Citrus Sinensis ID: 019910

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MKVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSRGF
ccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccHHHHHHHHcccHHHHccccEEEEccccHHHHHHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHcccccEEEEEEEEccccc
ccEEEccccccEEEEEEHHHHHccccccccccccccccccccccHHHHHHHHHccccccccccccEEEEEEEcccccccccccHHHHHccccccccccccHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEccHcHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHccccccEEEcHHHHHcccHHHHHHHHHHccccHHcccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHccHHHHHHHHHHHcccc
mkvqrlpnskTKMAFAAIIMKKAFhsasgqlsnspqgicNVRMSGEELLSRLLDRkwaltspdskihQIKLFTttekhgggplggisflnntcpflgddmimrdedrcfyvvrddllhplvngnkarkMDALLPLledhivtdlvtcggcqsahATAVAVSCAERGLKShlllrgeqpqiltgynLISTIygkvtyvprthyAHRIEMLKSYANLvagnngdvvwCNEIFEASLTAQKSRASclgqmdahkgidncRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDagtgttavGLGLGAICLGCVPLFNTLLVKLSRGF
mkvqrlpnsktKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWAltspdskihqIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHlllrgeqpqilTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSRGF
MKVQRLPNSktkmafaaiimkkafHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFvvdagtgttavglglgaICLGCVPLFNTLLVKLSRGF
*************AFAAIIMKKAF************GICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL****
**************FAA*******************************LSRLLDRKWALTSPDSKIHQIK****************SFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKL****
*********KTKMAFAAIIMKKAFH********SPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSRGF
*KVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSRGF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiii
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MKVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFNTLLVKLSRGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
Q9WY68312 Putative 1-aminocycloprop yes no 0.491 0.525 0.282 6e-07
Q8U4R3329 Putative 1-aminocycloprop yes no 0.344 0.349 0.318 0.0002
Q9V2L2330 Putative 1-aminocycloprop yes no 0.314 0.318 0.317 0.0003
O57809325 Putative 1-aminocycloprop yes no 0.353 0.363 0.303 0.0008
>sp|Q9WY68|1A1D_THEMA Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0225 PE=3 SV=1 Back     alignment and function desciption
 Score = 55.5 bits (132), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 83/205 (40%), Gaps = 41/205 (20%)

Query: 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169
           YV RDDL   + +GNK RK++ LL        T + TCGG QS HA A A      GLK 
Sbjct: 27  YVKRDDLTELVGSGNKIRKLEYLLWEALKKGATTVFTCGGLQSNHARATAYVSRRYGLKP 86

Query: 170 HLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEI 229
            L LR +  ++L G  L+  + G                    A +V  +  +    +EI
Sbjct: 87  VLFLR-KGEKVLNGNLLLDILLG--------------------AEIVEVSPEEYERIDEI 125

Query: 230 FEASLTAQKSRASCLGQMDAHKGIDNCR-KKVLIVNEGAGDAVALLGVFRLLQYLSQDHL 288
           F                 D HK +   + +KV ++ EG  +++   G F  +  +     
Sbjct: 126 F-----------------DVHKKMREKKGEKVYVIPEGGSNSLGAFGYFNAVLEMKDQLN 168

Query: 289 LGRKRAIKFVVDAGTGTTAVGLGLG 313
           L    AI  V   G+G T  GL  G
Sbjct: 169 LESFDAI--VCAVGSGGTIAGLSAG 191

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)
EC: 3EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 7
>sp|Q8U4R3|1A1D_PYRFU Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0010 PE=3 SV=2 Back     alignment and function description
>sp|Q9V2L2|1A1D_PYRAB Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB00630 PE=3 SV=1 Back     alignment and function description
>sp|O57809|1A1D_PYRHO Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0054 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
11994254 572 unnamed protein product [Arabidopsis tha 0.916 0.534 0.560 3e-96
42565200427 Pyridoxal-5'-phosphate-dependent enzyme 0.916 0.716 0.560 1e-95
42572535433 Pyridoxal-5'-phosphate-dependent enzyme 0.916 0.706 0.560 2e-95
255547974 442 trytophan synthase alpha subunit, putati 0.886 0.669 0.598 5e-91
356538123432 PREDICTED: putative 1-aminocyclopropane- 0.865 0.668 0.558 3e-90
357463189 437 hypothetical protein MTR_3g086360 [Medic 0.850 0.649 0.556 9e-89
225424574 455 PREDICTED: putative 1-aminocyclopropane- 0.823 0.604 0.633 2e-88
224107725391 predicted protein [Populus trichocarpa] 0.781 0.667 0.692 2e-88
297814852408 hypothetical protein ARALYDRAFT_484377 [ 0.859 0.703 0.533 3e-88
296081397 488 unnamed protein product [Vitis vinifera] 0.823 0.563 0.633 3e-88
>gi|11994254|dbj|BAB01437.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 184/328 (56%), Positives = 229/328 (69%), Gaps = 22/328 (6%)

Query: 1   MKVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALT 60
           MKVQR     T +A         FHS+S ++  + +      +   E +S+LLDRKW L 
Sbjct: 146 MKVQR----STFLAVTGKSNLHHFHSSSQRIPITSE------IDSREFVSKLLDRKWGLQ 195

Query: 61  SPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPL 120
            P S I QI + +         +   SFLNNT P LGD+M    +   FY++RDDLLHPL
Sbjct: 196 CPASPIQQISVSSVK------GIDKFSFLNNTRPHLGDEMSKSKQGSSFYILRDDLLHPL 249

Query: 121 VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQI 180
           VNGNKARK+DALLPL+EDH VTDLVTCGGCQSAH  AVAVSCAERGL+SHLLLRGEQP +
Sbjct: 250 VNGNKARKLDALLPLVEDHKVTDLVTCGGCQSAHTAAVAVSCAERGLRSHLLLRGEQPDV 309

Query: 181 LTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSR 240
           LTGYNL+ST+YG V YVPR+ YA+R EML++YA+LVAG +G V+W  +I E   T     
Sbjct: 310 LTGYNLVSTMYGNVQYVPRSRYANREEMLRTYADLVAGEDGTVLWAKDIVEGRDTMN--- 366

Query: 241 ASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVD 300
              + +MD    +   R+KVLIVNEGAGDA+ALLG+FRL+Q+LSQDHLLG+KR +KFVVD
Sbjct: 367 ---VAKMDDFSSMKTSRRKVLIVNEGAGDALALLGMFRLVQHLSQDHLLGKKRPVKFVVD 423

Query: 301 AGTGTTAVGLGLGAICLGCVPLFNTLLV 328
           AGTGTTAVGLG+ A+ LG     N +++
Sbjct: 424 AGTGTTAVGLGVAAMSLGLPWEINAVML 451

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|42565200|ref|NP_189241.3| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] gi|119935856|gb|ABM06014.1| At3g26115 [Arabidopsis thaliana] gi|332643599|gb|AEE77120.1| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42572535|ref|NP_974363.1| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] gi|110737454|dbj|BAF00671.1| hypothetical protein [Arabidopsis thaliana] gi|332643600|gb|AEE77121.1| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255547974|ref|XP_002515044.1| trytophan synthase alpha subunit, putative [Ricinus communis] gi|223546095|gb|EEF47598.1| trytophan synthase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356538123|ref|XP_003537554.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Glycine max] Back     alignment and taxonomy information
>gi|357463189|ref|XP_003601876.1| hypothetical protein MTR_3g086360 [Medicago truncatula] gi|355490924|gb|AES72127.1| hypothetical protein MTR_3g086360 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225424574|ref|XP_002282104.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224107725|ref|XP_002314578.1| predicted protein [Populus trichocarpa] gi|222863618|gb|EEF00749.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297814852|ref|XP_002875309.1| hypothetical protein ARALYDRAFT_484377 [Arabidopsis lyrata subsp. lyrata] gi|297321147|gb|EFH51568.1| hypothetical protein ARALYDRAFT_484377 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|296081397|emb|CBI16830.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2090345 433 AT3G26115 [Arabidopsis thalian 0.727 0.561 0.611 1.6e-77
TAIR|locus:2090345 AT3G26115 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 156/255 (61%), Positives = 190/255 (74%)

Query:    43 MSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIM 102
             +   E +S+LLDRKW L  P S I QI + +     G   +   SFLNNT P LGD+M  
Sbjct:    33 IDSREFVSKLLDRKWGLQCPASPIQQISVSSVK---G---IDKFSFLNNTRPHLGDEMSK 86

Query:   103 RDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSC 162
               +   FY++RDDLLHPLVNGNKARK+DALLPL+EDH VTDLVTCGGCQSAH  AVAVSC
Sbjct:    87 SKQGSSFYILRDDLLHPLVNGNKARKLDALLPLVEDHKVTDLVTCGGCQSAHTAAVAVSC 146

Query:   163 AERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGD 222
             AERGL+SHLLLRGEQP +LTGYNL+ST+YG V YVPR+ YA+R EML++YA+LVAG +G 
Sbjct:   147 AERGLRSHLLLRGEQPDVLTGYNLVSTMYGNVQYVPRSRYANREEMLRTYADLVAGEDGT 206

Query:   223 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQY 282
             V+W  +I E   T        + +MD    +   R+KVLIVNEGAGDA+ALLG+FRL+Q+
Sbjct:   207 VLWAKDIVEGRDTMN------VAKMDDFSSMKTSRRKVLIVNEGAGDALALLGMFRLVQH 260

Query:   283 LSQDHLLGRKRAIKF 297
             LSQDHLLG+KR +KF
Sbjct:   261 LSQDHLLGKKRPVKF 275


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      334       302   0.00097  115 3  11 22  0.50    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  214 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.89u 0.08s 23.97t   Elapsed:  00:00:01
  Total cpu time:  23.89u 0.08s 23.97t   Elapsed:  00:00:01
  Start:  Fri May 10 14:10:25 2013   End:  Fri May 10 14:10:26 2013
GO:0003824 "catalytic activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0008152 "metabolic process" evidence=IEA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
COG2515 323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 2e-15
TIGR01275 318 TIGR01275, ACC_deam_rel, pyridoxal phosphate-depen 5e-10
PRK03910331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 1e-09
cd06449307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 1e-08
PRK14045 329 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxyl 3e-06
TIGR01274337 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxy 2e-04
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information 
 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 56/208 (26%), Positives = 76/208 (36%), Gaps = 42/208 (20%)

Query: 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168
            Y+ RDDL      GNK RK++ LL          LVT GG QS H    A   A+ GLK
Sbjct: 32  IYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAAKLGLK 91

Query: 169 SHLLLRGEQPQILTGYN-LISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCN 227
             L+L   +   L   N L+S + G                    A + A + G  +  N
Sbjct: 92  CVLILENIEANYLLNGNLLLSKLMG--------------------AEVRAVDAGTDIGIN 131

Query: 228 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRL-LQYLSQD 286
              E      + +                  K  ++ EG    +  LG  RL L+   Q 
Sbjct: 132 ASAEELAEEVRKQG----------------GKPYVIPEGGSSPLGALGYVRLALEIAEQA 175

Query: 287 HLLGRKRAIKFVVDA-GTGTTAVGLGLG 313
             L +      VV A G+G T  GL +G
Sbjct: 176 EQLLK---FDSVVVAPGSGGTHAGLLVG 200

Length = 323
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|172537 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
COG2515 323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 100.0
PRK03910 331 D-cysteine desulfhydrase; Validated 100.0
TIGR01275 311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 100.0
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 100.0
PRK14045 329 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
TIGR01274 337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 100.0
PRK12390 337 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
PRK08197 394 threonine synthase; Validated 100.0
PRK07591 421 threonine synthase; Validated 100.0
PRK06352 351 threonine synthase; Validated 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
PRK04346 397 tryptophan synthase subunit beta; Validated 100.0
PRK06381 319 threonine synthase; Validated 100.0
PRK06260 397 threonine synthase; Validated 100.0
PRK08329347 threonine synthase; Validated 100.0
cd01563 324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
COG1171 347 IlvA Threonine dehydratase [Amino acid transport a 100.0
PRK06721 352 threonine synthase; Reviewed 100.0
PRK05638 442 threonine synthase; Validated 100.0
PRK10717 330 cysteine synthase A; Provisional 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
PLN02618 410 tryptophan synthase, beta chain 100.0
cd06448 316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
PRK07409 353 threonine synthase; Validated 100.0
PRK13803 610 bifunctional phosphoribosylanthranilate isomerase/ 100.0
PRK13028 402 tryptophan synthase subunit beta; Provisional 100.0
PRK07476 322 eutB threonine dehydratase; Provisional 100.0
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
PRK06110 322 hypothetical protein; Provisional 100.0
PLN00011 323 cysteine synthase 100.0
TIGR00263 385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
PRK08526 403 threonine dehydratase; Provisional 100.0
PRK12483 521 threonine dehydratase; Reviewed 99.98
PLN02569 484 threonine synthase 99.98
PRK11761296 cysM cysteine synthase B; Provisional 99.98
PRK13802 695 bifunctional indole-3-glycerol phosphate synthase/ 99.98
TIGR02991 317 ectoine_eutB ectoine utilization protein EutB. Mem 99.98
PLN02556 368 cysteine synthase/L-3-cyanoalanine synthase 99.98
TIGR01127 380 ilvA_1Cterm threonine dehydratase, medium form. A 99.98
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 99.98
PRK08198 404 threonine dehydratase; Provisional 99.98
PRK06382 406 threonine dehydratase; Provisional 99.98
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 99.98
PRK06450338 threonine synthase; Validated 99.98
TIGR00260 328 thrC threonine synthase. Involved in threonine bio 99.98
PLN02970 328 serine racemase 99.97
PRK07048 321 serine/threonine dehydratase; Validated 99.97
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 99.97
PLN02550 591 threonine dehydratase 99.97
PRK09224 504 threonine dehydratase; Reviewed 99.97
PRK06608 338 threonine dehydratase; Provisional 99.97
TIGR02079 409 THD1 threonine dehydratase. This model represents 99.97
PRK08638 333 threonine dehydratase; Validated 99.97
PRK06815 317 hypothetical protein; Provisional 99.97
PLN02565 322 cysteine synthase 99.97
PRK07334 403 threonine dehydratase; Provisional 99.97
PRK08639 420 threonine dehydratase; Validated 99.97
KOG1250 457 consensus Threonine/serine dehydratases [Amino aci 99.97
PRK02991 441 D-serine dehydratase; Provisional 99.97
PLN03013 429 cysteine synthase 99.97
cd06447 404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 99.97
TIGR01415 419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 99.97
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 99.97
PLN02356 423 phosphateglycerate kinase 99.97
PRK08246 310 threonine dehydratase; Provisional 99.97
PRK08206 399 diaminopropionate ammonia-lyase; Provisional 99.97
cd06446 365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 99.97
KOG1251 323 consensus Serine racemase [Signal transduction mec 99.96
TIGR01747 376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 99.96
TIGR03528 396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 99.96
PRK08813 349 threonine dehydratase; Provisional 99.96
PRK12391 427 tryptophan synthase subunit beta; Reviewed 99.96
TIGR02035 431 D_Ser_am_lyase D-serine ammonia-lyase. This family 99.96
TIGR03844 398 cysteate_syn cysteate synthase. Members of this fa 99.96
COG0133 396 TrpB Tryptophan synthase beta chain [Amino acid tr 99.95
COG0031300 CysK Cysteine synthase [Amino acid transport and m 99.95
COG0498 411 ThrC Threonine synthase [Amino acid transport and 99.92
KOG1252 362 consensus Cystathionine beta-synthase and related 99.85
KOG1395 477 consensus Tryptophan synthase beta chain [Amino ac 99.83
KOG1481 391 consensus Cysteine synthase [Amino acid transport 99.78
PRK09225 462 threonine synthase; Validated 99.6
cd01560 460 Thr-synth_2 Threonine synthase catalyzes the final 99.54
COG1350 432 Predicted alternative tryptophan synthase beta-sub 99.5
COG3048 443 DsdA D-serine dehydratase [Amino acid transport an 98.57
PRK15408336 autoinducer 2-binding protein lsrB; Provisional 91.85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-43  Score=330.75  Aligned_cols=216  Identities=26%  Similarity=0.258  Sum_probs=183.2

Q ss_pred             CceeecccccccccCCCCCCCcccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCE
Q 019910           64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD  143 (334)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~  143 (334)
                      ++.++.+|.+.     |   +||+++++++         +..|.+|||||||++++.+||||+|||++++.+|...|+++
T Consensus         4 ~rf~R~~l~~~-----p---TPiq~L~rls---------~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dT   66 (323)
T COG2515           4 SRFPRMELIFG-----P---TPIQKLPRLS---------AHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADT   66 (323)
T ss_pred             ccCCccccCCC-----C---ChhhhHHHHH---------HhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcE
Confidence            35677777775     3   5678887764         44579999999999999899999999999999999999999


Q ss_pred             EEEeCCccchHHHHHHHHHHHhCCeEEEEeCCCC-CccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCC
Q 019910          144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNG  221 (334)
Q Consensus       144 VVt~Gg~qsNh~~AvAaaaa~~Gl~~~ivv~~~~-p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g  221 (334)
                      +||+||+||||..++|++|+++|++|++++++.. .-...||.++++++| ++++++.+.+...+...++          
T Consensus        67 lvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~----------  136 (323)
T COG2515          67 LVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEE----------  136 (323)
T ss_pred             EEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHH----------
Confidence            9999999999999999999999999999999855 114678999999999 9999998764422222221          


Q ss_pred             CccchhhhhhhhHhhhhhhcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcC
Q 019910          222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDA  301 (334)
Q Consensus       222 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~  301 (334)
                                                 .++++..++.+||+||+||+||.+.+||++++.||.+|.+.- ..+|.|||++
T Consensus       137 ---------------------------~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~-~~fD~vVva~  188 (323)
T COG2515         137 ---------------------------LAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQL-LKFDSVVVAP  188 (323)
T ss_pred             ---------------------------HHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhc-cCCCEEEEeC
Confidence                                       123355668899999999999999999999999999987521 4699999999


Q ss_pred             CchhHHHHHHHHHHHcCCCCeEEEEEeccCCCC
Q 019910          302 GTGTTAVGLGLGAICLGCVPLFNTLLVKLSRGF  334 (334)
Q Consensus       302 GtGgt~aGl~~g~k~lg~~~~VigV~~~gs~~~  334 (334)
                      |||||.||++.|+..++++++||||.++++..|
T Consensus       189 gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~  221 (323)
T COG2515         189 GSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEK  221 (323)
T ss_pred             CCcchHHHHHHHhhhccCCCceEEEeecCCHHH
Confidence            999999999999999999999999999988653

>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15408 autoinducer 2-binding protein lsrB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1j0a_A325 Crystal Structure Analysis Of The Acc Deaminase Hom 5e-05
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue Length = 325 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 86  ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLV 145
           I +L N    +G D+         Y+ RDDL    + GNK RK++ LL          ++
Sbjct: 24  IQYLPNISREIGADV---------YIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVI 74
Query: 146 TCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHR 205
           T G   S HA    ++  + GL + L+LRG++   L G  L+  I G  T   R + A  
Sbjct: 75  TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEE--LKGNYLLDKIMGIET---RVYDAKD 129
Query: 206 IEMLKSYANLVA 217
              L  YA  +A
Sbjct: 130 SFELMKYAEEIA 141

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
4d9b_A 342 D-cysteine desulfhydrase; fold type II PLP-depende 5e-17
1j0a_A 325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 2e-16
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 1e-14
1f2d_A 341 1-aminocyclopropane-1-carboxylate deaminase; carbo 1e-14
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
 Score = 79.7 bits (196), Expect = 5e-17
 Identities = 38/212 (17%), Positives = 62/212 (29%), Gaps = 34/212 (16%)

Query: 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169
           Y+ RDD+    + GNK RK++ L+          L+T G  QS H    A   A+ GL  
Sbjct: 50  YIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHC 109

Query: 170 HLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEI 229
             LL          Y           +  +      +               D     + 
Sbjct: 110 VALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT--------------DPDAQLQT 155

Query: 230 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLL 289
               + AQ                     +  ++  G   A+  +G       ++Q    
Sbjct: 156 LATRIEAQG-------------------FRPYVIPVGGSSALGAMGYVESALEIAQQCEE 196

Query: 290 GRKRAIKFVVDAGTGTTAVGLGLGAICLGCVP 321
               +   VV +G+  T  GL +G   L    
Sbjct: 197 VVGLS-SVVVASGSAGTHAGLAVGLEHLMPDV 227
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
4d9b_A 342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
1j0a_A 325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
1f2d_A 341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
1tzj_A 338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 100.0
3aey_A 351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
4h27_A 364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
2d1f_A 360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
2zsj_A 352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
1p5j_A 372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
2pqm_A 343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
4aec_A 430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
3l6b_A 346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
3dwg_A 325 Cysteine synthase B; sulfur carrier protein comple 100.0
3tbh_A 334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
2rkb_A 318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
1y7l_A 316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
1z7w_A 322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
2gn0_A 342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
1x1q_A 418 Tryptophan synthase beta chain; structural genomic 100.0
1ve5_A 311 Threonine deaminase; riken structural genomics/Pro 100.0
1qop_B 396 Tryptophan synthase beta chain; lyase, carbon-oxyg 100.0
3ss7_X 442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
1v71_A 323 Serine racemase, hypothetical protein C320.14 in c 99.98
3vc3_A 344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 99.98
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 99.98
1v8z_A 388 Tryptophan synthase beta chain 1; beta+alpha, rike 99.97
4d9i_A 398 Diaminopropionate ammonia-lyase; fold type II PLP- 99.97
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 99.97
2o2e_A 422 Tryptophan synthase beta chain; amino-acid biosynt 99.97
1jbq_A 435 B, cystathionine beta-synthase, serine sulfhydrase 99.97
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 99.97
1e5x_A 486 Threonine synthase; threonine biosynthesis, PLP en 99.97
3iau_A 366 Threonine deaminase; pyridoxal phosphate, amino-ac 99.97
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 99.97
1vb3_A 428 Threonine synthase; PLP-dependent enzyme, lyase; H 99.9
1kl7_A 514 Threonine synthase; threonine synthesis, pyridoxal 99.81
4f4f_A 468 Threonine synthase; structural genomics, niaid, na 99.8
3v7n_A 487 Threonine synthase; ssgcid, structural genomics, s 99.76
3l49_A291 ABC sugar (ribose) transporter, periplasmic substr 85.91
3g1w_A305 Sugar ABC transporter; sugar-binding protein, baci 80.92
3ipc_A 356 ABC transporter, substrate binding protein (amino; 80.26
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-39  Score=313.74  Aligned_cols=208  Identities=21%  Similarity=0.227  Sum_probs=175.3

Q ss_pred             ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHh
Q 019910           86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAER  165 (334)
Q Consensus        86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~  165 (334)
                      +....+-||++..+.|++..|.+||+||||+|++.+||||+|++.+++.+++++|.++||++||++|||++|+|++|+++
T Consensus        26 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~~~vv~~s~tsGN~g~alA~aa~~~  105 (342)
T 4d9b_A           26 LEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKL  105 (342)
T ss_dssp             CCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHH
T ss_pred             ccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHHHHHHh
Confidence            45566779999998888888899999999997655699999999999999999999999999877999999999999999


Q ss_pred             CCeEEEEeCCCCCcc-----ccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhh
Q 019910          166 GLKSHLLLRGEQPQI-----LTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKS  239 (334)
Q Consensus       166 Gl~~~ivv~~~~p~~-----~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~  239 (334)
                      |++|++|||.+.|..     ..+|+.+++.|| +|+.+++..  ++++..+..++                         
T Consensus       106 G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~a~-------------------------  158 (342)
T 4d9b_A          106 GLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT--DPDAQLQTLAT-------------------------  158 (342)
T ss_dssp             TCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCS--SHHHHHHHHHH-------------------------
T ss_pred             CCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchh--hHHHHHHHHHH-------------------------
Confidence            999999999988753     136888999999 999998752  22233222111                         


Q ss_pred             hcccccchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCC
Q 019910          240 RASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGC  319 (334)
Q Consensus       240 ~~~~~~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~  319 (334)
                                  ++..+.+++|++|.++.||.+..||.+++.||.+|+... ..+|+||+|+|||||++|++.+++.+++
T Consensus       159 ------------~l~~~~~~~~~~p~~~~n~~~~~G~~t~~~EI~~q~~~~-~~~d~vv~~vGtGGt~aGi~~~~k~~~~  225 (342)
T 4d9b_A          159 ------------RIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEV-VGLSSVVVASGSAGTHAGLAVGLEHLMP  225 (342)
T ss_dssp             ------------HHHHTTCCEEECCGGGCSHHHHHHHHHHHHHHHHHHTTT-CCCCEEEEEESSSHHHHHHHHHHHHHCT
T ss_pred             ------------HHHhcCCceEEeCCCCCChHHHHHHHHHHHHHHHHHhcc-CCCCEEEEeCCCCHHHHHHHHHHHhhCC
Confidence                        123345578999999999999999999999999998311 3699999999999999999999999999


Q ss_pred             CCeEEEEEeccCCC
Q 019910          320 VPLFNTLLVKLSRG  333 (334)
Q Consensus       320 ~~~VigV~~~gs~~  333 (334)
                      .++||||++.++..
T Consensus       226 ~~~vigVe~~~~~~  239 (342)
T 4d9b_A          226 DVELIGVTVSRSVA  239 (342)
T ss_dssp             TSEEEEEESSSCHH
T ss_pred             CCeEEEEEecCcHH
Confidence            99999999998753
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 334
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 4e-06
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 6e-06
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 1e-04
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 110 YVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168
           Y  R+D    L   GNK RK++ L+P         LV+ GG QS     VA   A  G+K
Sbjct: 35  YAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMK 94

Query: 169 SHLLLRGEQPQ 179
             L+       
Sbjct: 95  CVLVQENWVNY 105
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d1j0aa_ 325 1-aminocyclopropane-1-carboxylate deaminase {Archa 99.97
d1p5ja_ 319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 99.97
d1jbqa_ 355 Cystathionine beta-synthase {Human (Homo sapiens) 99.97
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.97
d1qopb_ 390 Tryptophan synthase, beta-subunit {Salmonella typh 99.97
d1z7wa1 320 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.97
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.97
d1f2da_ 341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 99.96
d1tdja1 331 Threonine deaminase {Escherichia coli [TaxId: 562] 99.96
d1v8za1 386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 99.96
d1v71a1 318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 99.96
d1tyza_ 338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 99.96
d1y7la1 310 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.96
d1v7ca_ 351 Threonine synthase {Thermus thermophilus [TaxId: 2 99.96
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.95
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.95
d1ve5a1 310 Threonine deaminase {Thermus thermophilus [TaxId: 99.95
d1e5xa_ 477 Threonine synthase {Mouse-ear cress (Arabidopsis t 99.95
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 99.95
d1vb3a1 428 Threonine synthase {Escherichia coli [TaxId: 562]} 98.9
d1kl7a_ 511 Threonine synthase {Baker's yeast (Saccharomyces c 95.47
d3etja278 N5-carboxyaminoimidazole ribonucleotide synthetase 84.54
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=6.7e-32  Score=251.35  Aligned_cols=206  Identities=23%  Similarity=0.264  Sum_probs=165.9

Q ss_pred             ccccCCCCcCCCCCccccCCCCeEEEEeCCCCCCCChhHHHHHHHhhhHHHHhcCCCEEEEeCCccchHHHHHHHHHHHh
Q 019910           86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAER  165 (334)
Q Consensus        86 ~~~~~~~Tp~l~~~~l~~~~g~~lyvKrDDl~~p~~gGnK~RkL~~lL~~a~~~g~~~VVt~Gg~qsNh~~AvAaaaa~~  165 (334)
                      +++..+-||++..++|++..|.+||+||||++|+.+||||+|++.+++..+.+.|.+.++++++++|||+.|+|++|+.+
T Consensus        15 i~l~~~~TPL~~~~~L~~~~G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~~~~~~~~~s~gN~g~a~A~~a~~~   94 (325)
T d1j0aa_          15 VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKL   94 (325)
T ss_dssp             CCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHT
T ss_pred             ccCCCCCCceeEHHHhHHHHCCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCCCeeEEEeeCcchHHHHHHHHHhhh
Confidence            56677789999999999999999999999998766899999999999999999999999988888999999999999999


Q ss_pred             CCeEEEEeCCCCCccccchhHHHHHCC-eEEEECCCChHHHHHHHHHHHHHHhccCCCccchhhhhhhhHhhhhhhcccc
Q 019910          166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCL  244 (334)
Q Consensus       166 Gl~~~ivv~~~~p~~~~gn~~~~~~~G-~V~~v~~~~y~~~~~~~~~~a~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~  244 (334)
                      |++|++|+|...+..+.  ..+....+ .+..++...........+..+                               
T Consensus        95 g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------------------------  141 (325)
T d1j0aa_          95 GLDAILVLRGKEELKGN--YLLDKIMGIETRVYDAKDSFELMKYAEEIA-------------------------------  141 (325)
T ss_dssp             TCEEEEEEESCCCSCHH--HHHHHHTTCEEEEESCCSTTTHHHHHHHHH-------------------------------
T ss_pred             cCceEEEeecccccchh--hhhccccceeEEeccCcccccchHHHHHHH-------------------------------
Confidence            99999999997765433  23344444 443443322222222222111                               


Q ss_pred             cchhhhhccccccCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCEEEEcCCchhHHHHHHHHHHHcCCCCeEE
Q 019910          245 GQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGCVPLFN  324 (334)
Q Consensus       245 ~~~~~~~~l~~~~~~~y~IpeGgs~p~a~~G~~~la~EI~eq~~~g~~~~D~Vvvp~GtGgt~aGl~~g~k~lg~~~~Vi  324 (334)
                            .........++++++++.++....|+..++.|+.+|.  + ..+|+||+|+|||++++|+..+++..+++++|+
T Consensus       142 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~-~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~  212 (325)
T d1j0aa_         142 ------EELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQS--E-VKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPV  212 (325)
T ss_dssp             ------HHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHC--C-CCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEE
T ss_pred             ------HHHHhhccCceeeecCCCccccccccchhhccccccc--c-cccceeecccccchhhhhHHHHHHhhCcccccc
Confidence                  1123346678889999999999999999999999886  3 468999999999999999999999999999999


Q ss_pred             EEEeccCCC
Q 019910          325 TLLVKLSRG  333 (334)
Q Consensus       325 gV~~~gs~~  333 (334)
                      +|++.++..
T Consensus       213 ~v~~~~~~~  221 (325)
T d1j0aa_         213 GIAVGRFGE  221 (325)
T ss_dssp             EEECSSCSS
T ss_pred             ccccccchh
Confidence            999988765
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure