Citrus Sinensis ID: 019918

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
cccccEEEEEEcccccccEEEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHccccccccEEEEEEcccEEEccccccccHHHHHHccccccccccccccccccccc
ccHHHHHHHHcccccccccEEEcHEHHHHHHHHcHHHcccccccccEccccccccccccccccHHcccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccEEEHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHccEEEEEEccccccccccccHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHccccccccEEEEEEcccEEEccccccccHHHHHHHcccHHHHHcccccccccccc
MASVLHFSYIlgpvgsgrgycncqyhASRFCRQILNKyrsrttpglsislplhstwtakrsplcsnitcsatdrsdpeisSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGAlanparaadvpEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLklrvdekkiisVNNLRGIARLVICSgpasyimesfkrsepfteSLLERGVLVVSfttdgnipsfefeeSEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEqkrtagispespvYLSLRLdgrvrgsgvgyppwnafvaqlppvkgiwsglldgmdgrvl
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLhstwtakrsplcSNITcsatdrsdpeissAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAqlarlsreeslsnlklrvdekkiisvnnlrgiaRLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTdgnipsfefeeseemKEFTrkrkrlwqltpvyvsewskwLDEQkrtagispespvylSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGlldgmdgrvl
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPsfefeeseeMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
***VLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCS*************RIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSR********************LKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFE**********TRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLD*******
****LHFSYILGPVGSGRGYCNCQYHASRFCRQILN**************************************************NEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRE*********************LRVD*KKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGN*********************LWQLTPVYVSEWSKWLDEQK******PE*PVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCS*********SSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFE************KRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
*ASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRS*TTPGLSISLP**************************EISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSF*FE**********KRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDG***
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MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
224129560300 predicted protein [Populus trichocarpa] 0.853 0.95 0.756 1e-124
359480082328 PREDICTED: uncharacterized protein LOC10 0.754 0.768 0.809 1e-119
297744261346 unnamed protein product [Vitis vinifera] 0.754 0.728 0.809 1e-119
388514469334 unknown [Lotus japonicus] 0.904 0.904 0.697 1e-116
356548113326 PREDICTED: uncharacterized protein LOC10 0.826 0.846 0.747 1e-115
449468602338 PREDICTED: uncharacterized protein LOC10 0.802 0.792 0.740 1e-114
255560289331 conserved hypothetical protein [Ricinus 0.808 0.815 0.805 1e-112
449530478254 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.760 1.0 0.744 1e-108
297803184328 hypothetical protein ARALYDRAFT_913640 [ 0.895 0.911 0.643 1e-108
18417257347 uncharacterized protein [Arabidopsis tha 0.832 0.801 0.672 1e-107
>gi|224129560|ref|XP_002320616.1| predicted protein [Populus trichocarpa] gi|222861389|gb|EEE98931.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/287 (75%), Positives = 252/287 (87%), Gaps = 2/287 (0%)

Query: 49  SLPLHSTWTAKRSPLCSNITCSATDRSDP--EISSAARIRNEVLSPFRSVRMFFYLAFVA 106
           +L  H     ++S   S ITCSA ++  P  E+SS A+IR+EVLSPFR+VRMFFYLAF+A
Sbjct: 14  NLTQHMLSCKRQSCSTSTITCSAANKPSPSTEVSSTAKIRSEVLSPFRTVRMFFYLAFLA 73

Query: 107 SGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLAR 166
           SG+LGGLIA T+LI ALANP+RAA+VPEILKGL ID+ A ++FAFLY RENKAKN QLAR
Sbjct: 74  SGALGGLIATTRLIAALANPSRAAEVPEILKGLGIDIGAAAIFAFLYYRENKAKNVQLAR 133

Query: 167 LSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGV 226
           LSREE+LSNLKLRVDEKKIISV++LRG+ARLVIC+GPA +I+ESFK SEPFT+SLL+RGV
Sbjct: 134 LSREENLSNLKLRVDEKKIISVSSLRGVARLVICAGPAPFILESFKLSEPFTQSLLDRGV 193

Query: 227 LVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPES 286
           LVV F ++GN+PSFEF+E EEMKE T KRKRLWQL P+YVSEWS WLDEQK+ AG+SPES
Sbjct: 194 LVVPFASNGNLPSFEFDEGEEMKELTTKRKRLWQLAPIYVSEWSNWLDEQKKLAGVSPES 253

Query: 287 PVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRV 333
           PVYLSLR+DGRVRGSGVGYPPWNAFVAQLPP KG+WSGLLDGMDGRV
Sbjct: 254 PVYLSLRMDGRVRGSGVGYPPWNAFVAQLPPSKGMWSGLLDGMDGRV 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480082|ref|XP_002267644.2| PREDICTED: uncharacterized protein LOC100253269 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744261|emb|CBI37231.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388514469|gb|AFK45296.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356548113|ref|XP_003542448.1| PREDICTED: uncharacterized protein LOC100799768 [Glycine max] Back     alignment and taxonomy information
>gi|449468602|ref|XP_004152010.1| PREDICTED: uncharacterized protein LOC101206246 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255560289|ref|XP_002521162.1| conserved hypothetical protein [Ricinus communis] gi|223539731|gb|EEF41313.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449530478|ref|XP_004172222.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223919, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|297803184|ref|XP_002869476.1| hypothetical protein ARALYDRAFT_913640 [Arabidopsis lyrata subsp. lyrata] gi|297315312|gb|EFH45735.1| hypothetical protein ARALYDRAFT_913640 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18417257|ref|NP_567817.1| uncharacterized protein [Arabidopsis thaliana] gi|332660136|gb|AEE85536.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2117803347 AT4G28740 "AT4G28740" [Arabido 0.832 0.801 0.661 8.4e-97
TAIR|locus:2024720453 LPA1 "LOW PSII ACCUMULATION1" 0.437 0.322 0.301 1e-26
TAIR|locus:2117803 AT4G28740 "AT4G28740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 186/281 (66%), Positives = 228/281 (81%)

Query:    55 TWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLI 114
             T T K+ PL  N  C A D    EIS+ ARIR+EVLSPFRSVRMFFYLAF+ASGSLGGLI
Sbjct:    68 TITRKQQPLSFNTVCFAADEPS-EISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLI 126

Query:   115 AITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLS 174
             A ++LIGALANPAR+ +V EI+KGL +D+ A SLFAFLY  ENK KNAQ+ARLSREE+L 
Sbjct:   127 ATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNENKTKNAQMARLSREENLG 186

Query:   175 NLKLRVDEK-KIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTT 233
              LK+RV+E  K+ISV +LRG+ARLVIC+GPA +I E+FKRS+ +T+ L+ERGV+VV++ T
Sbjct:   187 KLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVVVAYAT 246

Query:   234 DGNIPXXXXXXXXXM-KEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSL 292
             DGN P           +E +++RK+LW++TPV+V EW KWL+EQK+ A +S +SPVYLSL
Sbjct:   247 DGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEKWLNEQKKLANVSSDSPVYLSL 306

Query:   293 RLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRV 333
             RLDGRVR SGVGYPPW AFVAQLPPVKG+W+GLLDGMDGRV
Sbjct:   307 RLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347
GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=IDA
GO:0009658 "chloroplast organization" evidence=IMP
GO:0006098 "pentose-phosphate shunt" evidence=RCA
TAIR|locus:2024720 LPA1 "LOW PSII ACCUMULATION1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
PLN03098453 PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisiona 6e-43
pfam1199875 pfam11998, DUF3493, Protein of unknown function (D 1e-18
>gnl|CDD|215573 PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information 
 Score =  153 bits (388), Expect = 6e-43
 Identities = 85/263 (32%), Positives = 140/263 (53%), Gaps = 25/263 (9%)

Query: 87  NEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAV 146
           +EV +PFR VR FFY+AF A+  +     + +LI A+     A DV E     +I++  +
Sbjct: 190 SEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGI 249

Query: 147 SLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASY 206
             F  L+  ENK +  Q+++++R+E+LS L +R+   +I+ +  LR I R VI +G    
Sbjct: 250 VAFVSLFLWENKKEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKES 309

Query: 207 IMESFKRSEPFTESLLERGVLVV-------------------SFTTDGNIPSF--EFE-- 243
           +  + +++E +   LL+RGVL++                   S     ++PS   +FE  
Sbjct: 310 VTLAMQKAERYRTELLKRGVLLIPVVWGENKDPQPKKKGFGRSSKAAASLPSIGDDFEKR 369

Query: 244 -ESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSG 302
            +S   K   +  KR ++   V  +EW +W+ +Q+ + G++P   VY+ LRLDGRVR SG
Sbjct: 370 AQSAAAKSVLKGEKR-FKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSG 428

Query: 303 VGYPPWNAFVAQLPPVKGIWSGL 325
            G P W   V +LPP+  + S L
Sbjct: 429 RGMPEWQEIVKELPPLDSLLSKL 451

Length = 453
>gnl|CDD|192909 pfam11998, DUF3493, Protein of unknown function (DUF3493) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 100.0
PF1199875 DUF3493: Protein of unknown function (DUF3493); In 99.95
PF13778118 DUF4174: Domain of unknown function (DUF4174) 96.14
PRK03147173 thiol-disulfide oxidoreductase; Provisional 93.79
PF08534146 Redoxin: Redoxin; InterPro: IPR013740 This redoxin 93.68
PRK09437154 bcp thioredoxin-dependent thiol peroxidase; Review 92.96
cd03018149 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik 91.45
cd03017140 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit 91.42
cd02968142 SCO SCO (an acronym for Synthesis of Cytochrome c 90.26
PTZ00056199 glutathione peroxidase; Provisional 89.83
cd02964132 TryX_like_family Tryparedoxin (TryX)-like family; 88.46
PLN02412167 probable glutathione peroxidase 87.19
PF0630568 DUF1049: Protein of unknown function (DUF1049); In 86.07
cd02971140 PRX_family Peroxiredoxin (PRX) family; composed of 85.58
cd03015173 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- 83.63
cd03012126 TlpA_like_DipZ_like TlpA-like family, DipZ-like su 82.1
PTZ00256183 glutathione peroxidase; Provisional 81.83
TIGR02540153 gpx7 putative glutathione peroxidase Gpx7. This mo 80.53
cd00340152 GSH_Peroxidase Glutathione (GSH) peroxidase family 80.39
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-82  Score=633.58  Aligned_cols=250  Identities=32%  Similarity=0.600  Sum_probs=233.5

Q ss_pred             ccchHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHh
Q 019918           78 EISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN  157 (334)
Q Consensus        78 ~~~~~~rLraEa~aPfR~lR~Ffy~af~aSa~iG~~i~~~rliaal~G~~~a~~l~e~l~nlaI~igava~f~~L~~~e~  157 (334)
                      ....++|||+|+++|||++|+|||+||+|||+||+||+++|++++++|++++|+|+++++|||||+|+|++|+|||+||+
T Consensus       181 ~~~~~~kL~~E~~aPfR~~R~f~y~a~~asa~ig~~i~~~rl~~a~aG~~~ap~l~~~~~nlaI~igav~~f~~L~~~e~  260 (453)
T PLN03098        181 SFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIVAFVSLFLWEN  260 (453)
T ss_pred             chhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHhhcccchHHHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhhcccceEEecCCceeehhhhcccceEEEEecCHhHHHHHHhhchhhHHHHhhcCcEEEEEeeCCCC
Q 019918          158 KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNI  237 (334)
Q Consensus       158 k~~~~qlarisREe~L~rL~Vrl~~~r~v~L~qLRg~aRvVIvAG~~e~V~~al~~Ae~~r~~L~~rgVLVVPV~~dg~s  237 (334)
                      |++|+||+||+|||+|+||+|+++++|+|+|.|||+++|||||||++|+|+++|+.||+|+++|+++|||||||+|+++.
T Consensus       261 k~~e~q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~~~  340 (453)
T PLN03098        261 KKEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYRTELLKRGVLLIPVVWGENK  340 (453)
T ss_pred             cccHHHHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCHHHHHHHHHHhHHHHHHHHHcCcEEEEEecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CC----CCccchH-------------------HHHHHhhhhccceEEeecchhhHHHHHHHHHHHcCCCCCCCeEEEEee
Q 019918          238 PS----FEFEESE-------------------EMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRL  294 (334)
Q Consensus       238 p~----~~f~~~e-------------------~~~~~~~~~~~~w~A~Pv~~~eW~~wi~eQ~e~Agv~~~~gVyI~Lrl  294 (334)
                      +.    .+|+.++                   .+.+.....+++|+|+|+++++|++||+||++++||++++||||+|+|
T Consensus       341 ~~~~~~~gfg~~s~~a~~~p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~  420 (453)
T PLN03098        341 DPQPKKKGFGRSSKAAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRL  420 (453)
T ss_pred             ccccccccccccchhhhcCCCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEee
Confidence            42    2344211                   122333456788999999999999999999999999999999999999


Q ss_pred             CCeeecccCCCCcHHHHHhcCCCccchhhhccC
Q 019918          295 DGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLD  327 (334)
Q Consensus       295 DGRVr~SG~G~PpW~~lv~eLP~~~g~~~~~~d  327 (334)
                      |||||+||+|+|||++|++||||+|||||||.+
T Consensus       421 dGrVr~SG~G~P~W~~~v~eLP~~~~~~~~~~~  453 (453)
T PLN03098        421 DGRVRRSGRGMPEWQEIVKELPPLDSLLSKLER  453 (453)
T ss_pred             CCeEecCCCCCCCHHHHHHhCCcchhhhhhccC
Confidence            999999999999999999999999999999864

>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised Back     alignment and domain information
>PF13778 DUF4174: Domain of unknown function (DUF4174) Back     alignment and domain information
>PRK03147 thiol-disulfide oxidoreductase; Provisional Back     alignment and domain information
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins Back     alignment and domain information
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed Back     alignment and domain information
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE Back     alignment and domain information
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides Back     alignment and domain information
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold Back     alignment and domain information
>PTZ00056 glutathione peroxidase; Provisional Back     alignment and domain information
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX Back     alignment and domain information
>PLN02412 probable glutathione peroxidase Back     alignment and domain information
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified Back     alignment and domain information
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides Back     alignment and domain information
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain Back     alignment and domain information
>PTZ00256 glutathione peroxidase; Provisional Back     alignment and domain information
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7 Back     alignment and domain information
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.4 bits (148), Expect = 2e-10
 Identities = 62/399 (15%), Positives = 124/399 (31%), Gaps = 116/399 (29%)

Query: 4   VLHFSYILGPVGSGR--------------------------GYCNCQ----YHASRFCRQ 33
           ++      G +GSG+                            CN          +   Q
Sbjct: 154 LID-----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 34  ILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCSA----TDRSDPEISSA----ARI 85
           I   + SR+    +I L +HS     R  L S    +      +  + +  +A     +I
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 86  ----RNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPA--RAADVP-EILKG 138
               R + ++ F S     +++         L    ++   L      R  D+P E+L  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLD--HHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 139 LSIDVSAVSLFAFLYSRENKA-----KNAQLARLSR--EESLSNLKLRVDEKK------- 184
                  +S+ A    R+  A     K+    +L+   E SL+ L+    E +       
Sbjct: 326 NPR---RLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLS 379

Query: 185 II--SVNNLRGIARLVIC---SGPASY----IMESFKRSEPFTESLLERGVLVVSFTTDG 235
           +   S +    I  +++              ++    +      SL+E+     + +   
Sbjct: 380 VFPPSAH----IPTILLSLIWFDVIKSDVMVVVNKLHKY-----SLVEKQPKESTIS--- 427

Query: 236 NIPSFEFEESEEMKEFTRKRKRL------------WQLTPVYVSEWSKW-----LDEQKR 278
            IPS   E   +++      + +              L P Y+ ++        L   + 
Sbjct: 428 -IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 279 TAGISPESPVYLSLR-LDGRVRGSGVGYPPWNAFVAQLP 316
              ++    V+L  R L+ ++R        WNA  + L 
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDS---TAWNASGSILN 522
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
3gl3_A152 Putative thiol:disulfide interchange protein DSBE; 95.77
2lrt_A152 Uncharacterized protein; structural genomics, thio 95.69
3hcz_A148 Possible thiol-disulfide isomerase; APC61559.2, cy 95.54
3eyt_A158 Uncharacterized protein SPOA0173; thioredoxin-like 94.85
3or5_A165 Thiol:disulfide interchange protein, thioredoxin p 94.7
4hde_A170 SCO1/SENC family lipoprotein; structural genomics, 94.68
2f9s_A151 Thiol-disulfide oxidoreductase RESA; thioredoxin-l 94.56
2gs3_A185 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 94.16
3raz_A151 Thioredoxin-related protein; structural genomics, 94.15
3kcm_A154 Thioredoxin family protein; SGX, thioredoxin prote 93.99
3fkf_A148 Thiol-disulfide oxidoreductase; structural genomic 93.91
2obi_A183 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 93.91
2lja_A152 Putative thiol-disulfide oxidoreductase; structura 93.81
2l5o_A153 Putative thioredoxin; structural genomics, unknown 93.63
3fw2_A150 Thiol-disulfide oxidoreductase; structural genomic 93.49
3eur_A142 Uncharacterized protein; PSI2,MCSG, conserved prot 93.36
3drn_A161 Peroxiredoxin, bacterioferritin comigratory prote 92.84
2v1m_A169 Glutathione peroxidase; selenium, selenocysteine, 92.82
2ggt_A164 SCO1 protein homolog, mitochondrial; copper chaper 92.79
2jsy_A167 Probable thiol peroxidase; solution structure, ant 92.71
3kij_A180 Probable glutathione peroxidase 8; human PDI-perox 92.65
4evm_A138 Thioredoxin family protein; structural genomics, n 92.54
2lrn_A152 Thiol:disulfide interchange protein; structural ge 92.51
4fo5_A143 Thioredoxin-like protein; AHPC/TSA family protein, 92.51
3ewl_A142 Uncharacterized conserved protein BF1870; alpha-be 92.33
2b7k_A200 SCO1 protein; metallochaperone, cytochrome C oxida 92.26
3p7x_A166 Probable thiol peroxidase; thioredoxin fold, oxido 92.11
3lor_A160 Thiol-disulfide isomerase and thioredoxins; PSI, M 91.97
2b5x_A148 YKUV protein, TRXY; thioredoxin-like, oxidoreducta 91.76
3cmi_A171 Peroxiredoxin HYR1; thioredoxin-like fold, oxidore 91.36
2p5q_A170 Glutathione peroxidase 5; thioredoxin fold, oxidor 91.09
3zrd_A200 Thiol peroxidase; oxidoreductase, 2Cys peroxiredox 90.7
3ha9_A165 Uncharacterized thioredoxin-like protein; PSI, MCS 90.69
1jfu_A186 Thiol:disulfide interchange protein TLPA; thioredo 90.61
1lu4_A136 Soluble secreted antigen MPT53; thioredoxin-like f 90.46
2p31_A181 CL683, glutathione peroxidase 7; thioredoxin fold, 90.4
3lwa_A183 Secreted thiol-disulfide isomerase; thioredoxin, P 90.37
2vup_A190 Glutathione peroxidase-like protein; oxidoreductas 90.33
1xvw_A160 Hypothetical protein RV2238C/MT2298; thioredoxin f 90.27
3hdc_A158 Thioredoxin family protein; ATCC53774, DSM 7210, , 89.33
2rli_A171 SCO2 protein homolog, mitochondrial; copper protei 89.26
3me7_A170 Putative uncharacterized protein; electron transfe 89.07
3ztl_A222 Thioredoxin peroxidase; oxidoreductase, reductase, 89.03
1psq_A163 Probable thiol peroxidase; structural genomics, NY 88.99
3ia1_A154 THIO-disulfide isomerase/thioredoxin; oxidoreducta 88.14
3dwv_A187 Glutathione peroxidase-like protein; alpha beta, 3 88.11
3gkn_A163 Bacterioferritin comigratory protein; BCP, PRX, at 88.09
3kh7_A176 Thiol:disulfide interchange protein DSBE; TRX-like 87.74
3erw_A145 Sporulation thiol-disulfide oxidoreductase A; thio 87.22
2i3y_A215 Epididymal secretory glutathione peroxidase; thior 86.67
2r37_A207 Glutathione peroxidase 3; plasma, structural genom 86.51
2h30_A164 Thioredoxin, peptide methionine sulfoxide reductas 86.43
2a4v_A159 Peroxiredoxin DOT5; yeast nuclear thiol peroxidase 86.16
2yzh_A171 Probable thiol peroxidase; redox protein, antioxid 86.12
1xzo_A174 BSSCO, hypothetical protein YPMQ; thioredoxin-like 86.03
2b1k_A168 Thiol:disulfide interchange protein DSBE; C-termin 86.03
3ixr_A179 Bacterioferritin comigratory protein; alpha beta p 85.73
2c0d_A221 Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th 84.94
4g2e_A157 Peroxiredoxin; redox protein, structural genomics, 84.47
1q98_A165 Thiol peroxidase, TPX; structural genomics, NYSGXR 84.37
2hyx_A 352 Protein DIPZ; thioredoxin fold, jelly-roll, struct 83.47
3s9f_A165 Tryparedoxin; thioredoxin fold, disulfide reductas 82.96
1zzo_A136 RV1677; thioredoxin fold, structural genomics, PSI 82.69
1xvq_A175 Thiol peroxidase; thioredoxin fold, structural gen 82.2
2f8a_A208 Glutathione peroxidase 1; thioredoxin fold, struct 81.81
2ywi_A196 Hypothetical conserved protein; uncharacterized co 81.58
3qpm_A240 Peroxiredoxin; oxidoreductase, thioredoxin fold, p 81.42
1kng_A156 Thiol:disulfide interchange protein CYCY; thioredo 81.41
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Back     alignment and structure
Probab=95.77  E-value=0.21  Score=39.38  Aligned_cols=128  Identities=16%  Similarity=0.224  Sum_probs=78.1

Q ss_pred             hhcccceEEecCCceeehhhhcccceEEEEec-CHhHHHHHHhhchhhHHHHhhcCcEEEEEeeCCCCCCCCccchHHHH
Q 019918          171 ESLSNLKLRVDEKKIISVNNLRGIARLVICSG-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMK  249 (334)
Q Consensus       171 e~L~rL~Vrl~~~r~v~L~qLRg~aRvVIvAG-~~e~V~~al~~Ae~~r~~L~~rgVLVVPV~~dg~sp~~~f~~~e~~~  249 (334)
                      +.+-.+.+.- +++.+++.++++..-+|...+ .=.+....+...+.+.+.+.+.|+.||.|..+.+        .+...
T Consensus         7 ~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~--------~~~~~   77 (152)
T 3gl3_A            7 DKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAK--------TGDAM   77 (152)
T ss_dssp             SBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSS--------HHHHH
T ss_pred             CcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCC--------HHHHH
Confidence            3444555555 788999999998754444433 3355777777778888899999999999987531        22222


Q ss_pred             HHhhhhccceEEeecchhhHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcH--HHHHhcC
Q 019918          250 EFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPW--NAFVAQL  315 (334)
Q Consensus       250 ~~~~~~~~~w~A~Pv~~~eW~~wi~eQ~e~Agv~~~~gVyI~LrlDGRVr~SG~G~PpW--~~lv~eL  315 (334)
                      ++.......|.   +..+.-.    +-.+.-++. .-+.++.+..||+|+.+..|..++  .++.+.|
T Consensus        78 ~~~~~~~~~~~---~~~d~~~----~~~~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i  137 (152)
T 3gl3_A           78 KFLAQVPAEFT---VAFDPKG----QTPRLYGVK-GMPTSFLIDRNGKVLLQHVGFRPADKEALEQQI  137 (152)
T ss_dssp             HHHHHSCCCSE---EEECTTC----HHHHHTTCC-SSSEEEEECTTSBEEEEEESCCTTTHHHHHHHH
T ss_pred             HHHHHcCCCCc---eeECCcc----hhHHHcCCC-CCCeEEEECCCCCEEEEEccCCCcCHHHHHHHH
Confidence            32222222222   2111110    111223552 358899999999999999998776  3554443
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Back     alignment and structure
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Back     alignment and structure
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Back     alignment and structure
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 Back     alignment and structure
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} Back     alignment and structure
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Back     alignment and structure
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} Back     alignment and structure
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Back     alignment and structure
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Back     alignment and structure
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Back     alignment and structure
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Back     alignment and structure
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Back     alignment and structure
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 Back     alignment and structure
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Back     alignment and structure
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Back     alignment and structure
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Back     alignment and structure
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A Back     alignment and structure
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Back     alignment and structure
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Back     alignment and structure
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Back     alignment and structure
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Back     alignment and structure
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Back     alignment and structure
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 Back     alignment and structure
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Back     alignment and structure
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} Back     alignment and structure
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Back     alignment and structure
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Back     alignment and structure
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Back     alignment and structure
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Back     alignment and structure
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Back     alignment and structure
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} Back     alignment and structure
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Back     alignment and structure
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Back     alignment and structure
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Back     alignment and structure
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Back     alignment and structure
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Back     alignment and structure
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Back     alignment and structure
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Back     alignment and structure
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Back     alignment and structure
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Back     alignment and structure
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A Back     alignment and structure
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Back     alignment and structure
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A Back     alignment and structure
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 Back     alignment and structure
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} Back     alignment and structure
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Back     alignment and structure
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Back     alignment and structure
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Back     alignment and structure
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Back     alignment and structure
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Back     alignment and structure
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A Back     alignment and structure
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Back     alignment and structure
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Back     alignment and structure
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A Back     alignment and structure
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Back     alignment and structure
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Back     alignment and structure
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Back     alignment and structure
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Back     alignment and structure
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A Back     alignment and structure
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} Back     alignment and structure
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Back     alignment and structure
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d1xzoa1172 Thioredoxin-like protein Sco1 (YpmQ), soluble doma 92.84
d1st9a_137 Thiol-disulfide oxidoreductase ResA {Bacillus subt 92.74
d1jfua_176 Membrane-anchored thioredoxin-like protein TlpA, s 91.95
d2fy6a1143 Peptide methionine sulfoxide reductase MsrA/MsrB, 91.88
d1o73a_144 Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 87.77
d1xvwa1153 Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri 85.83
d1i5ga_144 Tryparedoxin II {Crithidia fasciculata [TaxId: 565 85.13
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.84  E-value=0.26  Score=39.37  Aligned_cols=132  Identities=17%  Similarity=0.251  Sum_probs=73.0

Q ss_pred             cCCceeehhhhcccceEEEEecC--HhHHHHHHhhchhhHHHHhh--cCcEEEEEeeCCCCCCCCccchHHHHHHhhh--
Q 019918          181 DEKKIISVNNLRGIARLVICSGP--ASYIMESFKRSEPFTESLLE--RGVLVVSFTTDGNIPSFEFEESEEMKEFTRK--  254 (334)
Q Consensus       181 ~~~r~v~L~qLRg~aRvVIvAG~--~e~V~~al~~Ae~~r~~L~~--rgVLVVPV~~dg~sp~~~f~~~e~~~~~~~~--  254 (334)
                      .+|+.+++++|||..-+|..-.+  ...+...+.....+.+.|.+  .+|.+|-|.+|....     ..+..+++...  
T Consensus        19 ~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~D-----tp~~l~~y~~~~~   93 (172)
T d1xzoa1          19 QDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPEND-----KPKQLKKFAANYP   93 (172)
T ss_dssp             TTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTC-----CHHHHHHHHTTSC
T ss_pred             CCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccc-----hHHHHHHHHHHhc
Confidence            46899999999997654443222  12223333333344555554  358888887753221     11233333322  


Q ss_pred             -hccceEE-eecchhhHHHHHHHHHHH-cCCCCCC------CeEEEEeeCCeeec--ccCCCCcHHHHHhcCCC
Q 019918          255 -RKRLWQL-TPVYVSEWSKWLDEQKRT-AGISPES------PVYLSLRLDGRVRG--SGVGYPPWNAFVAQLPP  317 (334)
Q Consensus       255 -~~~~w~A-~Pv~~~eW~~wi~eQ~e~-Agv~~~~------gVyI~LrlDGRVr~--SG~G~PpW~~lv~eLP~  317 (334)
                       ....|.. +-...+...++....... .+.+.++      ..+++|..||+|++  .|...+|+++++++|-.
T Consensus        94 ~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik~  167 (172)
T d1xzoa1          94 LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKS  167 (172)
T ss_dssp             CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHH
T ss_pred             cccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHHH
Confidence             2235653 222345555555443322 1222111      24778999999995  47777889999987643
>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Back     information, alignment and structure
>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Back     information, alignment and structure
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure