lV~~~h~et~tG~~~p---i-----i~~~~~~~~~vD~~q~~----g~~~id~~~----- 197 (377)
T 3e77_A 141 IPDPSTWNLNP------DASYVYYCANETVHGVEFD---F-----IPDVKGAVLVCDMSSNF----LSKPVDVSK----- 197 (377)
T ss_dssp CCCGGGCCCCT------TCSCEEEESEETTTTEECS---S-----CCCCTTCCEEEECTTTT----TSSCCCGGG-----
T ss_pred CCChHHhccCC------CccEEEEeCccCchheEch---h-----hhccCCCEEEEEccccc----CCCCCchhh-----
Confidence 66766665654 7899999988999999999 4 36789999999999875 333344432
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHH--------------HHHHhhcccCCChHHHHHHHHhhCChHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLA--------------AAKKLTRFCSISAPTQRLLISMLSDTKFIQ 225 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (334)
.+ +++.|.+|.+|++| +|+++.+ +++.+ ..+....+++++....+++..+++. +.
T Consensus 198 ---~~--~~~~s~~K~~gp~G--~g~l~~~-~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~---l~ 266 (377)
T 3e77_A 198 ---FG--VIFAGAQKNVGSAG--VTVVIVR-DDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEW---IK 266 (377)
T ss_dssp ---CS--EEEEEGGGTTSCTT--CEEEEEE-TTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHH---HH
T ss_pred ---cC--EEEEecccccCCCc--cEEEEEc-HHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHH---HH
Confidence 33 36679999999778 5666663 33211 1111223345666676777666643 23
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHhC-CCcccC----CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 226 E--YLETNKRRIKKLYDSFVAGLKQL-GIRCSE----SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 226 ~--~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
+ -+++..++.++..+++.+.|+++ |+.+.. ...+..+.+.++..... ..-...+... ++++||.+.+|..
T Consensus 267 ~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~--~~~~~~~l~~-l~~~Gi~~~~g~~ 343 (377)
T 3e77_A 267 NNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGD--DALEKRFLDK-ALELNMLSLKGHR 343 (377)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCC--HHHHHHHHHH-HHHTTEESCBCCT
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCc--hhHHHHHHHH-HHHCCcEEeCCCC
Confidence 3 36778888999999999999987 776422 12344455677653210 0011245566 4468999988763
Q ss_pred cCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 299 CHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
. .+.+|+|+.. .|++|++.+++.|+++++++
T Consensus 344 ~----~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 344 S----VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp T----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred c----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2 3569999986 59999999999999999876
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-22 Score=175.32 Aligned_cols=281 Identities=8% Similarity=0.024 Sum_probs=188.4
Q ss_pred hhhhcCCCCCCC-CcEEE-ecCcHHHHHHHHHHhcCCCCeEEecCCCCCCh--hhhhhhccCcEEEEEeCC-CCCCcccc
Q 019899 6 SQVLGQAVSFDP-SQIVL-TAGATPAVEILCFCLADHGNALLVPSPYYPGF--DRDIRFRTGVELIPVHCR-STDNFAFS 80 (334)
Q Consensus 6 ~~~~~~~~~~~~-~~i~~-~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~--~~~~~~~~g~~v~~v~~~-~~~~~~~~ 80 (334)
++.+++.++++. ++|++ |+|+|+++++++..+.++||+|++..-.+.+. ...++ ..| ++..++++ ++++..++
T Consensus 78 r~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~-~~G-~v~~v~~~~~~~G~~~~ 155 (386)
T 3qm2_A 78 EQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAK-KYC-APQIIDAKITVDGKRAV 155 (386)
T ss_dssp HHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHT-TTS-EEEEEECEEEETTEEEE
T ss_pred HHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHH-HhC-CeEEEecCcccCCCCCC
Confidence 344444555654 47888 68999999999999999999987554433332 22334 578 89888873 12443477
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNI-IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
++++++++++ ++++|.+++..|.||++ .| +++|. +|+++++|.+++. +..+.++..
T Consensus 156 ~~~~~~~l~~------~t~lV~~~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs~----g~~pidv~~----- 212 (386)
T 3qm2_A 156 KPMREWQLSD------NAAYLHYCPNETIDGIAIDE---TPDFG-----PEVVVTADFSSTI----LSAPLDVSR----- 212 (386)
T ss_dssp CCGGGCCCCT------TCSCEEECSEETTTTEECCC---CCCCC-----TTCCEEEECTTTT----TSSCCCGGG-----
T ss_pred chHHHhhcCC------CCcEEEEECCcCCcCEecCc---hhhhc-----CCCEEEEEccccc----CCCCCCccc-----
Confidence 8888777765 78999999888999996 77 44443 7999999999875 333344432
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHH--------------HHHHhhcccCCChHHHHHHHHhhCChHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLA--------------AAKKLTRFCSISAPTQRLLISMLSDTKFIQ 225 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (334)
.+ +++.|.+|++|++| +|+++. ++++.+ ..+....+++.+.....++..+++. +.
T Consensus 213 ---~~--~~~~s~hK~lGP~G--~g~l~v-~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~---~~ 281 (386)
T 3qm2_A 213 ---YG--VIYAGAQKNIGPAG--LTLVIV-REDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKW---LK 281 (386)
T ss_dssp ---CS--EEEEETTTTTCCTT--EEEEEE-EGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHH---HH
T ss_pred ---cC--EEEEecccccCCCc--cEEEEE-CHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHH---HH
Confidence 33 35689999998677 688877 333321 1111122345666677777776643 23
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHhCCCc-cc-CC--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 226 E--YLETNKRRIKKLYDSFVAGLKQLGIR-CS-ES--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 226 ~--~~~~~~~~~~~~~~~~~~~l~~~g~~-~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
+ -+++..++.++.++++.+.|++.++. .. .+ ..+..+.+.+|.. ..+ .++... ++++||.+.+|..+
T Consensus 282 ~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~-----~~~-~~~~~~-L~~~gI~~~~g~~~ 354 (386)
T 3qm2_A 282 AQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADN-----TLD-KVFLEE-SFAAGLHALKGHRV 354 (386)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSG-----GGH-HHHHHH-HHHTTEECCBCCTT
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCc-----ccc-HHHHHH-HHHCCCEEeCCCCC
Confidence 3 36778888999999999999988762 21 11 2233455666641 012 456666 66789999887654
Q ss_pred CCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 300 HCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 300 ~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.+|+|+.. .|++|++++++.|+++.+++
T Consensus 355 ----~~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 355 ----VGGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp ----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2459999986 59999999999999999876
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=178.66 Aligned_cols=291 Identities=10% Similarity=0.011 Sum_probs=176.2
Q ss_pred CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc---------cHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF---------SITALDQAF 88 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~---------~~~~l~~~l 88 (334)
..+++++|++.|+.+++.+++++||+|+++.++|.++...+. ..|+++++++... +.+++ |++++++++
T Consensus 212 ~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~-lsGa~pv~v~~~~-~~~gi~~~i~~~~~d~e~Le~~l 289 (715)
T 3n75_A 212 RSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMM-MSDVTPIYFRPTR-NAYGILGGIPQSEFQHATIAKRV 289 (715)
T ss_dssp EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-HSCCEEEEECCCB-CTTCCBCCCCGGGGSHHHHHHHH
T ss_pred CceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHH-HcCCEEEEEeccc-cccccccCcccccCCHHHHHHHH
Confidence 346677777899999999999999999999999999999998 8999999998753 34443 899999999
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcE-
Q 019899 89 NQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRV- 166 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 166 (334)
++... .+.++++++++| ||+|.+++ +++|.++|++++ +++||+|+... +.+ .......+.. +...+.+
T Consensus 290 ~~~~~-~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~~f~~-~~~~~~al~~--g~~aD~vi 359 (715)
T 3n75_A 290 KETPN-ATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSP-IYEGKCGMSG--GRVEGKVI 359 (715)
T ss_dssp HHSTT-CCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTGGGSG-GGTTSSTTSS--SCCTTCEE
T ss_pred hhCcC-ccCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEccccccccccCC-cccccccccc--CcCCCEEE
Confidence 86310 112348999999 99999999 788888887663 78999998643 321 1111111110 0002333
Q ss_pred EEEecccccCCCCCceEEEEeecCHHHHHHHHHh---hcccCCChHHHHHHHHhhCChHHHH-HHHHHHHHHHHHHHHHH
Q 019899 167 HIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL---TRFCSISAPTQRLLISMLSDTKFIQ-EYLETNKRRIKKLYDSF 242 (334)
Q Consensus 167 ~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 242 (334)
+++.|+||+++.. -..|++.++++-..+.+.+. ....+++.+...++..+++. ++ ....++.+++.++.+++
T Consensus 360 i~~~S~hKtL~gl-tqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~---~~~~~g~~~~~~l~~~a~~~ 435 (715)
T 3n75_A 360 YETQSTHKLLAAF-SQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAM---MKGNAGKRLINGSIERAIKF 435 (715)
T ss_dssp EEEECHHHHSSCC-TTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHH---HSHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccccCC-CCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHH
Confidence 5689999998522 12477777443222233322 22233444444444444321 12 12244566677777777
Q ss_pred HHHHHhC-----C--CcccCCC-----------------------ceeE------EeeecCCcC-CC---CChhhHHHHH
Q 019899 243 VAGLKQL-----G--IRCSESS-----------------------AGLY------CWADMSGLI-PS---YSEKGELELW 282 (334)
Q Consensus 243 ~~~l~~~-----g--~~~~~~~-----------------------~g~~------~~~~~~~~~-~~---~~~~~~~~~~ 282 (334)
++.|++. + +++..++ .+.+ +.+.+++.. ++ .....+.++.
T Consensus 436 r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~ 515 (715)
T 3n75_A 436 RKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVA 515 (715)
T ss_dssp HHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHH
T ss_pred HHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHH
Confidence 7777654 1 2222211 0111 223333211 00 0123445666
Q ss_pred HHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 283 DKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 283 ~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
+. |+++||.+.-.. ..++-+-++. .+++++++++++|.++-+
T Consensus 516 ~~-L~~~~I~~E~~d------~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 516 KY-LDEHGIVVEKTG------PYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp HH-HHHTTCCCSEEE------TTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHCCCEEEecC------CCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 66 567899875322 2344444442 688899999999887754
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-19 Score=157.39 Aligned_cols=306 Identities=15% Similarity=0.191 Sum_probs=199.8
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCC----CCeEEecCCCCCChhhhhhhccCcEEEEEeCC-CCCCc
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADH----GNALLVPSPYYPGFDRDIRFRTGVELIPVHCR-STDNF 77 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~----gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~-~~~~~ 77 (334)
+|++.. | ++ .....++++|+|.++.+++.+.+++ +|+|++|..+|.+...++. +.|+++++++.. +++..
T Consensus 124 d~L~~~-G--~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAli-L~Gl~Pv~V~p~~d~~~~ 198 (501)
T 3hl2_A 124 DIIKLA-G--VH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI-TAGFEPVVIENVLEGDEL 198 (501)
T ss_dssp HHHHHT-T--CT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-HTTCEEEEECEEEETTEE
T ss_pred HHHHHc-C--CC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHH-HcCCeEEEEeeeeccccc
Confidence 567763 3 43 2346999999998888887777653 4999999999999999999 999999999852 23457
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
.+|++.++++|++. +....++++++| .|-.+.+.+ +++|.++|++||+++++|++|+... ..+..+.
T Consensus 199 ~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~------~~~~~lp 266 (501)
T 3hl2_A 199 RTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQS------SKCMHLI 266 (501)
T ss_dssp EECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTC------HHHHHHH
T ss_pred CCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhh------hhhhhhH
Confidence 89999999999986 212333444444 554556677 9999999999999999999997632 1111111
Q ss_pred hccccCCC-cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCC-ChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 157 EAEEVDKD-RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSI-SAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 157 ~~~~~~~~-~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
.+ .+..+ .++++.|.+|.+- ..+..+.+..+++++.+.+... .+++. +.++...+..++..+ .+.+.++.++
T Consensus 267 ~s-A~~~GrAD~vVqS~HK~ll-vpIGG~ii~~~d~e~l~~~~~~-yPGr~S~Spsldl~~tLL~lG---r~Gy~~ll~e 340 (501)
T 3hl2_A 267 QQ-GARVGRIDAFVQSLDKNFM-VPVGGAIIAGFNDSFIQEISKM-YPGRASASPSLDVLITLLSLG---SNGYKKLLKE 340 (501)
T ss_dssp HH-HHHHSCCCEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHHT-SCSCBCSHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HH-HHhcCCCcEEEecccccce-eecCceEEEeCCHHHHHHHHHh-CCCCCCCcHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 11 11134 6678889999984 4344566666788877776432 22222 333333344443322 4445777777
Q ss_pred HHHHHHHHHHHHHhC----CCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe---E-EcCCC--------
Q 019899 235 IKKLYDSFVAGLKQL----GIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI---N-VTPGS-------- 297 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~----g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~-v~~g~-------- 297 (334)
..++.+++.+.|+++ |-++.. +.+...+.+.+...... .......+-..|+. ++| . |.+|.
T Consensus 341 ~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~-~~~~~t~~gs~Lf~-r~vsG~Rvv~~~~~~~i~g~~ 418 (501)
T 3hl2_A 341 RKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEH-RDKAVTQLGSMLFT-RQVSGARVVPLGSMQTVSGYT 418 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT-TSCHHHHHHHHHHH-TTCCSCEEECTTCCEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccccc-ccccHHHHHHHHHh-cCCCcceeecCCCceEECCee
Confidence 888888888888774 555543 33555665666544221 11223345555444 565 2 44555
Q ss_pred --CcCCCC----CCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 298 --ACHCIE----PGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 298 --~~~~~~----~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.||... ..|+-++.+- ++.+|++.++++|.+++.+.
T Consensus 419 f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~ 461 (501)
T 3hl2_A 419 FRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAV 461 (501)
T ss_dssp ESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 444421 2578777653 79999999999999998763
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=164.93 Aligned_cols=279 Identities=11% Similarity=0.130 Sum_probs=185.7
Q ss_pred hhhhcCCCCCC-CCcEEE-ecCcHHHHHHHHHHhcCCCCeEEe-cCCCCCC-hhhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 6 SQVLGQAVSFD-PSQIVL-TAGATPAVEILCFCLADHGNALLV-PSPYYPG-FDRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 6 ~~~~~~~~~~~-~~~i~~-~~g~~~~~~~~~~~l~~~gd~vl~-~~p~~~~-~~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++.+++.++++ +++|++ |+|+|+++++++..+. +||++++ .+..|.. ....++ ..|.++..++++....+.+++
T Consensus 56 r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~-~~G~~v~~~~~~~~g~~~~~~ 133 (361)
T 3m5u_A 56 QEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQ-ILGVNVKTVASSEESNFDHIP 133 (361)
T ss_dssp HHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHH-HTTCCEEEEEECTTTTSCSCC
T ss_pred HHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHH-HcCCceEEEecccCcCCCcCC
Confidence 33444445565 347887 9999999999999998 7886532 2222221 222344 578999999975332222445
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+. + |++ ++++|.+++..|.||.+++. +++ +|+++++|.+++. +....++.
T Consensus 134 ~~-~--l~~------~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~~----g~~~id~~-------- 183 (361)
T 3m5u_A 134 RV-E--FSD------NADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDASSDF----FSRKVDFS-------- 183 (361)
T ss_dssp CC-C--CCT------TSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECGGGT----TSSCCCCT--------
T ss_pred hh-h--cCC------CCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEccccc----CCCCCCcc--------
Confidence 54 3 654 78999999888999999772 233 4999999999875 22223332
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH---------------hhcccCCChHHHHHHHHhhCChHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK---------------LTRFCSISAPTQRLLISMLSDTKFIQE 226 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (334)
+.++++.|.+|++|++| +|+++. ++++.+.++. ...+++++.....++..+++ ++.+
T Consensus 184 --~~d~~~~s~~K~~gp~G--~g~l~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~---~l~~ 255 (361)
T 3m5u_A 184 --NIALFYGGVQKNAGISG--LSCIFI-RKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMD---WLLN 255 (361)
T ss_dssp --TEEEEEEETTTTSSCTT--CEEEEE-EHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH---HHHT
T ss_pred --cCCEEEEechhccCCCc--cEEEEE-cHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHH---HHHH
Confidence 23477889999998777 688887 6777665543 11224556666666666654 2233
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHhCC-C-cccCC---CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 227 Y--LETNKRRIKKLYDSFVAGLKQLG-I-RCSES---SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 227 ~--~~~~~~~~~~~~~~~~~~l~~~g-~-~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
. +++..++.++..+++.+.|++++ + ....+ ..+..+.+.+|.... .+ .++... ++++||.+.+|...
T Consensus 256 ~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~----~~-~~~~~~-L~~~gI~~~~g~~~ 329 (361)
T 3m5u_A 256 QGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKD----LE-PLFVKE-AEEAGMIGLKGHRI 329 (361)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTT----HH-HHHHHH-HHHTTEECCBCCTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchh----hh-HHHHHH-HHHCCCEEecCCCc
Confidence 2 57778888999999999999886 5 44322 123345566664111 12 356655 66789999887652
Q ss_pred CCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 300 HCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 300 ~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
.+.+|+|+.. .|++|++++++.|+++.++++
T Consensus 330 ----~g~iRiS~~~~~t~edId~l~~al~~~~~~~~ 361 (361)
T 3m5u_A 330 ----LGGIRASIYNALNLDQVKTLCEFMKEFQGKYA 361 (361)
T ss_dssp ----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred ----cCeEEEEccCCCCHHHHHHHHHHHHHHHHhcC
Confidence 2459999986 599999999999999998864
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-19 Score=158.51 Aligned_cols=279 Identities=16% Similarity=0.099 Sum_probs=173.5
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhc-----cCcEEEEEeCCCCCCccccHHHHHHHH
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFR-----TGVELIPVHCRSTDNFAFSITALDQAF 88 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~-----~g~~v~~v~~~~~~~~~~~~~~l~~~l 88 (334)
..+.+++++++++|+..++.... ...++|+....+|.+........ .......+|. .|++.+++.+
T Consensus 142 ~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l 214 (454)
T 4ao9_A 142 QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQI 214 (454)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHH
Confidence 46789999999999999987653 34568888888887654332201 1123334442 3788999988
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc-chhhhhhhccccCCCcE
Q 019899 89 NQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF-VSMAEILEAEEVDKDRV 166 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 166 (334)
++. +.++.+|++...+...|.+. +.+.+++|.++|++||+++|+||++.+ ..|..+ .....+ .+|
T Consensus 215 ~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv------~PD-- 281 (454)
T 4ao9_A 215 ERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANKLGI------RSD-- 281 (454)
T ss_dssp HHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTC------CCS--
T ss_pred hhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhccCC------CCc--
Confidence 763 23566555543366777765 566799999999999999999999874 222222 122222 122
Q ss_pred EEEecccccCCCCCceEEEEeecCHHHHHHHHHh------hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 167 HIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL------TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 167 ~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
+.+++|.+| .|+++|.+++ ++++.+.+... ..+++.|+.+..+..+.++..+. .+..+++.++.+
T Consensus 282 --i~t~gK~lg-gG~Piga~~~-~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-----~~~~~~~~~~g~ 352 (454)
T 4ao9_A 282 --LTTLGKYIG-GGMSFGAFGG-RADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-----PEAAGALAERGE 352 (454)
T ss_dssp --EEEEEGGGG-TTSSCEEEEE-CHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-----HHHHHHHHHHHH
T ss_pred --EEEeccccC-CCCcceeeee-HHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-----cChhHHHHHHHH
Confidence 236889998 8899999998 88888877532 23456788888777666643210 122334444445
Q ss_pred HHHHHHHh----CCCcccCCCceeEEeeecCCc-CCC------CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEE
Q 019899 241 SFVAGLKQ----LGIRCSESSAGLYCWADMSGL-IPS------YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRC 309 (334)
Q Consensus 241 ~~~~~l~~----~g~~~~~~~~g~~~~~~~~~~-~~~------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi 309 (334)
++.+.|++ .++......-|.++.+.+.+. ... ....-...+...|++ +||.+.|.. ++.+
T Consensus 353 ~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~Gv~~~p~~--------~~~~ 423 (454)
T 4ao9_A 353 ALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN-EDIYSSPRG--------FVVL 423 (454)
T ss_dssp HHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH-TTEECCTTC--------EEEC
T ss_pred HHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH-CCEEEcCCC--------CEEE
Confidence 55555544 343322122233444444321 111 111122345566555 799987733 3444
Q ss_pred EecCCCcccHHHHHHHHHHHHHHc
Q 019899 310 CFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 310 ~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
++. .|++||+++++++.++++++
T Consensus 424 s~~-~T~~dId~~l~al~~~l~~~ 446 (454)
T 4ao9_A 424 SLP-LTDADIDRYVAAIGSFIGGH 446 (454)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHHS
T ss_pred eCC-CCHHHHHHHHHHHHHHHHhc
Confidence 544 79999999999999999875
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-18 Score=151.03 Aligned_cols=288 Identities=14% Similarity=0.122 Sum_probs=186.1
Q ss_pred CCCCCCC----cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh--------hhccC--cEEEEEeCCCCCCc
Q 019899 12 AVSFDPS----QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI--------RFRTG--VELIPVHCRSTDNF 77 (334)
Q Consensus 12 ~~~~~~~----~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~--------~~~~g--~~v~~v~~~~~~~~ 77 (334)
.|+++.. ||-+-+ +++|+..++.++++|||+|+-.+..++++...- . ..| .+++.+++++ +..
T Consensus 112 lF~a~~A~w~VNVQP~S-Gs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~-~sg~~~~~~~Y~vd~-~t~ 188 (490)
T 3ou5_A 112 AFDLDPAQWGVNVQPYS-GSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRIS-ATSIFFESMPYKLNP-KTG 188 (490)
T ss_dssp HTTCCTTTEEEECCCSS-HHHHHHHHHHHHCC-CCCEECBC-----------------------------CBCEET-TTT
T ss_pred HhCCCccccCCCCCcCC-HHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccc-cccccccccccccCC-CCC
Confidence 3555555 455444 556999999999999999999988777664432 1 122 2444555543 455
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc-ccCCCCcchhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS-IFGNEEFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~-~~~~~~~~~~~~~~ 156 (334)
.+|.+++++..+.. +|++|++-...+| ..+| .+++.++|++.|.++++|-+|... .-+|.-+.++ +
T Consensus 189 ~IDyd~~~~~A~~~-----kPklIi~G~SaY~--r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~-~-- 255 (490)
T 3ou5_A 189 LIDYNQLALTARLF-----RPRLIIAGTSAYA--RLID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF-K-- 255 (490)
T ss_dssp EECHHHHHHHHHHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG-G--
T ss_pred cccHHHHHHHHhhc-----CCCeEEECCccCc--cccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCcc-c--
Confidence 89999999999887 9997777665665 5677 788888888999999999998543 3333222222 1
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCH--------------HHHHHHHHhhcc-cCCChHHHHHHHHhhCCh
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE--------------SVLAAAKKLTRF-CSISAPTQRLLISMLSDT 221 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 221 (334)
. .+++.+|.+|++ .|.|.|.|++++. ++.+.+.+.-.+ ...+++....++.+....
T Consensus 256 ------~-ADvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~ 326 (490)
T 3ou5_A 256 ------H-ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALK 326 (490)
T ss_dssp ------T-CSEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHH
T ss_pred ------c-ceEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHH
Confidence 2 357788999999 7778899998542 455666654333 233444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc----CC
Q 019899 222 KFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT----PG 296 (334)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g 296 (334)
+.+...+..+.+++.++++.|.+.|.+.|++++ ....+..+++++..... +. ..+..+|++.||.+. |+
T Consensus 327 Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~-----tG-~~ae~~Le~agItvNkN~iP~ 400 (490)
T 3ou5_A 327 QACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGL-----DG-ARAERVLELVSITANKNTCPG 400 (490)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC-----CH-HHHHHHHHHTTEECEEECCTT
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCC-----CH-HHHHHHHHHcCcEECCCCCCC
Confidence 444556688899999999999999999999986 44456667788754321 22 445555888999875 44
Q ss_pred CCcCCCCCCeEEEEecC-----CCcccHHHHHHHHHHHHH
Q 019899 297 SACHCIEPGWFRCCFTS-----LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~~-----~~~~~l~~~l~~l~~~~~ 331 (334)
. -.+-.++.|||+... ..++|++++.+.|.+++.
T Consensus 401 D-~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 401 D-RSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp C-CCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3 122235689999653 467888888888877664
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=147.52 Aligned_cols=307 Identities=15% Similarity=0.159 Sum_probs=186.0
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCC----CCeEEecCCCCCChhhhhhhccCcEEEEEeCCC-CCCc
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADH----GNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS-TDNF 77 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~----gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~-~~~~ 77 (334)
.|+.+.+| ++ +....++++|+|.+.++++.+.+++ ++.|+++..+|.++..++. ..|..++.++... ++..
T Consensus 105 ~~~~~~lG--lp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~-l~Gl~p~~v~~~~~~~~~ 180 (450)
T 3bc8_A 105 LNVIKLAG--VH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV-TAGFEPVVIENVLEGDEL 180 (450)
T ss_dssp HHHHHHHT--CT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-HTTCEEEEECCEEETTEE
T ss_pred HHHHHhCC--CC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHH-HcCCeeEEEEeeecCccC
Confidence 45555555 33 2335699999986665555554443 8999999999999999999 9999998887532 3467
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
.+|++.|+++|++... ...++++++| ++.+|.+.| +++|+++|++||++++||++|+.... ....+.
T Consensus 181 ~id~~~le~aI~~~~~---~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~~------~~~~l~ 248 (450)
T 3bc8_A 181 RTDLKAVEAKIQELGP---EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSS------KCMHLI 248 (450)
T ss_dssp ECCHHHHHHHHHHHCG---GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCH------HHHHHH
T ss_pred CcCHHHHHHHHHhcCC---CCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchhhh------hhHhHH
Confidence 8999999999987521 2345666667 556778888 99999999999999999999985321 122221
Q ss_pred hccccC-CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 157 EAEEVD-KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 157 ~~~~~~-~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
.+ .++ .+-+.++.|.+|++. .....+++..++++..+.+...-.....+.++......++.. ..+.+.+..++.
T Consensus 249 ~~-a~~~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~---G~~g~~~~i~~~ 323 (450)
T 3bc8_A 249 QQ-GARVGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSL---GCSGYRKLLKER 323 (450)
T ss_dssp HH-HHHHSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HH-HhcccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 10 000 244567789999986 445567777678877766644221112334444444444322 233345555555
Q ss_pred HHHHHHHHHHHHhC----CCcccCCC-ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcC---eEEcC-C-------CC-
Q 019899 236 KKLYDSFVAGLKQL----GIRCSESS-AGLYCWADMSGLIPSYSEKGELELWDKLLNIAK---INVTP-G-------SA- 298 (334)
Q Consensus 236 ~~~~~~~~~~l~~~----g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g---i~v~~-g-------~~- 298 (334)
.++++++.+.|++. |.++...+ .+.-..+.++... .....|...+.-.+.. .| ..+.+ | ..
T Consensus 324 ~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~-~~~~~D~tkl~i~~~~-~g~sG~~v~~~~~~~~~~~~~l 401 (450)
T 3bc8_A 324 KEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTID-GHHDKAVTQLGSMLFT-RQVSGARAVPLGNVQTVSGHTF 401 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTS-SSSSCHHHHHHHHHHH-TTCCSCEEECSCCEEEETTEEE
T ss_pred HHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccc-ccccCCCceeEEEecC-CCCccceeeecccccchhHHHH
Confidence 66667777777553 66555332 1111112232211 1111244455554333 34 33331 1 11
Q ss_pred --cCC----CCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 299 --CHC----IEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 299 --~~~----~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
|+. ....++-+.++. .+++++++++++|+++.++
T Consensus 402 ~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~ 442 (450)
T 3bc8_A 402 RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 442 (450)
T ss_dssp ETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 111 123566665553 6999999999999998654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-17 Score=146.82 Aligned_cols=296 Identities=17% Similarity=0.113 Sum_probs=183.5
Q ss_pred CCcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhcc-------------CcEEEEEeCCCC----CCc
Q 019899 17 PSQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRT-------------GVELIPVHCRST----DNF 77 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~-------------g~~v~~v~~~~~----~~~ 77 (334)
.+.+++++++++|+..++... .....+|+....+|.+......-.. ...+..+|..+. ...
T Consensus 125 ~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~ 204 (456)
T 4atq_A 125 AKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPE 204 (456)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTT
T ss_pred CcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCc
Confidence 457999999999999998764 2355688888888876543211011 123555554221 112
Q ss_pred cccHHHHHHHHHHHHH--cCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhh
Q 019899 78 AFSITALDQAFNQARK--RGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAE 154 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~--~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~ 154 (334)
..+.+.+++.++.... .+.++.+|++...+...|.+. +.+.++++.++|++||+++|+||++.++...|..+.. ..
T Consensus 205 ~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~-e~ 283 (456)
T 4atq_A 205 ITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAV-DH 283 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GG
T ss_pred ccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccc-cc
Confidence 2345555555544332 223566555554466778765 5668999999999999999999999987655543321 11
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
. +..+| +.+++|.+| .|+++|.+++ ++++.+.+.. +..+|+.|+.+..++.+.++..+ + +.+.
T Consensus 284 ~----gv~PD----ivt~gK~lg-gg~P~~av~~-~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~--~---~~l~ 348 (456)
T 4atq_A 284 E----GVVPD----IITMAKGIA-GGLPLSAITG-RADLLDAVHPGGLGGTYGGNPVACAAALAAIDTME--Q---HDLN 348 (456)
T ss_dssp T----TCCCS----EEEECGGGG-TTSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH--H---TTHH
T ss_pred c----CCCCc----hhhhhhccc-CcCCceeeEe-cHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHh--h---ccHH
Confidence 1 11122 346789998 8899999998 7888777653 34567789988888888775432 1 1223
Q ss_pred HHHHHHHHHHHHHHHhC----C---CcccC--CCceeEEeeecCCcCCC-CChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 233 RRIKKLYDSFVAGLKQL----G---IRCSE--SSAGLYCWADMSGLIPS-YSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~----g---~~~~~--~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
++.++.-+++.+.|+++ . ..++. ..-|+++.+++..+... ........+...+++ +|+.+.++..
T Consensus 349 ~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~---- 423 (456)
T 4atq_A 349 GRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGT---- 423 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECT----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCC----
Confidence 33444444444444432 1 11111 11255666776543221 122334456777555 8999876432
Q ss_pred CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 ~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+.+|+...- ++++++++++++|.++++.+
T Consensus 424 ~~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 424 YGNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 24679998764 69999999999999999864
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-16 Score=143.13 Aligned_cols=292 Identities=16% Similarity=0.172 Sum_probs=177.6
Q ss_pred CCCCCCCcEEEecCcHHHHHHHHHHhc--------CCCCeEEecCCCCCChhhh-hhhccC-----------cEEEEEeC
Q 019899 12 AVSFDPSQIVLTAGATPAVEILCFCLA--------DHGNALLVPSPYYPGFDRD-IRFRTG-----------VELIPVHC 71 (334)
Q Consensus 12 ~~~~~~~~i~~~~g~~~~~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~-~~~~~g-----------~~v~~v~~ 71 (334)
..+.+.+.+++++++++|+..++.... ....+|+....+|.+.... +. ..| ..+..++.
T Consensus 123 ~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s-~tg~~~~~~~~~~~~~~~~~~~ 201 (473)
T 4e3q_A 123 VSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSAS-MTGKPYNSVFGLPLPGFVHLTC 201 (473)
T ss_dssp HSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHH-HSCCGGGGGGTCSCTTEEEECC
T ss_pred hCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccc-ccccccccccCCCCCcccccCC
Confidence 344556799999999999999987642 1235788888888763322 21 111 12333333
Q ss_pred CCC----CCcc-------ccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCC-HHHHHHHHHHHHhcCcEEEEecc
Q 019899 72 RST----DNFA-------FSITALDQAFNQARKRGVKVRGILICNP-ANPVGNIIP-RETLYELLDFAREKNIHVISDEI 138 (334)
Q Consensus 72 ~~~----~~~~-------~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~vi~D~~ 138 (334)
++. .... ...+++++.+.+. ...++. .++..| +...|++.+ .+.++++.++|++||+++|.||+
T Consensus 202 p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iA-avi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV 278 (473)
T 4e3q_A 202 PHYWRYGEEGETEEQFVARLARELEETIQRE--GADTIA-GFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEV 278 (473)
T ss_dssp CCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEE-EEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECT
T ss_pred CcccccccccchhhHHHHHHHHHHHHHHHhh--CCCceE-EEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCc
Confidence 210 0000 1223444544432 112344 455555 777787654 56799999999999999999999
Q ss_pred ccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh---------hcccCCCh
Q 019899 139 YGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL---------TRFCSISA 208 (334)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~---------~~~~~~~~ 208 (334)
+.+|...|..+..- .. +..+| +.+++|.++ .| +++|.+++ ++++.+.+... ..+++.|+
T Consensus 279 ~tGfGRtG~~fa~e-~~----gv~PD----i~t~~K~l~-gG~~Pl~av~~-~~~i~~~~~~~~~~~~~~~hg~T~~Gnp 347 (473)
T 4e3q_A 279 ICGFGRTGNTWGCV-TY----DFTPD----AIISSKNLT-AGFFPMGAVIL-GPELSKRLETAIEAIEEFPHGFTASGHP 347 (473)
T ss_dssp TTSSSTTSSSCHHH-HT----TCCCS----EEEECGGGG-TTSSCCEEEEE-CHHHHHHHHHHHHHHSCCCCCCTTTTCH
T ss_pred cccCCcccchhHHH-hc----CCCCC----hHHhccccc-CCCCCcccccc-cHHHHHHhccccccccccccCCCCCCCc
Confidence 99876655543221 11 11122 335889998 66 89999998 88988887542 23467788
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCceeEEeeecCCcCCCC-----ChhhHH
Q 019899 209 PTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----GIRCSESSAGLYCWADMSGLIPSY-----SEKGEL 279 (334)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~ 279 (334)
.+..++.+.++..+ + +...+++++.-+++.+.|+++ .+.-+.. -|+++.+++.+..... ......
T Consensus 348 la~Aaala~L~~i~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG-~Gl~~gielv~~~~~~~~~~~~~~~~~ 421 (473)
T 4e3q_A 348 VGCAIALKAIDVVM--N---EGLAENVRRLAPRFEERLKHIAERPNIGEYRG-IGFMWALEAVKDKASKTPFDGNLSVSE 421 (473)
T ss_dssp HHHHHHHHHHHHHH--H---SSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHH
T ss_pred chhhhhhhhhhhhc--c---ccHHHHHHHHHHHHHHHHHHHhcCCCeeEEee-cceEEEEEEecCccccccccccHHHHH
Confidence 88888777775432 1 223444555566666666654 1111111 2445556654332211 112234
Q ss_pred HHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 280 ELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 280 ~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.+...++ ++|+.+.|.. +.+|++.+. +++++++++++++.+++++
T Consensus 422 ~~~~~~~-~~Gll~~~~g-------~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 422 RIANTCT-DLGLICRPLG-------QSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp HHHHHHH-HTTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HCCcEEEecC-------CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5666644 5899987632 468888664 6999999999999998876
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=158.38 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=139.0
Q ss_pred HHHHHHHHHHH--HcCCceeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 82 TALDQAFNQAR--KRGVKVRGILICNP-ANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 82 ~~l~~~l~~~~--~~~~~~~~i~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
+.|++.|++.. .+..++.+|++... ++..|.+. |.+.+++|.++|++||+++|+||++.+|...|..+. ....
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa-~e~~-- 653 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETT-TELL-- 653 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSST-HHHH--
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchh-hHhc--
Confidence 45666665321 12235665655543 68888765 777899999999999999999999998766665442 1111
Q ss_pred ccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHH--------hhcccCCChHHHHHHHHhhCChHH--HHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKK--------LTRFCSISAPTQRLLISMLSDTKF--IQE 226 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~--~~~ 226 (334)
+..++ +.+++|.++ .| +++|++++ ++++.+.+.. +...++.++..+.++.+.++..+. +.+
T Consensus 654 --gv~PD----iitlsK~L~-gG~~Plgav~~-~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~ 725 (831)
T 4a0g_A 654 --GCKPD----IACFAKLLT-GGMVPLAVTLA-TDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNH 725 (831)
T ss_dssp --SSCCS----EEEECGGGG-TTSSCCEEEEE-CHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCT
T ss_pred --CCCCc----EEEEecccc-cCccCcEEEEE-CHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHH
Confidence 12122 237999998 67 79999999 8898888754 223456788888777776642110 001
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCC-cccCCCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 227 YLETNKRRIKK-LYDSFVAGLKQLGI-RCSESSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 227 ~~~~~~~~~~~-~~~~~~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
...+..+++++ ..+.+.+.+.+.+. ..+.. .|.+..+++..... ........++...++ ++||.+.|+
T Consensus 726 ~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gv~v~p~------ 797 (831)
T 4a0g_A 726 NITSQGKTLRELWDEELVQQISSHSAVQRVVV-IGTLFALELKADASNSGYASLYAKSLLIMLR-EDGIFTRPL------ 797 (831)
T ss_dssp TBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE-ETTEEEEEEC---------CHHHHHHHHHHH-HTTEECCCB------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCceeEee-cccEEEEEEecCccccccchHHHHHHHHHHH-HCCcEEEec------
Confidence 11111111111 01223444554432 22222 35556566643211 011123456777754 589999874
Q ss_pred CCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 303 EPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 303 ~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.+|++... ++++++++++++|.+++++.
T Consensus 798 -g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 798 -GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp -TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2589999664 69999999999999998764
|
| >2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.79 E-value=3.8 Score=30.19 Aligned_cols=120 Identities=15% Similarity=0.183 Sum_probs=72.9
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCc--HHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGA--TPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
.|++..++.+..++...++++-+- ...+.-+...+.+-|-+++.+..+ ...++ ..|.++..|.-..+++..-+
T Consensus 10 A~~Ka~~aag~~lP~~gvliSv~d~dK~~l~~~a~~l~~lGf~i~AT~GT----a~~L~-~~Gi~v~~v~k~~egg~~~~ 84 (143)
T 2yvq_A 10 AFLKAMLSTGFKIPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEAT----SDWLN-ANNVPATPVAWPSQEGQNPS 84 (143)
T ss_dssp HHHHHHTSCSCCCCCSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHH----HHHHH-HTTCCCEEECCGGGC-----
T ss_pred HHHHHHHhcCCCCCCCCEEEEecccchHHHHHHHHHHHHCCCEEEECchH----HHHHH-HcCCeEEEEEeccCCCcccc
Confidence 456666665566655557776665 555555666776778777776643 44555 67888887763222211001
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEe
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISD 136 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D 136 (334)
...+.+.|++ +++.+ ++..|. +...+..+-..|...|-+|+++++..
T Consensus 85 ~~~i~d~i~~-----g~i~l-VInt~~---~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 85 LSSIRKLIRD-----GSIDL-VINLPN---NNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp CBCHHHHHHT-----TSCCE-EEECCC---CCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred cccHHHHHHC-----CCceE-EEECCC---CCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 1246677776 37774 444443 21233667889999999999999844
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.46 E-value=2.5 Score=35.04 Aligned_cols=102 Identities=14% Similarity=0.275 Sum_probs=60.9
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++=.. ...|.+.|-+|++..-.-.......+ ..|.+...+.++ --|.+++++.++....+-+
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~-~~g~~~~~~~~D-----v~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA-EIGGGAVGIQAD-----SANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHCTTCEEEECC-----TTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HcCCCeEEEEec-----CCCHHHHHHHHHHHHHHcC
Confidence 4577777777788444 55567888888776543333333444 445555566542 2356777777766655545
Q ss_pred ceeEEEEeCC-CCCccc--CCCHHHHHHHHHHH
Q 019899 97 KVRGILICNP-ANPVGN--IIPRETLYELLDFA 126 (334)
Q Consensus 97 ~~~~i~~~~p-~nptG~--~~~~~~l~~i~~~~ 126 (334)
++. ++++|. .++.+- -++.++++++.++-
T Consensus 103 ~iD-iLVNNAG~~~~~~~~~~~~e~w~~~~~vN 134 (273)
T 4fgs_A 103 RID-VLFVNAGGGSMLPLGEVTEEQYDDTFDRN 134 (273)
T ss_dssp CEE-EEEECCCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred CCC-EEEECCCCCCCCChhhccHHHHHHHHHHH
Confidence 788 555554 333333 34677888887743
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=82.31 E-value=7.1 Score=31.87 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=60.8
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhh---hhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRD---IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~---~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+.+++.+|++.++=.. ...|.+.|-+|++..-.-...... ++ ..|.++..+.++ --|.+++++.++....
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~-~~g~~~~~~~~D-----vt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR-GMGKEVLGVKAD-----VSKKKDVEEFVRRTFE 80 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTCCEEEEECC-----TTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCcEEEEEcc-----CCCHHHHHHHHHHHHH
Confidence 4577777777788544 445567888887765432222222 22 356677777653 2356777777776655
Q ss_pred cCCceeEEEEeCC--CCCccc--CCCHHHHHHHHHH
Q 019899 94 RGVKVRGILICNP--ANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 94 ~~~~~~~i~~~~p--~nptG~--~~~~~~l~~i~~~ 125 (334)
+-+++. ++++|. ..+.+. -++.++++++.++
T Consensus 81 ~~G~iD-iLVNNAGi~~~~~~~~~~~~e~~~~~~~v 115 (254)
T 4fn4_A 81 TYSRID-VLCNNAGIMDGVTPVAEVSDELWERVLAV 115 (254)
T ss_dssp HHSCCC-EEEECCCCCCTTCCGGGCCHHHHHHHHHH
T ss_pred HcCCCC-EEEECCcccCCCCChhhCCHHHHHHHHHH
Confidence 545788 556655 223332 3577888888774
|
| >3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A* | Back alignment and structure |
|---|
Probab=82.18 E-value=5.7 Score=36.22 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=23.0
Q ss_pred cccCCCHHHHHHHHHHHHhcCcEEE
Q 019899 110 VGNIIPRETLYELLDFAREKNIHVI 134 (334)
Q Consensus 110 tG~~~~~~~l~~i~~~~~~~~~~vi 134 (334)
.|-.++.+|+++|.+.|+++||-||
T Consensus 249 ~~g~YT~~di~eIv~YA~~rgI~VI 273 (525)
T 3gh5_A 249 PGGYYTQEQFKDIVSYAAERYIEVI 273 (525)
T ss_dssp CCCCBCHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 3567999999999999999999999
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=82.16 E-value=11 Score=30.80 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=62.3
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhh---hhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRD---IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~---~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+.+++.+|++.++=.. ...|.+.|-+|++..-.-....+. +. ..|.++..+.++ --|.+++++.++....
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~-~~g~~~~~~~~D-----v~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT-RKGYDAHGVAFD-----VTDELAIEAAFSKLDA 82 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHH-HTTCCEEECCCC-----TTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCcEEEEEee-----CCCHHHHHHHHHHHHH
Confidence 4677777777787444 555678888888765432222222 22 346667666652 2367888888888777
Q ss_pred cCCceeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 019899 94 RGVKVRGILICNP-ANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 94 ~~~~~~~i~~~~p-~nptG~--~~~~~~l~~i~~~ 125 (334)
+.+++. ++++|. .++.+- -++.++++++.++
T Consensus 83 ~~G~iD-iLVNNAG~~~~~~~~~~~~e~~~~~~~v 116 (255)
T 4g81_D 83 EGIHVD-ILINNAGIQYRKPMVELELENWQKVIDT 116 (255)
T ss_dssp TTCCCC-EEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HCCCCc-EEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 767888 555554 333333 3467778777764
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.10 E-value=8.5 Score=31.15 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=49.6
Q ss_pred CcEEEecCcHHHHH-HHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVE-ILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~-~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++- .+...|.+.|.+|++..-.-........ ..+.++..+..+ --|.++++++++......+
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g 80 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAA-ELGAAVRFRNAD-----VTNEADATAALAFAKQEFG 80 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-------------CEEEECC-----TTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH-HhCCceEEEEcc-----CCCHHHHHHHHHHHHHHcC
Confidence 34566666666664 4455566788787776544333333333 334445555442 2356777777766554444
Q ss_pred ceeEEEEeCCCCCccc------CCCHHHHHHHHH
Q 019899 97 KVRGILICNPANPVGN------IIPRETLYELLD 124 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~------~~~~~~l~~i~~ 124 (334)
++..++.+....+.+. ..+.+++++..+
T Consensus 81 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~ 114 (257)
T 3tpc_A 81 HVHGLVNCAGTAPGEKILGRSGPHALDSFARTVA 114 (257)
T ss_dssp CCCEEEECCCCCCCCCSEETTEECCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCccccccccCCHHHHHHHHH
Confidence 7775554433332222 245566666655
|
| >2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A* | Back alignment and structure |
|---|
Probab=81.60 E-value=5.7 Score=36.16 Aligned_cols=27 Identities=30% Similarity=0.625 Sum_probs=23.7
Q ss_pred CcccCCCHHHHHHHHHHHHhcCcEEEE
Q 019899 109 PVGNIIPRETLYELLDFAREKNIHVIS 135 (334)
Q Consensus 109 ptG~~~~~~~l~~i~~~~~~~~~~vi~ 135 (334)
|.+..++.+|+++|.+.|+++||-||-
T Consensus 207 ~~~~~YT~~di~eiv~yA~~rgI~VIP 233 (507)
T 2gjx_A 207 PVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507)
T ss_dssp TTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 335679999999999999999999993
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=80.97 E-value=5.9 Score=31.96 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=55.8
Q ss_pred CcEEEecCcHHHHH-HHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVE-ILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~-~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++- .+...|.+.|.+|++..-.-........ ..+.++..+.++ --|.++++++++......+
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g 79 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAA-SIGKKARAIAAD-----ISDPGSVKALFAEIQALTG 79 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-HHCTTEEECCCC-----TTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HhCCceEEEEcC-----CCCHHHHHHHHHHHHHHCC
Confidence 34566666666664 4455566788888876544333333333 335555555542 2356777777766554444
Q ss_pred ceeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 019899 97 KVRGILICNPANPVGN--IIPRETLYELLD 124 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~--~~~~~~l~~i~~ 124 (334)
++..++.+....+.+. -.+.++++++.+
T Consensus 80 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 109 (247)
T 3rwb_A 80 GIDILVNNASIVPFVAWDDVDLDHWRKIID 109 (247)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 6785554444333332 346666666665
|
| >1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 | Back alignment and structure |
|---|
Probab=80.15 E-value=4.3 Score=27.70 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=41.1
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEE-Eecccc
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVI-SDEIYG 140 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi-~D~~~~ 140 (334)
...+++.|.+.++++ ++..+++-.|-|..|..-+.. ..++.++..++.++.|. +||-++
T Consensus 36 ~~~~~~~l~~li~e~-----~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERlT 96 (98)
T 1iv0_A 36 LEEDVEALLDFVRRE-----GLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHHH-----TCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSCC
T ss_pred cHHHHHHHHHHHHHc-----CCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 345788999999987 888899999988777755432 24555554433366665 888764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 334 | ||||
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 2e-52 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 3e-50 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 3e-49 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 8e-48 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-47 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 1e-30 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 4e-29 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 6e-29 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 1e-28 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 8e-26 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-24 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 9e-24 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 3e-23 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 3e-22 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 5e-22 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 3e-20 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 5e-20 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 2e-18 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 1e-11 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 9e-11 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 1e-09 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 6e-08 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 1e-07 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 2e-05 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 4e-05 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 8e-04 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 0.004 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 176 bits (446), Expect = 2e-52
Identities = 158/334 (47%), Positives = 232/334 (69%), Gaps = 5/334 (1%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
M FM+++ G V+FDP+ +VLTAGAT A E FCLAD G A+L+P+PYYPGFDRD+++
Sbjct: 93 MVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW 152
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGVE++P+HC S++ F + TAL++A+ +A KR ++V+G+L+ NP+NP+G + R LY
Sbjct: 153 RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELY 212
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD-----KDRVHIIYGLSKD 175
LL F +K IH+ISDEIY G+ F + F+S+ E+L+ D RVH++Y LSKD
Sbjct: 213 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKD 272
Query: 176 LSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235
L LPGFR G IYS ++ V+AAA K++ F +S+ TQ LL +MLSD K + Y+ N +R+
Sbjct: 273 LGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL 332
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
K+ V+GL++ GI C +AGL+CW DM L+ S + + E+ELW K++ +N++P
Sbjct: 333 KQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISP 392
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
GS+CHC EPGWFR CF +L + L ++R++
Sbjct: 393 GSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAF 426
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 169 bits (429), Expect = 3e-50
Identities = 72/319 (22%), Positives = 140/319 (43%), Gaps = 26/319 (8%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
+S P + ++T G + A+ L + D G+ ++V SPY+ + +RF G ++ V
Sbjct: 87 LSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGG-VVVEVETL 145
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
+ F + +A + + +++ +P NP G + P+E L L A E + +
Sbjct: 146 PEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFY 199
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES 192
++SDEIY ++ E F V + + G +K ++ G+R G E
Sbjct: 200 LVSDEIYEHLLYEGEHFSPG-------RVAPEHTLTVNGAAKAFAMTGWRIGYACGPKE- 251
Query: 193 VLAAAKKLTRFCSISAPTQ--RLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG 250
V+ A ++R + S T + L++ + + ++E + ++ D + GL LG
Sbjct: 252 VIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG 311
Query: 251 IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310
++ S Y D S + P E+ ++LL A + V PG+ G R
Sbjct: 312 LKAVRPSGAFYVLMDTSPIAPD-----EVRAAERLLE-AGVAVVPGTDFAA--FGHVRLS 363
Query: 311 FTSLTHEDIPLVIERIQKV 329
+ + + E++ +ER +V
Sbjct: 364 Y-ATSEENLRKALERFARV 381
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 168 bits (425), Expect = 3e-49
Identities = 149/337 (44%), Positives = 229/337 (67%), Gaps = 3/337 (0%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A FM + G V FDP ++V+ GAT A E + FCLAD G+A LVPSPYYP F+RD+R+
Sbjct: 92 IAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRW 151
Query: 61 RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
RTGV+LIP+HC S++NF + A+ +A+ A+K +KV+G+++ NP+NP+G + ++TL
Sbjct: 152 RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLK 211
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV---DKDRVHIIYGLSKDLS 177
+L F + NIH++ DEIY ++F +FVS+AEIL+ +E+ +KD VHI+Y LSKD+
Sbjct: 212 SVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMG 271
Query: 178 LPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237
LPGFR G+IYS+N+ V+ A+K++ F +S TQ L +MLSD KF+ +L + R+ K
Sbjct: 272 LPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGK 331
Query: 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGS 297
+ F GL+ +GI+C +++AGL+CW D+ L+ + E+ LW ++N K+NV+PGS
Sbjct: 332 RHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGS 391
Query: 298 ACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
+ C EPGWFR CF ++ + + + RI++ K
Sbjct: 392 SFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 163 bits (413), Expect = 8e-48
Identities = 56/319 (17%), Positives = 126/319 (39%), Gaps = 23/319 (7%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
+ + I++T G ++ L + + G+ +++P+P++ + ++ G + +
Sbjct: 86 LCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEG-TPVILPTT 144
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
F S + QA K + ++ P+NP G + + + + A E +
Sbjct: 145 VETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLW 198
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES 192
V+SDEIY ++ + + +S+ +R + G +K ++ G+R G +
Sbjct: 199 VLSDEIYEKILYDDAQHLSIGAA---SPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPL 255
Query: 193 VLAAAK--KLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG 250
V AA K + + + + + +QE L R + + D+ G
Sbjct: 256 VKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDAL---NAMPG 312
Query: 251 IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCC 310
+ C + Y + ++ S L+ +LL+ ++ PG+A R
Sbjct: 313 LECPKPDGAFYMFPSIAKTGRS-----SLDFCSELLDQHQVATVPGAAFGA--DDCIRLS 365
Query: 311 FTSLTHEDIPLVIERIQKV 329
+ + + I +ER++K
Sbjct: 366 Y-ATDLDTIKRGMERLEKF 383
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 161 bits (409), Expect = 3e-47
Identities = 59/320 (18%), Positives = 131/320 (40%), Gaps = 17/320 (5%)
Query: 15 FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRST 74
++I++ GA A + G +L+P+P + + + G + + V
Sbjct: 84 DPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVIL-AGGKPVEVPTYEE 142
Query: 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134
D F ++ L + K R ++I +P NP G ++ ++ L E+ DF E ++ VI
Sbjct: 143 DEFRLNVDELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVI 196
Query: 135 SDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVL 194
SDE+Y I+ + S+A + +R + G SK ++ G+R G + + + +
Sbjct: 197 SDEVYEHFIYDDARHYSIASLDG----MFERTITVNGFSKTFAMTGWRLGFVAAPSWIIE 252
Query: 195 AAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS 254
K + + + + + +E ++ + L ++G+
Sbjct: 253 RMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTV 312
Query: 255 ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSL 314
+ Y + + + + + +L A++ V PGSA G+ R + +
Sbjct: 313 KPKGAFYIFPRIRDTGLT-----SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT- 366
Query: 315 THEDIPLVIERIQKVAETCK 334
+E + ++R+++V + K
Sbjct: 367 AYEKLEEAMDRMERVLKERK 386
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 117 bits (293), Expect = 1e-30
Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 28/311 (9%)
Query: 28 PAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQA 87
A++++ L D G+ +LVP P YP + + G + + +++ I + +
Sbjct: 104 EALQLIFGALLDPGDEILVPGPSYPPY-TGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKK 162
Query: 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNE 147
+ + I + NP NP G + ++TL E+L+ A E I VISDEIY + E
Sbjct: 163 ITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE 216
Query: 148 EFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN-ESVLAAAKKLTRFCS- 205
+ V ++ GLSK G+R G +Y + E+ L+ ++ +
Sbjct: 217 HISPGSLT------KDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLAR 270
Query: 206 ----ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IRCSESSAGL 260
+ P Q I+ L+ +YL+ +++K+ D L ++ I ++
Sbjct: 271 IRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAF 327
Query: 261 YCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIP 320
Y + I K + E +L+ A + GS G FR F E +
Sbjct: 328 YIFPK----IEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL-PPIEILE 382
Query: 321 LVIERIQKVAE 331
++R +K +
Sbjct: 383 EAMDRFEKFMK 393
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 4e-29
Identities = 53/346 (15%), Positives = 106/346 (30%), Gaps = 45/346 (13%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGN--ALLVPSPYYPGFDRDI 58
+ ++ ++ T G T A+ + LA + + + V +P +P
Sbjct: 78 TQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF 137
Query: 59 RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET 118
G+E+ +N AL + N+A+ + NP G E
Sbjct: 138 NSA-GLEVREYAYYDAENHTLDFDALINSLNEAQA---GDVVLFHGCCHNPTGIDPTLEQ 193
Query: 119 LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSL 178
L + EK + D Y G G EE A + + SK+ L
Sbjct: 194 WQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA---MHKELIVASSYSKNFGL 250
Query: 179 PGFRTGVIYSYNESVLAAAKKL--------TRFCSISAPTQRLLISMLSDTKFIQEY--- 227
R G + + + A ++ ++LS+ +
Sbjct: 251 YNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQE 310
Query: 228 LETNKRRIKKLYDSFVAGLKQLGIRCS----ESSAGLYCWADMSGLIPSYSEKGELELWD 283
L ++RI+++ FV L++ G G++ ++ ++ E
Sbjct: 311 LTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVL 359
Query: 284 KLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
+L + R +T +++ + E I V
Sbjct: 360 RLREEFGVYAVASG----------RVNVAGMTPDNMAPLCEAIVAV 395
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 113 bits (283), Expect = 6e-29
Identities = 51/350 (14%), Positives = 103/350 (29%), Gaps = 65/350 (18%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNA--------LLVPSPYYPGFDRDI 58
+V+G A + IV G T + L L+ + A ++ +P+YP F
Sbjct: 114 EVVGNAAA-KDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT 172
Query: 59 RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET 118
++ +A + N + ++ +P NP G +
Sbjct: 173 KYFDKKGY---------VWAGNAANYVNVSNP------EQYIEMVTSPNNPEGLLR---- 213
Query: 119 LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSL 178
A K I D +Y + + D +++ +SK
Sbjct: 214 ------HAVIKGCKSIYDMVYYW-----PHYTPIKY-------KADEDILLFTMSKFTGH 255
Query: 179 PGFRTGVIYSYNESVLAAAKKLTRFCSI--SAPTQRLLISMLSD--------TKFIQEYL 228
G R G +ESV + TQ + +L + +++
Sbjct: 256 SGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLN 315
Query: 229 ETNKRRIKKLYDSFVAGLKQLG-IRCSESSAGLYC------WADMSGLIPSYSEKGELEL 281
+++++ + + A L Q E YC E E +
Sbjct: 316 TFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKD 375
Query: 282 WDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
+ +IN G + R T +D ++ ++ + +
Sbjct: 376 CYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVK 423
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 112 bits (280), Expect = 1e-28
Identities = 45/336 (13%), Positives = 93/336 (27%), Gaps = 41/336 (12%)
Query: 11 QAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVH 70
+ + + V SP + + ++
Sbjct: 100 VGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYR 159
Query: 71 CRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKN 130
T+ + A + +L NP G E ++ + +
Sbjct: 160 YWDTEKRGLDLQGFLSDLENAPEF---SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF 216
Query: 131 IHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN 190
+ D Y G GN E + A + + SK+ L R G +
Sbjct: 217 LFPFFDSAYQGFASGNLEKDAWAIRYFVS--EGFELFCAQSFSKNFGLYNERVGNLTVVA 274
Query: 191 ESVLAAAKKL--------TRFCSISAPTQRLLISMLSDTKFIQEY---LETNKRRIKKLY 239
+ + + L + + A R++ LSD + E+ ++T RI +
Sbjct: 275 KEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMR 334
Query: 240 DSFVAGLKQLGIRCS----ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTP 295
A L+ L + G++ + ++ + + L+N I + P
Sbjct: 335 SELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLP 383
Query: 296 GSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
R LT +++ V I +
Sbjct: 384 SG----------RINMCGLTTKNLDYVATSIHEAVT 409
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 103 bits (258), Expect = 8e-26
Identities = 67/310 (21%), Positives = 121/310 (39%), Gaps = 28/310 (9%)
Query: 23 TAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82
T GA A+ L D G+ ++V SP + + I + S
Sbjct: 94 TNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAG-------GTVNVVETFMSKN 146
Query: 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS 142
K + +LI +P NP G + RE L L+ A+++N ++ISDE+Y
Sbjct: 147 FQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSL 206
Query: 143 IFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR 202
++ +E + DR+ I G SK S+ G+R G + S + A +K +
Sbjct: 207 VYTDEFTSILDVS-----EGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSH 261
Query: 203 FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYC 262
S + + +R+ V LK++G++ E Y
Sbjct: 262 TTSCINTVAQYAALKALEVDNSYMVQTFKERKNF-----VVERLKKMGVKFVEPEGAFYL 316
Query: 263 WADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322
+ + G +++ ++LL K+ + PGSA +PG+ R F + E +
Sbjct: 317 FFKVRG--------DDVKFCERLLEEKKVALVPGSAFL--KPGFVRLSFA-TSIERLTEA 365
Query: 323 IERIQKVAET 332
++RI+ +
Sbjct: 366 LDRIEDFLNS 375
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 99.7 bits (247), Expect = 3e-24
Identities = 51/346 (14%), Positives = 99/346 (28%), Gaps = 45/346 (13%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADH--GNALLVPSPYYPGFDRDI 58
+A + + + T G + A+++ L + + + V P +
Sbjct: 79 IAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIF 138
Query: 59 RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET 118
G E+ L R +L NP G + +
Sbjct: 139 AG-AGFEVSTYPWYDEATNGVRFNDLLATLKTLPAR---SIVLLHPCCHNPTGADLTNDQ 194
Query: 119 LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSL 178
+++ + + + D Y G G EE + A + SK SL
Sbjct: 195 WDAVIEILKARELIPFLDIAYQGFGAGMEEDAY---AIRAIASAGLPALVSNSFSKIFSL 251
Query: 179 PGFRTGVIYSYNESVLAAAKKL--------TRFCSISAPTQRLLISMLSDTKFIQEYL-- 228
G R G + E AA + L + S +++ ++L+D +L
Sbjct: 252 YGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAE 311
Query: 229 -ETNKRRIKKLYDSFVAGLKQLGIRCS----ESSAGLYCWADMSGLIPSYSEKGELELWD 283
E + RI + V L + + G++ + +S D
Sbjct: 312 VEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVD 360
Query: 284 KLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
+L + + R C L ++ V + V
Sbjct: 361 RLREEFGVYLIASG----------RMCVAGLNTANVQRVAKAFAAV 396
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 98.5 bits (244), Expect = 9e-24
Identities = 51/347 (14%), Positives = 104/347 (29%), Gaps = 45/347 (12%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL---ADHGNALLVPSPYYPGFDRD 57
A +A V T ++ + L + +P P +
Sbjct: 80 SAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNH-TP 138
Query: 58 IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE 117
I G++L + T + ++ ++ +L NP G +E
Sbjct: 139 IFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEK---SIILLHACAHNPTGVDPRQE 195
Query: 118 TLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLS 177
EL +++N+ D Y G G+ + A E V + +K++
Sbjct: 196 QWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE--QGIDVVLSQSYAKNMG 253
Query: 178 LPGFRTGVIYSYNESVLAAAKKL--------TRFCSISAPTQRLLISMLSDTKFIQEYL- 228
L G R G A + + + R+ +L+ + +E+L
Sbjct: 254 LYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLV 313
Query: 229 --ETNKRRIKKLYDSFVAGLKQLGIRCS----ESSAGLYCWADMSGLIPSYSEKGELELW 282
+ RI + V+ LK+ G + G++C+ + E
Sbjct: 314 EVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQV 362
Query: 283 DKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
++L I +T R + ++ + I +V
Sbjct: 363 ERLTKEFSIYMTKDG----------RISVAGVASSNVGYLAHAIHQV 399
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 97.4 bits (241), Expect = 3e-23
Identities = 49/351 (13%), Positives = 105/351 (29%), Gaps = 47/351 (13%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADH--GNALLVPSPYYPGFDRDI 58
A + A+ D V + T A+ I + + + P +
Sbjct: 82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF 141
Query: 59 RFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET 118
+ G++ + + + + A +A + + +L NP G E
Sbjct: 142 ENQ-GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIF---VLHSCAHNPTGLDPTSEQ 197
Query: 119 LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY-GLSKDLS 177
+++D KN + D Y G G+ + + A L E++ + +K+
Sbjct: 198 WVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG 257
Query: 178 LPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLS---------------DTK 222
+ G R G + S A R +S T+
Sbjct: 258 MYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTE 317
Query: 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS----ESSAGLYCWADMSGLIPSYSEKGE 278
+ + T RI K+ + L +LG + + G++ + ++
Sbjct: 318 QWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP---------- 367
Query: 279 LELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
++ +L + + R L ++ V + I +V
Sbjct: 368 -QMVKRLEETHAVYLVASG----------RASIAGLNQGNVEYVAKAIDEV 407
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.5 bits (233), Expect = 3e-22
Identities = 48/348 (13%), Positives = 122/348 (35%), Gaps = 26/348 (7%)
Query: 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF 60
+A F ++LGQ + +++T G A+ L D G+ +++ P++ ++
Sbjct: 73 LASFFGELLGQEIDPL-RNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMM 131
Query: 61 RTGVELIPVHCRSTDNFAFSITALD---QAFNQARKRGVKVRGILICNPANPVGNIIPRE 117
G + ++ + A K + + +++ P NP+G + RE
Sbjct: 132 AGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSRE 191
Query: 118 TLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLS 177
L + ++ ++ I+DE+Y ++ + +S+A + +R I K S
Sbjct: 192 ELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM----WERTLTIGSAGKTFS 247
Query: 178 LPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSD-----TKFIQEYLETNK 232
G++ G + + + + ++ + + Y
Sbjct: 248 ATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFP 307
Query: 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSY-------SEKGELELWDKL 285
+ +++ D + L+ +G++ + D+S E + +
Sbjct: 308 QAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWM 367
Query: 286 LNIAKINVTPGSACHCIE-----PGWFRCCFTSLTHEDIPLVIERIQK 328
+ + P S + + + R CF + + E+++K
Sbjct: 368 IKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRK 414
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 93.5 bits (231), Expect = 5e-22
Identities = 43/335 (12%), Positives = 91/335 (27%), Gaps = 43/335 (12%)
Query: 10 GQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPV 69
G + + + +A+ + V P +P + F G+ +
Sbjct: 86 GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTY 144
Query: 70 HCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK 129
+ + A+K +L NP G + + E+ +
Sbjct: 145 RYFDAETRGVDFEGMKADLAAAKK---GDMVLLHGCCHNPTGANLTLDQWAEIASILEKT 201
Query: 130 NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSY 189
+ D Y G G EE + V I SK+ + RTG + +
Sbjct: 202 GALPLIDLAYQGFGDGLEEDAA---GTRLIASRIPEVLIAASCSKNFGIYRERTGCLLAL 258
Query: 190 NESVLAAAKKL--------TRFCSISAPTQRLLISMLSDTKFIQEY---LETNKRRIKKL 238
+ +++ ++L+ + ++ LE + + +L
Sbjct: 259 CADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRL 318
Query: 239 YDSFVAGLKQLGIRCS----ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT 294
+ L+ L G++ + E ++ I +
Sbjct: 319 REQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMV 367
Query: 295 PGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
S R L IP++ I +V
Sbjct: 368 GDS----------RINIAGLNDNTIPILARAIIEV 392
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 88.6 bits (218), Expect = 3e-20
Identities = 46/335 (13%), Positives = 115/335 (34%), Gaps = 23/335 (6%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
A +M + + +I+ AG+ A++++ + G+ ++V +P Y + ++
Sbjct: 81 ARWMEKRYD--IPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYY 138
Query: 62 TGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYE 121
+ D ++ ++ + NP G + + +
Sbjct: 139 DP---EFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKK 195
Query: 122 LLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF 181
LL+ A E + ++ D Y + E + + D I G + PGF
Sbjct: 196 LLELANEYDFLIVEDGPYSELRYSGEPTPPI------KHFDDYGRVIYLGTFSKILAPGF 249
Query: 182 RTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241
R G + ++ + + + + + ++ E++ K D+
Sbjct: 250 RIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDA 309
Query: 242 FVAGLKQ---LGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
+ L++ G+ ++ G++ + I + + ++ + + PG A
Sbjct: 310 MLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDT------KLMMERAVA-KGVAYVPGEA 362
Query: 299 --CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331
H + R FT + E I + R+ + +
Sbjct: 363 FFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIK 397
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 87.5 bits (215), Expect = 5e-20
Identities = 67/327 (20%), Positives = 130/327 (39%), Gaps = 31/327 (9%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
+ L + + +P +V+T+GAT A+ +L L G+ ++V P++ + D
Sbjct: 68 EALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKAR 127
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA 126
+ + + F ++AL++A + +L+ P NP G + L + A
Sbjct: 128 LVRLDLTPEGFRLDLSALEKALTPRTR------ALLLNTPMNPTGLVFGERELEAIARLA 181
Query: 127 REKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVI 186
R ++ +ISDE+Y +E E +R + K L G+R G I
Sbjct: 182 RAHDLFLISDEVY-------DELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWI 234
Query: 187 YSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246
E + A + + ++ + + E + ++ D GL
Sbjct: 235 VGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL 294
Query: 247 KQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWD--KLLNIAKINVTPGSACHCIEP 304
+ +G+R + A++ G WD +L+ A++ + P SA + +P
Sbjct: 295 RAMGLRVYVPEGTYFLMAELPG-------------WDAFRLVEEARVALIPASAFYLEDP 341
Query: 305 --GWFRCCFTSLTHEDIPLVIERIQKV 329
FR F T E++ L +ER+ +V
Sbjct: 342 PKDLFRFAFCK-TEEELHLALERLGRV 367
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 82.9 bits (203), Expect = 2e-18
Identities = 59/344 (17%), Positives = 122/344 (35%), Gaps = 23/344 (6%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
+ SQ++ + ++ +++++T GA A+ D G+ +++ P++ ++ ++
Sbjct: 76 SKLYSQLVDRTINPM-TEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA 134
Query: 62 TGVEL-IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLY 120
G+ IP+ T S + K + I+I P NP+G ++ R L
Sbjct: 135 GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELE 194
Query: 121 ELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPG 180
+ + ++ N+ +SDE+Y +F E + + + +R I K SL G
Sbjct: 195 VVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG----MWERTITIGSAGKTFSLTG 250
Query: 181 FRTGVIYSYNESVLAAAKKLTRFCSIS-----APTQRLLISMLSDTKFIQEYLETNKRRI 235
++ G Y + + L K + Y + +
Sbjct: 251 WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGEL 310
Query: 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGEL------ELWDKLLNIA 289
D + L ++G+ + G + AD S L E +
Sbjct: 311 MAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSV 370
Query: 290 KINVTPGSACHCIEP-----GWFRCCFTSLTHEDIPLVIERIQK 328
+ P SA + + R CF E++ E ++K
Sbjct: 371 GLQGIPPSAFYSEPNKHLGEDFVRYCFF-KKDENLQKAAEILRK 413
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 63.0 bits (151), Expect = 1e-11
Identities = 63/324 (19%), Positives = 130/324 (40%), Gaps = 17/324 (5%)
Query: 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR 72
+ +VL +G + + + + D G+ LVP P +P + G+ + +CR
Sbjct: 97 STIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFP-HYETVCKAYGIGMHFYNCR 155
Query: 73 STDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIH 132
+++ + + + + K +++ NP+NP G+ R+ + +++ A E +
Sbjct: 156 PENDWEADLDEIRRLKDDKTKL------LIVTNPSNPCGSNFSRKHVEDIVRLAEELRLP 209
Query: 133 VISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES 192
+ SDEIY G +F ++ + A+ I+ G +K+L +PG+R G + +
Sbjct: 210 LFSDEIYAGMVFKGKDPNATFTS-VADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPH 268
Query: 193 VLA----AAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248
K T + QE+L+ +I++ + +
Sbjct: 269 GNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE 328
Query: 249 L-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWF 307
G+ + +Y + + K ++E ++KLL + V PG+ H PG+
Sbjct: 329 CIGLAPTMPRGAMYLMSRIDLEKYR-DIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFT 385
Query: 308 RCCFTSLTHEDIPLVIERIQKVAE 331
R T E +ERI+ +
Sbjct: 386 RLTTT-RPVEVYREAVERIKAFCQ 408
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 60.1 bits (144), Expect = 9e-11
Identities = 37/236 (15%), Positives = 74/236 (31%), Gaps = 15/236 (6%)
Query: 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156
+ R +++ P NP + + L I VISDE+Y F + S+
Sbjct: 159 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASV---- 214
Query: 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLIS 216
A ++R + K + G++ G + K + ++
Sbjct: 215 LAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQ--LA 272
Query: 217 MLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEK 276
+ + E+ ++ D V L + + + D + S
Sbjct: 273 LADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVD----YSAVSTL 328
Query: 277 GELELWDKLLNIAKINVTPGSACHCIEP---GWFRCCFTSLTHEDIPLVIERIQKV 329
++E L + P S C +P R CF + ER++++
Sbjct: 329 DDVEFCQWLTQEHGVAAIPLSV-FCADPFPHKLIRLCFA-KKESTLLAAAERLRQL 382
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 56.4 bits (134), Expect = 1e-09
Identities = 44/240 (18%), Positives = 79/240 (32%), Gaps = 11/240 (4%)
Query: 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156
+ +L C+P NPVG + ++ L ++ D + ++ + SDEI+ I E I
Sbjct: 164 NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI- 222
Query: 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLIS 216
+E D+ SK ++ G I N + K S T +
Sbjct: 223 --DEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKA 280
Query: 217 MLSDTKFIQEYLETNKRRIKKLYDSFVAGLK--QLGIRCSESSAGLYCWADMSGLIPSYS 274
K ++L+ + I K + I+ W D L
Sbjct: 281 CEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMD-- 338
Query: 275 EKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
+ + +++ A+I G G+ R I +ER+ K + K
Sbjct: 339 ---HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLERLNKALKDLK 394
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 51.4 bits (121), Expect = 6e-08
Identities = 45/336 (13%), Positives = 98/336 (29%), Gaps = 22/336 (6%)
Query: 2 AGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR 61
A + S + D +V V L ++ G +++ +P Y F + I
Sbjct: 45 AHWFSTQHY--TAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-- 100
Query: 62 TGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYE 121
G + + + + K K+ + +
Sbjct: 101 -GNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMA 159
Query: 122 LLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGF 181
D + VISDEI+ ++G + + V + ++ SK ++P
Sbjct: 160 --DLCERHGVRVISDEIHMDMVWGEQPHIPW------SNVARGDWALLTSGSKSFNIPAL 211
Query: 182 RTGV-IYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240
I + S A L +S+P+ L + ++ + +L+ + +K
Sbjct: 212 TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLT 271
Query: 241 SFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298
+ + + W D+ L + L L+ K+ + PG
Sbjct: 272 YIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID-----DNALQKALIEQEKVAIMPGYT 326
Query: 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETCK 334
G+ R + + + +
Sbjct: 327 YGEEGRGFVRLNAG-CPRSKLEKGVAGLINAIRAVR 361
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 50.5 bits (119), Expect = 1e-07
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 250 GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE--PGWF 307
G++ +S GL+ W + ++ E+++ K+ PG +
Sbjct: 335 GVKWVKSEGGLFIWLTLPEGFDTW------EMFEYAKR-KKVFYVPGRVFKVYDEPSPSM 387
Query: 308 RCCFTSLTHEDIPLVIERIQKVAE 331
R F E I I+R+++V
Sbjct: 388 RLSFCLPPDEKIVEGIKRLREVVL 411
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 43.8 bits (102), Expect = 2e-05
Identities = 49/357 (13%), Positives = 103/357 (28%), Gaps = 66/357 (18%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEIL----CFCLADHGNALLVPSPYYPGFDRDIRF-- 60
+ V DP +IV T+GAT + + G ++ + R
Sbjct: 55 NQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLE 114
Query: 61 RTGVEL--IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET 118
R G E+ + + A+ + I + N +G +
Sbjct: 115 REGFEVTYLAPQRNGIIDLKELEAAMRD----------DTILVSIMHVNNEIGVVQDIAA 164
Query: 119 LYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSL 178
+ E+ R + I V + + +D ++ + +
Sbjct: 165 IGEM---CRARGIIYH---------------VDATQSVGKLPIDLSQLKVDLMSFSGHKI 206
Query: 179 PGFR-TGVIYSYNESVLAAAKKLT-----RFCSISAPTQRLLISMLSDTKFIQEYLETNK 232
G + G +Y + + ++ R ++ M + +E + T
Sbjct: 207 YGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEM 266
Query: 233 RRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN 292
R++ L + G+K + + I + S +E ++ + +
Sbjct: 267 ERLRGLRNRLWNGIKDIEEVY-----LNGDLEHGAPNILNVSFNY-VEGESLIMALKDLA 320
Query: 293 VTPGSACHC-----------------IEPGWFRCCFT-SLTHEDIPLVIERIQKVAE 331
V+ GSAC + R T E+I IE ++K
Sbjct: 321 VSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG 377
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (98), Expect = 4e-05
Identities = 58/321 (18%), Positives = 101/321 (31%), Gaps = 33/321 (10%)
Query: 7 QVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVEL 66
+ Q P Q++++ GA +E+L + G ++ P G GVE
Sbjct: 63 ENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEC 122
Query: 67 IPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA 126
V + V+ + +C+P NP G +I + LL+
Sbjct: 123 RTVPTLDNWQLDL---------QGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELT 173
Query: 127 REKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVI 186
R K I V + + + + I+ LSK +L G R G
Sbjct: 174 RGKAIVVADEAYIEFCPQASLAGWLA---------EYPHLAILRTLSKAFALAGLRCGFT 224
Query: 187 YSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246
NE V+ K+ +S P + LS + E + I + A
Sbjct: 225 L-ANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMR-ERVAQIIAEREYLIAALK 282
Query: 247 KQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306
+ + S Y A K ++ L + I + + + G
Sbjct: 283 EIPCVEQVFDSETNYILARF---------KASSAVFKSLWD-QGIILRDQNKQPSL-SGC 331
Query: 307 FRCCFTSLTHEDIPLVIERIQ 327
R T E+ VI+ ++
Sbjct: 332 LRITVG--TREESQRVIDALR 350
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 38.6 bits (88), Expect = 8e-04
Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
Query: 231 NKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAK 290
+++ F L QL + Y E+ +++L +LL +
Sbjct: 267 TWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRC--------EREDIDLQRRLLT-QR 317
Query: 291 INVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKV 329
I + + ++ ++R + ++ ++ V
Sbjct: 318 ILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNV 354
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 36.4 bits (83), Expect = 0.004
Identities = 41/352 (11%), Positives = 92/352 (26%), Gaps = 43/352 (12%)
Query: 20 IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRT--------GVELIPVHC 71
+ T A +I L + F T G + V+
Sbjct: 92 TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYI 151
Query: 72 --------RSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPR-ETLYEL 122
R F + L++ + V + +N G L +
Sbjct: 152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI--VATITSNSAGGQPVSLANLKAM 209
Query: 123 LDFAREKNIHVISDEI-YGGSIFGNEEFVSMAEILEAEEVDKDRVHI--IYGLSKDLSLP 179
A++ +I V+ D + + + ++ + + E++ ++ + +S
Sbjct: 210 YSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM 269
Query: 180 GFRTGVIYSYNESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234
G++ ++S + + +
Sbjct: 270 VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAY 329
Query: 235 IKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWD--KLLNIAKIN 292
V GL+++G+ C + + G + D L+P +L +A I
Sbjct: 330 RIAQVQYLVDGLEEIGVVC-QQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIR 388
Query: 293 VTPGSAC-----------HCIEPGWFRCCFT--SLTHEDIPLVIERIQKVAE 331
+ R + T + +IE + V E
Sbjct: 389 AVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 334 | |||
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.97 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.96 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.95 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.95 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.94 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.94 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.94 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.94 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.93 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.91 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.91 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.89 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.89 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.88 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.88 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.88 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.87 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.87 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.87 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.87 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.86 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.86 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.86 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.86 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.85 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.85 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.85 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.85 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.84 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.84 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.82 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.82 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.82 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.82 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.81 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.81 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.8 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.8 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.79 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.79 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.79 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.78 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.78 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.77 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.74 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.73 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.73 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.71 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.71 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.7 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.69 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.69 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.68 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.65 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.54 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.46 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.32 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.28 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.24 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 89.87 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 89.86 | |
| d1iv0a_ | 98 | Hypothetical protein, YqgF homologue {Thermus ther | 88.15 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 87.71 | |
| d1ofux_ | 119 | Hypothetical protein PA3008 {Pseudomonas aeruginos | 87.14 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 86.69 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 85.64 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 85.18 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 85.13 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.31 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 84.19 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 83.42 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 83.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 82.93 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 82.57 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 82.3 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 82.09 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 81.09 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.94 |
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=4.1e-53 Score=383.06 Aligned_cols=334 Identities=44% Similarity=0.900 Sum_probs=298.8
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.++++..+.+++++|++|+|+++++..++.+++++||+|++++|+|+++...+....|++++++++...+++.+|
T Consensus 92 iA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d 171 (428)
T d1iaya_ 92 IAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKIT 171 (428)
T ss_dssp HHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCC
T ss_pred HHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccc
Confidence 47888888876677889999999999999999999999999999999999999988777356899999999888899999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc--
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA-- 158 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~-- 158 (334)
.+.++++++.....+.+++++++++|+||||.+++.+++++|+++|++|+++||+||+|+.+.|++..+.++.++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~ 251 (428)
T d1iaya_ 172 SKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQE 251 (428)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGG
T ss_pred cccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhh
Confidence 999999998887778899999999999999999999999999999999999999999999999988888787776553
Q ss_pred -cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 159 -EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 159 -~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.....++++++.|+||.++++|+|+||+++.++.+.+.++........+...+.++++.+...++.++++.+.++.+++
T Consensus 252 ~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~ 331 (428)
T d1iaya_ 252 MTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGK 331 (428)
T ss_dssp GTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhhhccccccccccccccch
Confidence 1223678999999999999999999999997888888888777777788889988888888877778888999999999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
+++.+.+.|+..|+++..|++|+|+|++++.........+..++++.|++++||.+.||..|+...++|+|++++..+++
T Consensus 332 r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~ 411 (428)
T d1iaya_ 332 RHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDG 411 (428)
T ss_dssp HHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHH
T ss_pred hHHHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHH
Confidence 99999999999999999999999999999987766666677789999999999999999999988889999999855777
Q ss_pred cHHHHHHHHHHHHHHcC
Q 019899 318 DIPLVIERIQKVAETCK 334 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~~ 334 (334)
++++++++|++++..+|
T Consensus 412 ~l~~al~Rl~~~l~~~k 428 (428)
T d1iaya_ 412 TVDIALARIRRFVGVEK 428 (428)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 89999999999998765
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=4.3e-53 Score=383.31 Aligned_cols=333 Identities=47% Similarity=0.947 Sum_probs=296.6
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.++++..+.+++++|++|+|+++++..++.+++++||+|+++.|+|+.+...+....|.++++++++.++++.+|
T Consensus 93 iA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~ 172 (431)
T d1m7ya_ 93 MVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQIT 172 (431)
T ss_dssp HHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCC
T ss_pred HHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhccccc
Confidence 47888888876678889999999999999999999999999999999999999988887456899999999888889999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
.+.+++++++....+.+++++++++|+||||.+++.+++++|+++|++++++||+||+|+.+.|++..+.++.++.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~ 252 (431)
T d1m7ya_ 173 ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRN 252 (431)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTT
T ss_pred HHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcc
Confidence 99999999988888889999999999999999999999999999999999999999999999998888888777655311
Q ss_pred c-----CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 161 V-----DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 161 ~-----~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
. ..++++++.|+||.+|++|+|+||++++++.+.+...........++..+.++.+.+....+.++++.+.+.++
T Consensus 253 ~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~ 332 (431)
T d1m7ya_ 253 CDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL 332 (431)
T ss_dssp CSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccchhhhhhhhhhhhhh
Confidence 1 14679999999999999999999999966666666666666777888888888888877776678889999999
Q ss_pred HHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++++.+.+.|++.|+++..|.+|+|+|++++........++..+++.+|++++||.+.||..|+...++|+|++++..+
T Consensus 333 ~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~ 412 (431)
T d1m7ya_ 333 KQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLP 412 (431)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSC
T ss_pred hhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCC
Confidence 99999999999999999999999999999999887777777888999999999999999999999888899999998557
Q ss_pred cccHHHHHHHHHHHHHHc
Q 019899 316 HEDIPLVIERIQKVAETC 333 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~~~ 333 (334)
++++++++++|++++++|
T Consensus 413 e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 413 ERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 788999999999999986
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.9e-51 Score=364.45 Aligned_cols=314 Identities=20% Similarity=0.346 Sum_probs=274.0
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.++.+. ...++++|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.+|+.+++++.+|
T Consensus 71 ia~~~~~~~~~-~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-~~g~~~~~~~~~~~~~~~~d 148 (388)
T d1gdea_ 71 IAEKLKKQNGI-EADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-LAGGKPVEVPTYEEDEFRLN 148 (388)
T ss_dssp HHHHHHHHHCC-CCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-HHTCEEEEEECCGGGTTCCC
T ss_pred HHHHHHhhccc-cCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-HcCCEEEEeecccccCCCCC
Confidence 35677665442 34567789999999999999999999999999999999999999998 99999999999888889999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+++|++++++ +++++++++|+||||.+++.+++++|+++|++|+++||+||+|+++.+.+....++..+..
T Consensus 149 ~~~l~~~~~~------~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~--- 219 (388)
T d1gdea_ 149 VDELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG--- 219 (388)
T ss_dssp HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT---
T ss_pred HHHHHHhCcc------CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccC---
Confidence 9999998876 7899999999999999999999999999999999999999999999988777777766654
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..+++++++||||.+|++|+|+||+++ ++++.+.+..... ..+.+...|.++..++...++ .+++.+.++.+.++
T Consensus 220 -~~~~~i~~~S~SK~~~~~GlR~G~ii~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 296 (388)
T d1gdea_ 220 -MFERTITVNGFSKTFAMTGWRLGFVAA-PSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRR 296 (388)
T ss_dssp -CGGGEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHH
T ss_pred -CCCeEEEEeCChhhccCccccEEEEEe-eccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHh
Confidence 157899999999999999999999998 7787777766543 346678888888889887654 55667788889999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
+..+.+.|.+.++.+..|.+|+|+|++++... .++.+++.++++++||.+.||..|+...++++|++++ .++++
T Consensus 297 ~~~~~~~l~~~~~~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~-~~~e~ 370 (388)
T d1gdea_ 297 RKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTG-----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA-TAYEK 370 (388)
T ss_dssp HHHHHHHHHHTTCCCCCCCBTTEECCBCGGGT-----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC-SCHHH
T ss_pred hhhhhhhhhhccccccCCCceEEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec-CCHHH
Confidence 99999999999999999999999999997532 2457889999999999999999998877899999998 78889
Q ss_pred HHHHHHHHHHHHHHcC
Q 019899 319 IPLVIERIQKVAETCK 334 (334)
Q Consensus 319 l~~~l~~l~~~~~~~~ 334 (334)
+++++++|+++++++|
T Consensus 371 l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 371 LEEAMDRMERVLKERK 386 (388)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999976
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.6e-50 Score=361.54 Aligned_cols=309 Identities=17% Similarity=0.362 Sum_probs=270.3
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.+..+ +.+++++|++|+|+++++..++.+++++||.|++++|+|++|...++ ..|..++.++...++++.+|
T Consensus 76 ia~~~~~~~g--~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-~~~~~~v~~~~~~~~~~~~d 152 (388)
T d1j32a_ 76 IAQKLQRDNG--LCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-LAEGTPVILPTTVETQFKVS 152 (388)
T ss_dssp HHHHHHHHHC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-HTTCEEEEECCCGGGTTCCC
T ss_pred HHHHHHHhcc--cCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH-HhcCeEEEEecccccccCCC
Confidence 4678888777 77899999999999999999999999999999999999999999998 88999999998777889999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.+++.+++++|+++|++++++||+||+|+.+.+++..+.++....+.
T Consensus 153 ~~~l~~~~~~------~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~-- 224 (388)
T d1j32a_ 153 PEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE-- 224 (388)
T ss_dssp HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH--
T ss_pred HHHHHHhCCC------CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcc--
Confidence 9999998876 88999999999999999999999999999999999999999999999987777766554331
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..++++++.|+||.++++|+|+||+++ ++++++.+.+... ..+.+...|.++..++... ++++.+.++.++++
T Consensus 225 -~~~~~i~~~S~SK~~~~~GlRvG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~---~~~~~~~~~~~~~~ 299 (388)
T d1j32a_ 225 -AYERSVVCSGFAKTYAMTGWRVGFLAG-PVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAER 299 (388)
T ss_dssp -HHHTEEEEEESTTTTTCTTTCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHH
T ss_pred -cccceeEecCChhhhhcchhHeEEEEE-CHHHHHHHHHhhhhccccccHHHHHHHhhcccch---HHHHHHHHHHHHHH
Confidence 036789999999999999999999998 8888888776543 3467788888887777653 35677888999999
Q ss_pred HHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc
Q 019899 239 YDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE 317 (334)
Q Consensus 239 ~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~ 317 (334)
++.+.+.|++. |+++..|++|+|+|+++++... ++.+++.+|++++||.+.||..|+. ++++|++++ .+++
T Consensus 300 ~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~~~-----~~~~~~~~ll~~~gV~v~pG~~F~~--~~~~Rls~~-~~~e 371 (388)
T d1j32a_ 300 RRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGR-----SSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYA-TDLD 371 (388)
T ss_dssp HHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTC-----CHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECC-SCHH
T ss_pred HHHHHHHHHhCCCCEecCCCceEEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEe-CCHH
Confidence 99999999987 8899999999999999986432 4568899989999999999999975 689999998 7889
Q ss_pred cHHHHHHHHHHHHHHc
Q 019899 318 DIPLVIERIQKVAETC 333 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~ 333 (334)
++++++++|+++++.+
T Consensus 372 ~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 372 TIKRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.9e-50 Score=357.39 Aligned_cols=304 Identities=23% Similarity=0.423 Sum_probs=262.6
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
|++|+.++.+ +.+++++|++|+|+++++..++.+++++||.|++++|+|+++...++ ..|.+++.+++.+++++.+|
T Consensus 77 ia~~~~~~~~--~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d 153 (382)
T d1b5pa_ 77 LAEKFRRENG--LSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-FAGGVVVEVETLPEEGFVPD 153 (382)
T ss_dssp HHHHHHHTTC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-HTTCEEEEEECCGGGTTCCC
T ss_pred HHhhhhhhcc--cccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHH-HhcCeEEEEecccccccCCC
Confidence 3567777666 78899999999999999999999999999999999999999999998 99999999998877889999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++++++ +++++++++|+||||.+++.+++++|+++|++|+++||+||+|+++.|++....+...
T Consensus 154 ~~~l~~~~~~------~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~------ 221 (382)
T d1b5pa_ 154 PERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV------ 221 (382)
T ss_dssp HHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT------
T ss_pred HHHHHHhCCC------CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc------
Confidence 9999998875 8899999999999999999999999999999999999999999999998765544322
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
..++++++.|+||.++++|+|+||+++ ++++++.+...... .+.+...+.++..++........+....++.++++
T Consensus 222 -~~~~~i~~~s~SK~~~~~GlR~G~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T d1b5pa_ 222 -APEHTLTVNGAAKAFAMTGWRIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRR 299 (382)
T ss_dssp -CTTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEecchhhccCcHhheEEEEE-CHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhh
Confidence 267899999999999999999999998 88888887665443 45677888887777777666677788888999999
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++.+.+.+.+.|+++..|++|+|+|+++++... +...+.+. +.++||.+.||..|+. ++++|++++ .++++
T Consensus 300 ~~~~~~~l~~~g~~~~~p~gg~~~~~~~~~~~~-----~~~~~~~~-l~e~gV~v~PG~~F~~--~~~iRis~~-~~~e~ 370 (382)
T d1b5pa_ 300 RDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAP-----DEVRAAER-LLEAGVAVVPGTDFAA--FGHVRLSYA-TSEEN 370 (382)
T ss_dssp HHHHHHHHHHHTCCBCCCSBTTEEEEECTTTCS-----SHHHHHHH-HHHTTEECEESGGGTC--TTEEEEECC-SCHHH
T ss_pred hhHHHHHHhhcCCeEecCCceEEEeEeCCCCCC-----CHHHHHHH-HHHCCEEEEeCcccCC--CCeEEEEEc-CCHHH
Confidence 999999999999999999999999999976432 33456666 5568999999999985 689999998 68889
Q ss_pred HHHHHHHHHHHH
Q 019899 319 IPLVIERIQKVA 330 (334)
Q Consensus 319 l~~~l~~l~~~~ 330 (334)
+++++++|++++
T Consensus 371 l~~al~rl~~~L 382 (382)
T d1b5pa_ 371 LRKALERFARVL 382 (382)
T ss_dssp HHHHHHHGGGGC
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.5e-48 Score=348.04 Aligned_cols=309 Identities=25% Similarity=0.376 Sum_probs=263.1
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
|++|+.++.+ +.+++++|++|+|+++++.+++.+++++||+|++++|+|+.+...++ ..|.+++.++...++++.+|
T Consensus 79 ia~~~~~~~g--~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~-~~g~~~v~v~~~~~~~~~~d 155 (395)
T d1xi9a_ 79 IVEREKRKNG--VDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVK-FYGGKPVEYRTIEEEDWQPD 155 (395)
T ss_dssp HHHHHHHHHC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-HTTCEEEEEEEEGGGTSEEC
T ss_pred HHHhhhhccc--ccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhh-hcCCEEEEEeccccccccch
Confidence 4678888877 78899999999999999999999999999999999999999999998 99999999998777889999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
++++++.+++ +++++++++|+||||.+++.+++++|+++|++|+++|++|++|.++.|++.. .+...+..
T Consensus 156 ~~~~~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~--- 225 (395)
T d1xi9a_ 156 IDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH-ISPGSLTK--- 225 (395)
T ss_dssp HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC-CCHHHHCS---
T ss_pred HHHHHHhhcc------cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc-cchhhcCC---
Confidence 9999998876 8899999999999999999999999999999999999999999999886543 33344443
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCH-H----HHHHHHHhh-cccCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE-S----VLAAAKKLT-RFCSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~-~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
.++++++.|+||.++++|+|+||+++.++ . +.+...... .....+.+.|.++..++... .+++.+.++.
T Consensus 226 --~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~ 300 (395)
T d1xi9a_ 226 --DVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKK 300 (395)
T ss_dssp --SSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHH
T ss_pred --CCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 67899999999999999999999876432 2 222222222 23567888898888877653 3567788889
Q ss_pred HHHHHHHHHHHHHhCC-CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 235 IKKLYDSFVAGLKQLG-IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
++++++.+.+.|++.+ +.+..|.+|+|+|++++.... .++.+++.++++++||.+.||+.|+...++++||+++
T Consensus 301 ~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~----~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~- 375 (395)
T d1xi9a_ 301 LKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL- 375 (395)
T ss_dssp HHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-
T ss_pred HHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCCC----CCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEec-
Confidence 9999999999999885 577789999999999986432 2456889999999999999999998877899999998
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 019899 314 LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~~~ 332 (334)
.+++++++++++|++++++
T Consensus 376 ~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 376 PPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6889999999999999986
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=7.4e-48 Score=345.04 Aligned_cols=315 Identities=18% Similarity=0.198 Sum_probs=258.2
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC-CCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR-STDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~~ 79 (334)
||+|++++.+ +.+++++|++|+|+++++..++.+++++||.|++++|.|+++..... ..|...+.++.. .+..+.+
T Consensus 75 ia~~~~~~~g--~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~ 151 (394)
T d1c7na_ 75 VKKWMKDRHQ--WDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-NQERKIIECELLEKDGYYTI 151 (394)
T ss_dssp HHHHHHHHHC--CCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-TTTCEEEECCCEEETTEEEC
T ss_pred HHHHHHHhcC--CCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhHHh-hhhhcccccccccccccccc
Confidence 4788888877 78899999999999999999999999999999999999999999998 888888888753 3455678
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|.+.++..+.+ ++++++++++|+||||.+++.+++++|+++|++++++||+||+|.++.|++....+.......
T Consensus 152 d~~~~~~~~~~-----~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~- 225 (394)
T d1c7na_ 152 DFQKLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ- 225 (394)
T ss_dssp CHHHHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHH-
T ss_pred hhhhhhhhhcc-----ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcc-
Confidence 88888887754 379999999999999999999999999999999999999999999999877655443332221
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCC--ChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSI--SAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
...+++++.|+||.++++|+|+||++++++.+.+.+......... +...+.+++... . ....++..++++.+++
T Consensus 226 --~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~-~-~~~~~~~~~~~~~~~~ 301 (394)
T d1c7na_ 226 --LADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEIC-Y-KECGKWLDGCIKVIDK 301 (394)
T ss_dssp --HHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHH-H-HHCHHHHHHHHHHHHH
T ss_pred --cccceeecccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhh-h-cchhhhhcccccccch
Confidence 157889999999999999999999999888888888766544322 222222222222 1 1125566778888888
Q ss_pred HHHHHHHHHHhC--CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCC
Q 019899 238 LYDSFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLT 315 (334)
Q Consensus 238 ~~~~~~~~l~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~ 315 (334)
+++.+.+.++.. ++.+..|++++|+|++++... .++.+++..|+++.||.+.||+.||...++++|||++ .+
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~-----~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~ 375 (394)
T d1c7na_ 302 NQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK-----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-AP 375 (394)
T ss_dssp HHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC-SC
T ss_pred hhhhhhhhhhccccceeecCCCceeEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe-CC
Confidence 888888888765 677788999999999998642 2457899999998999999999998877889999998 78
Q ss_pred cccHHHHHHHHHHHHHHcC
Q 019899 316 HEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~~~~ 334 (334)
++++++++++|+++++++|
T Consensus 376 ~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 376 SSVIQESLERLNKALKDLK 394 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 8899999999999999876
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-47 Score=337.92 Aligned_cols=314 Identities=17% Similarity=0.271 Sum_probs=255.5
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC-CCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS-TDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~~ 79 (334)
|++|+.++.+ +.+++++|++|+|+++++..++.+++++||+|++++|+|+++...++ ..|.+++.++... .+++.+
T Consensus 44 ia~~~~~~~g--~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~~ 120 (361)
T d1d2fa_ 44 IAHWFSTQHY--TAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-GNQRTVMPVALEKQADGWFC 120 (361)
T ss_dssp HHHHHHHHSC--CCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHH-HTTCEEEEEECEECSSSEEC
T ss_pred HHHHHHHHhC--CCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchhHHHH-hhcceEEeeccccccccccc
Confidence 3677777777 77899999999999999999999999999999999999999999998 8999999988753 456779
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++.+++.+.+ .+++++++++|+||||.+++.+++++++++|+++++++|+||+|+.+.|++....++....
T Consensus 121 d~~~~~~~~~~-----~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~--- 192 (361)
T d1d2fa_ 121 DMGKLEAVLAK-----PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA--- 192 (361)
T ss_dssp CHHHHHHHHTS-----TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC---
T ss_pred ccccchhhccc-----CCceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccc---
Confidence 99999999865 3899999999999999999999999999999999999999999999998876666655443
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHH-HHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAA-KKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++++++.|+||.++++|+|+||+++.++...+.. .......+.+.+.+.+....+...+...++..+.+..++++
T Consensus 193 ---~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r 269 (361)
T d1d2fa_ 193 ---RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDN 269 (361)
T ss_dssp ---CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ---ccccccccccccccccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhh
Confidence 67889999999999999999999987565554443 33333333322222222222222122245667778888888
Q ss_pred HHHHHHHHHhC--CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCc
Q 019899 239 YDSFVAGLKQL--GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTH 316 (334)
Q Consensus 239 ~~~~~~~l~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 316 (334)
++.+.+.+.+. ++.+..|++|+++|+++++.. .++.+++.+|++++||.+.||+.|+...++++|+|++ .++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~-----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~-~~~ 343 (361)
T d1d2fa_ 270 LTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN-----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG-CPR 343 (361)
T ss_dssp HHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-SCH
T ss_pred HHHHHHHhhhhcccccccccCceeEEEEEccCCC-----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc-CCH
Confidence 88888877664 677888999999999986432 2457899999999999999999998877889999997 788
Q ss_pred ccHHHHHHHHHHHHHHcC
Q 019899 317 EDIPLVIERIQKVAETCK 334 (334)
Q Consensus 317 ~~l~~~l~~l~~~~~~~~ 334 (334)
+++++++++|+++++++|
T Consensus 344 e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 344 SKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999876
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=4.9e-47 Score=341.81 Aligned_cols=320 Identities=22% Similarity=0.367 Sum_probs=259.2
Q ss_pred Chhhhhhhhc----CCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCC
Q 019899 1 MAGFMSQVLG----QAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDN 76 (334)
Q Consensus 1 i~~~~~~~~~----~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~ 76 (334)
||+|+.++.+ ...++++++|++|+|+++++..++.+++++||+|++++|+|+.+...++ ..|.+++.+++.++++
T Consensus 81 ia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~ 159 (412)
T d1bw0a_ 81 VATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCK-AYGIGMHFYNCRPEND 159 (412)
T ss_dssp HHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-HTTCEEEEEEEEGGGT
T ss_pred HHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhh-ccCccccccccccccc
Confidence 3677776643 1245789999999999999999999999999999999999999999998 9999999999987888
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
+..+.+++++.+++ +++++++++|+||||.+++.+++++|+++|++++++||+||+|+++.|++....+.....
T Consensus 160 ~~~~~~~l~~~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~ 233 (412)
T d1bw0a_ 160 WEADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSV 233 (412)
T ss_dssp TEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCT
T ss_pred cchhhHHHHhhhhc------cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccc
Confidence 99999999988765 889999999999999999999999999999999999999999999999875543332222
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCH-----HHHHHHHHhhcc-cCCChHHHHHHHHhhCChHHHHHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE-----SVLAAAKKLTRF-CSISAPTQRLLISMLSDTKFIQEYLET 230 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (334)
...+ ....++++.|+||.++++|+|+||++++++ .++......... .+.++..+..+...+.... ++++.+
T Consensus 234 ~~~~-~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 310 (412)
T d1bw0a_ 234 ADFE-TTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQ 310 (412)
T ss_dssp TSSC-CSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHH
T ss_pred cccc-cccccccccccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhccccccccc--cccccc
Confidence 1101 145678889999999999999999998532 333333333332 3455556655555543322 567788
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEE
Q 019899 231 NKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRC 309 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi 309 (334)
.++++.++++.+.+.|.+. |+.+..|.+|+|+|++++.... ....++.+++++|++++||.+.||+.|+. ++++||
T Consensus 311 ~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~-~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~--~g~iRi 387 (412)
T d1bw0a_ 311 IVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKY-RDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRL 387 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGB-SSCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEE
T ss_pred ccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhc-CCCCCHHHHHHHHHHhCCEEEEeccccCC--CCeEEE
Confidence 8999999999999999775 8999999999999998874321 11235678999999999999999999974 789999
Q ss_pred EecCCCcccHHHHHHHHHHHHHHcC
Q 019899 310 CFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 310 ~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
|++ .+++++++++++|++++++|.
T Consensus 388 s~~-~~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 388 TTT-RPVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp ECC-SCHHHHHHHHHHHHHHHHHHB
T ss_pred EEc-CCHHHHHHHHHHHHHHHHhcC
Confidence 998 788999999999999999873
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=6.2e-47 Score=341.56 Aligned_cols=316 Identities=19% Similarity=0.324 Sum_probs=266.1
Q ss_pred ChhhhhhhhcCCCCCC-CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCC----
Q 019899 1 MAGFMSQVLGQAVSFD-PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTD---- 75 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~---- 75 (334)
||+|+.++.+ ..++ .++|++|+|+++|+..++++++++||.|++++|+|+++...+. ..|.+++.+++.++.
T Consensus 75 iA~~~~~~~g--~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~ 151 (418)
T d2r5ea1 75 LSKLYSQLVD--RTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVK-AAGGIPRFIPLKPNKTGGT 151 (418)
T ss_dssp HHHHHHHHHT--SCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECEESCCSSC
T ss_pred HHHHHHHHhC--CCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHH-HcCCeEEEEEecccccccc
Confidence 4678888777 6667 4799999999999999999999999999999999999999999 899999999975432
Q ss_pred ----CccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 76 ----NFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 76 ----~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
.+..+.+++.+.... +++++++++|+||||.+++.+++++|+++|++|+++||+||+|..+.+++....+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~------~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s 225 (418)
T d2r5ea1 152 ISSADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIR 225 (418)
T ss_dssp EEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC
T ss_pred hhhhhhhhhHHHHhhhhhc------cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCcccc
Confidence 245677777776654 8999999999999999999999999999999999999999999999998776666
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCCh----HHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDT----KFIQ 225 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~----~~~~ 225 (334)
+..+.. ...+++++.|+||.++++|+|+||+++ ++++++.+.+... .++.+++.|.+++.++... +..+
T Consensus 226 ~~~~~~----~~~~~i~~~S~SK~~~~pGlRiG~~~~-~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~ 300 (418)
T d2r5ea1 226 ICTLPG----MWERTITIGSAGKTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPE 300 (418)
T ss_dssp GGGSTT----TGGGEEEEEEHHHHTTCGGGCCEEEES-CHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTT
T ss_pred cccccc----ccceeeeeecCCccccCCCcccccccc-cchhhhhhhhcccccccccccchhhhccccccccccccccch
Confidence 665543 267899999999999999999999998 8888888876543 4567888888777666431 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC------CChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS------YSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
+++.++++.++.+++.+.+.|++.|+++..|++|||+|+++++.... ....++.+++..|++++||.+.||+.|
T Consensus 301 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F 380 (418)
T d2r5ea1 301 CYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAF 380 (418)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGG
T ss_pred hhHHHHHHHHHHhhhhHHhhHhhcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhh
Confidence 56788899999999999999999999999999999999999764321 123466789999999999999999999
Q ss_pred CCCC-----CCeEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 300 HCIE-----PGWFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 300 ~~~~-----~~~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
+... ++++|+|++ .+++++++++++|++++.
T Consensus 381 ~~~~~~~~g~~~iRis~~-~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 381 YSEPNKHLGEDFVRYCFF-KKDENLQKAAEILRKWKG 416 (418)
T ss_dssp SCGGGHHHHTTEEEEECC-SCHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCCCCEEEEEec-CCHHHHHHHHHHHHHHHc
Confidence 7642 479999997 688999999999999875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-45 Score=328.47 Aligned_cols=299 Identities=26% Similarity=0.417 Sum_probs=255.2
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++|+.+..+ ...++++|++|+|+++++..++.+++++||.|++++|+|+.+..... ..|...+.++..+++++.++
T Consensus 74 ia~~~~~~~~--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 150 (375)
T d1o4sa_ 74 IAKRIGERYK--KDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII-LAGGTVNVVETFMSKNFQPS 150 (375)
T ss_dssp HHHHHHHHHT--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECCGGGTTCCC
T ss_pred HHhhhhhccc--cccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhh-ccccccccccccccccccch
Confidence 3567777777 77899999999999999999999999999999999999999999888 88999999998888888999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
.+.++..... +++++++++|+||||.+++.+++++|+++|++|+++||+||+|..+.+++.....+.....
T Consensus 151 ~~~~~~~~~~------~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--- 221 (375)
T d1o4sa_ 151 LEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG--- 221 (375)
T ss_dssp HHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSS---
T ss_pred hHHHHHhhcc------CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCC---
Confidence 9888876665 8899999999999999999999999999999999999999999998886655444333222
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKL 238 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (334)
.++++++.|+||.++++|+|+||+++ +++.++.+....... ..+...+......+.... ...++.+.++
T Consensus 222 --~~~~i~~~S~SK~~~l~G~R~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~r 292 (375)
T d1o4sa_ 222 --FDRIVYINGFSKSHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALEVDN------SYMVQTFKER 292 (375)
T ss_dssp --STTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCC------HHHHHHHHHH
T ss_pred --CCCEEEEeechhhccCCccccccccc-cccchhhhhhhhccccccccccchhhhhhhcccch------hhhHHHHHHH
Confidence 78999999999999999999999998 778777776654443 445566666665554432 3455678888
Q ss_pred HHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCccc
Q 019899 239 YDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHED 318 (334)
Q Consensus 239 ~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~ 318 (334)
++.+.+.|++.|+++..|++|+|+|++++. ++.+++.++++++||.+.||..|+. ++++||+++ .++++
T Consensus 293 ~~~~~~~l~~~g~~~~~p~gg~f~~~~~~~--------~~~~~~~~ll~~~gV~v~pG~~F~~--~g~iRis~~-~~~e~ 361 (375)
T d1o4sa_ 293 KNFVVERLKKMGVKFVEPEGAFYLFFKVRG--------DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFA-TSIER 361 (375)
T ss_dssp HHHHHHHHHHTTCCCCCCSBSSEEEEECSS--------CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECC-SCHHH
T ss_pred HHHHHHHHHhcCceEecCCccEEEEEECCC--------CHHHHHHHHHHhCCEEEEEccccCC--CCeEEEEEc-CCHHH
Confidence 899999999999999999999999999985 3468889989989999999999974 789999998 78899
Q ss_pred HHHHHHHHHHHHH
Q 019899 319 IPLVIERIQKVAE 331 (334)
Q Consensus 319 l~~~l~~l~~~~~ 331 (334)
+++++++|+++++
T Consensus 362 l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 362 LTEALDRIEDFLN 374 (375)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999885
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-46 Score=335.74 Aligned_cols=315 Identities=17% Similarity=0.349 Sum_probs=263.0
Q ss_pred ChhhhhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC------
Q 019899 1 MAGFMSQVLGQAVSFDP-SQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS------ 73 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~------ 73 (334)
||+|+.++++ +.+++ ++|++|+|+++++..++.+++++||.|++++|+|+.|...+. ..|.+++.++..+
T Consensus 73 ia~~~~~~~g--~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~-~~g~~~v~~~~~~~~~~~~ 149 (418)
T d1w7la_ 73 LASFFGELLG--QEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTM-MAGGRPVFVSLKPGPIQNG 149 (418)
T ss_dssp HHHHHHHHHT--CCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECEECC---C
T ss_pred HHHHHHHHhC--CCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHH-HcCCEeecccccccccccc
Confidence 3677777776 66664 689999999999999999999999999999999999999998 8999998888643
Q ss_pred ----CCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc
Q 019899 74 ----TDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF 149 (334)
Q Consensus 74 ----~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~ 149 (334)
++++.+|.+++....++ +++++++++|+||||.+++.+++++|+++|++++++||+||+|.++.|++..+
T Consensus 150 ~~~~~~~~~~d~~~~~~~~~~------~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~ 223 (418)
T d1w7la_ 150 ELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQH 223 (418)
T ss_dssp CSEEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred ccccccCcccchhhhhccccc------cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCC
Confidence 23456676666665544 78999999999999999999999999999999999999999999999988777
Q ss_pred chhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHH----
Q 019899 150 VSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKF---- 223 (334)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~---- 223 (334)
.++.++.. ..++++++.|+||.++++|+|+||+++ ++++++.+++... .++.+++.|.++..++.....
T Consensus 224 ~~~~~~~~----~~~~~i~~~S~SK~~~~pG~RvG~~v~-~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 298 (418)
T d1w7la_ 224 ISIASLPG----MWERTLTIGSAGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQ 298 (418)
T ss_dssp CCGGGSTT----TGGGEEEEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHccc----cccccceecccCccccCCCCccccccc-chhhhhhhccccccccccccchhhHHHHHHhhhccccccc
Confidence 77776654 257899999999999999999999998 8888888877654 456788888888877754321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcC-------CCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLI-------PSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
..+++..+++.++++++.+.+.|++.|+++..|++|+|+|++++... ......++.+++.+|++++||.+.||
T Consensus 299 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG 378 (418)
T d1w7la_ 299 PSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPV 378 (418)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEG
T ss_pred cccccccchhhhhhhhhhhhhhhhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcc
Confidence 23566788899999999999999999999999999999999987421 11223456789999999999999999
Q ss_pred CCcCCC-----CCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 297 SACHCI-----EPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 297 ~~~~~~-----~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
+.|+.. .++++|||++ .+++++++++++|+++.
T Consensus 379 ~~F~~~~~~~~~~~~iRis~~-~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 379 SIFYSVPHQKHFDHYIRFCFV-KDEATLQAMDEKLRKWK 416 (418)
T ss_dssp GGGSCHHHHTTSCSEEEEECC-CCHHHHHHHHHHHHHHH
T ss_pred hhhcCCCccCCCCCEEEEEEc-CCHHHHHHHHHHHHHHh
Confidence 998642 3579999997 68889999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-44 Score=326.65 Aligned_cols=312 Identities=19% Similarity=0.330 Sum_probs=257.2
Q ss_pred ChhhhhhhhcCCCC-CCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVS-FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~-~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
||+|++++.+ +. +++++|++|+|+++++..++.+++++||.|++++|+|+.+...++ ..|.+++.++. +...+
T Consensus 89 ia~~~~~~~g--~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-~~g~~~~~~~~---~~~~~ 162 (420)
T d1vp4a_ 89 ILKLLERMYG--ITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFR-QYLANFVVVPL---EDDGM 162 (420)
T ss_dssp HHHHHHHHHC--CCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-TTTCEEEEEEE---ETTEE
T ss_pred HHHHHHHHhC--CCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHH-HHhhhcccccc---ccccc
Confidence 4678887776 53 789999999999999999999999999999999999999999998 99999999996 33468
Q ss_pred cHHHHHHHHHHHHHcC--C-ceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 80 SITALDQAFNQARKRG--V-KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~--~-~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
+++.+...+.+..... . ...++++++|+||||.+++.+++++++++|++++++||+||+|.++.|++....+.....
T Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~ 242 (420)
T d1vp4a_ 163 DLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG 242 (420)
T ss_dssp CHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH
T ss_pred ccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc
Confidence 8898888776654322 2 344556778899999999999999999999999999999999999999877666666655
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRR 234 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (334)
. .+++++++|++|.++ +|+|+||+++ ++++++.+.+.... .+.+...|.+++.++....+ .+++.+.++.
T Consensus 243 ~-----~~~~i~~~s~sk~~~-~G~RiG~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~~ 314 (420)
T d1vp4a_ 243 G-----PERVVLLNTFSKVLA-PGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIEL 314 (420)
T ss_dssp C-----TTTEEEEEESTTTTC-GGGCEEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHH
T ss_pred c-----ccceeEEeccccccc-cccccccccc-cchhhhhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHHH
Confidence 4 788999999999885 9999999998 88998988776544 45677888888777765432 4556667777
Q ss_pred HHHHHHHHHHHHHhC-----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC--CCeE
Q 019899 235 IKKLYDSFVAGLKQL-----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE--PGWF 307 (334)
Q Consensus 235 ~~~~~~~~~~~l~~~-----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~--~~~i 307 (334)
++++++.+.+.|++. |+++..|++|+|+|+++|...+. .++.+. ++++||.+.||+.|+... ++++
T Consensus 315 ~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~d~------~~~~~~-l~~~gV~v~PG~~F~~~~~~~~~i 387 (420)
T d1vp4a_ 315 YRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDT------WEMFEY-AKRKKVFYVPGRVFKVYDEPSPSM 387 (420)
T ss_dssp HHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCT------TTTHHH-HHHHTEECEEGGGGCTTCCCCSEE
T ss_pred hhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCCCH------HHHHHH-HHHCCeEEEechhhCCCCCCCCEE
Confidence 888888888877764 78888999999999999875443 355655 566899999999998643 5799
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 308 RCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 308 Ri~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
|+|++..+++++++++++|+++++++
T Consensus 388 Rls~~~~~~e~l~~a~~rL~~~l~~~ 413 (420)
T d1vp4a_ 388 RLSFCLPPDEKIVEGIKRLREVVLEY 413 (420)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 99998568899999999999999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=4.1e-44 Score=321.78 Aligned_cols=312 Identities=17% Similarity=0.266 Sum_probs=257.3
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.++.+ +.+++++|++|+|+++++..++.+++++||.|++++|+|+.+...+. ..|.+++.++.++.. .+
T Consensus 80 ia~~l~~~~g--~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~-~~g~~~~~v~~~~~~---~~ 153 (403)
T d1wsta1 80 LARWMEKRYD--IPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFK-YYDPEFISIPLDDKG---MR 153 (403)
T ss_dssp HHHHHHHHHC--CCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-TTCCEEEEEEEETTE---EC
T ss_pred HHHHHHHHhC--CCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHh-hccccceeEeecccC---Cc
Confidence 4788888877 77899999999999999999999999999999999999999999998 999999999974333 34
Q ss_pred HHHHHHHHHHHHH-cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 81 ITALDQAFNQARK-RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 81 ~~~l~~~l~~~~~-~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
...+......... ....+.++++++|+||||.++|.+++++|+++|++|+++||+||+|.++.|++....++.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~-- 231 (403)
T d1wsta1 154 VDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDD-- 231 (403)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCS--
T ss_pred cccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCC--
Confidence 4444443333222 2335566788889999999999999999999999999999999999999998877767666554
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
.+++++++|+||.++ +|+|+||+++ ++++++.+...... ...+...+.+.+.+..... .+.++.+.++.+.+
T Consensus 232 ---~~~~i~~~S~SK~~~-~G~RiG~~i~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 305 (403)
T d1wsta1 232 ---YGRVIYLGTFSKILA-PGFRIGWVAA-HPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY-LDEHIPKIIEFYKP 305 (403)
T ss_dssp ---SSCEEEEEESTTTTC-GGGCCEEEEE-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred ---CCcEEEEccccceec-Cccccccccc-chHHHHHHHHHHhhhccccccchhhhHHhhhhccc-cchhHHHHHHHHHH
Confidence 789999999999996 9999999999 88888877765333 4667778877777776544 46777888899999
Q ss_pred HHHHHHHHHHhC---CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEEEEec
Q 019899 238 LYDSFVAGLKQL---GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFRCCFT 312 (334)
Q Consensus 238 ~~~~~~~~l~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iRi~~~ 312 (334)
+++.+.+.|.+. ++.+..|.+|+|+|+++|+..+. ..+++. +.++||.+.||+.|+.. .++++|++++
T Consensus 306 ~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~~~~------~~~~~~-l~~~gV~v~pg~~f~~~~~~~~~iRi~~~ 378 (403)
T d1wsta1 306 RRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDT------KLMMER-AVAKGVAYVPGEAFFVHRDKKNTMRLNFT 378 (403)
T ss_dssp HHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTTCCT------TTTHHH-HHHTTEECEEGGGGSTTCCCCSEEEEECS
T ss_pred HHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCCCCH------HHHHHH-HHHCCEEEEechhhcCCCCCCCEEEEEec
Confidence 999999999875 67888999999999999986543 356666 55689999999988764 3579999998
Q ss_pred CCCcccHHHHHHHHHHHHHHc
Q 019899 313 SLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 313 ~~~~~~l~~~l~~l~~~~~~~ 333 (334)
..+++++++++++|+++++++
T Consensus 379 ~~~~~~l~~al~rl~~~l~~~ 399 (403)
T d1wsta1 379 YVPEETIREGVRRLAETIKEE 399 (403)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999874
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-44 Score=321.08 Aligned_cols=305 Identities=19% Similarity=0.282 Sum_probs=261.7
Q ss_pred ChhhhhhhhcCCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccc
Q 019899 1 MAGFMSQVLGQAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~ 79 (334)
||+|+.++.+ +.++++ +|++|+|+++++..++.+++++||.|++++|.|+.+..... ..|..++.++.+ ++++.+
T Consensus 72 ia~~~~~~~g--~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~~~~~-~~~~~~ 147 (382)
T d1u08a_ 72 IAQKTERLYG--YQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIA-LSGGIVKRMALQ-PPHFRV 147 (382)
T ss_dssp HHHHHHHHHS--CCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECC-TTTCCC
T ss_pred HHHHHHHHhC--CCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhh-hccccceecccc-cccccC
Confidence 4678888777 667776 59999999999999999999999999999999999999988 888888888765 466788
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
|++++++.+++ +++++++++|+||||.+++.+++++|+++|.+++++++.|++|..+.+.+...........
T Consensus 148 d~~~l~~~~~~------~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~-- 219 (382)
T d1u08a_ 148 DWQEFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ-- 219 (382)
T ss_dssp CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH--
T ss_pred CHHHHhhhhcc------CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccccccccccc--
Confidence 99999988776 8999999999999999999999999999999999999999999998887655444433332
Q ss_pred ccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKK 237 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (334)
..++++++.|+||.++++|+|+||+++ ++++++.+.+... .++.+.+.|.++..++... .+++..+++.+++
T Consensus 220 --~~~~~i~~~s~SK~~~~pG~RiG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~ 293 (382)
T d1u08a_ 220 --LRERAVAVSSFGKTYHMTGWKVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQ 293 (382)
T ss_dssp --HHTTEEEEEEHHHHTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHH
T ss_pred --ccCcEEEEeeccccccCCcccchhhhc-cchhHHHHHhhhcccccccccccccccccccccc---hHHHHHHHHHHHh
Confidence 167899999999999999999999998 8888888876543 4678899999999988643 3566788899999
Q ss_pred HHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEEEEecCCC
Q 019899 238 LYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFRCCFTSLT 315 (334)
Q Consensus 238 ~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iRi~~~~~~ 315 (334)
+++.+.+.+...|+++..|.+|+|+|+++|.... .++.+++.+|++++||.+.||+.|+.. ..+++|+|++ .+
T Consensus 294 ~~~~l~~~~~~~g~~~~~p~gg~~~~~~~~~~~~----~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~-~~ 368 (382)
T d1u08a_ 294 KRDILVNALNESRLEILPCEGTYFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA-KK 368 (382)
T ss_dssp HHHHHHHHTTSSSCEECCCCBSSEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC-SC
T ss_pred hhhhhhhhhccCCcEEecCCceEEEEEecCCCCC----CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe-CC
Confidence 9999999998889999999999999999986432 256789999999999999999999764 3478999998 68
Q ss_pred cccHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQK 328 (334)
Q Consensus 316 ~~~l~~~l~~l~~ 328 (334)
++++++++++|++
T Consensus 369 ~e~l~~al~RL~~ 381 (382)
T d1u08a_ 369 ESTLLAAAERLRQ 381 (382)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 8999999999875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-43 Score=314.72 Aligned_cols=305 Identities=21% Similarity=0.352 Sum_probs=251.0
Q ss_pred ChhhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 1 MAGFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 1 i~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
||+|+.+..+ +.+++++|++|+|+++++..++.+++++||.|++++|+|+.+...+. ..|..++.++...++ +..+
T Consensus 73 ia~~~~~~~g--~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~-~~g~~~~~~~~~~~~-~~~~ 148 (389)
T d2gb3a1 73 FASYYKRRQR--VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAK-IAGVKLIPVTRRMEE-GFAI 148 (389)
T ss_dssp HHHHHHHTSC--CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-HHTCEEEEEECCGGG-TSCC
T ss_pred HHHHHHHhcC--CCcccceEEecccccccccccccccccCCCeEEEeCCCCcccccccc-ccCcccccccccccc-ccch
Confidence 4677777666 77899999999999999999999999999999999999999999998 889999999875433 3334
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
.+.+.+.+.+ +++++++++|+||||.+++.+++++|+++|++++++||+||+|+.+.+.+....... .
T Consensus 149 ~~~~~~~~~~------~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~-~----- 216 (389)
T d2gb3a1 149 PQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALS-I----- 216 (389)
T ss_dssp CTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGG-S-----
T ss_pred hhhhhhhccc------CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccc-c-----
Confidence 4445544443 889999999999999999999999999999999999999999999998765433322 1
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc-ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR-FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
..++++++.|+||.++++|+|+||++++++.+.+.+..... .++.+.+.+.++..++... +++++++++.+++++
T Consensus 217 -~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~ 292 (389)
T d2gb3a1 217 -ESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERV 292 (389)
T ss_dssp -CCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHH
T ss_pred -ccccccccccccccccCcccceeeeeccchhHHHHHhhhhhcccccccccccccccccccc---chhcccccccccccc
Confidence 26788889999999999999999999977777766655443 4556677777777777653 456788888999999
Q ss_pred HHHHHHHHhCCCc-ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHh-----cCeEEcCCCCcCCC---CCCeEEEE
Q 019899 240 DSFVAGLKQLGIR-CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNI-----AKINVTPGSACHCI---EPGWFRCC 310 (334)
Q Consensus 240 ~~~~~~l~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~~g~~~~~~---~~~~iRi~ 310 (334)
+.+.+.|+++|+. +..|.+|+|+|+++|.. ++.+++.+|+++ .||.+.||+.|+.. .++++||+
T Consensus 293 ~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~-------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis 365 (389)
T d2gb3a1 293 ETVLKKLEEHGLKRFTKPSGAFYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA 365 (389)
T ss_dssp HHHHHHHHHTTCCCBCCCSBSSEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE
T ss_pred hhhhhhhhhhccccccCCCceEEEEEeCCCC-------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE
Confidence 9999999999764 66889999999999853 456888888875 47789999988653 25799999
Q ss_pred ecCCCcccHHHHHHHHHHHHHHc
Q 019899 311 FTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 311 ~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
++ .+++++++++++|++++++.
T Consensus 366 ~~-~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 366 CV-LEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp CC-SCHHHHHHHHHHHHHHHHHH
T ss_pred Ec-CCHHHHHHHHHHHHHHHHHh
Confidence 98 78899999999999998863
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1e-43 Score=315.41 Aligned_cols=298 Identities=23% Similarity=0.404 Sum_probs=251.9
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCC-CCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRS-TDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~~~~~~ 83 (334)
+++.+++.+++++++|++|+|+++++..++.+++.+||.|++++|+|+.+...+. ..|.+++.++++. .+++.+|++.
T Consensus 66 lr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~d~~~ 144 (368)
T d1v2da_ 66 LREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF-LAGAKARLVRLDLTPEGFRLDLSA 144 (368)
T ss_dssp HHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECEEETTEEECCHHH
T ss_pred HHHHHHhhcccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHH-hcCCccceeccccccccccCCHHH
Confidence 4555566677899999999999999999999999999999999999999999998 8999999888743 4667899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
+++++++ +++++++++|+||||.+++.+++++|+++|++|++++|+|++|..+.+........... .
T Consensus 145 l~~~~~~------~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~-------~ 211 (368)
T d1v2da_ 145 LEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA-------P 211 (368)
T ss_dssp HHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC-------T
T ss_pred HHHhhcc------CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccccc-------c
Confidence 9999876 78899999999999999999999999999999999999999998876654433322221 5
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDS 241 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (334)
++.+++.|+||.++++|+|+||+++ ++++.+.+.+... ..+.+++.|.++..++..... .+++.+.++.+++++++
T Consensus 212 ~~~~~~~~~sk~~~~~G~R~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 289 (368)
T d1v2da_ 212 ERTFTVGSAGKRLEATGYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDL 289 (368)
T ss_dssp TTEEEEEEHHHHTTCGGGCCEEEEC-CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred cccceeecccccccccccccccccc-cccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhh
Confidence 6778889999999999999999998 7777777776544 456788888888888866543 45678888999999999
Q ss_pred HHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC--CCCeEEEEecCCCcccH
Q 019899 242 FVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI--EPGWFRCCFTSLTHEDI 319 (334)
Q Consensus 242 ~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~~iRi~~~~~~~~~l 319 (334)
+.+.|+++|+++..|++++|+|+++|.. +. .++++++||.+.||+.|+.. .++++|+|++ .+++++
T Consensus 290 l~~~l~~~g~~~~~p~g~~~~~~~l~~~-------~~----~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~-~~~e~i 357 (368)
T d1v2da_ 290 LAGGLRAMGLRVYVPEGTYFLMAELPGW-------DA----FRLVEEARVALIPASAFYLEDPPKDLFRFAFC-KTEEEL 357 (368)
T ss_dssp HHHHHHHTTCCEECCSBSSEEEEECTTC-------CH----HHHHHHTCEECEEGGGGCSSSCCTTEEEEECC-SCHHHH
T ss_pred hhhhHHhcCcEEecCCceeEEEEeCCcc-------HH----HHHHHhCCEEEEechhhCCCCCCCCEEEEEec-CCHHHH
Confidence 9999999999999999999999999752 11 23577899999999988754 3589999998 688999
Q ss_pred HHHHHHHHHHH
Q 019899 320 PLVIERIQKVA 330 (334)
Q Consensus 320 ~~~l~~l~~~~ 330 (334)
++++++|++++
T Consensus 358 ~~ai~rL~~~l 368 (368)
T d1v2da_ 358 HLALERLGRVV 368 (368)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999874
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.3e-41 Score=300.43 Aligned_cols=293 Identities=18% Similarity=0.307 Sum_probs=239.3
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITAL 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l 84 (334)
+++.+++.+++++++|++++|+++++..++..+. ++.+++..|.|..|..... ..+.+++.+++..++++.++ +++
T Consensus 62 Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~--~~~~~v~~p~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~-~~~ 137 (355)
T d1lc5a_ 62 LHQALARHHQVPASWILAGNGETESIFTVASGLK--PRRAMIVTPGFAEYGRALA-QSGCEIRRWSLREADGWQLT-DAI 137 (355)
T ss_dssp HHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--CSEEEEEESCCTHHHHHHH-HTTCEEEEEECCGGGTTCCC-TTH
T ss_pred HHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhc--cccccccCCccceeccccc-cccccceeeeeeccCCccce-eee
Confidence 4444555567889999999999999998887764 4556677899998888877 88999999999777777766 445
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKD 164 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (334)
++.+.. +++++++++|+||||.+++.+++++|+++|++|++++|+||+|..+.+.+........ +.+
T Consensus 138 ~~~~~~------~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~-------~~~ 204 (355)
T d1lc5a_ 138 LEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALK-------DNP 204 (355)
T ss_dssp HHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCT-------TCT
T ss_pred eecccc------ccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccccccccc-------ccc
Confidence 555443 8999999999999999999999999999999999999999999998776544333221 268
Q ss_pred cEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 165 RVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 165 ~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++++.|+||.+|++|+|+||++++++.+.+.+++....+..+.+.+.++..+++..+ +..+.++.++++++++.+
T Consensus 205 ~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~~~~~~~ 280 (355)
T d1lc5a_ 205 HIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSA----WQQATWHWLREEGARFYQ 280 (355)
T ss_dssp TEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHH----HHHHHHHHHHHHHHHHHH
T ss_pred cceeecccccccccccccccceeccchhhhHHHHhhcCCccccccccccccccccccc----hhHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999997777878888777778899999999999998744 345667788888999999
Q ss_pred HHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHH
Q 019899 245 GLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVI 323 (334)
Q Consensus 245 ~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l 323 (334)
.|.++ ++.+ .|.+++|+|++++.. +.++++.|+ ++||.++||..|+...++++||+++ +++++++++
T Consensus 281 ~l~~~~~~~~-~p~~~~f~~~~~~~~--------~~~~~~~L~-~~gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li 348 (355)
T d1lc5a_ 281 ALCQLPLLTV-YPGRANYLLLRCERE--------DIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLL 348 (355)
T ss_dssp HHHTSTTEEE-CCCSSSEEEEEESCT--------TCCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHH
T ss_pred HHhhcCCcEE-CCCCCEEEEEECCCC--------HHHHHHHHH-HCCcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHH
Confidence 99987 5554 566788899998752 246777755 5799999999887666789999997 789999999
Q ss_pred HHHHHHH
Q 019899 324 ERIQKVA 330 (334)
Q Consensus 324 ~~l~~~~ 330 (334)
++|++++
T Consensus 349 ~aL~~il 355 (355)
T d1lc5a_ 349 AALRNVL 355 (355)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999874
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.5e-41 Score=296.07 Aligned_cols=288 Identities=22% Similarity=0.331 Sum_probs=235.7
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCC-eEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGN-ALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd-~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+++.+++.+++++++|++|+|+++++..++.+++++|| +|++++|+|+.+...++ ..|.+++.++. ++++.+|+++
T Consensus 61 Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~-~~g~~v~~~~~--~~~~~~d~~~ 137 (354)
T d1fg7a_ 61 VIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-TIGVECRTVPT--LDNWQLDLQG 137 (354)
T ss_dssp HHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-HHTCEEEECCC--CTTSCCCHHH
T ss_pred HHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhh-ccCceeecccc--ccccccchhh
Confidence 45555566678999999999999999999999999998 58889999999999998 89999998887 5678999999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDK 163 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (334)
++++++ +++++++++|+||||.+++.++++.+.+.++ ++.++++||+|.++.+..... .. .. ..
T Consensus 138 l~~~~~-------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~-~~---~~----~~ 201 (354)
T d1fg7a_ 138 ISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLA-GW---LA----EY 201 (354)
T ss_dssp HHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSG-GG---TT----TC
T ss_pred hhhccc-------ccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccccccc-hh---hc----cc
Confidence 987663 7899999999999999999999998888775 677788899988876533221 11 11 27
Q ss_pred CcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 019899 164 DRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFV 243 (334)
Q Consensus 164 ~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (334)
++++++.||||.+|++|+|+||+++ ++++++.+.+....+..+.+.+.++..++.... ..+.....+++.++++.+.
T Consensus 202 ~~~iv~~S~SK~~~laGlRiGy~i~-~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~r~~l~ 278 (354)
T d1fg7a_ 202 PHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQG--IVAMRERVAQIIAEREYLI 278 (354)
T ss_dssp TTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEeCCccccCCCccccccccc-cchhhhhhhhhcCccchhhHHHHHHHHHHhhhc--cccccccchhhhhHHHHHH
Confidence 8889999999999999999999998 899999999888888889888887777765533 2334556677888889999
Q ss_pred HHHHhCCC-cccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHH
Q 019899 244 AGLKQLGI-RCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLV 322 (334)
Q Consensus 244 ~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~ 322 (334)
+.+.+.+. ....|.+++|+|++++. +.++++.|+ ++||.++++..+. ..++|+|++++ ++++.+++
T Consensus 279 ~~l~~~~~~~~~~p~~~~f~~~~~~~---------~~~~~~~L~-~~gIlvr~~~~~~-~~~~~lRisig--t~ee~~~~ 345 (354)
T d1fg7a_ 279 AALKEIPCVEQVFDSETNYILARFKA---------SSAVFKSLW-DQGIILRDQNKQP-SLSGCLRITVG--TREESQRV 345 (354)
T ss_dssp HHHHHSTTEEEECCCSSSEEEEEETT---------HHHHHHHHH-HTTEECEECTTST-TCTTEEEEECC--CHHHHHHH
T ss_pred HHHHhCCCcceeCCCCceEEEEeCCC---------HHHHHHHHH-HCCcEEecCCCCC-CCCCEEEEEeC--CHHHHHHH
Confidence 99998854 45567788999999873 357888855 5899999987764 24689999998 78889988
Q ss_pred HHHHH
Q 019899 323 IERIQ 327 (334)
Q Consensus 323 l~~l~ 327 (334)
+++|+
T Consensus 346 l~aLk 350 (354)
T d1fg7a_ 346 IDALR 350 (354)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88886
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=1.7e-40 Score=297.71 Aligned_cols=298 Identities=16% Similarity=0.219 Sum_probs=237.9
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcH-----HHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCC
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGAT-----PAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDN 76 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~-----~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~ 76 (334)
++|+.++.+ ..+++++|+.+.++. +++..++.+++++||.|++++|+|++|...++ ..|.+++.+|+.++++
T Consensus 81 a~~~~~~~~--~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~-~~g~~~~~~~~~~~~~ 157 (401)
T d7aata_ 81 AELALGENS--EAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR-DAGLQLQAYRYYDPKT 157 (401)
T ss_dssp HHHHHCTTC--HHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH-HTTCEEEEEECEETTT
T ss_pred HHHHhccCC--cccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHH-HcCCeEEEEecccccc
Confidence 566665544 445677777665543 46677788889999999999999999999999 9999999999987888
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh--hh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM--AE 154 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~--~~ 154 (334)
+..+.+.+.+.+... ..+++++++++|+||||.+++.+++++|+++|++|+++||+||+|..+.|++...... ..
T Consensus 158 ~~~~~~~~~~~~~~~---~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~ 234 (401)
T d7aata_ 158 CSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRH 234 (401)
T ss_dssp TEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred ccccHHHHHHHHhcC---CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhh
Confidence 889999888877532 2478899999999999999999999999999999999999999999999976432222 11
Q ss_pred hhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh---------hcccCCChHHHHHHHHhhCChHH--
Q 019899 155 ILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL---------TRFCSISAPTQRLLISMLSDTKF-- 223 (334)
Q Consensus 155 ~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~-- 223 (334)
... ...+++++.|+||.++++|+|+||++++. .+.+...+. ....+.+...|.+++.++.+..+
T Consensus 235 ~~~----~~~~~~~~~s~sk~~~~~G~RiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 309 (401)
T d7aata_ 235 FIE----QGIDVVLSQSYAKNMGLYGERAGAFTVIC-RDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRK 309 (401)
T ss_dssp HHH----TTCCCEEEEECTTTSCCGGGCEEEEEEEC-SSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHH
T ss_pred hhh----hhcccceeEeccccceeeccccceeecch-HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHH
Confidence 222 25677888999999999999999999843 333332221 22346778888888888887543
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 224 -IQEYLETNKRRIKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
...+...+++++.++++.+.+.|++++ +.+..+.+|||+|+.++ .+++.+|++++||.+.||.
T Consensus 310 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~e~~~~L~~e~gV~~~pg~- 377 (401)
T d7aata_ 310 EWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------PEQVERLTKEFSIYMTKDG- 377 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCC-----------HHHHHHHHHhCCEEECCCc-
Confidence 245567888999999999999999875 45667899999998664 3678898999999999874
Q ss_pred cCCCCCCeEEEEecCCCcccHHHHHHHHHHHHH
Q 019899 299 CHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 299 ~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~ 331 (334)
|||++.+++++++.+.++|.++++
T Consensus 378 ---------Ris~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 378 ---------RISVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp ---------EEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred ---------EEEeccCCHHHHHHHHHHHHHHhC
Confidence 999988899999999999999874
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=3.8e-38 Score=283.04 Aligned_cols=274 Identities=15% Similarity=0.197 Sum_probs=220.2
Q ss_pred HHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC
Q 019899 35 FCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII 114 (334)
Q Consensus 35 ~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~ 114 (334)
..+..+||.|++++|+|+.|...+. ..|.+++.+|+.+++++..+.+.+++.+... .++++++++++||||||.++
T Consensus 118 ~~~~~~gd~Vlip~P~~~~y~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~ 193 (412)
T d1yaaa_ 118 FSKFFPDKLVYLSKPTWANHMAIFE-NQGLKTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDP 193 (412)
T ss_dssp HHHHCTTCCEEEEESCCTTHHHHHH-TTTCCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCC
T ss_pred HhccCCCCEEecccccCchhHHHHH-HcCCceecccccccccccccchhhhcccccC---CCceEEEEecCCCCCccccC
Confidence 3456899999999999999999998 9999999999877788889998888887752 23567899999999999999
Q ss_pred CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh-ccccCCCcEEEEecccccCCCCCceEEEEeecCH--
Q 019899 115 PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE-AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE-- 191 (334)
Q Consensus 115 ~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~-- 191 (334)
+.+++++|+++|+++++++|+||+|.++.|++....+...... +.....++++++.|+||.++++|+|+||++++++
T Consensus 194 s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~ 273 (412)
T d1yaaa_ 194 TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQ 273 (412)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSC
T ss_pred CHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhh
Confidence 9999999999999999999999999999997643332211110 0011267889999999999999999999998532
Q ss_pred ----HHHHHHHH------hhcccCCChHHHHHHHHhhCChHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC----Cccc
Q 019899 192 ----SVLAAAKK------LTRFCSISAPTQRLLISMLSDTKF---IQEYLETNKRRIKKLYDSFVAGLKQLG----IRCS 254 (334)
Q Consensus 192 ----~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~g----~~~~ 254 (334)
...+.+.. .....+.+.+.|.++..++.+..+ ..+++..++++++++++.+.+.|+++| |.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~ 353 (412)
T d1yaaa_ 274 AQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI 353 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcee
Confidence 12222211 123456788999999999887543 345578889999999999999999875 4566
Q ss_pred CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 255 ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 255 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.+.+|||+|+.++ .+++++|++++||.+.||+ ||+++.+++++++.+.+++.++++.+
T Consensus 354 ~~~gG~F~~~~ls-----------~e~~~~L~~e~~V~~~~g~----------Ris~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 354 VNQCGMFSFTGLT-----------PQMVKRLEETHAVYLVASG----------RASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp HHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTS----------EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred CCCceEEEecCcC-----------HHHHHHHHHhCCEEECCCC----------EEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 7889999997664 4778899999999998864 99998789999999999999999865
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-39 Score=291.00 Aligned_cols=299 Identities=15% Similarity=0.136 Sum_probs=232.3
Q ss_pred hhhhhhhhcCCCCCCCCcEEEecCcHHH----HHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPSQIVLTAGATPA----VEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~----~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
|+|+.+..+ ..+++++++.+.+++++ +..++..++++||.|++++|+|++|...++ ..|.+++.+|+..++++
T Consensus 80 a~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~-~~G~~~~~v~~~~~~~~ 156 (397)
T d3tata_ 80 APLLFGADH--PVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFA-GAGFEVSTYPWYDEATN 156 (397)
T ss_dssp HHHHTCSSC--HHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHH-TTTCCCEECCCCCTTTS
T ss_pred HHHHhhccC--CcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHH-HcCCEEEEEecchhhcc
Confidence 455555444 45678888888877764 455556667999999999999999999999 99999999999888888
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
..+.+++.+.+... ..+++++++++|+||||.+++.+++++|+++|+++++++|+||+|+++.|++....+......
T Consensus 157 ~~~~~~~~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 233 (397)
T d3tata_ 157 GVRFNDLLATLKTL---PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIA 233 (397)
T ss_dssp SCCHHHHHHHHTTC---CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHhhhc---ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhh
Confidence 88888888776532 346788999999999999999999999999999999999999999999987543332222221
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHH------HHHHHHh--hcccCCChHHHHHHHHhhCChHHH---HH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV------LAAAKKL--TRFCSISAPTQRLLISMLSDTKFI---QE 226 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~---~~ 226 (334)
...++++.+.|+||.++++|+|+||++++.... ...+... ....+.+...|.++..++...++. .+
T Consensus 234 ---~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 310 (397)
T d3tata_ 234 ---SAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLA 310 (397)
T ss_dssp ---TTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred ---hcCCceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHH
Confidence 125678999999999999999999999743221 1111111 223456778888888888775433 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCC
Q 019899 227 YLETNKRRIKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCI 302 (334)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 302 (334)
++..++++++++++.+.+.|+..+ |.+..+.+|||+|+.++ .+.+.+|++++||.+.||.
T Consensus 311 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~e~~~~L~~e~~V~l~~g~----- 374 (397)
T d3tata_ 311 EVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-----------AAQVDRLREEFGVYLIASG----- 374 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC-----------HHHHHHHTTTTCEECCSSS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcC-----------HHHHHHHHHhCCEEeCCCC-----
Confidence 456677888888888888887763 66678889999998775 3678898999999999874
Q ss_pred CCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 303 EPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 303 ~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
|||++.+++++++++.+++.+++
T Consensus 375 -----Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 375 -----RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp -----CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred -----EEEeccCCHHHHHHHHHHHHHhC
Confidence 89998789999999999998763
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=2.1e-37 Score=278.45 Aligned_cols=290 Identities=17% Similarity=0.210 Sum_probs=222.0
Q ss_pred CCCCc--EEEecCcHHHHHHHHHH-------hcCCCCeEEecCCCCCChhhhhhhccCcEEEEE-eCCCCCCccccHHHH
Q 019899 15 FDPSQ--IVLTAGATPAVEILCFC-------LADHGNALLVPSPYYPGFDRDIRFRTGVELIPV-HCRSTDNFAFSITAL 84 (334)
Q Consensus 15 ~~~~~--i~~~~g~~~~~~~~~~~-------l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v-~~~~~~~~~~~~~~l 84 (334)
++.++ ++.+.+++.++..+... +.++||.|++++|+|++|...++ ..|.+++.+ +..+++.+..|.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~-~~G~~~v~~~~~~~~~~~~~d~~~~ 173 (412)
T d1ajsa_ 95 LQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT-TAGFKDIRSYRYWDTEKRGLDLQGF 173 (412)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH-HTTCSCEEEEECEETTTTEECHHHH
T ss_pred cccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHH-HcCCeEEEeecccccccccccHHHH
Confidence 44554 44455555555554443 36899999999999999999999 888775544 444456667888888
Q ss_pred HHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch--hhhhhhccccC
Q 019899 85 DQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS--MAEILEAEEVD 162 (334)
Q Consensus 85 ~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~--~~~~~~~~~~~ 162 (334)
++.+... ..+++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..... ...... .
T Consensus 174 ~~~~~~~---~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~----~ 246 (412)
T d1ajsa_ 174 LSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS----E 246 (412)
T ss_dssp HHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----T
T ss_pred HHHHHhc---cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhh----h
Confidence 7776542 347788999999999999999999999999999999999999999999987643222 111211 2
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHH-------HHh--hcccCCChHHHHHHHHhhCChH---HHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAA-------KKL--TRFCSISAPTQRLLISMLSDTK---FIQEYLET 230 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~ 230 (334)
...++++.|+||.++++|+|+||++++.+ ..+.+ ... ....+.+...|.++..++.... ...+++..
T Consensus 247 ~~~~~~~~s~sk~~~~~G~R~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (412)
T d1ajsa_ 247 GFELFCAQSFSKNFGLYNERVGNLTVVAK-EPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKT 325 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEEECS-SHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCCccccccchh-HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67788889999999999999999998433 22222 111 2234567788888888887643 23456778
Q ss_pred HHHHHHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCe
Q 019899 231 NKRRIKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306 (334)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~ 306 (334)
++++++++++.+.+.|++++ +.+..+.+|||.|+.++ .+.+.+|++++||.+.||.
T Consensus 326 ~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls-----------~~~v~~L~~e~gV~~vpg~--------- 385 (412)
T d1ajsa_ 326 MADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------PKQVEYLINQKHIYLLPSG--------- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHTTCEECCTTS---------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCC-----------HHHHHHHHHhCCEEEeCCC---------
Confidence 89999999999999999985 44567789999987653 3667888999999999874
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHHcC
Q 019899 307 FRCCFTSLTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 307 iRi~~~~~~~~~l~~~l~~l~~~~~~~~ 334 (334)
||+++..+++++++++++|.+++++.|
T Consensus 386 -Ri~~ag~~~~~i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 386 -RINMCGLTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp -EEEGGGCCTTTHHHHHHHHHHHHHHCC
T ss_pred -eEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 999987899999999999999999875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-37 Score=278.70 Aligned_cols=298 Identities=16% Similarity=0.190 Sum_probs=226.8
Q ss_pred hhhhhhhhcCCCCCCCCc--EEEecCcHHHHHHHHH--HhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCc
Q 019899 2 AGFMSQVLGQAVSFDPSQ--IVLTAGATPAVEILCF--CLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--i~~~~g~~~~~~~~~~--~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~ 77 (334)
++|+.++.+ ....++. ++.+.+++.++.+++. ...++||.|++|+|+|++|...++ ..|.+++.+++..++++
T Consensus 79 a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~-~~g~~~~~~~~~~~~~~ 155 (396)
T d2q7wa1 79 QELLFGKGS--ALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-SAGLEVREYAYYDAENH 155 (396)
T ss_dssp HHHHHCTTC--HHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-HTTCEEEEEECEETTTT
T ss_pred HHHHHhhcC--CcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHH-HcCCeeEeccccccccc
Confidence 455554433 2233443 3455566555554443 446899999999999999999999 99999999998777777
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
..+...+++.... ...+++++++++|+||||.+++.+++++|+++|++|+++||+||+|+++.|++...........
T Consensus 156 ~~~~~~~~~~~~~---~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 232 (396)
T d2q7wa1 156 TLDFDALINSLNE---AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFA 232 (396)
T ss_dssp EECHHHHHHHHTT---CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHH
T ss_pred ccccchHHHHHHH---hccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhh
Confidence 7777777766543 2346788999999999999999999999999999999999999999999987543333222211
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh---------hcccCCChHHHHHHHHhhCChHH---HH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL---------TRFCSISAPTQRLLISMLSDTKF---IQ 225 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~---~~ 225 (334)
+ ..+..+++.|+||.++++|+|+||++++.. ..+..... ....+.+...|.++..++..... ..
T Consensus 233 --~-~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 308 (396)
T d2q7wa1 233 --A-MHKELIVASSYSKNFGLYNERVGACTLVAA-DSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWE 308 (396)
T ss_dssp --H-HCSCEEEEEECTTTTTCGGGCCEEEEEECS-SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred --h-hcccccccccccccccccCCCccccccchh-HHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHH
Confidence 1 157778889999999999999999998543 33333221 22345677788888888876432 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
+++.+++++++++++.+.+.|++++ +....+.+|+|.|+.++ .+.+.+|++++||.+.||+
T Consensus 309 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~-----------~e~~~~L~~e~gV~~~~g~---- 373 (396)
T d2q7wa1 309 QELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT-----------KEQVLRLREEFGVYAVASG---- 373 (396)
T ss_dssp HHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC-----------HHHHHHHHHhCCEEECCCC----
Confidence 6678899999999999999999986 44557789999998664 3678898999999998865
Q ss_pred CCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 302 IEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 302 ~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
|||++.+++++++++.++|.+++
T Consensus 374 ------Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 374 ------RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp ------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred ------EEEecCCCHHHHHHHHHHHHHhC
Confidence 99998789999999999998864
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-36 Score=264.80 Aligned_cols=261 Identities=16% Similarity=0.210 Sum_probs=209.2
Q ss_pred CCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 14 ~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
++++++|++|+|+++++..++. .+|+|++++|+|+.+...++ ..|.+++.+|++++.. .+ ++.
T Consensus 73 ~v~~d~I~it~G~~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~-~~g~~~v~v~~~~~~~--~~-----~~~----- 135 (334)
T d2f8ja1 73 FLSKNNVSVGNGADEIIYVMML----MFDRSVFFPPTYSCYRIFAK-AVGAKFLEVPLTKDLR--IP-----EVN----- 135 (334)
T ss_dssp SCCGGGEEEEEHHHHHHHHHHH----HSSEEEECSSCCHHHHHHHH-HHTCCEEECCCCTTSC--CC-----CCC-----
T ss_pred CCCcceEEecCcchhHHHHHhh----hccccccccccccccccchh-ccCCcccccccccccc--cc-----ccc-----
Confidence 4689999999999999887765 46899999999999999998 8999999999854322 21 111
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
..+++++++++|+||||.+++.+++.+ +.++++++|+||+|..+.+..... ... ..++++++.|+|
T Consensus 136 -~~~~~~l~l~nP~NPtG~~~s~~~l~~----~~~~~~~ii~Dd~~~~~~~~~~~~----~~~-----~~~~~i~~~S~S 201 (334)
T d2f8ja1 136 -VGEGDVVFIPNPNNPTGHVFEREEIER----ILKTGAFVALDEAYYEFHGESYVD----FLK-----KYENLAVIRTFS 201 (334)
T ss_dssp -CCTTEEEEEESSCTTTCCCCCHHHHHH----HHTTTCEEEEECTTGGGTCCCCGG----GGG-----TCSSEEEEEEST
T ss_pred -cccceEEEecccccccceeecHHHhhc----cccceeEEeecccchhhccccccc----ccc-----cCceEEEEecCc
Confidence 136789999999999999999666544 346899999999998755432221 111 278999999999
Q ss_pred ccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 019899 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRC 253 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 253 (334)
|+++++|+|+||+++ ++.+++.+......++.+..++.++..++... +++.+.++.+.++++++.+.|+++|+++
T Consensus 202 K~~~~~G~R~G~~~~-~~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~ 276 (334)
T d2f8ja1 202 KAFSLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYRI 276 (334)
T ss_dssp TTSSCTTTCEEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred cccchhhhhhhhccc-chHHHHHHHHhhcccccchhhhhhcccccccc----cchhhHHHHHHHHHHHHHHHHHHCCCeE
Confidence 999999999999999 89999999988888889999999888888664 4456677888999999999999999998
Q ss_pred cCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHHHHHHHHHH
Q 019899 254 SESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIPLVIERIQK 328 (334)
Q Consensus 254 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~ 328 (334)
..+.++ |+|+.++.. ++.++.+.|+ ++||.++++ ++++|+|++ +++|+++++++|++
T Consensus 277 ~~~~g~-f~~~~~~~~-------~~~~~~~~L~-~~GI~vr~~-------~~~vRis~g--~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 277 TDSRGN-FVFVFMEKE-------EKERLLEHLR-TKNVAVRSF-------REGVRITIG--KREENDMILRELEV 333 (334)
T ss_dssp CCCCSS-EEEEECCHH-------HHHHHHHHHH-HTTEECEEE-------TTEEEEECC--CHHHHHHHHHHHHH
T ss_pred CCCCce-EEEEECCCC-------CHHHHHHHHH-HCCCEECCC-------CCeEEEEcC--CHHHHHHHHHHHhc
Confidence 877666 678887753 5567888855 579998652 479999998 77888999888875
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=9.7e-36 Score=266.11 Aligned_cols=282 Identities=16% Similarity=0.180 Sum_probs=217.7
Q ss_pred cEEEecCcHHH--HHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 19 QIVLTAGATPA--VEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 19 ~i~~~~g~~~~--~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
..+++.|++.+ +.+.+..+.++||.|++|+|+|++|...++ ..|.+++.+++..++.+..+.+.+++..... ..
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~ 168 (394)
T d2ay1a_ 93 ATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMN-FMGLPVQTYRYFDAETRGVDFEGMKADLAAA---KK 168 (394)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-HHTCCEEEEECEETTTTEECHHHHHHHHHTC---CT
T ss_pred cceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHH-HcCCEEEEecccchhcccccchhHHHHHhhc---cc
Confidence 34444444434 555566678999999999999999999999 9999999999876677777777777765532 23
Q ss_pred ceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccC
Q 019899 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDL 176 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~ 176 (334)
+++++++++||||||.+++.+++++|+++|++++++||+||+|+++.|++........... .+...++++.|+||.+
T Consensus 169 ~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~---~~~~~~~~~~s~sk~~ 245 (394)
T d2ay1a_ 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIA---SRIPEVLIAASCSKNF 245 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHH---HHCSSEEEEEECTTTT
T ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhh---hhcccccccccccccc
Confidence 5777888899999999999999999999999999999999999999987543333322221 1156778888999999
Q ss_pred CCCCceEEEEeecCHHHHHHHHH---------hhcccCCChHHHHHHHHhhCChHH---HHHHHHHHHHHHHHHHHHHHH
Q 019899 177 SLPGFRTGVIYSYNESVLAAAKK---------LTRFCSISAPTQRLLISMLSDTKF---IQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 177 ~~~g~r~g~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+++|+|+||++++.. ..+...+ .......+...+..+..++.+..+ ..+++..+++++.++++.+.+
T Consensus 246 ~~~G~R~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~ 324 (394)
T d2ay1a_ 246 GIYRERTGCLLALCA-DAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAG 324 (394)
T ss_dssp TCGGGCEEEEEEECS-SHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccchhhchh-HHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998443 2222221 122235566777777777766432 345667888999999999999
Q ss_pred HHHhCC----CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcccHH
Q 019899 245 GLKQLG----IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHEDIP 320 (334)
Q Consensus 245 ~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~~l~ 320 (334)
.|++++ |.+..+.+|||+|+.++ .+.+++|++++||.+.||. |||++.+++++++
T Consensus 325 ~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~~~~~~L~~~~~V~~~~g~----------Ri~~a~l~~~~i~ 383 (394)
T d2ay1a_ 325 ELRDLSGSDRFGFVAEHRGMFSRLGAT-----------PEQVKRIKEEFGIYMVGDS----------RINIAGLNDNTIP 383 (394)
T ss_dssp HHHHHHTSSTTTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTC----------EEEGGGCCTTTHH
T ss_pred HHHHhCCCCceeeECCCceeEEecCcC-----------HHHHHHHHHhCCEEecCCC----------EEEecCCCHHHHH
Confidence 998863 56677889999998765 3678898999999999864 9999888999999
Q ss_pred HHHHHHHHH
Q 019899 321 LVIERIQKV 329 (334)
Q Consensus 321 ~~l~~l~~~ 329 (334)
++.++|.++
T Consensus 384 ~l~~ai~~v 392 (394)
T d2ay1a_ 384 ILARAIIEV 392 (394)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988875
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=3.5e-36 Score=268.34 Aligned_cols=271 Identities=17% Similarity=0.199 Sum_probs=208.0
Q ss_pred CCCCcEEEecCcHHHHHHHHHHh--------cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHH
Q 019899 15 FDPSQIVLTAGATPAVEILCFCL--------ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQ 86 (334)
Q Consensus 15 ~~~~~i~~~~g~~~~~~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~ 86 (334)
.+..+|++++|+++++++++++| .++||+|+++.|+|+.|....+ ..+.+.+. +.+|.+.+++
T Consensus 121 t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~-~~~~~~~~--------~~~D~~~~~~ 191 (425)
T d2hoxa1 121 AKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK-YFDKKGYV--------WAGNAANYVN 191 (425)
T ss_dssp CTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHH-HSCBTTEE--------EEEEGGGGTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHH-HcCCCCCc--------cCCCHHHHHh
Confidence 34457999999999999999999 4688999999999999998888 76654433 4457777777
Q ss_pred HHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcE
Q 019899 87 AFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRV 166 (334)
Q Consensus 87 ~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (334)
++++ +++++++++||||||.+.. +..+++.+|.||+|....| .++.. ..+++
T Consensus 192 ~~~~------~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f-----~~~~~-------~~~~~ 243 (425)
T d2hoxa1 192 VSNP------EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHY-----TPIKY-------KADED 243 (425)
T ss_dssp CSCG------GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTT-----SCCCS-------CBCCS
T ss_pred hCCC------CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccc-----cchhh-------hcCCe
Confidence 7665 8899999999999998743 3346999999999964332 22211 16788
Q ss_pred EEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc--ccCCChHHHHHHHHhhCChH-H-------HHHHHHHHHHHHH
Q 019899 167 HIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR--FCSISAPTQRLLISMLSDTK-F-------IQEYLETNKRRIK 236 (334)
Q Consensus 167 ~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-~-------~~~~~~~~~~~~~ 236 (334)
+++.|+||.+|++|+|+||++++++.+.+.+.+... ..+++.+.|.++..+++... + ..+++...++.++
T Consensus 244 Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (425)
T d2hoxa1 244 ILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLR 323 (425)
T ss_dssp EEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHH
T ss_pred EEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988878889888876543 46788999998888875421 1 1234567788889
Q ss_pred HHHHHHHHHHHhCCC-ccc--------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC
Q 019899 237 KLYDSFVAGLKQLGI-RCS--------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC 301 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~-~~~--------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~ 301 (334)
++++.+.+.|++.+. .+. .+..+.|.|+++... ..+.+..+++++||.++||..||.
T Consensus 324 ~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~--------~~~~~~~lL~e~gI~v~pGs~FG~ 395 (425)
T d2hoxa1 324 ERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE--------EDKDCYQTFQNGRINTQNGVGFEA 395 (425)
T ss_dssp HHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG--------GGCSHHHHHHHTTEECEEGGGGTS
T ss_pred HHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC--------hHHHHHHHHHhCCEEEEechhcCC
Confidence 999999999988642 211 233344567766542 123455668889999999999984
Q ss_pred CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 302 IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 ~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
.++|+|||+. .+++++++++++|+++++.
T Consensus 396 -~~~yvRisl~-~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 396 -SSRYVRLSLI-KTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp -CTTEEEEECS-SCHHHHHHHHHHHHHHHTC
T ss_pred -CCCEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 4689999998 7888999999999999864
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=3.6e-30 Score=227.30 Aligned_cols=299 Identities=18% Similarity=0.222 Sum_probs=205.3
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+++++++++.++ .+++++|+|+++|+.+++.+++++||+|+++.++|++....++ ..|.+++.+|..+..++.+|++
T Consensus 50 ~~~~~~~A~~~g--~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~-~~g~~v~~v~~~~~~~~~i~~~ 126 (364)
T d2e7ja1 50 DFIHNQLPKFLG--CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-RAGLNIALVPKTDYPDYAITPE 126 (364)
T ss_dssp HHHHTHHHHHTT--SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-HTTCEEEEECCCCTTTCCCCHH
T ss_pred HHHHHHHHHHhC--cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHH-hccceEEEeeeccccccccCHH
Confidence 556677776665 5789999999999999999999999999999999999988888 8999999999876677899999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
++++++++..+. .++++|++++|+||||.+.| +++|+++|++||+++++|++|+.... ..+...
T Consensus 127 ~l~~~i~~~~k~-~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~----~~~~~~-------- 190 (364)
T d2e7ja1 127 NFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM----PVSLKE-------- 190 (364)
T ss_dssp HHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB----CCCHHH--------
T ss_pred HHHhhhhhhccc-CCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh----hhcccc--------
Confidence 999999875332 25678999999999999999 89999999999999999999975322 223332
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc----------cCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF----------CSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
.+.++++.|+||+++.+| ++||++. ++++.+.+...... ...+.....++...+. ...+.+....
T Consensus 191 ~g~D~~~~S~~K~~~~~g-~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~ 265 (364)
T d2e7ja1 191 IGADFIVGSGHKSMAASG-PIGVMGM-KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP---HVRERIKRWD 265 (364)
T ss_dssp HTCSEEEEEHHHHSSCCS-SCEEEEE-CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH---HHHHHGGGHH
T ss_pred cccceeeeccccccCCCC-CEEEEEE-CHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHH---HHHHHHHHHH
Confidence 345678899999998665 7899998 66655544322111 1112222333333321 2223333333
Q ss_pred HHHHHHHHHHHHHHHhCCCcccC--CCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeEEc-CCCCcCCCCCCeE
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSE--SSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKINVT-PGSACHCIEPGWF 307 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~-~g~~~~~~~~~~i 307 (334)
+. .++.+++.+.|++.|+.... +......++..+.... ....... .+....+...++... +|. ...+
T Consensus 266 ~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~------~~~~ 337 (364)
T d2e7ja1 266 EE-VEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGR-FFLYRELKSRKIHGIKPGL------TRYF 337 (364)
T ss_dssp HH-HHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGG-GHHHHHHHHTTEECSCTTC------CSEE
T ss_pred HH-HHHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhccc-hHHHHHHHhcCCceecCCC------cceE
Confidence 33 35666788888888876542 2233333344332100 0000011 123333555676532 222 4567
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 308 RCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 308 Ri~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
|++....+++|+++++++|+++++++
T Consensus 338 ~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 338 KLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 87754478999999999999999885
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=5e-29 Score=219.61 Aligned_cols=285 Identities=14% Similarity=0.081 Sum_probs=191.8
Q ss_pred CCCcEEEecCcHHHHHHHHHHhcCCCCeEEec-CCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHc
Q 019899 16 DPSQIVLTAGATPAVEILCFCLADHGNALLVP-SPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKR 94 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~-~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~ 94 (334)
+.+++++++|+++|+..++.++.++++.|+++ .|+|+++...++ ..|++++.+. |++++++++++
T Consensus 67 ~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~-l~g~~~v~~~---------d~e~l~~~i~~---- 132 (366)
T d2aeua1 67 ENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCK-IVNAKYFESD---------KVGEILNKIDK---- 132 (366)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHHH-HTTCEEEEES---------CHHHHHTTCCT----
T ss_pred CccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHHH-hcCCeEECCC---------CHHHHHHhcCC----
Confidence 45689999999999999999987655555554 589999999999 8898764322 78999998886
Q ss_pred CCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 95 GVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 95 ~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
++++|++++|+||+ +++.+++++|+++|++||+++++||+|+...+.......... .+.+++++|+||
T Consensus 133 --~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~--------~~~di~~~S~sK 200 (366)
T d2aeua1 133 --DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK--------LGADLVVTSTDK 200 (366)
T ss_dssp --TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH--------HTCSEEEEETTS
T ss_pred --CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhh--------cCceEEEecccc
Confidence 89999999998885 467788999999999999999999999876553222222111 345688899999
Q ss_pred cCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChH--HHHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 019899 175 DLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTK--FIQEYLETNKRRIKKLYDSFVAGLKQL- 249 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~- 249 (334)
.+ +|+|+||+++ ++++++.++..... ++.+++.+.++...++... -+++..++.++......+.+.......
T Consensus 201 ~~--~g~~~G~i~~-~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 277 (366)
T d2aeua1 201 LM--EGPRGGLLAG-KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAID 277 (366)
T ss_dssp SS--SSCSCEEEEE-EHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTC
T ss_pred cc--cccceeEEEe-cHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 77 5788999998 88999998876544 3567777877776664321 112222221111111222222222221
Q ss_pred CC--cccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecCCCcc--cHHHHHHH
Q 019899 250 GI--RCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTSLTHE--DIPLVIER 325 (334)
Q Consensus 250 g~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~--~l~~~l~~ 325 (334)
++ ....+.+.+++|...+.... ....+..+++.+|++++||.+.||..|. ..++++||+++..+.+ +.+.+++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~Ll~~~gV~~ip~~~~p-~~~~~lRis~~~~~~~~i~~d~l~~a 355 (366)
T d2aeua1 278 DNINIVYERTPTGFVIKRVYKDDT-INIKKLIEIGFNLLKNYGIITITVAGMP-GASKSLRIDLTSRDAERIDDNYIIKA 355 (366)
T ss_dssp TTEEEEEEECSSEEEEEEEESSHH-HHHHHHHHHHHHHHHHHCEECSTTSSSC-SSCCSEEEETTSGGGGGSCHHHHHHH
T ss_pred cccCcccccCccchhccCCCccee-ecccCHHHHHHHHHHhCCEEEEECCCCC-CCCCEEEEeccccchhhCCHHHHHHH
Confidence 11 12233345555555443211 1123456789999999999999998874 3567999999842222 34555666
Q ss_pred HHHHHH
Q 019899 326 IQKVAE 331 (334)
Q Consensus 326 l~~~~~ 331 (334)
+.+.++
T Consensus 356 i~~~lK 361 (366)
T d2aeua1 356 IVESIK 361 (366)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.95 E-value=1.3e-27 Score=212.11 Aligned_cols=288 Identities=18% Similarity=0.254 Sum_probs=197.2
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCcccc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~ 80 (334)
+++.+++.+++++++|++|+|+|++++.++.++ .++||+|+++.+.|++....+. ...|.+++.+|.+........
T Consensus 55 ~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 134 (381)
T d1elua_ 55 LRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDA 134 (381)
T ss_dssp HHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCH
T ss_pred HHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchH
Confidence 455667778899999999999999999999998 6899999999999987666544 146899999997533322233
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh----cCcEEEEeccccccccCCCCcchhhhhh
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFARE----KNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~----~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
.+.+++++++ +++++++++++||||.+.| +++|.++|++ +++++++|.+++.. ..+..+..
T Consensus 135 ~~~l~~~i~~------~t~~v~i~~~~n~tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~g----~~~~~~~~-- 199 (381)
T d1elua_ 135 AAVLANHLGP------KTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAG----SLPLDFSR-- 199 (381)
T ss_dssp HHHHHTTCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBT----TBCCCTTT--
T ss_pred HHHHHhhhcc------cccccccccccccccccch---hhHHHHHHhhcccccccccccccccccc----cccccccc--
Confidence 4555555554 8999999999999999999 7777888877 47999999998752 22223221
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh------------------------cccCCChHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT------------------------RFCSISAPTQR 212 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 212 (334)
.+.++++.|++|+++ .+.++|+++. +++..+.+.... ..++.+.....
T Consensus 200 ------~~~D~~~~s~~K~~~-~p~G~g~l~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 271 (381)
T d1elua_ 200 ------LEVDYYAFTGHKWFA-GPAGVGGLYI-HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYA 271 (381)
T ss_dssp ------SCCSEEEEESSSTTC-CCTTCEEEEE-CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHH
T ss_pred ------ccccccccccccccc-ccchhhHHHh-hHHHHHhcCcccccccccccccccccccccccccccccccccchhhh
Confidence 466788999999996 3345788887 555544432110 01133444444
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC---CCceeEEeeecCCcCCCCChhhHHHHHHHHHHh
Q 019899 213 LLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE---SSAGLYCWADMSGLIPSYSEKGELELWDKLLNI 288 (334)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (334)
++.+++..... ....+.+.++..++++++.+.|+++ |+++.. +.++ ++++.++.... ..++... |++
T Consensus 272 ~~~~a~~~~~~-~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~~~------~~~i~~~-L~~ 342 (381)
T d1elua_ 272 GLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSPLG------HRAIVQK-LEE 342 (381)
T ss_dssp HHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSSSC------HHHHHHH-HHH
T ss_pred hhhhhhhhHHH-hcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCCCC------HHHHHHH-HHh
Confidence 45444432211 1112344567778888999999987 666653 3344 34455554322 3455555 777
Q ss_pred cCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHH
Q 019899 289 AKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 289 ~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
+||.++... .++++|+|++. .|++|++++++.|+++
T Consensus 343 ~gi~v~~~~-----~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 343 QRIYLRTIA-----DPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp TTEECEEET-----TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CCcEEEecC-----CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 999875421 36799999985 5899999999999864
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.6e-27 Score=210.85 Aligned_cols=291 Identities=17% Similarity=0.173 Sum_probs=199.4
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCcc
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNFA 78 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~~ 78 (334)
.++.+++.+++++++|++++|+|++++.++.++ .++||+|+++++.|+++...++. ..|.+++.+|.+ ..+.
T Consensus 53 ~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ 130 (391)
T d1p3wa_ 53 ARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGI 130 (391)
T ss_dssp HHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSC
T ss_pred HHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCC--CCCe
Confidence 455666777899999999999999999888765 47999999999999987665541 369999999984 4457
Q ss_pred ccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhc
Q 019899 79 FSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEA 158 (334)
Q Consensus 79 ~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
+|++++++++++ ++++|++++++||||.++| +++|+++|+++|+++++|.+|+... ...++..
T Consensus 131 ~d~~~~~~~i~~------~T~lv~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~----~~~d~~~---- 193 (391)
T d1p3wa_ 131 IDLKELEAAMRD------DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGK----LPIDLSQ---- 193 (391)
T ss_dssp CCHHHHHHHCCT------TEEEEECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTT----BCCCTTT----
T ss_pred EcHHHHHHhCCC------CcEEEEEECCCCCCeeECC---HHHHHHHhccCCcEEEEeeccccCC----ccccchh----
Confidence 899999999986 8999999999999999999 8899999999999999999987532 2233322
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh---------cccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT---------RFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.+.++++.|.+|++|.+| .|+++. +++......... ..++.+.....++...+.. ..+...
T Consensus 194 ----~~~D~~~~s~~k~~g~~g--~g~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 263 (391)
T d1p3wa_ 194 ----LKVDLMSFSGHKIYGPKG--IGALYV-RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMA 263 (391)
T ss_dssp ----SCCSEEEEESTTTTSCSS--CEEEEE-CBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHH---HHHHHH
T ss_pred ----ccccccccccccccCCCc--eEEEEE-ecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhH---HHHHhh
Confidence 455678889999988676 466666 333222221111 1122333334443333322 223344
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccc---CC-CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC--
Q 019899 230 TNKRRIKKLYDSFVAGLKQLGIRCS---ES-SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE-- 303 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~g~~~~---~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~-- 303 (334)
...+++++...++.+.|.+.+.... .+ .....+.+.++.. ...++... + .++.++.|..|....
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-l--~~i~v~~G~~c~~~~~~ 333 (391)
T d1p3wa_ 264 TEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMA-L--KDLAVSSGSACTSASLE 333 (391)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS-------CHHHHHHH-T--TTEECBCCCC------C
T ss_pred HHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC-------ChHHHHHH-h--CCCEEEccccccCCccc
Confidence 5556777778888888877643221 11 1223333444543 22455554 3 467777676553211
Q ss_pred ---------------CCeEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 304 ---------------PGWFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 304 ---------------~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
.+++|+|++. .|++|++++++.|+++++++|
T Consensus 334 ~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr 380 (391)
T d1p3wa_ 334 PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLR 380 (391)
T ss_dssp CCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2469999985 589999999999999998763
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.94 E-value=6.8e-25 Score=192.72 Aligned_cols=291 Identities=13% Similarity=0.053 Sum_probs=211.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+.+.++++++ .+..++.+++..++..++.++ .+++|.|+.+...|.+....++ +.+.+++.++ +.|++
T Consensus 95 LE~~lA~~~g--~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~-ls~a~~~~f~-------Hnd~~ 164 (396)
T d2bwna1 95 LEAEIAGLHQ--KEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIK-RNAGPKRIFR-------HNDVA 164 (396)
T ss_dssp HHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHH-HSCCCEEEEC-------TTCHH
T ss_pred HHHHHHHHhC--CCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhh-ccccCceEee-------cchHH
Confidence 3444444443 578999999999999999988 4688999999999999999998 8899998887 34788
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCC--cchhhhhhhccc
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEE--FVSMAEILEAEE 160 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~--~~~~~~~~~~~~ 160 (334)
++++.++... ..+.++|++....+++|.+.| +++|.++|++|++++++||+|+..+++..+ ......+.
T Consensus 165 ~l~~l~~~~~--~~~~~~iv~egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~---- 235 (396)
T d2bwna1 165 HLRELIAADD--PAAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLM---- 235 (396)
T ss_dssp HHHHHHHHSC--TTSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCG----
T ss_pred HhhhHHhhhc--ccCceeEEEEeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCc----
Confidence 8887776432 224556666666889999999 999999999999999999999998886433 22222222
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCC--ChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSI--SAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
...+++++||+|++|..| |++.+ ++++++.++..... |+. ++....++...+.-.. .+...+.+..++
T Consensus 236 --~~~di~~gTlsKa~g~~G---g~v~~-~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~--~~~~~~~r~~l~ 307 (396)
T d2bwna1 236 --HRIDIFNGTLAKAYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQ 307 (396)
T ss_dssp --GGCSEEEEESSSTTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHH
T ss_pred --eeeeeeeecccccccccc---cccch-hHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhh--cchHHHHHHHHH
Confidence 345688999999999777 88887 99999999876443 332 3333333333322111 122255677888
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-CCCCeEEEEecC-C
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC-IEPGWFRCCFTS-L 314 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~~iRi~~~~-~ 314 (334)
.+.+++.+.+.+.|+.+...+... +.+.+.. .....++.++|++++||.+.+..+... .....+|++++. .
T Consensus 308 ~~~~~~~~~l~~~g~~~~~~~spI-vpv~ig~------~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~h 380 (396)
T d2bwna1 308 MHAKVLKMRLKALGMPIIDHGSHI-VPVVIGD------PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVH 380 (396)
T ss_dssp HHHHHHHHHHHHHTCCBCCCSSSC-EEEECCC------HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTS
T ss_pred HHHHHHHHHHHhcCCCcCCCCCCE-EEEEeCC------HHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccC
Confidence 899999999999999876554443 2233332 234467888889889999877554332 234689999986 6
Q ss_pred CcccHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKV 329 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~ 329 (334)
|++||+++++.|+++
T Consensus 381 t~edId~l~~~L~~i 395 (396)
T d2bwna1 381 DLKQIDGLVHAMDLL 395 (396)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.3e-25 Score=198.85 Aligned_cols=291 Identities=16% Similarity=0.185 Sum_probs=210.7
Q ss_pred hhhhcCCCCCC-CCcEEEecCcHHHHHHHHHHh----cCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCc
Q 019899 6 SQVLGQAVSFD-PSQIVLTAGATPAVEILCFCL----ADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNF 77 (334)
Q Consensus 6 ~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~l----~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~ 77 (334)
++.+++.+++. +++|++++|+|++++.++.++ ..+||.|++.+..|++....++. ..|++++.+|++ .+.
T Consensus 72 R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~--~~g 149 (405)
T d1jf9a_ 72 RKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDG 149 (405)
T ss_dssp HHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTS
T ss_pred HHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCC--CCC
Confidence 44555666644 579999999999999887762 57899999999999998776651 468999999985 345
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
.+|++.+++++++ +++++.+++.+|.||.++| +++|+++|+++|+++++|.+++. |....++..
T Consensus 150 ~~~~~~~~~~i~~------~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~----g~~~id~~~--- 213 (405)
T d1jf9a_ 150 TLQLETLPTLFDE------KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAV----MHHPVDVQA--- 213 (405)
T ss_dssp CBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHH---
T ss_pred cCCHHHHHHhccC------CcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceec----cccccchhh---
Confidence 7899999998886 8999999999999999999 99999999999999999999875 333344443
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh------------------------cccCCChHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT------------------------RFCSISAPTQRL 213 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 213 (334)
.+.++++.|++|++|.+| +|+++. ++++.+.+.... ..++.+.....+
T Consensus 214 -----~~~D~~~~s~hK~~Gp~G--~g~l~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~ 285 (405)
T d1jf9a_ 214 -----LDCDFYVFSGHKLYGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIG 285 (405)
T ss_dssp -----HTCSEEEEEGGGTTSCSS--CEEEEE-CHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHH
T ss_pred -----cCCceeeccccccccCCC--ceeeee-chhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHH
Confidence 356788999999988666 688887 676655432110 112445555566
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCC--CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcC
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIR-CSES--SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAK 290 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 290 (334)
+..+++... +...+...++.....+++.+.++..+.. ...+ ..+. +.+.+++. ++.++... ++++|
T Consensus 286 l~~al~~~~--~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~i-vsf~~~~~-------~~~~~~~~-L~~~g 354 (405)
T d1jf9a_ 286 LGAALEYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGV-IAFNLGKH-------HAYDVGSF-LDNYG 354 (405)
T ss_dssp HHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSE-EEEEETTC-------CHHHHHHH-HHHTT
T ss_pred HHHHHHHHH--HhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcE-EEEEcCCC-------CHHHHHHH-HHHCC
Confidence 655554211 1123555566666677778888776443 2222 2343 34566643 23455565 67799
Q ss_pred eEEcCCCCcCC------CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 291 INVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 291 i~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
|.++.|+.|.. ..++++|+|++. .|++|++++++.|+++.+-+
T Consensus 355 I~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 355 IAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp EECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99998887632 235789999996 58999999999999988743
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=5.6e-25 Score=195.14 Aligned_cols=285 Identities=15% Similarity=0.092 Sum_probs=211.2
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
.+.++++++++.++..++.++.+++|.|+++..+|.++...+. ..+.++..++ ..|++++++.++..+.++.
T Consensus 105 ~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~-~~~a~~~~~~-------~~d~~~le~~~~~~~~~~~ 176 (401)
T d1fc4a_ 105 MEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVR-LCKAKRYRYA-------NNDMQELEARLKEAREAGA 176 (401)
T ss_dssp CSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-TSCSEEEEEC-------TTCHHHHHHHHHHHHHTTC
T ss_pred CCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHcccc-ccCceEEEEc-------CCChHHHHHHHHHhhhccc
Confidence 6789999999999999999999999999999999999999888 8888888877 3578888888877766655
Q ss_pred ceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCc--chhhhhhhccccCCCcEEEEecccc
Q 019899 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEF--VSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
...+|++....+..|.+.+ ++++.++|++||+++|+||+|+.+.++..+. ....... .+.+++++|++|
T Consensus 177 ~~~liv~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~------~~~dii~~tl~K 247 (401)
T d1fc4a_ 177 RHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM------GRVDIITGTLGK 247 (401)
T ss_dssp SSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCT------TCCSEEEEESSS
T ss_pred CceEEEEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCC------CCCeEEEeeccc
Confidence 6665666655778899999 9999999999999999999999988764332 2222222 456688999999
Q ss_pred cCCCCCceEEEEeecCHHHHHHHHHhhcc--c--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 019899 175 DLSLPGFRTGVIYSYNESVLAAAKKLTRF--C--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG 250 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 250 (334)
.+| |...|++.+ ++++++.++..... + ..++....++...++. .....+++++++++.+++.+.+.+.+
T Consensus 248 a~g--g~~Gg~v~g-~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~----~~~~~~~~~~l~~~~~~~~~~l~~~g 320 (401)
T d1fc4a_ 248 ALG--GASGGYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMSAAG 320 (401)
T ss_dssp TTC--SSSCEEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccc--cCCcccccC-CHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcc----cccCHHHHHHHHHHHHHHHhhhcccC
Confidence 994 333488887 89999988765332 2 2344444444333322 11225678889999999999999998
Q ss_pred CcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-CCCCeEEEEecC-CCcccHHHHHHHHHH
Q 019899 251 IRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC-IEPGWFRCCFTS-LTHEDIPLVIERIQK 328 (334)
Q Consensus 251 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~~iRi~~~~-~~~~~l~~~l~~l~~ 328 (334)
+.....+.+.. .+.+.. .....++.+.|++ +||.+.+-.+... .....+|++++. .|++|++++++.|++
T Consensus 321 ~~~~~~~~pIv-~v~~~~------~~~a~~~~~~L~~-~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~e 392 (401)
T d1fc4a_ 321 FTLAGADHAII-PVMLGD------AVVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTR 392 (401)
T ss_dssp CCBCCSSSSEE-EEEEEC------HHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CccCCCCCCEE-EEEECC------HHHHHHHHHHHHH-CCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 88766655543 233322 1234578888555 8999876443222 234569999985 699999999999999
Q ss_pred HHHHc
Q 019899 329 VAETC 333 (334)
Q Consensus 329 ~~~~~ 333 (334)
+.+++
T Consensus 393 v~~~l 397 (401)
T d1fc4a_ 393 IGKQL 397 (401)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99876
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.1e-24 Score=192.32 Aligned_cols=279 Identities=14% Similarity=0.153 Sum_probs=204.9
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
.+..+++++++.++..++.++..++|.|+++...|.+.....+ ..+.+++.++ +.|++++++.++.. ..
T Consensus 98 ~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~-~~~~~~~~~~-------hnd~~~le~~l~~~---~~ 166 (383)
T d1bs0a_ 98 YSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS-LSPSQLRRFA-------HNDVTHLARLLASP---CP 166 (383)
T ss_dssp CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-TSSSEEEEEC-------TTCHHHHHHHHHSC---CS
T ss_pred CCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccc-cCCCcceEec-------chHHHHHHHHhccc---CC
Confidence 6789999999999999999999999999999999999999998 8888998888 35889999988642 23
Q ss_pred ceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccC
Q 019899 97 KVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDL 176 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~ 176 (334)
+.++|++..+.+++|.+.| +++|.++|++||+++++||+|+.++++.... ...+... ....+.+.+++|.+
T Consensus 167 ~~~~vv~e~v~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~-G~~~~~~-----~~~~~~~~t~~ka~ 237 (383)
T d1bs0a_ 167 GQQMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR-GSCWLQK-----VKPELLVVTFGKGF 237 (383)
T ss_dssp SCEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGC-CHHHHTT-----CCCSEEEEESSSTT
T ss_pred CceEEEecCCCCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCccc-chHHHcC-----Cccccccccccccc
Confidence 4566777777999999999 8888999999999999999999988754322 2222222 34445678999999
Q ss_pred CCCCceEEEEeecCHHHHHHHHHhhcc--c--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 019899 177 SLPGFRTGVIYSYNESVLAAAKKLTRF--C--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIR 252 (334)
Q Consensus 177 ~~~g~r~g~i~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 252 (334)
|..| |++.+ +.++++.++..... + ..++....++...+.... ......++.++.++..++.+.|.+.|+.
T Consensus 238 g~~G---g~v~~-~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~--~~~~~~~~~~l~~~~~~~~~~l~~~g~~ 311 (383)
T d1bs0a_ 238 GVSG---AAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR--SDEGDARREKLAALITRFRAGVQDLPFT 311 (383)
T ss_dssp SSCC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred cccc---ccccc-chhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 8776 88887 88888888765433 2 233333333333332211 1223567778889999999999999988
Q ss_pred ccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC-CCCCeEEEEecC-CCcccHHHHHHHHHHH
Q 019899 253 CSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC-IEPGWFRCCFTS-LTHEDIPLVIERIQKV 329 (334)
Q Consensus 253 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~~iRi~~~~-~~~~~l~~~l~~l~~~ 329 (334)
+.....++. .+.++. ...+.++.+.|++ +||.+.+..+... .....+|++++. .|++|++++++.|..+
T Consensus 312 ~~~~~s~Ii-~v~~g~------~~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 312 LADSCSAIQ-PLIVGD------NSRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp ECSCCSSBC-CEEEES------HHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCEE-EEEECC------HHHHHHHHHHHHH-CCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 765554432 222222 2344577788555 8999987554322 234579999986 6999999999998764
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.93 E-value=6.7e-24 Score=189.41 Aligned_cols=293 Identities=16% Similarity=0.190 Sum_probs=213.0
Q ss_pred hhhhhcCCCCCCC-CcEEEecCcHHHHHHHHHH----hcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCC
Q 019899 5 MSQVLGQAVSFDP-SQIVLTAGATPAVEILCFC----LADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDN 76 (334)
Q Consensus 5 ~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~~----l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~ 76 (334)
.++.+++.+++++ +.+++++++++++++++.. -.++||+|++.+-.|++....++ ...|.++..+|.. ..
T Consensus 71 aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~--~~ 148 (408)
T d1t3ia_ 71 VRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQ 148 (408)
T ss_dssp HHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TT
T ss_pred HHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecc--cc
Confidence 4566667788874 6799999999999988766 25789999999999998776654 1368999999874 44
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
...+.+.+++++++ ++++|.+++.+|.||...| +++|.++|+++|+++++|.+++. |....++..
T Consensus 149 ~~~~~~~l~~~~~~------~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~----g~~~id~~~-- 213 (408)
T d1t3ia_ 149 ESFDLEHFKTLLSE------KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSA----PHYPLDVQL-- 213 (408)
T ss_dssp SSBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHH--
T ss_pred ccccHHHhhhccCC------CceEEEEecccccccccCc---HHHHhhhhhccCceeeeccceec----ccccccccc--
Confidence 46789999998876 8999999999999999999 88999999999999999999876 434445543
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-----------------------cccCCChHHHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-----------------------RFCSISAPTQRL 213 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 213 (334)
.+.++++.|.+|++|.+| +|+++. +++......... ..++.+.+...+
T Consensus 214 ------~~~D~~~~s~hK~~gp~G--~g~l~v-~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~ 284 (408)
T d1t3ia_ 214 ------IDCDWLVASGHKMCAPTG--IGFLYG-KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIA 284 (408)
T ss_dssp ------HTCSEEEEEGGGTTSCTT--CEEEEE-CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHH
T ss_pred ------cCCceEEeccccccCCCC--cccccc-chhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHH
Confidence 356788999999877555 688888 677655432110 123445555565
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-----CceeEEeeecCCcCCCCChhhHHHHHHHHHH
Q 019899 214 LISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES-----SAGLYCWADMSGLIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (334)
+..+++... +...++..++..+..+++.+.+++. ++.+..+ ..+..+.+.++.. ++.++... |+
T Consensus 285 l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~-------~~~~v~~~-L~ 354 (408)
T d1t3ia_ 285 LGAAVDYLT--DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL-------HASDVATM-VD 354 (408)
T ss_dssp HHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB-------CHHHHHHH-HH
T ss_pred HHHHHHHHH--HcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCC-------CHHHHHHH-Hh
Confidence 665553211 1124556667777788888888876 4444322 1222344555543 33566666 67
Q ss_pred hcCeEEcCCCCcCC------CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 288 IAKINVTPGSACHC------IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 288 ~~gi~v~~g~~~~~------~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
++||.++.|+.|.. ..++.+|||++. .|++|++++++.|+++++..
T Consensus 355 ~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 355 QDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp TTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 79999998887642 235789999996 59999999999999998753
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.3e-23 Score=186.57 Aligned_cols=290 Identities=14% Similarity=0.128 Sum_probs=203.8
Q ss_pred CCCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh-hccCcEEEEEeCCCCCCccccHHHHHHHH
Q 019899 11 QAVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR-FRTGVELIPVHCRSTDNFAFSITALDQAF 88 (334)
Q Consensus 11 ~~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-~~~g~~v~~v~~~~~~~~~~~~~~l~~~l 88 (334)
+.++.+.+ .|+++.|+|++++.++..++.+|+++++....+++...... ...+..+..+.. +.+..++.+++++.+
T Consensus 63 ~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 140 (388)
T d1h0ca_ 63 YVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTK--DPGGHYTLQEVEEGL 140 (388)
T ss_dssp HHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBC--CTTCCCCHHHHHHHH
T ss_pred HHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeecccccccccccccccc--CCccccchHHHHHHh
Confidence 33445544 58888899999999999999999999999888776554432 134555555554 456678999999888
Q ss_pred HHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEE
Q 019899 89 NQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHI 168 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (334)
.+. +++++.+++.+|.||.+.| +++|.++|+++|+++++|.+++. +....++.. .+.+++
T Consensus 141 ~~~-----~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~----g~~~~d~~~--------~~~D~~ 200 (388)
T d1h0ca_ 141 AQH-----KPVLLFLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASL----GGTPLYMDR--------QGIDIL 200 (388)
T ss_dssp HHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTT----TTSCCCTTT--------TTCSEE
T ss_pred ccC-----CcceEEEeeeeeccccccC---HHHHHHHhhcccccceecccccc----ccccccccc--------ccccee
Confidence 775 8899999999999999999 99999999999999999999875 222223221 566788
Q ss_pred EecccccCCCCCceEEEEeecCHHHHHHHHHhhc-------------------------ccCCChHHHHHHHHhhCChHH
Q 019899 169 IYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR-------------------------FCSISAPTQRLLISMLSDTKF 223 (334)
Q Consensus 169 ~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~~ 223 (334)
+.|.+|+++.++ ..|+++. ++..++.+..... ..+.+.....++...+...
T Consensus 201 ~~s~~K~~~gp~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~-- 276 (388)
T d1h0ca_ 201 YSGSQKALNAPP-GTSLISF-SDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALI-- 276 (388)
T ss_dssp EEESSSTTCCCT-TCEEEEE-CHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHH--
T ss_pred cccccccccCCC-ceEEEee-cHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHH--
Confidence 899999996343 4677777 6766665532110 0122333333333333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc----eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSA----GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC 299 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~ 299 (334)
.+..++...++..+..+++++.++..|+....++. ...+.+.+|+.. ++.++...|++++||.+..|..+
T Consensus 277 ~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~------~~~~~~~~L~~~~gI~v~~G~~~ 350 (388)
T d1h0ca_ 277 AEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGY------DWRDIVSYVIDHFDIEIMGGLGP 350 (388)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCEECEECCGG
T ss_pred HHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCC------CHHHHHHHHHhcCCEEEeCCchh
Confidence 12224666777778888888888888766543221 223456777543 34688899888889999888653
Q ss_pred CCCCCCeEEEE-ecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 300 HCIEPGWFRCC-FTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 300 ~~~~~~~iRi~-~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
..++.+||| ++. .+.+|+++++++|++++++++
T Consensus 351 --~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~ 385 (388)
T d1h0ca_ 351 --STGKVLRIGLLGCNATRENVDRVTEALRAALQHCP 385 (388)
T ss_dssp --GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSC
T ss_pred --hcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 346789999 664 688999999999999999864
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=9.7e-24 Score=186.57 Aligned_cols=287 Identities=16% Similarity=0.175 Sum_probs=189.4
Q ss_pred hhhhcCCCCCCCCcEEEecCcHHHHHHHHHH----hcCCCCeEEecCCCCCChhhhhh--hccCcEEEEEeCCCCCCccc
Q 019899 6 SQVLGQAVSFDPSQIVLTAGATPAVEILCFC----LADHGNALLVPSPYYPGFDRDIR--FRTGVELIPVHCRSTDNFAF 79 (334)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~----l~~~gd~vl~~~p~~~~~~~~~~--~~~g~~v~~v~~~~~~~~~~ 79 (334)
++++++.+++++++|++++|+|+++..++.+ ...+|+.|+++...|+.+...++ ...|.+++.+|++ .++.+
T Consensus 50 R~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~--~~~~i 127 (376)
T d1eg5a_ 50 REKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVV 127 (376)
T ss_dssp HHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCB
T ss_pred HHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCC--CCCeE
Confidence 5566777889999999999999999998764 35778888888888877666554 1459999999984 44579
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHH--HhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFA--REKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~--~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
|++++++++++ +++++++++++|+||...+ ++++.+++ +..++++++|.+++. |.....+..
T Consensus 128 d~~~l~~~i~~------~t~lv~is~v~~~tG~~~~---~~~i~~~~~~~~~~~~~~vD~~q~~----g~~~~d~~~--- 191 (376)
T d1eg5a_ 128 KLEELEKLVDE------DTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQTI----GKIPFSLEK--- 191 (376)
T ss_dssp CHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTTT----TTSCCCCTT---
T ss_pred CHHHHHHhcCC------CceEEEEECCccccceeee---ehhhhhhhhhcccCceeEEEeeecc----ccccccccc---
Confidence 99999999987 8999999999999999999 55565555 445999999999875 222233322
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc---------ccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR---------FCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
.+.++++.|++|++|.+|.++.|+-- +.. ++.... .+..+............. .....
T Consensus 192 -----~~~D~~~~s~~K~~gp~G~~~l~~~~-~~~----~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 258 (376)
T d1eg5a_ 192 -----LEVDYASFSAHKFHGPKGVGITYIRK-GVP----IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI---AVEEL 258 (376)
T ss_dssp -----TCCSEEEEEGGGGTSCTTCEEEEECT-TSC----CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH---HHHTH
T ss_pred -----cCccceecccceeecCCCceeEEecc-Ccc----cCCcccCCCCcccccCCcccchhhhhHHHHhhc---cccch
Confidence 56678999999999888876666532 211 111110 112233333333333221 12223
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCc---eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCC--
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLGIRCSESSA---GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIE-- 303 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~-- 303 (334)
............++.+.|...+.....+.. .....+.++.. ++..+... ++++||.+++|..|....
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-L~~~gI~vr~G~~c~~~~~~ 330 (376)
T d1eg5a_ 259 SEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNL-LSGYGIYVSTSSACTSKDER 330 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHH-HHHTTEECBC----------
T ss_pred hhhhhhhhhhhhhhccccccccccccccccccccceeeeccCCC-------CHHHHHHH-HhhCCeEEeCcchhcCCccc
Confidence 344555666677777887766433322211 11222344432 23455554 778999999887664321
Q ss_pred ---------------CCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 304 ---------------PGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 304 ---------------~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
++++|+|++. .|++|++++++.|+++++
T Consensus 331 ~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 331 LRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp --CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 1369999986 589999999999999986
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=1.5e-21 Score=176.24 Aligned_cols=298 Identities=13% Similarity=0.129 Sum_probs=187.5
Q ss_pred CcEEEecCcHH-HHHHHHHHh---cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC-CCCCccccHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATP-AVEILCFCL---ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR-STDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 18 ~~i~~~~g~~~-~~~~~~~~l---~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~~~~~~l~~~l~~~~ 92 (334)
...++++|+++ ++.+++.++ ..+++.|+++...|+++..++. .+|.+++.|+.. .++.+.+|+++|+++|++..
T Consensus 113 ~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~-~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~ 191 (445)
T d3bc8a1 113 ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV-TAGFEPVVIENVLEGDELRTDLKAVEAKIQELG 191 (445)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-HTTCEEEEECCEEETTEEECCHHHHHHHHHHHC
T ss_pred cCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHH-HcCCeeEEEEeeccCcccccCHHHHHHHHHhcc
Confidence 35666777664 444444443 4567899999999999999999 999998888642 34667899999999998752
Q ss_pred HcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 93 KRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 93 ~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
.. ++.+|+++.|+|++|.+.| +++|.++|++||+++++|++|+.+.... ........ .. .+.+++..|.
T Consensus 192 ~~--~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~---~~~~~~~~--~~-~~vd~~~~s~ 260 (445)
T d3bc8a1 192 PE--HILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKC---MHLIQQGA--RV-GRIDAFVQSL 260 (445)
T ss_dssp GG--GEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH---HHHHHHHH--HH-SCCCEEEEEH
T ss_pred cc--CeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhc---cccchhcc--Cc-CCcceEEecC
Confidence 22 5788999999999999999 9999999999999999999997533110 01111111 00 3445778899
Q ss_pred cccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 019899 173 SKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ---- 248 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---- 248 (334)
+|.++ .+...|+++.++....+.+.................+.+.... ........+...++.+++.+.|++
T Consensus 261 hK~~~-~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 336 (445)
T d3bc8a1 261 DKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG---CSGYRKLLKERKEMFVYLSTQLKKLAEA 336 (445)
T ss_dssp HHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-cCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh---hhcchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99886 3345677877788888777654433333333333332222111 222234444455555566666554
Q ss_pred CCCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc----CCCC----------cCCC----CCCeEEE
Q 019899 249 LGIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT----PGSA----------CHCI----EPGWFRC 309 (334)
Q Consensus 249 ~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~----------~~~~----~~~~iRi 309 (334)
.+..+.. +......++.+.... .....+..++... +.+.||... ++.. ++.. ...++|+
T Consensus 337 ~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~l~~~-L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i 414 (445)
T d3bc8a1 337 HNERLLQTPHNPISLAMTLKTID-GHHDKAVTQLGSM-LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNA 414 (445)
T ss_dssp TTCCBCCCTTCSSEEEEECTTTS-SSSSCHHHHHHHH-HHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEE
T ss_pred cCceeecCCCCCcceEEEeeecc-ccCCCCHHHHHHH-HHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEE
Confidence 3555432 333333333333221 1122344456666 555777321 1111 1111 1256899
Q ss_pred EecC-CCcccHHHHHHHHHHHHHHc
Q 019899 310 CFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 310 ~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+++. .|++|++.+++.|.+++++.
T Consensus 415 ~~~~~~T~eDID~~v~~L~kilk~~ 439 (445)
T d3bc8a1 415 AAAIGMKMQDVDLFIKRLDKCLNIV 439 (445)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8874 68999999999999999875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.2e-23 Score=181.13 Aligned_cols=297 Identities=13% Similarity=0.091 Sum_probs=188.0
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh--ccCcEEEEEeCCCCCCccccHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF--RTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~--~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+++.+++.++ .+++++++|+|+|+.+++.++.++||.++++.+.|.++...... ..+..+..++. .....+++
T Consensus 39 le~~lA~~~G--~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 113 (343)
T d1m6sa_ 39 LERLAAETFG--KEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG---KNGAMDPD 113 (343)
T ss_dssp HHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECE---ETTEECHH
T ss_pred HHHHHHHHHC--CCeEEEeCCHHHHHHHHHHHHhccCCceeccccccceeeecccccccccceeecccc---ccCccCHH
Confidence 3444444444 46789999999999999999999999999999988765543331 23455555553 44567999
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 83 ALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
.+++.+.....+..++..+++... ++++|.+.+.+++++|+++|+++|+++++|+++..+..+...... .....
T Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~-~~~~~---- 188 (343)
T d1m6sa_ 114 DVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPV-KEYAG---- 188 (343)
T ss_dssp HHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCH-HHHHH----
T ss_pred HHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccch-hhhcc----
Confidence 999888765444445665555544 789999999999999999999999999999998865432211111 11111
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLY 239 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (334)
... ..+.+.+|.. .|...++++. ..+........... ++.+.....++...... ... ........++.
T Consensus 189 -~~~-~~~~~~~~~~--~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~-~~~~~~~~~~~ 258 (343)
T d1m6sa_ 189 -YAD-SVMFCLSKGL--CAPVGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIAL----TKM-VDRLKEDHENA 258 (343)
T ss_dssp -TCS-EEEEESSSTT--CCSSCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHH----HHS-STTHHHHHHHH
T ss_pred -ccc-cccccccccc--cccccccccc-cHHHHhhhHhhCcccccccchhHHHHHhhhhhh----hhh-HHHHHHHHHHH
Confidence 222 2333333333 4555677777 67766666544332 22222222222222111 110 11122233444
Q ss_pred HHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcc
Q 019899 240 DSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHE 317 (334)
Q Consensus 240 ~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~ 317 (334)
.++.+.+.+. +.....+...+++|++++.... .+.++... |+++||.+.|.. ++++|++++. .|++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~a~~l~~~-L~~~Gi~v~~~~------~~~iRi~~~~~~t~e 326 (343)
T d1m6sa_ 259 RFLALKLKEIGYSVNPEDVKTNMVILRTDNLKV-----NAHGFIEA-LRNSGVLANAVS------DTEIRLVTHKDVSRN 326 (343)
T ss_dssp HHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSS-----CHHHHHHH-HHHHTEECEEEE------TTEEEEECCTTSCHH
T ss_pred HHhhhHHHHhccCccCCCCCceEEEEEeCCCcc-----cHHHHHHH-HHHCCCEEecCC------CCEEEEECCCCCCHH
Confidence 4555555544 3344445556677888775322 34678888 455899987642 5689999885 6999
Q ss_pred cHHHHHHHHHHHHHHc
Q 019899 318 DIPLVIERIQKVAETC 333 (334)
Q Consensus 318 ~l~~~l~~l~~~~~~~ 333 (334)
|+++++++|+++++++
T Consensus 327 did~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 327 DIEEALNIFEKLFRKF 342 (343)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999885
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.88 E-value=4.2e-21 Score=172.66 Aligned_cols=292 Identities=12% Similarity=0.100 Sum_probs=193.1
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC-CCCCccccHHHHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR-STDNFAFSITALDQAFN 89 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~~~~~~l~~~l~ 89 (334)
++.+.....+..|+++++.+++.++. .++++|+++...|+++...+. ..|.+++.++.. .++.+.+|+++|+++|+
T Consensus 126 ~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~-~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~ 204 (434)
T d2z67a1 126 LGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVS-FVGMNMRLVETVLDGDRVYVPVEDIENAIK 204 (434)
T ss_dssp TTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HTTCEEEEECCEEETTEEECCHHHHHHHHH
T ss_pred cCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHH-HhCCcceEEEeecCCCccCCCHHHHHHHHH
Confidence 34445555555666667766766652 378999999999999999998 899998888742 24556899999999998
Q ss_pred HHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEE
Q 019899 90 QARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 90 ~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
+....+ ++.+|++++|++++|.+.| +++|.++|++||+++++|++|+.+... ......... +.+.++++
T Consensus 205 ~~~~~~-~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~---~~~~~~~~~----~~~~D~~~ 273 (434)
T d2z67a1 205 KEIELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY---YLEKLKKAF----KYRVDAVV 273 (434)
T ss_dssp HHHHTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH---HHHHHHHHH----TSCCSEEE
T ss_pred hhhhcC-CceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhh---ccccccccc----cCCcceEE
Confidence 765544 5667999999999999999 999999999999999999999752210 000111111 14667888
Q ss_pred ecccccCCCCCceEEEEeecCHHHHHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 170 YGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 170 ~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
.|++|.++ .+...|++..+++.+++++.+.....+.+.....+.+.+... ..+.+....++..++++++.+.|++.
T Consensus 274 ~s~hK~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~---~~~g~~~~~~~~~~~a~~l~~~L~~l 349 (434)
T d2z67a1 274 SSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSM---GSKNYLELVKNQKNSKKLLDELLNDL 349 (434)
T ss_dssp EEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCccccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHH---HHhcchhHHHHHHHHHHHHHHHHHHh
Confidence 89999886 444567777778888888776544433333333322222211 12333455556666667777777653
Q ss_pred ----CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc----CCCCcC-----CCCCCeEEEEecC-CC
Q 019899 250 ----GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT----PGSACH-----CIEPGWFRCCFTS-LT 315 (334)
Q Consensus 250 ----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~-----~~~~~~iRi~~~~-~~ 315 (334)
+.++........+.+.... +..++... |.+.||... +....+ ....+++|++++. .|
T Consensus 350 ~~~~g~~ll~~~~~~~~~~~~~~--------~~~~l~~~-L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T 420 (434)
T d2z67a1 350 SKKTGGKFLDVESPIASCISVNS--------DPVEIAAK-LYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVR 420 (434)
T ss_dssp HHHSSCCBCCCCCSSEEEEECSS--------CHHHHHHH-HHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCC
T ss_pred hhhcCceecCCCCCceeeeecCC--------CHHHHHHH-HHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCC
Confidence 6666554444333333332 23566676 555788532 222111 1135789999885 69
Q ss_pred cccHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKV 329 (334)
Q Consensus 316 ~~~l~~~l~~l~~~ 329 (334)
++|++++++.|+++
T Consensus 421 ~edID~~i~~L~kI 434 (434)
T d2z67a1 421 TEDIVNSVSKLEKI 434 (434)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.88 E-value=5.8e-21 Score=167.54 Aligned_cols=294 Identities=16% Similarity=0.130 Sum_probs=191.6
Q ss_pred hhhhhhcCCCCCCCCc--EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC-hhhhhhhccCcEEEEEeCCCCCCcccc
Q 019899 4 FMSQVLGQAVSFDPSQ--IVLTAGATPAVEILCFCLADHGNALLVPSPYYPG-FDRDIRFRTGVELIPVHCRSTDNFAFS 80 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~--i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~-~~~~~~~~~g~~v~~v~~~~~~~~~~~ 80 (334)
..++++++.+++++++ +++++|+|.+++.++.++..+++.+++....+.. .........+.....+..........+
T Consensus 37 ~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (361)
T d1m32a_ 37 QIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQ 116 (361)
T ss_dssp HHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHH
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccCCccch
Confidence 3445555566677765 7788889999999999998888877777655433 222222244555555554322222222
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
.+....... .+++++.+++.+|.||...| +++|.++|+++|+++++|.+++. |.....+..
T Consensus 117 ~~~~~~~~~------~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~g~~~~vDa~qs~----G~~~~d~~~------ 177 (361)
T d1m32a_ 117 AIDAILNAD------PTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSF----GGIPMDIAA------ 177 (361)
T ss_dssp HHHHHHHHC------TTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCTTT------
T ss_pred hhHHHHHhc------cCccceEEEeeecccccchh---hhhhhhhhcccceeeEeeccccc----Ccccccccc------
Confidence 233333232 38999999999999999999 99999999999999999999876 222333322
Q ss_pred cCCCcEEEEecccccCC-CCCceEEEEeecCHHHHHHHHHh--------------------hcccCCChHHHHHHHHhhC
Q 019899 161 VDKDRVHIIYGLSKDLS-LPGFRTGVIYSYNESVLAAAKKL--------------------TRFCSISAPTQRLLISMLS 219 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~-~~g~r~g~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~ 219 (334)
.+.++++.|.+|+++ .+| +|+++. +++..+..+.. ...++.+.....++...+.
T Consensus 178 --~~~D~~~~s~~K~l~gp~G--~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~ 252 (361)
T d1m32a_ 178 --LHIDYLISSANKCIQGVPG--FAFVIA-REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALK 252 (361)
T ss_dssp --TTCSEEEEESSSTTCCCSS--EEEEEE-EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH
T ss_pred --cccceEEeeecccccCCCC--ceEEEe-chhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHH
Confidence 577889999999994 345 788887 55443322111 1123445555555555543
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
... .+........+.....+.+.+.++..|+....++ .+..+.+.+|+.... +..++.+. +.++||.+.+|
T Consensus 253 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~----~~~~~~~~-l~~~gi~i~~G 326 (361)
T d1m32a_ 253 ELA-KEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQY----RFSEFYRR-LKEQGFVIYPG 326 (361)
T ss_dssp HHH-HHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTC----CHHHHHHH-HHHTTEECEEC
T ss_pred HHH-HhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCC----CHHHHHHH-HHHCCcEEECC
Confidence 221 1222345556677777888888888887665432 233445666654321 34577777 56689999887
Q ss_pred CCcCCCCCCeEEEEec-CCCcccHHHHHHHHHHHH
Q 019899 297 SACHCIEPGWFRCCFT-SLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~-~~~~~~l~~~l~~l~~~~ 330 (334)
... .++.+||++. +.+++|+++++++|++++
T Consensus 327 ~~~---~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 327 KVS---QSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp CCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred CcC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 643 4678999964 579999999999999875
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=3.2e-20 Score=161.27 Aligned_cols=266 Identities=18% Similarity=0.202 Sum_probs=187.8
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..++++++..|+..++.+++++||+|+++...|++....++. ..|.++..++. -|.+++++++++
T Consensus 74 ~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~-------~d~~~~~~ai~~--- 143 (392)
T d1gc0a_ 74 GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALEAAMTP--- 143 (392)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-------TCHHHHHHHCCT---
T ss_pred CcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc-------cCHHHHHHhCCC---
Confidence 56789999999999999999999999999999999998776552 36899988874 378999999987
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++.+|.||+..+.| ++.|+++|+++|+++++|..|.. +....++. .+.+++++|.+
T Consensus 144 ---~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~at-------P~~~~Pl~------~GaDivihS~T 204 (392)
T d1gc0a_ 144 ---ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCT-------PYLQRPLE------LGADLVVHSAT 204 (392)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTH-------HHHCCGGG------GTCSEEEEETT
T ss_pred ---CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccC-------ccccChHH------hCCCEEEEecc
Confidence 8999999999999999999 99999999999999999999863 22222222 67889999999
Q ss_pred ccCCCC-CceEEEEeecCHHHHHHHH--Hhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019899 174 KDLSLP-GFRTGVIYSYNESVLAAAK--KLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248 (334)
Q Consensus 174 K~~~~~-g~r~g~i~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (334)
|.++.. ..-.|.+++ +++....++ ..+. ....++.....+..-++.. ..+.++..+++..+.+.|++
T Consensus 205 Kyi~Ghsd~~~G~v~~-~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL-------~lRm~~~~~nA~~lA~~L~~ 276 (392)
T d1gc0a_ 205 KYLSGHGDITAGIVVG-SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL-------NLRMDRHCANAQVLAEFLAR 276 (392)
T ss_dssp TTTTCSSSCCCEEEEE-CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred eeecCCcccccccccc-hhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccH-------HHHHHHHHHHHHHHHHHHHh
Confidence 999533 455666666 676665543 3332 3456777777777777664 33456677788888888887
Q ss_pred CC-Cc---cc---------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe---EEcCCCCcC------
Q 019899 249 LG-IR---CS---------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI---NVTPGSACH------ 300 (334)
Q Consensus 249 ~g-~~---~~---------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~~g~~~~------ 300 (334)
+. ++ +. ...+|+ +.+++... .+-..++++.-.+ ...-|....
T Consensus 277 hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~-~sf~l~~~---------~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa 346 (392)
T d1gc0a_ 277 QPQVELIHYPGLASFPQYTLARQQMSQPGGM-IAFELKGG---------IGAGRRFMNALQLFSRAVSLGDAESLAQHPA 346 (392)
T ss_dssp CTTEEEEEEC----------------CCTTE-EEEEETTH---------HHHHHHHHHHCSSSEECSCCSCSSCEEECGG
T ss_pred CCCccEEeeccccCCcccccccccccCCCcE-EEEEEeCC---------HHHHHHHHHhCCcceEeeccCCcChhhcCcc
Confidence 62 22 11 112333 33455321 2333333443333 222232210
Q ss_pred ----C-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 301 ----C-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 301 ----~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
. ..++.+|+|++ -|+.+++++.|.++++.
T Consensus 347 ~~th~~~~~e~r~~~Gi~~~liRlSVG---lEd~eDLi~Dl~~AL~a 390 (392)
T d1gc0a_ 347 SMTHSSYTPEERAHYGISEGLVRLSVG---LEDIDDLLADVQQALKA 390 (392)
T ss_dssp GTTTSSSCHHHHHHTTCCTTEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHcCCCcCeEEEEee---eCCHHHHHHHHHHHHHh
Confidence 0 13467999999 68888888999888864
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.7e-20 Score=165.81 Aligned_cols=293 Identities=12% Similarity=0.086 Sum_probs=195.5
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc---CCCCeEEecCCCCCChhh--hhhhccCcEEEEEeCCCCCCc
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA---DHGNALLVPSPYYPGFDR--DIRFRTGVELIPVHCRSTDNF 77 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~---~~gd~vl~~~p~~~~~~~--~~~~~~g~~v~~v~~~~~~~~ 77 (334)
+-+++.++...+.+++.|++|+|+|+++++++.++. ++||+|++....+++... .++ ..|..+..+... +.+.
T Consensus 43 ~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 120 (382)
T d2bkwa1 43 KNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLR-SYGAQVDVVRPL-KIGE 120 (382)
T ss_dssp HHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHH-HTTCEEEEECCS-STTS
T ss_pred HHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcc-cccccccccccc-CCCC
Confidence 345566654455677789999999999999999985 679999998877665432 233 567777666532 4555
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CcEEEEeccccccccCCCCcchhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK--NIHVISDEIYGGSIFGNEEFVSMAEI 155 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~~~ 155 (334)
..+.+.+++++.+. +++++++++.+|.||...+ +..+.+.|+++ ++++++|.+++. |..+.++..
T Consensus 121 ~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~---~~~~~~~~~~~~~~~~~~vDa~qs~----g~~pid~~~- 187 (382)
T d2bkwa1 121 SVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSI----GCEEFEFDE- 187 (382)
T ss_dssp CCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTT----TTSCCCTTT-
T ss_pred ccchhHHHHHhhhc-----cchheeeeecccccccccc---chhhhhhccccccceeeeeeccccc----ccccccccc-
Confidence 78889999888763 7899999999999999999 66666666554 699999999875 333333332
Q ss_pred hhccccCCCcEEEEecccccC-CCCCceEEEEeecCHHHHHHHHHh----------------------------hcccCC
Q 019899 156 LEAEEVDKDRVHIIYGLSKDL-SLPGFRTGVIYSYNESVLAAAKKL----------------------------TRFCSI 206 (334)
Q Consensus 156 ~~~~~~~~~~~~~~~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~~----------------------------~~~~~~ 206 (334)
++.++++.|.+|++ |.+| +|+++. +++.++.+... ...+++
T Consensus 188 -------~giD~~~~s~~K~l~gP~G--~g~l~v-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp 257 (382)
T d2bkwa1 188 -------WGVDFALTASQKAIGAPAG--LSISLC-SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATP 257 (382)
T ss_dssp -------TTCSEEEEESSSTTCCCSC--EEEEEE-CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCC
T ss_pred -------cCeeEEeecccccCcCCCc--hhhhhc-cHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCC
Confidence 57788999999999 5555 799988 77766554211 012345
Q ss_pred ChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC---CC--ceeEEeeecCCcCCCCChhhHHH
Q 019899 207 SAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE---SS--AGLYCWADMSGLIPSYSEKGELE 280 (334)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~---~~--~g~~~~~~~~~~~~~~~~~~~~~ 280 (334)
+....+++..+++.. .++......++.++.++++.+.+.+. ++.... .. ...++.+..|. +.+
T Consensus 258 ~~~~i~al~~aL~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~---------~~~ 326 (382)
T d2bkwa1 258 PVQLINSLDVALKEI--LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---------PPD 326 (382)
T ss_dssp CHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC---------HHH
T ss_pred cHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC---------HHH
Confidence 555666666666432 13334556666777788888888664 333221 11 11223345553 246
Q ss_pred HHHHHHHhcCeEEcCCCCcCCCCCCeEEEE-ecC-CCcccHHHHHHHHHHHHHHc
Q 019899 281 LWDKLLNIAKINVTPGSACHCIEPGWFRCC-FTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 281 ~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~-~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+... |+++||.+.+|.... ..+..+||+ ++. .++++++.+++.|..+.+.+
T Consensus 327 ~~~~-L~~~gi~i~~G~~~~-~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L 379 (382)
T d2bkwa1 327 VIAF-LKSHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLAL 379 (382)
T ss_dssp HHHH-HHHTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHT
T ss_pred HHHH-HHHCCeEEECCCChh-hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 6665 677999999876432 235689999 664 35677777766666555444
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.87 E-value=3.5e-20 Score=166.49 Aligned_cols=303 Identities=13% Similarity=0.078 Sum_probs=197.7
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCC--------CCCCccccHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCR--------STDNFAFSITALDQAF 88 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~--------~~~~~~~~~~~l~~~l 88 (334)
.+.++++++|+.|+.+++.+++++||.|+.... +......+. ..|..++.+... ....+.+|++.|+++|
T Consensus 90 ~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I 167 (456)
T d1c7ga_ 90 FKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRFHQE-KNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLI 167 (456)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHHHHH-HTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHH
T ss_pred CCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHHHHH-HcCceeeeccccccccccccCCccccCCHHHHHHHh
Confidence 567899999999999999999999999887664 333444455 678777766542 1244578999999999
Q ss_pred HHHHHcCCceeEEEEeCCCCC-cccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-------cCCCCcchhhhhhhccc
Q 019899 89 NQARKRGVKVRGILICNPANP-VGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-------FGNEEFVSMAEILEAEE 160 (334)
Q Consensus 89 ~~~~~~~~~~~~i~~~~p~np-tG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-------~~~~~~~~~~~~~~~~~ 160 (334)
++... .++.++++.+|+|+ .|.+++.+++++|.++|++||+.+++|+++.... ..+....++.....+
T Consensus 168 ~~~~~--~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~-- 243 (456)
T d1c7ga_ 168 KEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHE-- 243 (456)
T ss_dssp HHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHH--
T ss_pred hhcCC--ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccc--
Confidence 87522 25668899999885 5789999999999999999999999999864211 001111222222111
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-------cCCChHHHHHHHHhhCChHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-------CSISAPTQRLLISMLSDTKFIQEYLETNKR 233 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (334)
+-...+++..|++|.++.++ .|+++.+++.+.+.++..... +..+.....+++..+..... . ...+
T Consensus 244 ~~~~ad~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~-~----~~l~ 316 (456)
T d1c7ga_ 244 MFSYADGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-Y----EYIE 316 (456)
T ss_dssp HHTTCSEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-H----HHHH
T ss_pred cccccccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcC-H----HHHH
Confidence 00123355568999997442 488888788888777654211 12333333333332221110 1 1223
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeEEcCCCCc--CCC-------
Q 019899 234 RIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKINVTPGSAC--HCI------- 302 (334)
Q Consensus 234 ~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~--~~~------- 302 (334)
+..++.+++.+.|++.|+.+..+.++...+++...... ......+.++...++.+.||...+...+ +..
T Consensus 317 ~r~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~ 396 (456)
T d1c7ga_ 317 HRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENH 396 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBC
T ss_pred HHHHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCcc
Confidence 33456678899999999999888888877776543211 1112345577778788889975432211 110
Q ss_pred --CCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 303 --EPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 303 --~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
..+.+|++++. .|+++++.+++.|+++.++
T Consensus 397 ~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~ 430 (456)
T d1c7ga_ 397 RPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp CCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred CCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence 12469999873 4999999999999999864
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.87 E-value=1.1e-19 Score=157.93 Aligned_cols=266 Identities=16% Similarity=0.187 Sum_probs=187.1
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..++++++..|+..++.+++++||+|+++...|.+....+.. ..|.++..++. .|.+.+++++++
T Consensus 78 g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~-------~d~~~~~~~i~~--- 147 (397)
T d1y4ia1 78 GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------GKPEEIRAAMRP--- 147 (397)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCCT---
T ss_pred CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCC-------CCHHHHHHhcCC---
Confidence 46789999999999999999999999999999999987776541 46999998884 368999999976
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++.+|.||+..+.| +++++++|+++|+++++|..+.. +....++. .+.+++++|++
T Consensus 148 ---~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~at-------P~~~~Pl~------~GaDivihS~T 208 (397)
T d1y4ia1 148 ---ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMS-------PYCQQPLQ------LGADIVVHSVT 208 (397)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTC-------TTTCCGGG------GTCSEEEEETT
T ss_pred ---CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccC-------cccCcchh------cCCCEEEEehh
Confidence 8999999999999999999 99999999999999999999763 12222221 57789999999
Q ss_pred ccCCCCC-ceEEEEeecCHHHHHHHH--Hhhc--ccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019899 174 KDLSLPG-FRTGVIYSYNESVLAAAK--KLTR--FCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248 (334)
Q Consensus 174 K~~~~~g-~r~g~i~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (334)
|.++..+ .=.|.+++ +++.....+ ..+. ....++...+.+..-++.. .-+.++..+++..+.+.|++
T Consensus 209 Kyi~Ghsdvl~G~v~~-~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL-------~lRm~~~~~nA~~lA~~L~~ 280 (397)
T d1y4ia1 209 KYINGHGDVIGGIIVG-KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL-------GIRMERHCENALKIARFLEG 280 (397)
T ss_dssp TTTTCSSCCCCEEEEE-CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCCcceeeeccCC-CHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcH-------HHHHHHHHHHHHHHHHHHHh
Confidence 9995444 44455665 776655443 3333 2345677777777777664 33445677888888888888
Q ss_pred CC-Cc---cc---------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE---EcCCCCc-------
Q 019899 249 LG-IR---CS---------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN---VTPGSAC------- 299 (334)
Q Consensus 249 ~g-~~---~~---------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~---v~~g~~~------- 299 (334)
+. ++ +. ...+|+ +.+++... .+.+.++++...+. +.-|...
T Consensus 281 hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~-~sf~~~~~---------~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~ 350 (397)
T d1y4ia1 281 HPSITRVYYPGLSSHPQYELGQRQMSLPGGI-ISFEIAGG---------LEAGRRMINSVELCLLAVSLGDTETLIQHPA 350 (397)
T ss_dssp CTTEEEEECTTSTTCTTHHHHHHHCSSCCSE-EEEEETTH---------HHHHHHHHHTCSSSEECSCCSCSSCEEECTT
T ss_pred CCCcCeEeCCCCCCCccccccccccCCCCeE-EEEEecCC---------HHHHHHHHHcCCccceeeccCcccceeeCcc
Confidence 62 22 11 112444 34555432 23334444443332 2112211
Q ss_pred ---CC-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 300 ---HC-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ---~~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
+. ..++.+|+|++ -|+.+++++.|.+++++
T Consensus 351 ~~th~~~~~e~r~~~Gi~~~liRlsvG---lEd~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 351 SMTHSPVAPEERLKAGITDGLIRLSVG---LEDPEDIINDLEHAIRK 394 (397)
T ss_dssp TTTTSSSCHHHHHHTTCCTTEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHcCCCcCEEEEEec---cCCHHHHHHHHHHHHHH
Confidence 00 13467999999 78888899999998875
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.5e-19 Score=155.42 Aligned_cols=269 Identities=16% Similarity=0.155 Sum_probs=187.9
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..++++++.+|+..++.+++++||.|+++...|.+....+.. ..|.++..++. .|.+++++++++
T Consensus 65 g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~-------~d~~~~~~~~~~--- 134 (384)
T d1cs1a_ 65 GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ-------GDEQALRAALAE--- 134 (384)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT-------TCHHHHHHHHHT---
T ss_pred CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccC-------CCHHHHHhhccc---
Confidence 46799999999999999999999999999999999887665442 35777777663 467889998887
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++.+|.||+..+.| +++|+++|+++|+++++|+.+.. +....++. .+.+++++|.+
T Consensus 135 ---~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~at-------P~~~~Pl~------~GaDiVvhS~T 195 (384)
T d1cs1a_ 135 ---KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLS-------PALQNPLA------LGADLVLHSCT 195 (384)
T ss_dssp ---CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTC-------TTTCCGGG------GTCSEEEEETT
T ss_pred ---cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccC-------cccccccc------cCCCEEEEccc
Confidence 8999999999999999999 99999999999999999999853 12222221 57789999999
Q ss_pred ccCCCCC-ceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 019899 174 KDLSLPG-FRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG 250 (334)
Q Consensus 174 K~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 250 (334)
|.++..| .=.|.++.+++.+.+.++..... ...++...+.+..-++.. .-+.++..+++..+.+.|+.+.
T Consensus 196 Kyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL-------~lRm~~~~~nA~~lA~~L~~hp 268 (384)
T d1cs1a_ 196 KYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL-------VPRMELAQRNAQAIVKYLQTQP 268 (384)
T ss_dssp TTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchh-------HHHHHHHHHHHHHHHHhcccCC
Confidence 9995343 45566777677777777654433 345666666666666653 3345567788888888888762
Q ss_pred -Cc---cc----CC----------CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe---EEcCCCCcC---------
Q 019899 251 -IR---CS----ES----------SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI---NVTPGSACH--------- 300 (334)
Q Consensus 251 -~~---~~----~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~~g~~~~--------- 300 (334)
++ +. .| ..|-.+++++... .+-+.++++...+ ...-|....
T Consensus 269 ~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~---------~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~t 339 (384)
T d1cs1a_ 269 LVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMT 339 (384)
T ss_dssp TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTT
T ss_pred ceeeeeeccccchhHHHHHHhhcCCCcceeEEeecch---------HHHHHHHHHhCCcceeccccCCccceeccccccc
Confidence 21 11 01 1233444555432 2333333443332 222122110
Q ss_pred -C-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 301 -C-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 301 -~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
. ..++.+|+|++ .|+.+++++.|.++++..
T Consensus 340 h~~~~~e~r~~~Gi~~~lvRlSvG---lEd~eDLi~Dl~~AL~aa 381 (384)
T d1cs1a_ 340 HAGMAPEARAAAGISETLLRISTG---IEDGEDLIADLENGFRAA 381 (384)
T ss_dssp TTTSCHHHHHHHTCCTTEEEEECC---SSCHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCCCcCeEEEEec---cCCHHHHHHHHHHHHHHh
Confidence 0 12357999999 788888999999888763
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=9.3e-20 Score=158.10 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=151.6
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..+++++|..|+. ++.+++++||+|++..+.|.+....++. ..|.++..++. .+.+++++++++
T Consensus 64 ~~~a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~-------~~~~~~~~ai~~--- 132 (380)
T d1ibja_ 64 ADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-------TKLDEVAAAIGP--- 132 (380)
T ss_dssp CSEEEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-------TSHHHHHHHCCS---
T ss_pred CceEEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc-------chHHHHHHHhcc---
Confidence 467899999999986 5567889999999999999988776652 36888887773 367889988876
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++..|.||+..+.| +++|+++|+++|+++++|+.+.. +....++. .+.+++++|++
T Consensus 133 ---~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~at-------P~~~~Pl~------~GaDiVvhS~T 193 (380)
T d1ibja_ 133 ---QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMS-------PVLSRPLE------LGADIVMHSAT 193 (380)
T ss_dssp ---SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTC-------TTTCCGGG------TTCSEEEEETT
T ss_pred ---CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccc-------cccccccc------cCCCEEEeccc
Confidence 8999999999999999999 99999999999999999999863 12222221 67889999999
Q ss_pred ccCCCCC-ceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 019899 174 KDLSLPG-FRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL 249 (334)
Q Consensus 174 K~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (334)
|.++..+ .=.|.++.+++.+.+.++.....+ ..++.....+.+-++.. ..+.++..+++..+.+.|+++
T Consensus 194 Kyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl-------~lRm~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 194 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM-------ALRIEKQQENARKIAMYLSSH 265 (380)
T ss_dssp TTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred ceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhh-------hhhHHHHHHHHHHHHHHHHhC
Confidence 9995343 445666666677777776654443 45677777777777664 334566777888888888876
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.86 E-value=3.1e-21 Score=171.89 Aligned_cols=288 Identities=11% Similarity=0.038 Sum_probs=186.3
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh------cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCC
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL------ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDN 76 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l------~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~ 76 (334)
+..++.+++.+++++++|++|+++|++++.++... ..+++.|++.+..|++....+. ..+.++..++. ...
T Consensus 73 e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~ 149 (404)
T d1qz9a_ 73 ERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIA-EGLADMLQQGY--TLR 149 (404)
T ss_dssp HHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHH-HHHHHHHCSSC--EEE
T ss_pred HHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHH-hhhheeeeece--ecc
Confidence 35678889999999999999999999998876532 3578888888888776655544 33333333332 122
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhh
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEIL 156 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~ 156 (334)
...+.+.+++++++ ++++|.+++.+|.||..+| +++|+++|+++|+.+++|.+++. |.....+..
T Consensus 150 ~~~~~~~~~~~i~~------~T~lV~i~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~----g~~~~~~~~-- 214 (404)
T d1qz9a_ 150 LVDSPEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA----GAVPVDLHQ-- 214 (404)
T ss_dssp EESSGGGHHHHCST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCHHH--
T ss_pred ccccchhHHHhcCC------CceEEEEecccccccceec---HHHHhccccccccceeEEeeccc----ccccccccc--
Confidence 34577888888876 8999999999999999999 99999999999999999999876 333334433
Q ss_pred hccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh-------------------------cccCCChHHH
Q 019899 157 EAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-------------------------RFCSISAPTQ 211 (334)
Q Consensus 157 ~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~ 211 (334)
.+.++++.|.+|+++.++...|+++. ++...+.+.... ...+.+....
T Consensus 215 ------~~~d~~~~s~~K~~~~~~g~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (404)
T d1qz9a_ 215 ------AGADYAIGCTYKYLNGGPGSQAFVWV-SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSL 287 (404)
T ss_dssp ------HTCSEEEECSSSTTCCCTTCCCEEEE-CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHH
T ss_pred ------ccceEEEEechhhcccCCceEEEEEe-chhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhH
Confidence 35567888999988534334577776 555443332110 0011222222
Q ss_pred HHHHH---hhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCc----eeEEeeecCCcCCCCChhhHHHHHH
Q 019899 212 RLLIS---MLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ-LGIRCSESSA----GLYCWADMSGLIPSYSEKGELELWD 283 (334)
Q Consensus 212 ~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~ 283 (334)
..+.. .+.... .+.+.+....+......+.+.+.. .++++..|.. +-.+.+..++ +.++..
T Consensus 288 ~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~---------~~~v~~ 356 (404)
T d1qz9a_ 288 AMVECGLDVFAQTD--MASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE---------GYAVIQ 356 (404)
T ss_dssp HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT---------HHHHHH
T ss_pred HHHHHHHHHHHHhh--HHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCC---------HHHHHH
Confidence 22222 222211 122233333333333444444433 4777765432 2234455543 357777
Q ss_pred HHHHhcCeEEcCCCCcCCCCCCeEEEEec--CCCcccHHHHHHHHHHHHHHc
Q 019899 284 KLLNIAKINVTPGSACHCIEPGWFRCCFT--SLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 284 ~ll~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~~l~~~l~~l~~~~~~~ 333 (334)
. |.++||.+.. . .++.+|||++ +.|++|++++++.|++++++.
T Consensus 357 ~-L~~~gi~~~~---r---~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 357 A-LIDRGVIGDY---R---EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp H-HHTTTEECEE---E---TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred H-HHHCCCEEee---c---CCCeEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 7 5678986521 1 2568999996 368999999999999999863
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.86 E-value=2.4e-19 Score=153.87 Aligned_cols=287 Identities=13% Similarity=0.093 Sum_probs=198.8
Q ss_pred CCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh----ccCcEEEEEeCCCCCCccccHHHHHHHHHH
Q 019899 15 FDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF----RTGVELIPVHCRSTDNFAFSITALDQAFNQ 90 (334)
Q Consensus 15 ~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~----~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~ 90 (334)
+..-+|-..+ ++.|+.+++.+|++|||+|+..++..+++...-.. ....+++.+++++ +.+.+|.+++++.++.
T Consensus 84 a~~anVqp~S-Gs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~-~~~~ID~d~l~~~a~~ 161 (405)
T d1kl1a_ 84 AEHANVQPHS-GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARL 161 (405)
T ss_dssp CSEEECCCSS-HHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHH
T ss_pred CCcceeeccC-chHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccch-hcccccHHHHHHHHHh
Confidence 3333444444 56688999999999999999998877765543220 1246778888764 5568999999999998
Q ss_pred HHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEecccccc-ccCCCCcchhhhhhhccccCCCcEEEE
Q 019899 91 ARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGS-IFGNEEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 91 ~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
. +|++|++....+| ..+| .+++.++|++.|.+++.|-+|... ..++.-+.++ ...+++.
T Consensus 162 ~-----kPklIi~G~S~y~--r~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~----------~~aDvvt 221 (405)
T d1kl1a_ 162 H-----RPKLIVAAASAYP--RIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV----------PYAHFVT 221 (405)
T ss_dssp H-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST----------TTCSEEE
T ss_pred h-----CcceEEecccccc--cccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh----------hhhhhee
Confidence 7 9997777766655 4566 888888999999999999998543 3322222222 2245678
Q ss_pred ecccccCCCCCceEEEEeecCHHHHHHHHHhhccc-CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019899 170 YGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRFC-SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248 (334)
Q Consensus 170 ~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (334)
+|.+|++ +|.|.|.|.+ +.++.+.+.+...++ ..++.....++.+....+.+.+.+..+.+++.++++.|.+.|.+
T Consensus 222 ~tThKtl--rGPrgg~I~~-~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~ 298 (405)
T d1kl1a_ 222 TTTHKTL--RGPRGGMILC-QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN 298 (405)
T ss_dssp EESSSTT--CCCSCEEEEE-CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc--cCCCCceEEe-cchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999 6778899998 788888877654443 33333333333333333333455678889999999999999999
Q ss_pred CCCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc----CCCCcCCCCCCeEEEEecC-----CCccc
Q 019899 249 LGIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT----PGSACHCIEPGWFRCCFTS-----LTHED 318 (334)
Q Consensus 249 ~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~~~~~~~iRi~~~~-----~~~~~ 318 (334)
.|+++.. ...+..+++++.+... +. ..+.++|++.||.+. |+..-.+..++.+||+... ..++|
T Consensus 299 ~G~~vv~ggTd~H~vlvdl~~~~~-----~g-~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d 372 (405)
T d1kl1a_ 299 EGFTLVSGGTDNHLLLVDLRPQQL-----TG-KTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEE 372 (405)
T ss_dssp TTCEEGGGSCSSSEEEEECGGGTC-----CH-HHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHH
T ss_pred CCceeecCCCccceeeccccccCC-----cH-HHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHH
Confidence 9999873 3456677788854321 12 445556888999876 4322122234789999753 46789
Q ss_pred HHHHHHHHHHHHHH
Q 019899 319 IPLVIERIQKVAET 332 (334)
Q Consensus 319 l~~~l~~l~~~~~~ 332 (334)
++++.+.+.++++.
T Consensus 373 m~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 373 MDEIAAIIGLVLKN 386 (405)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988888753
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.86 E-value=5.8e-20 Score=162.71 Aligned_cols=288 Identities=13% Similarity=0.109 Sum_probs=192.5
Q ss_pred CCCCCCCCc-EEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhh--hhhccCcEEEEEeCCCCCCccccHHHHHHH
Q 019899 11 QAVSFDPSQ-IVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRD--IRFRTGVELIPVHCRSTDNFAFSITALDQA 87 (334)
Q Consensus 11 ~~~~~~~~~-i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~--~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~ 87 (334)
+.++++..+ |+++.|+|.++++++.++..+|+++++....+++.... +. ..+...+.+.. .++...+.+..++.
T Consensus 61 ~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 137 (388)
T d2ch1a1 61 YIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSE-RYGADVRTIEG--PPDRPFSLETLARA 137 (388)
T ss_dssp HHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-HTTCEEEEEEC--CTTSCCCHHHHHHH
T ss_pred HHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhh-hhccccccccc--ccccccchhhhhhh
Confidence 334455555 55566789999999999999999999887776654433 33 56777777776 34456777888887
Q ss_pred HHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEE
Q 019899 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVH 167 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (334)
+.+. +++++.+++.+|.||...+ ++++.++|+++|.++++|.+++.. .....+.. .+.++
T Consensus 138 ~~~~-----~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~~~~~~vD~~ss~g----~~pid~~~--------~~~d~ 197 (388)
T d2ch1a1 138 IELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASLC----GVPFYMDK--------WEIDA 197 (388)
T ss_dssp HHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBT----TBCCCTTT--------TTCCE
T ss_pred hccC-----Ccceeeeeecccccccccc---hhhhcchhccccceeeeeeeeccc----ccccchhc--------cCceE
Confidence 7764 8999999999999999999 888889999999999999998752 22233322 57778
Q ss_pred EEecccccCCCCCceEEEEeecCHHHHHHHHHhh-------------------------cccCCChHHHHHHHHhhCChH
Q 019899 168 IIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT-------------------------RFCSISAPTQRLLISMLSDTK 222 (334)
Q Consensus 168 ~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~~~~ 222 (334)
++.|.+|.++.+ -.+|+++. ++..++...... ...+.+.....++...+....
T Consensus 198 ~~~s~~K~~~gp-~G~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~ 275 (388)
T d2ch1a1 198 VYTGAQKVLGAP-PGITPISI-SPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA 275 (388)
T ss_dssp EECCCC-CCCCC-SSCEEEEE-CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccccccCCC-CeEEEEec-cHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHH
Confidence 889999988523 34677877 666666543211 011223334444444433211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSES----SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSA 298 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~ 298 (334)
........++.+.........+...++....+ ..+..+.+.+|+.++ +.++...|++++||.+.+|..
T Consensus 276 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~------~~~l~~~l~~~~gI~v~~G~~ 347 (388)
T d2ch1a1 276 --EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVD------WWKVSQYAMNNFSLEVQGGLG 347 (388)
T ss_dssp --HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC------HHHHHHHHHHHHCBCCBCCCG
T ss_pred --HhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCC------HHHHHHHHhhcCCEEEeCCCc
Confidence 12223344444444555555555544443221 123345577876443 468888988888999998875
Q ss_pred cCCCCCCeEEEE-ecCC-CcccHHHHHHHHHHHHHHc
Q 019899 299 CHCIEPGWFRCC-FTSL-THEDIPLVIERIQKVAETC 333 (334)
Q Consensus 299 ~~~~~~~~iRi~-~~~~-~~~~l~~~l~~l~~~~~~~ 333 (334)
+ ..++.+||| ++.. ++||++.+++.|+++++..
T Consensus 348 ~--~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~ 382 (388)
T d2ch1a1 348 P--TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 382 (388)
T ss_dssp G--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred c--ccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence 3 346689999 6654 7899999999999999863
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.85 E-value=7.5e-19 Score=152.89 Aligned_cols=270 Identities=16% Similarity=0.169 Sum_probs=183.1
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..+++++|..|+..++.+++++||+|+++...|.+....+.. ..|.++..++. .+.++..+.+.+
T Consensus 82 g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~-------~~~~~~~~~~~~--- 151 (398)
T d1qgna_ 82 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP-------ADVGALELALNQ--- 151 (398)
T ss_dssp CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS-------SCHHHHHHHHHH---
T ss_pred CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccc-------cchhhhhhhhcc---
Confidence 56899999999999999999999999999999999987665441 46888887763 234445444433
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
.++++|++.+|.||+..+.| +++|+++|+++|+++++|+.+.. +....++ +.+.+++++|++
T Consensus 152 --~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~at-------P~~~~Pl------~~GaDiVihS~T 213 (398)
T d1qgna_ 152 --KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFAT-------PLNQKAL------ALGADLVLHSAT 213 (398)
T ss_dssp --SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTC-------TTTCCTT------TTTCSEEEECTT
T ss_pred --ccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeec-------cccCCch------hhCCCEEEEech
Confidence 28999999999999999999 99999999999999999999863 1222222 267889999999
Q ss_pred ccCCCCC-ceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 019899 174 KDLSLPG-FRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLG 250 (334)
Q Consensus 174 K~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 250 (334)
|.++..+ .=.|.+.. ++++...++.....+ ..++.....+..-++.. .-+.++..+++..+.+.|+++.
T Consensus 214 Ky~~Ghsdv~~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL-------~lRm~~~~~nA~~lA~~L~~hp 285 (398)
T d1qgna_ 214 KFLGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTL-------HLRVQQQNSTALRMAEILEAHP 285 (398)
T ss_dssp TTTTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGH-------HHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhcCcccceeehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHHhCC
Confidence 9995454 33455554 888887777655443 45666666666666553 3345667788888888888762
Q ss_pred -Cc---cc---------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCC----------
Q 019899 251 -IR---CS---------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHC---------- 301 (334)
Q Consensus 251 -~~---~~---------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------- 301 (334)
++ +. ...++ .+.+++... .+.+..+++. ++-..+...-|.....
T Consensus 286 ~V~~V~yPgL~s~p~~~~~~~~~~g~g~-~~sf~~~g~-----~~~a~~f~~~-L~l~~~a~SlGg~~SLi~~p~~~th~ 358 (398)
T d1qgna_ 286 KVRHVYYPGLQSHPEHHIAKKQMTGFGG-AVSFEVDGD-----LLTTAKFVDA-LKIPYIAPSFGGCESIVDQPAIMSYW 358 (398)
T ss_dssp TEEEEECTTSSSSTTHHHHHHHCSCCCS-EEEEEESSC-----HHHHHHHHHH-CSSSEECSCCCSSSCEEECHHHHHST
T ss_pred CeeecCCCCCCCCcchhhhhhhcCCCCc-eeeeeecCC-----HHHHHHHHHc-CCcceeeeCCCCCcceeeCcchhccc
Confidence 21 11 11233 344555431 1222334433 2211122222221100
Q ss_pred -----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 302 -----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 -----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
..++.+|+|++ -|+.+++++.|++++++
T Consensus 359 ~~~~~~~~~~Gi~~~liRlSvG---lEd~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 359 DLSQSDRAKYGIMDNLVRFSFG---VEDFDDLKADILQALDS 397 (398)
T ss_dssp TSCHHHHHTTTCCSSEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHhcCCCcCEEEEEec---cCCHHHHHHHHHHHHhc
Confidence 12467999999 78888899999999876
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.85 E-value=5.7e-20 Score=165.62 Aligned_cols=308 Identities=17% Similarity=0.149 Sum_probs=206.4
Q ss_pred hhhhhhhhcCCCC-------CCCCcEEEecCcHHHHHHHHHHhcC----------C---------CCeEEecCCCCCChh
Q 019899 2 AGFMSQVLGQAVS-------FDPSQIVLTAGATPAVEILCFCLAD----------H---------GNALLVPSPYYPGFD 55 (334)
Q Consensus 2 ~~~~~~~~~~~~~-------~~~~~i~~~~g~~~~~~~~~~~l~~----------~---------gd~vl~~~p~~~~~~ 55 (334)
.+|+.+.++ ++ .....-++|+|+|+++..++.+... . .-.|++++-+|+++.
T Consensus 119 ~~wl~~l~g--~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ 196 (476)
T d1js3a_ 119 MDWLGKMLQ--LPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE 196 (476)
T ss_dssp HHHHHHHTT--CCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH
T ss_pred HHHHHHHhC--CCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHH
Confidence 467777776 32 1233578999999999888765321 1 125888899999999
Q ss_pred hhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEE
Q 019899 56 RDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVIS 135 (334)
Q Consensus 56 ~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~ 135 (334)
.++. ..|..++.+|+ ++++.+|+++|+++|++...+|..+-+|+.+.+++.+|.+-| +++|.++|++|++|+++
T Consensus 197 ka~~-~lGl~~~~v~~--d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp---l~~I~~i~~~~~~wlHV 270 (476)
T d1js3a_ 197 RAGL-IGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHV 270 (476)
T ss_dssp HHHH-HHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred HHHH-hcCceEEEecc--CCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc---HHHHHHHHHhcCcEEEE
Confidence 9998 89999999998 566799999999999998888888888999999999999999 99999999999999999
Q ss_pred eccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhh---------c----
Q 019899 136 DEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLT---------R---- 202 (334)
Q Consensus 136 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~---------~---- 202 (334)
|.+|+++............-. ...+-+..++||+++ .....|+++.+++......-... .
T Consensus 271 DAA~Gg~~~~~~~~~~~~~gi------~~aDSit~d~HK~l~-~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (476)
T d1js3a_ 271 DAAYAGSAFICPEFRHLLNGV------EFADSFNFNPHKWLL-VNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLI 343 (476)
T ss_dssp ECTTGGGGGGSTTTGGGGTTG------GGCSEEEECHHHHSS-CCSSCEEEEESCHHHHHGGGC------------CCSC
T ss_pred ecccchhhhhhcchhhhhcCC------cccceeeecCccccc-cCCcceeecccchHHHHHHHhcChhhhcccccccccc
Confidence 999988654332222222111 223345568999987 44567888887765543211000 0
Q ss_pred --c--cC--CChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCCh
Q 019899 203 --F--CS--ISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSE 275 (334)
Q Consensus 203 --~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~ 275 (334)
. ++ .+. ...++..++.-..+..+.+++..++..+.++++.+.|++. ++++..++.-..+.|++.+. .
T Consensus 344 ~~~~~~~~~~sr-~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~-----d 417 (476)
T d1js3a_ 344 TDYRHWQLPLGR-RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS-----D 417 (476)
T ss_dssp CCGGGSSSCSCC-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC-----H
T ss_pred ccccccccccch-hhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCC-----h
Confidence 0 00 011 0111111111111224556778888889999999999987 88877554433344565432 1
Q ss_pred hhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC--CCcccHHHHHHHHHHHHHHc
Q 019899 276 KGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS--LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 276 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~~ 333 (334)
.-..++.+++.++..+.+.+... .+..++|+++++ ++++|++.+++.|+++.+++
T Consensus 418 ~~n~~l~~~l~~~G~~~~s~t~~---~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 418 GLNEALLERINSARKIHLVPCRL---RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp HHHHHHHHHHHHHTSCBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEeeeeE---CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 12245777755543354443221 123479999873 57889999999999988763
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=5.3e-19 Score=152.47 Aligned_cols=289 Identities=11% Similarity=0.065 Sum_probs=197.6
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhc-----cCcEEEEEeCCCCCCccccHHHHHHH
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFR-----TGVELIPVHCRSTDNFAFSITALDQA 87 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-----~g~~v~~v~~~~~~~~~~~~~~l~~~ 87 (334)
|++...+|-+ .+++.|+.+++.++++|||+|+..+..++++..... . ...+.+.+++++ ...+|.+++++.
T Consensus 85 F~a~~anVqp-~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~-~~~~~g~~~~~~~y~~d~--~~~IDyd~l~~~ 160 (416)
T d1dfoa_ 85 FGADYANVQP-HSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGS-PVNFSGKLYNIVPYGIDA--TGHIDYADLEKQ 160 (416)
T ss_dssp HTCSEEECCC-SSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTC-TTSHHHHHSEEEEECBCS--SSSBCHHHHHHH
T ss_pred hCCCcceeec-ccCccHHHHHHHHhcCCCCeeeeccccccccccccc-cccccCceEEEEecccCC--ccCccHHHHHHH
Confidence 3333334444 456679999999999999999999998888766443 2 235677777743 446999999999
Q ss_pred HHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEE
Q 019899 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVH 167 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (334)
.++. ++++|++....+| ..+| .+++.++|++.|.++++|.+|......+..+++.. ...++
T Consensus 161 a~~~-----kPklIi~G~S~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~---------~~aDv 221 (416)
T d1dfoa_ 161 AKEH-----KPKMIIGGFSAYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPV---------PHAHV 221 (416)
T ss_dssp HHHH-----CCSEEEEECSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCT---------TTSSE
T ss_pred HHHh-----ccceEEecccccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceeccccCCcc---------cccce
Confidence 9987 9998887755554 6677 88899999999999999999865322222222211 12357
Q ss_pred EEecccccCCCCCceEEEEeec--CHHHHHHHHHhhccc-CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 168 IIYGLSKDLSLPGFRTGVIYSY--NESVLAAAKKLTRFC-SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVA 244 (334)
Q Consensus 168 ~~~s~sK~~~~~g~r~g~i~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
+.+|.+|++ +|.|.|.|+++ ++++.+.+.+...++ ..++.....++.+....+.+...+..+.+++.++++.|.+
T Consensus 222 vt~tThKtl--rGPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~ 299 (416)
T d1dfoa_ 222 VTTTTHKTL--AGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE 299 (416)
T ss_dssp EEEESSSTT--CCCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhcc--cCCCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 888999999 67788999984 367777776544443 2333333333333322222234457788999999999999
Q ss_pred HHHhCCCcccC-CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc----CCCCcCCCCCCeEEEEecC-----C
Q 019899 245 GLKQLGIRCSE-SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT----PGSACHCIEPGWFRCCFTS-----L 314 (334)
Q Consensus 245 ~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~~~~~~~iRi~~~~-----~ 314 (334)
.|.+.|+++.. ...+..+++++.+... +. ..+..+|++.||.+. |+..-.+-.++.|||+... .
T Consensus 300 ~L~~~G~~iv~ggTdnHlvlvdl~~~~~-----~G-~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~ 373 (416)
T d1dfoa_ 300 VFLERGYKVVSGGTDNHLFLVDLVDKNL-----TG-KEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGF 373 (416)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECGGGTC-----CH-HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred HHHhCCcccccCCCCCceeEEEecccCC-----CH-HHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCC
Confidence 99999999873 4455667788854321 22 445555888999875 3322122235789999753 4
Q ss_pred CcccHHHHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKVAET 332 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~~~~ 332 (334)
.++|++++.+.+.++++.
T Consensus 374 ~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 374 KEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHc
Confidence 678999999988888754
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.85 E-value=5.8e-20 Score=162.03 Aligned_cols=286 Identities=14% Similarity=0.090 Sum_probs=192.7
Q ss_pred CCCCCCC-cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh-hccCcEEEEEeCCCCCCccccHHHHHHHHH
Q 019899 12 AVSFDPS-QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR-FRTGVELIPVHCRSTDNFAFSITALDQAFN 89 (334)
Q Consensus 12 ~~~~~~~-~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~ 89 (334)
.++.+.+ .|+++.|+|.+++.++..+..+++++++....+++...... ...+.....+.. ..+...+.+..+....
T Consensus 63 ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 140 (377)
T d1vjoa_ 63 VWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISK--PWGEVFSLEELRTALE 140 (377)
T ss_dssp HHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHH
T ss_pred HhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhhhccccccccc--CCCCcccchhhhhhhh
Confidence 3445444 67777788999999999999999999988877665433221 135566666555 3444556666666655
Q ss_pred HHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEE
Q 019899 90 QARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 90 ~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
+. +++++.+++.+|.||.+.| ++++.++|+++|.++++|.+++. +....++.. .+.++++
T Consensus 141 ~~-----~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~g~~~~vDa~~~~----g~~~~~~~~--------~~~d~~~ 200 (377)
T d1vjoa_ 141 TH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTSL----GGVPIFLDA--------WGVDLAY 200 (377)
T ss_dssp HH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTT----TTSCCCTTT--------TTCSEEE
T ss_pred cC-----cceeeeeeeeeccceeeec---hhhhhhhhhhccceEEEecchhh----hhhhhcccc--------cccceee
Confidence 53 7888999999999999999 99999999999999999999875 222223322 5667888
Q ss_pred ecccccCCCCCceEEEEeecCHHHHHHHHHhhc-------------------cc---CCChHHHHHHHHhhCChHHHHHH
Q 019899 170 YGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR-------------------FC---SISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 170 ~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
.|.+|.++.++ .+|+++. ++..++....... .+ ..+......+..+.... ....
T Consensus 201 ~s~~K~~~gp~-g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~g 276 (377)
T d1vjoa_ 201 SCSQKGLGCSP-GASPFTM-SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI--AQEG 276 (377)
T ss_dssp CCSSSTTCSCS-SCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH--HHHC
T ss_pred ecccccccCCC-EEEEecc-hhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhh--hhcC
Confidence 89999885333 4677776 6766665443211 01 11222222222222211 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCC---ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQLGIRCSESS---AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
.....++.+++...+.+.+...++....+. ....+.+.+|+.. +..++...|++++||.+..|... ..+
T Consensus 277 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~------~~~~l~~~L~~~~gI~v~~G~~~--~~~ 348 (377)
T d1vjoa_ 277 LANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGV------DGKAVARRLLNEHNIEVGGGLGE--LAG 348 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTC------CHHHHHHHHHHHHCEECEECCGG--GTT
T ss_pred chHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCC------CHHHHHHHHHhcCCEEEecCccc--ccC
Confidence 466777788888899999988877654322 2233445666543 34688899888899999887753 346
Q ss_pred CeEEEEe-cC-CCcccHHHHHHHHHHHHH
Q 019899 305 GWFRCCF-TS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 305 ~~iRi~~-~~-~~~~~l~~~l~~l~~~~~ 331 (334)
+.+|+|+ ++ .++||+++++++|+++++
T Consensus 349 ~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 349 KVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp TEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 7899994 64 478999999999999874
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=7.5e-20 Score=158.91 Aligned_cols=278 Identities=15% Similarity=0.083 Sum_probs=189.6
Q ss_pred CCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCC--hhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHH
Q 019899 14 SFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPG--FDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQA 91 (334)
Q Consensus 14 ~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~ 91 (334)
+.+.+.++++.|+|.++++++.+++.+||+|++....+++ +...++ .+|.++..+.. +.+..++.+++. +
T Consensus 47 ~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~-~~~~~~~~~~~--~~g~~~~~~~~~----~- 118 (348)
T d1iuga_ 47 RTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIAL-EAGLVVERLDY--PYGDTPRPEDVA----K- 118 (348)
T ss_dssp TCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-HTTCEEEEEEC--CTTCCCCTTTSC----C-
T ss_pred CCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHH-hcCcccccccc--cCCCcccccccc----c-
Confidence 3456678889999999999999999999999888776543 233344 67888888776 344445544432 1
Q ss_pred HHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEE
Q 019899 92 RKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREK--NIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 92 ~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~--~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
.+++++++++..+.||.+.| ++++.++|+++ +.++++|.+.+... ...++.. ++.++++
T Consensus 119 ----~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~~~l~~vDavss~g~----~~i~~d~--------~~iD~~~ 179 (348)
T d1iuga_ 119 ----EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSLLV----GEVALEA--------MGVDAAA 179 (348)
T ss_dssp ----SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTBTT----BCCCSGG--------GTCSEEE
T ss_pred ----cCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhccceeechhhhcccc----ccccccc--------ccCCEEE
Confidence 37889999999999999999 88888888776 47888999876522 2223221 4667888
Q ss_pred ecccccC-CCCCceEEEEeecCHHHHHHHHH----------------hhcccCCChHHHHHHHHhhCChHHHHHHHHHHH
Q 019899 170 YGLSKDL-SLPGFRTGVIYSYNESVLAAAKK----------------LTRFCSISAPTQRLLISMLSDTKFIQEYLETNK 232 (334)
Q Consensus 170 ~s~sK~~-~~~g~r~g~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (334)
+|..|.+ |.+| +|+++. +++..++++. ...+++++....+++.++++.. .+...+..
T Consensus 180 ~~sqK~l~gppG--~~~v~~-s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~---~~~~~~~~ 253 (348)
T d1iuga_ 180 SGSQKGLMCPPG--LGFVAL-SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV---LPRLEEHL 253 (348)
T ss_dssp EESSSTTCCCSC--EEEEEE-CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---GGGHHHHH
T ss_pred eccccceecCCc--eeeeee-chHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHH---HHHHhHHH
Confidence 9999999 6666 688888 6666554321 1223566667777777776432 11122333
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCC-ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEe
Q 019899 233 RRIKKLYDSFVAGLKQLGIRCSESS-AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCF 311 (334)
Q Consensus 233 ~~~~~~~~~~~~~l~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~ 311 (334)
++.+...+.+...++..|++..... .+-.+.+.+|+.++ ..++... ++++||.+.+|.. ...+..+||+.
T Consensus 254 ~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~------~~~~~~~-l~~~gi~i~~G~~--~l~~~~~RIg~ 324 (348)
T d1iuga_ 254 ALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP------YARVKEA-FAQRGAVIAGGQG--PLKGKVFRLSL 324 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC------HHHHHHH-HHTTTEECEECCG--GGTTTEEEECC
T ss_pred HHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCC------HHHHHHH-HHHCCeEEEcCcc--ccCCCEEEEeC
Confidence 3334444555666666788765322 12235577776544 3567766 6779999988763 33456899985
Q ss_pred c-CCCcccHHHHHHHHHHHHHHc
Q 019899 312 T-SLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 312 ~-~~~~~~l~~~l~~l~~~~~~~ 333 (334)
. ..+++|++.+++.|++++++.
T Consensus 325 mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 325 MGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 4 579999999999999999863
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.84 E-value=4.4e-20 Score=158.81 Aligned_cols=296 Identities=14% Similarity=0.162 Sum_probs=181.2
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh-ccCcEEEEEeCCCCCCccccH
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF-RTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~-~~g~~v~~v~~~~~~~~~~~~ 81 (334)
+.+++++++.+++++++|++|+|+|++++.++..+..+++.++++.+.|.++...... ..+.....+.. .....+.
T Consensus 38 ~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 114 (340)
T d1svva_ 38 AKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPC---PDGKLRV 114 (340)
T ss_dssp HHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECC---TTSCCCH
T ss_pred HHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecccccccceeeeeccc---ccccccc
Confidence 3466667777778888999999999999999999999999999998887765543330 23333333332 2223344
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCC-cchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEE-FVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~-~~~~~~~~~~~~ 160 (334)
+...++.............++++.+.|++|.+.+.+++..+.+.|.++|.++++|++|......... ........
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~---- 190 (340)
T d1svva_ 115 ADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA---- 190 (340)
T ss_dssp HHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH----
T ss_pred hhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccccccccc----
Confidence 4444444332222223444666666667788889899999999999999999999998764432221 11111111
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-h-hcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-L-TRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
....+...+..|..+ +.+.++... .......... . ... .........++..++....+ ....++..
T Consensus 191 --~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~-----~~~~~~~~ 260 (340)
T d1svva_ 191 --RLTDMFYIGATKAGG--MFGEALIIL-NDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLF-----FELGAHSN 260 (340)
T ss_dssp --HHCSEEEEECTTTTC--SSCEEEEEC-SGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHH-----HHHHHHHH
T ss_pred --ccceeeecCCccccc--ccccccccc-chhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHH-----HHHHHHHH
Confidence 122233445555443 333455554 3332222221 1 111 12223334444444444322 34455677
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CC
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LT 315 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~ 315 (334)
.++.++.+.|+..|+++..|..+.++++++++ +...+|+++..+...+.. ...++.+|+++++ .|
T Consensus 261 ~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~~~-----------~~~~~l~~~~~~~~~~~~---~~~~~~vR~s~~~~~t 326 (340)
T d1svva_ 261 KMAAILKAGLEACGIRLAWPSASNQLFPILEN-----------TMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATE 326 (340)
T ss_dssp HHHHHHHHHHHHTTCCBSSCCSSSEECBEEEH-----------HHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCC
T ss_pred HHHhhhHHHHhcCCCeeecCCCceEEEEeCCH-----------HHHHHHHHhhhhhccccc---CCCCcEEEEECCCCCC
Confidence 78888999999999998877777777787763 456665554222222211 1235789999885 69
Q ss_pred cccHHHHHHHHHHH
Q 019899 316 HEDIPLVIERIQKV 329 (334)
Q Consensus 316 ~~~l~~~l~~l~~~ 329 (334)
++|++++++.|+++
T Consensus 327 ~edid~~l~~l~~l 340 (340)
T d1svva_ 327 EKECHRFVEVLKRL 340 (340)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999873
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=1.2e-19 Score=160.03 Aligned_cols=277 Identities=13% Similarity=0.144 Sum_probs=180.7
Q ss_pred CCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 17 PSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
.++++.++++|+|+.+++.++ .++||+|++|..+|.+...++. ..|.+++.+++++ +.+.+|+++|++++++
T Consensus 46 ~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~-~~g~~pv~~d~~~-~~~~~d~~~l~~~i~~----- 118 (376)
T d1mdoa_ 46 NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-LLGANPVMVDVDR-DTLMVTPEHIEAAITP----- 118 (376)
T ss_dssp CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-HTTCEEEEECBCT-TTCCBCHHHHHHHCCT-----
T ss_pred cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchh-ccccceeeecccc-cccCCCHHHHHHhcCC-----
Confidence 467899999999999999999 7899999999999999999999 9999999999864 5678999999999986
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcEEEEecccc
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRVHIIYGLSK 174 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK 174 (334)
++++|+++ +..|...+ +.+|.++|+++|++||+|++++.+. +.+. ... . .+..++-...+|
T Consensus 119 -~tkaIi~~---h~~G~~~~---~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~---~~g---~-----~g~~~~Sf~~~K 180 (376)
T d1mdoa_ 119 -QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGR---HIG---A-----RGTAIFSFHAIK 180 (376)
T ss_dssp -TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE---ETT---S-----SSEEEEECCTTS
T ss_pred -CCeEEEEe---CCCCCccc---hhHHHHHHHhcCceEEeccchhccCeeCCe---ecc---c-----ccCccccCCCcC
Confidence 89988876 46788888 8899999999999999999987643 1111 110 0 233233334468
Q ss_pred cCCCCCceEEEEeecCHHHHHHHHHhhcccC----------------------C---ChHHHHHHHHhhCChHHHHHHHH
Q 019899 175 DLSLPGFRTGVIYSYNESVLAAAKKLTRFCS----------------------I---SAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 175 ~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~~----------------------~---~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.++ .| ..|.+++.++++.++++.....+. . .+..+.++... . ...+.
T Consensus 181 ~l~-~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~--q----L~~~~ 252 (376)
T d1mdoa_ 181 NIT-CA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALA--Q----LQKLD 252 (376)
T ss_dssp SSC-SS-SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHH--H----HHTHH
T ss_pred CCC-CC-CCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhh--h----hhhhh
Confidence 885 33 358888888888888876543210 0 01112211111 1 11223
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc-ccCCCc----eeEEe-eecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc----
Q 019899 230 TNKRRIKKLYDSFVAGLKQLGIR-CSESSA----GLYCW-ADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC---- 299 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~----g~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~---- 299 (334)
+..++-++.++++.+.|.+.... ...... .++.+ +.++... ...+..++.+. |+++||.+++....
T Consensus 253 ~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Rd~l~~~-L~~~gI~~~~~y~~~~~~ 328 (376)
T d1mdoa_ 253 ALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEAR---CGITRDALMAS-LKTKGIGTGLHFRAAHTQ 328 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHH---HSSCHHHHHHH-HHHTTBCCBCCCCCGGGS
T ss_pred HHHHHHhhhhhhhhhhccccccccccccccccccccccccccccccc---chhhHHHHHHH-HHHCCCCeeeECcchhcC
Confidence 44455666677888888776433 222211 11111 1111100 00123467777 56689988643210
Q ss_pred -------CCC--------CCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 300 -------HCI--------EPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 300 -------~~~--------~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
... ..+.+.+.+.. ++++|+++.++.|++++
T Consensus 329 ~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 329 KYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp HHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 000 01346665553 69999999999999875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.7e-18 Score=150.87 Aligned_cols=269 Identities=12% Similarity=0.054 Sum_probs=182.7
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..+++++|..|+..++.+++++||+|+++...|.+....++. ..|.++..++. .|.+++++++++
T Consensus 73 ~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~-------~d~~~~~~~i~~--- 142 (391)
T d1cl1a_ 73 GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP-------LIGADIVKHLQP--- 142 (391)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT-------TCGGGGGGTCCT---
T ss_pred CccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccC-------cccccccccccc---
Confidence 46899999999999999999999999999999999987776552 36888888773 356778888876
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHh--cCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEec
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFARE--KNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYG 171 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 171 (334)
++++|++.+|.||+..+.| +++++++|++ +|+++++|+.+.. +....++. .+.+++++|
T Consensus 143 ---~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~at-------P~~~~Pl~------~GaDivvhS 203 (391)
T d1cl1a_ 143 ---NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAA-------GVLFKALD------FGIDVSIQA 203 (391)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTT-------TTSSCGGG------GTCSEEEEE
T ss_pred ---ccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccc-------hhhhcccc------cccceEEee
Confidence 8999999999999999999 8888888865 5999999999864 12222221 577899999
Q ss_pred ccccCCCCC-ceEEEEeecCHHHHHHHHHhhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019899 172 LSKDLSLPG-FRTGVIYSYNESVLAAAKKLTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQ 248 (334)
Q Consensus 172 ~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (334)
.+|.++..+ .=.|.++. +++..+.+...... ...++.....+.+-++.. .-+.++..+++..+.+.|++
T Consensus 204 ~TKy~~GhsdvlgG~vv~-~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL-------~lR~~~~~~nA~~vA~~L~~ 275 (391)
T d1cl1a_ 204 ATKYLVGHSDAMIGTAVC-NARCWEQLRENAYLMGQMVDADTAYITSRGLRTL-------GVRLRQHHESSLKVAEWLAE 275 (391)
T ss_dssp TTTTTTCSSSCCCEEEEE-CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred cchhccccccccccceec-cccccccchhhhhcccccCCchhhhhhhccchhH-------HHHHHHHHHHHHHHHHHHHh
Confidence 999995444 34556665 66666666554433 345666655555555553 34456677888888888888
Q ss_pred CC-Ccc---c---------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeE---EcCCCCcCC-----
Q 019899 249 LG-IRC---S---------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKIN---VTPGSACHC----- 301 (334)
Q Consensus 249 ~g-~~~---~---------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~---v~~g~~~~~----- 301 (334)
+. +.. . ...+|++ .+.+....+ .+-+.+.++.-.+. ..-|.....
T Consensus 276 hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~-sf~l~~~~~-------~e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~ 347 (391)
T d1cl1a_ 276 HPQVARVNHPALPGSKGHEFWKRDFTGSSGLF-SFVLKKKLN-------NEELANYLDNFSLFSMAYSWGGYESLILANQ 347 (391)
T ss_dssp CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEE-EEEESSCCC-------HHHHHHHHTTCSSCBCCSCCCSSSCEEEEEC
T ss_pred cccccccccccccchhhHHHHhhccCCCCcce-eeeecCCCC-------HHHHHHHHHcCCcceEeeCCCCCccceeCCc
Confidence 62 211 1 1123433 244443222 12222334433332 122221110
Q ss_pred --------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 302 --------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 302 --------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++.+|+|++ -|+.+++++.|.+++++.
T Consensus 348 ~~~~~~~~~~~~~gi~~~liRlSVG---lEd~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 348 PEHIAAIRPQGEIDFSGTLIRLHIG---LEDVDDLIADLDAGFARI 390 (391)
T ss_dssp HHHHHHTSTTCCCCCCSCEEEEECC---SSCHHHHHHHHHHHHHHT
T ss_pred ccccccCCchHhcCCCcCEEEEEec---cCCHHHHHHHHHHHHHhh
Confidence 12356999999 788889999999998763
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=9.6e-20 Score=157.70 Aligned_cols=294 Identities=13% Similarity=0.078 Sum_probs=181.3
Q ss_pred hhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh--hccCcEEEEEeCCCCCCccccH
Q 019899 4 FMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR--FRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~--~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
.+++.+++.++. +..+++|+|+|+++..++..++..++.+++....+.++..... ...+..+..++. ..+...++
T Consensus 42 ~l~~~la~~~g~-~~~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 118 (345)
T d1v72a1 42 QVKRKFCEIFER-DVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD--GPAAKLDI 118 (345)
T ss_dssp HHHHHHHHHHTS-CCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC--CGGGCCCH
T ss_pred HHHHHHHHHHCC-CcEEEECCchHHHHHHHHHHHHhcCCccccccccceeeechhhHHHhcCcccccccc--cccccccH
Confidence 344444444553 3579999999999999999999999998888877766555433 134555555543 45567899
Q ss_pred HHHHHHHHHHHHcCCcee-EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccc
Q 019899 82 TALDQAFNQARKRGVKVR-GILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEE 160 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~-~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
+.+++.+.+.......+. .++...+.|+.|...+.++++++.++|++||+++++|+++..+.+.... .......
T Consensus 119 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~~~---- 193 (345)
T d1v72a1 119 VRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLG-CSPAEMT---- 193 (345)
T ss_dssp HHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT-CCTTTTT----
T ss_pred HHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccc-cCHHHhh----
Confidence 999998875432222233 3455556788999999999999999999999999999998764332111 1111100
Q ss_pred cCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH-h-hcccCCCh--HHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 161 VDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK-L-TRFCSISA--PTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 161 ~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
..........+.+|..+ .+.+.+ +.. .......... . ....+.+. ....+....+.... ..+...+..
T Consensus 194 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~-----~~~~~~~~~ 265 (345)
T d1v72a1 194 WKAGVDALSFGATKNGV-LAAEAI-VLF-NTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDL-----WLRNARKAN 265 (345)
T ss_dssp GGGTCCEEEECCGGGTC-SSCEEE-EES-SGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTH-----HHHHHHHHH
T ss_pred ccccccccccCcccccc-cccccc-ccc-hhhhhhhccccccccccccchhhHHhhhhHHHHHHhh-----hhhhccchh
Confidence 00233334444444333 222222 222 3332222222 1 11222222 22223333333322 233445555
Q ss_pred HHHHHHHHHHHhC-CCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-C
Q 019899 237 KLYDSFVAGLKQL-GIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-L 314 (334)
Q Consensus 237 ~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~ 314 (334)
++..++.+.+.++ ++.+..|..+.+++++++. +.+..|++ +||.+.++. ..++.+||+++. +
T Consensus 266 ~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~~-----------~~~~~L~~-~gi~v~~~~----~~~~~lR~~~~~~~ 329 (345)
T d1v72a1 266 AAAQRLAQGLEGLGGVEVLGGTEANILFCRLDS-----------AMIDALLK-AGFGFYHDR----WGPNVVRFVTSFAT 329 (345)
T ss_dssp HHHHHHHHHHTTCTTEEEESCCCSSEEEEEECH-----------HHHHHHHH-TTCBCBCSS----SSTTEEEEECCTTC
T ss_pred hHHHHHHHHHHhcCCcEeccCCCccEEEEEcCH-----------HHHHHHHH-cCCCccccC----CCCCEEEEECCCCC
Confidence 6667777888776 7777777677778888763 56677555 798876543 236799999985 6
Q ss_pred CcccHHHHHHHHHHH
Q 019899 315 THEDIPLVIERIQKV 329 (334)
Q Consensus 315 ~~~~l~~~l~~l~~~ 329 (334)
|+||++++++.|+++
T Consensus 330 T~edid~~le~lr~a 344 (345)
T d1v72a1 330 TAEDVDHLLNQVRLA 344 (345)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999874
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.82 E-value=1.8e-18 Score=147.79 Aligned_cols=266 Identities=17% Similarity=0.202 Sum_probs=179.3
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..+++++|.+|+..++.+++++||+|+++.+.|.+....++. ..|.++..++. .|.+.+++++++
T Consensus 13 ~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~-------~d~~~~~~~i~~--- 82 (331)
T d1pffa_ 13 AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-------AVPGNIEKHLKP--- 82 (331)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-------TSTTHHHHTCCT---
T ss_pred CCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecc-------cchhhHhhhccc---
Confidence 56789999999999999999999999999999999887665541 47999988874 367889998876
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHH-HhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFA-REKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~-~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
++++|++.+|.||+..+.+ ++.+++++ +++|+++++|+.+.. +....++. .+.+++++|.
T Consensus 83 ---~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~at-------p~~~~pl~------~GaDiVv~S~ 143 (331)
T d1pffa_ 83 ---NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFAS-------PILTNPLD------LGVDIVVHSA 143 (331)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTH-------HHHCCGGG------GTCSEEEEET
T ss_pred ---ccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccc-------cccccccc------cCCCEEEecc
Confidence 8999999999999999999 88777775 678999999999763 22222222 5778999999
Q ss_pred cccCCCCC-ceEEEEeecCHHHHHHHHHh--hcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 173 SKDLSLPG-FRTGVIYSYNESVLAAAKKL--TRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLK 247 (334)
Q Consensus 173 sK~~~~~g-~r~g~i~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (334)
+|.++..+ .=.|.++. +++.....+.. ... ...++.....+.+-++. +..+.++..+++..+.+.|+
T Consensus 144 TKy~~Gh~d~~~G~v~~-~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~~Rm~~~~~nA~~lA~~L~ 215 (331)
T d1pffa_ 144 TKYINGHTDVVAGLVCS-RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-------LDMRVKRAAENAQKVAEFLH 215 (331)
T ss_dssp TTTTSSSSSCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCccccccccc-cccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 99995443 44566666 66654444332 222 23344444444443322 34556677888888999998
Q ss_pred hC-CCccc-C----------------CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCe---EEcCCCCcCC-----
Q 019899 248 QL-GIRCS-E----------------SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKI---NVTPGSACHC----- 301 (334)
Q Consensus 248 ~~-g~~~~-~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~~g~~~~~----- 301 (334)
++ .++.+ - ...|..+.+.+.. .+-+.++++.-.+ ...-|.....
T Consensus 216 ~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~----------~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~ 285 (331)
T d1pffa_ 216 EHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG----------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPA 285 (331)
T ss_dssp HCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----------HHHHHHHHHTCSSSEECSSCCSSSCEEECHH
T ss_pred hCCcEEeeccccccCccHHHHHhhcccccCcccceeecc----------HHHHHHHHHhCCcceecccCCCCceeEeCcc
Confidence 87 22211 1 1123334455542 1223333444332 2222322100
Q ss_pred ----------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 302 ----------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 302 ----------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
..++.+|+|++ -|+.+++++.|.+++++
T Consensus 286 ~~~h~~~~~e~~~~~Gi~~~liRlsvG---lE~~~DLi~Dl~~AL~~ 329 (331)
T d1pffa_ 286 SMTHAGVPKEEREAAGLTDNLIRLSVG---CENVQDIIDDLKQALDL 329 (331)
T ss_dssp HHTSTTSCHHHHHHTTCCTTEEEEECC---SSCHHHHHHHHHHHHHT
T ss_pred ccccccCCHHHHHhcCCCcCeEEEEee---eCCHHHHHHHHHHHHHH
Confidence 12467999999 68888889999998875
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=8.4e-19 Score=157.05 Aligned_cols=307 Identities=12% Similarity=0.039 Sum_probs=199.0
Q ss_pred hhhhhhhcCCCCCCCC---cEEEecCcHHHHHHHHHHhc------------CCCCeEEecCCCCCChhhhhhhccCcEEE
Q 019899 3 GFMSQVLGQAVSFDPS---QIVLTAGATPAVEILCFCLA------------DHGNALLVPSPYYPGFDRDIRFRTGVELI 67 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~---~i~~~~g~~~~~~~~~~~l~------------~~gd~vl~~~p~~~~~~~~~~~~~g~~v~ 67 (334)
+|+.+.++ .+...+ .=.+|+|+|+|+..++.+.. .....++++...|.++...++ ..|.+++
T Consensus 100 ~~la~L~~--~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~-~~gi~~~ 176 (450)
T d1pmma_ 100 NMVADLWH--APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFAR-YWDVELR 176 (450)
T ss_dssp HHHHHHTT--CCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHH-HTTCEEE
T ss_pred HHHHHHhC--CCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHH-HcCCCce
Confidence 46666555 322111 24899999999998877642 122357778888999999999 8999999
Q ss_pred EEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHH---HHHhcCcEEEEecccccccc
Q 019899 68 PVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLD---FAREKNIHVISDEIYGGSIF 144 (334)
Q Consensus 68 ~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~---~~~~~~~~vi~D~~~~~~~~ 144 (334)
.+++.+ +++.+|+++|++++++ ++.+|+.+.++|.||.+-|.+++.++++ .|+++|+|+++|.+|+++..
T Consensus 177 ~v~~~~-~~~~~d~~~L~~~i~~------~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~ 249 (450)
T d1pmma_ 177 EIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLA 249 (450)
T ss_dssp ECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH
T ss_pred EeeecC-CCCcCcHHHHHHHhhh------CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhcccee
Confidence 999854 4579999999999987 7888999999999999999776665554 36779999999999986432
Q ss_pred --CCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc-c-------cC--CCh--HH
Q 019899 145 --GNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR-F-------CS--ISA--PT 210 (334)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~-~-------~~--~~~--~~ 210 (334)
......... +. .+.+.+..|.+|+++ ....+||++.+++........... + ++ .+. ..
T Consensus 250 p~~~~~~~~~~------~~-~~aDSi~~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~ 321 (450)
T d1pmma_ 250 PFVAPDIVWDF------RL-PRVKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQ 321 (450)
T ss_dssp HHHCTTCCCST------TS-TTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHH
T ss_pred eeechhhhhhh------cc-cceeEeecChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHH
Confidence 111111111 11 355667789999775 556689999877664322211110 0 11 111 11
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC---Cce-eEEeeecCCcCCCCChhhHHHHHHHH
Q 019899 211 QRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSES---SAG-LYCWADMSGLIPSYSEKGELELWDKL 285 (334)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~---~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (334)
...+...+.. +..+.+.+..++..++++++.+.|++. ++++..+ ..+ ..+.+++.+.... ..+..++...
T Consensus 322 ~~~~~~~l~~--~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~--~~~~~~l~~~- 396 (450)
T d1pmma_ 322 VIAQYYEFLR--LGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDP--GYTLYDLSER- 396 (450)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCC--SSCHHHHHHH-
T ss_pred HHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccC--CCCHHHHHHH-
Confidence 1112222221 224556788888999999999999998 5666522 222 2334555432111 1233466666
Q ss_pred HHhcCeEEcCCCCcCC--CCCCeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 286 LNIAKINVTPGSACHC--IEPGWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 286 l~~~gi~v~~g~~~~~--~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
|.++|..+.. ....+ .....+|+.+.. .++++++.+++.|+++++++
T Consensus 397 L~~~Gw~v~~-~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l 446 (450)
T d1pmma_ 397 LRLRGWQVPA-FTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYL 446 (450)
T ss_dssp HHTTTCBCCE-EECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeeec-cCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 6668865531 11111 123479999885 68999999999999998764
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.81 E-value=7.7e-19 Score=158.91 Aligned_cols=312 Identities=10% Similarity=-0.023 Sum_probs=170.2
Q ss_pred hhhcCCCCCCCCcEEE-ecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEE--eCCCCCC-cc----
Q 019899 7 QVLGQAVSFDPSQIVL-TAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPV--HCRSTDN-FA---- 78 (334)
Q Consensus 7 ~~~~~~~~~~~~~i~~-~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v--~~~~~~~-~~---- 78 (334)
+.+++.++ +++.++ ++|+++++.+++.+++++||+|+++..+|.+....+....+..++.. ++++... ..
T Consensus 73 ~~~A~~~g--a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~ 150 (462)
T d1c4ka2 73 KHAARVYN--ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDS 150 (462)
T ss_dssp HHHHHHTT--CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGG
T ss_pred HHHHHHhC--CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeecccccccccCCCChH
Confidence 34444454 355544 56667788888999999999999999999998876552444444433 3321111 11
Q ss_pred -ccHHHHHHHHHH---HHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCC-cchhh
Q 019899 79 -FSITALDQAFNQ---ARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEE-FVSMA 153 (334)
Q Consensus 79 -~~~~~l~~~l~~---~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~-~~~~~ 153 (334)
++.+.+.+.+.. ......++..++++..+|..|.+.| +++|+++|+++|++|++|++|+........ ..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~ 227 (462)
T d1c4ka2 151 DFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSP 227 (462)
T ss_dssp GSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCT
T ss_pred HhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEechhhccccccCcCCcchh
Confidence 222222222110 0111224455666666677999999 999999999999999999999764322111 11111
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHH--------HHHHHH---hhcccCCChHHHHHHHHhhCChH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV--------LAAAKK---LTRFCSISAPTQRLLISMLSDTK 222 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~ 222 (334)
....+...+.+.++++.|+||++|.++. .+++...+..+ .+.+++ .....+++......+..+....+
T Consensus 228 ~~g~~~~~~~~~D~~~~S~HK~lg~~~~-g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~ 306 (462)
T d1c4ka2 228 LLIDDLGPEDPGIIVVQSVHKQQAGFSQ-TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQE 306 (462)
T ss_dssp TSCCCCCTTSCEEEEEECHHHHSSCCTT-CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHS
T ss_pred hccccccccCCccEEEEecCcccccccc-eEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHH
Confidence 1111111224568899999999975542 34444333221 122222 22222333333333332221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--C---------------------------C-----------CceeE-
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS--E---------------------------S-----------SAGLY- 261 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--~---------------------------~-----------~~g~~- 261 (334)
.....+..++..++.+++++.+.+.+.... . + ...+.
T Consensus 307 --~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (462)
T d1c4ka2 307 --GEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYV 384 (462)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEE
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCccceec
Confidence 222345556666777788888776521100 0 0 00000
Q ss_pred ----EeeecCCcCCC-----CChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHH
Q 019899 262 ----CWADMSGLIPS-----YSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 262 ----~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~ 331 (334)
+.+..+..... .....+.++... |+++||.+.-. ..+.+|++++. .|++++++++++|+++.+
T Consensus 385 Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~-L~~~gI~~e~~------~~~~i~~~~s~~~T~edid~li~aL~ei~r 457 (462)
T d1c4ka2 385 DPNKFMLTTPGINPETGDYEDFGVPATIVANY-LRDHGIIPEKS------DLNSILFLMTPAETPAKMNNLITQLLQLQR 457 (462)
T ss_dssp CTTEEEEECSSEETTTTEECSSCCCHHHHHHH-HHHTTCCCSEE------CSSEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccceeEEecCCccccccchhhcCCcHHHHHHH-HHHcCCeeecc------CCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 11222221000 011234455555 67799865321 24679999985 699999999999999877
Q ss_pred Hc
Q 019899 332 TC 333 (334)
Q Consensus 332 ~~ 333 (334)
.+
T Consensus 458 ~~ 459 (462)
T d1c4ka2 458 LI 459 (462)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.80 E-value=3.2e-17 Score=142.80 Aligned_cols=267 Identities=15% Similarity=0.137 Sum_probs=182.5
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..++++++..|+..++.+++++||.|++++..|.+....+. ...|.++..++. .|.+++++++++
T Consensus 74 ~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~-------~d~~~~~~~i~~--- 143 (394)
T d1e5ea_ 74 TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINT-------AIPGEVKKHMKP--- 143 (394)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-------TSTTHHHHHCCT---
T ss_pred CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCC-------CCHHHHHHhhcc---
Confidence 5678999999999999999999999999999999987665544 147899999884 356789998886
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHH-hcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAR-EKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGL 172 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~-~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 172 (334)
++++|++..|.||+..+.| ++++++.++ ++|+++++|..+.. +....++. .+.+++++|.
T Consensus 144 ---~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~at-------P~~~~Pl~------~GaDiVvhS~ 204 (394)
T d1e5ea_ 144 ---NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCS-------PMITNPVD------FGVDVVVHSA 204 (394)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTC-------TTTCCGGG------GTCSEEEEET
T ss_pred ---cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccC-------cccCCchh------cCCCEEEech
Confidence 8999999999999999999 888887665 57899999999763 22222221 5778999999
Q ss_pred cccCCCC-CceEEEEeecCHHHHHHHHH--hhcc--cCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 173 SKDLSLP-GFRTGVIYSYNESVLAAAKK--LTRF--CSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLK 247 (334)
Q Consensus 173 sK~~~~~-g~r~g~i~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (334)
+|.++.. ..=.|.+++ +.+.....+. .+.. ...++...+.+..-++.. .-+.++..+++..+.+.|+
T Consensus 205 TKy~~GhsDv~~G~v~~-~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL-------~lRm~r~~~nA~~lA~~L~ 276 (394)
T d1e5ea_ 205 TKYINGHTDVVAGLICG-KADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL-------NIRMKAESENAMKVAEYLK 276 (394)
T ss_dssp TTTTTCSSCCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCcccccccccc-hhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhH-------HHHHHHHHHHHHHHHHHHh
Confidence 9999534 355566666 6776655543 2222 245666666666666664 3455667788888888898
Q ss_pred hCC-Cc-cc-----------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEE---cCCCCcC----C
Q 019899 248 QLG-IR-CS-----------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINV---TPGSACH----C 301 (334)
Q Consensus 248 ~~g-~~-~~-----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v---~~g~~~~----~ 301 (334)
++. ++ +. ...++++. +.+... .+-+.++++...+.- .-|.... +
T Consensus 277 ~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~s-f~~~~~---------~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p 346 (394)
T d1e5ea_ 277 SHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMIT-FILKSG---------FEGAKKLLDNLKLITLAVSLGGCESLIQHP 346 (394)
T ss_dssp TCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEE-EEETTH---------HHHHHHHHHTCSSSEESSCCCSSSCEEECG
T ss_pred hcCCccEEeCCCcccccchhhhhcccccCCCeee-eeccCC---------HHHHHHHHHhCCccceeeccCCccceeECc
Confidence 872 21 11 11234433 444321 233444455444321 1122110 0
Q ss_pred -----------------CCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 302 -----------------IEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 302 -----------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
..++.+|+|++ -|+.+++++.|.+++++.
T Consensus 347 ~~~th~~~~~~~r~~~Gi~~~liRlSVG---lEd~eDLi~Dl~qAl~~l 392 (394)
T d1e5ea_ 347 ASMTHAVVPKEEREAAGITDGMIRLSVG---IEDADELIADFKQGLDAL 392 (394)
T ss_dssp GGTTTTTSCHHHHHHTTCCTTEEEEECC---SSCHHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCcCEEEEEec---cCCHHHHHHHHHHHHHHh
Confidence 02357999999 688888888888888763
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.5e-17 Score=143.30 Aligned_cols=269 Identities=12% Similarity=0.083 Sum_probs=178.5
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..++++++..|+..++ .++.+||+|++....|++....+.. ..|.++..++ .+.+++++++++
T Consensus 70 ~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~--------~~~~~~~~~i~~--- 137 (393)
T d1n8pa_ 70 AQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN--------DLLNDLPQLIKE--- 137 (393)
T ss_dssp CSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES--------SHHHHHHHHSCS---
T ss_pred CceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee--------cchHHHHHHhhh---
Confidence 567888999999987554 6678899999999999987776652 3566665554 245778888876
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHH----hcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEE
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAR----EKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHII 169 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~----~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (334)
++++|++.+|.||+..+.| +++++++|+ ++|+++++|+.+.. +....++. .+.++++
T Consensus 138 ---~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~at-------P~~~~Pl~------~GADiVv 198 (393)
T d1n8pa_ 138 ---NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLS-------PYISNPLN------FGADIVV 198 (393)
T ss_dssp ---SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTH-------HHHCCGGG------GTCSEEE
T ss_pred ---hcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccC-------cccCCchh------hCCCEEE
Confidence 8999999999999999999 888888887 78999999999853 22222232 6778999
Q ss_pred ecccccCCCC-CceEEEEeecCHHHHHHHHHhhccc--CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019899 170 YGLSKDLSLP-GFRTGVIYSYNESVLAAAKKLTRFC--SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGL 246 (334)
Q Consensus 170 ~s~sK~~~~~-g~r~g~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (334)
+|++|.++.. ..=.|.++..++.+.+.++.....+ ..++.....+..-++.. .-+.++..+++..+.+.|
T Consensus 199 hS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl-------~lR~~~~~~nA~~lA~~L 271 (393)
T d1n8pa_ 199 HSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTL-------HLRVRQAALSANKIAEFL 271 (393)
T ss_dssp EETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHH
T ss_pred EccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcch-------hhHHHHHHHHHHHHHHHH
Confidence 9999999433 4556777766777888887655443 35666666666666653 334456667777788888
Q ss_pred HhC-C-Cccc-------------------CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC-----
Q 019899 247 KQL-G-IRCS-------------------ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH----- 300 (334)
Q Consensus 247 ~~~-g-~~~~-------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----- 300 (334)
+.. . ++.+ ...+|..+.+++... .+....+.+. ++-..+...-|....
T Consensus 272 ~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~-----~~~~~~f~~~-l~l~~~~~SlGg~~SLi~~p 345 (393)
T d1n8pa_ 272 AADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-----AEAASKFASS-TRLFTLAESLGGIESLLEVP 345 (393)
T ss_dssp TSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-----HHHHHHHHHH-CSSSEECSCCCCSSCEEECT
T ss_pred HhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCC-----HHHHHHHHHh-CCcceecccCCCcCceEeCc
Confidence 653 1 2111 012244555666532 1112233333 221121122222110
Q ss_pred -----C-----------CCCCeEEEEecCCCcccHHHHHHHHHHHHHH
Q 019899 301 -----C-----------IEPGWFRCCFTSLTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 301 -----~-----------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~ 332 (334)
. ..++.+|+|++ .|+.+++++.|.+++++
T Consensus 346 ~~~~h~~~~~~~r~~~gi~~~liRlSvG---lE~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 346 AVMTHGGIPKEAREASGVFDDLVRISVG---IEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp TTTTSCSSCTTTTTTTSCCTTEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred hhhccccCCHHHHHhcCCCcCEEEEEec---cCCHHHHHHHHHHHHHH
Confidence 0 02357999999 68888899999988875
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.79 E-value=4.3e-18 Score=154.11 Aligned_cols=304 Identities=13% Similarity=0.124 Sum_probs=184.1
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCe-------EEecCCCCCChhhhhhhccCcEEEEEeC--------CCCCCccccH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNA-------LLVPSPYYPGFDRDIRFRTGVELIPVHC--------RSTDNFAFSI 81 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~-------vl~~~p~~~~~~~~~~~~~g~~v~~v~~--------~~~~~~~~~~ 81 (334)
.+.+++++++++|+++++..++++|++ ++...+.+..+..... ..|..++.++. ..+..+.+|+
T Consensus 90 ~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 168 (465)
T d1ax4a_ 90 YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-LNGCKAINIVTEKAFDSETYDDWKGDFDI 168 (465)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-HTTCEEEECBCGGGGCTTSCCTTTTCBCH
T ss_pred CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH-HcCCeeecccccccCCCCCCCCccCccCH
Confidence 578999999999999999998765543 4445544444444555 67877776643 1234567899
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCcEEEEecccccccc-------CCCCcchhh
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPV-GNIIPRETLYELLDFAREKNIHVISDEIYGGSIF-------GNEEFVSMA 153 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~-------~~~~~~~~~ 153 (334)
+.++++|++... ..+.++++..++|.. |.++|.++++++.++|++||+++++|+++..... .+....+..
T Consensus 169 ~~l~~~i~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (465)
T d1ax4a_ 169 KKLKENIAQHGA--DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK 246 (465)
T ss_dssp HHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHH
T ss_pred HHHHHHHHhhcc--ccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchh
Confidence 999999987522 145556666556654 4678999999999999999999999999753210 000011122
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHH-HHHHHHHh----hc---ccCCChHHHHHHHHhhCChHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNES-VLAAAKKL----TR---FCSISAPTQRLLISMLSDTKFIQ 225 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~-~~~~~~~~----~~---~~~~~~~~~~~~~~~l~~~~~~~ 225 (334)
...++ +..-.+++..|.+|..+ +.+.|+++.++.. +....... .. ..+.......++...+...
T Consensus 247 ~i~~~--~~~~~d~~s~s~~k~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~---- 318 (465)
T d1ax4a_ 247 EVIFD--MYKYADALTMSAKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG---- 318 (465)
T ss_dssp HHHHH--HGGGCSEEEEETTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT----
T ss_pred hhccc--cccccceeEeecccCcc--cccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHh----
Confidence 11111 00112344456666654 4456888874432 22222211 11 1122223333333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCC--CChhhHHHHHHHHHHhcCeEEcCCCCc----
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPS--YSEKGELELWDKLLNIAKINVTPGSAC---- 299 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~~---- 299 (334)
......++..++.+++.+.|++.++++..+.+++.++++....... ............++.+.||...+....
T Consensus 319 -~~~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~ 397 (465)
T d1ax4a_ 319 -TEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR 397 (465)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB
T ss_pred -hhHHHHHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceecccccccccc
Confidence 1122334455667889999999999988888887777766544332 222334566777788899875432211
Q ss_pred ----CC---CCCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 300 ----HC---IEPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 300 ----~~---~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
+. ...+.+|++++. .|++|++.+++.|+++.++
T Consensus 398 ~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~ 439 (465)
T d1ax4a_ 398 DPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 439 (465)
T ss_dssp CTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred ccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 123579999762 4899999999999998865
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=2.5e-17 Score=144.08 Aligned_cols=268 Identities=16% Similarity=0.137 Sum_probs=175.4
Q ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---RTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
.+..++++++.+|+..++.+++++||+|+++...|++....+.. ..|.++..++.. -+.+..++.+++
T Consensus 73 ~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~------~~~~~~~~~~~~--- 143 (421)
T d2ctza1 73 GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE------ERPEEFLALTDE--- 143 (421)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT------CCHHHHHHHCCT---
T ss_pred CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccc------cCcchhccccCC---
Confidence 46799999999999999999999999999999999887776551 378888887631 123455555554
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|++.+|.||+..+.| +++|+++|+++|+++++|+.++. .+....++. .+.+++++|.+
T Consensus 144 ---~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~------tP~~~~Pl~------~GaDiVvhS~T 205 (421)
T d2ctza1 144 ---KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGM------GGYLLRPLA------WGAALVTHSLT 205 (421)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGG------GGTSCCGGG------GTCSEEEEETT
T ss_pred ---CceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccc------cceeccccc------cCCcEEEEech
Confidence 8999999999999999999 99999999999999999999852 111122221 67889999999
Q ss_pred ccCCCCC-ceEEEEeecCHH---------------------H---------HHHHHH-h-h-cccCCChHHHHHHHHhhC
Q 019899 174 KDLSLPG-FRTGVIYSYNES---------------------V---------LAAAKK-L-T-RFCSISAPTQRLLISMLS 219 (334)
Q Consensus 174 K~~~~~g-~r~g~i~~~~~~---------------------~---------~~~~~~-~-~-~~~~~~~~~~~~~~~~l~ 219 (334)
|.++..+ .=.|.++..+.. + ....+. . + .....++.....+..-++
T Consensus 206 Kyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~ 285 (421)
T d2ctza1 206 KWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME 285 (421)
T ss_dssp TTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT
T ss_pred hhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCc
Confidence 9996444 334555542210 1 111111 0 1 123456666666666666
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cc-c--c---------------CCCceeEEeeecCCcCCCCChhhHHH
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQLG-IR-C--S---------------ESSAGLYCWADMSGLIPSYSEKGELE 280 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~-~--~---------------~~~~g~~~~~~~~~~~~~~~~~~~~~ 280 (334)
.. .-+.++..+++..+.+.|+++. ++ + . ....|.++.+++... .+
T Consensus 286 TL-------~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~---------~~ 349 (421)
T d2ctza1 286 TL-------SLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGG---------YE 349 (421)
T ss_dssp TH-------HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTH---------HH
T ss_pred ch-------hhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCC---------HH
Confidence 53 3445667788888888888862 21 1 1 111243455666431 23
Q ss_pred HHHHHHHhcCe---EEcCCCCc----CC-----------------CCCCeEEEEecCCCcccHHHHHHHHHHHH
Q 019899 281 LWDKLLNIAKI---NVTPGSAC----HC-----------------IEPGWFRCCFTSLTHEDIPLVIERIQKVA 330 (334)
Q Consensus 281 ~~~~ll~~~gi---~v~~g~~~----~~-----------------~~~~~iRi~~~~~~~~~l~~~l~~l~~~~ 330 (334)
.+.++++.-.+ ...-|... ++ ..++.+|+|++ -|+.+++++.|.+++
T Consensus 350 ~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSvG---lEd~eDLi~DL~qAL 420 (421)
T d2ctza1 350 AAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG---LEHVEDLKAELKEAL 420 (421)
T ss_dssp HHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC---SSCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEec---cCCHHHHHHHHHHhc
Confidence 34443444333 12212211 00 12467999999 778888888888875
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.79 E-value=4.4e-17 Score=142.57 Aligned_cols=278 Identities=14% Similarity=0.090 Sum_probs=189.1
Q ss_pred CcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhhhh---------ccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 25 GATPAVEILCFCLADHGNALLVPSPYYPGFDRDIRF---------RTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 25 g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~---------~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
+++.|+.+++.++++|||+|+..+...+++...-.. ....+.+.+++++ +.+.+|.+++++..+..
T Consensus 105 SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~-~~~~IDyd~l~~~a~~~---- 179 (470)
T d1rv3a_ 105 SGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNP-DTGYIDYDRLEENARLF---- 179 (470)
T ss_dssp SHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHH----
T ss_pred CCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEec-ccCcccHHHHHHHHHhh----
Confidence 567799999999999999999988766655443210 0125677888764 44689999999999987
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccccc
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKD 175 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~ 175 (334)
+|++|++....+| ..+| .+++.++|.+.|.++++|-+|......+..+++-.+ . .+++.+|.+|+
T Consensus 180 -kPklIi~G~S~y~--r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~--------~-aDvvt~tTHKt 244 (470)
T d1rv3a_ 180 -HPKLIIAGTSCYS--RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--------H-CHVVTTTTHKT 244 (470)
T ss_dssp -CCSEEEECCSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--------T-CSEEEEESSGG
T ss_pred -CcceEeechhhcc--ccCC---HHHHHHHHhccCCeEEecchhhhhhccccccCChhh--------e-eeeeeeehhhh
Confidence 9997777766665 4667 888888899999999999998543221222222211 2 35788899999
Q ss_pred CCCCCceEEEEeecCH--------------HHHHHHHHhhccc-CCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 019899 176 LSLPGFRTGVIYSYNE--------------SVLAAAKKLTRFC-SISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYD 240 (334)
Q Consensus 176 ~~~~g~r~g~i~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (334)
+ +|.|.|.|.++++ ++.+.+.+...++ ..++.....++.+....+.....+.++.+++.++++
T Consensus 245 l--rGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk 322 (470)
T d1rv3a_ 245 L--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCR 322 (470)
T ss_dssp G--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred c--cCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 9 6778899998542 4666676544332 233333333333332222223345788899999999
Q ss_pred HHHHHHHhCCCccc-CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEc----CCCCcCCCCCCeEEEEecC--
Q 019899 241 SFVAGLKQLGIRCS-ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVT----PGSACHCIEPGWFRCCFTS-- 313 (334)
Q Consensus 241 ~~~~~l~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~~~~~~~iRi~~~~-- 313 (334)
.|.+.|.+.|+++. ....+..+++++..... +. ..+..+|++.||.+. |+.. .+..++.+||+...
T Consensus 323 ~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~-----~g-~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~alT 395 (470)
T d1rv3a_ 323 ALSAALVELGYKIVTGGSDNHLILVDLRSKGT-----DG-GRAEKVLEACSIACNKNTCPGDK-SALRPSGLRLGTPALT 395 (470)
T ss_dssp HHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTC-----CH-HHHHHHHHHTTEECEEECCSSCS-CTTSCCEEEEECHHHH
T ss_pred HHHHHHHhCCceeccCCCCCceEEEeecccCC-----cH-HHHHHHHHHcCcEECCCcCCCCC-CCCCCCeeEecCHHHH
Confidence 99999999999976 44556677788754311 22 445555888999765 4442 22235789999753
Q ss_pred ---CCcccHHHHHHHHHHHHH
Q 019899 314 ---LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 314 ---~~~~~l~~~l~~l~~~~~ 331 (334)
..++|++++.+.+.++++
T Consensus 396 trG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 396 SRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHH
Confidence 467888888888887764
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.78 E-value=9.6e-18 Score=146.27 Aligned_cols=288 Identities=14% Similarity=0.141 Sum_probs=183.5
Q ss_pred CCCCCCC----cEEEecCcHHHHHHHHHHhcCCCCeEEecCCCCCChhhhh--------hhccC--cEEEEEeCCCCCCc
Q 019899 12 AVSFDPS----QIVLTAGATPAVEILCFCLADHGNALLVPSPYYPGFDRDI--------RFRTG--VELIPVHCRSTDNF 77 (334)
Q Consensus 12 ~~~~~~~----~i~~~~g~~~~~~~~~~~l~~~gd~vl~~~p~~~~~~~~~--------~~~~g--~~v~~v~~~~~~~~ 77 (334)
.|+++.. +|-+.+ ++.|+.+++.+|++|||+|+..++.+.++...- . ..| .+...+++++ .+.
T Consensus 85 lF~~~~a~w~vNVqp~S-Gs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~-~~g~~~~~~~Y~~d~-~~~ 161 (463)
T d2a7va1 85 AFDLDPAQWGVNVQPYS-GSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRIS-ATSIFFESMPYKLNP-KTG 161 (463)
T ss_dssp HTTCCTTTEEEECCCSS-HHHHHHHHHHHHCCSCEECCC--------------------------------CCBCT-TTC
T ss_pred HhCCCchhccCCccccc-cHHHHHHHHHHHcCCCceEEeeccCcCccccccccccccccc-ceeeEeeeeeeeccC-CCC
Confidence 3555554 344444 566899999999999999998887766654321 1 122 2344455432 446
Q ss_pred cccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhh
Q 019899 78 AFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILE 157 (334)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~ 157 (334)
.+|.+++++..++. +|++|++....+| ..+| .+++.++|++.|.++++|-+|......+..+++-.+
T Consensus 162 ~IDyd~~~~~a~~~-----kPklIi~G~S~y~--r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~--- 228 (463)
T d2a7va1 162 LIDYNQLALTARLF-----RPRLIIAGTSAYA--RLID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--- 228 (463)
T ss_dssp SBCHHHHHHHHHHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG---
T ss_pred cCcHHHHHHHHhhc-----CCceEEecccccc--cccC---HHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh---
Confidence 79999999999987 9997777766665 4567 888888889999999999998553322222222221
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCH--------------HHHHHHHHhhccc-CCChHHHHHHHHhhCChH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNE--------------SVLAAAKKLTRFC-SISAPTQRLLISMLSDTK 222 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 222 (334)
. .+++.+|.+|++ +|.|.|.|+++++ ++.+.+.+.-.++ ..+++....++.+....+
T Consensus 229 -----~-aDvvt~tTHKTl--rGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~e 300 (463)
T d2a7va1 229 -----H-ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ 300 (463)
T ss_dssp -----T-CSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH
T ss_pred -----h-hhhhhchhhhhh--cCCCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHH
Confidence 2 357788999999 7778899998542 5666666543332 233333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCceeEEeeecCCc-CCCCChhhHHHHHHHHHHhcCeEEc----CC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCS-ESSAGLYCWADMSGL-IPSYSEKGELELWDKLLNIAKINVT----PG 296 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~gi~v~----~g 296 (334)
.+.....++.+++.++++.|.+.|.+.|+++. ....+..+++++.+. ++ . ..+...|++.||.+. |+
T Consensus 301 a~~~~fk~Ya~qVv~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~------G-~~ae~~Le~~gI~~Nkn~iP~ 373 (463)
T d2a7va1 301 ACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLD------G-ARAERVLELVSITANKNTCPG 373 (463)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCC------H-HHHHHHHHHTTEECEEECCTT
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCceeeeeccccCCC------H-HHHHHHHHhccCccCCccCCC
Confidence 33455678899999999999999999999986 445566777888543 33 2 445555888999865 44
Q ss_pred CCcCCCCCCeEEEEecC-----CCcccHHHHHHHHHHHHH
Q 019899 297 SACHCIEPGWFRCCFTS-----LTHEDIPLVIERIQKVAE 331 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~~-----~~~~~l~~~l~~l~~~~~ 331 (334)
.. .+-.++.|||+... ..++|++++.+.+.+++.
T Consensus 374 D~-~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 374 DR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp CC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CC-CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 32 12235679999753 467888888888877764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1e-17 Score=149.40 Aligned_cols=300 Identities=14% Similarity=0.045 Sum_probs=175.6
Q ss_pred CCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC-------------cEEEEEeCC--CCCCccc
Q 019899 17 PSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG-------------VELIPVHCR--STDNFAF 79 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~~v~~~--~~~~~~~ 79 (334)
.+.+++++++++|+..++.... ....+|+....+|.+......-..| ......+.+ ..+....
T Consensus 101 ~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (425)
T d1sffa_ 101 AKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISED 180 (425)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHH
T ss_pred cceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccch
Confidence 4579999999999999977652 3456788888877764443220222 111222221 1111111
Q ss_pred cHHHHHHHHHHHHHcCCceeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc-hhhhhhh
Q 019899 80 SITALDQAFNQARKRGVKVRGILICNPANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-SMAEILE 157 (334)
Q Consensus 80 ~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~-~~~~~~~ 157 (334)
........+........++.++++..-+...|. ..|.+.++.|.++|++||+++|+||++.++...|..+. ....+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~- 259 (425)
T d1sffa_ 181 DAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVA- 259 (425)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSC-
T ss_pred hhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCC-
Confidence 111111122222222234554554433555666 45777899999999999999999999998654444322 222221
Q ss_pred ccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 158 AEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 158 ~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
+| +.+++|.++ .|+++|.+++ ++++.+.+... ..+++.++++..++.+.|+..+. ++..++....-
T Consensus 260 -----PD----i~~~gK~l~-gG~P~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~~~~~~~~~g 327 (425)
T d1sffa_ 260 -----PD----LTTFAKSIA-GGFPLAGVTG-RAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-ENLLQKANDLG 327 (425)
T ss_dssp -----CS----EEEECGGGG-TSSCCEEEEE-EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred -----cc----ceecccccC-CCcceEEEEE-cHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hhhhhhhhhhh
Confidence 22 345899998 7899999998 78887766533 34577888888888888764321 11122222222
Q ss_pred HHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcC--CCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC
Q 019899 236 KKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLI--PSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS 313 (334)
Q Consensus 236 ~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~ 313 (334)
....+.+.+.+++.++.......|.+..+.+.... ......-...+...+++ +||.+.++.. ..+.+|++.+.
T Consensus 328 ~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~g~----~~n~i~~~PpL 402 (425)
T d1sffa_ 328 QKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGP----YYNVLRILVPL 402 (425)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEEST----TSCEEEECCCT
T ss_pred hhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHH-CCCEEeccCC----CCCEEEEECCC
Confidence 33333333444444442222223444455553321 11122333467777555 8999877442 24679998764
Q ss_pred -CCcccHHHHHHHHHHHHHHcC
Q 019899 314 -LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 314 -~~~~~l~~~l~~l~~~~~~~~ 334 (334)
++++||+++++++.+++++.+
T Consensus 403 ~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 403 TIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999998754
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.77 E-value=3.6e-17 Score=144.06 Aligned_cols=288 Identities=13% Similarity=0.176 Sum_probs=185.8
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHH
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITA 83 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~ 83 (334)
+.+++++.++ ...++.++++|.|+.+++.++ +++||+|++|..+|.+....+. ..|.+++.++++ ++.+.+|++.
T Consensus 39 fE~~~a~~~g--~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~-~~g~~p~~~d~~-~~~~~~d~~~ 114 (384)
T d1b9ha_ 39 FEREFAAHHG--AAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQ-RLGAVTVPVDVD-AATYNLDPEA 114 (384)
T ss_dssp HHHHHHHHTT--CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-HTTCEEEEECBC-TTTCCBCHHH
T ss_pred HHHHHHHHHC--cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccccccc-cccccccccccc-ccccccchhh
Confidence 3444554443 557999999999999999998 6899999999999999999988 999999999985 3567899999
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccC
Q 019899 84 LDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 84 l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (334)
+++.++. ++++|+++ +..|...+ +.++.++|+++++++|+|.+++.+. +.|.. ....
T Consensus 115 ~~~~i~~------~tk~i~~~---~~~g~~~d---~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~---~g~~------- 172 (384)
T d1b9ha_ 115 VAAAVTP------RTKVIMPV---HMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARWQGKR---VGEL------- 172 (384)
T ss_dssp HHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTEE---GGGS-------
T ss_pred hcccccc------cccccccc---cccccccc---cccchhhhhhhhhhhhhhhceecccccCCEe---cCcc-------
Confidence 9998876 88887654 66777788 8899999999999999999997644 22221 1111
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhcc-------------------cCCChHHHHHHHHhhCChHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTRF-------------------CSISAPTQRLLISMLSDTKF 223 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~ 223 (334)
.+..++-.+.+|.++ .| ..|++++.++++.+.++..... +..+.+....+..-|+.
T Consensus 173 g~~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~--- 247 (384)
T d1b9ha_ 173 DSIATFSFQNGKLMT-AG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLAR--- 247 (384)
T ss_dssp SSCEEEECCTTSSSC-SS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTT---
T ss_pred cccceeccccccccc-cc-ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhh---
Confidence 233344445578885 33 3688887788887777654321 11222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC----C-Cc-eeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 224 IQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSE----S-SA-GLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~----~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
++++ .++-+++.+++.+.|.+. ++.... . .. .++..+.++... .....++.+. |+++||.+.+.
T Consensus 248 ld~~----~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Rd~l~~~-L~~~GI~~~~~ 318 (384)
T d1b9ha_ 248 LDEQ----IAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERRNALVDR-LVEAGLPAFAA 318 (384)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHHHHHHHH-HHHTTCCEEEC
T ss_pred cccc----hhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccc----cccHHHHHHH-HHHCCCCeeee
Confidence 2333 333445566777777765 443221 1 11 222333443221 1234567888 56689987653
Q ss_pred CC----------cCCCC-----------------CCeEEEEecC-CCc-ccHHHHHHHHHHHHHH
Q 019899 297 SA----------CHCIE-----------------PGWFRCCFTS-LTH-EDIPLVIERIQKVAET 332 (334)
Q Consensus 297 ~~----------~~~~~-----------------~~~iRi~~~~-~~~-~~l~~~l~~l~~~~~~ 332 (334)
.. ++... +..+.+-+.. +++ +|++..++.|++++++
T Consensus 319 y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 319 FRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp CCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 21 01000 0236666553 564 6999999999999876
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.5e-16 Score=143.84 Aligned_cols=313 Identities=14% Similarity=0.119 Sum_probs=182.2
Q ss_pred hhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhcCCCCeEEe---------cCCCCCChhhhhhhccCcEEEEEeCCCC-
Q 019899 5 MSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLADHGNALLV---------PSPYYPGFDRDIRFRTGVELIPVHCRST- 74 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~~~gd~vl~---------~~p~~~~~~~~~~~~~g~~v~~v~~~~~- 74 (334)
+.+++++.++ .+.+++++++++|+.+++.+++++||.++. ....|........ ..|..++.++.+..
T Consensus 79 le~~~a~l~G--~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~ 155 (467)
T d2v1pa1 79 LAESVKNIFG--YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ-INGCTVRNVYIKEAF 155 (467)
T ss_dssp HHHHHHHHTC--CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHH-HTTCEEEECBCTTTT
T ss_pred HHHHHHHHHC--CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHH-HcCCeeeeccccccc
Confidence 3344444443 567899999999999999998876654433 3333333444455 78999988876321
Q ss_pred -------CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCC-CcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc---
Q 019899 75 -------DNFAFSITALDQAFNQARKRGVKVRGILICNPAN-PVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI--- 143 (334)
Q Consensus 75 -------~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~n-ptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~--- 143 (334)
....+|++++++.+++... ..+.++++...+| ..|.+++.+++++|.++|++||+++++|+++....
T Consensus 156 ~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~ 233 (467)
T d2v1pa1 156 DTGVRYDFKGNFDLEGLERGIEEVGP--NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYF 233 (467)
T ss_dssp CTTSCCTTTTCBCHHHHHHHHHHHCG--GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHhhcCc--cccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccc
Confidence 1346899999999987522 1456677777766 45788899999999999999999999999964211
Q ss_pred ----cCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHhhc-------c---cCCChH
Q 019899 144 ----FGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKLTR-------F---CSISAP 209 (334)
Q Consensus 144 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~~~-------~---~~~~~~ 209 (334)
..+....++...... +-....++..|.+|.++.+ ..|++..+++.+....+.... . .+.+..
T Consensus 234 ~~~~~~~~~~~~~~~i~~~--~~~~~d~~s~s~~K~~~~~--~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (467)
T d2v1pa1 234 IKQREAEYKDWTIEQITRE--TYKYADMLAMSAKKDAMVP--MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGG 309 (467)
T ss_dssp HHHHCGGGTTSCHHHHHHH--HGGGCSEEEEESSSTTCCS--SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHH
T ss_pred cccccccccCCcccccchh--hcccCCEEEecCCCCCCCC--CceeEEecchhhhhHHHhhcccccccccCcchhhhHHH
Confidence 000011111111110 0023345556888888533 457777755544333322111 1 122222
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCC--cCCCCChhhHHHHHHHHHH
Q 019899 210 TQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSG--LIPSYSEKGELELWDKLLN 287 (334)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~ll~ 287 (334)
...++...+.... ..+..++..++.+++.+.|++.+..+......... ++... +...............++.
T Consensus 310 ~~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~ 383 (467)
T d2v1pa1 310 AMERLAVGLYDGM-----NLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAF-VDAGKLLPHIPADQFPAQALACELYK 383 (467)
T ss_dssp HHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSCEE-EEHHHHSTTSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhh-----hHHHHHHHHHHHHHHHHHHHhcCCcccCCCcccee-ecchhhcCCcchhhhhhHHHHHHHHH
Confidence 3333332222111 12233444567788999998887765543333222 12111 1111122334556777788
Q ss_pred hcCeEEcCCCC--------cC---CCCCCeEEEEecC--CCcccHHHHHHHHHHHHHH
Q 019899 288 IAKINVTPGSA--------CH---CIEPGWFRCCFTS--LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 288 ~~gi~v~~g~~--------~~---~~~~~~iRi~~~~--~~~~~l~~~l~~l~~~~~~ 332 (334)
+.||....... .+ +...+.+|++++. .|++++|++++.|+++.++
T Consensus 384 ~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 384 VAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp HHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 88986432111 01 1124679999763 4899999999999999864
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.1e-16 Score=141.48 Aligned_cols=277 Identities=15% Similarity=0.126 Sum_probs=179.9
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc----------CCCCeEEecCCCCCChhhhhhhcc------------CcEEEEEeCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA----------DHGNALLVPSPYYPGFDRDIRFRT------------GVELIPVHCRS 73 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~----------~~gd~vl~~~p~~~~~~~~~~~~~------------g~~v~~v~~~~ 73 (334)
..+.+++++++++|+..++.... ....+++....+|........... ...+..+|.
T Consensus 97 ~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-- 174 (404)
T d2byla1 97 NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-- 174 (404)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT--
T ss_pred cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc--
Confidence 35789999999999999987642 123466666666654322211011 122334442
Q ss_pred CCCccccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcch
Q 019899 74 TDNFAFSITALDQAFNQARKRGVKVRGILICNP-ANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVS 151 (334)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~ 151 (334)
.|++++++++.+ +++.+|++ .| ....|. ..|.+.++++.++|++||+++|+||++.+|...|..+..
T Consensus 175 -----~d~~~l~~~l~~-----~~iAavii-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~ 243 (404)
T d2byla1 175 -----NDLPALERALQD-----PNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV 243 (404)
T ss_dssp -----TCHHHHHHHHTS-----TTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred -----cCHHHHHHhcCC-----CCeEEEEE-CCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchh
Confidence 378899998865 36665655 55 666675 456778999999999999999999999887555543322
Q ss_pred hhhhhhccccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 152 MAEILEAEEVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
- .. +..+| +.+++|.++ .| +.+|.++. ++++.+.+... ..+++.++.+..++.+.++..+ +
T Consensus 244 ~-~~----gv~PD----i~~~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~--~--- 307 (404)
T d2byla1 244 D-YE----NVRPD----IVLLGKALS-GGLYPVSAVLC-DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLE--E--- 307 (404)
T ss_dssp G-GG----TCCCS----EEEECGGGG-TTSSCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH--H---
T ss_pred h-hc----CCCCC----EEEECchhh-CCCccceeeee-chhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHH--h---
Confidence 1 11 11122 237899998 66 79999998 88887766543 3456778888888888776432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccC--CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCe
Q 019899 229 ETNKRRIKKLYDSFVAGLKQLGIRCSE--SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGW 306 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~ 306 (334)
....++..++.+++.+.|.++.-+... ..-|++..+++..... ....++..++++ +|+.+.|.. .+.
T Consensus 308 ~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~----~~~~~~~~~l~~-~Gvl~~~~~------~~~ 376 (404)
T d2byla1 308 ENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD----WDAWKVCLRLRD-NGLLAKPTH------GDI 376 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSS----CCHHHHHHHHHH-TTEECEEEE------TTE
T ss_pred cCchhhhhHhhHHHHHHHHhhccccceeeeecccEEEEEEecCCc----hhHHHHHHHHHh-CCeEEecCC------CCE
Confidence 234445566667777777765222221 1124444455543322 134567888555 899987632 457
Q ss_pred EEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 307 FRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 307 iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+|++.+. +++++++++++++.++++.
T Consensus 377 i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 377 IRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 8998764 6999999999999999875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.73 E-value=9.7e-17 Score=142.89 Aligned_cols=282 Identities=13% Similarity=0.122 Sum_probs=167.8
Q ss_pred CCCcEEEecCcHHHHHHHHHHhc--CCCCeEEecCCCCCChhhhhhhccC-------------------cEEEEEeCCCC
Q 019899 16 DPSQIVLTAGATPAVEILCFCLA--DHGNALLVPSPYYPGFDRDIRFRTG-------------------VELIPVHCRST 74 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~~g-------------------~~v~~v~~~~~ 74 (334)
..+.+++++++++|+..++.... ....+|+....+|.+......-..| .+...++
T Consensus 107 ~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---- 182 (427)
T d2gsaa_ 107 SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP---- 182 (427)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC----
T ss_pred ccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC----
Confidence 35789999999999999988652 3556788888888764332210111 1112222
Q ss_pred CCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhh
Q 019899 75 DNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMA 153 (334)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~ 153 (334)
..|++.+++.+++. ..++.+|++..-....|.+. |.+.++++.++|++||+++|+||++.++ ..|..+ ...
T Consensus 183 ---~~~~~~le~~~~~~---~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~-~~~ 254 (427)
T d2gsaa_ 183 ---YNDLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGG-VQE 254 (427)
T ss_dssp ---TTCHHHHHHHHTTS---TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTC-HHH
T ss_pred ---cchHHHHHHHHHhC---CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccc-hHH
Confidence 34889999888752 23566555543355567654 6667999999999999999999999876 334322 211
Q ss_pred hhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-----hcccCCChHHHHHHHHhhCChHHHHHHH
Q 019899 154 EILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-----TRFCSISAPTQRLLISMLSDTKFIQEYL 228 (334)
Q Consensus 154 ~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 228 (334)
.. +. .+ ++ .+++|.+| .|+.+|.+++ ++++.+.+... ..+++.|+.+..++.+.++..+ +
T Consensus 255 ~~----gi-~P-Di--~~~gK~lg-gG~p~~a~~~-~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~--~--- 319 (427)
T d2gsaa_ 255 KF----GV-TP-DL--TTLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR--Q--- 319 (427)
T ss_dssp HT----TC-CC-SE--EEECGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT--S---
T ss_pred hc----CC-CH-HH--HhhhhccC-CCcceeeeee-hHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhh--h---
Confidence 11 11 12 22 34789997 7888999988 88888777542 2345678888887777664321 0
Q ss_pred HHHHHHHHHHHHHHHHHH----HhCCCccc-CCCceeEEeeec-CCcCCC------CChhhHHHHHHHHHHhcCeEEcCC
Q 019899 229 ETNKRRIKKLYDSFVAGL----KQLGIRCS-ESSAGLYCWADM-SGLIPS------YSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l----~~~g~~~~-~~~~g~~~~~~~-~~~~~~------~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
....++++++-+++.+.| ++.++... ...++++. +.+ ..+... ........+...+++ +||.+.|+
T Consensus 320 ~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~-i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~-~Gv~l~p~ 397 (427)
T d2gsaa_ 320 PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG-FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPS 397 (427)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEE-EESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSS
T ss_pred hhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEE-EEEeccCCCCHHHhhcccHHHHHHHHHHHHH-CCEEECCC
Confidence 112223333333333333 34444332 22334432 222 111111 011112345566555 79999875
Q ss_pred CCcCCCCCCeEEEEecCCCcccHHHHHHHHHHHHHHc
Q 019899 297 SACHCIEPGWFRCCFTSLTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~~~~~~~l~~~l~~l~~~~~~~ 333 (334)
.. ..+.+++. +|++||++++++++++++++
T Consensus 398 ~~------~~~~~~l~-~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 398 QF------EAGFTSLA-HTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp TT------SCEECCTT-CCHHHHHHHHHHHHHHHTCC
T ss_pred CC------cceeCCCC-CCHHHHHHHHHHHHHHHHhC
Confidence 42 11223433 79999999999999998763
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=5.7e-16 Score=137.70 Aligned_cols=288 Identities=11% Similarity=0.029 Sum_probs=178.5
Q ss_pred CCCCCCcEEEecCcHHHHHHHHHHhc-------CCCCeEEecCCCCCChhhhhhhccC-------------cEEEEEeCC
Q 019899 13 VSFDPSQIVLTAGATPAVEILCFCLA-------DHGNALLVPSPYYPGFDRDIRFRTG-------------VELIPVHCR 72 (334)
Q Consensus 13 ~~~~~~~i~~~~g~~~~~~~~~~~l~-------~~gd~vl~~~p~~~~~~~~~~~~~g-------------~~v~~v~~~ 72 (334)
.+.+.+.+++++++++|+..++.... .++.+|+....+|.+......-..+ ......|..
T Consensus 99 ~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
T d1s0aa_ 99 TPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAP 178 (429)
T ss_dssp SCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCC
T ss_pred hccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCcccccccccccc
Confidence 34456789999999999998876542 2345788888777654321110111 112222211
Q ss_pred -CCCCc---cccHHHHHHHHHHHHHcCCceeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCC
Q 019899 73 -STDNF---AFSITALDQAFNQARKRGVKVRGILICNP-ANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGN 146 (334)
Q Consensus 73 -~~~~~---~~~~~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~ 146 (334)
..... ..+++++++.+.. .+.++.++++... ++..|. ..|.+-+++|.++|++||+++|.||++.+|...|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~---~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG 255 (429)
T d1s0aa_ 179 QSRMDGEWDERDMVGFARLMAA---HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255 (429)
T ss_dssp CSBC-CCCCGGGGHHHHHHHHH---HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred ccccccccchhhhhhhhhhhhh---cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccc
Confidence 11112 2344555544443 3456776665533 355565 5688899999999999999999999999875555
Q ss_pred CCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh-------hcccCCChHHHHHHHHhhC
Q 019899 147 EEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL-------TRFCSISAPTQRLLISMLS 219 (334)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~ 219 (334)
..+.. ... +. .. + +.+++|.++..+..+|.+++ ++++.+.+... ..+++.++.+..++.+.++
T Consensus 256 ~~~~~-~~~----~v-~P-D--i~~~gK~l~gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~ 325 (429)
T d1s0aa_ 256 KLFAC-EHA----EI-AP-D--ILCLGKALTGGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA 325 (429)
T ss_dssp SSSGG-GGG----TC-CC-S--EEEECGGGGTSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred ccccc-ccc----ee-cc-c--ccccccccccccccccchhh-HHHHHhccCCCCCcceeecCCCCCCcccchhhhcccc
Confidence 43321 111 11 11 2 23578999734489999998 88998887642 3456778888888888775
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc--CCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCC
Q 019899 220 DTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCS--ESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPG 296 (334)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 296 (334)
..+ + .+..++..+.-+++.+.|+++ ..... ....|++..+++..+.. ...+...+++ +|+.+.|.
T Consensus 326 ~i~--~---~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~~------~~~~~~~~~~-~Gl~~~~~ 393 (429)
T d1s0aa_ 326 ILE--S---GDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN------MAALQKFFVE-QGVWIRPF 393 (429)
T ss_dssp HHH--T---CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBC------HHHHHHHHHH-TTEECCCB
T ss_pred ccc--c---ccccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCccc------HHHHHHHHHH-CCcEEEec
Confidence 432 1 233445555566666777554 11111 11234555567665432 3567777555 79998763
Q ss_pred CCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 297 SACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 297 ~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.+.+|++..- +|++||++++++|.+++++
T Consensus 394 -------g~~i~~~Ppl~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 394 -------GKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp -------TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred -------CCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence 2578998663 6999999999999998764
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=1.3e-16 Score=140.17 Aligned_cols=270 Identities=16% Similarity=0.115 Sum_probs=177.7
Q ss_pred CCCcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhccC------------cEEEEEeCCCCCCccccH
Q 019899 16 DPSQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRTG------------VELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~~ 81 (334)
..+.+++++++++|+..++... .....+|+....+|.+.........| ..+..+|. .|+
T Consensus 95 ~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~ 167 (387)
T d1vefa1 95 ELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDV 167 (387)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCH
T ss_pred cceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCH
Confidence 4457999999999999998765 23456788888877654322220222 23444442 368
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcc-hhhhhhhc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNP-ANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFV-SMAEILEA 158 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~-~~~~~~~~ 158 (334)
+.+++.+++ ++.+|++ .| +...|. ..+.+.++++.++|++||+++|.||++.+|...|..+. ....+
T Consensus 168 ~~l~~~~~~------~iAavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v--- 237 (387)
T d1vefa1 168 EALKRAVDE------ETAAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI--- 237 (387)
T ss_dssp HHHHHHCCT------TEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC---
T ss_pred HHHHHhcCC------CeEEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCc---
Confidence 888888865 6765555 56 555676 46678899999999999999999999998755454332 22222
Q ss_pred cccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHH--hhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 159 EEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKK--LTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 159 ~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
..++ .+++|.++ .|..++.++. .++..+.+.. +..+++.|+++..++.+.++..+ + ....++++
T Consensus 238 -----~PDi--~~~gK~l~-gG~~~~~~~~-~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~---~--~~~~~~v~ 303 (387)
T d1vefa1 238 -----VPDI--LTLAKALG-GGVPLGVAVM-REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE---R--TRLWERAA 303 (387)
T ss_dssp -----CCSE--EEECGGGG-TTSSCEEEEE-EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--HTTHHHHH
T ss_pred -----CCce--eeecccCC-CCcccccccc-ceeeeeccccCCccccCCCCcchhhhcccchhhcc---c--ccccchHh
Confidence 1122 35789997 7888888887 6666665543 24456778888888888875432 1 33455666
Q ss_pred HHHHHHHHHHHhCCCcccC--CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-
Q 019899 237 KLYDSFVAGLKQLGIRCSE--SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS- 313 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~- 313 (334)
+..+++.+.|+++.-+... ..-|++..+++.... ......++.++|+.+.+.. ++.+|++.+-
T Consensus 304 ~~g~~l~~~L~~l~~~~v~~vrg~Gl~~~ie~~~~~--------~~~~~~~~~~~g~l~~~~g------~~~ir~~Ppl~ 369 (387)
T d1vefa1 304 ELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKA--------APYIARLEKEHRVLALQAG------PTVIRFLPPLV 369 (387)
T ss_dssp HHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSCS--------HHHHHHHHHHHCEECEESS------TTEEEECCCTT
T ss_pred hhhHHHHHHHHhcCCCceEEEeecceEEEEEEeCCc--------hHHHHHHHHHCCCeEEecC------CCEEEEECCcc
Confidence 7778888888775322211 112445556765431 2334444556788766422 4578988663
Q ss_pred CCcccHHHHHHHHHHHH
Q 019899 314 LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 314 ~~~~~l~~~l~~l~~~~ 330 (334)
+|+++++++++++++++
T Consensus 370 it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 370 IEKEDLERVVEAVRAVL 386 (387)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 69999999999999886
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.70 E-value=8.2e-15 Score=128.48 Aligned_cols=159 Identities=13% Similarity=0.135 Sum_probs=115.7
Q ss_pred CCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 17 PSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
...++.++++|.|+.+++.++ .++||+|++|..+|.+...++. ..|++++.+++++ +....+.+..+..... .
T Consensus 36 ~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~-~~g~~pv~~Di~~-~~~~~~~~~~~~~~~~----~ 109 (374)
T d1o69a_ 36 SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPIC-YLKAKPVFIDCDE-TYNIDVDLLKLAIKEC----E 109 (374)
T ss_dssp CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH-HTTCEEEEECBCT-TSSBCHHHHHHHHHHC----S
T ss_pred cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHh-hccceeEeccccc-ccccccccccccchhc----c
Confidence 457999999999999999998 7899999999999999999988 8999999999853 2223333333222111 1
Q ss_pred CceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccc-cCCCCcchhhhhhhccccCCCcEEEEecc--
Q 019899 96 VKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSI-FGNEEFVSMAEILEAEEVDKDRVHIIYGL-- 172 (334)
Q Consensus 96 ~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-- 172 (334)
.++++++++ +..|...+ +.++.++|+++|++||+|.+++.+. +.+.. .. .-.++.+.||
T Consensus 110 ~~~~aii~~---~~~G~~~d---~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~---~G---------~~gd~~~fSf~~ 171 (374)
T d1o69a_ 110 KKPKALILT---HLYGNAAK---MDEIVEICKENDIVLIEDAAEALGSFYKNKA---LG---------TFGEFGVYSYNG 171 (374)
T ss_dssp SCCCEEEEE---CGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TT---------SSSSEEEEECCT
T ss_pred ccccccccc---ccccchhh---hHHHHHHhhccCcchhhhhhhhhcceECCee---cC---------CCCceEEEeccC
Confidence 368888877 45677788 9999999999999999999988643 22211 11 1123455566
Q ss_pred cccCCCCCceEEEEeecCHHHHHHHHHhh
Q 019899 173 SKDLSLPGFRTGVIYSYNESVLAAAKKLT 201 (334)
Q Consensus 173 sK~~~~~g~r~g~i~~~~~~~~~~~~~~~ 201 (334)
+|.++ .| ..|.+++.++++.+.++..+
T Consensus 172 ~K~l~-tg-eGG~i~tnn~~~~~~~~~~~ 198 (374)
T d1o69a_ 172 NKIIT-TS-GGGMLIGKNKEKIEKARFYS 198 (374)
T ss_dssp TSSSC-CS-SCEEEEESCHHHHHHHHHHT
T ss_pred ccccc-cc-cceeehhhhHHHHHhhcccc
Confidence 58886 33 35888888999988887653
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.69 E-value=1.3e-15 Score=135.91 Aligned_cols=300 Identities=14% Similarity=0.110 Sum_probs=171.2
Q ss_pred CCCcEEEecCcHHHHHHHHHHh--cCCCCeEEecCCCCCChhhhhhhcc-----------CcEEEEEeCCCC-------C
Q 019899 16 DPSQIVLTAGATPAVEILCFCL--ADHGNALLVPSPYYPGFDRDIRFRT-----------GVELIPVHCRST-------D 75 (334)
Q Consensus 16 ~~~~i~~~~g~~~~~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~-----------g~~v~~v~~~~~-------~ 75 (334)
..+.+++++++++|+..++... ....++|+....+|.+......-.. ......++.... .
T Consensus 99 ~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (431)
T d1zoda1 99 GLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERN 178 (431)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEET
T ss_pred ccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccc
Confidence 4578999999999999998764 2355678877777776443221011 111222322110 1
Q ss_pred CccccHHHHHHHHHHHHHcC-CceeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchh
Q 019899 76 NFAFSITALDQAFNQARKRG-VKVRGILICNP-ANPVGN-IIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSM 152 (334)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~-~~~~~i~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~ 152 (334)
....+.+.++.......... .++. .++..| +...|. ..|.+.++++.++|++||+++|.||++.++...|..+..-
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~iA-avi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~ 257 (431)
T d1zoda1 179 GAYDYLAELDYAFDLIDRQSSGNLA-AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQ 257 (431)
T ss_dssp TEECHHHHHHHHHHHHHHHCCSCEE-EEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHH
T ss_pred cchhhhhhHHHHHHHHHHhcccccc-ceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccc
Confidence 11123444444433322222 3455 455556 545566 4677889999999999999999999999866555443222
Q ss_pred -hhhhhccccCCCcEEEEecccccCCCCCceEEEEeecCHHHHHHHHHh----hcccCCChHHHHHHHHhhCChHHHHHH
Q 019899 153 -AEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLAAAKKL----TRFCSISAPTQRLLISMLSDTKFIQEY 227 (334)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~ 227 (334)
..+. +| +.+++|.++ .|+..+.++. .+++.+.+... ..+++.++++..++.+.++..+. +..
T Consensus 258 ~~gv~------PD----i~~~gK~l~-gG~p~~av~~-~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~-~~~ 324 (431)
T d1zoda1 258 RDGVT------PD----ILTLSKTLG-AGLPLAAIVT-SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR-DGL 324 (431)
T ss_dssp HHTCC------CS----EEEECHHHH-TTSSCEEEEE-CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH-TTH
T ss_pred cCCCC------cc----hhccccccc-cccccceeee-eecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhh-hhh
Confidence 1111 22 335789997 7888888888 67776666542 33466788888777777653221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCC--CCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCC
Q 019899 228 LETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIP--SYSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305 (334)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~ 305 (334)
.++..+.-....+.+.+.+.+.++......-|.+..+++..... .........+...+++ +|+....-.. ....+
T Consensus 325 ~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~-~Gl~~~~~~~--~~~~~ 401 (431)
T d1zoda1 325 VARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQL--PGMGG 401 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECC--TTSCC
T ss_pred hHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHH-hCcccCeeee--cCCCC
Confidence 22222222223333444444444332212224444455432111 1111233456677554 7886421111 11256
Q ss_pred eEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 306 WFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 306 ~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
.+|++.+. +|++++++++++|.+++++
T Consensus 402 ~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 402 VFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 79998764 6999999999999999986
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.69 E-value=7.6e-16 Score=136.12 Aligned_cols=287 Identities=14% Similarity=0.123 Sum_probs=167.0
Q ss_pred CCcEEEecCcHHHHHHHHHHhc----------CCCCeEEecCCCCCChhhhhhhccCcEEE---EEeCCCCCCc---ccc
Q 019899 17 PSQIVLTAGATPAVEILCFCLA----------DHGNALLVPSPYYPGFDRDIRFRTGVELI---PVHCRSTDNF---AFS 80 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~----------~~gd~vl~~~p~~~~~~~~~~~~~g~~v~---~v~~~~~~~~---~~~ 80 (334)
.+.+.+++++++++..++.... ....+++.....|...........+.... ..|.. ..-. .-+
T Consensus 96 ~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 174 (404)
T d1z7da1 96 YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFA-PQFSKVPYDD 174 (404)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECTTC
T ss_pred cceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCC-ccccccccch
Confidence 5679999999999998876532 12235666666666543332201111110 11100 0111 124
Q ss_pred HHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcc
Q 019899 81 ITALDQAFNQARKRGVKVRGILICNPANPVGNII-PRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAE 159 (334)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (334)
.+.+++.+.+ .++.+|++..-+...|.+. +.+.+++|.++|++||+++|+||++.+|...|..+.. ...
T Consensus 175 ~~~l~~~~~~-----~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~-e~~---- 244 (404)
T d1z7da1 175 LEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV-HHY---- 244 (404)
T ss_dssp HHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG-GGG----
T ss_pred HHHHHHHhcC-----CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccc-ccc----
Confidence 5666665543 2566555543366778765 5556999999999999999999999876544443221 111
Q ss_pred ccCCCcEEEEecccccCCCCC-ceEEEEeecCHHHHHHHHHh--hcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 019899 160 EVDKDRVHIIYGLSKDLSLPG-FRTGVIYSYNESVLAAAKKL--TRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIK 236 (334)
Q Consensus 160 ~~~~~~~~~~~s~sK~~~~~g-~r~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (334)
+..+| +.+++|.++ .| ..+|.++. ++++.+.++.. ..+++.|+++..++.+.++.... +...+...+.-.
T Consensus 245 gv~PD----ivt~gK~l~-gG~~p~~~v~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~~~~~~~~~~~~ 317 (404)
T d1z7da1 245 NVKPD----VILLGKALS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-EKLCENAEKLGG 317 (404)
T ss_dssp TCCCS----EEEECGGGG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHH
T ss_pred CCCCC----EEEEccccc-CCCCCcccccc-hHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-chhhhhhccchh
Confidence 11122 237899998 55 78999998 88887776543 34567788888888887754221 122233333333
Q ss_pred HHHHHHHHHHHhCCCcccCCCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CC
Q 019899 237 KLYDSFVAGLKQLGIRCSESSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LT 315 (334)
Q Consensus 237 ~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~ 315 (334)
...+.+.+.+++.++......-|.+..+.+..... ...++...+++ +||.+.|.. ++.+|+..+. ++
T Consensus 318 ~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-----~~~~~~~~l~~-~Gl~~~~~~------~~~ir~~Ppl~it 385 (404)
T d1z7da1 318 PFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV-----NVLDICLKLKE-NGLITRDVH------DKTIRLTPPLCIT 385 (404)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTC-----CHHHHHHHHHH-TTEECCEET------TTEEEECCCTTCC
T ss_pred HHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-----cHHHHHHHHHh-CCeEEecCC------CCEEEEECCcCCC
Confidence 34444555555544322111234555667654322 23467777444 899986532 4678998653 69
Q ss_pred cccHHHHHHHHHHHHHHc
Q 019899 316 HEDIPLVIERIQKVAETC 333 (334)
Q Consensus 316 ~~~l~~~l~~l~~~~~~~ 333 (334)
++++++++++|.++++++
T Consensus 386 ~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 386 KEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999875
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.68 E-value=2.4e-15 Score=131.73 Aligned_cols=279 Identities=10% Similarity=0.042 Sum_probs=174.6
Q ss_pred CCcEEEecCcHHHHHHHHHHhc-CCC--CeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 17 PSQIVLTAGATPAVEILCFCLA-DHG--NALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 17 ~~~i~~~~g~~~~~~~~~~~l~-~~g--d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
..+++.++++|.|+.+++.++. .+| |+|++|..+|.+...++. ..|++++.++++++ ..++.+++++.++.
T Consensus 46 ~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~-~~G~~pv~vDi~~~--~~~~~~~~~~~~~~--- 119 (371)
T d2fnua1 46 VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLL-ESGYTPVFAGIKND--GNIDELALEKLINE--- 119 (371)
T ss_dssp CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHH-HTTCEEEECCBCTT--SSBCGGGSGGGCCT---
T ss_pred cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeee-ccCccccccccccc--ccccchhhhhhccc---
Confidence 4579999999999999999984 344 479999999999999888 89999999998543 34556777776665
Q ss_pred cCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEeccc
Q 019899 94 RGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLS 173 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 173 (334)
++++|+++ +..|...+ +.++.++|+++++++|+|.+++.+..-.... .... .+..++-...+
T Consensus 120 ---~t~avi~v---h~~G~~~~---~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~--~G~~-------g~~~~~Sf~~~ 181 (371)
T d2fnua1 120 ---RTKAIVSV---DYAGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQNKK--VGGF-------ALASVFSFHAI 181 (371)
T ss_dssp ---TEEEEEEE---CGGGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETTEE--TTSS-------SSEEEEECCTT
T ss_pred ---hhhccccc---cccccccc---cccccccccccchhhccchhhccCceecccc--CCcc-------ccccccccccc
Confidence 89988877 56688888 8899999999999999999988743211111 1100 22223333446
Q ss_pred ccCCCCCceEEEEeecCHHHHHHHHHhhccc------------------CCChHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 019899 174 KDLSLPGFRTGVIYSYNESVLAAAKKLTRFC------------------SISAPTQRLLISMLSDTKFIQEYLETNKRRI 235 (334)
Q Consensus 174 K~~~~~g~r~g~i~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (334)
|.++ .| ..|++++.++++.+.++.....+ ..+.+....+..-++. ++++.+ +-
T Consensus 182 K~l~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~---l~~~~~----~R 252 (371)
T d2fnua1 182 KPIT-TA-EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKK---APFLMQ----KR 252 (371)
T ss_dssp SSSC-CS-SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTT---HHHHHH----HH
T ss_pred cccc-cc-cceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhh---ccchhh----hh
Confidence 9886 44 36888888999998887654321 1222222222222222 233322 33
Q ss_pred HHHHHHHHHHHHhC-CCcccCC----C-ceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCc-CC-------
Q 019899 236 KKLYDSFVAGLKQL-GIRCSES----S-AGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSAC-HC------- 301 (334)
Q Consensus 236 ~~~~~~~~~~l~~~-g~~~~~~----~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~-~~------- 301 (334)
+++.+++.+.|.+. ++....+ . ..+...+.+.... .....++.+. |+++||.+.+.... ..
T Consensus 253 ~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~r~~~~~~-L~~~gI~~~~~y~pl~~~~~~~~~ 327 (371)
T d2fnua1 253 EEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF----FTCKKLILES-LHKRGILAQVHYKPIYQYQLYQQL 327 (371)
T ss_dssp HHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG----GGGHHHHHHH-HHHTTEECBCCCCCGGGSHHHHHH
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccc----hhHHHHHHHH-HHHCCCCcceeCcccccCHHHHhc
Confidence 34455566667665 2332211 1 1112222333211 1133567777 56689998754320 00
Q ss_pred -CCC----------CeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 302 -IEP----------GWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 302 -~~~----------~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
... ..+.+-+.. ++++|+++.++.+.++++++
T Consensus 328 ~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 328 FNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp HCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 011 235554443 69999999999999998763
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.65 E-value=3.4e-15 Score=133.93 Aligned_cols=298 Identities=14% Similarity=0.099 Sum_probs=174.9
Q ss_pred hhhhhhhcCCCCCCCCcEEEecCcHHHHHHHHHHhc----------------------------CCCCeEEecCCCCCCh
Q 019899 3 GFMSQVLGQAVSFDPSQIVLTAGATPAVEILCFCLA----------------------------DHGNALLVPSPYYPGF 54 (334)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~l~----------------------------~~gd~vl~~~p~~~~~ 54 (334)
+.+.+++....+.+.+.+++++++++|+..++.... .+..+|+....+|.+.
T Consensus 103 ~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~ 182 (461)
T d1ohwa_ 103 EKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGR 182 (461)
T ss_dssp HHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCS
T ss_pred HHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCC
Confidence 445555544445566789999999999999876531 2334788888888764
Q ss_pred hhhhhhccCc-------------EEEEEeC-CCCCC---------ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcc
Q 019899 55 DRDIRFRTGV-------------ELIPVHC-RSTDN---------FAFSITALDQAFNQARKRGVKVRGILICNPANPVG 111 (334)
Q Consensus 55 ~~~~~~~~g~-------------~v~~v~~-~~~~~---------~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG 111 (334)
.....-..|. .....+. ..... ...+.+++++.+.....+..++.+|++...+...|
T Consensus 183 t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G 262 (461)
T d1ohwa_ 183 TMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGG 262 (461)
T ss_dssp SHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTT
T ss_pred CcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeecccccccc
Confidence 3222202221 1111110 00000 11346677777776666666777666665466666
Q ss_pred cC-CCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEecccccCCCCCceEEEEeecC
Q 019899 112 NI-IPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIYGLSKDLSLPGFRTGVIYSYN 190 (334)
Q Consensus 112 ~~-~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~g~r~g~i~~~~ 190 (334)
.+ .|.+-+++|.++|++||+++|+||++.++...|..+.. .... .+..-+++ +++|.++ . |+... .
T Consensus 263 ~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~-e~~g----i~~~PDiv--~~gK~l~-~----g~~~~-~ 329 (461)
T d1ohwa_ 263 DNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH-EHWG----LDDPADVM--TFSKKMM-T----GGFFH-K 329 (461)
T ss_dssp CBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGG-GGGC----CSSCCSEE--EECGGGS-S----EEEEE-C
T ss_pred ccCchhhHHHHHHHHHHhhCcceeccccccccccccccccc-cccc----cccCchhh--hhhhccc-c----ccccc-c
Confidence 54 56778999999999999999999999987665543221 1111 11112233 6889886 4 33333 2
Q ss_pred HHHHHH-HHHhhcccCCChHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C--CcccCCCceeEEe
Q 019899 191 ESVLAA-AKKLTRFCSISAPTQRLLISMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL----G--IRCSESSAGLYCW 263 (334)
Q Consensus 191 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g--~~~~~~~~g~~~~ 263 (334)
..+... ...+...++.++.+..++.+.++..+ + ....++++++-+++.+.|+++ . +.-+.. .|++..
T Consensus 330 ~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~---~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG-~Gl~~~ 403 (461)
T d1ohwa_ 330 EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIK---R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-RGTFCS 403 (461)
T ss_dssp GGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-ETTEEE
T ss_pred cccccccccccccccccccccchhhcccchhhh---h--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeee-eeEEEE
Confidence 222110 01123446678887777777665322 1 123334444445555555443 1 111112 355566
Q ss_pred eecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 264 ADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
++++.. ....++...+++ +|+.+.+.. ++.||+..+- +++++++.+++++.+++++
T Consensus 404 ie~~~~------~~~~~i~~~~~~-~Gll~~~~~------~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 404 FDTPDE------SIRNKLISIARN-KGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp EECSSH------HHHHHHHHHHHH-TTEECEEET------TTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEcCCH------HHHHHHHHHHHH-CCeEEeeCC------CCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 777642 234567777555 899987632 4678988653 6999999999999999876
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.54 E-value=9.5e-15 Score=127.43 Aligned_cols=283 Identities=10% Similarity=0.055 Sum_probs=158.7
Q ss_pred hhhcCCCCCCCC-cEEEecCcHH-HHHHHHHHhcCCCCeEEecCCC-CCC-hhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 7 QVLGQAVSFDPS-QIVLTAGATP-AVEILCFCLADHGNALLVPSPY-YPG-FDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 7 ~~~~~~~~~~~~-~i~~~~g~~~-~~~~~~~~l~~~gd~vl~~~p~-~~~-~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+.+.+.++.+.+ .|++++|++. ++.++...+..+++++++.... |.. +....+ ..|.++..+.. +.+...+.+
T Consensus 55 ~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~-~~g~~~~~~~~--~~~~~~~~~ 131 (361)
T d2c0ra1 55 ARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAK-LIGDTHVAASS--EASNYMTLP 131 (361)
T ss_dssp HHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-HHSCEEEEEEC--GGGTTCSCC
T ss_pred HHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhh-hcCceeeeecc--ccccccchh
Confidence 334444555544 6888777654 5566666778888888766532 222 222333 67888888876 344466777
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
.+++.++. .+... .+|.||.+.+ +.++.++|+++|+++++|.+.+. +....++..
T Consensus 132 ~~~~~~~~-------~~~~~---v~~~tg~~~~---~~~i~~~~~~~~al~~vDavss~----g~~~id~~~-------- 186 (361)
T d2c0ra1 132 KLQEIQLQ-------DNAAY---LHLTSNETIE---GAQFKAFPDTGSVPLIGDMSSDI----LSRPFDLNQ-------- 186 (361)
T ss_dssp CGGGCCCC-------TTEEE---EEEESEETTT---TEECSSCCCCTTSCEEEECTTTT----TSSCCCGGG--------
T ss_pred hhhhhccc-------CcceE---EEEeccccee---cceEEEeeccCCceEEEEeeccc----ccccccccc--------
Confidence 77766553 22222 2477899988 77778899999999999999875 222333322
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHH-------------HHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESV-------------LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
. .+.+.|.+|.++++|....++. .+.+ .............++.....+....... .......
T Consensus 187 ~--di~~~s~~k~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 261 (361)
T d2c0ra1 187 F--GLVYAGAQKNLGPSGVTVVIVR--EDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI-EERGGLE 261 (361)
T ss_dssp C--SEEEEETTTTTCCSSCEEEEEE--GGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH-HHTTHHH
T ss_pred c--eeEEEecccccccccCcEEEEE--hHHhhhCccccccccccccccccccccccccceeeehhhhHHHhh-hhccchH
Confidence 2 3445577899986764333333 2211 1111111222222332222222221110 0111122
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-C-cccCC---CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQLG-I-RCSES---SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEP 304 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~g-~-~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~ 304 (334)
....+.+..+..+........ . ..... .....+.+.+|+. .++.++... |+++||.+.+|..+-
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~------~~~~~~~~~-L~~~GI~~~~G~~~~---- 330 (361)
T d2c0ra1 262 GVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE------ELEKEFVKA-SEQEGFVGLKGHRSV---- 330 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCH------HHHHHHHHH-HHHTTEESCBCCTTT----
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCc------ccHHHHHHH-HHHCCCEEecCCCcC----
Confidence 333344444444444444431 1 11111 1223344566643 234566666 677999998886431
Q ss_pred CeEEEEecC-CCcccHHHHHHHHHHHHHHc
Q 019899 305 GWFRCCFTS-LTHEDIPLVIERIQKVAETC 333 (334)
Q Consensus 305 ~~iRi~~~~-~~~~~l~~~l~~l~~~~~~~ 333 (334)
+.+||++.. +++||++++++.|+++.+++
T Consensus 331 g~~RIs~~~~~~~edv~~Lv~~l~~~~~~~ 360 (361)
T d2c0ra1 331 GGLRASIYNAVPYESCEALVQFMEHFKRSR 360 (361)
T ss_dssp CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHHHHhc
Confidence 249999875 69999999999999988775
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3.1e-14 Score=123.81 Aligned_cols=288 Identities=7% Similarity=-0.045 Sum_probs=159.3
Q ss_pred hhhhcCCCCCCCC-cEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCCh--hhhhhhccCcEEEEEeCCCCCCccccH
Q 019899 6 SQVLGQAVSFDPS-QIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGF--DRDIRFRTGVELIPVHCRSTDNFAFSI 81 (334)
Q Consensus 6 ~~~~~~~~~~~~~-~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~--~~~~~~~~g~~v~~v~~~~~~~~~~~~ 81 (334)
++.+.+.++.+.+ .|++++|++++...+ ...+..+++.+++....+... ....+ ..|..++.+... .+...+.
T Consensus 52 r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~ 128 (360)
T d1bjna_ 52 EKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAK-KYCTPNVFDAKV--TVDGLRA 128 (360)
T ss_dssp HHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHT-TTSEEEEEECEE--EETTEEE
T ss_pred HHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHh-hcCccceeeccc--cCCCcch
Confidence 3334444555544 678888776655554 445667778777776555432 22333 466665555542 2223455
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhcccc
Q 019899 82 TALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEV 161 (334)
Q Consensus 82 ~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
+.+++.+.. +++++.+++.+|.||...+ ++.+. ++.+++.+++|.+.+... .....
T Consensus 129 ~~~~~~~~~------~~~~v~v~~~~~~t~~~~~---~~~i~--~~~~~~~v~vDa~~~~~~----~~vd~--------- 184 (360)
T d1bjna_ 129 VKPMREWQL------SDNAAYMHYCPNETIDGIA---IDETP--DFGADVVVAADFSSTILS----RPIDV--------- 184 (360)
T ss_dssp ECCGGGCCC------CSSCSCEEECSEETTTTEE---CCCCC--CCCTTCCEEEECTTTTTS----SCCCG---------
T ss_pred hhhhhhhcc------CCceeEEEecccccccCcc---cccee--cccccceeeeeeeccccc----eeeee---------
Confidence 555555443 6777888888888998887 33333 467899999998876422 11222
Q ss_pred CCCcEEEEecccccCCCCCceEEEEeecCHHH------------HHHHHHhhcccCCChHHHHHHHHhhCChHHHHHHHH
Q 019899 162 DKDRVHIIYGLSKDLSLPGFRTGVIYSYNESV------------LAAAKKLTRFCSISAPTQRLLISMLSDTKFIQEYLE 229 (334)
Q Consensus 162 ~~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (334)
.+.++++.|.+|.++.++. .+.++...... ....................+...... ...+....
T Consensus 185 -~~~dv~~~ss~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 261 (360)
T d1bjna_ 185 -SRYGVIYAGAQKNIGPAGL-TIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKW-LKANGGVA 261 (360)
T ss_dssp -GGCSEEEEETTTTTSSTTC-EEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH-HHHTTHHH
T ss_pred -ccceeEEEEcccccccCCC-ceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHH-HhhhhhHH
Confidence 3345677888898975553 44444412111 111111122222222222222222111 11112223
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCC----CceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcCCCCCC
Q 019899 230 TNKRRIKKLYDSFVAGLKQLGIRCSES----SAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACHCIEPG 305 (334)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~ 305 (334)
...++..+........+...+.....+ .....+.+.+|... +..++... ++++||.+..|+.. -+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~------~~~~~~~~-l~~~Gi~~~~G~~~----~g 330 (360)
T d1bjna_ 262 EMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSA------LDKLFLEE-SFAAGLHALKGHRV----VG 330 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGG------GHHHHHHH-HHHTTEECCBCCTT----TC
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcc------cHHHHHHH-HHHCCCEeecCCCc----cC
Confidence 444445555555555555553332211 11223446666532 33456665 67799999887532 13
Q ss_pred eEEEEecC-CCcccHHHHHHHHHHHHHHcC
Q 019899 306 WFRCCFTS-LTHEDIPLVIERIQKVAETCK 334 (334)
Q Consensus 306 ~iRi~~~~-~~~~~l~~~l~~l~~~~~~~~ 334 (334)
.+|+|+.. .++||++++++.|+++.++|.
T Consensus 331 ~~Ris~~~~~t~edV~~li~~l~e~~~~~~ 360 (360)
T d1bjna_ 331 GMRASIYNAMPLEGVKALTDFMVEFERRHG 360 (360)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHHHHHcC
Confidence 49999875 699999999999999998873
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.32 E-value=1.7e-12 Score=112.79 Aligned_cols=278 Identities=12% Similarity=0.032 Sum_probs=145.3
Q ss_pred hhhcCCCCCCCC-cEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChh--hhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 7 QVLGQAVSFDPS-QIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFD--RDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 7 ~~~~~~~~~~~~-~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~--~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
+.+.+.++++.+ .|++++|+++++..+ ...+..+++++++....+.+.. ..+. ..+...+..... ......++
T Consensus 55 ~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~ 131 (360)
T d1w23a_ 55 NLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAK-LLGETHIAASTK--ANSYQSIP 131 (360)
T ss_dssp HHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-TTSEEEEEEECG--GGTSCSCC
T ss_pred HHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHH-Hhhhcceeeccc--cccccchh
Confidence 334444555555 578888877666654 4445677788887765444322 2233 456665555542 22233344
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccC
Q 019899 83 ALDQAFNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVD 162 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
.+++..+ ... +++..|.||.+.| +.++.++|+++|+++++|.+.+. +....++..
T Consensus 132 ~~~~~~~-------~~~---~~~~~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~----g~~~id~~~-------- 186 (360)
T d1w23a_ 132 DFSEFQL-------NEN---DAYLHITSNNTIY---GTQYQNFPEINHAPLIADMSSDI----LSRPLKVNQ-------- 186 (360)
T ss_dssp CGGGCCC-------CTT---EEEEEEESEETTT---TEECSSCCCCCSSCEEEECTTTT----TSSCCCGGG--------
T ss_pred hhhhccc-------ccc---cceeEecCCcccc---ceeeeeccccceeeEEeeccccc----ccccccccc--------
Confidence 4443322 122 2333577899999 78888999999999999999875 223334432
Q ss_pred CCcEEEEecccccCCCCCceEEEEeecCHHHHH-------------HHHHhhcccCCChHHHHHHHHh----hCChHHHH
Q 019899 163 KDRVHIIYGLSKDLSLPGFRTGVIYSYNESVLA-------------AAKKLTRFCSISAPTQRLLISM----LSDTKFIQ 225 (334)
Q Consensus 163 ~~~~~~~~s~sK~~~~~g~r~g~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~ 225 (334)
++.+++ +++|.++++| ..|+++. ++...+ ..+..............+.... +.... .
T Consensus 187 ~~vd~~--~~~~~k~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 260 (360)
T d1w23a_ 187 FGMIYA--GAQKNLGPSG-VTVVIVK-KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGG--A 260 (360)
T ss_dssp CSEEEE--ETTTTTSCTT-CEEEEEE-HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTH--H
T ss_pred ccceEE--eeccccccCC-cceeeEe-chhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhh--h
Confidence 444444 4555554344 3455554 222211 1111111122222222222111 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccC---CCceeEEeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 226 EYLETNKRRIKKLYDSFVAGLKQL-GIR-CSE---SSAGLYCWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~-g~~-~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
....++............... .+. ... ......+.+.++.. .+..++... +.++||.+..|+.+.
T Consensus 261 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~------~~~~~~~~~-l~~~GI~~~~G~~~~ 330 (360)
T d1w23a_ 261 ---EAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------ELNQQFLAK-AKEQGFVGLNGHRSV 330 (360)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH------HHHHHHHHH-HHHTTEESCBCCTTT
T ss_pred ---HHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCC------ccHHHHHHH-HHHCCCeeeeCCCcc
Confidence 112222222233333333222 121 111 11122344566542 233466665 677999998886542
Q ss_pred CCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 301 CIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 301 ~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
+.+|+|+.+ .+.||++++++.++++.++
T Consensus 331 ----ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 331 ----GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp ----CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ----CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 249999864 5999999999999998875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.28 E-value=4.5e-11 Score=104.67 Aligned_cols=272 Identities=13% Similarity=0.099 Sum_probs=164.3
Q ss_pred CCCCcEEEecCcHHHHHHHHHHh-cCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccHHHHHHHHHH
Q 019899 15 FDPSQIVLTAGATPAVEILCFCL-ADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSITALDQAFNQ 90 (334)
Q Consensus 15 ~~~~~i~~~~g~~~~~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~ 90 (334)
.+.-+.-+-.|++.....++.+. ..+.++++++.-+|+.+..... ...|.+++.++..+ ...+.++ +.
T Consensus 123 md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~---~~~~~~~----~~- 194 (437)
T d1wyua1 123 LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEG---GRTPLPE----VG- 194 (437)
T ss_dssp SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBT---TBCCCCC----CC-
T ss_pred CCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeeccc---ccchhhh----hc-
Confidence 44455556667776666555444 2456789999999987665433 14799999999732 2223222 22
Q ss_pred HHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEEEEe
Q 019899 91 ARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVHIIY 170 (334)
Q Consensus 91 ~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (334)
.++.++++++|++ .|.+-+ ++++++++++.|.++++|..- ... ..+..... .+.+++++
T Consensus 195 -----~~~Aavmi~~Pnt-~G~~ed---~~~i~~~~h~~G~l~~~~ad~--~al-----~~l~~Pg~-----~GaDi~~g 253 (437)
T d1wyua1 195 -----EEVGAVVVQNPNF-LGALED---LGPFAEAAHGAGALFVAVADP--LSL-----GVLKPPGA-----YGADIAVG 253 (437)
T ss_dssp -----TTEEEEEEESSCT-TSBCCC---HHHHHHHHHHTTCEEEEECCT--TGG-----GTBCCHHH-----HTCSEEEE
T ss_pred -----cceeEEEEccccc-cccccc---hHHHHHHhhhccceEEeeech--hhh-----hccccccc-----cccceEee
Confidence 2788999999965 687765 899999999999988866321 111 11111111 45667777
Q ss_pred cccccCCCC----CceEEEEeecCHHHHHH----------------------------HHHhhcc---cCCChHHHHHHH
Q 019899 171 GLSKDLSLP----GFRTGVIYSYNESVLAA----------------------------AKKLTRF---CSISAPTQRLLI 215 (334)
Q Consensus 171 s~sK~~~~~----g~r~g~i~~~~~~~~~~----------------------------~~~~~~~---~~~~~~~~~~~~ 215 (334)
+ +|.||.| |...|++.+ .+++... +++.+.. ++.+.+....+.
T Consensus 254 ~-~q~fg~p~g~GGP~~G~~a~-~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~ 331 (437)
T d1wyua1 254 D-GQSLGLPMGFGGPHFGFLAT-KKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGA 331 (437)
T ss_dssp E-CTTTTCCCGGGCSCCEEEEE-CGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHH
T ss_pred c-cceeccccCCCcCccccccc-cchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHH
Confidence 7 6666532 345677777 4443322 2222221 122222222222
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCceeE--EeeecCCcCCCCChhhHHHHHHHHHHhcCeE
Q 019899 216 SMLSDTKFIQEYLETNKRRIKKLYDSFVAGLKQL-GIRCSESSAGLY--CWADMSGLIPSYSEKGELELWDKLLNIAKIN 292 (334)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 292 (334)
.++... ..+-+.+..++...+++++.+.|.+. |++...+. .++ +.++++. +..++.++|++ +|+.
T Consensus 332 ~Y~~~l--G~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~-~~f~ef~v~~~~--------~~~~i~k~L~d-~G~~ 399 (437)
T d1wyua1 332 MYLAAL--GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALPK--------DPEAVRRALAE-RGFH 399 (437)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECSS--------CHHHHHHHHHH-TTCC
T ss_pred HHhhhc--CcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCC-CeeeEEEEECCC--------CHHHHHHHHHh-CCCC
Confidence 232221 24557788888999999999999886 77755432 222 2234433 34678888555 7885
Q ss_pred EcCCCCcCCCCCCeEEEEecC-CCcccHHHHHHHHHHHH
Q 019899 293 VTPGSACHCIEPGWFRCCFTS-LTHEDIPLVIERIQKVA 330 (334)
Q Consensus 293 v~~g~~~~~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~ 330 (334)
.. -..+....++.+.+++.. .++++|++++++|++++
T Consensus 400 ~~-~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 400 GA-TPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp CC-EECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CC-cccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 31 111111235788999985 58999999999999874
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=1.6e-10 Score=102.38 Aligned_cols=284 Identities=13% Similarity=0.052 Sum_probs=167.6
Q ss_pred CCCCcEEEecCcHHHHHHHHHHh---cCCC----CeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHH
Q 019899 15 FDPSQIVLTAGATPAVEILCFCL---ADHG----NALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQA 87 (334)
Q Consensus 15 ~~~~~i~~~~g~~~~~~~~~~~l---~~~g----d~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~ 87 (334)
.+.-+.-+-.|+|.....++.+. .+++ ..+++..+.+...........+.+++.++. ......+.+.+++.
T Consensus 121 MdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 198 (471)
T d1wyub1 121 MDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPS--GPEGEVDLEALKRE 198 (471)
T ss_dssp CSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECB--CTTSSBCHHHHHHH
T ss_pred CCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeecccc--cccccccchhhhhh
Confidence 33333334455555544444432 1122 234555555655554444367788888886 34456788888877
Q ss_pred HHHHHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEEEeccccccccCCCCcchhhhhhhccccCCCcEE
Q 019899 88 FNQARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVISDEIYGGSIFGNEEFVSMAEILEAEEVDKDRVH 167 (334)
Q Consensus 88 l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (334)
..+ ++.++++.+|++..+..-. .+.+++++++.+..+++|.+--.... .+..... .+.++
T Consensus 199 ~~~------~~a~v~v~~p~~~g~~e~~---~~~~~~~~h~~g~~~~~~~~~~~~~~------~l~~p~~-----~g~di 258 (471)
T d1wyub1 199 LGP------HVAALMLTNPNTLGLFERR---ILEISRLCKEAGVQLYYDGANLNAIM------GWARPGD-----MGFDV 258 (471)
T ss_dssp CST------TEEEEEECSSCTTSCCCTT---HHHHHHHHHHHTCEEEEEGGGGGGTT------TTCCHHH-----HTCSE
T ss_pred hhc------cccceeeccCCCcccccch---hhhhHHHHHhccccccccccchhhhh------hccccCc-----ccccc
Confidence 655 7888999999887655544 78888889999988888865322111 1111111 23334
Q ss_pred EEecccccCC----CCCceEEEEeecCHHHHHHHHH----------------hhc----ccCCC-hHHHHHHHHhhCChH
Q 019899 168 IIYGLSKDLS----LPGFRTGVIYSYNESVLAAAKK----------------LTR----FCSIS-APTQRLLISMLSDTK 222 (334)
Q Consensus 168 ~~~s~sK~~~----~~g~r~g~i~~~~~~~~~~~~~----------------~~~----~~~~~-~~~~~~~~~~l~~~~ 222 (334)
++...++.+| ..|..+|++.+ ++++...+.- .+. ..+.| .+...++..++..
T Consensus 259 v~vg~~q~~G~P~~~GGP~~G~~a~-~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsl-- 335 (471)
T d1wyub1 259 VHLNLHKTFTVPHGGGGPGSGPVGV-KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRT-- 335 (471)
T ss_dssp EECCTTTTTCCCCTTSCCCCCCEEE-CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHH--
T ss_pred cccccccccccccccccccccceee-hhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHH--
Confidence 4445555554 33556788887 5555443310 000 01122 2222222223322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceeE--EeeecCCcCCCCChhhHHHHHHHHHHhcCeEEcCCCCcC
Q 019899 223 FIQEYLETNKRRIKKLYDSFVAGLKQLGIRCSESSAGLY--CWADMSGLIPSYSEKGELELWDKLLNIAKINVTPGSACH 300 (334)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~ 300 (334)
...+-+.+..++...+++++.++|+..|+++..+ +.+| +.+++++... ..++.++|++ +|+.- |...|.
T Consensus 336 lG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~-~~ff~EFvv~~~~~~~------~~~i~k~L~~-~G~~~-~~~~~p 406 (471)
T d1wyub1 336 LGLEGLKKAAALAVLNARYLKELLKEKGYRVPYD-GPSMHEFVAQPPEGFR------ALDLAKGLLE-LGFHP-PTVYFP 406 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSC-SSCCSCEEEBCSTTCC------HHHHHHHHHH-TTCCC-CEESCS
T ss_pred hCchhHHHHHHHHHHHHHHHHHHHhhcCceeccC-cceeeEEeecCCCCCC------HHHHHHHHHH-cCCCC-CcccCc
Confidence 2266678899999999999999998888886533 3332 2345554332 3568888665 78843 323333
Q ss_pred CCCCCeEEEEecC-CCcccHHHHHHHHHHHHHH
Q 019899 301 CIEPGWFRCCFTS-LTHEDIPLVIERIQKVAET 332 (334)
Q Consensus 301 ~~~~~~iRi~~~~-~~~~~l~~~l~~l~~~~~~ 332 (334)
...++.+-+++.. .|++|||++++.|++++++
T Consensus 407 ~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e 439 (471)
T d1wyub1 407 LIVKEALMVEPTETEAKETLEAFAEAMGALLKK 439 (471)
T ss_dssp TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred CCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2235678888886 5899999999999999874
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.87 E-value=0.72 Score=35.56 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=58.8
Q ss_pred CcEEEecCcHHHHHH-HHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEI-LCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~-~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++=. +...|.+.|-+|++..-.-.......+ ..+.+.+..++ -|.+++++.++...++-+
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~-~~~~~~~~~Dv-------~~~~~v~~~~~~~~~~~g 76 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE-AVGAHPVVMDV-------ADPASVERGFAEALAHLG 76 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTTCEEEECCT-------TCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HcCCeEEEEec-------CCHHHHHHHHHHHHHhcC
Confidence 456777777777744 455667888888876544333434444 45666555554 256777777766655445
Q ss_pred ceeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 019899 97 KVRGILICNP-ANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 97 ~~~~i~~~~p-~nptG~--~~~~~~l~~i~~~ 125 (334)
++. +++.+. .++.+. -.+.+++++..++
T Consensus 77 ~iD-ilVnnAG~~~~~~~~~~~~~~~~~~~~v 107 (242)
T d1ulsa_ 77 RLD-GVVHYAGITRDNFHWKMPLEDWELVLRV 107 (242)
T ss_dssp SCC-EEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred Cce-EEEECCcccccCchhhCcchhhhccccc
Confidence 788 444444 333332 3566777777764
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.86 E-value=1.1 Score=30.66 Aligned_cols=107 Identities=12% Similarity=0.142 Sum_probs=54.7
Q ss_pred CCCcEEEecCc---HHHHHHHHHHhcCCC-CeEEecCCCCCC---------hhhhhhhccCcEEEEEeCCCCCCccccHH
Q 019899 16 DPSQIVLTAGA---TPAVEILCFCLADHG-NALLVPSPYYPG---------FDRDIRFRTGVELIPVHCRSTDNFAFSIT 82 (334)
Q Consensus 16 ~~~~i~~~~g~---~~~~~~~~~~l~~~g-d~vl~~~p~~~~---------~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 82 (334)
++..|.+.-.+ ...=..++..|...| .+|.--+|.+.. ..+... ..+...+-+ ..+
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~---~vDlvvi~v--------p~~ 75 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPD---EIDLAIIVV--------PKR 75 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSS---CCSEEEECS--------CHH
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCC---CCceEEEec--------ChH
Confidence 46666666432 111234666776544 467666776543 222211 122222222 234
Q ss_pred HHHHHHHHHHHcCCceeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCcEEEEe
Q 019899 83 ALDQAFNQARKRGVKVRGILICNP-ANPVGNIIPRETLYELLDFAREKNIHVISD 136 (334)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~i~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~vi~D 136 (334)
.+.+.+++.... +++.+++.+. -..+|. -....-+++.++|+++|+.++=.
T Consensus 76 ~~~~~~~~~~~~--g~~~~vi~s~Gf~e~~~-~~~~~~~~l~~~a~~~girv~GP 127 (129)
T d2csua1 76 FVKDTLIQCGEK--GVKGVVIITAGFGETGE-EGKREEKELVEIAHKYGMRIIGP 127 (129)
T ss_dssp HHHHHHHHHHHH--TCCEEEECCCSSTTSCH-HHHHHHHHHHHHHHHHTCEEECS
T ss_pred HhHHHHHHHHHc--CCCEEEEecccccccch-hhHHHHHHHHHHHHHcCCEEeCC
Confidence 444444443333 5666666554 234443 12333467899999999998843
|
| >d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Putative Holliday junction resolvase RuvX domain: Hypothetical protein, YqgF homologue species: Thermus thermophilus [TaxId: 274]
Probab=88.15 E-value=0.59 Score=30.42 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=43.7
Q ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCcEEE-Eecccc
Q 019899 77 FAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRE-TLYELLDFAREKNIHVI-SDEIYG 140 (334)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~vi-~D~~~~ 140 (334)
...+++.+.+.++++ ++..+++-.|-|+.|..-+.. ..++.++..++.++.|. +||-++
T Consensus 36 ~~~~~~~l~~ii~e~-----~i~~iVvGlP~~~dG~~~~~~~~v~~f~~~L~~~~lpv~~~DErlT 96 (98)
T d1iv0a_ 36 LEEDVEALLDFVRRE-----GLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHHH-----TCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSCC
T ss_pred chHHHHHHHHHHHhh-----ccceeEcccccccCCCcCHHHHHHHHHHHHHhhCCCCEEEEcCCCC
Confidence 345688899999987 899999999988777755432 35666665566788776 888764
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=87.71 E-value=0.49 Score=38.74 Aligned_cols=45 Identities=9% Similarity=0.232 Sum_probs=35.9
Q ss_pred ceeEEEEeCC-CCCcccC----------------CCHHHHHHHHHHHHhcCcEEEEeccccc
Q 019899 97 KVRGILICNP-ANPVGNI----------------IPRETLYELLDFAREKNIHVISDEIYGG 141 (334)
Q Consensus 97 ~~~~i~~~~p-~nptG~~----------------~~~~~l~~i~~~~~~~~~~vi~D~~~~~ 141 (334)
++.+|.|+-| .||.|.. =+.++++++++.|++.||.||.|-++--
T Consensus 28 G~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH 89 (354)
T d1g94a2 28 GYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINH 89 (354)
T ss_dssp TCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSE
T ss_pred CCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEeeccc
Confidence 6788888877 4565421 1588999999999999999999999743
|
| >d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Bacterial cell division inhibitor SulA domain: Hypothetical protein PA3008 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.14 E-value=3 Score=27.95 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=60.5
Q ss_pred cEEEecCcHHHHHHHHHH---hcCCCC--eEEecCCCCCChhhhhhhccCcEE---EEEeCCCCCCccccHHHHHHHHHH
Q 019899 19 QIVLTAGATPAVEILCFC---LADHGN--ALLVPSPYYPGFDRDIRFRTGVEL---IPVHCRSTDNFAFSITALDQAFNQ 90 (334)
Q Consensus 19 ~i~~~~g~~~~~~~~~~~---l~~~gd--~vl~~~p~~~~~~~~~~~~~g~~v---~~v~~~~~~~~~~~~~~l~~~l~~ 90 (334)
++.....+.+.+.+++.. +.+.++ -|+.-.|-|..|...+. ..|.+. ..|.. .+..-.+-.++++++.
T Consensus 6 el~~~~~~~~~l~LL~P~L~~l~~~~~~rwi~wI~Pp~~p~a~~L~-~~Gi~~~rll~v~~---~~~~d~lwa~EqaL~s 81 (119)
T d1ofux_ 6 ELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLR-RAGLNRERILLLQA---KDNAAALALSCEALRL 81 (119)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHH-HTTCCTTSEEEECC---SSHHHHHHHHHHHHHH
T ss_pred eecccCCcHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCccCHHHHH-HcCCCCCeEEEEeC---CChHHHHHHHHHHHhc
Confidence 344445555545555443 444443 37777777888888888 788653 44442 2222345667777776
Q ss_pred HHHcCCceeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCcEEE
Q 019899 91 ARKRGVKVRGILICNPANPVGNIIPRETLYELLDFAREKNIHVI 134 (334)
Q Consensus 91 ~~~~~~~~~~i~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~vi 134 (334)
+....++..+.+ ++..+++++.-.|++.+...+
T Consensus 82 ------g~~~aVl~w~~~-----l~~~~~RRLqlAA~~g~t~~~ 114 (119)
T d1ofux_ 82 ------GRSHTVVSWLEP-----LSRAARKQLSRAAQLGQAQSL 114 (119)
T ss_dssp ------TCEEEEEECCSS-----CCHHHHHHHHHHHHHHTCEEE
T ss_pred ------CCccEEEEcCCC-----CChHHHHHHHHHHHhcCCEEE
Confidence 443445554432 667788888888888776655
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.69 E-value=1.5 Score=33.65 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=59.0
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++=.. ...|.+.|.+|++..-.-.......+ ..+-+...+.++ --|.+++++.++......+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g 79 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA-ELADAARYVHLD-----VTQPAQWKAAVDTAVTAFG 79 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTGGGEEEEECC-----TTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HhhCcceEEEee-----cCCHHHHHHHHHHHHHHhC
Confidence 4577777777788544 45567888888776543333333333 345455555542 2356777777776655545
Q ss_pred ceeEEEEeCCCCCcccC--CCHHHHHHHHHH
Q 019899 97 KVRGILICNPANPVGNI--IPRETLYELLDF 125 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~~--~~~~~l~~i~~~ 125 (334)
++..++-+....+.+.. .+.+++++..++
T Consensus 80 ~idilinnAG~~~~~~~~~~~~~~~~~~~~v 110 (244)
T d1nffa_ 80 GLHVLVNNAGILNIGTIEDYALTEWQRILDV 110 (244)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred CCeEEEECCcccCCCchhhCCHHHHhHHhhc
Confidence 78844444334444443 356667766653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=85.64 E-value=3.8 Score=31.52 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=62.5
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhhhh---hccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRDIR---FRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~~~---~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+.+++.+|++.++=.. ...|.+.|-+|++..-.-....+..+ ...|.++..+.++ --|.+++++.++...+
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~D-----v~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCD-----VSNTDIVTKTIQQIDA 83 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECC-----TTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEcc-----CCCHHHHHHHHHHHHH
Confidence 4567777777777544 45567788778776655444433322 1346677766652 2367788888877766
Q ss_pred cCCceeEEEEeCCCCCccc--CCCHHHHHHHHHHH
Q 019899 94 RGVKVRGILICNPANPVGN--IIPRETLYELLDFA 126 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~--~~~~~~l~~i~~~~ 126 (334)
+.+++..++-+...++.+. -.+.++++++.++-
T Consensus 84 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N 118 (260)
T d1h5qa_ 84 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVN 118 (260)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHH
T ss_pred HhCCCcEecccccccccCCHHHhcccccccccccc
Confidence 6668885444333333332 35767777777643
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=85.18 E-value=1.4 Score=33.70 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=58.8
Q ss_pred CcEEEecCcHHHH-HHHHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAV-EILCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~-~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++ ..+...|.+.|-+|++..-.-....+..+ ..|.++..+.++ --+.+++++.++...+..+
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D-----ls~~~~i~~~~~~i~~~~g 78 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA-ALEAEAIAVVAD-----VSDPKAVEAVFAEALEEFG 78 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCCSSEEEEECC-----TTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HcCCceEEEEec-----CCCHHHHHHHHHHHHHHhC
Confidence 4456666666666 44456677899888887544444444444 566667766652 1356777777776655545
Q ss_pred ceeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 019899 97 KVRGILICNPANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~--~~~~~~l~~i~~~ 125 (334)
++..++.+....+.+. -.+.+++.+..+.
T Consensus 79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~ 109 (241)
T d2a4ka1 79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRV 109 (241)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHH
T ss_pred CccEeccccccccccchhhhhcccccccccc
Confidence 7885554433443333 3355555555443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=85.13 E-value=3.3 Score=31.63 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=60.0
Q ss_pred CcEEEecCcHHHHHH-HHHHhcCCCCeEEecCCCCC-ChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcC
Q 019899 18 SQIVLTAGATPAVEI-LCFCLADHGNALLVPSPYYP-GFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRG 95 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~-~~~~l~~~gd~vl~~~p~~~-~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (334)
+.+++.+|++.++=. +...|.+.|-+|++..-.-. .....++ ..|.++..+.++ --|.+++++.++...+..
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~-~~g~~~~~~~~D-----vs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR-NLGRRVLTVKCD-----VSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECC-----TTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHH-HcCCcEEEEEee-----CCCHHHHHHHHHHHHHHc
Confidence 457777888878844 45556778877776543221 2223344 567677776652 235677777776665554
Q ss_pred CceeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 019899 96 VKVRGILICNP-ANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 96 ~~~~~i~~~~p-~nptG~--~~~~~~l~~i~~~ 125 (334)
+++.. ++.|. ..+.+. -++.+++++..++
T Consensus 79 G~iDi-lVnnAG~~~~~~~~~~~~e~~~~~~~v 110 (247)
T d2ew8a1 79 GRCDI-LVNNAGIYPLIPFDELTFEQWKKTFEI 110 (247)
T ss_dssp SCCCE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCCE-EEECCCCCCCCChHhCCHHHhhhhhee
Confidence 57884 44444 444443 3466777777663
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.31 E-value=4.7 Score=30.81 Aligned_cols=102 Identities=13% Similarity=0.053 Sum_probs=60.6
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhh---hhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRD---IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~---~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+.+++.+|++.++=.. ...|.+.|.+|++..-.-...... ++ ..|.++..+.++ --|.+++++.++...+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~-~~g~~~~~~~~D-----vt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK-SFGYESSGYAGD-----VSKKEEISEVINKILT 83 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHH-TTTCCEEEEECC-----TTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCcEEEEEcc-----CCCHHHHHHHHHHHHH
Confidence 5678888887788554 445678888887765432222222 23 356666666652 2367788888877766
Q ss_pred cCCceeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 019899 94 RGVKVRGILICNPANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 94 ~~~~~~~i~~~~p~nptG~--~~~~~~l~~i~~~ 125 (334)
+.+++..++-+....+.+. -.+.++++++.++
T Consensus 84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~v 117 (251)
T d2c07a1 84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRT 117 (251)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred hcCCceeeeeccccccccccccccHHHHhhhhee
Confidence 6668884444333333333 2355667666653
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=84.19 E-value=1.7 Score=29.00 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=54.0
Q ss_pred CCeEEecCCCCCChhhhhhhccC--cEEEEEeCCCCCCccccHHHHHHHHHHHHHcCCceeEEEEeCCCCCcccCCCHHH
Q 019899 41 GNALLVPSPYYPGFDRDIRFRTG--VELIPVHCRSTDNFAFSITALDQAFNQARKRGVKVRGILICNPANPVGNIIPRET 118 (334)
Q Consensus 41 gd~vl~~~p~~~~~~~~~~~~~g--~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~p~nptG~~~~~~~ 118 (334)
|..-...-|.|.+..++.+ ..| ..++++|- ..-.++..++++. .++++++.... .|..|
T Consensus 42 gG~~~~giPVf~sV~eAv~-~~~~~~SvIfVPp------~~a~dA~~EAi~a------gI~~iV~ITEg------IP~~D 102 (119)
T d2nu7a1 42 GGTTHLGLPVFNTVREAVA-ATGATASVIYVPA------PFCKDSILEAIDA------GIKLIITITEG------IPTLD 102 (119)
T ss_dssp TTEEETTEEEESSHHHHHH-HHCCCEEEECCCG------GGHHHHHHHHHHT------TCSEEEECCCC------CCHHH
T ss_pred CCcccCCCchhhHHHHHHH-HhCCCeEEEeccH------HHHHHHHHHHHHC------CCCEEEEecCC------CCHHH
Confidence 3345567789999998877 545 45666663 2346777777765 78877777555 55777
Q ss_pred HHHHHHHHHhcCcEEE
Q 019899 119 LYELLDFAREKNIHVI 134 (334)
Q Consensus 119 l~~i~~~~~~~~~~vi 134 (334)
..++.+.+++.+..+|
T Consensus 103 ~~~i~~~~~~~~~~li 118 (119)
T d2nu7a1 103 MLTVKVKLDEAGVRMI 118 (119)
T ss_dssp HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhhCCCEEe
Confidence 8899999999998876
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=83.42 E-value=2.8 Score=32.26 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=59.1
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++=.. ...|.+.|.+|++..-.-.......+ ..+.+...+..+ --|.+++++.++....+.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~-~~~~~~~~~~~D-----v~~~~~~~~~~~~~~~~~g 79 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA-ELGERSMFVRHD-----VSSEADWTLVMAAVQRRLG 79 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-HHCTTEEEECCC-----TTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HhCCCeEEEEee-----cCCHHHHHHHHHHHHHHhC
Confidence 4577777887788444 44567788888876643333333344 445556666542 2356677777666655445
Q ss_pred ceeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 019899 97 KVRGILICNPANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 97 ~~~~i~~~~p~nptG~--~~~~~~l~~i~~~ 125 (334)
++..++-+......+. -.+.+++++..++
T Consensus 80 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~v 110 (253)
T d1hxha_ 80 TLNVLVNNAGILLPGDMETGRLEDFSRLLKI 110 (253)
T ss_dssp SCCEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CCCeEEecccccCCCCcccCCHHHHHHHHHH
Confidence 7784444433443333 3466677776664
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=83.00 E-value=4.7 Score=31.07 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=58.8
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCC----hhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPG----FDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQAR 92 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~----~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~ 92 (334)
+.+++.+|++.++=.. ...|.+.|.+|++..-.-.. ..+.++ ..|.++..+.++ --|.++++++++...
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~-~~g~~~~~~~~D-----vt~~~~v~~~~~~~~ 80 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK-KVGGEAIAVKGD-----VTVESDVINLVQSAI 80 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH-HTTCEEEEEECC-----TTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHH-hcCCcEEEEEcc-----CCCHHHHHHHHHHHH
Confidence 4577777877787554 45567788777765433211 122233 457777777753 235677777776655
Q ss_pred HcCCceeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 019899 93 KRGVKVRGILICNP-ANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 93 ~~~~~~~~i~~~~p-~nptG~--~~~~~~l~~i~~~ 125 (334)
++.+++..+ +.+. ....+. -.+.++++++.++
T Consensus 81 ~~~G~iDiL-VnnAG~~~~~~~~~~~~~~~~~~~~v 115 (261)
T d1geea_ 81 KEFGKLDVM-INNAGLENPVSSHEMSLSDWNKVIDT 115 (261)
T ss_dssp HHHSCCCEE-EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHhCCCCEe-eccceecCCcchhhcCHHHHHHHHHH
Confidence 544578844 4444 332222 3577777777763
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=82.93 E-value=4.6 Score=30.83 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=57.3
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
..+++.+|++.++=.. ...|.+.|.+|++..-.- .-.+..+ ..+...+.+++ -|.+++++.++...++.+
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~-~~~~~~~-~~~~~~~~~Dv-------~~~~~v~~~~~~~~~~~G 75 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP-EGKEVAE-AIGGAFFQVDL-------EDERERVRFVEEAAYALG 75 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-THHHHHH-HHTCEEEECCT-------TCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHH-HcCCeEEEEeC-------CCHHHHHHHHHHHHHhcC
Confidence 4566777777787444 456677888887765332 2234444 45666655554 356777777766655545
Q ss_pred ceeEEEEeCC-CCCcccC--CCHHHHHHHHHH
Q 019899 97 KVRGILICNP-ANPVGNI--IPRETLYELLDF 125 (334)
Q Consensus 97 ~~~~i~~~~p-~nptG~~--~~~~~l~~i~~~ 125 (334)
++. +++.|. .++.+.. .+.++++++.++
T Consensus 76 ~iD-iLVnnAG~~~~~~~~~~~~e~~~~~~~v 106 (248)
T d2d1ya1 76 RVD-VLVNNAAIAAPGSALTVRLPEWRRVLEV 106 (248)
T ss_dssp CCC-EEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CCC-eEEEeCcCCCCCChhhCCHHHHHHHHHh
Confidence 788 444444 3333332 466677776663
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.57 E-value=1.7 Score=33.55 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=59.1
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++=.. ...|.+.|-+|++..-.-.......+ ..|.++..++++- -|.++++++++....+-+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~-~~~~~~~~~~~Dv-----t~~~~v~~~~~~~~~~~g 78 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA-EIGPAACAIALDV-----TDQASIDRCVAELLDRWG 78 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH-HHCTTEEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HhCCceEEEEeeC-----CCHHHHHHHHHHHHHHhC
Confidence 4566777777777444 45567788777776533223333344 4566666666531 356777777776655545
Q ss_pred ceeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 019899 97 KVRGILICNP-ANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 97 ~~~~i~~~~p-~nptG~--~~~~~~l~~i~~~ 125 (334)
++. +++.+. ..+.+. -++.+++++..++
T Consensus 79 ~iD-ilVnnAg~~~~~~~~~~~~~~~~~~~~v 109 (256)
T d1k2wa_ 79 SID-ILVNNAALFDLAPIVEITRESYDRLFAI 109 (256)
T ss_dssp CCC-EEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred Ccc-EEEeecccccccccccCCHHHHHhhhce
Confidence 788 445544 333332 3466777777664
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=82.30 E-value=3.3 Score=31.57 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=58.6
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++=.. ...|.+.|.+|++..-.-.......+ ..+.+...+.++ --|.+++++.++....+-+
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~-~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g 77 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD-YLGANGKGLMLN-----VTDPASIESVLEKIRAEFG 77 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHGGGEEEEECC-----TTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HhCCCCcEEEEE-----ecCHHHhhhhhhhhhcccC
Confidence 4577777777788554 44567788888776543222333333 345555555542 2356777777777666556
Q ss_pred ceeEEEEeCC-CCCccc--CCCHHHHHHHHH
Q 019899 97 KVRGILICNP-ANPVGN--IIPRETLYELLD 124 (334)
Q Consensus 97 ~~~~i~~~~p-~nptG~--~~~~~~l~~i~~ 124 (334)
++..++ .+. ..+.+. -.+.+++++..+
T Consensus 78 ~iDilV-nnAg~~~~~~~~~~~~~~~~~~~~ 107 (243)
T d1q7ba_ 78 EVDILV-NNAGITRDNLLMRMKDEEWNDIIE 107 (243)
T ss_dssp SCSEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred Ccceeh-hhhhhccccccccccccccccccc
Confidence 788444 444 333333 346666766665
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| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=82.09 E-value=3.3 Score=31.88 Aligned_cols=101 Identities=12% Similarity=0.028 Sum_probs=57.6
Q ss_pred CcEEEecCcHHHHHH-HHHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEI-LCFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~-~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
+.+++.+|++.++=. +...|.+.|-+|++..-.-.......+ ..+.++..+.++ --|.+++++.++....+.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g 78 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR-ELGDAARYQHLD-----VTIEEDWQRVVAYAREEFG 78 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTGGGEEEEECC-----TTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HhCCceEEEEcc-----cCCHHHHHHHHHHHHHHcC
Confidence 456677777777744 445567788888776543333334444 455556666542 2356777777766655445
Q ss_pred ceeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 019899 97 KVRGILICNP-ANPVGN--IIPRETLYELLDF 125 (334)
Q Consensus 97 ~~~~i~~~~p-~nptG~--~~~~~~l~~i~~~ 125 (334)
++. +++.+. ..+.+. -.+.++++++.++
T Consensus 79 ~iD-ilVnnAg~~~~~~~~~~~~~~~~~~~~v 109 (254)
T d1hdca_ 79 SVD-GLVNNAGISTGMFLETESVERFRKVVEI 109 (254)
T ss_dssp CCC-EEEECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred Ccc-EEEecCccccccccccccccccchhhhH
Confidence 778 444444 333222 3466667666653
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| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.09 E-value=3.6 Score=31.54 Aligned_cols=100 Identities=10% Similarity=0.152 Sum_probs=55.4
Q ss_pred CcEEEecCcHHHHHHH-HHHhcCCCCeEEecCCCCCChhhhhhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHHcCC
Q 019899 18 SQIVLTAGATPAVEIL-CFCLADHGNALLVPSPYYPGFDRDIRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARKRGV 96 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~-~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~~~~ 96 (334)
..+++.+|++.++=.. ...|.+.|-+|++..-.-.......+ ..+ +...+.++ --|.+++++.++...++-+
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-~~~-~~~~~~~D-----vs~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ-ELP-GAVFILCD-----VTQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HCT-TEEEEECC-----TTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hcC-CCeEEEcc-----CCCHHHHHHHHHHHHHhcC
Confidence 4566666776677444 45567788888776533222222222 222 23444432 2356777777776655545
Q ss_pred ceeEEEEeCC-CC-Cccc--CCCHHHHHHHHHH
Q 019899 97 KVRGILICNP-AN-PVGN--IIPRETLYELLDF 125 (334)
Q Consensus 97 ~~~~i~~~~p-~n-ptG~--~~~~~~l~~i~~~ 125 (334)
++. +++.+. .. +.+. -.+.+++++..++
T Consensus 79 ~iD-ilVnnAG~~~~~~~~~~~~~~~~~~~~~v 110 (250)
T d1ydea1 79 RLD-CVVNNAGHHPPPQRPEETSAQGFRQLLEL 110 (250)
T ss_dssp CCC-EEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCC-EEEecccccccccccccccHHHHHHHHHH
Confidence 788 445544 33 3333 3577778777764
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| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.94 E-value=5.7 Score=30.41 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=59.2
Q ss_pred CcEEEecCcHHHHHHHH-HHhcCCCCeEEecCCCCCChhhh---hhhccCcEEEEEeCCCCCCccccHHHHHHHHHHHHH
Q 019899 18 SQIVLTAGATPAVEILC-FCLADHGNALLVPSPYYPGFDRD---IRFRTGVELIPVHCRSTDNFAFSITALDQAFNQARK 93 (334)
Q Consensus 18 ~~i~~~~g~~~~~~~~~-~~l~~~gd~vl~~~p~~~~~~~~---~~~~~g~~v~~v~~~~~~~~~~~~~~l~~~l~~~~~ 93 (334)
+.+++.+|++.++=..+ ..|.+.|-+|++..-.-...... ++ ..|.++..+.++ --|.+++++.++...+
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~-~~g~~~~~~~~D-----vs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ-QLGGQAFACRCD-----ITSEQELSALADFAIS 84 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH-HTTCCEEEEECC-----TTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-HcCCcEEEEEcc-----CCCHHHHHHHHHHHHH
Confidence 46778888888885554 45667888877765322222222 23 346667666653 1256677777666555
Q ss_pred cCCceeEEEEeCC-C-CCcccCCCHHHHHHHHHHH
Q 019899 94 RGVKVRGILICNP-A-NPVGNIIPRETLYELLDFA 126 (334)
Q Consensus 94 ~~~~~~~i~~~~p-~-nptG~~~~~~~l~~i~~~~ 126 (334)
+-+++. +++.+. . .+.-.-.+.++++++.++-
T Consensus 85 ~~g~iD-ilvnnAG~~~~~~~e~~~e~~~~~~~vN 118 (255)
T d1fmca_ 85 KLGKVD-ILVNNAGGGGPKPFDMPMADFRRAYELN 118 (255)
T ss_dssp HHSSCC-EEEECCCCCCCCCTTCCHHHHHHHHHHH
T ss_pred HcCCCC-EeeeCCcCCCCCcccCCHHHHHHHHHHH
Confidence 445788 444444 2 2222245777777777643
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