Citrus Sinensis ID: 019921

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL
Secondary Structure (PSIPRED)
cccEEcccEEEEcccccHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccHHHHHHHccccccHHHHHHHHHHcccccEEEEEccccccHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEcccHHHHHHcccccccccccccccccccccEEEcccccEEEEcccccEEEcccccccHHHHHHHHHHccccccEEEEEEcccccccEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHcccEEEEcccccHHHHHHHHHHccccEccccHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHccccEEEEEccccccccEEEEcccccccccccccEEEEEEEEEccccccccccccccccccEEEEEEcccccccEEEEEEccHHHHHHcccHHHHHHHHcccccEEccccEEEccccEEEEEccccHEEEEcccccccHHHHHHHHHcccHHHEEEEcccccccccEEEEEEEEcccccccHHHHHHHHccccccccHHHHHHHHHHccccccccccHEEEEHHHccccccHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MAMLMVGAChvfipkfeskSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIlngggglpseLMKEATNSFPKAKLIsaygmtetsssltfmtlydptletpgqlpqafgnvtpnsvhqpqgvcvgkpaphvelkvcsdgsshvgriLTRGAHVMLRYWDqflakpsvstgevwldtgdigsiddggnvwlvgrrngriksggenvypeEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLREswqwsesncdqssknkelLLSSEVLRQHCReknltgfkaprlfvlwrkpfpltstgkirrdEVRREVMSHLKSLPSNL
Flexible Loop (DISEMBL)
MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRvkktwkgrdsvkkilngggglpseLMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKvcsdgsshvgRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTgdigsiddggnvwLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESwqwsesncdqssknKELLLSSEVLRQHCREKnltgfkaprlfvlwrkpfpltstgkirrdevRREVMshlkslpsnl
Low Complexity Region (SEG)
MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLdtgdigsiddggNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPgiigivvvgiANARLTEMVVACVRLRESWQWSESNCDQssknkelllssevlRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL
Disordered region (IsUnstruct)
***LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGG******************KLISAYGMTETSSSLTFMTLYDPTLE*******AFGNV*******PQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSE************LLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS************************
Disordered Region (DISOPRED)
MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV***********
Disordered Region (DISEMBL)
MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQ***********NKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM**********
Disordered Region (DISPRO)
MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q8VYJ1	560	2-succinylbenzoate--CoA l	yes	no	0.964	0.575	0.586	1e-110
Q4R4Z9	618	Acyl-CoA synthetase famil	N/A	no	0.853	0.461	0.270	6e-29
Q8VCW8	615	Acyl-CoA synthetase famil	yes	no	0.856	0.465	0.284	7e-29
Q499N5	615	Acyl-CoA synthetase famil	yes	no	0.817	0.443	0.281	7e-28
Q0P4F7	606	Acyl-CoA synthetase famil	yes	no	0.814	0.448	0.276	3e-27
Q96CM8	615	Acyl-CoA synthetase famil	yes	no	0.850	0.461	0.267	1e-26
Q5R9G9	615	Acyl-CoA synthetase famil	yes	no	0.850	0.461	0.264	2e-26
O31826	549	Putative acyl-CoA synthet	yes	no	0.850	0.517	0.257	4e-26
Q17QJ1	615	Acyl-CoA synthetase famil	yes	no	0.853	0.463	0.276	7e-26
P23971	486	2-succinylbenzoate--CoA l	no	no	0.793	0.545	0.280	2e-22

>sp|Q8VYJ1|MENE_ARATH 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal OS=Arabidopsis thaliana GN=AAE14 PE=1 SV=1

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/341 (58%), Positives = 249/341 (73%), Gaps = 19/341 (5%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           MAMLMVGACHV +PKF++K+AL+ +EQ+ +T  ITVPA+MADL  + R  K       V+
Sbjct: 232 MAMLMVGACHVLLPKFDAKTALQVMEQNHITCFITVPAMMADLIRVNRTTKNGAENRGVR 291

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           KILNGGG L SEL+KEA N FP A+++SAYGMTE  SSLTFMTL+DPT E+         
Sbjct: 292 KILNGGGSLSSELLKEAVNIFPCARILSAYGMTEACSSLTFMTLHDPTQES--------F 343

Query: 121 NVTPNSVHQP-QGVCVGKPAPHVELKVCSD-GSSHVGRILTRGAHVMLRYWDQFLAKPSV 178
            VT   ++QP QG CVGKPAPH+EL V  D  SS VG+ILTRG H MLRYW   +A+ +V
Sbjct: 344 KVTYPLLNQPKQGTCVGKPAPHIELMVKLDEDSSRVGKILTRGPHTMLRYWGHQVAQENV 403

Query: 179 ST-----GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233
            T      E WLDTGDIG+ D+ GN+WL+GR NGRIK+GGENVYPEEVEAVL++HPGI+ 
Sbjct: 404 ETSESRSNEAWLDTGDIGAFDEFGNLWLIGRSNGRIKTGGENVYPEEVEAVLVEHPGIVS 463

Query: 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 293
            VV+G+ + RL EMVVACVRL+E W WS    D  ++     LSSE L+ HCR +NLTGF
Sbjct: 464 AVVIGVIDTRLGEMVVACVRLQEKWIWS----DVENRKGSFQLSSETLKHHCRTQNLTGF 519

Query: 294 KAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
           K P+ FV W K FPLT+TGK++RDEVRR+V+SH + + S+L
Sbjct: 520 KIPKRFVRWEKQFPLTTTGKVKRDEVRRQVLSHFQIMTSSL 560

Involved in the biosynthesis of phylloquinone (vitamin K1). Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 6

>sp|Q4R4Z9|ACSF2_MACFA Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1

 Score =  128 bits (321), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 155/336 (46%), Gaps = 51/336 (15%)

Query: 1   MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-- 57
           M  LM GA  +   P F  K ALEA+ +   + L   P +  D+      +  +   D  
Sbjct: 323 MMCLMYGATLILASPVFNGKKALEAISRERGSFLYGTPTMFVDILN----QPDFSSYDIS 378

Query: 58  SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
           +++  +  G   P EL++   N      L+ AYG TE S                   P 
Sbjct: 379 TMRGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENS-------------------PV 419

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYWDQ 171
            F N   ++V Q +   VG+  PH E ++ +  +  +      G +  RG  VML YW +
Sbjct: 420 TFANFPEDTVEQ-KAESVGRIMPHTEARIMNMEAGMLAELNTPGELCIRGYCVMLGYWGE 478

Query: 172 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
                     + W  TGDI ++++ G   +VGR    I  GGEN+YP E+E     HP +
Sbjct: 479 PQKTGEAVDQDKWYRTGDIATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKV 538

Query: 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
             + VVG+ + R+ E + AC+RL++  +                 ++E ++  C+ K ++
Sbjct: 539 QEVQVVGVKDDRMGEEICACIRLKDGEE----------------TTAEEMKAFCKGK-IS 581

Query: 292 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
            FK PR ++++   +PLT++GKI++ ++R ++  HL
Sbjct: 582 HFKIPR-YIVFVTNYPLTTSGKIQKFKLREQMERHL 616

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VCW8|ACSF2_MOUSE Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1

 Score =  128 bits (321), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 51/337 (15%)

Query: 1   MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-- 57
           M  +M GA  +   P F  K ALEA+ +   T L   P +  D+      +  +   D  
Sbjct: 320 MVSMMHGATLLLSSPSFNGKKALEAISREKGTLLYGTPTMFVDILN----QPDFSSYDFT 375

Query: 58  SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
           S++  +  G   P EL++   N     +L+  YG TE +S +TFM   + TLE      Q
Sbjct: 376 SIRGGVIAGSPAPPELIRAIINKMNMKELVVVYGTTE-NSPVTFMNFPEDTLE------Q 428

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYWDQ 171
             G+V             G+  PH E ++ +  +  +      G +  RG  VM  YW +
Sbjct: 429 KAGSV-------------GRIMPHTEAQIVNVETGELTNLNVPGELYIRGYCVMQGYWGE 475

Query: 172 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
                     + W  TGDI  +D+ G   +VGR    I  GGEN+YP E+E   L+HP +
Sbjct: 476 PQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQV 535

Query: 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
               VVG+ + R+ E + AC+RL+                     ++E ++  C+ K ++
Sbjct: 536 QEAQVVGVKDERMGEEICACIRLKSGET----------------TTAEEIKAFCKGK-IS 578

Query: 292 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 328
            FK PR ++++ + +PLT +GKI++ ++R ++  HLK
Sbjct: 579 HFKIPR-YIVFVEGYPLTISGKIQKFKLREQMEQHLK 614

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q499N5|ACSF2_RAT Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1

 Score =  124 bits (312), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 151/323 (46%), Gaps = 50/323 (15%)

Query: 14  PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPS 71
           P F  K ALEA+ +   T L   P +  D+      +  +   D  +++  +  G   P 
Sbjct: 334 PSFNGKKALEAISREKGTLLYGTPTMFVDILN----QPDFSSYDFTTIRGGVIAGSLAPP 389

Query: 72  ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQ 131
           EL++   +     +L+  YG TE +S +TFM   + TLE      Q  G+V         
Sbjct: 390 ELIRAIISKMNMKELVVVYGTTE-NSPVTFMNFPEDTLE------QKAGSV--------- 433

Query: 132 GVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYWDQFLAKPSVSTGEVWL 185
               G+  PH E ++ +  +  +      G +  RG  VM  YW +          + W 
Sbjct: 434 ----GRIMPHTEAQIVNMETGELTKLNMPGELCIRGYCVMQGYWGEPQKTFETVGQDRWY 489

Query: 186 DTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 245
            TGDI S+D+ G   +VGR    I  GGEN+YP E+E    +HP +    VVG+ + R+ 
Sbjct: 490 RTGDIASMDEQGFCRIVGRSKDMIIRGGENIYPAELEDFFHKHPQVQEAQVVGVKDDRMG 549

Query: 246 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP 305
           E + AC+RL+     +E                E ++  C+ K ++ FK PR ++++ + 
Sbjct: 550 EEICACIRLKSGETTTE----------------EEIKAFCKGK-ISHFKIPR-YIVFVEG 591

Query: 306 FPLTSTGKIRRDEVRREVMSHLK 328
           +PLT +GKI++ ++R ++  HLK
Sbjct: 592 YPLTVSGKIQKFKLREQMEQHLK 614

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q0P4F7|ACSF2_DANRE Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 142/318 (44%), Gaps = 46/318 (14%)

Query: 16  FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMK 75
           ++ ++ L A+E+   T +   P +  D+     + K      SV+  +  G   P E+M+
Sbjct: 327 YDGRANLRAIEKEKCTFVYGTPTMYIDMLGQPDLAKF--DLSSVRGGIAAGSPCPPEVMR 384

Query: 76  EATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCV 135
           +  N     +++  YG TE S                   P  F     +S  + + V V
Sbjct: 385 KILNVMGIKEMVIGYGTTENS-------------------PVTFCGFPVDSAER-KIVTV 424

Query: 136 GKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGD 189
           G  +PH E KV    +  +      G ++ RG  VML YW          T + W  TGD
Sbjct: 425 GCISPHTEAKVVDPTTGEIVPLGAQGELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGD 484

Query: 190 IGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 249
           I S+D      + GR    I  GGEN+YP E+E  L  HP I+   VVG+ + R+ E V 
Sbjct: 485 IASLDQFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVC 544

Query: 250 ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT 309
           AC+RL+E  +                 + E ++ +C+ K +  +K PR ++L+ + +PLT
Sbjct: 545 ACIRLKEGQE----------------CTVEEIKAYCKGK-IAHYKVPR-YILFVQDYPLT 586

Query: 310 STGKIRRDEVRREVMSHL 327
            TGKI++ ++R      L
Sbjct: 587 ITGKIQKHKLRERTEKQL 604

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q96CM8|ACSF2_HUMAN Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 53/337 (15%)

Query: 1   MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
           M  LM GA  +   P F  K ALEA+ +   T L   P +  D+      +  +   D +
Sbjct: 320 MMCLMYGATLILASPIFNGKKALEAISRERGTFLYGTPTMFVDILN----QPDFSSYD-I 374

Query: 60  KKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 116
             +  G   G   P EL++   N      L+ AYG TE S                   P
Sbjct: 375 STMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENS-------------------P 415

Query: 117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYWD 170
             F +   ++V Q +   VG+  PH E ++ +  +  +      G +  RG  VML YW 
Sbjct: 416 VTFAHFPEDTVEQ-KAESVGRIMPHTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWG 474

Query: 171 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230
           +          + W  TGD+ ++++ G   +VGR    I  GGEN+YP E+E     HP 
Sbjct: 475 EPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPK 534

Query: 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290
           +  + VVG+ + R+ E + AC+RL++  +                 + E ++  C+ K +
Sbjct: 535 VQEVQVVGVKDDRMGEEICACIRLKDGEE----------------TTVEEIKAFCKGK-I 577

Query: 291 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
           + FK P+ ++++   +PLT +GKI++ ++R ++  HL
Sbjct: 578 SHFKIPK-YIVFVTNYPLTISGKIQKFKLREQMERHL 613

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9G9|ACSF2_PONAB Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 151/337 (44%), Gaps = 53/337 (15%)

Query: 1   MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
           M  LM GA  +   P F  K ALEA+ +   + L   P +  D+      +  +   D +
Sbjct: 320 MMCLMYGATLILASPVFNGKKALEAISRERGSFLYGTPTMFVDILN----QPDFSSYD-I 374

Query: 60  KKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 116
             +  G   G   P EL++   N      L+ AYG                   TP   P
Sbjct: 375 STMCGGVIAGSPAPPELIRAIINKINMKDLVVAYG-------------------TPENSP 415

Query: 117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYWD 170
             F +   ++V Q +   VG+  PH E ++ +  +  +      G +  RG  VML YW 
Sbjct: 416 VTFAHFPEDTVEQ-KAESVGRIMPHTEARIMNMEAGTLAELNTPGELCIRGYCVMLGYWG 474

Query: 171 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230
           +          + W  TGD+ ++++ G   +VGR    I  GGEN+YP E+E     HP 
Sbjct: 475 EPQKTEEAVDQDKWYRTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPK 534

Query: 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290
           +  + VVG+ + R+ E + AC+RL++  +                 + E ++  C+ K +
Sbjct: 535 VQEVQVVGVKDDRMGEEICACIRLKDGEE----------------TTVEEIKAFCKGK-I 577

Query: 291 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
           + FK PR ++++   +PLT +GKI++ ++R ++  HL
Sbjct: 578 SHFKIPR-YIVFVTNYPLTISGKIQKFKLREQMERHL 613

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O31826|YNGI_BACSU Putative acyl-CoA synthetase YngI OS=Bacillus subtilis (strain 168) GN=yngI PE=3 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 46/330 (13%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A + VGA  + + +F+  + L+ VE+   T L  VP +   +A L           +++
Sbjct: 251 LACVSVGAAMIPVQEFDPVTVLKTVEKEKCTVLHGVPTMF--IAELHHPDFDAYDLSTLR 308

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
             +  G   PSE+MK          +  AYG TE S  +T                    
Sbjct: 309 TGIMAGSPCPSEVMKAVIERMGMKDITIAYGQTEASPVIT-------------------- 348

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYWDQFLA 174
               N     +    G+  PH E+K+   G+         G + TRG HVM  Y+    A
Sbjct: 349 QTRANDSFIRRVETTGRALPHTEVKIVEPGTCQEVQRGMQGELCTRGYHVMKGYYKDKDA 408

Query: 175 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 234
                  + WL TGD+  +D+ G   + GR    +  GGEN+YP E+E  L QHP ++ +
Sbjct: 409 TRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHPAVLDV 468

Query: 235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 294
            VVG+ +A+  E   A ++L++                   +S + L+ +C+ K +   K
Sbjct: 469 QVVGVPDAKFGEEAAAWIKLKDGKS----------------VSPDELKAYCKGK-IARHK 511

Query: 295 APRLFVLWRKPFPLTSTGKIRRDEVRREVM 324
            PR +V++   +P+T++GKI++ ++R + +
Sbjct: 512 IPR-YVIFTDDYPMTASGKIQKYKLREKTI 540

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q17QJ1|ACSF2_BOVIN Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 153/336 (45%), Gaps = 51/336 (15%)

Query: 1   MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-- 57
           M  LM G   +   P FE K  LEA+ +     L   P +  D+      +  +   D  
Sbjct: 320 MVSLMHGVTLILCSPVFEGKKTLEAISRERGCFLYGTPTMFVDVLN----QPDFSSYDIS 375

Query: 58  SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
           +++  +  G   P EL++   N     +L+ AYG TE S                   P 
Sbjct: 376 TMRGGVIAGSPAPPELIRAIINKLNMKELVVAYGTTENS-------------------PV 416

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRILTRGAHVMLRYWDQ 171
            F N T ++V Q +   VG+  PH E ++ +  +  +      G +  RG  VML YW +
Sbjct: 417 TFMNFTEDTVEQ-KAESVGRVMPHTEAQIVNTETGTLTELNTPGELCIRGYCVMLGYWGE 475

Query: 172 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
                     + W  TGDI  +D+ G   +VGR    I  GGEN+YP E+E     HP +
Sbjct: 476 PQKTEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQV 535

Query: 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
             + VVG+ + R+ E + AC+RL+E  +                 ++E ++  C+ K ++
Sbjct: 536 QEVQVVGVKDDRMGEEICACIRLKEGEK----------------TTAEEIKAFCKGK-IS 578

Query: 292 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
            FK PR ++++   +PLT +GKI++ ++R ++  HL
Sbjct: 579 HFKIPR-YIVFVTNYPLTVSGKIQKFKLREQMEQHL 613

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P23971|MENE_BACSU 2-succinylbenzoate--CoA ligase OS=Bacillus subtilis (strain 168) GN=menE PE=3 SV=2

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 59/324 (18%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           ++ G   V   +F     L ++ +H VT +  V  ++A L     +++T +  +S++ IL
Sbjct: 207 VIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTMLASL-----LEETNRCPESIRCIL 261

Query: 64  NGGGGLPSELMKEA-TNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
            GGG  P  L++E     FP   +  +YGMTET S +                      +
Sbjct: 262 LGGGPAPLPLLEECREKGFP---VFQSYGMTETCSQIV--------------------TL 298

Query: 123 TPNSVHQPQGVCVGKPAPHVELKVCSDGS----SHVGRILTRGAHVMLRYWDQFLA-KPS 177
           +P    +  G   GKP    E+K+  DG        G I+ +G +VM  Y+++  A + S
Sbjct: 299 SPEFSMEKLG-SAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEAS 357

Query: 178 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 237
              G  WL TGD+G +D+ G ++++ RR+  I SGGEN+YP EVE+VLL HP +    V 
Sbjct: 358 FQNG--WLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEAGVS 415

Query: 238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP- 296
           G  + +  ++  A + L +                   +S+  L  +C+E+ L  +K P 
Sbjct: 416 GAEDKKWGKVPHAYLVLHKP------------------VSAGELTDYCKER-LAKYKIPA 456

Query: 297 RLFVLWRKPFPLTSTGKIRRDEVR 320
           + FVL R   P  ++ K+ R++++
Sbjct: 457 KFFVLDR--LPRNASNKLLRNQLK 478

Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA).

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
224122352	590	predicted protein [Populus trichocarpa]	0.997	0.564	0.703	1e-141
225444051	565	PREDICTED: 2-succinylbenzoate--CoA ligas	1.0	0.591	0.685	1e-131
356533059	560	PREDICTED: 2-succinylbenzoate--CoA ligas	0.991	0.591	0.649	1e-126
356555885	560	PREDICTED: 2-succinylbenzoate--CoA ligas	0.991	0.591	0.643	1e-126
359483953	545	PREDICTED: 2-succinylbenzoate--CoA ligas	0.925	0.566	0.631	1e-122
255575310	551	AMP dependent CoA ligase, putative [Rici	0.922	0.558	0.602	1e-119
449433565	564	PREDICTED: 2-succinylbenzoate--CoA ligas	1.0	0.592	0.622	1e-118
449511136	572	PREDICTED: 2-succinylbenzoate--CoA ligas	1.0	0.583	0.608	1e-116
357448509	562	2-succinylbenzoate-CoA ligase [Medicago	0.982	0.583	0.603	1e-115
356555887	544	PREDICTED: 2-succinylbenzoate--CoA ligas	0.916	0.562	0.583	1e-111

>gi|224122352|ref|XP_002330602.1| predicted protein [Populus trichocarpa] gi|222872160|gb|EEF09291.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/334 (70%), Positives = 277/334 (82%), Gaps = 1/334 (0%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           + MLMVG CHV IPKFE+  A+EA++QHCVTSLITVPA+MADL +L R+K+TWKGR  VK
Sbjct: 258 ITMLMVGGCHVLIPKFEASLAIEAIKQHCVTSLITVPAMMADLISLTRLKETWKGRQYVK 317

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           K+LNGGG L +ELMK+AT  FP+AKL+SAYGMTET SSLTFMTL+DPTL+TP Q  Q   
Sbjct: 318 KLLNGGGSLSAELMKDATELFPRAKLLSAYGMTETCSSLTFMTLHDPTLQTPAQTLQTVD 377

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST 180
               +S HQP GVCVGKP PHVELK+ +D  S +GRILTRG H+MLRYWDQ   K + ST
Sbjct: 378 KTKSSSAHQPHGVCVGKPPPHVELKISADEPSTIGRILTRGPHLMLRYWDQNPMKATEST 437

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
            + WLDTGDIGSIDD GNVWLVGR+N +IKSGGEN+YPEEVEA+LLQHPG+I  VVVG+ 
Sbjct: 438 NDFWLDTGDIGSIDDCGNVWLVGRQNAQIKSGGENIYPEEVEAMLLQHPGVIATVVVGVP 497

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
            ARLTEMVVAC++LR+SWQW+ +NC QS++N  L L  EVLR +CREK LTGFK P+LF+
Sbjct: 498 EARLTEMVVACIKLRQSWQWTNNNCKQSAENN-LTLCREVLRDYCREKKLTGFKVPKLFI 556

Query: 301 LWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
           LWRKPFPLT+TGKIRRD+VRREVMSHL+  PSNL
Sbjct: 557 LWRKPFPLTTTGKIRRDQVRREVMSHLQFFPSNL 590

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444051|ref|XP_002263998.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform 1 [Vitis vinifera] gi|297740839|emb|CBI31021.3| unnamed protein product [Vitis vinifera]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/334 (68%), Positives = 276/334 (82%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           + MLMVG CH+FIPKF++K ALEA++QH VTSLITVPAIM DL ++IR+K TWK  +SVK
Sbjct: 232 LTMLMVGGCHIFIPKFDAKLALEAIKQHHVTSLITVPAIMVDLVSIIRMKMTWKVTESVK 291

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           KILNGGGGL + L+++A   FP+AK++SAYGMTET SSLTFMTLYDPT  +  Q  Q F 
Sbjct: 292 KILNGGGGLSNGLIEDAIKFFPRAKILSAYGMTETCSSLTFMTLYDPTCASSRQALQEFV 351

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST 180
            +  +S H P+GVCVGKPAPHVELK+C D S HVGRILTRG H+MLRYWDQ  ++PS S 
Sbjct: 352 EIKSSSFHLPEGVCVGKPAPHVELKICFDSSDHVGRILTRGPHIMLRYWDQISSRPSDSP 411

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
            E WLDTGDIGSIDD GN+WL+GR N RIKSGGENVYPEEVE VL QHPG+ G VVVG+ 
Sbjct: 412 DEGWLDTGDIGSIDDYGNIWLIGRTNNRIKSGGENVYPEEVETVLSQHPGVTGSVVVGLP 471

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
           + RLTEMVVAC+R++++WQW++++    ++ KEL+LSSE LR HCREKNLTGFK P+LF 
Sbjct: 472 DVRLTEMVVACIRIKDNWQWADNSPVHPTEKKELVLSSETLRHHCREKNLTGFKIPKLFT 531

Query: 301 LWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
           LWRKPFPLTSTGK+RR +V+REV+SHL SLPSNL
Sbjct: 532 LWRKPFPLTSTGKLRRYQVQREVLSHLHSLPSNL 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533059|ref|XP_003535086.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like [Glycine max]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/334 (64%), Positives = 263/334 (78%), Gaps = 3/334 (0%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           M MLMVG CHV +PKF+++SA++A+EQ+ VTS ITVPAIMA L ++IR K+TW+G D+VK
Sbjct: 230 MTMLMVGGCHVLMPKFDAESAVDAIEQYAVTSFITVPAIMASLISIIRHKETWQGGDTVK 289

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           KILNGGG L  EL+K+ +  F KAKLISAYGMTET SSLTF+TLY+P  ET  Q  QAFG
Sbjct: 290 KILNGGGSLSHELIKDTSIFFHKAKLISAYGMTETCSSLTFLTLYEPMHETTSQSLQAFG 349

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST 180
                 +HQ QGVCVGK APH+ELK+ +D S H+GRILTRG H+MLRYWDQ L  P    
Sbjct: 350 VAGSKLIHQQQGVCVGKAAPHIELKISADASGHIGRILTRGPHIMLRYWDQTLTNPLNPN 409

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
            E WLDTGDIGSID  GN+WL+GR NGRIKSGGEN+YPEEVEA+L QHPGI  +VVVGI 
Sbjct: 410 NEAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILQQHPGIASVVVVGIP 469

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
           +A LTEMV AC++LRE+WQWSE     S+ N+E LLS + L Q+C E +L+ FK P+ F+
Sbjct: 470 DAHLTEMVAACIQLRENWQWSE---QLSASNEEFLLSRKNLYQYCLENHLSRFKIPKTFI 526

Query: 301 LWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
           +WRKPF LT+TGKIRRD+VR+EVMS L+SL SNL
Sbjct: 527 VWRKPFQLTTTGKIRRDQVRKEVMSQLQSLHSNL 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555885|ref|XP_003546260.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like isoform 1 [Glycine max]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/334 (64%), Positives = 263/334 (78%), Gaps = 3/334 (0%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           M MLMVG CHV +PKF+++SA++A+EQH VTS ITVPAIMA L ++IR K+TWKG ++VK
Sbjct: 230 MTMLMVGGCHVLMPKFDAESAVDAIEQHAVTSFITVPAIMASLISIIRHKETWKGGETVK 289

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           KILNGGG L  EL+K+ +  F KAKLISAYGMTET SSLTF+TLYDP  ET  Q  QAFG
Sbjct: 290 KILNGGGSLSHELIKDTSIFFHKAKLISAYGMTETCSSLTFLTLYDPMHETTNQSLQAFG 349

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST 180
                 +HQ QGVC+GK APH+ELK+ +D S H GRILTRG H+MLRYWDQ L  P    
Sbjct: 350 VAGSKLIHQQQGVCIGKAAPHIELKISADASGHTGRILTRGPHIMLRYWDQTLTNPLNPN 409

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
              WLDTGDIGSID  GN+WL+GR NGRIKSGGEN+YPEEVEA+L QHPGI  +VVVGI 
Sbjct: 410 KRAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILQQHPGIASVVVVGIP 469

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
           +A LTEMV AC++LRE+WQWSE     S+ N+E LLS + ++Q+C E +L+ FK P++F+
Sbjct: 470 DAHLTEMVAACIQLRENWQWSE---QLSASNEEFLLSRKNIQQYCIENHLSRFKIPKMFI 526

Query: 301 LWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
           +WRKPFPLT+ GKI+RD+VR+EVMS L+SL SNL
Sbjct: 527 VWRKPFPLTTIGKIKRDQVRKEVMSQLQSLHSNL 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483953|ref|XP_003633043.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform 2 [Vitis vinifera]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/342 (63%), Positives = 256/342 (74%), Gaps = 33/342 (9%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLI--------RVKKT 52
           + MLMVG CH+FIPKF++K ALEA++QH VTSLITVPAIM DL ++I        R+K T
Sbjct: 229 LTMLMVGGCHIFIPKFDAKLALEAIKQHHVTSLITVPAIMVDLVSIISSGLESFVRMKMT 288

Query: 53  WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 112
           WK  +SVKKILNGG                         MTET SSLTFMTLYDPT  + 
Sbjct: 289 WKVTESVKKILNGG-------------------------MTETCSSLTFMTLYDPTCASS 323

Query: 113 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQF 172
            Q  Q F  +  +S H P+GVCVGKPAPHVELK+C D S HVGRILTRG H+MLRYWDQ 
Sbjct: 324 RQALQEFVEIKSSSFHLPEGVCVGKPAPHVELKICFDSSDHVGRILTRGPHIMLRYWDQI 383

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            ++PS S  E WLDTGDIGSIDD GN+WL+GR N RIKSGGENVYPEEVE VL QHPG+ 
Sbjct: 384 SSRPSDSPDEGWLDTGDIGSIDDYGNIWLIGRTNNRIKSGGENVYPEEVETVLSQHPGVT 443

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
           G VVVG+ + RLTEMVVAC+R++++WQW++++    ++ KEL+LSSE LR HCREKNLTG
Sbjct: 444 GSVVVGLPDVRLTEMVVACIRIKDNWQWADNSPVHPTEKKELVLSSETLRHHCREKNLTG 503

Query: 293 FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
           FK P+LF LWRKPFPLTSTGK+RR +V+REV+SHL SLPSNL
Sbjct: 504 FKIPKLFTLWRKPFPLTSTGKLRRYQVQREVLSHLHSLPSNL 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575310|ref|XP_002528558.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223532002|gb|EEF33813.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/347 (60%), Positives = 256/347 (73%), Gaps = 39/347 (11%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATL-------------I 47
           MAMLMVGACHVFIPKF +  A++ ++QH VTSLITVPA M DL +L             +
Sbjct: 231 MAMLMVGACHVFIPKFNASLAVDVIDQHNVTSLITVPATMGDLISLTSQLAQFIFQRNFV 290

Query: 48  RVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDP 107
           R K+TWKGR ++KK+LNGG                         MTE+ SSLTFMTLYDP
Sbjct: 291 REKETWKGRHTLKKMLNGG-------------------------MTESCSSLTFMTLYDP 325

Query: 108 TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLR 167
           TLETP QL Q +G     SV+QPQGVCVGKPAPHVE+K+C DGSSH GRILTRG H MLR
Sbjct: 326 TLETPDQLLQTYGRTKLTSVNQPQGVCVGKPAPHVEIKICPDGSSHSGRILTRGPHAMLR 385

Query: 168 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
           YWDQ  ++ S  T E+WLDTGDIG ID  GN+WL+GR N RIKSGGENV+PEEVEA+LLQ
Sbjct: 386 YWDQTPSEASDRTNEIWLDTGDIGIIDGSGNLWLIGRANNRIKSGGENVHPEEVEAILLQ 445

Query: 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 287
           HPG+   +V+GI +ARL EMVVAC+RLRE W+WS  +C +    KE+LL SE+L+++CRE
Sbjct: 446 HPGVAAAIVLGIPDARLMEMVVACIRLREGWRWSNDDC-KPLAGKEILLCSEILQKYCRE 504

Query: 288 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
           KNL+ FK P++F++WRKPFPLT++GKIRRD++R EV SHL+ LPS+L
Sbjct: 505 KNLSRFKVPKIFIIWRKPFPLTTSGKIRRDQIRGEVTSHLQFLPSSL 551

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433565|ref|XP_004134568.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like [Cucumis sativus]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/334 (62%), Positives = 259/334 (77%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +AMLM+GA H+ IPKFE KSA+EA++ + VTSLITVPA+MADL +LIR +   K R+SVK
Sbjct: 231 IAMLMLGARHILIPKFEVKSAVEAIDLYGVTSLITVPAMMADLVSLIRERDNGKTRESVK 290

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           KILNGGGGLP EL+K+A   FP+AKL+SAYGMTET SSLTF+ L DP  ET     Q++ 
Sbjct: 291 KILNGGGGLPLELIKDAVGIFPRAKLVSAYGMTETCSSLTFLMLCDPMGETSVPHFQSYE 350

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST 180
           +    SV+QP+GVCVGKPAPH+E+K+  DGSS+VGRILTRG H+MLRY+D+  A+PS   
Sbjct: 351 HSKCRSVYQPEGVCVGKPAPHIEIKISLDGSSNVGRILTRGPHLMLRYYDKISARPSNDA 410

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
            +VW DTGDIGSIDD GN+WLVGR NGRIKSGGEN+YPEEVE +LLQHPG+   VV+GI 
Sbjct: 411 NDVWFDTGDIGSIDDNGNLWLVGRSNGRIKSGGENIYPEEVERILLQHPGVKRCVVIGIP 470

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
           ++RLTE  VACV+L E WQW E+N +      +  LSS +LR+HC + NLTGFK P+ F+
Sbjct: 471 DSRLTEKTVACVQLEEDWQWYETNHELLRGKIKQHLSSAILREHCMKCNLTGFKVPKEFI 530

Query: 301 LWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
            W KPFP+TS GK +RD +R EV+SHL+ L S L
Sbjct: 531 KWGKPFPVTSMGKFKRDAIRNEVISHLRLLRSTL 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511136|ref|XP_004163873.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like [Cucumis sativus]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/342 (60%), Positives = 261/342 (76%), Gaps = 8/342 (2%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +AMLM+GA H+ IPKFE KSA+EA++ + VTSLITVPA+MADL +LIR +   K R+SVK
Sbjct: 231 IAMLMLGARHILIPKFEVKSAVEAIDLYGVTSLITVPAMMADLVSLIRERDNGKTRESVK 290

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYG--------MTETSSSLTFMTLYDPTLETP 112
           KILNGGGGLP EL+K+A + FP+AKL+SAYG        MTET SSLTF+ L DP  ET 
Sbjct: 291 KILNGGGGLPLELIKDAVSIFPRAKLVSAYGSAFVPHCWMTETCSSLTFLMLCDPMGETS 350

Query: 113 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQF 172
               Q++ +    SV+QP+GVCVGKPAPH+E+K+  DGSS+VGRILTRG H+MLRY+D+ 
Sbjct: 351 VPHFQSYEHSKCRSVYQPEGVCVGKPAPHIEIKISLDGSSNVGRILTRGPHLMLRYYDKI 410

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A+PS    +VW DTGDIGSIDD GN+WLVGR NGRIKSGGEN+YPEEVE +LLQHPG+ 
Sbjct: 411 SARPSNDANDVWFDTGDIGSIDDNGNLWLVGRSNGRIKSGGENIYPEEVERILLQHPGVK 470

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
             VV+GI ++RLTE  VACV+L E+WQW E+N +      +  LSS +LR+HC + NLTG
Sbjct: 471 RCVVIGIPDSRLTEKTVACVQLEENWQWYETNHELLRGKIKQHLSSAILREHCMKCNLTG 530

Query: 293 FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
           FK P+ F+ W KPFP+TS GK +RD +R EV+SHL+ L S L
Sbjct: 531 FKVPKEFIKWGKPFPVTSMGKFKRDAIRNEVISHLRLLRSTL 572

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448509|ref|XP_003594530.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|355483578|gb|AES64781.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/343 (60%), Positives = 259/343 (75%), Gaps = 15/343 (4%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           MAMLMVG CHVF+PKF+++ A+  +E++ VTSLITVPAIM  L +++R K+TWKG ++VK
Sbjct: 226 MAMLMVGGCHVFMPKFDAELAVGDIERYNVTSLITVPAIMTSLISIVRRKETWKGGETVK 285

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYG--------MTETSSSLTFMTLYDPTLETP 112
           KILNGGG L  EL+K+    F KAKLISAYG        MTE  SSLTF+TLYDP  +T 
Sbjct: 286 KILNGGGSLSFELIKDTHIFFHKAKLISAYGRSFLTQCWMTEACSSLTFLTLYDPMQKTI 345

Query: 113 GQLPQAFGNV-TPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 171
               Q +G   + + +HQPQGVCVGK APHVELK+C DG +  GRILTRG H+MLRYWDQ
Sbjct: 346 SHPFQTYGEEESKHLIHQPQGVCVGKAAPHVELKICKDGDT--GRILTRGPHLMLRYWDQ 403

Query: 172 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
            L   S    EVW DTGDIG +D  GN+WL+GR NGRIKSGGEN+YPEEVEA+LL+HPGI
Sbjct: 404 TLTNTSNQRSEVWFDTGDIGLMDCHGNLWLLGRTNGRIKSGGENIYPEEVEAILLEHPGI 463

Query: 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
             +V+VGI +AR TEMV AC++ RE+WQW E     S+ N+E  LS + L+Q+C E NL+
Sbjct: 464 ARVVIVGIPDARFTEMVAACIQPRENWQWLE----HSTSNEEFHLSRKNLQQYCLENNLS 519

Query: 292 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
            FK P++F+ WRKPFPLT+TGKIRRD+VR+EV+S ++SL SNL
Sbjct: 520 RFKIPKIFIEWRKPFPLTTTGKIRRDQVRKEVLSEIQSLHSNL 562

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555887|ref|XP_003546261.1| PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal-like isoform 2 [Glycine max]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/343 (58%), Positives = 245/343 (71%), Gaps = 37/343 (10%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV---------KK 51
           M MLMVG CHV +PKF+++SA++A+EQH VTS ITVPAIMA L ++IR          K+
Sbjct: 230 MTMLMVGGCHVLMPKFDAESAVDAIEQHAVTSFITVPAIMASLISIIRYIPVFNIFRHKE 289

Query: 52  TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLET 111
           TWKG ++VKKILNGG                         MTET SSLTF+TLYDP  ET
Sbjct: 290 TWKGGETVKKILNGG-------------------------MTETCSSLTFLTLYDPMHET 324

Query: 112 PGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 171
             Q  QAFG      +HQ QGVC+GK APH+ELK+ +D S H GRILTRG H+MLRYWDQ
Sbjct: 325 TNQSLQAFGVAGSKLIHQQQGVCIGKAAPHIELKISADASGHTGRILTRGPHIMLRYWDQ 384

Query: 172 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
            L  P       WLDTGDIGSID  GN+WL+GR NGRIKSGGEN+YPEEVEA+L QHPGI
Sbjct: 385 TLTNPLNPNKRAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILQQHPGI 444

Query: 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
             +VVVGI +A LTEMV AC++LRE+WQWSE     S+ N+E LLS + ++Q+C E +L+
Sbjct: 445 ASVVVVGIPDAHLTEMVAACIQLRENWQWSE---QLSASNEEFLLSRKNIQQYCIENHLS 501

Query: 292 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
            FK P++F++WRKPFPLT+ GKI+RD+VR+EVMS L+SL SNL
Sbjct: 502 RFKIPKMFIVWRKPFPLTTIGKIKRDQVRKEVMSQLQSLHSNL 544

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2028165	560	AAE14 "acyl-activating enzyme	0.964	0.575	0.536	6.7e-88
UNIPROTKB|E1BS15	589	ACSF2 "Uncharacterized protein	0.703	0.398	0.285	7.7e-21
TIGR_CMR|CPS_0661	520	CPS_0661 "AMP-binding enzyme f	0.724	0.465	0.270	3.6e-20
UNIPROTKB|E1BVI3	593	ACSF2 "Uncharacterized protein	0.703	0.396	0.285	2.3e-19
MGI|MGI:2388287	615	Acsf2 "acyl-CoA synthetase fam	0.706	0.383	0.281	4.5e-19
UNIPROTKB|F1PTR3	612	ACSF2 "Uncharacterized protein	0.724	0.395	0.273	1.2e-18
UNIPROTKB|G1K208	614	ACSF2 "Acyl-CoA synthetase fam	0.706	0.384	0.279	5.5e-17
UNIPROTKB|Q17QJ1	615	ACSF2 "Acyl-CoA synthetase fam	0.706	0.383	0.279	5.6e-17
UNIPROTKB|F1RT96	609	ACSF2 "Uncharacterized protein	0.709	0.389	0.265	1.3e-16
UNIPROTKB|B4DUF5	455	ACSF2 "Acyl-CoA synthetase fam	0.709	0.520	0.265	2.3e-16

TAIR|locus:2028165 AAE14 "acyl-activating enzyme 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 183/341 (53%), Positives = 225/341 (65%)

Query:     1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
             MAMLMVGACHV +PKF++K+AL+ +EQ+ +T  ITVPA+MADL  + R  K       V+
Sbjct:   232 MAMLMVGACHVLLPKFDAKTALQVMEQNHITCFITVPAMMADLIRVNRTTKNGAENRGVR 291

Query:    61 KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
             KILNGGG L SEL+KEA N FP A+++SAYGMTE  SSLTFMTL+DPT E+       F 
Sbjct:   292 KILNGGGSLSSELLKEAVNIFPCARILSAYGMTEACSSLTFMTLHDPTQES-------F- 343

Query:   121 NVTPNSVHQP-QGVCVGKPAPHVELKVCSD-GSSHVGRILTRGAHVMLRYWDQFLAKPSV 178
              VT   ++QP QG CVGKPAPH+EL V  D  SS VG+ILTRG H MLRYW   +A+ +V
Sbjct:   344 KVTYPLLNQPKQGTCVGKPAPHIELMVKLDEDSSRVGKILTRGPHTMLRYWGHQVAQENV 403

Query:   179 STGE-----VWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXX 233
              T E      WL            N+WL+GR NGRIK+GGENVYPEEVEAVL++HP    
Sbjct:   404 ETSESRSNEAWLDTGDIGAFDEFGNLWLIGRSNGRIKTGGENVYPEEVEAVLVEHPGIVS 463

Query:   234 XXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGF 293
                    + RL EMVVACVRL+E W WS    D               + HCR +NLTGF
Sbjct:   464 AVVIGVIDTRLGEMVVACVRLQEKWIWS----DVENRKGSFQLSSETLKHHCRTQNLTGF 519

Query:   294 KAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
             K P+ FV W K FPLT+TGK++RDEVRR+V+SH + + S+L
Sbjct:   520 KIPKRFVRWEKQFPLTTTGKVKRDEVRRQVLSHFQIMTSSL 560

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0008756 "o-succinylbenzoate-CoA ligase activity" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0042372 "phylloquinone biosynthetic process" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

UNIPROTKB|E1BS15 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 215 (80.7 bits), Expect = 7.7e-21, Sum P(2) = 7.7e-21
 Identities = 73/256 (28%), Positives = 111/256 (43%)

Query:     5 MVGACH----VF-IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
             MV A H    VF  P FE K+ LEAV Q   + L   P +  D+  L +         S+
Sbjct:   294 MVSALHGSSCVFSAPSFEGKATLEAVSQEKCSFLHGTPTMFIDM--LSQPDFDSYNLSSL 351

Query:    60 KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
             +  +  G  +P E+MK  +      +++ AYG TE +S +TFM    PT +   +  +  
Sbjct:   352 RGGVIAGSPVPPEIMKVVSTKMHMPEVMVAYGTTE-NSPVTFMGF--PTDDITRRT-ETV 407

Query:   120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVS 179
             G++ P++  + +     KP P           +  G +  RG  VML YW+       V 
Sbjct:   408 GSILPHTEAKIEDPETRKPVP----------LNTPGELQVRGYCVMLGYWNDSARTREVI 457

Query:   180 TGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXX 239
             + + W                ++GR    I  GGEN+YP E+E  L  HP          
Sbjct:   458 SDDNWYKTGDIATLDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGV 517

Query:   240 ANARLTEMVVACVRLR 255
              ++R+ E V AC+RLR
Sbjct:   518 KDSRMGEEVCACIRLR 533

GO:0003824 "catalytic activity" evidence=IEA

TIGR_CMR|CPS_0661 CPS_0661 "AMP-binding enzyme family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 210 (79.0 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
 Identities = 69/255 (27%), Positives = 105/255 (41%)

Query:     2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 61
             AM++ G   VF+P FE+ S +EA+E   V  ++ VP ++  +     +        S+K 
Sbjct:   220 AMVIGGLSQVFVPYFEATSVIEAIEHKQVNHVLLVPTMVTMMLATPALDNA--NFSSLKH 277

Query:    62 ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 121
             I+ G   +P   +  A       K I AYG +E S  ++ +      LE P       G 
Sbjct:   278 IIYGASPMPEGTLIAAMEKMSSVKFIQAYGQSELSPVISILPAEYHVLEGPNA-----GK 332

Query:   122 VTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG 181
             +   S  +P   CV         KV   G   VG I   G + ML YW+    + + +  
Sbjct:   333 L--RSAGRP-AYCVSVEMRDENGKVLPTGK--VGEIAASGPNSMLGYWNN-TEQTAATLI 386

Query:   182 EVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXAN 241
             + W+             ++LV R    I +GGENV+  EVE  L  HP           +
Sbjct:   387 DGWVLTGDAGYMDEDGFIFLVDRLKDMIVTGGENVFSAEVENALSHHPAIQESVVLGIPS 446

Query:   242 ARLTEMVVACVRLRE 256
              +  E V A +RL E
Sbjct:   447 EQWGESVHAILRLNE 461

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|E1BVI3 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 215 (80.7 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
 Identities = 73/256 (28%), Positives = 111/256 (43%)

Query:     5 MVGACH----VF-IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
             MV A H    VF  P FE K+ LEAV Q   + L   P +  D+  L +         S+
Sbjct:   294 MVSALHGSSCVFSAPSFEGKATLEAVSQEKCSFLHGTPTMFIDM--LSQPDFDSYNLSSL 351

Query:    60 KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
             +  +  G  +P E+MK  +      +++ AYG TE +S +TFM    PT +   +  +  
Sbjct:   352 RGGVIAGSPVPPEIMKVVSTKMHMPEVMVAYGTTE-NSPVTFMGF--PTDDITRRT-ETV 407

Query:   120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVS 179
             G++ P++  + +     KP P           +  G +  RG  VML YW+       V 
Sbjct:   408 GSILPHTEAKIEDPETRKPVP----------LNTPGELQVRGYCVMLGYWNDSARTREVI 457

Query:   180 TGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXX 239
             + + W                ++GR    I  GGEN+YP E+E  L  HP          
Sbjct:   458 SDDNWYKTGDIATLDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGV 517

Query:   240 ANARLTEMVVACVRLR 255
              ++R+ E V AC+RLR
Sbjct:   518 KDSRMGEEVCACIRLR 533

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:2388287 Acsf2 "acyl-CoA synthetase family member 2" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
 Identities = 73/259 (28%), Positives = 109/259 (42%)

Query:     1 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-- 57
             M  +M GA  +   P F  K ALEA+ +   T L   P +  D+      +  +   D  
Sbjct:   320 MVSMMHGATLLLSSPSFNGKKALEAISREKGTLLYGTPTMFVDILN----QPDFSSYDFT 375

Query:    58 SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
             S++  +  G   P EL++   N     +L+  YG TE +S +TFM   + TLE   Q   
Sbjct:   376 SIRGGVIAGSPAPPELIRAIINKMNMKELVVVYGTTE-NSPVTFMNFPEDTLE---QKAG 431

Query:   118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 177
             + G + P++  Q   V  G+      L V        G +  RG  VM  YW +   K  
Sbjct:   432 SVGRIMPHTEAQIVNVETGELT---NLNV-------PGELYIRGYCVMQGYWGE-PQKTF 480

Query:   178 VSTGE-VWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXX 236
              + G+  W                +VGR    I  GGEN+YP E+E   L+HP       
Sbjct:   481 ETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQV 540

Query:   237 XXXANARLTEMVVACVRLR 255
                 + R+ E + AC+RL+
Sbjct:   541 VGVKDERMGEEICACIRLK 559

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|F1PTR3 ACSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 206 (77.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 73/267 (27%), Positives = 112/267 (41%)

Query:     1 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
             M  +M G   +   P F  K ALEA+ +   + L   P +  D+      +  +   D +
Sbjct:   314 MVSVMYGTTLILSSPTFNGKKALEAISKERGSFLYGTPTMFVDILN----QPDFSSYD-I 368

Query:    60 KKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 116
               I  G   G   P EL++   +      L+ AYG TE +S +TFM   + T+E   Q  
Sbjct:   369 STIRGGVIAGSPAPPELIRTIIDKLNMKDLVVAYGTTE-NSPVTFMNFEEDTVE---QKA 424

Query:   117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 176
             +  G + P++  Q   +  G     VEL          G +  RG  VML YW +   K 
Sbjct:   425 ETVGRILPHTEAQIVNMKTGNL---VELNT-------PGELFIRGYCVMLGYWGE-PEKT 473

Query:   177 SVSTG-EVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 235
               + G + W                +VGR    I  GGEN+YP E+E    +HP      
Sbjct:   474 KEAIGPDKWYRTGDIAAIDKQGFCKIVGRSKDMIIRGGENIYPAELEDFFHKHPQVLEVQ 533

Query:   236 XXXXANARLTEMVVACVRLRESWQWSE 262
                  +AR+ E + AC+RL++  + +E
Sbjct:   534 VVGVKDARMGEEICACIRLKKGEKTTE 560

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|G1K208 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
 Identities = 73/261 (27%), Positives = 106/261 (40%)

Query:     1 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
             M  LM G   +   P FE K  LEA+ +     L   P +  D+      +  +   D +
Sbjct:   319 MVSLMHGVTLILCSPVFEGKKTLEAISRERGCFLYGTPTMFVDVLN----QPDFSSYD-I 373

Query:    60 KKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 116
               +  G   G   P EL++   N     +L+ AYG TE +S +TFM   + T+E   Q  
Sbjct:   374 STMRGGVIAGSPAPPELIRAIINKLNMKELVVAYGTTE-NSPVTFMNFTEDTVE---QKA 429

Query:   117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 176
             ++ G V P++  Q      G      EL          G +  RG  VML YW +   K 
Sbjct:   430 ESVGRVMPHTEAQIVNTETGTLT---ELNT-------PGELCIRGYCVMLGYWGE-PQKT 478

Query:   177 SVSTGE-VWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 235
               + G+  W                +VGR    I  GGEN+YP E+E     HP      
Sbjct:   479 EEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQ 538

Query:   236 XXXXANARLTEMVVACVRLRE 256
                  + R+ E + AC+RL+E
Sbjct:   539 VVGVKDDRMGEEICACIRLKE 559

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q17QJ1 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
 Identities = 73/261 (27%), Positives = 106/261 (40%)

Query:     1 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
             M  LM G   +   P FE K  LEA+ +     L   P +  D+      +  +   D +
Sbjct:   320 MVSLMHGVTLILCSPVFEGKKTLEAISRERGCFLYGTPTMFVDVLN----QPDFSSYD-I 374

Query:    60 KKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 116
               +  G   G   P EL++   N     +L+ AYG TE +S +TFM   + T+E   Q  
Sbjct:   375 STMRGGVIAGSPAPPELIRAIINKLNMKELVVAYGTTE-NSPVTFMNFTEDTVE---QKA 430

Query:   117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 176
             ++ G V P++  Q      G      EL          G +  RG  VML YW +   K 
Sbjct:   431 ESVGRVMPHTEAQIVNTETGTLT---ELNT-------PGELCIRGYCVMLGYWGE-PQKT 479

Query:   177 SVSTGE-VWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXX 235
               + G+  W                +VGR    I  GGEN+YP E+E     HP      
Sbjct:   480 EEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQ 539

Query:   236 XXXXANARLTEMVVACVRLRE 256
                  + R+ E + AC+RL+E
Sbjct:   540 VVGVKDDRMGEEICACIRLKE 560

GO:0005739 "mitochondrion" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RT96 ACSF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 69/260 (26%), Positives = 110/260 (42%)

Query:     1 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
             M  LM G   +   P F+ K ALEA+ +   + L   P +  D+      +  +   D +
Sbjct:   314 MVSLMHGVTLILSSPVFDGKKALEAISRERGSFLYGTPTMFVDILN----QPDFSSYD-I 368

Query:    60 KKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 116
               I  G   G  +P EL++   N     +L+ AYG TE +S +TFM   + T+E   Q  
Sbjct:   369 SAICGGVIAGSPVPPELIRAIINKMNMKELVVAYGTTE-NSPVTFMNFPEDTME---QKA 424

Query:   117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 176
             ++ G V P++  Q           ++E +  ++ ++  G +  RG  VM  YW       
Sbjct:   425 ESVGRVMPHTEAQIM---------NMETRTLAELNTP-GELCIRGYCVMQGYWGDPQKTD 474

Query:   177 SVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXX 236
              V   + W                +VGR    I  GGEN+YP E+E     HP       
Sbjct:   475 EVIGQDKWYRTGDIAVMDEQGFCRIVGRAKDMIIRGGENIYPAELEDFFHTHPQVQDVQV 534

Query:   237 XXXANARLTEMVVACVRLRE 256
                 + R+ E + AC+RL++
Sbjct:   535 VGVKDNRMGEEICACIRLKK 554

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|B4DUF5 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
 Identities = 69/260 (26%), Positives = 106/260 (40%)

Query:     1 MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
             M  LM GA  +   P F  K ALEA+ +   T L   P +  D+      +  +   D +
Sbjct:   160 MMCLMYGATLILASPIFNGKKALEAISRERGTFLYGTPTMFVDILN----QPDFSSYD-I 214

Query:    60 KKILNG---GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 116
               +  G   G   P EL++   N      L+ AYG TE +S +TF    + T+E   Q  
Sbjct:   215 STMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTE-NSPVTFAHFPEDTVE---QKA 270

Query:   117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 176
             ++ G + P++  +   +  G  A     K+ + G      +  RG  VML YW +     
Sbjct:   271 ESVGRIMPHTEARIMNMEAGTLA-----KLNTPGE-----LCIRGYCVMLGYWGEPQKTE 320

Query:   177 SVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXX 236
                  + W                +VGR    I  GGEN+YP E+E     HP       
Sbjct:   321 EAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQV 380

Query:   237 XXXANARLTEMVVACVRLRE 256
                 + R+ E + AC+RL++
Sbjct:   381 VGVKDDRMGEEICACIRLKD 400

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	0.0
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	7e-75
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-68
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-61
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-60
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	1e-53
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	9e-53
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-49
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	8e-47
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-45
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	4e-41
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	8e-41
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-40
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	3e-40
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-40
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-39
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	7e-39
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-36
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-36
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	4e-36
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	5e-36
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-35
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-35
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-34
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	3e-34
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	4e-34
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-32
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-30
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-30
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	9e-30
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-28
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	8e-28
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-27
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	3e-27
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-27
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-27
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	5e-27
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-27
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	7e-27
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-26
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	1e-26
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-26
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-26
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-26
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	9e-26
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-25
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	6e-25
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	6e-25
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	6e-25
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-24
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-24
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	6e-24
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-23
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	5e-23
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	6e-23
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	7e-23
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	9e-23
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	9e-23
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-22
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	6e-22
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	7e-22
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-21
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	1e-21
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-21
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	3e-21
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	7e-21
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	7e-21
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	8e-21
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-20
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	4e-20
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	5e-20
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-19
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-19
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-19
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	3e-19
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	4e-19
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-18
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-17
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	1e-17
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-17
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-16
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	3e-16
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-16
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	5e-16
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	6e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	6e-16
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-15
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	3e-15
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-15
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-15
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	6e-15
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	7e-15
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	3e-14
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-14
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-14
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	5e-14
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	6e-14
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	6e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	6e-14
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	7e-14
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	8e-14
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	2e-13
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-13
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	3e-13
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	4e-13
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-12
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-12
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-12
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-12
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-12
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	6e-12
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	7e-12
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	7e-12
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-11
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	9e-11
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-10
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	4e-10
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	6e-10
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-09
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-09
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-09
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	4e-09
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	4e-09
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	9e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-08
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-08
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	3e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	4e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-08
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	5e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-07
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	4e-07
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	4e-07
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	4e-07
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	7e-07
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	7e-07
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	8e-07
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-07
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-06
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-06
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	7e-06
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	7e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-05
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-05
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	4e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	7e-05
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-04
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	2e-04
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-04
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	6e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	0.004

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  575 bits (1483), Expect = 0.0
 Identities = 226/334 (67%), Positives = 265/334 (79%), Gaps = 2/334 (0%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +AMLMVGACHV +PKF++K+AL+A++QH VTS+ITVPA+MADL +L R   TWK   SV+
Sbjct: 232 LAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVR 291

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           KILNGGG L S L+ +A   FP AKL SAYGMTE  SSLTFMTL+DPTLE+P Q  Q   
Sbjct: 292 KILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVN 351

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST 180
               +SVHQPQGVCVGKPAPHVELK+  D SS VGRILTRG HVML YW Q     SV +
Sbjct: 352 QTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSETASVLS 411

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
            + WLDTGDIG ID  GN+WL+GR N RIK+GGENVYPEEVEAVL QHPG+  +VVVG+ 
Sbjct: 412 NDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVP 471

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
           ++RLTEMVVACVRLR+ W WS++  ++ +  K L LSSE LR HCREKNL+ FK P+LFV
Sbjct: 472 DSRLTEMVVACVRLRDGWIWSDN--EKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFV 529

Query: 301 LWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
            WRKPFPLT+TGKIRRDEVRREV+SHL+SLPSNL
Sbjct: 530 QWRKPFPLTTTGKIRRDEVRREVLSHLQSLPSNL 563

Length = 563

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  233 bits (598), Expect = 7e-75
 Identities = 104/327 (31%), Positives = 154/327 (47%), Gaps = 49/327 (14%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +A L  GA  V + KF+  +AL  +E+  +T+L  VP +   L         +   D  S
Sbjct: 63  LASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPD----FDKFDLSS 118

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++  ++GG  +P EL++     FP A++ + YGMTETS   T  +  DP  + PG     
Sbjct: 119 LRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPG----- 173

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFL 173
                           VG+P P VE+K+       V     G I  RG  VM  Y++   
Sbjct: 174 ---------------TVGRPLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPE 218

Query: 174 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233
           A       + WL TGD+G +D+ G + +VGR    I  GGEN+YP E+E  LL HP +  
Sbjct: 219 ATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAE 278

Query: 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 293
             VVG+ + RL E+V A V L+                    L+ E L   CR + L  F
Sbjct: 279 AAVVGVPDERLGEVVAAFVVLKP--------------GAT--LTEEELIAFCRGR-LARF 321

Query: 294 KAPRLFVLWRKPFPLTSTGKIRRDEVR 320
           K PR +V +    P T++GKI++ ++R
Sbjct: 322 KVPR-YVRFVDELPRTASGKIQKFKLR 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  217 bits (555), Expect = 1e-68
 Identities = 98/321 (30%), Positives = 143/321 (44%), Gaps = 49/321 (15%)

Query: 1   MAMLMVGACHVFIPKFES-KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
           +  L+ G   V    F    S LE +EQ+ VT L  VP +   LA     +       S+
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGY--DLSSL 118

Query: 60  KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           + +++GG  L  EL++      P A ++  YG+TETS           T   P       
Sbjct: 119 RLLISGGEPLSPELLERF-EERPGAPILEGYGLTETSVV---------TSTNPDS----- 163

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH-----VGRILTRGAHVMLRYWDQFLA 174
                      +   VG+P P VE++V  +         VG ++ RG  VM  YW+    
Sbjct: 164 --------ELKKPGTVGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPE 215

Query: 175 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 234
             + +T + W  TGD+G +D+ G +++ GR    IK GGENVYP EVE+VLLQHP +   
Sbjct: 216 TTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEA 275

Query: 235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 294
            VVG+ +    E +VA V LR                      +E L+ H RE  L  +K
Sbjct: 276 AVVGVPDEDRGERIVAFVVLRPGAD----------------ALAEELKAHLRE-RLAPYK 318

Query: 295 APRLFVLWRKPFPLTSTGKIR 315
            PR  + +    P T++GKI 
Sbjct: 319 VPR-VIEFVDELPKTASGKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  198 bits (507), Expect = 3e-61
 Identities = 100/327 (30%), Positives = 153/327 (46%), Gaps = 52/327 (15%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +  L  G   V +PKF+ ++ L+ +E+H VT    VP +   L  L    +     D  S
Sbjct: 61  LPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARY----DLSS 116

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++ I+ G   +P+EL K A   +     +  YGMTET  + T ++  +  L   G     
Sbjct: 117 LRLIIYGAAPMPAEL-KRAMIEWFGPVFVQGYGMTETGPTTTLLSP-EDWLRKLG----- 169

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFL 173
                  SV        G+P P VE+++  +         VG I+ RG  VM  YW++  
Sbjct: 170 -------SV--------GRPVPGVEVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNR-P 213

Query: 174 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233
              + +  + WL TGD+G +D+ G +++V R+   I SGGEN+YP EVE VLL HP +  
Sbjct: 214 EATAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVAD 273

Query: 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 293
           + V+G+ +    E VVA V LR                    L +E L   CRE+ L G+
Sbjct: 274 VAVIGVPDEEWGEAVVAVVVLRPGAT----------------LDAEELIAFCRER-LAGY 316

Query: 294 KAPRLFVLWRKPFPLTSTGKIRRDEVR 320
           K P+         P  ++GKI + E+R
Sbjct: 317 KVPKSVEF-VDELPRNASGKILKRELR 342

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  202 bits (515), Expect = 1e-60
 Identities = 105/329 (31%), Positives = 155/329 (47%), Gaps = 45/329 (13%)

Query: 1   MAMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS 58
           +A L+ G   V +    F+ +  L  +E++ VT L  VP  + +L              S
Sbjct: 234 LAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDD-DLSSS 292

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++ +L+GG  LP EL++     F    ++  YG+TETS  +T     D  L  PG     
Sbjct: 293 LRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPP-DDLLAKPG----- 346

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLRYWDQFL 173
                           VG+P P VE+++            VG I  RG +VM  YW++  
Sbjct: 347 ---------------SVGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPE 391

Query: 174 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233
           A       + WL TGD+G +D+ G +++VGR    I SGGEN+YPEE+EAVL +HP +  
Sbjct: 392 ATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAE 451

Query: 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 293
             VVG+ + R  E VVA V L+                 +  L++E LR   R K L  +
Sbjct: 452 AAVVGVPDERWGERVVAVVVLKPGG--------------DAELTAEELRAFLR-KRLALY 496

Query: 294 KAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
           K PR+ V   +  P T++GKI R  +R E
Sbjct: 497 KVPRIVVFVDE-LPRTASGKIDRRALREE 524

Length = 534

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  180 bits (460), Expect = 1e-53
 Identities = 98/321 (30%), Positives = 148/321 (46%), Gaps = 56/321 (17%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIR-VKKTWKG-RDSVKK 61
           L+ G   V   KF++++  EA+E H VT +  VP        L R ++        S++ 
Sbjct: 140 LLAGGALVLPDKFDAEAIAEALENHGVTHISLVPT------QLQRLLESLGARWLSSLRA 193

Query: 62  ILNGGGGLPSELMKEATN-SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +L GG  +P  L+++A     P   L   YGMTET+S +        TL+     P  F 
Sbjct: 194 VLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVA-------TLK-----PDDFL 238

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST 180
               +         VGKP P  EL++ +      G IL RG  + L Y  Q    P +  
Sbjct: 239 AKLGS---------VGKPLPGRELRIVNPQ---DGEILVRGPSLFLGYLPQGGLTPPL-D 285

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
            + W  TGD+G +D  G ++++GRR+  I SGGEN+YPEE+EAVLLQHP +    VVG+ 
Sbjct: 286 EDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVP 345

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
           +    +  VA V   +                   +S E L+    +K L  +K P+ + 
Sbjct: 346 DDEWGQRPVAFVVPNDD-----------------PVSVEELQAFLADK-LAKYKRPKRWY 387

Query: 301 LWRKPFPLTSTGKIRRDEVRR 321
                 P  ++GKI R  +R+
Sbjct: 388 PLP-ELPRNASGKIDRAALRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  180 bits (458), Expect = 9e-53
 Identities = 102/332 (30%), Positives = 147/332 (44%), Gaps = 63/332 (18%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L +GA +V +P F   + L+ ++++  T    VP +   L      KK      S++
Sbjct: 188 LLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFS--SLR 245

Query: 61  KILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
             ++GG  LP E+    +E T     A L+  YG+TETS   T           P    +
Sbjct: 246 LCISGGAPLPVEVAERFEEKTG----APLVEGYGLTETSPVTTV---------NPLDGER 292

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQF 172
             G++             G P P  E+K+  D         VG ++ RG  VM  YW++ 
Sbjct: 293 KPGSI-------------GLPLPGTEVKIVDDEGNELPPGEVGELVVRGPQVMKGYWNR- 338

Query: 173 LAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 228
              P   T EV    WL TGDIG +D+ G  ++V R+   I  GG NVYP E+E VL  H
Sbjct: 339 ---PE-ETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSH 394

Query: 229 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 288
           P ++   VVG+ +    E V A V L+E           S       L+ E L   CRE+
Sbjct: 395 PAVLEAAVVGVPDPYRGEAVKAFVVLKE---------GAS-------LTEEELIAFCRER 438

Query: 289 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 320
            L  +K PR     R   P ++ GKI R E+R
Sbjct: 439 -LAAYKVPRQVEF-RDELPKSAVGKILRRELR 468

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  172 bits (439), Expect = 2e-49
 Identities = 99/333 (29%), Positives = 145/333 (43%), Gaps = 52/333 (15%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
              LM GA  V   +F+ ++ L+ +E   VT    VP I   L    R         S++
Sbjct: 227 YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFS--SLR 284

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            ++ GG  LP  L++E    F    L+  YGMTETS  ++ +    P  + PGQ  +   
Sbjct: 285 LVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLP---PEDQLPGQWTKR-- 338

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC--------SDGSSHVGRILTRGAHVMLRYWDQF 172
                          G+P P VE ++          DG   VG I+ RG  +M  YW++ 
Sbjct: 339 ------------RSAGRPLPGVEARIVDDDGDELPPDGGE-VGEIIVRGPWLMQGYWNRP 385

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A      G  WL TGD+G ID+ G +++  R    I SGGEN+YP E+E  L  HP + 
Sbjct: 386 EATAETIDGG-WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVA 444

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
            + V+G+ + +  E  VA V L+                    L ++ LR   R + L  
Sbjct: 445 EVAVIGVPDEKWGERPVAVVVLKPGAT----------------LDAKELRAFLRGR-LAK 487

Query: 293 FKAPR--LFVLWRKPFPLTSTGKIRRDEVRREV 323
           FK P+   FV      P TS GKI +  +R + 
Sbjct: 488 FKLPKRIAFV---DELPRTSVGKILKRVLREQY 517

Length = 521

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  161 bits (409), Expect = 8e-47
 Identities = 99/331 (29%), Positives = 153/331 (46%), Gaps = 59/331 (17%)

Query: 4   LMVGACHVFIPKFE-SKSALEAVEQHCVTSLITVP---AIMADLATLIRVKKTWKGRDSV 59
             VG   V   +F   +  L+ + +  +T    VP   A +  L  L R         S+
Sbjct: 65  FRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDF-----PSL 119

Query: 60  KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           + + N GG LP++ + +   +FP AKL S YG+TE      F + Y P    P +L    
Sbjct: 120 RYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEA-----FRSTYLP----PEEL---- 166

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSSH----VGRILTRGAHVMLRYWDQFLA 174
            +  P+S+        GK  P+VEL V   DG+      VG ++ RGA+VM  YW+   A
Sbjct: 167 -DRRPDSI--------GKAIPNVELWVVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEA 217

Query: 175 -----KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
                +P    GE+ L TGD+  +D+ G ++ VGR++  IK+ G  V P E+E V+  HP
Sbjct: 218 TAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHP 277

Query: 230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKN 289
            +    V+G+ +  L + +VA V                S + E L   E+L+ HCR K+
Sbjct: 278 LVAEAAVIGVPDPLLGQAIVAVV---------------VSADGESLDEKELLK-HCR-KH 320

Query: 290 LTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 320
           L  +  P   V +    P  + GK+ R  +R
Sbjct: 321 LPNYMVPAEIV-FVDSLPKNANGKVDRSALR 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  159 bits (404), Expect = 2e-45
 Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 32/245 (13%)

Query: 1   MAMLMVGACHVFIPKFES--KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS 58
              L+ G   V +PKF       L+ +E++ VT L  VP ++  L      KK      S
Sbjct: 191 FGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEEKK--YDLSS 248

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++ +L+GG  LP EL++     F    L++ YG TET+   T     DP ++        
Sbjct: 249 LRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKP------- 301

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFL 173
                           +G+P P VE+KV  +    V     G +  RG  V   Y +   
Sbjct: 302 --------------GSIGRPLPGVEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPE 347

Query: 174 AKPSVSTGEVWL--DTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
                   + W    TGD+G  D+ G + ++GR++ ++K  GE + P E+EAVLL+HPG+
Sbjct: 348 LTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGV 407

Query: 232 IGIVV 236
               V
Sbjct: 408 AEAAV 412

Length = 412

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  150 bits (381), Expect = 4e-41
 Identities = 105/361 (29%), Positives = 155/361 (42%), Gaps = 99/361 (27%)

Query: 1   MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAI-----------MADLATLIR 48
           +A +  GA  V+    F+  + L AVE+   T+L  VP +             DL++L  
Sbjct: 260 LACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSL-- 317

Query: 49  VKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPT 108
             +T  G      I+  G   P E+MK   +    +++  AYGMTETS  ++  T  D  
Sbjct: 318 --RT--G------IM-AGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSP-VSTQTRTDDP 365

Query: 109 LE----TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV------GRIL 158
           LE    T                       VG+  PH+E+K+    +         G + 
Sbjct: 366 LEKRVTT-----------------------VGRALPHLEVKIVDPETGETVPRGEQGELC 402

Query: 159 TRGAHVMLRYWDQFLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGRIKS-- 211
           TRG  VM  YW+         T E      W+ TGD+  +D+ G V +VGR    IK   
Sbjct: 403 TRGYSVMKGYWND-----PEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGR----IKDMI 453

Query: 212 --GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSS 269
             GGEN+YP E+E  L  HP I  + VVG+ + +  E V A + LR            + 
Sbjct: 454 IRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRP---------GAT- 503

Query: 270 KNKELLLSSEVLRQHCREKNLTGFKAPR--LFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
                 L+ E +R  CR K +  +K PR   FV     FP+T TGKI++ ++R  ++  L
Sbjct: 504 ------LTEEDVRDFCRGK-IAHYKIPRYIRFV---DEFPMTVTGKIQKFKMREMMIEEL 553

Query: 328 K 328
            
Sbjct: 554 G 554

Length = 559

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  148 bits (377), Expect = 8e-41
 Identities = 88/335 (26%), Positives = 139/335 (41%), Gaps = 67/335 (20%)

Query: 2   AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAI-----------MADLATLIRVK 50
           A LM GA  + +P F+       +E   +T L   P +             DL++L R+ 
Sbjct: 228 APLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSL-RLA 286

Query: 51  KTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLE 110
            T            G   +P  L++   +      +++ YG++E S   TF  L D    
Sbjct: 287 VT------------GAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT 334

Query: 111 TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVM 165
             G                     +G     VE K+ ++         VG +L RG +VM
Sbjct: 335 VAGT--------------------IGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVM 374

Query: 166 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 225
             Y+D   A  +    + WL TGD+G +D+ G +++V R+      GG NVYP EVE VL
Sbjct: 375 KGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVL 434

Query: 226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 285
            +HP +    V+G+ + RL E+  A V L+   +                L+ E L  +C
Sbjct: 435 YEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAE----------------LTEEELIAYC 478

Query: 286 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 320
           RE  L  +K PR  + +    P  +TGK+ +  +R
Sbjct: 479 REH-LAKYKVPR-SIEFLDELPKNATGKVLKRALR 511

Length = 513

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  148 bits (376), Expect = 2e-40
 Identities = 103/337 (30%), Positives = 159/337 (47%), Gaps = 47/337 (13%)

Query: 1   MAMLMVGACHVF-IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
           +  + VGAC V+    F+  + L+AVE+   T+L  VP +   +A L   ++      S+
Sbjct: 262 LGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF--IAELDHPQRGNFDLSSL 319

Query: 60  KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           +  +  G   P E+M+   +    A++  AYGMTETS  ++  T     LE         
Sbjct: 320 RTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSP-VSLQTTAADDLER-------- 370

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSS----HVGRILTRGAHVMLRYWDQFLA 174
             V            VG+  PH+E+KV   DG++     +G + TRG  VM  YW+   A
Sbjct: 371 -RVE----------TVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEA 419

Query: 175 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 234
                  + W+ TGD+ ++D+ G V +VGR    I  GGEN+YP E+E  L  HP +  +
Sbjct: 420 TAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADV 479

Query: 235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 294
            V G+ + +  E +VA VRL      SE                E LR+ C+ + +  FK
Sbjct: 480 QVFGVPDEKYGEEIVAWVRLHPGHAASE----------------EELREFCKAR-IAHFK 522

Query: 295 APRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLP 331
            PR F    + FP+T TGK+++    RE+     +LP
Sbjct: 523 VPRYFRFVDE-FPMTVTGKVQK-FRMREISIEELALP 557

Length = 558

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  146 bits (370), Expect = 3e-40
 Identities = 88/328 (26%), Positives = 135/328 (41%), Gaps = 57/328 (17%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKK 61
           L++GA  V   +++   ALE + +H VT  +     +ADL           G D  S++ 
Sbjct: 157 LLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAAADAA----GPDLPSLRV 212

Query: 62  ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 121
            L GG  +P EL + A  +   AK++ AYGMTE                           
Sbjct: 213 FLCGGAPVPRELARRAAEALG-AKVVRAYGMTEV------------------------PL 247

Query: 122 VTPNSVHQPQGVCV---GKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFL 173
           VT  +   P        G+P P VE+++  D  + V     G +  RG  + L Y D   
Sbjct: 248 VTVGTPDDPDDKRAATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRGPQLFLGYLDPPD 307

Query: 174 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233
                 T + W  TGD+G +D  G + + GR+   I  GGEN+   E+E +LL+HP +  
Sbjct: 308 NT-EAFTDDGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAE 366

Query: 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 293
           + VV + + RL E V A V                       L+   L +H   + L   
Sbjct: 367 VAVVAMPDERLGERVCAVVVPAPGAS----------------LTLAELTEHLAAQGLAKQ 410

Query: 294 KAPRLFVLWRKPFPLTSTGKIRRDEVRR 321
           K P    +     P T +GK+++ E+R 
Sbjct: 411 KWPERLEVVDA-LPRTPSGKVQKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  146 bits (370), Expect = 6e-40
 Identities = 93/333 (27%), Positives = 154/333 (46%), Gaps = 63/333 (18%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR--DS 58
           M  ++ G   V + KF+++   + ++   VT +  V  ++  L     +++  +G    S
Sbjct: 201 MRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRL-----LERLGEGTYPSS 255

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAK---LISAYGMTETSSSLTFMTLYDPTLETPGQL 115
            + +L GGG  P  L+++      K K   +  +YGMTET+S +  +TL           
Sbjct: 256 FRCMLLGGGPAPKPLLEQC-----KEKGIPVYQSYGMTETASQI--VTL----------- 297

Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILTRGAHVMLRYWDQ 171
                  +P       G   GKP    ELK+  DG        G I+ +G +V   Y ++
Sbjct: 298 -------SPEDALTKLG-SAGKPLFPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNR 349

Query: 172 FLA-KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230
             A + +   G  W  TGDIG +D+ G ++++ RR+  I SGGEN+YP E+E VLL HPG
Sbjct: 350 EDATRETFQDG--WFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPG 407

Query: 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290
           +    VVG+ + +  ++ VA V                       ++ E LR  C EK L
Sbjct: 408 VAEAGVVGVPDDKWGQVPVAFVVKSGE------------------VTEEELRHFCEEK-L 448

Query: 291 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREV 323
             +K P+ F    +  P  ++GK+ R E+++ V
Sbjct: 449 AKYKVPKRFYFVEE-LPRNASGKLLRHELKQLV 480

Length = 483

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  145 bits (368), Expect = 1e-39
 Identities = 99/322 (30%), Positives = 142/322 (44%), Gaps = 52/322 (16%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +A L+ GA  + +PKF+S++ L+ +E++ VTSL  VP I   LA    V K     D  S
Sbjct: 209 LASLLCGATVIIMPKFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVDKY----DLSS 264

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++ I +G   L  EL +E    FP   +   YGMTET  + T                  
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTP--------------- 309

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELK-VCSDGSSHVGR-----ILTRGAHVMLRYWDQF 172
            G+  P SV        G+  P+VE K V  DG   +G      +  +G  +M  Y +  
Sbjct: 310 PGDEKPGSV--------GRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNP 361

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A       + WL TGDIG  D+ GN ++V R+   IK  G  V P E+EAVLL+HP + 
Sbjct: 362 EATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVA 421

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              V+GI +    E+  A V L               K    L   EV  +    K +  
Sbjct: 422 DAAVIGIPDEVAGELPRAYVVL---------------KPGSKLTEQEV--KDYVAKKVAK 464

Query: 293 FKAPRLFVLWRKPFPLTSTGKI 314
           +K  R  V++    P + +GKI
Sbjct: 465 YKQLRGGVVFVDEIPKSPSGKI 486

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  142 bits (359), Expect = 7e-39
 Identities = 89/299 (29%), Positives = 133/299 (44%), Gaps = 53/299 (17%)

Query: 22  LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA-TNS 80
           LE +    VT +  VP        L R+       ++++KIL GG  +P+ L++EA    
Sbjct: 190 LEMIANERVTHISLVPT------QLNRLLDEGGHNENLRKILLGGSAIPAPLIEEAQQYG 243

Query: 81  FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAP 140
            P   +  +YGMTET S +T       T                          VG+P  
Sbjct: 244 LP---IYLSYGMTETCSQVT-------TATPEML---------------HARPDVGRPLA 278

Query: 141 HVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVW 200
             E+K+  D     G I+ +GA++M  Y  Q    P+    + W +TGDIG +D  G ++
Sbjct: 279 GREIKIKVDNKEGHGEIMVKGANLMKGYLYQGELTPAFEQ-QGWFNTGDIGELDGEGFLY 337

Query: 201 LVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQW 260
           ++GRR+  I SGGEN+YPEE+E VL QHPGI   VVV   +A   ++ VA +        
Sbjct: 338 VLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDI-- 395

Query: 261 SESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 319
                           S   L  +  EK L  +K P  F    +  P  ++GKI R+++
Sbjct: 396 ----------------SQAKLIAYLTEK-LAKYKVPIAFEKLDE-LPYNASGKILRNQL 436

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  133 bits (338), Expect = 2e-36
 Identities = 93/322 (28%), Positives = 132/322 (40%), Gaps = 50/322 (15%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAI-MADLATLIRVKKTWKGRDSV 59
           +A L+ G   V  PKF +    + + ++ VT    VP I    L T        K    +
Sbjct: 63  LATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPG--KPPPRL 120

Query: 60  KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           + I +    LP  ++      F    ++ AYGMTE +                    Q  
Sbjct: 121 RFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEAA-------------------HQIA 160

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLRYWDQFLA 174
            N  P  V +P  V  G+PA  VE+ +  D          G I+ RG +V   Y +   A
Sbjct: 161 SNPLPPLVRKPGSV--GRPAG-VEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEA 217

Query: 175 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 234
               +  + W  TGD+G +D+ G ++L GR    I  GGE + P EVE VLL+HP +   
Sbjct: 218 N-REAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEA 276

Query: 235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 294
           VV G+ +    E V A V LR      +S               E LR   R K L  FK
Sbjct: 277 VVFGVPDELYGEEVAAAVVLRA-----DSKVTI-----------EELRDFAR-KRLAAFK 319

Query: 295 APRLFVLWRKPFPLTSTGKIRR 316
            P+   L+    P  +TGKI+R
Sbjct: 320 VPKKI-LFVDALPKGATGKIQR 340

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  135 bits (343), Expect = 2e-36
 Identities = 83/326 (25%), Positives = 133/326 (40%), Gaps = 54/326 (16%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
              L  GA   F+P+F+ +          +T  + VP I   L  L   +       + +
Sbjct: 149 HCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRL--LEHYEFDDAAAAAAR 206

Query: 61  KI---LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
            +   ++G   LP  +++          L+  YGMTET      M L +P          
Sbjct: 207 NLRLFVSGSAALPVPVLERWEERTGHT-LLERYGMTETG-----MALSNPLD-------- 252

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS------HVGRILTRGAHVMLRYWDQ 171
             G   P +        VG P P VE+++  +          VG I  RG +V   YW++
Sbjct: 253 --GERRPGT--------VGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNK 302

Query: 172 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-RNGRIKSGGENVYPEEVEAVLLQHPG 230
             A     T + W  TGD+G +D+ G   ++GR  +  IKSGG  V   E+E  LL+HPG
Sbjct: 303 PEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPG 362

Query: 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290
           +  + V+G+ +    E VVA V        + +                 LR   REK L
Sbjct: 363 VAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAE----------------LRAWAREK-L 405

Query: 291 TGFKAPRLFVLWRKPFPLTSTGKIRR 316
             +K P+  ++  +  P  + GK+++
Sbjct: 406 APYKIPKRVIVVDE-LPRNAMGKVQK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  137 bits (346), Expect = 4e-36
 Identities = 100/337 (29%), Positives = 143/337 (42%), Gaps = 61/337 (18%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           + +G   V +P  +    L+A+++H  T L  VP +   +A     ++       V+   
Sbjct: 285 VSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEA--AEERGVDLSGVRNAF 342

Query: 64  NGGGGLP---SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +G   LP    EL ++ T       L+  YG+TETS                   P   G
Sbjct: 343 SGAMALPVSTVELWEKLTGGL----LVEGYGLTETS-------------------PIIVG 379

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCS---------DGSSHVGRILTRGAHVMLRYWDQ 171
           N  P S  +  G  VG P P  E+++           DG    G +L RG  V   YW++
Sbjct: 380 N--PMSDDRRPGY-VGVPFPDTEVRIVDPEDPDETMPDGEE--GELLVRGPQVFKGYWNR 434

Query: 172 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
                       W  TGD+  +++ G + +V R    I +GG NVYP EVE VL +HPG+
Sbjct: 435 PEETAKSFLDG-WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGV 493

Query: 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
               VVG+     +E VVA V L       E             L  E LR +CRE +LT
Sbjct: 494 EDAAVVGLPREDGSEEVVAAVVL-------EPGAA---------LDPEGLRAYCRE-HLT 536

Query: 292 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 328
            +K PR F    +  P    GK+RR EVR E++  L 
Sbjct: 537 RYKVPRRFYHVDE-LPRDQLGKVRRREVREELLEKLG 572

Length = 573

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  135 bits (342), Expect = 5e-36
 Identities = 92/319 (28%), Positives = 147/319 (46%), Gaps = 54/319 (16%)

Query: 11  VFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGL 69
           + +P KFE   AL  +E+H VT ++ VP I   L    + + T     SV+   NGG   
Sbjct: 219 IIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETT--NLQSVRWFYNGGAPC 276

Query: 70  PSELMKE-ATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVH 128
           P ELM+E     F   +    +GMTETS ++ FM   +      G               
Sbjct: 277 PEELMREFIDRGFLFGQ---GFGMTETSPTV-FMLSEEDARRKVGS-------------- 318

Query: 129 QPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFLA-KPSVSTGE 182
                 +GKP    + ++  +         VG +L RG +VM  YW++  A + ++  G 
Sbjct: 319 ------IGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDG- 371

Query: 183 VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA 242
            WL TGD+  +D+ G V++VGR+   I SGGEN+YP EVE V+ +   +  + VVG  + 
Sbjct: 372 -WLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHV 430

Query: 243 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLW 302
           +  E+ +A +  + S                 +L  + + +HCR   L  +K P+  V  
Sbjct: 431 KWGEIPIAFIVKKSS----------------SVLIEKDVIEHCRLF-LAKYKIPKEIVFL 473

Query: 303 RKPFPLTSTGKIRRDEVRR 321
            K  P  +TGKI++ ++  
Sbjct: 474 -KELPKNATGKIQKAQLVN 491

Length = 496

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  133 bits (337), Expect = 1e-35
 Identities = 81/329 (24%), Positives = 137/329 (41%), Gaps = 69/329 (20%)

Query: 6   VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKKIL 63
            GA  V + +++ ++A  A+E++ VT    +  ++ DL    R        D  S+K + 
Sbjct: 150 TGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFAD----YDLSSLKVVG 205

Query: 64  NGGGGLP---SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            GG  LP   +E +K  T           YG+TET +   F          P        
Sbjct: 206 GGGAALPPAVAERLKALTG----LLYEEGYGLTETHTCTHF---------NPPD------ 246

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQFLA 174
                   +P+  C+G P    + +V              G I+ RG  V   YW+    
Sbjct: 247 --------RPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWN---- 294

Query: 175 KPSVS-------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
           +P  +        G+ +  TGD+G ID+ G  + + R    I   G  V+P EVEA+L Q
Sbjct: 295 RPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQ 354

Query: 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 287
           HP ++ + V+G  + R  E+V A V L+  ++                ++ E + + CRE
Sbjct: 355 HPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGK--------------VTEEDIIEWCRE 400

Query: 288 KNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
             +  +K PR+ + +    P T++GK+  
Sbjct: 401 -RMAAYKYPRI-IEFVDELPKTASGKVLW 427

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  133 bits (337), Expect = 2e-35
 Identities = 88/327 (26%), Positives = 126/327 (38%), Gaps = 54/327 (16%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +  L+ G   V         A   +E+  VT    VPA    L  L      W   D  S
Sbjct: 201 LGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPA----LLNLWLEAAEWDQADLSS 256

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++ I  GG  L  EL +          L   +GM E    + +  L DP           
Sbjct: 257 LRVIQVGGAPLSPELARRVEERLGC-PLQQVFGMAE--GLVNYTRLDDP----------- 302

Query: 119 FGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDGSS-----HVGRILTRGAHVMLRYWDQF 172
                P+ + + QG    +P  P  E+++  D         VG +LTRG + +  Y+   
Sbjct: 303 -----PDVIMRTQG----RPISPADEIRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAP 353

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
                  T + +  TGD+  ID  G   +VGR   +I  GGE + PEE+E +LL HP + 
Sbjct: 354 EHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVA 413

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              VVG+ +  L E + A V  R                     +   LR   RE+ L  
Sbjct: 414 DAAVVGMPDEVLGERICAFVVPRGGAA----------------PTLAELRAFLREQGLAK 457

Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDE 318
           FK P RL V+     PLT  GK+ +  
Sbjct: 458 FKLPDRLEVV--DSLPLTPVGKVDKKA 482

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  130 bits (330), Expect = 1e-34
 Identities = 85/332 (25%), Positives = 131/332 (39%), Gaps = 64/332 (19%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
            A L+VGA  V +P+F +    + V +H  T    + A+ A L      K+     D   
Sbjct: 142 YAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILM-----KQPPSPDDRDH 196

Query: 61  KI-LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
            +    G  LP+ +       F   KL+  YGMTET   +  +   DP    PG      
Sbjct: 197 PLRFVFGAPLPAAIWPAFEERF-GVKLVEGYGMTETG--VPIIAPGDPA--PPG------ 245

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAH---VMLRYWDQ 171
                           G+P P VE+++  +    V     G ++ R      +   Y+  
Sbjct: 246 --------------SCGRPRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYG- 290

Query: 172 FLAKPSVSTGEV---WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 228
               P  +       W  TGD G  D+ G ++ V R+   I+  GEN+   EVEA +L H
Sbjct: 291 ---MPEATAKAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAH 347

Query: 229 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 288
           P +    VV + +    + V A V LR           ++       L  E L + CR+ 
Sbjct: 348 PAVAEAAVVAVPSELGEDEVKAVVVLRP---------GET-------LDPEALLEFCRD- 390

Query: 289 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 320
            L  F  PR ++ +    P T T KI++ E+R
Sbjct: 391 RLPYFMVPR-YIEFVDELPKTPTEKIQKAELR 421

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  129 bits (328), Expect = 3e-34
 Identities = 96/352 (27%), Positives = 139/352 (39%), Gaps = 77/352 (21%)

Query: 1   MAMLMVGACHVFIPKFES-KSALEAVEQHCVTSLITVP--------AIMADLATLIRVKK 51
              L  GA   F    E+    L  V     T    VP         I A +A    +K+
Sbjct: 149 YLPLSSGARVNFAESPETLLEDLREVR---PTVFFAVPRVWEKIYAGIEAKVAAAGPLKR 205

Query: 52  ----TWKGRDSVKKILNGGGGLPSELMKEATNSFPKA---KLISAYGMTETSSSLTFMTL 104
                  G   ++  ++GG  LP E+++     F +A    ++  YG+TETS   T    
Sbjct: 206 KLFRWALGGGRLRFAVSGGAPLPPEVLE-----FFRALGIPILEGYGLTETSGVATVNRP 260

Query: 105 YDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHV 164
            D  + T                       VGKP P VE+++  DG      IL RG +V
Sbjct: 261 GDIRIGT-----------------------VGKPLPGVEVRIAEDGE-----ILVRGPNV 292

Query: 165 MLRYWDQFLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYP 218
           M  Y+     K   +T E      WL TGDIG +D+ G + +  R+   I  +GG+N+ P
Sbjct: 293 MKGYY-----KNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAP 347

Query: 219 EEVEAVLLQHPGIIGIVVVGIANARLTEMVVACV-RLRESWQWSESNCDQSSKNKELLLS 277
           + +E  L   P I   VVVG     LT ++V     L +   W+E +    +   +L   
Sbjct: 348 QPIENALKASPYISQAVVVGDDRPYLTALIVLDPEALEK---WAEQHGLPFTTYADLAED 404

Query: 278 SEVLRQHCRE-----KNLTGFKAPRLFVLWRKPF-----PLTSTGKIRRDEV 319
            EV     +E       L   +  + FVL  K F      LT T K+RR  V
Sbjct: 405 PEVRALIRKEVEEANARLARVEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  130 bits (329), Expect = 4e-34
 Identities = 82/271 (30%), Positives = 120/271 (44%), Gaps = 33/271 (12%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +A+L +GA  V +P+F+ +  L A+E++ VT L  VP I+  L     V K     D  S
Sbjct: 221 LALLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDK----YDLSS 276

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           +K+I +G   L  EL +     FP  +L   YGMTE+S   T                  
Sbjct: 277 LKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMC---------------- 320

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQF 172
                P     P+   VG+  P+VE K+       S   +  G +  RG  VM  Y +  
Sbjct: 321 -----PVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNP 375

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A       + WL TGD+G  D+ G +++V R    IK  G  V P E+EA+LL HP I 
Sbjct: 376 EATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIA 435

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSES 263
              V+   +    E+ +A V  +   + SE 
Sbjct: 436 DAAVIPYPDEEAGEIPMAFVVRQPGSELSED 466

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score =  126 bits (318), Expect = 1e-32
 Identities = 85/325 (26%), Positives = 147/325 (45%), Gaps = 62/325 (19%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           L VG     + KF     L+ +E   ++ + TVP +   L +L +  +     ++  KI+
Sbjct: 206 LYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTM---LESLYKENRV---IENKMKII 259

Query: 64  NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMT-LYDPTLETPGQLPQAFGNV 122
           + G    +E  ++  N FP AKL   YG +E    L+F+T L D   E            
Sbjct: 260 SSGAKWEAEAKEKIKNIFPYAKLYEFYGASE----LSFVTALVDEESERR---------- 305

Query: 123 TPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPS 177
            PNSV        G+P  +V++++C++    V     G +  +     + Y    +    
Sbjct: 306 -PNSV--------GRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARE 356

Query: 178 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 237
           ++    W+   D+G  D+ G +++VGR    I  GG N++PEE+E+VL +HP +  IVV+
Sbjct: 357 LNADG-WMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVI 415

Query: 238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR 297
           G+ ++   E  VA +               S+  ++       L+  C ++ L+ FK P+
Sbjct: 416 GVPDSYWGEKPVAII-------------KGSATKQQ-------LKSFCLQR-LSSFKIPK 454

Query: 298 --LFVLWRKPFPLTSTGKIRRDEVR 320
              FV      P T++GKI R E +
Sbjct: 455 EWHFV---DEIPYTNSGKIARMEAK 476

Length = 487

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  120 bits (302), Expect = 1e-30
 Identities = 89/331 (26%), Positives = 144/331 (43%), Gaps = 55/331 (16%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A+L VG       +F+ ++ L A+E+H +T     P +++ + T+    +     DS+ 
Sbjct: 210 IAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRF--DLDSLA 267

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
             + GG   P   +++ T  F +A+ I AYG+TET S  T M          G+  +  G
Sbjct: 268 WCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLME--------AGREIEKIG 319

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAK 175
           +              G+   HVE+++       +     G I  RG  V   YW     K
Sbjct: 320 ST-------------GRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYW-----K 361

Query: 176 PSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
               T E     W  +GD+G +D+ G ++L  R+   I SGGEN+   EVE V+ + P +
Sbjct: 362 DPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEV 421

Query: 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
               V+G+ + R  E + A V L                     L+ E L +HCR++ L 
Sbjct: 422 AEAAVIGVHDDRWGERITAVVVLNPGAT----------------LTLEALDRHCRQR-LA 464

Query: 292 GFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
            FK PR   + R   P   +GK+ +  +R E
Sbjct: 465 SFKVPRQLKV-RDELPRNPSGKVLKRVLRDE 494

Length = 497

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  120 bits (303), Expect = 2e-30
 Identities = 89/322 (27%), Positives = 136/322 (42%), Gaps = 43/322 (13%)

Query: 1   MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
            A  MVGA  V      +  S L+ +E+  VT    VP I   L     ++   K   S+
Sbjct: 224 YAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLN--YLEANGKDLSSL 281

Query: 60  KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           ++++ GG  LP  L+++        ++I A+GMTETS   T   L  P L     LP+  
Sbjct: 282 RRVVVGGSALPRSLIEKLEERG--VEVIHAWGMTETSPLGTVSRL-KPHLV---DLPEE- 334

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-------HVGRILTRGAHVMLRYWDQF 172
                  +   QG    +P P VEL++  D  +        VG ++ RG  V   Y+   
Sbjct: 335 ---EKLELRAKQG----RPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKD- 386

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
             K    T + W  TGD+  ID+ G + +  R    IKSGGE +   E+E  L+ HP + 
Sbjct: 387 PEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVA 446

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              VVG+ + +  E  +A V L+   +                ++ E L +H  +K +  
Sbjct: 447 EAAVVGVPHEKWGERPLAVVVLKPGAK----------------VTEEELLEHLAKK-VAK 489

Query: 293 FKAPRLFVLWRKPFPLTSTGKI 314
           +  P   V      P TS GK 
Sbjct: 490 WWLPDRVVF-VDEIPKTSVGKF 510

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  118 bits (298), Expect = 9e-30
 Identities = 83/280 (29%), Positives = 124/280 (44%), Gaps = 64/280 (22%)

Query: 63  LNGGGGLP-----SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
           L+ GGG+      +E   + T       L+  YG+TE S  ++                 
Sbjct: 329 LSVGGGMAVQQAVAERWVKLT----GQYLLEGYGLTECSPLVS----------------- 367

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQF 172
               V P  +    G  +G P P  E+K+  D  + V     G +  +G  VML YW + 
Sbjct: 368 ----VNPYDLDYYSG-SIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQR- 421

Query: 173 LAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 228
              P  +T EV    WL TGDI  +D+ G + +V R+   I   G NVYP E+E V++ H
Sbjct: 422 ---PE-ATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLH 477

Query: 229 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 288
           P ++ +  VG+ +    E V   V  +          D S       L+ E L  HCR  
Sbjct: 478 PKVLEVAAVGVPSEVSGEAVKIFVVKK----------DPS-------LTEEELITHCRR- 519

Query: 289 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 328
           +LTG+K P+L V +R   P ++ GKI R E+R E  + + 
Sbjct: 520 HLTGYKVPKL-VEFRDELPKSNVGKILRRELRDEARAKVD 558

Length = 560

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  114 bits (288), Expect = 1e-28
 Identities = 87/337 (25%), Positives = 132/337 (39%), Gaps = 67/337 (19%)

Query: 6   VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVKKIL 63
           VGA  V       +  L+A+E+H +T L  VP + A LA L      W      S++ + 
Sbjct: 228 VGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQL-----DWPESAAPSLRYLT 282

Query: 64  NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 123
           N GG +P   +    +  P A+L   YG+TE      F + Y         LP    +  
Sbjct: 283 NSGGAMPRATLSRLRSFLPNARLFLMYGLTEA-----FRSTY---------LPPEEVDRR 328

Query: 124 PNSVHQPQGVCVGKPAPHVELKVCSDGSSH-----VGRILTRGAHVMLRYWDQ------- 171
           P+S+        GK  P+ E+ V  +  S       G ++ RGA V + YW+        
Sbjct: 329 PDSI--------GKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAER 380

Query: 172 ------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 225
                 F  +  +    VW  +GD    D+ G ++ VGRR+  IK+ G  V P EVE V 
Sbjct: 381 FRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVA 438

Query: 226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 285
                +   V  G+ +  L + +V  V      +                L    L   C
Sbjct: 439 YATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEE----------------LDRAALLAEC 482

Query: 286 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
           R   L  +  P L +  R+  P  + GKI R  + +E
Sbjct: 483 R-ARLPNYMVPAL-IHVRQALPRNANGKIDRKALAKE 517

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  113 bits (284), Expect = 8e-28
 Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 44/238 (18%)

Query: 88  SAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC 147
           +A+GMTET +  TF         T G     F     + + QP  V VG P P  E K+C
Sbjct: 358 AAWGMTETHTCDTF---------TAGFQDDDF-----DLLSQP--VFVGLPVPGTEFKIC 401

Query: 148 SDGSSHV------GRILTRGAHVMLRYWDQFLA-KPSVSTGEVWLDTGDIGSIDDGGNVW 200
              +  +      G I+ R   ++  YW++  A   ++  G  WL TGDIG ID+ G + 
Sbjct: 402 DFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDG--WLHTGDIGKIDEQGFLH 459

Query: 201 LVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQW 260
            +GRR   +K  G +V+P EVEA+L QHP ++G  VVG  +    ++ VA V+L+     
Sbjct: 460 YLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKP---- 515

Query: 261 SESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDE 318
                          L++  L+  CRE N+  +K P + ++     P+T+TGK+R+ +
Sbjct: 516 ------------GADLTAAALQAWCRE-NMAVYKVPEIRIV--DALPMTATGKVRKQD 558

Length = 567

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  111 bits (280), Expect = 2e-27
 Identities = 78/267 (29%), Positives = 124/267 (46%), Gaps = 42/267 (15%)

Query: 3   MLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVP----AIMADLATLIRVKKTWKGR 56
            L++GA  V  P   F+    L+ +E   VT +  VP    A+ A+        +  + R
Sbjct: 237 GLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAE--------QQARPR 288

Query: 57  DSVKKILNGGGGLPSE-LMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 115
           D   ++L+ G    S+ L+++   +FP+A++++A+G TE S  +T M L +  +   G  
Sbjct: 289 DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSP-VTCMLLGEDAIRKLGS- 346

Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLRYWD 170
                              VGK  P V  +V  +  +      VG I+ R   +M  YW+
Sbjct: 347 -------------------VGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWN 387

Query: 171 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230
              A      G  W  +GD+   D+ G VW+V R+   I SGGEN+Y  EVE VL  HP 
Sbjct: 388 NPEATAEAFAGG-WFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPD 446

Query: 231 IIGIVVVGIANARLTEMVVACVRLRES 257
           I+ + V+G A+ +  E+ VA   +R  
Sbjct: 447 IVEVAVIGRADEKWGEVPVAVAAVRND 473

Length = 542

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  111 bits (280), Expect = 3e-27
 Identities = 84/268 (31%), Positives = 110/268 (41%), Gaps = 46/268 (17%)

Query: 58  SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
           S  K+ N GG    +   E         ++  YG+TETS                   P 
Sbjct: 333 SALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETS-------------------PV 373

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQF 172
           A  N  P       G  VG P P   LKV  D  + +     G +  +G  VM  YW Q 
Sbjct: 374 ASTN--PYGELARLGT-VGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQP 430

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A       E W  TGDI  ID  G V +V R+   I   G NVYP E+E V++ HP + 
Sbjct: 431 EATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVA 490

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
               +G+ + R  E V   V  R+                   LS E L+ +C+E N TG
Sbjct: 491 NCAAIGVPDERSGEAVKLFVVARDPG-----------------LSVEELKAYCKE-NFTG 532

Query: 293 FKAPRLFVLWRKPFPLTSTGKIRRDEVR 320
           +K P+  VL R   P+T  GKI R E+R
Sbjct: 533 YKVPKHIVL-RDSLPMTPVGKILRRELR 559

Length = 562

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  111 bits (279), Expect = 3e-27
 Identities = 88/316 (27%), Positives = 145/316 (45%), Gaps = 44/316 (13%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           +M G   V IPKF+ K   EA+++H VT     P I   L     +K+      S++  +
Sbjct: 272 IMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEY--DISSIRACI 329

Query: 64  NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 123
           +G   LP E+ +E   +    KL+  YG+TE+S       L++       ++P + G   
Sbjct: 330 SGSAPLPVEV-QEKFETVTGGKLVEGYGLTESSPVTHSNFLWEK------RVPGSIGVPW 382

Query: 124 PNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG-- 181
           P++      +  G+  P  E          +G I+ +G  +M  YW+    KP  +    
Sbjct: 383 PDTEAMIMSLETGEALPPGE----------IGEIVVKGPQIMKGYWN----KPEETAAVL 428

Query: 182 -EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
            + WL TGD+G +D+ G  ++  R+   I + G NVYP EVE VL +H  +  +V +G+ 
Sbjct: 429 QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVP 488

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
           +    E V A V L+E  + SE   +Q ++                 K L  +K P+++ 
Sbjct: 489 DPYRGETVKAFVVLKEGTECSEEELNQFAR-----------------KYLAAYKVPKVYE 531

Query: 301 LWRKPFPLTSTGKIRR 316
            +R   P T+ GKI R
Sbjct: 532 -FRDELPKTTVGKILR 546

Length = 563

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  110 bits (277), Expect = 5e-27
 Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 23/190 (12%)

Query: 136 GKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDI 190
           G P P V+ +V  D  +       G +L RG ++   YW +  A     TG+ W  TGDI
Sbjct: 309 GIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDI 368

Query: 191 GSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVA 250
              D  G  W+V R+     SGGENVYP E+EAVL  HPGI    VVG+A+A+  E+   
Sbjct: 369 ARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYL 428

Query: 251 CVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS 310
            +   +                   L  E +R H   + L  +K P+   L     P T+
Sbjct: 429 AIVPAD----------------GAPLDLERIRSHLSTR-LAKYKVPKHLRL-VDALPRTA 470

Query: 311 TGKIRRDEVR 320
           +GK+++  +R
Sbjct: 471 SGKLQKARLR 480

Length = 488

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score =  110 bits (278), Expect = 5e-27
 Identities = 78/329 (23%), Positives = 119/329 (36%), Gaps = 59/329 (17%)

Query: 1   MAMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMAD-LATLIRVKKTWKGRD 57
            A L  G   V +P  +F++      +E+  V  +  V   MA  L   +  +  +    
Sbjct: 238 FAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDL-S 296

Query: 58  SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
           S+  I +GG      + +      P   L  + G +ET    +            G +  
Sbjct: 297 SLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTV-------AKGAVHT 349

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 177
                T           V       +      GS  +G I  R  H+ L Y+     + +
Sbjct: 350 GGPRFTIGP-----RTVVLDE----DGNPVEPGSGEIGWI-ARRGHIPLGYYKD--PEKT 397

Query: 178 VST-----GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
             T     G  +   GD   ++  G + L+GR +  I +GGE V+PEEVE  L  HP + 
Sbjct: 398 AETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVA 457

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
             +VVG+ + R  + VVA V+LRE  +                     LR HCR   L G
Sbjct: 458 DALVVGVPDERWGQEVVAVVQLREGARPDL----------------AELRAHCRSS-LAG 500

Query: 293 FKAPRLFVLWRKPFPLTSTGKIRRDEVRR 321
           +K PR                   DEV+R
Sbjct: 501 YKVPRAIWF--------------VDEVQR 515

Length = 533

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score =  110 bits (276), Expect = 5e-27
 Identities = 85/302 (28%), Positives = 131/302 (43%), Gaps = 39/302 (12%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A L +   +V + +F+   AL+ +EQ  VTSL   P  +  LA     +      DS++
Sbjct: 215 VAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAA--AAEGAPLKLDSLE 272

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            +   G  +P  +++      P  K ++ YG TE  +SL +M   DP   T    P  F 
Sbjct: 273 HVTFAGATMPDAVLERVNQHLPGEK-VNIYGTTEAMNSL-YMR--DPRTGT-EMRPGFFS 327

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLA-KPSVS 179
            V        + V +G  +P   L    +G      ++         Y +Q  A    + 
Sbjct: 328 EV--------RIVRIGG-SPDEALPNGEEGEL----VVAAADATFTGYLNQPQATAEKLQ 374

Query: 180 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 239
            G  W  T D+  +D  G V ++GR +  I SGGEN++P EVE VL + PG+  +VV+G+
Sbjct: 375 DG--WYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGL 432

Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 299
            + R  + V ACV  RE                   LS++ L   CR   L  FK PR +
Sbjct: 433 PDERWGQSVTACVVPREGET----------------LSADALDTFCRASELADFKRPRRY 476

Query: 300 VL 301
             
Sbjct: 477 FF 478

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  110 bits (276), Expect = 7e-27
 Identities = 89/342 (26%), Positives = 134/342 (39%), Gaps = 71/342 (20%)

Query: 2   AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 61
           A+  VG  HV + K ++ +  + +E+H VT L   P ++  LA            ++ K 
Sbjct: 228 AITAVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLAN---------APEADKL 278

Query: 62  ILNG------GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 115
            L         G  P   + +        ++   YG+TET   +T    + P  +    L
Sbjct: 279 PLPRPVRVMTAGAPPPPAVIKKMEEL-GFEVTHVYGLTETYGPITV-CEWKPEWDA---L 333

Query: 116 P----------QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVM 165
           P          Q    V          V V  P       V  DG + +G I+ RG  VM
Sbjct: 334 PAEERARLKARQGVRYVGLE------EVDVVDP--ETMKDVPRDGKT-IGEIVMRGNTVM 384

Query: 166 LRYWDQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEV 221
             Y+     K   +T E     W  +GD+  +   G + +  R    I SGGEN+   EV
Sbjct: 385 KGYY-----KNPEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEV 439

Query: 222 EAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 281
           E VL +HP ++   VV   + +  E   A V L+     +E                E L
Sbjct: 440 EGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTE----------------EEL 483

Query: 282 RQHCREKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVRR 321
            ++CREK L  FK P+   FV      P T+TGKI++  +R 
Sbjct: 484 IEYCREK-LAHFKVPKTVEFV----ELPKTATGKIQKFVLRE 520

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  109 bits (275), Expect = 1e-26
 Identities = 94/345 (27%), Positives = 141/345 (40%), Gaps = 83/345 (24%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIM------ADLATLIRVKKTWK 54
              L VGA +V +   + +  L  +E   +TS    P +        D  T         
Sbjct: 232 GPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDT--------- 282

Query: 55  GRD--SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 112
            RD  S++K   G   +P E++KE     P  +  + YG TE +                
Sbjct: 283 -RDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIA---------------- 325

Query: 113 GQLPQAFGNVTPNSVHQPQ------GVCVGKPAPHVELKVCSDGSSHV-----GRILTRG 161
              P A       +V  P+      G   G+P  +VE +V  D  + V     G I+ R 
Sbjct: 326 ---PLA-------TVLGPEEHLRRPGSA-GRPVLNVETRVVDDDGNDVAPGEVGEIVHRS 374

Query: 162 AHVMLRYWDQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 217
             +ML YWD     P   T E     W  +GD+G +D+ G + +V R+   IK+GGENV 
Sbjct: 375 PQLMLGYWD----DPE-KTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVA 429

Query: 218 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 277
             EVE  L  HP +  + V+G+ + +  E V A V  +     +E          EL+  
Sbjct: 430 SREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTE---------DELI-- 478

Query: 278 SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
                 HCR + L GFK P+  V++    P   +GKI + E+R  
Sbjct: 479 -----AHCRAR-LAGFKVPK-RVIFVDELPRNPSGKILKRELRER 516

Length = 523

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score =  108 bits (273), Expect = 1e-26
 Identities = 64/261 (24%), Positives = 111/261 (42%), Gaps = 51/261 (19%)

Query: 60  KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           + IL GG      L+++A     + +L   YGMTET+S +        TL      P  F
Sbjct: 233 RTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIA-------TL-----KPDDF 278

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVS 179
                           G+  PH ++ + +   +  G I  +   + L Y+ Q L    + 
Sbjct: 279 LAG---------NNSSGQVLPHAQITIPA---NQTGNITIQAQSLALGYYPQILDSQGI- 325

Query: 180 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 239
                 +T D+G +D  G + ++GR + +I +GGENVYP EVEA +L    +  + V+G+
Sbjct: 326 -----FETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGL 380

Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 299
            +    E+V A                   K+  + L    L+   +++ L+ FK P+ +
Sbjct: 381 PDPHWGEVVTAIY---------------VPKDPSISLEE--LKTAIKDQ-LSPFKQPKHW 422

Query: 300 VLWRKPFPLTSTGKIRRDEVR 320
            +     P    GKI R +++
Sbjct: 423 -IPVPQLPRNPQGKINRQQLQ 442

Length = 452

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  108 bits (271), Expect = 2e-26
 Identities = 85/318 (26%), Positives = 134/318 (42%), Gaps = 54/318 (16%)

Query: 14  PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-SVKKILNGGGGLPSE 72
            +F+ + A   + ++ VT+    P     L  + RV       D  ++ + +GG  L  E
Sbjct: 166 QRFDPERAFALMRRYGVTNAFLPPTA---LKMMRRVGSERARYDLRLRAVASGGESLGEE 222

Query: 73  LMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQG 132
           L++ A +      +   YG TE +  +                          ++   + 
Sbjct: 223 LLEWARDEL-GLTVNEFYGQTEANLVVG----------------------NCAALGPARP 259

Query: 133 VCVGKPAPHVELKVCSDGSSHV-----GRILTRGAH--VMLRYWDQFLAKPSVSTGEVWL 185
             +GKP P  E+ V  D    V     G I  +     + L YW+   A  +   G+ WL
Sbjct: 260 GSMGKPVPGHEVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-WL 318

Query: 186 DTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLT 245
            TGD+G  D  G +W  GR +  IKS G  + P E+E  LL+HP ++   VVG+ +    
Sbjct: 319 LTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERG 378

Query: 246 EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRL--FVLWR 303
           E+V A V L E  + S+          EL   +  L++  +   L   + PR   FV   
Sbjct: 379 EIVKAFVVLAEGVEPSD----------EL---ATELQELVKS-RLAAHEYPREIEFV--- 421

Query: 304 KPFPLTSTGKIRRDEVRR 321
              P+T+TGKIRR E+RR
Sbjct: 422 DELPMTTTGKIRRRELRR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  109 bits (274), Expect = 2e-26
 Identities = 84/319 (26%), Positives = 134/319 (42%), Gaps = 64/319 (20%)

Query: 19  KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT 78
           K A + + +  +        ++AD     +++    GR  ++  L+GG  L  EL+    
Sbjct: 317 KVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGR--IRYALSGGAPLSPELLH--- 371

Query: 79  NSFPKA---KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCV 135
             F ++    ++  YG+TETS+ ++                         +V        
Sbjct: 372 --FFRSLGIPILEGYGLTETSAVVSV---------------NPPDRFVLGTV-------- 406

Query: 136 GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV-----WLDTGDI 190
           GKP P +E+K+  DG      IL RG +VM  Y+      P   T E      W  TGD+
Sbjct: 407 GKPLPGIEVKIADDG-----EILVRGPNVMKGYYK----NPEA-TAEAFTEDGWFRTGDL 456

Query: 191 GSIDDGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVV 249
           G +D+ G + + GR+   IK S G+N+ PE +E+ L + P I  I VVG     L  ++V
Sbjct: 457 GELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIV 516

Query: 250 ACV-RLRESWQWSES-NCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRL-----FVLW 302
                L +   W+ES N   S+  +EL    ++L+      N    +         FVL 
Sbjct: 517 PDFDALEK---WAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLL 573

Query: 303 RKPFP-----LTSTGKIRR 316
            K F      LT T K++R
Sbjct: 574 PKEFTPENGELTPTLKLKR 592

Length = 613

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  106 bits (267), Expect = 3e-26
 Identities = 81/310 (26%), Positives = 122/310 (39%), Gaps = 48/310 (15%)

Query: 1   MAMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD- 57
           ++ L  G   V +P  KF+       VE+H V +L+ V    A    L+   +     D 
Sbjct: 77  LSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFA--RPLLEALEAAGRYDL 134

Query: 58  -SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 116
            S++ I + G     E+ +      P   L+ A G +ET    + ++       T     
Sbjct: 135 SSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGASAT----- 189

Query: 117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP 176
              G         P  V +       +      GS  VG I   G  V L Y+     + 
Sbjct: 190 ---GKFELG----PDTVVL-----DEDGSEVPPGSGEVGWIARGG-RVPLGYYKD--PEK 234

Query: 177 SVST-----GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
           +  T     G  +   GD   ++  G + L+GR +  I +GGE V+PEEVE  L  HP +
Sbjct: 235 TAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDV 294

Query: 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
              +VVG+ + R  + VVA V+LR                    L    LR HCR+  L 
Sbjct: 295 ADALVVGVPDERWGQRVVAVVQLRAGAG----------------LDLAELRDHCRQH-LA 337

Query: 292 GFKAPRLFVL 301
           G+K PR  V+
Sbjct: 338 GYKLPRAIVV 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  106 bits (267), Expect = 9e-26
 Identities = 80/330 (24%), Positives = 130/330 (39%), Gaps = 62/330 (18%)

Query: 4   LMVGACHVFIPKFESKSAL---EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           L  GA    IPK +    L   E +++H +T  ++VP+  + L       +        S
Sbjct: 160 LASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFASLLLLS----RELNPESLPS 215

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++  L  G  LP +L K     FP A++I+ YG TE + ++T   +    L     LP  
Sbjct: 216 LRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLP-- 273

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWD--- 170
                           +G P P +   +  +          G ++  G  V   Y +   
Sbjct: 274 ----------------IGYPKPGLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPE 317

Query: 171 ----QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226
                F        G+ W  TGD+  ++D G +  +GR++ +IK  G  +  EE+EA L 
Sbjct: 318 KTAKAFFQDE----GQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALR 373

Query: 227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCR 286
             PG+   VV+ +        +VA V                   KE  L ++ L++  +
Sbjct: 374 ALPGVEEAVVLPVPKGEKVVRLVAFVVG-----------------KEGALDTKALKKELK 416

Query: 287 EKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
            K L  +  PR FV +    PL + GKI R
Sbjct: 417 -KRLPPYMIPRRFV-YLDSLPLNANGKIDR 444

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  105 bits (265), Expect = 3e-25
 Identities = 90/339 (26%), Positives = 140/339 (41%), Gaps = 78/339 (23%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVP----AIM--ADLATLIRVKKTWKGRD 57
           L+ G   + + KF+    L A+E+  +T+   VP    A++   DL T          RD
Sbjct: 230 LLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRT----------RD 279

Query: 58  --SVKKILNGGGGL-PSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 114
             S++ +  G   + P  L  EA   F        YG TE    +T++   D   + P +
Sbjct: 280 LSSLETVYYGASPMSPVRL-AEAIERFGPI-FAQYYGQTEAPMVITYLRKRDHDPDDPKR 337

Query: 115 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYW 169
           L                  C G+P P + + +  +         VG I  RG  VM  YW
Sbjct: 338 L----------------TSC-GRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYW 380

Query: 170 DQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 225
           ++    P   T E     WL TGD+   D+ G  ++V R+   I +GG NV+P EVE VL
Sbjct: 381 NR----PEE-TAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVL 435

Query: 226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 285
            +HP +  + V+G+ + +  E V A V LR                    + +  L+ H 
Sbjct: 436 AEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA----------------VDAAELQAHV 479

Query: 286 REKNLTGFK----APRLFVLWRKPFPLTSTGKIRRDEVR 320
           +E+     K    AP+  V +    PLT+ GK  +  +R
Sbjct: 480 KER-----KGSVHAPKQ-VDFVDSLPLTALGKPDKKALR 512

Length = 524

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  104 bits (262), Expect = 6e-25
 Identities = 90/334 (26%), Positives = 139/334 (41%), Gaps = 48/334 (14%)

Query: 2   AMLMVGACHVFIPKFESKSALEAVEQH-CVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           A  ++GA  V +  F   + L  +EQ  C   L   P I  DL  L+  +       +++
Sbjct: 249 APFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIY-DLLNLLEKQPAD--LSALR 305

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
             L GG  +P ++ +E        KL+S YG TE SS    + L DP           F 
Sbjct: 306 FFLCGGTTIPKKVARECQQR--GIKLLSVYGSTE-SSPHAVVNLDDPL--------SRFM 354

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAK 175
           +              G  A  VE+KV  +    +     G   +RG +V + Y D+    
Sbjct: 355 HTD------------GYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELT 402

Query: 176 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235
                 E W  +GD+  +D+ G + + GR+   I  GGEN+   EVE +LLQHP I    
Sbjct: 403 ARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDAC 462

Query: 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKA 295
           VV + + RL E   A V L+                    L+ E +      K +  +K 
Sbjct: 463 VVAMPDERLGERSCAYVVLKAP---------------HHSLTLEEVVAFFSRKRVAKYKY 507

Query: 296 PRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 329
           P   V+  K  P T++GKI++  +R+++M  L  
Sbjct: 508 PEHIVVIDK-LPRTASGKIQKFLLRKDIMRRLTQ 540

Length = 547

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  104 bits (262), Expect = 6e-25
 Identities = 80/272 (29%), Positives = 124/272 (45%), Gaps = 55/272 (20%)

Query: 58  SVKKILNGGGGLP---SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 114
           S+K  L GG  +    +E  K+ T       L+ AYG+TETS +             P  
Sbjct: 330 SLKMTLGGGMAVQRSVAERWKQVTG----LTLVEAYGLTETSPAACI---------NPLT 376

Query: 115 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRILTRGAHVMLRYW 169
           L +  G++             G P P  +  +  D  +      +G +  +G  VM  YW
Sbjct: 377 LKEYNGSI-------------GLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYW 423

Query: 170 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
            +      V   + WL TGDI  +D+ G V++V R+   I   G NVYP E+E V+   P
Sbjct: 424 KRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMP 483

Query: 230 GIIGIVVVGIANARLTEMV-VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 288
           G++ +  VG+ + +  E+V V  V+                  K+  L++E ++ H R  
Sbjct: 484 GVLEVAAVGVPDEKSGEIVKVVIVK------------------KDPALTAEDVKAHAR-A 524

Query: 289 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 320
           NLTG+K PR+ + +RK  P T+ GKI R E+R
Sbjct: 525 NLTGYKQPRI-IEFRKELPKTNVGKILRRELR 555

Length = 560

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  104 bits (262), Expect = 6e-25
 Identities = 82/279 (29%), Positives = 114/279 (40%), Gaps = 53/279 (18%)

Query: 58  SVKKILNGGGGLPS---ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 114
           ++K  L+GG  L     E  KE T       +   YGMTETS          P       
Sbjct: 327 ALKLTLSGGMALQLATAERWKEVTG----CAICEGYGMTETS----------PV------ 366

Query: 115 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRILTRGAHVMLRYW 169
                  V+ N     Q   +G P P    KV  D         VG +  +G  VM  YW
Sbjct: 367 -------VSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYW 419

Query: 170 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
            +  A   +   + WL TGDI  I + G + +V R+   I   G NVYP E+E VL   P
Sbjct: 420 QRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALP 479

Query: 230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKN 289
           G++    +G+ + +  E +   V                 K  E  L+ E + +H R  N
Sbjct: 480 GVLQCAAIGVPDEKSGEAIKVFV---------------VVKPGE-TLTKEQVMEHMRA-N 522

Query: 290 LTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLK 328
           LTG+K P+  V +R   P T+ GKI R E+R E +    
Sbjct: 523 LTGYKVPKA-VEFRDELPTTNVGKILRRELRDEELKKAG 560

Length = 562

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  103 bits (260), Expect = 1e-24
 Identities = 88/330 (26%), Positives = 138/330 (41%), Gaps = 52/330 (15%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           M  +M+GA  V    ++   A E +    VT  +     + DL     VK++ +   S++
Sbjct: 258 MMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRA--VKESGRPVSSLR 315

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
             L  G  +P  L++ A  +   AK++SA+GMTE  +          TL       +   
Sbjct: 316 TFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAV---------TLTKLDDPDERAS 365

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSS----HVGRILTRGAHVMLRYWDQFLAK 175
                          G P P VE++V  +DG+      +GR+  RG      Y    L +
Sbjct: 366 TTD------------GCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGY----LKR 409

Query: 176 PSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233
           P ++    + W DTGD+  ID  G + + GR    I  GGEN+   E+EA+L +HP I  
Sbjct: 410 PQLNGTDADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQ 469

Query: 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 293
           + +V   + RL E   A V  R                 E L + +V +Q+  E      
Sbjct: 470 VAIVAYPDERLGERACAFVVPRPGQSLDFEEM------VEFLKAQKVAKQYIPE------ 517

Query: 294 KAPRLFVLWRKPFPLTSTGKIRRDEVRREV 323
              RL V  R   P T +GKI++  +R  +
Sbjct: 518 ---RLVV--RDALPRTPSGKIQKFRLREML 542

Length = 547

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  102 bits (258), Expect = 2e-24
 Identities = 81/330 (24%), Positives = 130/330 (39%), Gaps = 60/330 (18%)

Query: 4   LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           L+ GA  V  P    +      E + +H +T L  VP+++  L   +          S++
Sbjct: 156 LLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALE----PAALPSLR 211

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            ++ GG  LP+EL++     FP A+L++AYG TET+     +T ++   +          
Sbjct: 212 LVIVGGEALPAELVRRWRELFPGARLVNAYGPTETT---VDVTYHEVDPDDL-------- 260

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRILTRGAHVMLRYWDQ-- 171
                       V +G+P  +  + V          G    G +   GA V   Y ++  
Sbjct: 261 --------DGGSVPIGRPIANTRVYVLDEDLRPVPVGV--PGELYIGGAGVARGYLNRPE 310

Query: 172 -----FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226
                F+  P    GE    TGD+      GN+  +GR + ++K  G  +   E+EA LL
Sbjct: 311 LTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGEIEAALL 370

Query: 227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCR 286
            HPG+   VVV   +    + +VA V      +                L +  LR    
Sbjct: 371 AHPGVREAVVVAREDGAGEKRLVAYVVPAAGAE----------------LDAAELRAFLA 414

Query: 287 EKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
           E+ L  +  P  FV      PLT  GK+ R
Sbjct: 415 ER-LPDYMVPSAFV-VLDALPLTPNGKVDR 442

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  100 bits (250), Expect = 6e-24
 Identities = 90/341 (26%), Positives = 140/341 (41%), Gaps = 62/341 (18%)

Query: 1   MAMLMVGACHVFIPK---FESKSAL----EAVEQHCVTSLITVPAIMADLATLIRVKKTW 53
           +A L  GA  V +P    F + + +    + VE++ VT L  VP ++A L  +       
Sbjct: 63  LAPLARGA-TVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLG---- 117

Query: 54  KGRD--SVKKILNGGGGLPSELMK--EATNSFPKAKLISAYGMTETSSSLTFMTLYDPTL 109
              D  S++  L G   LP E+ +  EA    P   ++  YGMTE +         +P  
Sbjct: 118 -DADISSLRYALTGAAPLPVEVARRFEAVTGVP---VVEGYGMTEGTGVSAI----NP-- 167

Query: 110 ETPGQLPQAFGNVTPNSVHQP---QGVCVGKPAP-HVELKVCSDGSSHVGRILTRGAHVM 165
                     G   P SV        V V K        + C+ G   VG +  RG +V 
Sbjct: 168 --------RGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGE--VGVLAIRGPNVF 217

Query: 166 LRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL 225
             Y +           + WL+TGD+G ID  G +WL GR    I  GG N+ P+ +E  L
Sbjct: 218 PGYLNDAHNA-GARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEAL 276

Query: 226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELL--LSSEVLRQ 283
           L+HP +     VG  +A   E+ VA V+L+     +E          ELL  + + +  +
Sbjct: 277 LRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEG---------ELLAFVKARIPER 327

Query: 284 HCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM 324
               K         ++++     PLT+ GKI +  +R +  
Sbjct: 328 AAVPK--------AIYII--DALPLTAVGKIFKPRLRCDAA 358

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  100 bits (250), Expect = 1e-23
 Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 42/257 (16%)

Query: 21  ALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD----SVKKILNGGGGLPSELMKE 76
             +A+ +   + +   PA+      L  V +  +       S++++L+ G  +P +L++ 
Sbjct: 165 LAQAIREIGASCVFGSPAL------LKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRR 218

Query: 77  ATNSF-PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCV 135
              +  P+A++ + YG TE +  +  +   +  +      P   G           GVCV
Sbjct: 219 FVANLMPEAEIHTPYGATE-ALPVASIEGRE--VLAESAEPPEAGA----------GVCV 265

Query: 136 GKPAPHVELKV--CSDGSSH------------VGRILTRGAHVMLRYWDQFLA--KPSVS 179
           G P P +++++    DG               VG I+  G HV   Y+++  A     +S
Sbjct: 266 GHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKIS 325

Query: 180 TGE-VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVG 238
            G  +W   GD+G  DD G +W  GR+  R+++ G  ++   VE V  +HPG+    +VG
Sbjct: 326 DGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVG 385

Query: 239 IANARLTEMVVACVRLR 255
           +     T+  V  V   
Sbjct: 386 VGKP-GTQAPVLVVEPM 401

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 98.6 bits (246), Expect = 5e-23
 Identities = 83/329 (25%), Positives = 127/329 (38%), Gaps = 60/329 (18%)

Query: 4   LMVGACHVFIPKFESKSA-LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD---SV 59
           L  GA  V +P + +  A L+ + +H  T L  VPA+   L     ++          SV
Sbjct: 156 LFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRAL-----LESGAGSAPLFRSV 210

Query: 60  KKILNGGGGLPS---ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP 116
           +  ++ G  LP+   E   EAT      +++   G TE                      
Sbjct: 211 RLCVSAGEALPAGLAERWAEATG----IEILDGIGSTEVL-------------------- 246

Query: 117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQ 171
             F +  P +     G   G+P P  E ++  +      +  VG +  RG  +   YW+ 
Sbjct: 247 HIFISNRPGAARP--GTT-GRPVPGYEARLVDESGREVPAGTVGDLWVRGPSLAPGYWNL 303

Query: 172 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
              K   +  + WL TGD  S D  G     GR +  IK  G+ V P EVEA L +HP +
Sbjct: 304 -PEKTQRTLRDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAV 362

Query: 232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
               VV + +      + A V  R                ++LL     L +  RE+ L 
Sbjct: 363 AEAAVVAVPDEDGLVRLKAFVVPRP-----------GEAIQQLL--ERDLHRFLRER-LA 408

Query: 292 GFKAPRLFVLWRKPFPLTSTGKIRRDEVR 320
            +K PR         P T+TGK++R  +R
Sbjct: 409 PYKCPRQIEF-LDTLPRTATGKLQRFRLR 436

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 98.8 bits (247), Expect = 6e-23
 Identities = 88/332 (26%), Positives = 142/332 (42%), Gaps = 68/332 (20%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV-KKTWKGRD--SVK 60
           + +G+  V   +F+ ++ LE + +H  T+L+ VP +M  L+ ++ +  +     D  S+K
Sbjct: 270 MALGSTVVLRRRFDPEATLEDIAKHKATALVVVP-VM--LSRILDLGPEVLAKYDTSSLK 326

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            I   G  L  EL   A  +F    L + YG TE + +         T+ TP  L +A G
Sbjct: 327 IIFVSGSALSPELATRALEAFGPV-LYNLYGSTEVAFA---------TIATPEDLAEAPG 376

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFLAK 175
                         VG+P   V +K+  +         VGRI          Y D     
Sbjct: 377 -------------TVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDG--RD 421

Query: 176 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235
             +  G   L +GD+G  D+ G +++ GR +  I SGGENV+P EVE +L  HP ++   
Sbjct: 422 KQIIDG--LLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAA 479

Query: 236 VVGIAN----ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
           V+G+ +     RL   VV                    K     L  + ++ + R+ NL 
Sbjct: 480 VIGVDDEEFGQRLRAFVV--------------------KAPGAALDEDAIKDYVRD-NLA 518

Query: 292 GFKAPR--LFVLWRKPFPLTSTGKIRRDEVRR 321
            +K PR  +F+      P   TGK+ + E+R 
Sbjct: 519 RYKVPRDVVFL---DELPRNPTGKVLKRELRE 547

Length = 549

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 98.7 bits (246), Expect = 7e-23
 Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 62/318 (19%)

Query: 15  KFESKSALEAVEQHCVTSLITVPAIMADLATLI-RVKKTWKGRDSVKKILNGGGGLPSEL 73
           +F+ ++ L+ +++H  T L  VP +   +  L   V+  + GR S++     G  +  ++
Sbjct: 270 RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGR-SLRFAAASGSRMRPDV 328

Query: 74  MKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGV 133
           +    + F    + + Y  TE     T          TP  L  A     P++       
Sbjct: 329 VIAFMDQFGDV-IYNNYNATEAGMIAT---------ATPADLRAA-----PDTA------ 367

Query: 134 CVGKPAPHVELKV-------CSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV--- 183
             G+PA   E+++          G   VG I  R          QF    S ST +    
Sbjct: 368 --GRPAEGTEIRILDQDFREVPTG--EVGTIFVRND-------TQFDGYTSGSTKDFHDG 416

Query: 184 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 243
           ++ +GD+G +D+ G +++VGR +  I SGGENVYP EVE  L  HP +    V+G+ + +
Sbjct: 417 FMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQ 476

Query: 244 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWR 303
             + + A V L+                     + E L+QH R+ NL  +K PR  V+  
Sbjct: 477 YGQRLAAFVVLKP----------------GASATPETLKQHVRD-NLANYKVPRDIVVLD 519

Query: 304 KPFPLTSTGKIRRDEVRR 321
           +  P  +TGKI R E++ 
Sbjct: 520 E-LPRGATGKILRRELQA 536

Length = 537

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 98.6 bits (246), Expect = 9e-23
 Identities = 74/267 (27%), Positives = 110/267 (41%), Gaps = 46/267 (17%)

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            + NGGG      + E         +   YG++ETS   T                    
Sbjct: 330 IVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVAT-------------------- 369

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSD-GSS----HVGRILTRGAHVMLRYWDQFLAK 175
              P    +  G  +G P P  E+ +  D G+       G I  RG  VM  YW++    
Sbjct: 370 -CNPVDATEFSG-TIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDET 427

Query: 176 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235
             V T + +  TGD+G +D+ G   +V R+   I   G NVYP E+E V+  HPG++ + 
Sbjct: 428 AKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVA 487

Query: 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKA 295
            VG+ +    E V   V                   K+  L+ E ++  C+E  LT +K 
Sbjct: 488 AVGVPDEHSGEAVKLFV-----------------VKKDPALTEEDVKAFCKE-RLTNYKR 529

Query: 296 PRLFVLWRKPFPLTSTGKIRRDEVRRE 322
           P+ FV +R   P T+ GKI R E+R  
Sbjct: 530 PK-FVEFRTELPKTNVGKILRRELRDG 555

Length = 557

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 97.3 bits (243), Expect = 9e-23
 Identities = 66/250 (26%), Positives = 100/250 (40%), Gaps = 40/250 (16%)

Query: 4   LMVGACHVFIPKFESKSALE----AVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
           L+ GA  V  P+ E +         + +H VT L   P+++A LA  +          S+
Sbjct: 183 LLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLAAAL-----PPALASL 237

Query: 60  KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           + ++ GG  L   L+       P A+LI+ YG TET+   T  TL DP            
Sbjct: 238 RLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTA-TLVDPDDAPRESP---- 292

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQ--- 171
                        V +G+P  +  L V  D    V     G +   G  V   Y ++   
Sbjct: 293 -------------VPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPEL 339

Query: 172 ----FLAKPSV-STGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226
               F+  P     G     TGD+      GN+  +GR + ++K  G  +   E+EA LL
Sbjct: 340 TAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALL 399

Query: 227 QHPGIIGIVV 236
           +HPG+   VV
Sbjct: 400 RHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 84/325 (25%), Positives = 134/325 (41%), Gaps = 58/325 (17%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           MA    GA  V + K+ +++    V ++  T    +P ++  L  +++       +  ++
Sbjct: 234 MAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTL--MVQPPSANDRQHCLR 291

Query: 61  KI---LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
           ++   LN      S+  K+A       +L+++YGMTET   +          + PG    
Sbjct: 292 EVMFYLN-----LSDQEKDAFEERFGVRLLTSYGMTETIVGIIG--------DRPGD--- 335

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH-----VGRILTRGA---HVMLRYW 169
                       P    +G+P    E ++  D +       +G I  +G     +   Y+
Sbjct: 336 --------KRRWPS---IGRPGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYY 384

Query: 170 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
               A   V   + WL TGD G +D+ G  + V RR   IK GGENV   E+E ++  HP
Sbjct: 385 LDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHP 444

Query: 230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKN 289
            I  IVVVGI ++   E + A V L E                   LS E     C E+N
Sbjct: 445 KIQDIVVVGIKDSIRDEAIKAFVVLNEGET----------------LSEEEFFAFC-EQN 487

Query: 290 LTGFKAPRLFVLWRKPFPLTSTGKI 314
           +  FK P  ++  RK  P   +GKI
Sbjct: 488 MAKFKVP-SYLEIRKDLPRNCSGKI 511

Length = 517

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 96.2 bits (240), Expect = 6e-22
 Identities = 93/353 (26%), Positives = 136/353 (38%), Gaps = 85/353 (24%)

Query: 2   AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWK-GRDSVK 60
            +      +V + K + K   + + +H VT     P +++    LI     W+ G D   
Sbjct: 243 TVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLS---ALINAPAEWRAGIDHPV 299

Query: 61  KILNGGGGLPS---ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPT---LETPG- 113
             +  G   P+     M+E    F    L   YG+TET         Y P       P  
Sbjct: 300 HAMVAGAAPPAAVIAKMEEI--GF---DLTHVYGLTET---------YGPATVCAWQPEW 345

Query: 114 -QLP---QAFGNVTPNSVHQPQGVC-------------VGKPAPHVELKVCSDGSSHVGR 156
             LP   +A        +   QGV                +P P        DG + +G 
Sbjct: 346 DALPLDERA-------QLKARQGVRYPLQEGVTVLDPDTMQPVPA-------DGET-IGE 390

Query: 157 ILTRGAHVMLRYWDQFLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSG 212
           I+ RG  VM  Y    L  P  +T E     W  TGD+  +   G + +  R    I SG
Sbjct: 391 IMFRGNIVMKGY----LKNPK-ATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISG 445

Query: 213 GENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNK 272
           GEN+   EVE VL +HP ++   VV   + +  E+  A V L++    +E          
Sbjct: 446 GENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATE---------- 495

Query: 273 ELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
                 E +  HCRE +L GFK P+  V      P TSTGKI++  +R +  S
Sbjct: 496 ------EEIIAHCRE-HLAGFKVPKAVVF--GELPKTSTGKIQKFVLREQAKS 539

Length = 545

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 96.1 bits (239), Expect = 7e-22
 Identities = 83/337 (24%), Positives = 144/337 (42%), Gaps = 50/337 (14%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR--DS 58
           + +L +G+  V + +F++   ++ +++  VT    VP I+     L +  K   G    S
Sbjct: 264 VGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILM---ALTKKAKGVCGEVLKS 320

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           +K++  G   L  + +++   + P    I  YGMTE++                     A
Sbjct: 321 LKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTEST---------------------A 359

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVC--SDGS----SHVGRILTRGAHVMLRYWDQF 172
            G    N+    +   VG  AP+++ KV   S G      + G +  +G  VM  Y +  
Sbjct: 360 VGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNP 419

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A  S    + WL TGDI   D+ G +++V R    IK  G  + P ++EAVL+ HP II
Sbjct: 420 KATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEII 479

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              V  + +    E+ VA V                 + +   LS E +  +   K +  
Sbjct: 480 DAAVTAVPDKECGEIPVAFV----------------VRRQGSTLSQEAVINYV-AKQVAP 522

Query: 293 FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 329
           +K  R  V++ +  P +  GKI R E++R + + + S
Sbjct: 523 YKKVRK-VVFVQSIPKSPAGKILRRELKRSLTNSVSS 558

Length = 560

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 83/274 (30%), Positives = 118/274 (43%), Gaps = 38/274 (13%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +  L VGA  + +PKFE  + LE +++H VT    VP I+  +A    V+K     D  S
Sbjct: 244 LCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEK----YDLSS 299

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET----SSSLTFMTLYDPTLETPGQ 114
           ++ +L+G   L  EL        P A L   YGMTE     +  L F    +P     G 
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK--EPFPVKSG- 356

Query: 115 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV------CSDGSSHVGRILTRGAHVMLRY 168
              + G V  N+                ELK+       S   +  G I  RG  +M  Y
Sbjct: 357 ---SCGTVVRNA----------------ELKIVDPETGASLPRNQPGEICIRGPQIMKGY 397

Query: 169 WDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 228
            +   A  +    + WL TGDIG IDD   +++V R    IK  G  V P E+EA+L+ H
Sbjct: 398 LNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISH 457

Query: 229 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSE 262
           P I    VV + +    E+ VA V      + +E
Sbjct: 458 PSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITE 491

Length = 537

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 94.7 bits (236), Expect = 1e-21
 Identities = 87/325 (26%), Positives = 133/325 (40%), Gaps = 48/325 (14%)

Query: 7   GACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN 64
           GA  V +P  +F+       VE+H VT+L TVP I+  L     V +      S++ ++ 
Sbjct: 230 GAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDR--YDHSSLRYVIY 287

Query: 65  GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTP 124
            G  +     K A     K  L+  +G+ E + ++T +    P L      P A   +  
Sbjct: 288 AGAPMYRADQKRALAKLGK-VLVQYFGLGEVTGNITVLP---PALHDAEDGPDA--RI-- 339

Query: 125 NSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFLAKPSVS 179
                  G C G     +E+++  D          G I   G  V   Y++   A     
Sbjct: 340 -------GTC-GFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391

Query: 180 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 239
               W  TGD+G +D  G +++ GR +    SGG NVYP E+E  LL HP +  + V+G+
Sbjct: 392 RDG-WFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGV 450

Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELL--LSSEVLRQHCREKNLTGFKAPR 297
            +    E+ VA    R+     E+         ELL  L  +V R          +K P+
Sbjct: 451 PDPVWGEVGVAVCVARDGAPVDEA---------ELLAWLDGKVAR----------YKLPK 491

Query: 298 LFVLWRKPFPLTSTGKIRRDEVRRE 322
            F  W    P +  GKI +  VR E
Sbjct: 492 RFFFW-DALPKSGYGKITKKMVREE 515

Length = 528

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 80/328 (24%), Positives = 128/328 (39%), Gaps = 53/328 (16%)

Query: 4   LMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           L  GA  V     P +  +   EA+E++ VT   T P  +  L  L   +       S++
Sbjct: 236 LASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPY--DLSSLR 293

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            + + G  L  E  +    S     ++  YG TET     F+    P     G       
Sbjct: 294 VLGSAGEPLNPEAFEWF-YSALGVWILDIYGQTETGM--GFIAGRPPV--KNG------- 341

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSD----GSSHVGRILTRGAH--VMLRYWDQFLA 174
                          G P P   ++   D        VG ++ R     + L YW+    
Sbjct: 342 -------------SSGLPLPGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPER 388

Query: 175 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 234
                 G  +  TGD    D+ G  WL GR +  IK  G+ + P E+E+VLL HP +   
Sbjct: 389 YKEAYFGRWYR-TGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEA 447

Query: 235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 294
            VVG+ +    ++V+A V L    + +E             L+ E +R+H   +N+    
Sbjct: 448 AVVGVPDPGKGQIVLAFVVLAAGVEPNE-------------LAEE-IRRHVA-RNIGPHA 492

Query: 295 APRLFVLWRKPFPLTSTGKIRRDEVRRE 322
            PR  + +    P T++GKI+R  +R+ 
Sbjct: 493 IPRK-IRFVDELPKTASGKIQRRLLRKI 519

Length = 528

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 78/321 (24%), Positives = 135/321 (42%), Gaps = 48/321 (14%)

Query: 6   VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNG 65
           +G   V  P+F+ +  L+ +E+H +T +  VP +   L  L    +      S++ +++ 
Sbjct: 220 LGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHA 279

Query: 66  GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPN 125
               P+++ K A   +    +   YG TE+ + +TF T  D  L  PG            
Sbjct: 280 AAPCPADV-KRAMIEWWGPVIYEYYGSTESGA-VTFATSED-ALSHPGT----------- 325

Query: 126 SVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRILTRGAHVML-RYWDQFLAKPSVS 179
                    VGK AP  EL+   +         +G I +R A      Y ++   +  + 
Sbjct: 326 ---------VGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID 376

Query: 180 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 239
            G  ++ +GD+G +D  G ++L  R+   + SGG N+YP E+EAVL   PG+    V GI
Sbjct: 377 RGG-FITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGI 435

Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 299
            +A   E ++A V  +                    L    +R   + + L G+K P+  
Sbjct: 436 PDAEFGEALMAVVEPQP----------------GATLDEADIRAQLKAR-LAGYKVPK-H 477

Query: 300 VLWRKPFPLTSTGKIRRDEVR 320
           +      P   +GKI +  +R
Sbjct: 478 IEIMAELPREDSGKIFKRRLR 498

Length = 509

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 93.1 bits (231), Expect = 7e-21
 Identities = 85/327 (25%), Positives = 130/327 (39%), Gaps = 52/327 (15%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           M  L++ A  V    +    A E + +  VT  +     + DL     VK++     S+ 
Sbjct: 256 MMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRA--VKESGAPVPSLF 313

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
             L  G  +P  L++ A      A ++SA+GMTE  +     T  D  LE          
Sbjct: 314 TFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTV--TEPDDALEK--------- 361

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSS----HVGRILTRGAHVMLRYWDQFLAK 175
                          G+P P VE+KV  ++G+       GR+L RG      Y    L +
Sbjct: 362 ----------ASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGY----LKR 407

Query: 176 PSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233
           P +++   E W DTGD+   D  G + + GR    I  GGEN+   E+E +L QHP +  
Sbjct: 408 PHLNSTDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQ 467

Query: 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 293
           + +V   + RL E   A V  +       +           L + +V  Q+  E      
Sbjct: 468 VAIVAYPDERLGERACAVVVPKPGCTLDFAAM------VAFLKAQKVALQYIPE------ 515

Query: 294 KAPRLFVLWRKPFPLTSTGKIRRDEVR 320
              RL V      P T  GKI++  +R
Sbjct: 516 ---RLEV--VDALPATPAGKIQKFRLR 537

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 93.1 bits (232), Expect = 7e-21
 Identities = 89/358 (24%), Positives = 140/358 (39%), Gaps = 79/358 (22%)

Query: 1   MAMLMVGACHVFIPK---FESKSAL----EAVEQHCVTSLITVPAIMADLATLIRVKKTW 53
           +A L  GA HV +     +     +    + VE++ +  L  VP + A L  +       
Sbjct: 274 LAPLARGA-HVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV----- 327

Query: 54  KGRD--SVKKILNGGGGLPSEL---MKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPT 108
            G D  S++  L G   LP E+    + AT      +++  YG+TE +            
Sbjct: 328 DGHDISSLRYALCGAAPLPVEVFRRFEAAT----GVRIVEGYGLTEATCV---------- 373

Query: 109 LETPGQLPQAFGNVTPNSVHQPQGV-CVGKPAPHVELKVC-SDGSSH---------VGRI 157
                         + N     + +  VG   P+  ++V   D +           VG +
Sbjct: 374 -------------SSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVL 420

Query: 158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 217
              G +V   Y +    K  +   + WL+TGD+G ID  G  WL GR    I  GG N+ 
Sbjct: 421 CIAGPNVFSGYLEAAHNK-GLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNID 479

Query: 218 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 277
           P  +E  LL+HP +     VG  +A   E+ VA V+L+     +E+         ELL  
Sbjct: 480 PAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEA---------ELL-- 528

Query: 278 SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI-----RRDEVRREVMSHLKSL 330
               R H  E+       P+   +     P T+ GKI     RRD +RR + + L+  
Sbjct: 529 -AFARDHIAERA----AVPKHVRIL-DALPKTAVGKIFKPALRRDAIRRVLRAALRDA 580

Length = 632

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 92.3 bits (230), Expect = 8e-21
 Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 58/252 (23%)

Query: 2   AMLMVGACHVFIP----------KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK 51
           A L++GA  + +P            +    + A+ +    SLI VP ++  L     V++
Sbjct: 174 APLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQPHSLILVPQLLMALVAA--VEQ 231

Query: 52  TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKL----ISAYGMTETSSSLTFMTLYDP 107
                +S++ +  GG  +   L++ A        L       YG++E +S ++       
Sbjct: 232 GPLPPESLRFVAVGGARVSPSLLQRA------RALGLPVYEGYGLSECASVVS------- 278

Query: 108 TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLR 167
            L TPG          P SV        GKP PHV++ + +DG      IL RG+ +ML 
Sbjct: 279 -LNTPGADR-------PGSV--------GKPLPHVQVSIANDG-----EILVRGS-LMLG 316

Query: 168 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR-NGRIKSGGENVYPEEVEAVLL 226
           Y  +  A         W  TGD+G +D+ G +++ GR+ N  I S G NV PE VE+ L 
Sbjct: 317 YLGEPPATDD------WWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQ 370

Query: 227 QHPGIIGIVVVG 238
           Q P I   VV G
Sbjct: 371 QAPAIAQAVVFG 382

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 91.4 bits (227), Expect = 2e-20
 Identities = 88/325 (27%), Positives = 133/325 (40%), Gaps = 57/325 (17%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           L  GA  V + +      L+A+++H  T L T P   A  A LI+VK       S++K +
Sbjct: 212 LRFGASAVLLEQATPPLLLKAIQEHRATILFTAPT--AYRAMLIKVKAFDIS--SLRKCV 267

Query: 64  NGGGGLPS---ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           + G  LP+   +   E T      K+I   G TE       + ++         +     
Sbjct: 268 SAGETLPAKVWQDWYERTG----LKIIDGIGATE------MLHIF---------ISANEE 308

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAK 175
           N  P +         GKP P  E ++  D  + V     GR+  RG     RY D    +
Sbjct: 309 NAKPGAT--------GKPVPGYEARIVDDQGNEVPRGEAGRLAVRGP-TGCRYLDDERQQ 359

Query: 176 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235
             V  G  W  TGDI   D+ G    V R +  I S G N+   EVE  LL HP +    
Sbjct: 360 EYVRDG--WNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECA 417

Query: 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKA 295
           V+G+ +    ++V A + LR+  + +E             L +E L+   +   +  +K 
Sbjct: 418 VIGVPDEERGQIVCAHIVLRDGTKATE-------------LLAERLQDFVKA-VIAPYKY 463

Query: 296 PRLFVLWRKPFPLTSTGKIRRDEVR 320
           PR    +    P T TGKI+R  +R
Sbjct: 464 PREIN-FVDALPKTQTGKIQRFRLR 487

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 82/330 (24%), Positives = 136/330 (41%), Gaps = 65/330 (19%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
            A +  GA  V +P+++ ++A   +E++ VT    +P ++ D      + +    RD  S
Sbjct: 251 NAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAE----RDLSS 306

Query: 59  VKKILNGGGGLP---SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 115
           ++ I  GG  +P   +E +KE T        +  YG+TET +          T   P   
Sbjct: 307 LRYIGGGGAAMPEAVAERLKELTG----LDYVEGYGLTETMA---------QTHSNP--- 350

Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVE--------LKVCSDGSSHVGRILTRGAHVMLR 167
                        +P+  C+G P   V+        L+    G   VG I+  G  V   
Sbjct: 351 -----------PDRPKLQCLGIPTFGVDARVIDPETLEELPPGE--VGEIVVHGPQVFKG 397

Query: 168 YWDQFLAKPSVST---GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 224
           YW++  A         G+ +  TGD+G +D+ G  ++  R    I + G  V+P EVE +
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENL 457

Query: 225 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQH 284
           L +HP I    V+   + R  E V A V LR   +                 + E +   
Sbjct: 458 LYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGK--------------TTEEEIIAW 503

Query: 285 CREKNLTGFKAPRLFVLWRKPFPLTSTGKI 314
            RE ++  +K PR+ V +    P + +GKI
Sbjct: 504 ARE-HMAAYKYPRI-VEFVDSLPKSGSGKI 531

Length = 546

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 90.3 bits (225), Expect = 5e-20
 Identities = 54/253 (21%), Positives = 94/253 (37%), Gaps = 36/253 (14%)

Query: 89  AYGMTETSSSLTFMTLYD-PTLETPGQLPQAFGNVTPNSVHQPQG---VCVGKPAPHVEL 144
            YG+ E + +++       P +    +   A G     +         V  G+P P  E+
Sbjct: 307 CYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEV 366

Query: 145 KV--------CSDGSSHVGRILTRGAHVMLRYWDQ------FLAKPSVSTGEVWLDTGDI 190
           ++          DG   VG I  RG  V   YW++             +    WL TGD+
Sbjct: 367 RIVDPETRRPLPDG--EVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDL 424

Query: 191 GSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII--GIVVVGIANARLTEMV 248
           G + DG  +++ GR    I   G N YP+++EA + +    +  G       +    E +
Sbjct: 425 GFLHDG-ELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERL 483

Query: 249 VACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPL 308
           V    +R     ++     +       + + V R+H       G     + ++     P 
Sbjct: 484 VVVAEVRRRGLPAD---LAALAEA---IRAAVAREH-------GVAPADVVLVRPGTLPK 530

Query: 309 TSTGKIRRDEVRR 321
           TS+GKI+R   R 
Sbjct: 531 TSSGKIQRRACRE 543

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 85/336 (25%), Positives = 135/336 (40%), Gaps = 64/336 (19%)

Query: 1   MAMLMVGACHVF--IPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS 58
            A  ++GA        +F+++  LE +E++ VT+    P        L++   +      
Sbjct: 142 FAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTA---YRMLLQQDLSSYDFSH 198

Query: 59  VKKILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL 115
           ++ +++ G  L  E++   + AT       +   YG TET   L            PG  
Sbjct: 199 LRHVVSAGEPLNPEVIDWWRAAT----GLPIRDGYGQTETG--LLVAN-------FPGME 245

Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRI-LTRGAH---VML 166
            +      P S+        G+PAP   + +  D          G I +        +  
Sbjct: 246 VK------PGSM--------GRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFR 291

Query: 167 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226
            Y        +   G+ W  TGD    D+ G  W VGR +  IKS G  + P EVE+ L+
Sbjct: 292 GYLKDPEKTEATIRGD-WYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALI 350

Query: 227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCR 286
           +HP +    VVG  +    E+V A V L   +Q SE             L+ E L++H +
Sbjct: 351 EHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEE------------LAKE-LQEHVK 397

Query: 287 EKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVR 320
           ++    +K PR   FV      P T +GKIRR E+R
Sbjct: 398 KR-TAPYKYPREIEFVE---ELPKTVSGKIRRVELR 429

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 83/323 (25%), Positives = 129/323 (39%), Gaps = 48/323 (14%)

Query: 4   LMVGACHVFIPKF-ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 62
           L VGA  V +P+     +    +E++  T    VP + A  A L   +K  +   S++  
Sbjct: 226 LSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYA--AMLAAPEKPERDLSSLRLC 283

Query: 63  LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
           ++ G  LP+E+       F   +++   G TE       + ++         L    G V
Sbjct: 284 VSAGEALPAEIGYRWKELF-GLEILDGIGSTE------MLHIF---------LSNRPGAV 327

Query: 123 TPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPS 177
              +         GKP P  E+K+  +    V     G +  RG      YW++      
Sbjct: 328 KYGTS--------GKPVPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRE 379

Query: 178 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 237
              GE W  TGD    D+ G  W  GR +  +K  G  V P EVE  LLQHP ++   VV
Sbjct: 380 TFVGE-WTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVV 438

Query: 238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR 297
           G  +        A V L++ +Q S                   L+   ++K L  +K PR
Sbjct: 439 GAEDEDGLTKPKAFVVLKDGYQPSP-------------ELETELKDFVKDK-LAPYKYPR 484

Query: 298 LFVLWRKPFPLTSTGKIRRDEVR 320
                 +  P T+TGKI+R ++R
Sbjct: 485 WIEFVDE-LPKTATGKIQRFKLR 506

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 88.9 bits (220), Expect = 2e-19
 Identities = 87/325 (26%), Positives = 141/325 (43%), Gaps = 42/325 (12%)

Query: 11  VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLP 70
           V + +FE ++ L A+    V+    VP I+ +L     V++    +  ++ I+     L 
Sbjct: 257 VVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLA 316

Query: 71  SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 130
            EL+      FP  ++  AYG+TE S     +TL      T G   +  G    NSV   
Sbjct: 317 PELLTAFEAKFPGVQVQEAYGLTEHSC----ITL------THGDPEKGHGIAKKNSV--- 363

Query: 131 QGVCVGKPAPHVELKVCS--DGSS----HVGRILTRGAHVMLRYWDQFLAKPSVSTGEVW 184
                G   P++E+K      G S      G +  R   VM  Y++           + W
Sbjct: 364 -----GFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGW 418

Query: 185 LDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARL 244
           L TGDIG IDD G++++V R    IK  G  V P E+EA+LL HP +    VV + +   
Sbjct: 419 LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEA 478

Query: 245 TEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRK 304
            E+  ACV +           +  +K  E  + + V        N+  +K  R+ V +  
Sbjct: 479 GEIPAACVVI-----------NPKAKESEEDILNFV------AANVAHYKKVRV-VQFVD 520

Query: 305 PFPLTSTGKIRRDEVRREVMSHLKS 329
             P + +GKI R  ++ +++S  K+
Sbjct: 521 SIPKSLSGKIMRRLLKEKMLSINKA 545

Length = 546

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 88.2 bits (219), Expect = 3e-19
 Identities = 97/336 (28%), Positives = 148/336 (44%), Gaps = 71/336 (21%)

Query: 5   MVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK 61
           + GA  VF+    KF+ K+ LE +E++ VT+    P I      LI+   +     S++ 
Sbjct: 250 IAGAA-VFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTI---YRFLIKEDLSKYDLSSLRY 305

Query: 62  ILNGGGGLPSEL---MKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
               G  L  E+    KE T      KL+  +G TET+ ++      +P    PG +   
Sbjct: 306 CTTAGEPLNPEVFNTFKEKTG----IKLMEGFGQTETTLTIATFPWMEPK---PGSM--- 355

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSS----HVGRILTR---GAHVMLRYWD 170
                            GKP+P  ++ +   DG S      G I+ R   G  + L  + 
Sbjct: 356 -----------------GKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPLGL--FM 396

Query: 171 QFLAKPSVSTGEVWLD----TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226
            +   P   T EVW D    TGD   +D+ G +W VGR +  IKS G  + P EVE+ L+
Sbjct: 397 GYYRDPE-RTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALI 455

Query: 227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCR 286
           QHP ++   V G+ +    ++V A + L + ++ SE             L  E L+ H +
Sbjct: 456 QHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEE------------LKKE-LQDHVK 502

Query: 287 EKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVR 320
            K    +K PR+  FV      P T +GKIRR E+R
Sbjct: 503 -KVTAPYKYPRIIEFV---DELPKTISGKIRRVEIR 534

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 87.5 bits (217), Expect = 4e-19
 Identities = 81/328 (24%), Positives = 126/328 (38%), Gaps = 57/328 (17%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-SVKKI 62
            + G   V  P    +     +E+H VT    VP     LA+L      W+  D S  ++
Sbjct: 254 FLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPP----LASLWLQAAEWERADLSSLRL 309

Query: 63  LNGGGGLPSELMKEATNSFPKA---KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           L  GG   + L        P     +L   +GM E    + +  L DP            
Sbjct: 310 LQVGG---ARLSATLARRVPAVLGCQLQQVFGMAE--GLVNYTRLDDP------------ 352

Query: 120 GNVTPNSVHQPQGVCVGKP-APHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFL 173
               P  +   QG    +P +P  E++V            VG +LTRG + +  Y+    
Sbjct: 353 ----PEIIIHTQG----RPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPE 404

Query: 174 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233
                   + +  +GD+   D  G + + GR   +I  GGE +  EEVE +LL+HP +  
Sbjct: 405 HNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHD 464

Query: 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 293
             +V + +  L E   A + ++E                   L +  LR+  RE+ L  F
Sbjct: 465 AALVAMPDELLGEKSCAFIVVKEP-----------------PLRAAQLRRFLRERGLAAF 507

Query: 294 KAPRLFVLWRKPFPLTSTGKIRRDEVRR 321
           K P          PLT+ GKI +  +RR
Sbjct: 508 KLPDRIEFV-DSLPLTAVGKIDKKALRR 534

Length = 542

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 85.8 bits (212), Expect = 2e-18
 Identities = 77/256 (30%), Positives = 111/256 (43%), Gaps = 47/256 (18%)

Query: 15  KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELM 74
           +F+  +    +E+   T    VP +   LA    ++K    RD       G GG P  L 
Sbjct: 272 RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEK----RDLSSLATIGSGGAP--LP 325

Query: 75  KEATNSFPKA---KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQ 131
            E  N F +    KL S +GMTET S                          P + H P+
Sbjct: 326 VEVANFFERKTGLKLKSGWGMTETCS--------------------------PGTGHPPE 359

Query: 132 GV----CVGKPAPHVELKVCS-DGSS------HVGRILTRGAHVMLRYWDQFLAKPSVST 180
           G      +G   P +EL V S D  +       VG +  RG +V   YW++         
Sbjct: 360 GPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV 419

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
           G+ +L TGDIG +D  G  +LV R+   I SGG NVYP+ +E  + +HPG+  ++V+GI 
Sbjct: 420 GDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIP 478

Query: 241 NARLTEMVVACVRLRE 256
           +    E   A V+LR 
Sbjct: 479 DQYRGEAAKAFVKLRP 494

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 69/299 (23%), Positives = 110/299 (36%), Gaps = 58/299 (19%)

Query: 48  RVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDP 107
           ++K    GR  V+ +L+GG  L  +   E         ++  YG+TET +  T     D 
Sbjct: 262 KIKAALGGR--VRLMLSGGAPLSPDTQ-EFLRVALGCPVLQGYGLTETCAGGTLSDPGDT 318

Query: 108 TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS--------DGSSHVGRILT 159
           T                          VG P P  E+K+                G I  
Sbjct: 319 TTGH-----------------------VGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICI 355

Query: 160 RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYP 218
           RG +V   Y+            + W  TGDIG     G + ++ R+    K S GE V  
Sbjct: 356 RGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVAL 415

Query: 219 EEVEAVLLQHPGIIGIVVVGIANARLTEMVVACV-----RLRESWQWSESNCDQSSKNKE 273
           E++E +    P +  I V G +       +VA V      L    +W+  N       +E
Sbjct: 416 EKLENIYKSSPLVDQICVYGDSLKS---FLVAIVVPDEDVLE---KWAAENGGGGGDFEE 469

Query: 274 LLLSSEV-------LRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVR 320
           L  + ++       L +  +E  L GF+  +   L  +PF      LT T K++R +++
Sbjct: 470 LCNNKKLKKAILKDLNEIGKENGLKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQLK 528

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 93/341 (27%), Positives = 135/341 (39%), Gaps = 76/341 (22%)

Query: 2   AMLMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPA-----IMADLATLIRVKKTW 53
           A    GA  VF    P+F+++  L A+E+  VT+    P      I  DLA    V+   
Sbjct: 146 APWNAGAT-VFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQQDLAQY-DVRL-- 201

Query: 54  KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLIS---AYGMTETSSSLTFMTLYDPTLE 110
             R++V        G P  L  E      KA  ++    YG TET++ +           
Sbjct: 202 --REAV------SAGEP--LNPEVIERVKKAWGLTIRDGYGQTETTAMIG---------N 242

Query: 111 TPGQLPQAFGNVTPNSVHQPQGVCVGKPAP--HVEL-----KVCSDGSSHVG-RILTRGA 162
           +PGQ       V P S+        G+P P   V L     K        +   +  R  
Sbjct: 243 SPGQ------KVKPGSM--------GRPLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288

Query: 163 HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 222
            +ML Y        +   G  +  TGD    D+ G +W VGR +   KS    + P EVE
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYR-TGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVE 347

Query: 223 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 282
           + LL+HP +    VV   +     +  A + L+  ++ S          +EL L    L 
Sbjct: 348 SALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPS----------RELALE---LF 394

Query: 283 QHCREKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVRR 321
            H RE+ L  +K  R   FV      P T +GKIRR E+R+
Sbjct: 395 AHVRER-LAPYKRIRRIEFV---GELPKTISGKIRRVELRK 431

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 15/131 (11%)

Query: 184 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 243
           W+  GD+G +D+ G ++L  R++  I SGG N+YP+E+E +L+ HP +  + V G+ +  
Sbjct: 370 WVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE 429

Query: 244 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWR 303
           + E V A V+            D +     L   +  L    R   L  +K PR      
Sbjct: 430 MGERVKAVVQPA----------DGADAGDAL---AAELIAWLRG-RLAHYKCPRSIDF-E 474

Query: 304 KPFPLTSTGKI 314
              P T TGK+
Sbjct: 475 DELPRTPTGKL 485

Length = 502

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 85/338 (25%), Positives = 125/338 (36%), Gaps = 68/338 (20%)

Query: 2   AMLMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS 58
             L  GA  V   +   +      E V++H VT   +VPA+M  L T        +   S
Sbjct: 187 GALSAGAALVLPDEARRRDPDHWAELVQRHGVTVWNSVPALMDMLLTYAEDAA--RLLPS 244

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS--SSLTFMTLYDPTLETPGQLP 116
           ++ ++  G  +P +L +      P A+L+S  G TE S  S       Y           
Sbjct: 245 LRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASIWS-----IYYP---------- 289

Query: 117 QAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYW-- 169
               +V P+    P     GKP P+ +  V  +          G +   G  V L YW  
Sbjct: 290 --IDDVDPDWRSIP----YGKPLPNQKFYVLDEDGRDCPDWVPGELYIGGVGVALGYWGD 343

Query: 170 -----DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 224
                ++F+      TGE    TGD+G     G +  +GR + ++K  G  V   E+EA 
Sbjct: 344 PELTAERFITHR---TGERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAA 400

Query: 225 LLQHPGIIGIVVVGIANA---RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVL 281
           L +HPG+   VVV + +     L   VVA                             VL
Sbjct: 401 LARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDA--------------------AVL 440

Query: 282 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 319
           R    E  L  +  P  FV      PLT+ GK+ R  +
Sbjct: 441 RAALAEL-LPAYMVPSRFV-VLDALPLTANGKVDRKAL 476

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 78/293 (26%), Positives = 119/293 (40%), Gaps = 49/293 (16%)

Query: 36  VPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 95
           VP I   L      + + +   +++ I +    L +E  +     F  A ++ A+GMTE 
Sbjct: 274 VPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEA 332

Query: 96  S--SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS- 152
           +   + T +     T E P         V+   V +  G         + + V SDG   
Sbjct: 333 THQVTTTQIEGIGQT-ENPV--------VSTGLVGRSTG-------AQIRI-VGSDGLPL 375

Query: 153 ---HVGRILTRGAHVMLRYWDQFLAKPSVSTGEV---WLDTGDIGSIDDGGNVWLVGRRN 206
               VG +  RG  V+  Y    L  P+++       WL TGD+GS+   G++ + GR  
Sbjct: 376 PAGAVGEVWLRGTTVVRGY----LGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIK 431

Query: 207 GRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCD 266
             I  GGE + PE VE VL  HP ++   V G+ +    E V A +  RES         
Sbjct: 432 ELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRES--------- 482

Query: 267 QSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 319
                     ++E L Q CRE+ L  F+ P  F       P T+ G + R  V
Sbjct: 483 -------APPTAEELVQFCRER-LAAFEIPASFQE-ASGLPHTAKGSLDRRAV 526

Length = 534

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 78.8 bits (195), Expect = 4e-16
 Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 55/293 (18%)

Query: 22  LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81
             A+E++ VT+L   PA++  L      +       S++++++ G  +P  +++      
Sbjct: 255 FAAIERYGVTNLFGSPALLERLG--RYGEANGIKLPSLRRVISAGAPVPIAVIERFRAML 312

Query: 82  PK-AKLISAYGMTET--SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP 138
           P  A++++ YG TE    SS+    +   T              T        G+CVG+P
Sbjct: 313 PPDAEILTPYGATEALPISSIESREILFAT-----------RAAT----DNGAGICVGRP 357

Query: 139 APHVELKV---------CSDGSS-----HVGRILTRGAHVMLRYWDQ----FLAKPSVST 180
              VE+++           D +       +G I+  G  V   Y+++     LAK     
Sbjct: 358 VDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQ 417

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII--GIVVVG 238
           G+VW   GD+G +D  G +W  GR+  R+++ G  +Y    E +   HPG+    +V VG
Sbjct: 418 GDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVG 477

Query: 239 IANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT 291
           +  A   +  V CV         E     +     L    + LR        T
Sbjct: 478 VPGA---QRPVLCV---------ELEPGVACSKSALY---QELRALAAAHPHT 515

Length = 552

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 60/193 (31%), Positives = 82/193 (42%), Gaps = 29/193 (15%)

Query: 136 GKPAPHVELKVCS---------DGSSHVGRI-LTRGAHVMLR-YW-DQFLAKPSVSTGEV 183
           G+P P +E  V            G   VG + L  G   M R Y  ++     S   G  
Sbjct: 263 GRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDG-- 320

Query: 184 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 243
           W  TGD+   D+ G  W VGR +  IK+ G  V P EVE+ L++HP +    V+G  +  
Sbjct: 321 WYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPV 380

Query: 244 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWR 303
             E+V A V LR  ++ SE          EL      L    R++ L    APR    + 
Sbjct: 381 AGEIVKAFVSLRPGFEPSE----------EL---RRELLTFARQR-LGAAVAPREIH-FV 425

Query: 304 KPFPLTSTGKIRR 316
              P T +GKI R
Sbjct: 426 DNLPKTRSGKIMR 438

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 70/300 (23%), Positives = 113/300 (37%), Gaps = 68/300 (22%)

Query: 57  DSVKKILNGGG-----------------GLPSELMKEATNSFPKAKLISAYGMTETSSSL 99
            S++ I+N G                  GLP++ ++             A+GM+ET S +
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIR------------PAFGMSETCSGV 336

Query: 100 TF-MTLYDPTLETPGQLPQAFGNVTPNSVHQPQG---VCVGKPAPHVELKVCSDGSS--- 152
           T+              +    G +   +   P+    V +G+P P V +++  +  +   
Sbjct: 337 TYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVDEDGALLP 396

Query: 153 --HVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK 210
              VGR+  RG  V   Y+    A     T + W  TGD+G + D G + + GR    I 
Sbjct: 397 EGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLHD-GRLTITGREKDMII 455

Query: 211 SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVAC-VRLRESWQWSESNCDQ-- 267
             G N Y  E+EA + Q PG+                  AC VR       + S  D+  
Sbjct: 456 INGVNYYNHEIEAAVEQVPGV------------EPSFTAACAVRD------AGSGTDELA 497

Query: 268 ------SSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 321
                    +  L      +R H   K   G     +  L ++ FP TS GKI+R ++R+
Sbjct: 498 VFFVPRYDLDDRLAALLRAIRTHVARK--IGIAPAYVIPLAKEDFPKTSLGKIQRAQLRK 555

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 78.1 bits (192), Expect = 6e-16
 Identities = 88/308 (28%), Positives = 137/308 (44%), Gaps = 40/308 (12%)

Query: 25  VEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN-SFPK 83
           +E H VT +  VP +   L     +  +   R     +L GG   P+ L+K+     F  
Sbjct: 270 IEMHNVTHMCCVPTVFNILLKGNSLDLS--PRSGPVHVLTGGSPPPAALVKKVQRLGF-- 325

Query: 84  AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVE 143
            +++ AYG+TE +  + F    D       +LP+         +   QGV +   A  V+
Sbjct: 326 -QVMHAYGLTEATGPVLFCEWQDEW----NRLPEN----QQMELKARQGVSILGLA-DVD 375

Query: 144 LK-------VCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV----WLDTGDIGS 192
           +K       V  DG + +G I+ +G+ +M  Y    L  P  +T E     WL+TGD+G 
Sbjct: 376 VKNKETQESVPRDGKT-MGEIVIKGSSIMKGY----LKNPK-ATSEAFKHGWLNTGDVGV 429

Query: 193 IDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACV 252
           I   G+V +  R    I SGGEN+   EVE VL ++P ++   VV + +    E   A V
Sbjct: 430 IHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFV 489

Query: 253 RLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTG 312
            L +     E   D+      L+     L ++CRE NL  F  PR  V  ++  P    G
Sbjct: 490 VLEKGETTKEDRVDK------LVTRERDLIEYCRE-NLPHFMCPRKVVFLQE-LPKNGNG 541

Query: 313 KIRRDEVR 320
           KI + ++R
Sbjct: 542 KILKPKLR 549

Length = 579

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 20/131 (15%)

Query: 135 VGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYW-------DQFLAKPSVSTG 181
           VG P P V L+V    +        +G I  +G +V   YW       ++F         
Sbjct: 323 VGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEF-------RA 375

Query: 182 EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 241
           + +  TGD+G ID+ G V +VGR    I SGG NVYP+EVE  + + PG++   V+G+ +
Sbjct: 376 DGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPH 435

Query: 242 ARLTEMVVACV 252
               E V A V
Sbjct: 436 PDFGEGVTAVV 446

Length = 504

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 18/131 (13%)

Query: 135 VGKPAPHVELK--------VCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVS----TGE 182
           VG P   VE +        V  DG + VG +  RG  +    +D +L +P  +    T +
Sbjct: 295 VGLPLAGVETRLVDEDGGPVPHDGET-VGELQVRGPTL----FDGYLNRPDATAAAFTAD 349

Query: 183 VWLDTGDIGSIDDGGNVWLVGRRN-GRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN 241
            W  TGD+  +D  G   +VGR +   IKSGG  +   E+E  LL HPG+    VVG+ +
Sbjct: 350 GWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPD 409

Query: 242 ARLTEMVVACV 252
             L + +VA V
Sbjct: 410 DDLGQRIVAYV 420

Length = 471

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 75.3 bits (186), Expect = 4e-15
 Identities = 70/283 (24%), Positives = 104/283 (36%), Gaps = 69/283 (24%)

Query: 53  WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETP 112
           W+GR+S+   L GG  LP +L           +L+S      T + L  M  Y PT ET 
Sbjct: 203 WRGRESLT-ALCGGEALPRDL---------AERLLS------TGAELWNM--YGPT-ETT 243

Query: 113 -----GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-------GSSHVGRILTR 160
                 ++  A G VT           +G+P  + ++ V  +       G    G +   
Sbjct: 244 IWSTCARVTAADGPVT-----------IGRPIANTQVYVLDEDLQPVPPGV--PGELYIG 290

Query: 161 GAHVMLRYWDQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGG 213
           G  V   Y  +       F+  P    G     TGD+      G +  +GR + ++K  G
Sbjct: 291 GDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRG 350

Query: 214 ENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKE 273
             +   E+EA L  HPG+   VVV        + +VA V  +                  
Sbjct: 351 FRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAA-------------- 396

Query: 274 LLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
               +E LR   R   L  +  P  FV   +  PLT  GK+ R
Sbjct: 397 --PDAEALRAALRAT-LPAYMVPAAFVQLDE-LPLTPNGKVDR 435

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 74.9 bits (185), Expect = 5e-15
 Identities = 78/277 (28%), Positives = 113/277 (40%), Gaps = 67/277 (24%)

Query: 58  SVKKILNGGGGLPSELMKEATNSFPKAKLISA---YGMTETSSSLTFMTLYDPTLETPGQ 114
           S+K +L GG  +P EL ++A       + I     YG+TE +S++      D      G 
Sbjct: 241 SLKAVLLGGAAIPVELTEQAE-----QQGIRCWCGYGLTEMASTVC-AKRAD---GLAG- 290

Query: 115 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELK-VCSDGSSHVGRILTRGAHVMLRYWDQFL 173
                               VG P P  E+K V        G I  RGA + L YW Q  
Sbjct: 291 --------------------VGSPLPGREVKLVD-------GEIWLRGASLALGYWRQGQ 323

Query: 174 AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG 233
             P V+  E W  T D G     G + ++GR +    SGGE + PEE+E V+ QHP +  
Sbjct: 324 LVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQ 381

Query: 234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF 293
           + VV +A+A   +  VA V        S+S                 L +  ++K L  F
Sbjct: 382 VFVVPVADAEFGQRPVAVVE-------SDSEAAV-----------VNLAEWLQDK-LARF 422

Query: 294 KAP-RLFVLWRKPFPLTSTG-KIRRDEVRREVMSHLK 328
           + P   ++L   P  L + G KI R  ++  V   L 
Sbjct: 423 QQPVAYYLL---PPELKNGGIKISRQALKEWVAQQLG 456

Length = 458

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 75.2 bits (185), Expect = 6e-15
 Identities = 78/331 (23%), Positives = 126/331 (38%), Gaps = 59/331 (17%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           + +   G C V  P          +E+H VT    VP      A  + ++   K R  + 
Sbjct: 244 LGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPP-----AVALWMQAASKSRADLS 298

Query: 61  --KILNGGGGLPSELMKEATNSFPKA---KLISAYGMTETSSSLTFMTLYDPTLETPGQL 115
             K+L  GG   S     A    P     +L   +GM E   + T        L+ P ++
Sbjct: 299 SLKLLQVGGAKFSA---AAARRVPAVFGCQLQQVFGMAEGLVNYT-------RLDDPAEI 348

Query: 116 PQAFGNVTPNSVHQPQGVCVGKP-APHVELKVCSD-----GSSHVGRILTRGAHVMLRYW 169
                      +   QG    +P +P  E++V  D          G +LTRG +    Y+
Sbjct: 349 -----------IFTTQG----RPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYY 393

Query: 170 DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
                  +    E +  TGD+  +   G + +VGR   +I  GGE +  EE+E +LL HP
Sbjct: 394 KAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHP 453

Query: 230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKN 289
            +    +V + +  L E   A + +R+                   L +  LR+  RE+ 
Sbjct: 454 AVHDAALVSMPDELLGEKSCAFIVVRDP-----------------ALKAAQLRRFLRERG 496

Query: 290 LTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 320
           L  +K P          PLT+ GK+ +  +R
Sbjct: 497 LAEYKLPDRVEFVDS-LPLTAVGKVDKKALR 526

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 74.9 bits (185), Expect = 7e-15
 Identities = 79/339 (23%), Positives = 126/339 (37%), Gaps = 78/339 (23%)

Query: 2   AMLMVGACHVFIPK--FESKSAL-EAVEQHCVTSL-ITVP----AIMADLATLIRVKKTW 53
             L+ G   V I K        L   + +  VT L +T       +  D   L       
Sbjct: 187 GALLNGGRLVLIDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPEAL------- 239

Query: 54  KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DPTLET 111
                ++++L GG  L    ++    + P  +LI+ YG TE +   TF T +      E 
Sbjct: 240 ---AGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTENT---TFSTCHVITRLDEA 293

Query: 112 PGQLPQAFGNVTPNSVHQPQGVCVGKPAPH-------VELKVCSDGSSHVGRILTRGAHV 164
              +P                  +G+P P+        E +    G    G +   G  +
Sbjct: 294 ADSIP------------------IGRPIPNTTVYILDEEGQPVPIGV--PGELYVGGDGL 333

Query: 165 MLRYWDQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 217
            L Y ++       F+  P    GE    TGD+      GN+  +GR + ++K  G  + 
Sbjct: 334 ALGYLNRPELTAERFVPDPFGP-GERLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIE 392

Query: 218 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 277
             E+E  LLQHPG+    V+   +A   + +VA V  R +                  L 
Sbjct: 393 LGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGA------------------LD 434

Query: 278 SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
           +  LR H  E+ L  +  P  FV+  +  PLT+ GK+ R
Sbjct: 435 AAELRAHLAER-LPAYMVPAAFVVLDE-LPLTANGKVDR 471

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 73.0 bits (179), Expect = 3e-14
 Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 28/181 (15%)

Query: 146 VCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR 205
           V +DG + +G I+ RG  VM  Y     A         W  +GD+G     G + +  R 
Sbjct: 395 VPADGKT-MGEIVMRGNMVMKGYLKNPKANEEAFANG-WFHSGDLGVKHPDGYIEIKDRS 452

Query: 206 NGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNC 265
              I SGGEN+   EVE V+  HP ++   VV    AR  E            +W ES C
Sbjct: 453 KDIIISGGENISSLEVENVVYTHPAVLEASVV----ARPDE------------RWGESPC 496

Query: 266 ------DQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV 319
                     K+ E  L+ ++++  CRE+ L  +  P+  V    P P T+TGKI++  +
Sbjct: 497 AFVTLKPGVDKSDEAALAEDIMK-FCRER-LPAYWVPKSVVF--GPLPKTATGKIQKHVL 552

Query: 320 R 320
           R
Sbjct: 553 R 553

Length = 567

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 71/263 (26%), Positives = 100/263 (38%), Gaps = 68/263 (25%)

Query: 62  ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 121
           +L GGG  P+ ++  A  +     ++  YGM+ETS                         
Sbjct: 156 VLVGGGPAPAPVLDAAAAA--GINVVRTYGMSETS------------------------- 188

Query: 122 VTPNSVHQPQGVCV--GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVS 179
                     G CV  G P   V ++V  DG     RI   G  +   Y +     P   
Sbjct: 189 ----------GGCVYDGVPLDGVRVRV-EDG-----RIALGGPTLAKGYRNPVDPDPFAE 232

Query: 180 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 239
            G  W  T D+G++DDG  + ++GR +  I +GG  V P+ VEA L  HP +    V G+
Sbjct: 233 PG--WFRTDDLGALDDG-VLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGL 289

Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR-L 298
            + RL + VVA V                      L   E LR H   + L    APR L
Sbjct: 290 PDDRLGQRVVAAVVGDGGP-------------APTL---EALRAHV-ARTLDRTAAPREL 332

Query: 299 FVLWRKPFPLTSTGKIRRDEVRR 321
            V+     P    GK+ R  + R
Sbjct: 333 HVV--DELPRRGIGKVDRRALVR 353

Length = 358

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 73.1 bits (179), Expect = 3e-14
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 41/221 (18%)

Query: 22  LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81
           LE +E   +T L+ VP ++  L             + ++++L+GG  LP  L++      
Sbjct: 450 LELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLA 509

Query: 82  PKAK-LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAP 140
             A+ L++ YG TE +        +  + E   ++P                  +G+P  
Sbjct: 510 ALARRLLNLYGPTEAT---LDAPSFPISAELESRVP------------------IGRPVA 548

Query: 141 HVELKV-------CSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGE-----VWLDTG 188
           + +L +          G    G +   G  + L Y ++        T E         TG
Sbjct: 549 NTQLYILDQGLRPLPLGV--PGELYIAGLGLALGYLNR-----PDLTAERFIALRLYRTG 601

Query: 189 DIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
           D+      G +  +GR++ ++K  G  +   E+EA L + P
Sbjct: 602 DLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642

Length = 642

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 47/151 (31%), Positives = 62/151 (41%), Gaps = 29/151 (19%)

Query: 89  AYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS 148
            YGMTE  +  T     D  + T                       VGKP P VELK+  
Sbjct: 305 GYGMTENFAYSTLNYPGDRRIGT-----------------------VGKPIPGVELKI-- 339

Query: 149 DGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGR 208
              S  G IL R   +M  Y+          T + WL TGD G ID+ G + + GR    
Sbjct: 340 ---SEDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKEL 396

Query: 209 IK-SGGENVYPEEVEAVLLQHPGIIGIVVVG 238
            K S G+ V P  +E +L  +P +  + VVG
Sbjct: 397 FKTSKGKYVAPAPIENLLSANPHVEQVCVVG 427

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 72.0 bits (176), Expect = 6e-14
 Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 15/137 (10%)

Query: 184 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 243
           W   GD+GS+D+ G ++L  R++  I SGG N+YP+E E  L  HP +  + V+G+ +  
Sbjct: 380 WTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPE 439

Query: 244 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWR 303
           + E V A ++L E  + S+             L+ E++  + R + +  +KAPR  V + 
Sbjct: 440 MGEQVKAVIQLVEGIRGSDE------------LARELI-DYTRSR-IAHYKAPR-SVEFV 484

Query: 304 KPFPLTSTGKIRRDEVR 320
              P T TGK+ +  +R
Sbjct: 485 DELPRTPTGKLVKGLLR 501

Length = 501

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 27/222 (12%)

Query: 58  SVKKILNGGGGLPSELMKEATNSFPKAKL-----ISAYGMTETSSSLTFMTLYDP----- 107
           SV+ I NG   + ++L +E         L        YG+ E + +++F    +P     
Sbjct: 229 SVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVC 288

Query: 108 ----TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-----GSSHVGRIL 158
                L+   ++ +    + P +      V VG P    E+++  D         +G I 
Sbjct: 289 LDRNHLKVGVKIIE----IDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQ 344

Query: 159 TRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYP 218
            +G +V   Y++   A     T + WL TGD+G + + G + + GR    I   G+N YP
Sbjct: 345 IKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLRN-GRLVITGRAKDIIIVNGQNYYP 403

Query: 219 EEVEAVLLQHPGI-IG-IVVVGIANARL-TEMVVACVRLRES 257
            ++E V  Q  GI +G +   G+ + +  +E VV  V  R+S
Sbjct: 404 HDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQS 445

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 68/265 (25%), Positives = 113/265 (42%), Gaps = 40/265 (15%)

Query: 3   MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 62
           ++M GA      K +  S  E ++   VT    VP +   L  L  ++K       +K +
Sbjct: 248 LVMPGA------KLDGASVYELLDTEKVTFTAGVPTVW--LMLLQYMEKEGLKLPHLKMV 299

Query: 63  LNGGGGLPSELMKEATNSFPK--AKLISAYGMTETSSSLTFMTLYDPTLETPG--QLPQA 118
           + GG  +P  ++K    +F     ++  A+GMTE S   T   L  P  + PG  +L   
Sbjct: 300 VCGGSAMPRSMIK----AFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARL--- 352

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-------GRILTRGAHVMLRYWDQ 171
                   V Q QG     P   VE+K+  D    +       GR+  RG  V   Y   
Sbjct: 353 -------DVLQKQG----YPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAY--- 398

Query: 172 FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
           +     +   + + DTGD+ +ID  G + +  R    IKSGGE +   ++E + + HP +
Sbjct: 399 YRVDGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKV 458

Query: 232 IGIVVVGIANARLTEMVVACVRLRE 256
               V+G+ + +  E  +  V+L+ 
Sbjct: 459 AEAAVIGVYHPKWDERPLLIVQLKP 483

Length = 542

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 29/185 (15%)

Query: 136 GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD 195
           G P P  E          VGR++TRG +    Y+       S      +  +GD+ SID 
Sbjct: 372 GNPLPQGE----------VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDP 421

Query: 196 GGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLR 255
            G + +VGR   +I  GGE +  EE+E +LL+HP +I   +V + +  + E   A + ++
Sbjct: 422 DGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVK 481

Query: 256 ESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315
           E                   L +  LR+  RE+ +  FK P          PLT+ GK+ 
Sbjct: 482 EP------------------LKAVQLRRFLREQGIAEFKLPDRVECV-DSLPLTAVGKVD 522

Query: 316 RDEVR 320
           + ++R
Sbjct: 523 KKQLR 527

Length = 536

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 15/137 (10%)

Query: 184 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANAR 243
           W   GDIG +D+ G ++L  R    I SGG N+YP+E E +L+ HP +    V G+ N  
Sbjct: 383 WSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNED 442

Query: 244 LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWR 303
           L E V A V+            D       L   +  L   CR+  L+  K PR  + + 
Sbjct: 443 LGEEVKAVVQP----------VDGVDPGPAL---AAELIAFCRQ-RLSRQKCPRS-IDFE 487

Query: 304 KPFPLTSTGKIRRDEVR 320
              P   TGK+ +  +R
Sbjct: 488 DELPRLPTGKLYKRLLR 504

Length = 511

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 70.4 bits (172), Expect = 2e-13
 Identities = 76/308 (24%), Positives = 125/308 (40%), Gaps = 48/308 (15%)

Query: 16  FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMK 75
           F++++AL     H   +   VP ++A +  L    +       ++ +++ G  L   L +
Sbjct: 251 FDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQ 310

Query: 76  EATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCV 135
              +++    L + YG TE              L TP  L  A     P +V +P   C 
Sbjct: 311 RFMDTYGDI-LYNGYGSTEVGIG---------ALATPADLRDA-----PETVGKPVAGC- 354

Query: 136 GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLD----TGDIG 191
             P   ++      G    GRI   G     RY D          G+  +D    TGD+G
Sbjct: 355 --PVRILDRNNRPVGPRVTGRIFVGGELAGTRYTD--------GGGKAVVDGMTSTGDMG 404

Query: 192 SIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVAC 251
            +D+ G +++VGR +  I SGGENVYP  VE  L  HP +    V+G+ + R    + A 
Sbjct: 405 YLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAF 464

Query: 252 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTST 311
           V L                     + +  LR + +++ ++ F+ PR   +     P   T
Sbjct: 465 VVLH-------PGSG---------VDAAQLRDYLKDR-VSRFEQPRDINI-VSSIPRNPT 506

Query: 312 GKIRRDEV 319
           GK+ R E+
Sbjct: 507 GKVLRKEL 514

Length = 516

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 27/191 (14%)

Query: 136 GKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVSTGEV---WLDT 187
           G P P   + V  D    +     G++    A   L ++  +   P  +   +   W  T
Sbjct: 262 GLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVT 321

Query: 188 GDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEM 247
           GD+   D+ G  W +GR +  I S G  + P +VE+ LL+HP +    VVG+ +    E+
Sbjct: 322 GDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEI 381

Query: 248 VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRL--FVLWRKP 305
           V A V L+E +  S+          EL   +E L+   + K L+    PR   FV     
Sbjct: 382 VKAFVVLKEGYAGSD----------EL---AEELQLFVK-KRLSAHAYPREVEFV---PA 424

Query: 306 FPLTSTGKIRR 316
            P T +GKI+R
Sbjct: 425 LPKTPSGKIQR 435

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 38/250 (15%)

Query: 4   LMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 62
           L+ G   VF       K  +E +++  VT L + P     +  L   KK      S++ +
Sbjct: 247 LLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI--LKTAKKQESCLPSLRFV 304

Query: 63  LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
           + GG      L +EA  +FP  +L   YG TE S  +T  T+  P  E+           
Sbjct: 305 VIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHES----------- 353

Query: 123 TPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQFLAKP 176
                      CVG P   +++ + S+       S   G +LTRG  +   Y  +   + 
Sbjct: 354 -----------CVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQG 402

Query: 177 SVS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH------P 229
            V   GE W  TGD+G +D  G ++L GR +  +K G E V  E +E++L++        
Sbjct: 403 FVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAAD 462

Query: 230 GIIGIVVVGI 239
               +VV G+
Sbjct: 463 HAGPLVVCGL 472

Length = 539

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 69.4 bits (169), Expect = 4e-13
 Identities = 64/307 (20%), Positives = 105/307 (34%), Gaps = 41/307 (13%)

Query: 22  LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKK-------ILNGGGGLPSELM 74
           +E  +   VT    VP +   LA            +S          ++ GG   P  L+
Sbjct: 237 VELFDGEGVTFTAGVPTVWLALAD---------YLESTGHRLKTLRRLVVGGSAAPRSLI 287

Query: 75  KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVC 134
                     ++   YG+TETS  +         LE+  +  +               + 
Sbjct: 288 A--RFERMGVEVRQGYGLTETSP-VVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR 344

Query: 135 VGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSID 194
           V          V  DG + +G +  +G  +   Y+    A  S  T + +  TGDI   D
Sbjct: 345 VADEE---GRPVPKDGKA-LGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD 400

Query: 195 DGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRL 254
           + G V +  R    IKSGGE +   ++E  L+ HP +    VV I + +  E  +A V  
Sbjct: 401 EEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVP 460

Query: 255 RESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI 314
           R                +EL        +H  +             ++ +  P TS GK 
Sbjct: 461 RGE----------KPTPEELN-------EHLLKA-GFAKWQLPDAYVFAEEIPRTSAGKF 502

Query: 315 RRDEVRR 321
            +  +R 
Sbjct: 503 LKRALRE 509

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 86/338 (25%), Positives = 143/338 (42%), Gaps = 73/338 (21%)

Query: 7   GACHVFI---PKFESKSALEAVEQHCVTSLITVPAI--MADLATLIRVKKTWKGRDSVKK 61
           GAC VF+   P+F+ K  L+ + ++ +T+  + P +  M     L   K       S++ 
Sbjct: 242 GAC-VFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLTSYK-----FKSLRH 295

Query: 62  ILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN 121
            + GG  L  E++++         L   YG TET   L         ++ PG +      
Sbjct: 296 CVTGGEPLNPEVLEQWKAQ-TGLDLYEGYGQTETG--LICANFKGMKIK-PGSM------ 345

Query: 122 VTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG--AHVMLR--------YWDQ 171
                         GK +P  ++++  D     G +L  G    + +R         +  
Sbjct: 346 --------------GKASPPYDVQIIDDN----GNVLPPGTEGDIGIRVKPTRPFCLFSC 387

Query: 172 FLAKP----SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
           ++  P    +   G+ ++ TGD G +D+ G  W VGR +  I S G  + P EVE+ L++
Sbjct: 388 YVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIE 446

Query: 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 287
           HP ++   VV   +    E+V A V L              S + E L     L++H   
Sbjct: 447 HPAVVESAVVSSPDPIRGEVVKAFVVL---------APQFLSHDPEQLTKE--LQEHV-- 493

Query: 288 KNLTG-FKAPRL--FVLWRKPFPLTSTGKIRRDEVRRE 322
           K++T  +K PR   FV      P T TGKI+R+E+R +
Sbjct: 494 KSVTAPYKYPRKVEFVQ---ELPKTITGKIKRNELRDK 528

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 65/255 (25%), Positives = 91/255 (35%), Gaps = 55/255 (21%)

Query: 72  ELMKEATNSFPKAK----LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSV 127
           E + EAT    + K    ++  YG TE S                   P    N TP   
Sbjct: 269 EKLPEATRELFEEKFGIRILEGYGATECS-------------------PVISVN-TPM-- 306

Query: 128 HQPQGVCVGKPAPHVELKV------CSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST- 180
               G  VG+P P +E+++              G +L RG +VM  Y +       V   
Sbjct: 307 GNKPG-TVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVL 365

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG-IVVVGI 239
           G+ W DTGDIG ID+ G + +VGR     K GGE V    VE +L +          V +
Sbjct: 366 GDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEV 425

Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 299
            + +  E +V           +  + D              L    RE  L     PR  
Sbjct: 426 PDEKKGEKIVLLT--------TTEDLDPEE-----------LNAILREAGLPNLAVPRK- 465

Query: 300 VLWRKPFPLTSTGKI 314
           +L     PL  +GK 
Sbjct: 466 ILHVDEIPLLGSGKT 480

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 29/140 (20%)

Query: 184 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP-----GIIGI--VV 236
           W  +GD   +D+ G  W  GR +  IK+ GE V P EVE+ L++HP     G+IG    V
Sbjct: 433 WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPV 492

Query: 237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP 296
            G       E++ A V LR  ++ SE          EL      +R   ++  L    AP
Sbjct: 493 RG-------EIIKAFVALRPGYEPSE----------ELKEE---IRGFVKKG-LGAHAAP 531

Query: 297 RLFVLWRKPFPLTSTGKIRR 316
           R    ++   P T +GKI R
Sbjct: 532 REIE-FKDKLPKTRSGKIMR 550

Length = 570

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 44/223 (19%)

Query: 64  NGGGGLPSELMKEATNSF------PKAKLISAYGMTETSSSLTFMTL------------- 104
            G   +  +++ +   +F       KA + S YG+ E + +++F  L             
Sbjct: 306 IGADMIRPDVLHQFAEAFAPAGFDDKAFMPS-YGLAEATLAVSFSPLGSGIVVEEVDRDR 364

Query: 105 --YDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----HVGRI 157
             Y      PG   +               V  GK  P  E+++ ++         VG I
Sbjct: 365 LEYQGKAVAPGAETRRVRTF----------VNCGKALPGHEIEIRNEAGMPLPERVVGHI 414

Query: 158 LTRGAHVMLRYW-DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENV 216
             RG  +M  Y+ D+       + G  WLDTGD+G + DG  +++ GR    I   G N+
Sbjct: 415 CVRGPSLMSGYFRDEESQDVLAADG--WLDTGDLGYLLDG-YLYITGRAKDLIIINGRNI 471

Query: 217 YPEEVEAVLLQHPGIIG--IVVVGIANARLTEMVVACVRLRES 257
           +P+++E +  Q P +         IA     E +V  V+ R S
Sbjct: 472 WPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRIS 513

Length = 579

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 81  FPKAKLISAYGMTETSSSLTFMTLYDP-TLETP-GQLPQAFGNVTPNSV-HQPQGVCVGK 137
                ++ AYGM E + +++F        ++     L  A     P +  +  +   +G 
Sbjct: 305 LRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGP 364

Query: 138 PAPHVELKVCSD-----GSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGS 192
           P P +E++V  +         VG I  RG  V   Y       P+      WLDTGD+G 
Sbjct: 365 PLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADG-WLDTGDLGY 423

Query: 193 IDDGGNVWLVGRRNGRIKSGGENVYPEEVE 222
           + + G V + GR    I   G N+YP ++E
Sbjct: 424 LTEEGEVVVCGRVKDVIIMAGRNIYPTDIE 453

Length = 545

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 30/202 (14%)

Query: 40  MADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSL 99
           +A      +V+K   G D  +K   G   +  E   E   S     ++  YGM+ETS   
Sbjct: 302 LAKKLVFKKVRKAL-GLDRCQKFFTGAAPISRET-LEFFLSL-NIPIMELYGMSETSGPH 358

Query: 100 TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILT 159
           T               PQ +  ++            GK  P  E K+ +  +  +G I  
Sbjct: 359 TV------------SNPQNYRLLS-----------CGKALPGCETKIHNPDADGIGEICI 395

Query: 160 RGAHVMLRYW-DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVY 217
            G HV + Y   +   + ++   + WL +GD+G +DD G +++ GR    I  +GGENV 
Sbjct: 396 WGRHVFMGYLNMEEKTEEAIDE-DGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVP 454

Query: 218 PEEVE-AVLLQHPGIIGIVVVG 238
           P  +E AV  + P I   ++VG
Sbjct: 455 PVPIEEAVKKELPIISNAMLVG 476

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 76/324 (23%), Positives = 131/324 (40%), Gaps = 39/324 (12%)

Query: 4    LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
            L+ GA  V  P    +     ++ +E+  VT+L  VP++   L  L+++ +  +   S++
Sbjct: 1781 LINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSM---LQQLLQMDEQVEHPLSLR 1837

Query: 61   KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP--QA 118
            +++ GG  L  E ++      P   L + YG TET+  +T  T     LE    +P  Q 
Sbjct: 1838 RVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQP 1897

Query: 119  FGN----VTPNSVH-QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYW-DQF 172
              N    +   S++  P GV         EL +   G       L RG         ++F
Sbjct: 1898 IANLSTYILDASLNPVPIGVAG-------ELYLGGVG-------LARGYLNRPALTAERF 1943

Query: 173  LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            +A P  + G     TGD+      G +  +GR + ++K  G  +   E+EA L +  G+ 
Sbjct: 1944 VADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVR 2003

Query: 233  GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              VV+    A   ++V   V         + +  Q +          +L+ H +   L  
Sbjct: 2004 EAVVIAQDGANGKQLVAYVVPTDPG--LVDDDEAQVA-------LRAILKNHLKAS-LPE 2053

Query: 293  FKAPRLFVLWRKPFPLTSTGKIRR 316
            +  P   V   +  PLT  GK+ R
Sbjct: 2054 YMVPAHLVFLAR-MPLTPNGKLDR 2076

Length = 3956

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 74/328 (22%), Positives = 114/328 (34%), Gaps = 64/328 (19%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLI-TVPAIMADLATLIRVKKTWKGRDSVKKI 62
           L  G   V     ++  AL  +      +LI TVP+   +L     +        SV+ +
Sbjct: 168 LSTGGRVVLA---DNALALPDLPAKAEVTLINTVPSAARELLRHDALPS------SVRTV 218

Query: 63  LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
              G  LP EL++         ++ + YG +E ++  T+  +      TP          
Sbjct: 219 NLAGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGASRTPS--------- 269

Query: 123 TPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYWD------ 170
                       +G+P    +  V  D           G +   GA V   Y        
Sbjct: 270 ------------IGRPLAGTQAYV-LDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTA 316

Query: 171 -QFLAKP-SVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 228
            +FL  P + S GE    TGD+      G +  +GR + ++K  G  +   E+EA L   
Sbjct: 317 ERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSI 376

Query: 229 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 288
           PG+   VVV I +A     +VA +        +  +              E LR      
Sbjct: 377 PGVAEAVVVAIGDAAGDRQLVAYIVADPG---AAIDI-------------EDLRARLA-T 419

Query: 289 NLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
            L  +  P  FV      PLT  GKI R
Sbjct: 420 RLPAYMVPSRFV-RLDALPLTPNGKIDR 446

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 72/331 (21%), Positives = 117/331 (35%), Gaps = 63/331 (19%)

Query: 4    LMVGACHVFIPK--FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SV 59
            L+ G C V      ++ +   +A+  H ++     PA +   A      +   G D  S+
Sbjct: 3300 LICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFA------EDAGGADCASL 3353

Query: 60   KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
               + GG  +P    ++         L + YG TE             TL   G      
Sbjct: 3354 DIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAV--------VTVTLWKCGG----- 3400

Query: 120  GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYW---- 169
                 ++V +     +G+P     + V  DG  +       G +   G  +   Y     
Sbjct: 3401 -----DAVCEAPYAPIGRPVAGRSIYVL-DGQLNPVPVGVAGELYIGGVGLARGYHQRPS 3454

Query: 170  ---DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226
               ++F+A P   +G     TGD+      G +  +GR + ++K  G  +   E+EA LL
Sbjct: 3455 LTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLL 3514

Query: 227  QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCR 286
            QHP +   VV+    A   ++V   V       W                  E LR H  
Sbjct: 3515 QHPSVREAVVLARDGAGGKQLVAYVVPADPQGDW-----------------RETLRDHLA 3557

Query: 287  EKNLTGFKAP-RLFVLWRKPFPLTSTGKIRR 316
              +L  +  P +L VL     PL   GK+ R
Sbjct: 3558 -ASLPDYMVPAQLLVLAA--MPLGPNGKVDR 3585

Length = 3956

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 35/254 (13%)

Query: 5   MVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           + GA  V   P  + KS  E +E   VT    VP +   L  L  +++      ++++ +
Sbjct: 242 LTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVW--LGLLNHMREAGLRFSTLRRTV 299

Query: 64  NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 123
            GG   P  +++   + +   ++I A+GMTE S   T   L     + P           
Sbjct: 300 IGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLD--------E 350

Query: 124 PNSVHQPQGVCV-----------GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQF 172
              + + QG  +           G+  P        DG +  G +  RG  V+ RY+   
Sbjct: 351 QRKLLEKQGRVIYGVDMKIVGDDGRELPW-------DGKAF-GDLQVRGPWVIDRYFRG- 401

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A P V     W  TGD+ +ID  G + +  R    IKSGGE +   ++E V + HP + 
Sbjct: 402 DASPLVDG---WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVA 458

Query: 233 GIVVVGIANARLTE 246
               +  A+ +  E
Sbjct: 459 EAACIACAHPKWDE 472

Length = 539

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 74/325 (22%), Positives = 117/325 (36%), Gaps = 56/325 (17%)

Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           L+ GA +V  P+F +     AV +H  T    + A+++     I + +  +  D   ++ 
Sbjct: 243 LLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVS-----ILLSQPARESDRAHRVR 297

Query: 64  NG-GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
              G G+P+ L       F    L+  YG TET+                          
Sbjct: 298 VALGPGVPAALHAAFRERFGVD-LLDGYGSTETNF--------------------VIAVT 336

Query: 123 TPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGA--HVMLRYWDQFLAK 175
                   +   +G+ AP  E +V  +    +     G +L R          +     K
Sbjct: 337 HG----SQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEK 392

Query: 176 PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235
              +   +W  TGD    D  G    V R    I+  GEN+   EVE VLL HP +    
Sbjct: 393 TVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAA 452

Query: 236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKA 295
           V  + +    + V+A V LR+                   L    L +HC E  L  F  
Sbjct: 453 VFPVPSELGEDEVMAAVVLRDGTA----------------LEPVALVRHC-EPRLAYFAV 495

Query: 296 PRLFVLWRKPFPLTSTGKIRRDEVR 320
           PR +V +    P T  GK+++  +R
Sbjct: 496 PR-YVEFVAALPKTENGKVQKFVLR 519

Length = 542

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 57/258 (22%)

Query: 81  FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAP 140
           F       +YG+ E++ ++T        +  PG   +     T +     +   +G P P
Sbjct: 301 FDAGAAAPSYGLAESTCAVT--------VPVPGIGLRVDEVTTDDGSGARRHAVLGNPIP 352

Query: 141 HVELKV-CSDGSS-----HVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSID 194
            +E+++   DG++      +G I  RGA +M  Y    L +  +   + W  TGD+G + 
Sbjct: 353 GMEVRISPGDGAAGVAGREIGEIEIRGASMMSGY----LGQAPIDPDD-WFPTGDLGYLV 407

Query: 195 DGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII--GIVVVGIANARLTEMVVACV 252
           DGG V + GR    I   G N++P E+E V  Q  G+    +V VG         +V   
Sbjct: 408 DGGLV-VCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAA 466

Query: 253 RLRESWQWSESNCDQSSKNKELL---------LSSEVLRQHCREKNLTGFKAPRLFVLWR 303
             R          D++    E++         + S+V+           F AP       
Sbjct: 467 EFRGP--------DEAGARSEVVQRVASECGVVPSDVV-----------FVAP------- 500

Query: 304 KPFPLTSTGKIRRDEVRR 321
              P TS+GK+RR  V+R
Sbjct: 501 GSLPRTSSGKLRRLAVKR 518

Length = 525

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 53/187 (28%), Positives = 74/187 (39%), Gaps = 28/187 (14%)

Query: 146 VCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIG-SIDDGGNVWLVGR 204
           +  DG S  G I  R   +M  Y D   A     T + +  TGD+G +  DG  V+   R
Sbjct: 371 LLPDGES--GEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVY-QTR 427

Query: 205 RNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESN 264
               ++ GG  V P E+E  L   PG+    VVG      T   VA V   +        
Sbjct: 428 MGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTV-PVAFVIPTDGAS----- 481

Query: 265 CDQSSKNKELLLSSEVLRQHCREKNLTGFKAP-RLFVLWRKPFPLTSTG---KIRRDEVR 320
                           L   CRE  L GFK P R+ V+  + FP+T +    KI++  +R
Sbjct: 482 -----------PDEAGLMAACREA-LAGFKVPARVQVV--EAFPVTESANGAKIQKHRLR 527

Query: 321 REVMSHL 327
               + L
Sbjct: 528 EMAQARL 534

Length = 540

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 21/190 (11%)

Query: 136 GKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDI 190
           GKP P   L++  DG   V     G +L  G      YW+          GE W  +GD 
Sbjct: 333 GKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGE-WTRSGDK 391

Query: 191 GSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVA 250
              +D G+    GR +  +K  G  V P E+E+ L+QHP ++   VVG+ +        A
Sbjct: 392 YVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKA 451

Query: 251 CVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS 310
            + LR                         L++H +++ L  +K PR ++++    P T+
Sbjct: 452 FIVLRPGQDIDT-------------ALETELKEHVKDR-LAPYKYPR-WIVFVDDLPKTA 496

Query: 311 TGKIRRDEVR 320
           TGKI+R ++R
Sbjct: 497 TGKIQRFKLR 506

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 65/324 (20%), Positives = 112/324 (34%), Gaps = 58/324 (17%)

Query: 4    LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
            LM GA  V     + +     VE      +  + A  + L   +  +   +    +K+I+
Sbjct: 3259 LMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTS-LKRIV 3317

Query: 64   NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 123
             GG  LP++L ++    F    L + YG TE + ++T     +        +P       
Sbjct: 3318 CGGEALPADLQQQV---FAGLPLYNLYGPTEATITVTHWQCVEEG---KDAVP------- 3364

Query: 124  PNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----------GRILTRGAHVMLRYWDQF 172
                       +G+P  +    +       V           G  L RG H       + 
Sbjct: 3365 -----------IGRPIANRACYILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAER 3413

Query: 173  LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
                    GE    TGD+      G +  +GR + ++K  G  +   E+EA LL+HP + 
Sbjct: 3414 FVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVR 3473

Query: 233  GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              VV+ +   +L   VV         +    +              E L+ H +   L  
Sbjct: 3474 EAVVLAVDGRQLVAYVVP--------EDEAGDL------------REALKAHLKAS-LPE 3512

Query: 293  FKAPRLFVLWRKPFPLTSTGKIRR 316
            +  P   +   +  PLT  GK+ R
Sbjct: 3513 YMVPAHLLFLER-MPLTPNGKLDR 3535

Length = 5163

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 73/339 (21%), Positives = 132/339 (38%), Gaps = 83/339 (24%)

Query: 4   LMVGACHVFIPKFESKSA--LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SV 59
           L+ G   + IP  E +     E + +  VT     P+++A               D  S+
Sbjct: 162 LLAGGT-LVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLA----------LLDPEDVPSL 210

Query: 60  KKILNGGGGLPSELMKEATNSF--PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
           + ++ GG     E   +A         +L++ YG TE + + T  +   P          
Sbjct: 211 RTLILGG-----EACPQALVDRWSKPRRLLNTYGPTEATVTAT-ASRLTPG--------- 255

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYWDQ 171
                      +P  V +G+P P+    V             VG +   G  V   Y   
Sbjct: 256 -----------KP--VNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGY--- 299

Query: 172 FLAKPSVSTGEV------WLD--------TGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 217
            L +P   T E       WL+        TGD+    + G++  +GR++ ++K  G+ + 
Sbjct: 300 -LNRP-ELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIE 357

Query: 218 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 277
             E+EAVL   PG++   VV + +    + +VA + +           D ++  +   + 
Sbjct: 358 LGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAV-----------DGAAGGEPADVD 406

Query: 278 SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
             +LR   RE+ L  +  P ++V   +  PLT++GK+ R
Sbjct: 407 IALLRSALRER-LPSYMVPSVYVPLDE-LPLTASGKVDR 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 73/318 (22%), Positives = 119/318 (37%), Gaps = 32/318 (10%)

Query: 4    LMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
            L  GA    +P     ++++    +    VT L  VP+ +  L    RV          +
Sbjct: 719  LASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA----LPRPQR 774

Query: 61   KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ-LPQAF 119
             ++ GG  L  +L+       P A+LI+ YG TET+  ++   L D   +     + Q  
Sbjct: 775  ALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPL 834

Query: 120  GNVTPNSV-HQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSV 178
             N+    + H    V VG      EL +   G +       R A    R    F+  P  
Sbjct: 835  ANLGLYILDHYLNPVPVGVVG---ELYIGGAGLAR--GYHRRPALTAER----FVPDPFG 885

Query: 179  STGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVG 238
            + G     TGD+      G +  +GR + ++K  G  +   E+EA LL  PG+   VV+ 
Sbjct: 886  ADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLA 945

Query: 239  IANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRL 298
                   ++V   V                +   E   + + L+   R+  L  +  P  
Sbjct: 946  QPGDAGLQLVAYLVP------------AAVADGAEHQATRDELKAQLRQ-VLPDYMVPAH 992

Query: 299  FVLWRKPFPLTSTGKIRR 316
             +L     PLT  GK+ R
Sbjct: 993  LLLLDS-LPLTPNGKLDR 1009

Length = 3956

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 14/176 (7%)

Query: 84  AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPN-SVHQPQGVCVGKPAPHV 142
            ++   YG +E +  +            PG  P + G   P  +++ P+ +     A   
Sbjct: 289 CQVEDGYGSSEGAVIVV---------REPGTPPGSIGRGAPGVAIYNPETLTECAVARFD 339

Query: 143 ELKVCSDGSSHVGRIL-TRGAHVMLRYW-DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVW 200
                 +    +G ++ T GA     Y+ +       +  G  W  +GD+   D  G ++
Sbjct: 340 AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYW--SGDLAYRDADGWIY 397

Query: 201 LVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 256
             GR    ++  GEN+    +E +LL+HP I  + V  + + R+ + V+A + LR+
Sbjct: 398 FAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRD 453

Length = 540

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 65/309 (21%)

Query: 40  MADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSL 99
           MAD     +VK    GR  ++ +++GG  L +E+ +E       A ++  YG+TET    
Sbjct: 368 MADFLAFRKVKAKLGGR--LRLLISGGAPLSTEI-EEFLRVTSCAFVVQGYGLTET---- 420

Query: 100 TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVC----VGKPAPHVELKVCSD------ 149
                                 + P ++  P  +C    VG PA + EL++         
Sbjct: 421 ----------------------LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYD 458

Query: 150 --GSSHVGRILTRGAHVMLRYW-DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRN 206
             G    G I  RG  +   Y+ +  L +  +  G  W  TGDIG I   G + ++ R+ 
Sbjct: 459 PLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDG--WFHTGDIGEILPNGVLKIIDRKK 516

Query: 207 GRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE--SWQWSES 263
             IK S GE V  E +E V  Q+P +  I V G +      M+VA V   E  + +W++ 
Sbjct: 517 NLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKD 573

Query: 264 NCDQSSKNKELLLSSEVLRQH-------CREKN-LTGFKAPRLFVLWRKPFPL-----TS 310
           N    + + E L S   L++H         EKN L GF+  +  +L  KPF +     T+
Sbjct: 574 N--GFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTA 631

Query: 311 TGKIRRDEV 319
           T K RR+ +
Sbjct: 632 TLKKRRNNL 640

Length = 660

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 178 VSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 237
           V  G+  + T D+G   + G +  +GR +  I   G NVYP EVE V+L+ PG+   VV 
Sbjct: 286 VKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVY 345

Query: 238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR 297
              +    E V A V   E                   +    LR+ C  ++L  ++ P 
Sbjct: 346 RGKDPVAGERVKAKVISHEE------------------IDPVQLREWCI-QHLAPYQVPH 386

Query: 298 LFVLWRKPFPLTSTGKIRRDEV 319
                 +  P  + GK+ R  +
Sbjct: 387 EIESVTE-IPKNANGKVSRKLL 407

Length = 414

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 62/264 (23%), Positives = 106/264 (40%), Gaps = 45/264 (17%)

Query: 4   LMVGACHVFIPKFESKSALEAVE---QHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           LM GA  V     + +   + VE   +  V +L  VP+++        V        S++
Sbjct: 718 LMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVASC----TSLR 773

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I+  G  LP++  ++     P+A L + YG TE +  +T  T  +   E    +P    
Sbjct: 774 RIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVE---EGGDSVP---- 826

Query: 121 NVTPNSVHQPQGVCVGKPAPHV-------ELKVCSDGSSH----VGRILTRGAH---VML 166
                         +G+P  ++        L+    G        GR L RG H    + 
Sbjct: 827 --------------IGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLT 872

Query: 167 RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL 226
              ++F+  P V+ GE    TGD+      G +   GR + ++K  G  +   E+EA LL
Sbjct: 873 A--ERFVPSPFVA-GERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLL 929

Query: 227 QHPGIIGIVVVGIANARLTEMVVA 250
           +HP +    V+ +   +L   VV 
Sbjct: 930 EHPWVREAAVLAVDGKQLVGYVVL 953

Length = 5163

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 19/143 (13%)

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
           G+ + +TGD+   D  G  + V R     +  GENV   EVE VL +HPG+    V G+ 
Sbjct: 316 GDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVE 375

Query: 241 NARLT-EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 299
                    +A + L                        +    H  ++ L  +  P LF
Sbjct: 376 VPGTEGRAGMAALTLAPGAA----------------FDPQAFAAHL-DEQLPAYARP-LF 417

Query: 300 VLWRKPFPLTSTGKIRRDEVRRE 322
           +  +     T T K ++ ++R+E
Sbjct: 418 LRVQAAMETTGTFKYQKTDLRKE 440

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 31/236 (13%)

Query: 24   AVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK 83
             +E+H VT L   P  +  LA             +V+    GG  +P+  ++ A  +   
Sbjct: 2231 EMERHGVTILDFPPVYLQQLAEHAERDGR---PPAVRVYCFGGEAVPAASLRLAWEALRP 2287

Query: 84   AKLISAYGMTETSSSLTFMTLYDPTLETPG-QLPQAFGNVTPNSVHQPQGVCVGKPAPHV 142
              L + YG TE         +  P L     Q P     V       P G  +G    ++
Sbjct: 2288 VYLFNGYGPTEA--------VVTPLLWKCRPQDPCGAAYV-------PIGRALGNRRAYI 2332

Query: 143  ---ELKVCSDGSSHVGRILTRGAHVMLRYWDQ-------FLAKPSVSTGEVWLDTGDIGS 192
               +L + + G    G +   G  +   Y ++       F+  P  ++GE    TGD+  
Sbjct: 2333 LDADLNLLAPGM--AGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLAR 2390

Query: 193  IDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMV 248
                G V  +GR + ++K  G  +   E+EA L  HP +   VVV    A   ++V
Sbjct: 2391 YRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLV 2446

Length = 5163

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 70/269 (26%), Positives = 107/269 (39%), Gaps = 52/269 (19%)

Query: 69  LPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVH 128
           LP +  K     FPKA + + YG TE + ++T + +    L+   +LP            
Sbjct: 270 LPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLP------------ 317

Query: 129 QPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVSTGEV 183
                 +G   P + L +  +    +     G I+  G  V   Y    L  P   T E 
Sbjct: 318 ------IGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGY----LNNPE-KTAEA 366

Query: 184 WLD--------TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV 235
           +          TGD G+I D G ++  GR + +IK  G  +  E++E  L Q   I   V
Sbjct: 367 FFSHEGQPAYRTGDAGTITD-GQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAV 425

Query: 236 VVGIANARLT-EMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 294
           VV   N     E ++A +         E    ++ K KEL            +K+L  + 
Sbjct: 426 VVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIK-KEL------------KKSLPAYM 472

Query: 295 APRLFVLWRKPFPLTSTGKIRRDEVRREV 323
            PR F+ +R   PLT+ GKI R  +  EV
Sbjct: 473 IPRKFI-YRDQLPLTANGKIDRKALAEEV 500

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 68/310 (21%), Positives = 120/310 (38%), Gaps = 55/310 (17%)

Query: 36  VPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTET 95
           VP +   L  ++   K    R S+++I  GG  +P  L+K     +    ++  +GMTET
Sbjct: 279 VPTLWIQL--MVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTET 335

Query: 96  SSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG---SS 152
           S            + T  + P         +    QG     PA  +E ++ +DG    S
Sbjct: 336 S-----------PVGTVARPPSGVSGEARWAYRVSQGRF---PAS-LEYRIVNDGQVMES 380

Query: 153 H---VGRILTRGAHVMLRYW----------------DQFLAKPSVSTGEVWLDTGDIGSI 193
                G I  RG  V   Y+                +         T + WL TGD+GS+
Sbjct: 381 TDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSV 440

Query: 194 DDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVR 253
              G + +  R    I+SGGE +Y  ++E  ++  P ++   V+G  + +  E  +A   
Sbjct: 441 TRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTV 500

Query: 254 LRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGK 313
           L    + +               ++E LR   R++ L  +  P  +  +      TS GK
Sbjct: 501 LAPGIEPTRE-------------TAERLRDQLRDR-LPNWMLPEYWT-FVDEIDKTSVGK 545

Query: 314 IRRDEVRREV 323
             + ++R+ +
Sbjct: 546 FDKKDLRQHL 555

Length = 576

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 71/336 (21%), Positives = 115/336 (34%), Gaps = 58/336 (17%)

Query: 1    MAMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD 57
               L+ GA  V I     ++ +     + +H VT L+  P  +  LA             
Sbjct: 4754 YHPLINGAS-VVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEPP--- 4809

Query: 58   SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
            S++    GG  +       A  +     L + YG TET+ ++      D        +P 
Sbjct: 4810 SLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMP- 4868

Query: 118  AFGNVTPN-SVH------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYW- 169
              G    N S +       P  V V       EL +  +G       + RG      Y  
Sbjct: 4869 -IGTPLGNRSGYVLDGQLNPLPVGVAG-----ELYLGGEG-------VARG------YLE 4909

Query: 170  ------DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 223
                  ++F+  P  + G     TGD+      G +  +GR + ++K  G  +   E+EA
Sbjct: 4910 RPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEA 4969

Query: 224  VLLQHPGIIGIVVV---GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEV 280
             L +HP +   VV+   G    +L   VV           +++                 
Sbjct: 4970 RLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALADADEAQAELRDE------------ 5017

Query: 281  LRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
            L+   RE  L  +  P   V   +  PLT  GK+ R
Sbjct: 5018 LKAALRE-RLPEYMVPAHLVFLAR-MPLTPNGKLDR 5051

Length = 5163

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 77/269 (28%)

Query: 81  FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAP 140
           FP A + + YG TE + ++T + + D  L+   +LP                  +G   P
Sbjct: 284 FPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLP------------------IGYAKP 325

Query: 141 HVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLAKPSVSTG---------EVWLD 186
              L +  +  + +     G I+  G              PSVS G         E +  
Sbjct: 326 DSPLLIIDEEGTKLPDGEQGEIVISG--------------PSVSKGYLNNPEKTAEAFFT 371

Query: 187 --------TGDIGSIDDGGNVWLV-GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV 237
                   TGD G ++DG  +    GR + +IK  G  +  EE+E  L Q   +   VVV
Sbjct: 372 FDGQPAYHTGDAGYLEDG--LLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVV 429

Query: 238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE---KNLTGFK 294
                   + ++A V  +E               +E  L+  +     ++   + L  + 
Sbjct: 430 PYNKDHKVQYLIAYVVPKE-----------EDFEREFELTKAI-----KKELKERLMEYM 473

Query: 295 APRLFVLWRKPFPLTSTGKIRRDEVRREV 323
            PR F+ +R   PLT  GKI R  +  EV
Sbjct: 474 IPRKFI-YRDSLPLTPNGKIDRKALIEEV 501

Length = 503

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 30/233 (12%)

Query: 22   LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81
             E V+Q+ VT+L  VP     L  L   +       S++++ +GG  LP+EL        
Sbjct: 1357 AELVQQYGVTTLHFVPP----LLQLFIDEPLAAACTSLRRLFSGGEALPAELRNRVLQRL 1412

Query: 82   PKAKLISAYGMTETSSSLT-FMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVC------ 134
            P+ +L + YG TET+ ++T +    +    +P   P   GNV          +C      
Sbjct: 1413 PQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRP--LGNV----------LCRVLDAE 1460

Query: 135  VGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSID 194
            +    P V  ++C  G+      L R A    R    F+  P    G     TGD    +
Sbjct: 1461 LNLLPPGVAGELCIGGAGLARGYLGRPALTAER----FVPDPLGEDGARLYRTGDRARWN 1516

Query: 195  DGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV---GIANARL 244
              G +  +GR + ++K  G  V PEE++A LL  PG+    V+   G A A+L
Sbjct: 1517 ADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQL 1569

Length = 4334

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 51/187 (27%), Positives = 75/187 (40%), Gaps = 49/187 (26%)

Query: 59  VKKILNGGGGLPSELMKEATNSFPK---AKLISAYGMTETSSSLTFMTLYDPTLETPGQL 115
           V+ +L+GGG L       AT  F       +I  +G+TET                    
Sbjct: 430 VRAMLSGGGPL-----SAATQEFVNVVFGMVIQGWGLTETVCCGGI-------------- 470

Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSSHV------GRILTRGAHVMLRY 168
            Q  G++ PN         VG+    VE+K+  ++   H       G IL RG  +   Y
Sbjct: 471 -QRTGDLEPN--------AVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGY 521

Query: 169 WDQFLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYPEEVE 222
           + Q      + T EV     W  TGD+GSI   G + ++GR     K   GE +  E +E
Sbjct: 522 YKQ----EEL-TREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALE 576

Query: 223 AVLLQHP 229
           A+  Q+ 
Sbjct: 577 ALYGQNE 583

Length = 700

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 42/190 (22%)

Query: 147 CSDGSSHVGRILTRGAHVMLRYWDQ----------FLAKPSVSTGE-VWLDTGDIGSIDD 195
           C  G+  VG I   G +V   YW +           L  PS  T E  WL TGD+G I +
Sbjct: 392 CPAGT--VGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFISE 449

Query: 196 GGNVWLVGRRNGRIKS----GGENVYPEEVEAVLLQHPGIIGIVVVGIA-NARLTEMVVA 250
           G  +++V    GRIK      G N YP+++EA + +   I G  V  I+     TE +VA
Sbjct: 450 GE-LFIV----GRIKDLLIVDGRNHYPDDIEATIQE---ITGGRVAAISVPDDGTEKLVA 501

Query: 251 CVRLRESWQWSESNCDQSSKNKELLLSSEVL----RQHCREKNLTGFKAPRLFVLWRKPF 306
            + L++       + D+ + ++   +  EV     + H       G     L ++     
Sbjct: 502 IIELKK-----RGDSDEEAMDRLRTVKREVTSAISKSH-------GLSVADLVLVAPGSI 549

Query: 307 PLTSTGKIRR 316
           P+T++GKIRR
Sbjct: 550 PITTSGKIRR 559

Length = 578

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 80/313 (25%), Positives = 125/313 (39%), Gaps = 63/313 (20%)

Query: 37  PAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS 96
           P+ M D     ++K    GR  V+ + +G   L  ++M+     F   +++  YGMTETS
Sbjct: 358 PSPMWDRLVFNKIKAKLGGR--VRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETS 414

Query: 97  SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS-------- 148
             ++ M   D                   S H      VG P P  E+K+          
Sbjct: 415 CVISGMDEGDNL-----------------SGH------VGSPNPACEVKLVDVPEMNYTS 451

Query: 149 -DGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLV 202
            D     G I  RG  +   Y+     K  V T EV     WL TGDIG    GG + ++
Sbjct: 452 EDQPYPRGEICVRGPIIFKGYY-----KDEVQTREVIDEDGWLHTGDIGLWLPGGRLKII 506

Query: 203 GRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIA-NARLTEMVVACVRLRESWQW 260
            R+    K + GE + PE++E V  +   +    V G + N+ L  +VV    + ++W  
Sbjct: 507 DRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAA 566

Query: 261 SESN--------CDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP----- 307
           SE          C+       +L   + +    RE  L GF+  +   L  +PF      
Sbjct: 567 SEGIKYEDLKQLCNDPRVRAAVLADMDAV---GREAQLRGFEFAKAVTLVPEPFTVENGL 623

Query: 308 LTSTGKIRRDEVR 320
           LT T K++R + +
Sbjct: 624 LTPTFKVKRPQAK 636

Length = 651

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 168 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
           YW +F          VW+  GD   +D+ G  +++GR +  IK  G+ V P E+E+VL  
Sbjct: 329 YWSRF--------PGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNS 379

Query: 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSE 262
           HP +     +G+ +    E +V  V L+     S 
Sbjct: 380 HPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSA 414

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 27/203 (13%)

Query: 125 NSVHQPQGVCVGKPAPHVELKV-----CSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVS 179
           N V + +   +G+  P  E++V      + G    G +  RG  +   YW++     S  
Sbjct: 305 NRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNR---PDSPV 361

Query: 180 TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI 239
             E WLDT D   ID  G V    R +     GG NV P EVE ++++   +    VV +
Sbjct: 362 ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAV 421

Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE--KNLTGFKAPR 297
             +     + A +        S +  D S           V+R   R     L+ FK P 
Sbjct: 422 RESTGASTLQAFLV-----ATSGATIDGS-----------VMRDLHRGLLNRLSAFKVPH 465

Query: 298 LFVLWRKPFPLTSTGKIRRDEVR 320
            F +  +  P T  GK+ R  +R
Sbjct: 466 RFAVVDR-LPRTPNGKLVRGALR 487

Length = 705

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 19/178 (10%)

Query: 84  AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPN-SVHQPQGVCVGKPAPHV 142
             ++  +G TE   ++T          TP   P A G + P  ++  P     G   P  
Sbjct: 291 CVVVDGFGSTEGGVAIT---------RTPDTPPGALGPLPPGVAIVDPDT---GTECPPA 338

Query: 143 ELKVCS--DGSSHVGRIL-TRGAHVMLRYW-DQFLAKPSVSTGEVWLDTGDIGSIDDGGN 198
           E       +    +G ++ T G      Y+ D       +  G  W  +GD+   D  G 
Sbjct: 339 EDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYW--SGDLAYRDADGY 396

Query: 199 VWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE 256
            +  GR    ++  GEN+    +E +LL++P    + V  + +  + + V+A + L  
Sbjct: 397 AYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAP 454

Length = 529

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 15/130 (11%)

Query: 187 TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 246
           TGD    D  G +W+ GR +  I   G  +   E+E+ L+ HP +    VVGI +    +
Sbjct: 479 TGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQ 538

Query: 247 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF 306
            + A V L++ ++  +          EL    + LR+H R K +     P   + +    
Sbjct: 539 AIYAFVTLKDGYEPDD----------EL---RKELRKHVR-KEIGPIAKPDK-IRFVPGL 583

Query: 307 PLTSTGKIRR 316
           P T +GKI R
Sbjct: 584 PKTRSGKIMR 593

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 40/164 (24%)

Query: 71   SELMKEATNSFPKAK----LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNS 126
            +E +KE T      K    ++  YG+TET+  +   T   P     G             
Sbjct: 916  AEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNT---PMHNKAGT------------ 960

Query: 127  VHQPQGVCVGKPAPHVELKV-----CSDGSSHVGRILTRGAHVMLRYWDQFLAKPSV--S 179
                    VG+  P +E ++       +G    GR+  RG +VML Y       P V   
Sbjct: 961  --------VGRLLPGIEYRLEPVPGIDEG----GRLFVRGPNVMLGYLR--AENPGVLEP 1006

Query: 180  TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA 223
              + W DTGDI +ID+ G + + GR     K  GE +    VE 
Sbjct: 1007 PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEE 1050

Length = 1140

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 72/314 (22%), Positives = 123/314 (39%), Gaps = 58/314 (18%)

Query: 25  VEQHCVTSLITVP----AIMADLATLIRVKKTWKGRD--SVKKILNGGGGLPSELMKEAT 78
           +E++ V +L T P    AI         +KK     D  S++ +   G  L S  ++   
Sbjct: 311 IEEYGVNALFTAPTAIRAIRKQDPDGEYIKKY----DLSSLRALFLAGERLDSPTLEWIE 366

Query: 79  NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP 138
            +     +I  +  TET   +T              LP   G  +P           GKP
Sbjct: 367 KTLGVP-VIDHWWQTETGWPIT------ANCVGLELLPIKPG--SP-----------GKP 406

Query: 139 APHVELKVCSD-----GSSHVGRI-----LTRGAHVMLRYW--DQFLAKPSVSTGEVWLD 186
            P  +++V  +     G   +G I     L  G   +L  W  D+   K  ++    + D
Sbjct: 407 VPGYDVQVLDETGEELGPGELGNIVIKLPLPPGC--LLTLWGDDERFKKLYLNKFPGYYD 464

Query: 187 TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 246
           TGD G  D+ G ++++GR +  I   G  +   E+E  +L+HP +    VVG+ +    +
Sbjct: 465 TGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQ 524

Query: 247 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF 306
           + +  V L++             +N+        +    RE  +    A R  V++ K  
Sbjct: 525 VPLGLVVLKD----DCKIDADQLENE--------IVALVRE-QIGPVAAFRN-VVFVKRL 570

Query: 307 PLTSTGKIRRDEVR 320
           P T +GKI R  +R
Sbjct: 571 PKTRSGKILRRTLR 584

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 59/249 (23%), Positives = 88/249 (35%), Gaps = 49/249 (19%)

Query: 23   EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR-DSVKKILNGGGGLPSELMKEATNSF 81
            + V +H  T L+  P     L   +R KK       S++ ++ G   L  E+       F
Sbjct: 866  KLVAKHRATILLGTPTF---LRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF 922

Query: 82   PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH 141
               +++  YG TETS   +      P +       Q             +G  VG P P 
Sbjct: 923  GI-RILEGYGATETSPVASVNL---PDVLAADFKRQTG---------SKEG-SVGMPLPG 968

Query: 142  VELKV--------CSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV--------WL 185
            V +++           G    G IL  G  VM  Y           T EV        W 
Sbjct: 969  VAVRIVDPETFEELPPGED--GLILIGGPQVMKGYLGD-----PEKTAEVIKDIDGIGWY 1021

Query: 186  DTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYP-----EEVEAVLLQHPGIIGIVVVGIA 240
             TGD G +D+ G + +  R +   K GGE V P     EE+   L     +    V  + 
Sbjct: 1022 VTGDKGHLDEDGFLTITDRYSRFAKIGGEMV-PLGAVEEELAKALGGEEVV--FAVTAVP 1078

Query: 241  NARLTEMVV 249
            + +  E +V
Sbjct: 1079 DEKKGEKLV 1087

Length = 1146

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 41/270 (15%)

Query: 58   SVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
             V+  + GG  L  E ++    +F      +AYG TET      M L       P QL +
Sbjct: 2449 PVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTET----VVMPLACLA---PEQLEE 2501

Query: 118  AFGNVTPNSVHQPQGVCVGKPAPHV---ELKVCSDGSSHVGRILTRGAHVMLRYWDQ--- 171
               +V       P G  VG    ++   +L +   G++  G +   GA +   Y D+   
Sbjct: 2502 GAASV-------PIGRVVGARVAYILDADLALVPQGAT--GELYVGGAGLAQGYHDRPGL 2552

Query: 172  ----FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
                F+A P  + G     TGD+  +   G V  VGR + ++K  G  +   E+E+ LL+
Sbjct: 2553 TAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLE 2612

Query: 228  HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS-SEVLRQHCR 286
            HP +   VV+ +      ++    V               + ++ E   +  E L+ H +
Sbjct: 2613 HPAVREAVVLALDTPSGKQLAGYLV------------SAVAGQDDEAQAALREALKAHLK 2660

Query: 287  EKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
            ++ L  +  P   +L     PLT+ GK+ R
Sbjct: 2661 QQ-LPDYMVPAHLILLDS-LPLTANGKLDR 2688

Length = 4334

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNG---RIKSGGENVYPEEVEAVLLQHPGIIGIVVV 237
           G+ W +TGD+   D  G+   V R  G   R K  GENV   EVE  L   PG+   VV 
Sbjct: 437 GDAWFNTGDLMRDDGFGHAQFVDRL-GDTFRWK--GENVATTEVENALSGFPGVEEAVVY 493

Query: 238 GIA 240
           G+ 
Sbjct: 494 GVE 496

Length = 600

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 15/144 (10%)

Query: 187 TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 246
           +GD  S D  G  WL GR +  I   G  +   EVE+ L+ HP      VVGI +    +
Sbjct: 517 SGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQ 576

Query: 247 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF 306
            + A V L E   +SE            L  S +L    +   +  F AP   + W    
Sbjct: 577 GIYAFVTLVEGVPYSEE-----------LRKSLILTVRNQ---IGAFAAPDK-IHWAPGL 621

Query: 307 PLTSTGKIRRDEVRREVMSHLKSL 330
           P T +GKI R  +R+     L  L
Sbjct: 622 PKTRSGKIMRRILRKIASRQLDEL 645

Length = 666

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 28/201 (13%)

Query: 128 HQP-QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYW--DQFLAKPSVS-TGEV 183
            QP   V +  P     L+V  D    VG I   G  +   YW   +  AK  V   G  
Sbjct: 375 SQPGHAVLIVDP---QSLEVLGDNR--VGEIWASGPSIAHGYWRNPEASAKTFVEHDGRT 429

Query: 184 WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII--GIVVVGIAN 241
           WL TGD+G + D G +++ GR    +   G N+YP+++E  + +   ++  G V     N
Sbjct: 430 WLRTGDLGFLRD-GELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVN 488

Query: 242 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS-SEVLRQHCREKNLTGFKAPRLFV 300
            +  E +     +  S Q       +    + L+ S  + + + C+E       AP + +
Sbjct: 489 HQGEEGIGIAAEISRSVQ-------KILPPQALIKSIRQAVAEACQE-------APSVVL 534

Query: 301 LWRK-PFPLTSTGKIRRDEVR 320
           L      P TS+GK++R   R
Sbjct: 535 LLNPGALPKTSSGKLQRSACR 555

Length = 4334

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 187 TGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTE 246
           TGD    D+ G  W++GR +  I   G  +   EVE+ L+ HP +    VVG  +    E
Sbjct: 467 TGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGE 526

Query: 247 MVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF 306
            + A V L++  + S+             L  E L++H R++ +     P   +++    
Sbjct: 527 AIYAFVTLKDGVEPSDE------------LRKE-LKKHVRKE-IGPIATPD-EIIFVPGL 571

Query: 307 PLTSTGKI-RR 316
           P T +GKI RR
Sbjct: 572 PKTRSGKIMRR 582

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 75/299 (25%), Positives = 127/299 (42%), Gaps = 61/299 (20%)

Query: 48  RVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKA----KLISAYGMTETSSSLTFMT 103
           +VK+   G  +V+ IL+G   L S +      SF +      ++  YG+TE+ +  TF++
Sbjct: 379 KVKQGLGG--NVRIILSGAAPLASHV-----ESFLRVVACCHVLQGYGLTESCAG-TFVS 430

Query: 104 LYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD--------GSSHVG 155
           L D  L+  G                     VG P P+V++++ S          S+  G
Sbjct: 431 LPD-ELDMLGT--------------------VGPPVPNVDIRLESVPEMEYDALASTPRG 469

Query: 156 RILTRGAHVMLRYWD-QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGG 213
            I  RG  +   Y+  + L K  +  G  WL TGD+G     G++ ++ R+    K S G
Sbjct: 470 EICIRGKTLFSGYYKREDLTKEVLIDG--WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQG 527

Query: 214 ENVYPEEVEAVLLQHPGIIGIVVVGIA-NARLTEMVVACVRLRESWQWS-------ESNC 265
           E V  E +E +  +   +  + V G +  + L  +     ++ E W           + C
Sbjct: 528 EYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALC 587

Query: 266 DQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEV 319
            Q+ K KE +L    L +  +EK + GF+  +   L   PF      LT T K +R ++
Sbjct: 588 -QNEKAKEFILGE--LVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQL 643

Length = 666

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 20/112 (17%)

Query: 135 VGKPAPHVELKVCSDG-----------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV 183
           VG+P P V++ + +             S+  G +  +    ML YW+     P   T EV
Sbjct: 344 VGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNN----PE-RTAEV 398

Query: 184 ----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI 231
               W++TGD+    + G  ++ GR +  I  GG N+ P+EV+ +     G+
Sbjct: 399 LIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGV 450

Length = 540

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 74/294 (25%), Positives = 115/294 (39%), Gaps = 57/294 (19%)

Query: 48  RVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDP 107
           ++K+   GR  V+ +L+G   LP  + +E       + L   YG+TE S    F ++   
Sbjct: 376 KIKEGLGGR--VRLLLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTE-SCGGCFTSI--- 428

Query: 108 TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS------DGSSHV--GRILT 159
                        NV            VG P   +E ++ S      D  S V  G I  
Sbjct: 429 ------------ANVFS------MVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICL 470

Query: 160 RGAHVMLRYWD-QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVY 217
           RG  +   Y   Q L +  +  G  W  TGDIG     G + ++ R+    K S GE V 
Sbjct: 471 RGNTLFSGYHKRQDLTEEVLIDG--WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVA 528

Query: 218 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQ-WSESN---------CDQ 267
            E +E    + P I  I V G  N+  + +V   V  R++ + W+ +N         C  
Sbjct: 529 VENLENTYSRCPLIASIWVYG--NSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKN 586

Query: 268 SSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPL-----TSTGKIRR 316
               K +L   + L    ++  L GF+  +   L   PF +     T T K++R
Sbjct: 587 LKARKYIL---DELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKR 637

Length = 660

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 36/195 (18%)

Query: 66  GGGLPSELMKEATNSFPKAKLISAYGMTETSSSLT----------FMTLYDPTLETPGQL 115
           G GL  ++ ++    F   ++   YG TE +SSL           F +   P++  P +L
Sbjct: 226 GNGLRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVNIDNHVGACGFNSRILPSV-YPIRL 284

Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH--VGRILTRGAHVMLRYWDQFL 173
            +     T   +    G+C+           C  G     VG+I+       LR +D ++
Sbjct: 285 IKV-DEDTGELIRDSDGLCI----------PCQPGEPGLLVGKIIQNDP---LRRFDGYV 330

Query: 174 ---------AKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 224
                    A+     G+    +GD+  +D+ G ++   R     +  GENV   EVE +
Sbjct: 331 NEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGI 390

Query: 225 LLQHPGIIGIVVVGI 239
           L    G+  +VV G+
Sbjct: 391 LSNVLGLEDVVVYGV 405

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
           G++W  TGD+   D  G  + + R     +   ENV   EV  VL   P +    V G+ 
Sbjct: 336 GDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVK 395

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
                +    C  +       ES+  ++   K L      L +  R K L  +  P LF+
Sbjct: 396 VPG-YDGRAGCAAI----TLEESSAVETEFTKNL------LAKLAR-KRLPSYAVP-LFL 442

Query: 301 LWRKPFPLTSTGKIRRDEVRRE 322
              +    T   K ++  +R+E
Sbjct: 443 RLTEEVATTGNHKQQKGVLRKE 464

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 27/87 (31%)

Query: 86  LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELK 145
           +++  GMTET+ S TF T     L   G                     +G PAP  E+K
Sbjct: 368 MMTGLGMTETAPSATFTT---GPLSRAG--------------------NIGLPAPGCEVK 404

Query: 146 -VCSDGSSHVGRILTRGAHVMLRYWDQ 171
            V   G   V R+  +G +V   YW  
Sbjct: 405 LVPVGGKLEV-RV--KGPNVTPGYWRA 428

Length = 614

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 20/150 (13%)

Query: 168 YWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
           YW  F  +P  S+        D G  D+ G  +++GR +  I   G  +   E+E  +  
Sbjct: 465 YWSHF-KRPLYSSF-------DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSS 516

Query: 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 287
           HP +  + VVG+ +    ++ V    L+ES    +++ D  +    +          C  
Sbjct: 517 HPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAH-DPHAVETGM--------MDCVV 567

Query: 288 KNLTGFKAP-RLFVLWRKPFPLTSTGKIRR 316
           + L     P R++ +     P T +GK+ R
Sbjct: 568 RQLGAVARPARVYFV--AALPKTRSGKLLR 595

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 14/105 (13%)

Query: 135 VGKPAPHVELKVCS-DGSSHVGRILTRGAHVMLRYWDQFLAKPSV--------STGEV-- 183
           VG+  P ++ ++ S  G    GR+  +G ++M  Y    + KP V        + GE+  
Sbjct: 533 VGRILPGMDARLLSVPGIEQGGRLQLKGPNIMNGYLR--VEKPGVLEVPTAENARGEMER 590

Query: 184 -WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
            W DTGDI   D+ G V + GR     K  GE V  E VE + L 
Sbjct: 591 GWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALG 635

Length = 718

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 77/309 (24%), Positives = 122/309 (39%), Gaps = 56/309 (18%)

Query: 22   LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81
            L  V+   +T L +VP+++  +     + +  +  D ++ +L  G  +P EL ++    +
Sbjct: 3953 LAHVQAQGITVLESVPSLIQGM-----LAEDRQALDGLRWMLPTGEAMPPELARQWLQRY 4007

Query: 82   PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQ---------PQG 132
            P+  L++AYG  E S  + F  + D        LP   G+ T N+            P G
Sbjct: 4008 PQIGLVNAYGPAECSDDVAFFRV-DLASTRGSYLP--IGSPTDNNRLYLLDEALELVPLG 4064

Query: 133  VCVGKPAPHVELKVCSDGSSHVGRILTRGAHVM--LRYWDQFLAKPSVSTGEVWLDTGDI 190
              VG      EL V   G   VGR      +V   LR    F+  P  + GE    TGD+
Sbjct: 4065 A-VG------ELCVAGTG---VGR-----GYVGDPLRTALAFVPHPFGAPGERLYRTGDL 4109

Query: 191  GSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI---IGIVVVGIANARLTEM 247
                  G +  VGR + ++K  G  +   E+EA L +   +      V  G+    L   
Sbjct: 4110 ARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGY 4169

Query: 248  VVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP 307
            +V            ++   Q      LL   E ++Q  R   L  +  P L  LW    P
Sbjct: 4170 LVP----------HQTVLAQG----ALL---ERIKQRLR-AELPDYMVP-LHWLWLDRLP 4210

Query: 308  LTSTGKIRR 316
            L + GK+ R
Sbjct: 4211 LNANGKLDR 4219

Length = 4334

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 25/86 (29%)

Query: 86  LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELK 145
           + S  G TET+ + TF+       +  G                     +G PAP  ELK
Sbjct: 323 MTSGLGATETAPTATFVHW---PTDRSG--------------------VIGLPAPGTELK 359

Query: 146 VCSDGSSHVGRILTRGAHVMLRYWDQ 171
           +  +G     R+  +G +V   YW  
Sbjct: 360 LVPNGGKLEVRV--KGPNVTPGYWRD 383

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.98
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.97
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.97
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.97
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.95
PRK09188	365	serine/threonine protein kinase; Provisional	99.9
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.9
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.89
PTZ00297	1452	pantothenate kinase; Provisional	99.89
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.85
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.83
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.64
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.51
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.31
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.05
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.08
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	98.03
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.98
PLN02249	597	indole-3-acetic acid-amido synthetase	97.0
PLN02620	612	indole-3-acetic acid-amido synthetase	96.83
PLN02247	606	indole-3-acetic acid-amido synthetase	95.88

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9.9e-56  Score=409.47  Aligned_cols=283  Identities=31%  Similarity=0.477  Sum_probs=255.9

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      .+..|+++++.+.+++..+++.+++|++|+++++|.++..|+..+....  .+++++|.+.+||+++++++.+++++.||
T Consensus       247 ~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~--~~l~sl~~v~~gga~~~~~~~~~~~~~l~  324 (537)
T KOG1176|consen  247 LLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKK--YDLSSLRSVLSGGAPLSPATLEKVKERLP  324 (537)
T ss_pred             HHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCc--ccCCccEEEEecCCCCCHHHHHHHHHhCC
Confidence            4566777778888999999999999999999999999999998763333  36999999999999999999999999997


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      ...+.+.||+||+++.++.+...+..                      +++++|.+++++..++.++.     .++.|||
T Consensus       325 ~~~v~q~YGmTE~~~~~~~~~~~~e~----------------------k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI  382 (537)
T KOG1176|consen  325 NVTVIQGYGMTEAGGLITSNDWGPER----------------------KPGSVGRLLPGVRVKVLDETGVSLGPNQTGEI  382 (537)
T ss_pred             CceEEEeeccccccCceeecCCCccC----------------------cccccCccccceEEEeeCCCCCCCCCCCceEE
Confidence            79999999999999777665544320                      45579999998888887654     6788999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      |++|+.++.||+++|++|+..++++|||+|||+|++|+||++++++|++|+||.+|++|+|.|||++|.+||.|.||+||
T Consensus       383 ~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVv  462 (537)
T KOG1176|consen  383 CVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVV  462 (537)
T ss_pred             EEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEE
Confidence            99999999999999999999998889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +++|+..|+.++|+|+.+++                ....+++|++++++ +++.|++|+.++++ ++||+|++|||+|+
T Consensus       463 gipDe~~Ge~p~A~VV~k~g----------------~~lte~di~~~v~k-~l~~y~~~~~V~Fv-d~lPKs~~GKi~R~  524 (537)
T KOG1176|consen  463 GIPDEVWGETPAAFVVLKKG----------------STLTEKDIIEYVRK-KLPAYKLPGGVVFV-DELPKTPNGKILRR  524 (537)
T ss_pred             cccccccCCcceEEEEecCC----------------CcCCHHHHHHHHHh-hCChhhccCeEEEe-ccCCCCCcchHHHH
Confidence            99999999999999999985                35789999999999 79999999999875 78999999999999


Q ss_pred             HHHHHHHhhc
Q 019921          318 EVRREVMSHL  327 (334)
Q Consensus       318 ~l~~~~~~~~  327 (334)
                      .||+.+.+.-
T Consensus       525 ~lr~~~~~~~  534 (537)
T KOG1176|consen  525 KLRDIAKKLG  534 (537)
T ss_pred             HHHHHHHhcc
Confidence            9999988753

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.2e-51  Score=380.31  Aligned_cols=280  Identities=26%  Similarity=0.382  Sum_probs=245.8

Q ss_pred             CceeeccceEEEcCC--C-CHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            1 MAMLMVGACHVFIPK--F-ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         1 l~~l~~G~~~v~~~~--~-~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      |++|++|+++++++.  + +++.+++.++++++|.+++.|+.++.|.+...  ....++++||.+.+.|||+++++++|+
T Consensus       233 ~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--~~~~dlssLr~~~SaGEPLnpe~~~w~  310 (528)
T COG0365         233 FSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--GEPYDLSSLRVLGSAGEPLNPEAFEWF  310 (528)
T ss_pred             HHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--cccccchhheeeeccCCCCCHHHHHHH
Confidence            468999999999864  2 38999999999999999999999999998865  333579999999999999999999999


Q ss_pred             HhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CC
Q 019921           78 TNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SS  152 (334)
Q Consensus        78 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g  152 (334)
                      .+++ ++++.+.||+||+++....... ..                       ++++.|.|+||+++.++|++     .+
T Consensus       311 ~~~~-g~~i~d~~gqTEtg~~~~~~~~-~~-----------------------~~g~~g~p~pG~~~~vvdd~g~~~~~~  365 (528)
T COG0365         311 YSAL-GVWILDIYGQTETGMGFIAGRP-PV-----------------------KNGSSGLPLPGYAVRRVDDEGNPVPPG  365 (528)
T ss_pred             HHHh-CCCEeccccccccCccccCCCC-Cc-----------------------CCCCCCCCCCCceeEEECCCCCcCCCC
Confidence            9999 8999999999999954443322 10                       22345999999999999986     45


Q ss_pred             ceeEEEEcCc--chhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921          153 HVGRILTRGA--HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG  230 (334)
Q Consensus       153 ~~Gel~v~g~--~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~  230 (334)
                      + |+|+++.+  +++++||++++.+...+.+. ||.|||.+++|+||++||+||.||+||++|+++.|.|||++|.+||.
T Consensus       366 ~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~  443 (528)
T COG0365         366 V-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPA  443 (528)
T ss_pred             c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcc
Confidence            6 99999985  89999999998888877555 99999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCC
Q 019921          231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS  310 (334)
Q Consensus       231 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~  310 (334)
                      |.|++|++++|+..++.+++||+++++...+              ...++|++++++ .+.++..|+.+.++ +.||||+
T Consensus       444 VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~--------------~L~~ei~~~vr~-~~~~~~~p~~i~fv-~~LPkT~  507 (528)
T COG0365         444 VAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN--------------ELAEEIRRHVAR-NIGPHAIPRKIRFV-DELPKTA  507 (528)
T ss_pred             eeeeEEEeccCCCCCcEEEEEEEecCCCChH--------------HHHHHHHHHHHh-ccCcccCCceEEEe-cCCCCCC
Confidence            9999999999999999999999999973211              357889999988 56679999999876 7799999


Q ss_pred             CCccchHHHHHHHHh
Q 019921          311 TGKIRRDEVRREVMS  325 (334)
Q Consensus       311 ~GKv~r~~l~~~~~~  325 (334)
                      ||||+|+.||+.+.+
T Consensus       508 sGKI~R~~lr~~~~~  522 (528)
T COG0365         508 SGKIQRRLLRKILHK  522 (528)
T ss_pred             cccHHHHHHHHHHhh
Confidence            999999999999874

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=6.3e-50  Score=383.91  Aligned_cols=331  Identities=68%  Similarity=1.106  Sum_probs=265.6

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|+++++|+++..|++..........+++||.+++||+++++++++.+.+.|
T Consensus       233 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~  312 (563)
T PLN02860        233 AMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLF  312 (563)
T ss_pred             HHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhc
Confidence            45778999999999999999999999999999999999999987754433323578999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcC
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG  161 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g  161 (334)
                      +++++++.||+||++..++.................................++|+|+|++++++++++.++.|||+++|
T Consensus       313 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~~g~~Gel~v~g  392 (563)
T PLN02860        313 PNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRG  392 (563)
T ss_pred             CCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCCCCceeEEEEec
Confidence            88999999999999865544332221100000000000000000001112346899999999999988889999999999


Q ss_pred             cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEec
Q 019921          162 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN  241 (334)
Q Consensus       162 ~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  241 (334)
                      ++++.||+++++.+...+..+|||+|||++++++||++++.||.||+|+++|++|+|.+||+++.+||+|.+++|++.++
T Consensus       393 ~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~  472 (563)
T PLN02860        393 PHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPD  472 (563)
T ss_pred             CcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEec
Confidence            99999999999999988888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHHHH
Q 019921          242 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR  321 (334)
Q Consensus       242 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~  321 (334)
                      +..++.++++|+++++.......  ............+.++++++++.++.|++|+.++++.++||+|++||++|++|++
T Consensus       473 ~~~~~~~~a~v~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~  550 (563)
T PLN02860        473 SRLTEMVVACVRLRDGWIWSDNE--KENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRR  550 (563)
T ss_pred             CcCCceEEEEEEECCcccccccc--chhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHH
Confidence            88889999999987653211110  0000111234567899999874599999999987766789999999999999999


Q ss_pred             HHHhhcccCCCCC
Q 019921          322 EVMSHLKSLPSNL  334 (334)
Q Consensus       322 ~~~~~~~~l~~~~  334 (334)
                      ++.+.+++|+++|
T Consensus       551 ~~~~~~~~~~~~~  563 (563)
T PLN02860        551 EVLSHLQSLPSNL  563 (563)
T ss_pred             HHHHHHhccccCC
Confidence            9999999999986

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-50  Score=351.20  Aligned_cols=290  Identities=37%  Similarity=0.583  Sum_probs=258.2

Q ss_pred             CceeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            1 MAMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         1 l~~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      +++|..|+|+|+++ .+++.+.+++|+++++|.++++|+++..++........  +++++|.++.||+++|+++.+.+.+
T Consensus       295 ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~--~~s~lr~~vigGa~~s~eLlk~iv~  372 (596)
T KOG1177|consen  295 MAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQV--DLSSLRKGVIGGAPVSPELLKLIVN  372 (596)
T ss_pred             HHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccC--chhhhhhheeCCCCCCHHHHHHHHH
Confidence            35788999999965 59999999999999999999999999999977766554  6889999999999999999999998


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                      ...=..+..+||+||+++..+.....++...                    ..-++|.-+++.+..++|.+     .+..
T Consensus       373 ~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~--------------------~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~  432 (596)
T KOG1177|consen  373 QMNMKDIAVAYGLTETSPVLFMSLLGDPPEE--------------------RIKSVGHLMDHYEAAIVDKDGSEVPLGTK  432 (596)
T ss_pred             hhCceeeEEEeeccccCcceeeecCCCCHHH--------------------HHhhhhhcccccccccccCCCCccccCCC
Confidence            6622346779999999988877766654322                    22369999999999999865     4566


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceE
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI  234 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  234 (334)
                      |||+++|++.|.|||++++.++.....+.||+|||.+.+|++|.++++||++|+|+.+|++|+|.+||+.|.+||.|.++
T Consensus       433 Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a  512 (596)
T KOG1177|consen  433 GELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEA  512 (596)
T ss_pred             ceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCcc
Q 019921          235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI  314 (334)
Q Consensus       235 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv  314 (334)
                      .|++++|++.++.++|+|.+.....+              ....++|+.+|+. ++..|++|+.++++ +.||+|.+|||
T Consensus       513 ~VVGV~D~R~GE~VCA~vRLqe~~e~--------------~~t~E~lKa~Ck~-klaHFKiPky~vf~-~~FPlT~tGKI  576 (596)
T KOG1177|consen  513 HVVGVPDERLGEEVCACVRLQEGAEG--------------KTTAETLKAMCKG-KLAHFKIPKYFVFV-DEFPLTTTGKI  576 (596)
T ss_pred             EEEccCCCcccceEEEEEEeeccccc--------------cccHHHHHHHHhc-ccccccCCcEEEEe-ccCcccccccc
Confidence            99999999999999999999886211              1578999999999 69999999999886 66999999999


Q ss_pred             chHHHHHHHHhhcc
Q 019921          315 RRDEVRREVMSHLK  328 (334)
Q Consensus       315 ~r~~l~~~~~~~~~  328 (334)
                      +|=++|++...+++
T Consensus       577 qKFeir~~~k~~l~  590 (596)
T KOG1177|consen  577 QKFEIREMSKGHLG  590 (596)
T ss_pred             hhHHHHHHHHhhcc
Confidence            99999999997765

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.1e-48  Score=371.84  Aligned_cols=284  Identities=35%  Similarity=0.581  Sum_probs=250.8

Q ss_pred             eeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCC-CccEEEeccCCCCHHHHHHHHh
Q 019921            3 MLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD-SVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         3 ~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      +++.|+++++.+  .+++..++..+.++++|+++++|+++..++........  .++ +||.+++||+++++++++++++
T Consensus       236 ~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~--~~~~~lr~~~~gg~~~~~~~~~~~~~  313 (534)
T COG0318         236 PLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDD--DLSSSLRLVLSGGAPLPPELLERFEE  313 (534)
T ss_pred             HHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCcc--ccccceEEEEecCCcCCHHHHHHHHH
Confidence            478899999998  59999999999999999999999999998887655443  234 4999999999999999999999


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                      .|+...+++.||+||+++.++...... . .                   ...+++|.|+|+++++|+|++     +|++
T Consensus       314 ~~~~~~i~~~YG~TE~~~~~~~~~~~~-~-~-------------------~~~~~~G~~~pg~~v~Ivd~~~~~~~pg~v  372 (534)
T COG0318         314 RFGPIAILEGYGLTETSPVVTINPPDD-L-L-------------------AKPGSVGRPLPGVEVRIVDPDGGEVLPGEV  372 (534)
T ss_pred             HhCCCceEEeecccccCceeecCCCch-h-h-------------------hcCCcccccCCCcEEEEEeCCCCccCCCCc
Confidence            995468999999999997766555443 1 0                   023357999999999999976     3668


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceE
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI  234 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  234 (334)
                      |||+++||+++.|||++++.+...|.++|||+|||+|++|++|+++|.||.+|+|+++|++|+|.+||+++.+||.|.++
T Consensus       373 Gei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~a  452 (534)
T COG0318         373 GEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEA  452 (534)
T ss_pred             eEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceE
Confidence            99999999999999999999988886679999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCcc
Q 019921          235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI  314 (334)
Q Consensus       235 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv  314 (334)
                      +|++++++..++.+++++++++...              ...+.+++.++++. .++.+++|+.+.++ ++||+|++||+
T Consensus       453 avvgvpd~~~Ge~~~a~v~~~~~~~--------------~~~~~~~i~~~~~~-~l~~~~~P~~v~~v-~~lP~t~sGKi  516 (534)
T COG0318         453 AVVGVPDERWGERVVAVVVLKPGGD--------------AELTAEELRAFLRK-RLALYKVPRIVVFV-DELPRTASGKI  516 (534)
T ss_pred             EEEeCCCCccCceEEEEEEEcCCCC--------------CCCCHHHHHHHHHh-hhhcccCCeEEEEe-CCCCCCCchhh
Confidence            9999999999999999999987511              11378999999999 79999999999875 88999999999


Q ss_pred             chHHHHHHHHh
Q 019921          315 RRDEVRREVMS  325 (334)
Q Consensus       315 ~r~~l~~~~~~  325 (334)
                      +|+.|++++..
T Consensus       517 ~r~~lr~~~~~  527 (534)
T COG0318         517 DRRALREEYRA  527 (534)
T ss_pred             hHHHHHHHHHh
Confidence            99999999887

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-47  Score=369.17  Aligned_cols=298  Identities=18%  Similarity=0.273  Sum_probs=244.1

Q ss_pred             ceeeccceEEEcCC--CC----HHHHHHHHHhhcceEEEechHHHHHHHHHHhhc---cccCCCCCccEEEeccCCCCHH
Q 019921            2 AMLMVGACHVFIPK--FE----SKSALEAVEQHCVTSLITVPAIMADLATLIRVK---KTWKGRDSVKKILNGGGGLPSE   72 (334)
Q Consensus         2 ~~l~~G~~~v~~~~--~~----~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~---~~~~~~~~lr~i~~gG~~l~~~   72 (334)
                      ++|+.|++++++++  +.    +..+++.++++++|+++++|++++.|++.....   ....++++||.+++||++++++
T Consensus       316 ~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~  395 (647)
T PTZ00237        316 GSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEES  395 (647)
T ss_pred             HHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHH
Confidence            46789999998764  22    688999999999999999999999988753211   1122578999999999999999


Q ss_pred             HHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC--
Q 019921           73 LMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--  150 (334)
Q Consensus        73 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~--  150 (334)
                      +++++++.+ ++++++.||+||+++.++..... ..                     ...+++|+|+|+++++++|++  
T Consensus       396 ~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~~~-~~---------------------~~~~s~G~p~~g~~~~i~d~~g~  452 (647)
T PTZ00237        396 IPEYIENKL-KIKSSRGYGQTEIGITYLYCYGH-IN---------------------IPYNATGVPSIFIKPSILSEDGK  452 (647)
T ss_pred             HHHHHHHhc-CCCEEeeechHHhChhhhccCCC-CC---------------------CCCCCCccCcCCceEEEECCCCC
Confidence            999999999 89999999999998654422210 00                     022469999999999999876  


Q ss_pred             ---CCceeEEEEcCc---chhhhhhhcccCCCCccCC-CceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHH
Q 019921          151 ---SSHVGRILTRGA---HVMLRYWDQFLAKPSVSTG-EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA  223 (334)
Q Consensus       151 ---~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~~~-~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~  223 (334)
                         .|+.|||+++++   +++.|||++++.+...|.. +|||+|||+|++|+||+++++||+||+||++|++|+|.+||+
T Consensus       453 ~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~  532 (647)
T PTZ00237        453 ELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIET  532 (647)
T ss_pred             CCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHH
Confidence               578899999985   7899999999887766643 689999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEecc
Q 019921          224 VLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWR  303 (334)
Q Consensus       224 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~  303 (334)
                      +|.+||.|.+++|++++++..++.++++|++++......         .......++|++++++ .++.+++|+.++++ 
T Consensus       533 ~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~---------~~~~~l~~~i~~~~~~-~l~~~~~P~~i~~v-  601 (647)
T PTZ00237        533 SILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQS---------IDLNKLKNEINNIITQ-DIESLAVLRKIIIV-  601 (647)
T ss_pred             HHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccC---------CCHHHHHHHHHHHHHh-hcCccccCcEEEEc-
Confidence            999999999999999999988899999999875311000         0011234678888888 79999999998875 


Q ss_pred             CCccCCCCCccchHHHHHHHHhhcccCCCC
Q 019921          304 KPFPLTSTGKIRRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       304 ~~lP~t~~GKv~r~~l~~~~~~~~~~l~~~  333 (334)
                      ++||+|++||++|+.|++++.+......++
T Consensus       602 ~~lP~T~sGKi~R~~Lr~~~~~~~~~~~~~  631 (647)
T PTZ00237        602 NQLPKTKTGKIPRQIISKFLNDSNYQLPDN  631 (647)
T ss_pred             CCCCCCCCccEeHHHHHHHHcCCCCCCCcc
Confidence            779999999999999999987664444443

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.9e-46  Score=365.37  Aligned_cols=290  Identities=20%  Similarity=0.191  Sum_probs=243.5

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      ++|+.|++++++++    +++..+++.|+++++|+++++|++++.|.+.........++++||.++++|+++++++++++
T Consensus       338 ~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~  417 (666)
T PLN02654        338 GPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWF  417 (666)
T ss_pred             HHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHH
Confidence            56889999999864    57999999999999999999999999998764322222357899999999999999999999


Q ss_pred             HhhCCC--CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----
Q 019921           78 TNSFPK--AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----  150 (334)
Q Consensus        78 ~~~~~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----  150 (334)
                      .+.+++  +++.+.||+||+++..+.......                     ...++++|.|+||++++|+|++     
T Consensus       418 ~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~---------------------~~~~gs~G~p~~g~~v~i~d~~g~~~~  476 (666)
T PLN02654        418 FNVVGDSRCPISDTWWQTETGGFMITPLPGAW---------------------PQKPGSATFPFFGVQPVIVDEKGKEIE  476 (666)
T ss_pred             HHHhCCCCCceeccccccccCCeeeccCCCCC---------------------CCCCCccCCCCCCceEEEECCCCCCCC
Confidence            999942  789999999999875542221100                     0134579999999999999875     


Q ss_pred             CCceeEEEEcC--cchhhhhhhcccCCCCccC--CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          151 SSHVGRILTRG--AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       151 ~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .++.|||++++  |+++.|||++++.+...+.  .+|||+|||++++|+||+++++||+||+||++|++|+|.+||++|.
T Consensus       477 ~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~  556 (666)
T PLN02654        477 GECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALV  556 (666)
T ss_pred             CCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHH
Confidence            35679999999  7899999999987765432  3689999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      +||.|.+++|++++++..++.++++|++++.....             ....++|++++++ .++.+++|+.+.++ +.|
T Consensus       557 ~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~-------------~~l~~~l~~~~~~-~L~~~~~P~~i~~v-~~l  621 (666)
T PLN02654        557 SHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYS-------------EELRKSLILTVRN-QIGAFAAPDKIHWA-PGL  621 (666)
T ss_pred             hCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCC-------------HHHHHHHHHHHHH-hCCCCcCCCEEEEC-CCC
Confidence            99999999999999998899999999988752100             1224578899999 79999999998875 789


Q ss_pred             cCCCCCccchHHHHHHHHhhc
Q 019921          307 PLTSTGKIRRDEVRREVMSHL  327 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~~~  327 (334)
                      |+|++||++|+.|++.+.++.
T Consensus       622 P~T~sGKi~r~~l~~~~~~~~  642 (666)
T PLN02654        622 PKTRSGKIMRRILRKIASRQL  642 (666)
T ss_pred             CCCCCcCchHHHHHHHHcCCC
Confidence            999999999999999987653

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.1e-47  Score=324.60  Aligned_cols=283  Identities=27%  Similarity=0.436  Sum_probs=256.9

Q ss_pred             CceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            1 MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         1 l~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      |+.+++|+|+|+.+..+|...+.+|++++||+...+|.....|++..+....  +++|||.+-+||+.+++++.+++...
T Consensus       251 LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~--~LsSLrllQVGGarl~~~~Arrv~~~  328 (542)
T COG1021         251 LGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERA--DLSSLRLLQVGGARLSATLARRVPAV  328 (542)
T ss_pred             hheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccC--CchheeEEeecCcccCHHHHhhchhh
Confidence            4689999999999999999999999999999999999999999999877554  79999999999999999999999999


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeecccc-CcceEEEeeCC-----CCce
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHV  154 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~-----~g~~  154 (334)
                      + +|++-+.|||.|.....+..  +++ .+.                   ...+.|+|+ |.=+++|+|.+     +||+
T Consensus       329 l-gC~LQQVFGMAEGLvnyTRL--DDp-~E~-------------------i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~  385 (542)
T COG1021         329 L-GCQLQQVFGMAEGLVNYTRL--DDP-PEI-------------------IIHTQGRPLSPDDEVRVVDADGNPVAPGEV  385 (542)
T ss_pred             h-CchHHHHhhhhhhhhccccc--CCc-hHh-------------------eeecCCCcCCCcceeEEecCCCCCCCCCCc
Confidence            9 99999999999977433322  111 111                   222589998 78899999987     7999


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceE
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI  234 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  234 (334)
                      |+|..+||..++||++.++.+...|+.+|||+|||++++++||++.+.||.+|+|+.+|+||..++||+.|..||.|.++
T Consensus       386 G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~A  465 (542)
T COG1021         386 GELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDA  465 (542)
T ss_pred             ceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCcc
Q 019921          235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI  314 (334)
Q Consensus       235 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv  314 (334)
                      ++++.+|.-.|+..|++|+.++.                 .....++++++++..+..|++|..+.++ +++|.|+-|||
T Consensus       466 AlVampDelLGEksCAfiv~~~~-----------------~~~~~qlr~~L~~~GlAa~K~PDrie~v-~~~P~T~VGKI  527 (542)
T COG1021         466 ALVAMPDELLGEKSCAFIVVKEP-----------------PLRAAQLRRFLRERGLAAFKLPDRIEFV-DSLPLTAVGKI  527 (542)
T ss_pred             hhhcCchhhcCcceeEEEEecCC-----------------CCCHHHHHHHHHHcchhhhcCCcceeec-ccCCCcccccc
Confidence            99999999999999999999875                 3667889999999999999999999875 88999999999


Q ss_pred             chHHHHHHHHhh
Q 019921          315 RRDEVRREVMSH  326 (334)
Q Consensus       315 ~r~~l~~~~~~~  326 (334)
                      +++.|++++...
T Consensus       528 dKk~Lr~~l~~~  539 (542)
T COG1021         528 DKKALRRRLASR  539 (542)
T ss_pred             cHHHHHHHhhhh
Confidence            999999988754

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.1e-45  Score=354.29  Aligned_cols=285  Identities=27%  Similarity=0.416  Sum_probs=245.2

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.+++..+++.++++++|++.++|+++..|.+...... ...++++|.+++||+++++++++++.+.|+
T Consensus       266 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~  344 (560)
T PLN02574        266 LLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVC-GEVLKSLKQVSCGAAPLSGKFIQDFVQTLP  344 (560)
T ss_pred             HHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccc-cCccccceEEEEecccCCHHHHHHHHHHCC
Confidence            4567999999999999999999999999999999999999887643211 124779999999999999999999999998


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGR  156 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Ge  156 (334)
                      ++++++.||+||++...+.......                     .....++|.|.|+++++|+|++      .|+.||
T Consensus       345 ~~~v~~~YG~tE~~~~~~~~~~~~~---------------------~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Ge  403 (560)
T PLN02574        345 HVDFIQGYGMTESTAVGTRGFNTEK---------------------LSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGE  403 (560)
T ss_pred             CCcEEecccccccCceeecCCCccc---------------------cCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeE
Confidence            8999999999999864432111110                     0123469999999999999853      578899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+|+|++++.||+++++.+...+..+|||+|||+++++++|++++.||.||+||++|++|++.+||++|.+|++|.+++|
T Consensus       404 i~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v  483 (560)
T PLN02574        404 LWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAV  483 (560)
T ss_pred             EEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEE
Confidence            99999999999999999998888789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++++++..++.++++|+.+++                .....+++.+++++ .++.++.|+.+.++ ++||+|++||++|
T Consensus       484 ~~~~~~~~g~~~~a~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~v~~v-~~iP~t~~GKi~r  545 (560)
T PLN02574        484 TAVPDKECGEIPVAFVVRRQG----------------STLSQEAVINYVAK-QVAPYKKVRKVVFV-QSIPKSPAGKILR  545 (560)
T ss_pred             EccccCCCCcceEEEEEeCCC----------------CCCCHHHHHHHHHH-hccCcccCcEEEEe-eccCCCCcchhhH
Confidence            999998888889999887654                12345789999999 79999999987765 7899999999999


Q ss_pred             HHHHHHHHhhc
Q 019921          317 DEVRREVMSHL  327 (334)
Q Consensus       317 ~~l~~~~~~~~  327 (334)
                      +.|++++.+..
T Consensus       546 ~~L~~~~~~~~  556 (560)
T PLN02574        546 RELKRSLTNSV  556 (560)
T ss_pred             HHHHHHHhhcc
Confidence            99999987643

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.4e-46  Score=362.03  Aligned_cols=305  Identities=24%  Similarity=0.311  Sum_probs=238.1

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhc-------------------------cc----
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVK-------------------------KT----   52 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~-------------------------~~----   52 (334)
                      .+++.|+++++.+. ++..+++.++++++|+++++|+++..+.+.....                         ..    
T Consensus       282 ~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (651)
T PLN02736        282 VMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSP  360 (651)
T ss_pred             HHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            35678999988765 8899999999999999999999998876542100                         00    


Q ss_pred             ----------cCCC-CCccEEEeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccC
Q 019921           53 ----------WKGR-DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN  121 (334)
Q Consensus        53 ----------~~~~-~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (334)
                                ...+ +++|.+++||+++++++.+++++.+ ++++++.||+||+++.++.......              
T Consensus       361 ~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~~~--------------  425 (651)
T PLN02736        361 MWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMDEGDN--------------  425 (651)
T ss_pred             hHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccCCCCC--------------
Confidence                      0001 4899999999999999999999988 8999999999999865543322110              


Q ss_pred             CCCCCCCCCCceeeccccCcceEEEeeCC---------CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEE
Q 019921          122 VTPNSVHQPQGVCVGKPAPHVELKVCSDG---------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGS  192 (334)
Q Consensus       122 ~~~~~~~~~~~~~~g~p~~~~~~~i~~~~---------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~  192 (334)
                               ..+++|+|+|+++++++|.+         .++.|||+++|++++.||+++++.+...|+.+|||+|||+|+
T Consensus       426 ---------~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~  496 (651)
T PLN02736        426 ---------LSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGL  496 (651)
T ss_pred             ---------CCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEE
Confidence                     33469999999999998832         234699999999999999999999999988899999999999


Q ss_pred             EcCCCcEEEeeccCceeee-CceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCcccc----cccccc
Q 019921          193 IDDGGNVWLVGRRNGRIKS-GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWS----ESNCDQ  267 (334)
Q Consensus       193 ~~~~G~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~  267 (334)
                      +|+||+++|+||.||+||. +|++|+|.+||++|.+||.|.+++|++.   ..++.++|+|++.+.....    ......
T Consensus       497 ~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~  573 (651)
T PLN02736        497 WLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYE  573 (651)
T ss_pred             EcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCcc
Confidence            9999999999999999995 7999999999999999999999999983   2466899999987641100    000000


Q ss_pred             c-----cchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc-----CCCCCccchHHHHHHHHhhcccCCCCC
Q 019921          268 S-----SKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSNL  334 (334)
Q Consensus       268 ~-----~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~l~~~~  334 (334)
                      .     ...+-.......+.+..++..|+.|++|+.+.++.+.++     +|++||++|+.+++.|.++|+++|++|
T Consensus       574 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~~y~~~  650 (651)
T PLN02736        574 DLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAEL  650 (651)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHHHHhhc
Confidence            0     000011112233444444447999999999998755443     899999999999999999999999876

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9.5e-46  Score=342.36  Aligned_cols=289  Identities=23%  Similarity=0.286  Sum_probs=251.5

Q ss_pred             CceeeccceEEEcCC--CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            1 MAMLMVGACHVFIPK--FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         1 l~~l~~G~~~v~~~~--~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      +++|++|+|+++...  +++..+++.+.++++|++++.|+.++.|.+..........+++||.+.++||++.++.++|+.
T Consensus       301 ~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~  380 (626)
T KOG1175|consen  301 YGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWK  380 (626)
T ss_pred             hhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHH
Confidence            358999999999864  599999999999999999999999998887766555444457899999999999999999999


Q ss_pred             hhCCCC-ceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------C
Q 019921           79 NSFPKA-KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------S  151 (334)
Q Consensus        79 ~~~~~~-~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~  151 (334)
                      +.+ +. ++.+.||+||+|+.++..-....                     .+++++.+.|.+++.+.|.|++      .
T Consensus       381 ~~~-~~~pv~e~~~qtEtG~~~i~~~~g~~---------------------p~~pg~~~~p~~g~~v~i~de~g~~~~~~  438 (626)
T KOG1175|consen  381 RVT-GLDPIYETYGQTETGGICITPKPGKL---------------------PIKPGSAGKPFPGYDVQILDENGNELPPS  438 (626)
T ss_pred             Hhc-CccchhhceeeeccCceeeeccCCCC---------------------CcCccccCCCCCCcceEEECCCCCCcCCC
Confidence            999 55 79999999999987776544331                     1267789999999999999986      2


Q ss_pred             CceeEEEEcC--c-chhhhhhhcccCCCCccCC--CceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          152 SHVGRILTRG--A-HVMLRYWDQFLAKPSVSTG--EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       152 g~~Gel~v~g--~-~~~~gy~~~~~~~~~~~~~--~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      ++.|+|+++.  | +.+++||++++........  .|+|+|||.+++|+||++|++||.||+|+++|+++++.|||+++.
T Consensus       439 ~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~  518 (626)
T KOG1175|consen  439 TGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALV  518 (626)
T ss_pred             CceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHh
Confidence            2789999998  4 7789999999844443333  689999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      +||.|.|++||+.+++..+|.+++||+++++...             .....++|+.++++ .+.+++.|+.|.++ +.|
T Consensus       519 ~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~-------------~~~L~kel~~~VR~-~igp~a~P~~I~~v-~~L  583 (626)
T KOG1175|consen  519 EHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHD-------------PEQLTKELVKHVRS-VIGPYAVPRLIVFV-PGL  583 (626)
T ss_pred             hCcchhheeeecCCCCCCCeEEEEEEEEcCCCCC-------------hHHHHHHHHHHHHh-hcCcccccceeEec-CCC
Confidence            9999999999999999999999999999997222             23557899999999 89999999999875 679


Q ss_pred             cCCCCCccchHHHHHHHHhh
Q 019921          307 PLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~~  326 (334)
                      |+|++||++|+.||+..+++
T Consensus       584 PkTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  584 PKTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             CccccchhHHHHHHHHhccC
Confidence            99999999999999998877

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=2.4e-45  Score=356.40  Aligned_cols=289  Identities=20%  Similarity=0.223  Sum_probs=243.4

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      ++|..|++++++++    +++..+++.++++++|+++++|++++.|.+.........++++||.+++||+++++++++++
T Consensus       299 ~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~  378 (625)
T TIGR02188       299 GPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWY  378 (625)
T ss_pred             HHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHH
Confidence            46789999998764    47999999999999999999999999998765432222357899999999999999999999


Q ss_pred             HhhCC--CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----
Q 019921           78 TNSFP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----  150 (334)
Q Consensus        78 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----  150 (334)
                      .+.++  ++++++.||+||+++.++.......                     ..+++++|.|+++++++++|++     
T Consensus       379 ~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~---------------------~~~~~~~G~p~~g~~~~i~d~~g~~~~  437 (625)
T TIGR02188       379 YKVVGKERCPIVDTWWQTETGGIMITPLPGAT---------------------PTKPGSATLPFFGIEPAVVDEEGNPVE  437 (625)
T ss_pred             HHHcCCCCCceEecccccccCCceeecCCCCC---------------------CcCCCcccCCcCCceEEEECCCCCCCC
Confidence            99884  3889999999999876543221100                     0134469999999999999865     


Q ss_pred             -CCceeEEEEcC--cchhhhhhhcccCCCCccC--CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          151 -SSHVGRILTRG--AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       151 -~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                       .|+.|||+++|  ++++.|||++++.+...+.  .+|||+|||++++|+||+++++||+||+||++|++|+|.+||++|
T Consensus       438 ~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l  517 (625)
T TIGR02188       438 GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESAL  517 (625)
T ss_pred             CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHH
Confidence             47889999999  6899999999876655442  368999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCC
Q 019921          226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP  305 (334)
Q Consensus       226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~  305 (334)
                      .+||.|.+++|++++++..++.++++|++++....             .....++|++++++ .++.+++|+.++++ ++
T Consensus       518 ~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~-------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~  582 (625)
T TIGR02188       518 VSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEP-------------DDELRKELRKHVRK-EIGPIAKPDKIRFV-PG  582 (625)
T ss_pred             HhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCC-------------CHHHHHHHHHHHHh-hcCCCccCcEEEEC-CC
Confidence            99999999999999999889999999998875210             01235789999999 79999999998875 77


Q ss_pred             ccCCCCCccchHHHHHHHHhh
Q 019921          306 FPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       306 lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      ||+|++||++|+.|++.+.+.
T Consensus       583 lP~t~sGKi~r~~l~~~~~~~  603 (625)
T TIGR02188       583 LPKTRSGKIMRRLLRKIAAGE  603 (625)
T ss_pred             CCCCCCccchHHHHHHHHcCC
Confidence            999999999999999998765

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4.6e-45  Score=348.24  Aligned_cols=279  Identities=25%  Similarity=0.376  Sum_probs=229.4

Q ss_pred             ceeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++.. .+++..+++.|+++++|++.++|+++..|++......  ..+++||.+++||+++++++.+++.+.
T Consensus       245 ~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~i~~gG~~l~~~~~~~~~~~  322 (539)
T PRK06334        245 FPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE--SCLPSLRFVVIGGDAFKDSLYQEALKT  322 (539)
T ss_pred             HHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc--cccccccEEEECCccCCHHHHHHHHHH
Confidence            3567899988875 4899999999999999999999999999987754432  257899999999999999999999999


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCce
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHV  154 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~  154 (334)
                      |+++.+++.||+||++.+++........                      ...++|.|+++++++++|++      .|+.
T Consensus       323 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~----------------------~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~  380 (539)
T PRK06334        323 FPHIQLRQGYGTTECSPVITINTVNSPK----------------------HESCVGMPIRGMDVLIVSEETKVPVSSGET  380 (539)
T ss_pred             CCCCeEEecccccccCceEEeccCCCCC----------------------CCCcCceecCCCEEEEEcCCCCccCCCCce
Confidence            9889999999999998665533221110                      22358999999999999854      5788


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCc-cCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcce
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSV-STGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG  233 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~-~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  233 (334)
                      |||+++|++++.||+++++.+... .++++||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.+||+|.+
T Consensus       381 Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~  460 (539)
T PRK06334        381 GLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNA  460 (539)
T ss_pred             EEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCcc
Confidence            999999999999999998865432 2457899999999999999999999999999999999999999999999999987


Q ss_pred             ------EEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc
Q 019921          234 ------IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP  307 (334)
Q Consensus       234 ------~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP  307 (334)
                            ++|+++++..  ..++++++..                    .+.+++++++++..++.|++|+.+.++ ++||
T Consensus       461 ~~~~~~~~v~~~~~~~--~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~P~~i~~v-~~lP  517 (539)
T PRK06334        461 ADHAGPLVVCGLPGEK--VRLCLFTTFP--------------------TSISEVNDILKNSKTSSILKISYHHQV-ESIP  517 (539)
T ss_pred             ccccCceEEEcCCCCc--eEEEEEEecc--------------------CChHHHHHHHHhcCCcccccchheeee-cccc
Confidence                  6777776432  3344444321                    124578888888447889999988765 7899


Q ss_pred             CCCCCccchHHHHHHHHhhc
Q 019921          308 LTSTGKIRRDEVRREVMSHL  327 (334)
Q Consensus       308 ~t~~GKv~r~~l~~~~~~~~  327 (334)
                      +|++|||+|+.|++.....+
T Consensus       518 ~t~~GKi~r~~L~~~~~~~~  537 (539)
T PRK06334        518 MLGTGKPDYCSLNALAKSLF  537 (539)
T ss_pred             cccCCcccHHHHHHHHHHhh
Confidence            99999999999999876643

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-45  Score=351.70  Aligned_cols=275  Identities=28%  Similarity=0.441  Sum_probs=236.5

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..+++..........+++||.+++||+++++++++++.+.|
T Consensus       268 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~  347 (549)
T PRK07788        268 LAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF  347 (549)
T ss_pred             HHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh
Confidence            35778999999888999999999999999999999999999887654311223478999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       ++++++.||+||++...........                      ..+.++|.|+++++++++|++     .|+.||
T Consensus       348 -~~~l~~~YG~TE~~~~~~~~~~~~~----------------------~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Ge  404 (549)
T PRK07788        348 -GPVLYNLYGSTEVAFATIATPEDLA----------------------EAPGTVGRPPKGVTVKILDENGNEVPRGVVGR  404 (549)
T ss_pred             -CccceeccCcchhchhhccChhhhh----------------------hcCCCcccCCCCcEEEEECCCcCCCCCCCeEE
Confidence             7899999999999854432211100                      023369999999999999876     578899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||++++..  .  ..++||+|||++++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|
T Consensus       405 l~v~g~~~~~gY~~~~~~--~--~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v  480 (549)
T PRK07788        405 IFVGNGFPFEGYTDGRDK--Q--IIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAV  480 (549)
T ss_pred             EEEeCCCccccccCCCcc--c--ccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence            999999999999988765  1  246899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++++++..++.++++|+++++                ...+.+++++++++ .++.|++|..++++ ++||+|++||++|
T Consensus       481 ~~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~lP~t~~GKi~r  542 (549)
T PRK07788        481 IGVDDEEFGQRLRAFVVKAPG----------------AALDEDAIKDYVRD-NLARYKVPRDVVFL-DELPRNPTGKVLK  542 (549)
T ss_pred             ECCcCcccccEEEEEEEeCCC----------------CCCCHHHHHHHHHH-hhhcCCCCcEEEEe-CCCCCCCCcCEeH
Confidence            999998888999999998764                12456889999999 79999999998875 7899999999999


Q ss_pred             HHHHH
Q 019921          317 DEVRR  321 (334)
Q Consensus       317 ~~l~~  321 (334)
                      ++|++
T Consensus       543 ~~L~~  547 (549)
T PRK07788        543 RELRE  547 (549)
T ss_pred             HHhhc
Confidence            99975

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=5.7e-45  Score=353.61  Aligned_cols=295  Identities=17%  Similarity=0.180  Sum_probs=240.6

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      ++|+.|++++++++    +++..+++.++++++|+++++|++++.|.+.........++++||.+++||+++++++++++
T Consensus       295 ~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~  374 (628)
T TIGR02316       295 APLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWI  374 (628)
T ss_pred             HHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHH
Confidence            46889999999863    57899999999999999999999999887653222222357899999999999999999999


Q ss_pred             HhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------C
Q 019921           78 TNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------S  151 (334)
Q Consensus        78 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~  151 (334)
                      .+.+ +..+++.||+||++..++.........                   ....+++|.|+|+++++++|++      .
T Consensus       375 ~~~~-~~~~~~~yG~TE~~~~~~~~~~~~~~~-------------------~~~~gs~G~p~~g~~v~i~d~~~g~~~~~  434 (628)
T TIGR02316       375 TDGL-GKPVIDNYWQTETGWPVLAIMPGLDLK-------------------PVKLGSPGLPMYGYHLRVLDEATGRPCGP  434 (628)
T ss_pred             HHHh-CCCEEecccccccCceeecCCCCCCcC-------------------CCCCCCcccCcCCceEEEEECCCCCCCCC
Confidence            9988 889999999999985443322111100                   0133468999999999999873      5


Q ss_pred             CceeEEEEcCc---chhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          152 SHVGRILTRGA---HVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       152 g~~Gel~v~g~---~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                      |+.|||+++||   +.+.+|+++++.+...+   .+++||+|||+|++|+||+++++||.||+||++|++|+|.+||++|
T Consensus       435 g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l  514 (628)
T TIGR02316       435 NEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESV  514 (628)
T ss_pred             CCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHH
Confidence            77899999998   57789998876654432   2468999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCC
Q 019921          226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP  305 (334)
Q Consensus       226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~  305 (334)
                      .+||.|.+++|++++++..++.++++|++++.....+.        .......++|++++++ .++.|++|+.++++ +.
T Consensus       515 ~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~--------~~~~~~~~~i~~~~~~-~L~~~~~P~~v~~v-~~  584 (628)
T TIGR02316       515 SSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDA--------HDPHAVETGMMDCVVR-QLGAVARPARVYFV-AA  584 (628)
T ss_pred             HhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccc--------cchHHHHHHHHHHHHH-hcCCCcCCCEEEEc-CC
Confidence            99999999999999999889999999998764211100        0011345789999999 79999999998875 77


Q ss_pred             ccCCCCCccchHHHHHHHHhh
Q 019921          306 FPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       306 lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      ||+|++||++|+.|++.+.+.
T Consensus       585 lP~t~sGKi~r~~L~~~~~~~  605 (628)
T TIGR02316       585 LPKTRSGKLLRRSIQALAEGR  605 (628)
T ss_pred             CCCCCchHHHHHHHHHHHcCC
Confidence            999999999999999987654

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-44  Score=352.14  Aligned_cols=289  Identities=18%  Similarity=0.207  Sum_probs=241.7

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      .+|+.|++++++++    +++..+++.|+++++|++.++|++++.|++..........+++||.+++||+++++++++++
T Consensus       308 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~  387 (637)
T PRK00174        308 GPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWY  387 (637)
T ss_pred             HHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHH
Confidence            46789999998753    57999999999999999999999999988764332222357899999999999999999999


Q ss_pred             HhhCC--CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----
Q 019921           78 TNSFP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----  150 (334)
Q Consensus        78 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----  150 (334)
                      .+.++  ++++++.||+||++..++........                     ..++++|.|+++++++++|++     
T Consensus       388 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~---------------------~~~~~vG~p~~g~~~~i~d~~g~~~~  446 (637)
T PRK00174        388 YKVVGGERCPIVDTWWQTETGGIMITPLPGATP---------------------LKPGSATRPLPGIQPAVVDEEGNPLE  446 (637)
T ss_pred             HHHhCCCCCceEecccccccCCceEecCCCCCC---------------------cCCCcccCCCCCceEEEECCCCCCCC
Confidence            99884  37899999999998755432211100                     023469999999999999875     


Q ss_pred             CCceeEEEEcC--cchhhhhhhcccCCCCcc--CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          151 SSHVGRILTRG--AHVMLRYWDQFLAKPSVS--TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       151 ~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~--~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .|+.|||+++|  ++++.||+++++.+...+  ..+|||+|||++++++||+++++||.||+||++|++|+|.+||++|.
T Consensus       447 ~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~  526 (637)
T PRK00174        447 GGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV  526 (637)
T ss_pred             CCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHH
Confidence            47889999999  689999999988665543  24689999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      ++|+|.+++|++.+++..++.++++|++.++...             .....++|++++++ .++.+++|..+.++ ++|
T Consensus       527 ~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~-------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~l  591 (637)
T PRK00174        527 AHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEP-------------SDELRKELRNWVRK-EIGPIAKPDVIQFA-PGL  591 (637)
T ss_pred             hCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCC-------------CHHHHHHHHHHHHh-hcCCccCCCEEEEc-CCC
Confidence            9999999999999999889999999998765110             01235679999999 79999999998875 789


Q ss_pred             cCCCCCccchHHHHHHHHhh
Q 019921          307 PLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~~  326 (334)
                      |+|++||++|+.|++.+.+.
T Consensus       592 P~t~~GKi~R~~L~~~~~~~  611 (637)
T PRK00174        592 PKTRSGKIMRRILRKIAEGE  611 (637)
T ss_pred             CCCCCcchHHHHHHHHHcCC
Confidence            99999999999999987655

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-44  Score=347.51  Aligned_cols=285  Identities=25%  Similarity=0.323  Sum_probs=242.8

Q ss_pred             ceeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++.. .+++..+++.|+++++|+++++|++++.|.+..........+++||.+++||+++++++.+++.+.
T Consensus       267 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~  346 (570)
T PRK04319        267 APWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKV  346 (570)
T ss_pred             HHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHH
Confidence            4678899998875 589999999999999999999999999988754322222357899999999999999999999998


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCcee
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~G  155 (334)
                      + +.++++.||+||++..++.......                      ..++++|.|+|++++++++++     .|+.|
T Consensus       347 ~-g~~i~~~YG~tE~~~~~~~~~~~~~----------------------~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~G  403 (570)
T PRK04319        347 F-GLPIHDNWWMTETGGIMIANYPAMD----------------------IKPGSMGKPLPGIEAAIVDDQGNELPPNRMG  403 (570)
T ss_pred             h-CCCeEeceeecccCCEEEecCCCCC----------------------CCCCcCcCCCCCCEEEEECCCCCCCCCCCce
Confidence            8 8999999999999875443221111                      023469999999999999876     57889


Q ss_pred             EEEEcC--cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcce
Q 019921          156 RILTRG--AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG  233 (334)
Q Consensus       156 el~v~g--~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  233 (334)
                      ||+++|  +.++.||+++++.+...+. ++||+|||+++++++|++++.||.||+|+.+|++|+|.+||++|.++|.|.+
T Consensus       404 el~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~  482 (570)
T PRK04319        404 NLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAE  482 (570)
T ss_pred             EEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeee
Confidence            999997  8999999999998888875 7899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCc
Q 019921          234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGK  313 (334)
Q Consensus       234 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK  313 (334)
                      ++|++.+++..++.+++++++.++...             .....+++++++++ .++.|++|+.++++ ++||+|++||
T Consensus       483 ~~v~g~~~~~~g~~~~a~v~~~~~~~~-------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~iP~t~~GK  547 (570)
T PRK04319        483 AGVIGKPDPVRGEIIKAFVALRPGYEP-------------SEELKEEIRGFVKK-GLGAHAAPREIEFK-DKLPKTRSGK  547 (570)
T ss_pred             cceecccCcCCceEEEEEEEECCCCCC-------------CHHHHHHHHHHHHH-hcccccCCcEEEEe-CCCCCCCchh
Confidence            999999998888999999987764110             01234688999999 79999999998875 7899999999


Q ss_pred             cchHHHHHHHHh
Q 019921          314 IRRDEVRREVMS  325 (334)
Q Consensus       314 v~r~~l~~~~~~  325 (334)
                      ++|+.|+++..+
T Consensus       548 v~r~~L~~~~~~  559 (570)
T PRK04319        548 IMRRVLKAWELG  559 (570)
T ss_pred             hhHHHHHHHHhC
Confidence            999999998654

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.6e-44  Score=341.63  Aligned_cols=291  Identities=16%  Similarity=0.150  Sum_probs=222.5

Q ss_pred             ceeeccceEEEcCC-CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .+++.|+++++++. +++..+++.|+++++|++.++|+++..|++.........++++||.+++||+++++++.+++++.
T Consensus       180 ~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~  259 (499)
T PLN03051        180 SAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSV  259 (499)
T ss_pred             HHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheEEEecCCCCCHHHHHHHHHh
Confidence            35788999999874 78899999999999999999999999887653211112246899999999999999999988874


Q ss_pred             CC-CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CC--
Q 019921           81 FP-KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SS--  152 (334)
Q Consensus        81 ~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g--  152 (334)
                      ++ ++++++.||+||++..++.......                      ...+++|.|.++++++|+|++     .|  
T Consensus       260 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------------------~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~  317 (499)
T PLN03051        260 RGYYKPVIEYCGGTELASGYISSTLLQP----------------------QAPGAFSTASLGTRFVLLNDNGVPYPDDQP  317 (499)
T ss_pred             ccccceeEeeeccccccceeecccccCC----------------------CCCccccCCCCCceEEEECCCCCCCCCCCC
Confidence            31 4789999999998753332111100                      023369999999999999875     33  


Q ss_pred             ceeEEEEcCcch--hhhhhhcccCCCCccCC--------CceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHH
Q 019921          153 HVGRILTRGAHV--MLRYWDQFLAKPSVSTG--------EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE  222 (334)
Q Consensus       153 ~~Gel~v~g~~~--~~gy~~~~~~~~~~~~~--------~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE  222 (334)
                      +.|||+++|+.+  +.||++++. +...+++        .+||+|||+|++|+||+++|+||.||+||++|++|+|.+||
T Consensus       318 ~~Gel~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE  396 (499)
T PLN03051        318 CVGEVALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIE  396 (499)
T ss_pred             cceEEEEecCcCCCCccccCCcc-cceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHH
Confidence            479999999976  579997653 3322322        23799999999999999999999999999999999999999


Q ss_pred             HHHhc-CCCcceEEEEEEecCcce-eEEEEEE---EeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccce
Q 019921          223 AVLLQ-HPGIIGIVVVGIANARLT-EMVVACV---RLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR  297 (334)
Q Consensus       223 ~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~  297 (334)
                      ++|.+ ||.|.+++|++++++..+ +.++++|   +++++..   .     .   ......+.+++++++ .++.+..|.
T Consensus       397 ~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~---~-----~---~~~~l~~~~~~~l~~-~l~~~~~~~  464 (499)
T PLN03051        397 RACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFD---Q-----A---RPEALQKKFQEAIQT-NLNPLFKVS  464 (499)
T ss_pred             HHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceeccccc---c-----c---chHHHHHHHHHHHHh-hcCCccCCc
Confidence            99996 999999999999998877 6788888   5554310   0     0   001122334444555 577755555


Q ss_pred             EEEeccCCccCCCCCccchHHHHHHHHhhcc
Q 019921          298 LFVLWRKPFPLTSTGKIRRDEVRREVMSHLK  328 (334)
Q Consensus       298 ~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~  328 (334)
                      .+.+ +++||+|++||++|++|++.+.+.++
T Consensus       465 ~i~~-v~~lP~t~~GKi~r~~L~~~~~~~~~  494 (499)
T PLN03051        465 RVKI-VPELPRNASNKLLRRVLRDQLKKELS  494 (499)
T ss_pred             eEEE-cCCCCCCCCccHHHHHHHHHHHHhhc
Confidence            6655 48899999999999999998887765

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.2e-44  Score=348.29  Aligned_cols=280  Identities=26%  Similarity=0.413  Sum_probs=235.5

Q ss_pred             ceeeccceEEEcCC--C-C---HHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHH
Q 019921            2 AMLMVGACHVFIPK--F-E---SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMK   75 (334)
Q Consensus         2 ~~l~~G~~~v~~~~--~-~---~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~   75 (334)
                      .++..|+++++.+.  + +   ...+++.++++++|++.++|+++..|++.....   ..+++||.+++||+++++++.+
T Consensus       275 ~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---~~~~slr~v~~gg~~l~~~l~~  351 (632)
T PRK07529        275 APLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDG---HDISSLRYALCGAAPLPVEVFR  351 (632)
T ss_pred             HHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccC---CCccceEEEEEcCCCCCHHHHH
Confidence            45788999998763  2 1   368899999999999999999999987654221   2578999999999999999999


Q ss_pred             HHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEe--eCC---
Q 019921           76 EATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC--SDG---  150 (334)
Q Consensus        76 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~--~~~---  150 (334)
                      ++++.+ ++++++.||+||++..++.......                      ...+++|.|+|++.++++  |++   
T Consensus       352 ~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~----------------------~~~~svG~~~p~~~v~i~~~d~~g~~  408 (632)
T PRK07529        352 RFEAAT-GVRIVEGYGLTEATCVSSVNPPDGE----------------------RRIGSVGLRLPYQRVRVVILDDAGRY  408 (632)
T ss_pred             HHHHHh-CCcEeeeecccccCcccccCCcccc----------------------ccCCCcccccCCceEEEEEcCCCCcc
Confidence            999998 8999999999999865543322111                      033469999999999885  332   


Q ss_pred             -----CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          151 -----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       151 -----~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                           .|+.|||+++|++++.||++++. +...+.+++||+|||++++++||++++.||.||+||.+|++|+|.+||++|
T Consensus       409 ~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l  487 (632)
T PRK07529        409 LRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEAL  487 (632)
T ss_pred             cccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHH
Confidence                 36889999999999999998754 445555789999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCC-CcccceEEEeccC
Q 019921          226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT-GFKAPRLFVLWRK  304 (334)
Q Consensus       226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~~~~p~~~~~~~~  304 (334)
                      .+||+|.+++|++.+++..++.++++|++.+.                ...+.+++++++++ .++ .+++|+.+.++ +
T Consensus       488 ~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~----------------~~~~~~~l~~~~~~-~l~~~~~~P~~i~~v-~  549 (632)
T PRK07529        488 LRHPAVALAAAVGRPDAHAGELPVAYVQLKPG----------------ASATEAELLAFARD-HIAERAAVPKHVRIL-D  549 (632)
T ss_pred             HhCCCeeEEEEEeccCCCCCceeEEEEEEcCC----------------CCCCHHHHHHHHHH-hcchhccCCcEEEEe-c
Confidence            99999999999999999889999999998875                12456789999999 565 57999998876 7


Q ss_pred             CccCCCCCccchHHHHHHHHhh
Q 019921          305 PFPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       305 ~lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      +||+|++||++|++|++.+...
T Consensus       550 ~lP~t~~GKi~r~~Lr~~~~~~  571 (632)
T PRK07529        550 ALPKTAVGKIFKPALRRDAIRR  571 (632)
T ss_pred             CCCCCCCCcccHHHHHHHHHHH
Confidence            7999999999999999887654

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=5.9e-44  Score=340.90  Aligned_cols=286  Identities=29%  Similarity=0.418  Sum_probs=245.1

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..|.+......  ..++++|.+++||+++++++.+.+.+.|
T Consensus       245 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~l~~~~~~~~~~~~  322 (537)
T PLN02246        245 CGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEK--YDLSSIRMVLSGAAPLGKELEDAFRAKL  322 (537)
T ss_pred             HHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccc--cCccceeEEEEecCcCCHHHHHHHHHHc
Confidence            35778999999999999999999999999999999999998876543322  2467899999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G  155 (334)
                      +++.+++.||+||++.+++..........                  ...++++|.|++++++++++++      .|+.|
T Consensus       323 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G  384 (537)
T PLN02246        323 PNAVLGQGYGMTEAGPVLAMCLAFAKEPF------------------PVKSGSCGTVVRNAELKIVDPETGASLPRNQPG  384 (537)
T ss_pred             CCCeEeccccccccCcccccccccCCCCc------------------cccCCccccccCCcEEEEecCCCCCcCCCCCce
Confidence            88899999999999865543211110000                  0123468999999999999853      57789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|++++.||+++++.+...++.++||+|||+++++++|++++.||.||+|+.+|++|+|.+||++|.++++|.+++
T Consensus       385 el~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~  464 (537)
T PLN02246        385 EICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAA  464 (537)
T ss_pred             EEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEE
Confidence            99999999999999999998888878899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++.++...++.++++++..++                .....+++++++++ .++.+++|..+.++ ++||+|++||++
T Consensus       465 v~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~-~l~~~~~p~~i~~~-~~~P~t~~GKi~  526 (537)
T PLN02246        465 VVPMKDEVAGEVPVAFVVRSNG----------------SEITEDEIKQFVAK-QVVFYKRIHKVFFV-DSIPKAPSGKIL  526 (537)
T ss_pred             EEcccCccCCceeEEEEEeCCC----------------CCCCHHHHHHHHHh-hCcCccccceEEEe-ccCCCCCcchhh
Confidence            9999888878888888887654                12456789999999 79999999988775 779999999999


Q ss_pred             hHHHHHHHHh
Q 019921          316 RDEVRREVMS  325 (334)
Q Consensus       316 r~~l~~~~~~  325 (334)
                      |++|++++.+
T Consensus       527 r~~L~~~~~~  536 (537)
T PLN02246        527 RKDLRAKLAA  536 (537)
T ss_pred             HHHHHHHHhc
Confidence            9999998753

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.1e-44  Score=341.65  Aligned_cols=281  Identities=27%  Similarity=0.454  Sum_probs=240.6

Q ss_pred             eeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            3 MLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         3 ~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      ++..|++.++.+ ..++..+++.++++++|+++++|+++..++.......  ..++++|.+++||+++++++++.+.+.+
T Consensus       273 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~v~~gG~~~~~~~~~~~~~~~  350 (562)
T PRK05677        273 MMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRK--LDFSALKLTLSGGMALQLATAERWKEVT  350 (562)
T ss_pred             HHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCccccc--CChhhceEEEEcCccCCHHHHHHHHHHc
Confidence            345677766655 4789999999999999999999999988876532222  2457899999999999999999999988


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       ++++++.||+||++.++........                       .++++|.|+++++++++|++     .|+.||
T Consensus       351 -~~~v~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Ge  406 (562)
T PRK05677        351 -GCAICEGYGMTETSPVVSVNPSQAI-----------------------QVGTIGIPVPSTLCKVIDDDGNELPLGEVGE  406 (562)
T ss_pred             -CCCeeccCCccccCcceeecCccCC-----------------------CCCccCccCCCCEEEEECCCCCCCCCCCCeE
Confidence             8999999999999865543221110                       23369999999999999876     577899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+...|..++||+|||+++++++|++++.||.+|+|+.+|++|+|.+||++|.++++|.+++|
T Consensus       407 l~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v  486 (562)
T PRK05677        407 LCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAA  486 (562)
T ss_pred             EEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEE
Confidence            99999999999999999999888888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++++++..++.+++++++++.                ...+.+++++++++ .++.|++|..+.++ ++||+|++||++|
T Consensus       487 ~g~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~iP~t~sGKi~r  548 (562)
T PRK05677        487 IGVPDEKSGEAIKVFVVVKPG----------------ETLTKEQVMEHMRA-NLTGYKVPKAVEFR-DELPTTNVGKILR  548 (562)
T ss_pred             EeccCccCCceEEEEEEeCCC----------------CCCCHHHHHHHHHH-hhhhccCCcEEEEe-ccCCCCCcccccH
Confidence            999998888888888887654                12456789999999 79999999998875 7799999999999


Q ss_pred             HHHHHHHHhhc
Q 019921          317 DEVRREVMSHL  327 (334)
Q Consensus       317 ~~l~~~~~~~~  327 (334)
                      ++|++++..+.
T Consensus       549 ~~L~~~~~~~~  559 (562)
T PRK05677        549 RELRDEELKKA  559 (562)
T ss_pred             HHHHHHHHHhc
Confidence            99998776554

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.8e-44  Score=336.85  Aligned_cols=280  Identities=32%  Similarity=0.534  Sum_probs=242.3

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|++.++|++++.+++......  ..++++|.+++||+++++++++.+.+. 
T Consensus       211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~~~~~~~~~~~~~-  287 (496)
T PRK06839        211 PTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFET--TNLQSVRWFYNGGAPCPEELMREFIDR-  287 (496)
T ss_pred             HHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCccccc--CCCcccceEEECCCCCCHHHHHHHHHh-
Confidence            35678999999888999999999999999999999999999987653322  357899999999999999999999886 


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       ++++++.||+||++..++........                     ...+++|.|+++++++++|++     .|+.||
T Consensus       288 -g~~~~~~YG~tE~~~~~~~~~~~~~~---------------------~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Ge  345 (496)
T PRK06839        288 -GFLFGQGFGMTETSPTVFMLSEEDAR---------------------RKVGSIGKPVLFCDYELIDENKNKVEVGEVGE  345 (496)
T ss_pred             -CCeeEeeccCCCCCcceEeccccccc---------------------ccCCCCcccCCCceEEEECCCcCCCCCCCceE
Confidence             89999999999998754433221110                     033469999999999999875     578899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+...+ .++||+|||+++++++|++++.||.+|+|+.+|++|+|.+||++|.++|+|.+++|
T Consensus       346 l~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v  424 (496)
T PRK06839        346 LLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAV  424 (496)
T ss_pred             EEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence            99999999999999998877666 57899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++++++..++.++++|+++++                .....+++++++++ .++.+++|..++++ ++||+|++||++|
T Consensus       425 ~~~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~P~~~~~v-~~~P~t~~GKi~r  486 (496)
T PRK06839        425 VGRQHVKWGEIPIAFIVKKSS----------------SVLIEKDVIEHCRL-FLAKYKIPKEIVFL-KELPKNATGKIQK  486 (496)
T ss_pred             EeccccccCceEEEEEEECCC----------------CCCCHHHHHHHHHh-hCcCCCCCcEEEEe-ccCCCCccccccH
Confidence            999998888889999998764                12455789999999 79999999998875 7899999999999


Q ss_pred             HHHHHHHHh
Q 019921          317 DEVRREVMS  325 (334)
Q Consensus       317 ~~l~~~~~~  325 (334)
                      ++|+++..+
T Consensus       487 ~~l~~~~~~  495 (496)
T PRK06839        487 AQLVNQLKS  495 (496)
T ss_pred             HHHHHHhhc
Confidence            999987654

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=9.1e-44  Score=340.22  Aligned_cols=291  Identities=27%  Similarity=0.365  Sum_probs=244.9

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..+++............++|.+++||+++++++++++.+.|
T Consensus       248 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~  327 (546)
T PLN02330        248 ATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKF  327 (546)
T ss_pred             HHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHc
Confidence            35678999999999999999999999999999999999999887543222211112579999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G  155 (334)
                      +++++++.||+||++.+...........                  +.....++|.|+|+++++++|++      .|+.|
T Consensus       328 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~------------------~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~G  389 (546)
T PLN02330        328 PGVQVQEAYGLTEHSCITLTHGDPEKGH------------------GIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPG  389 (546)
T ss_pred             CCCeEEecccccccccceecCCCccccc------------------cccccCccccccCCcEEEEEeCCCCccCCCCCce
Confidence            8999999999999985443221111000                  00123369999999999999854      47789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|+.++.||++++..+...++.++||+|||++++++||++++.||.+|+|+++|++|+|.+||++|.+++.|.+++
T Consensus       390 el~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  469 (546)
T PLN02330        390 ELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAA  469 (546)
T ss_pred             EEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEE
Confidence            99999999999999999998888888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |+++++...++.++++|++.+..                ....+.+.+++++ .++.+++|+.+.++ ++||+|++||++
T Consensus       470 v~~~~~~~~g~~~~a~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~~~~v-~~iP~t~~GK~~  531 (546)
T PLN02330        470 VVPLPDEEAGEIPAACVVINPKA----------------KESEEDILNFVAA-NVAHYKKVRVVQFV-DSIPKSLSGKIM  531 (546)
T ss_pred             EEeccccccCceeEEEEEECCCC----------------CCCHHHHHHHHHH-hcccccCceEEEEe-ccCCCCCCccee
Confidence            99999888888899998877641                1345778999999 79999999988765 789999999999


Q ss_pred             hHHHHHHHHhhcc
Q 019921          316 RDEVRREVMSHLK  328 (334)
Q Consensus       316 r~~l~~~~~~~~~  328 (334)
                      |++|++++....+
T Consensus       532 r~~L~~~~~~~~~  544 (546)
T PLN02330        532 RRLLKEKMLSINK  544 (546)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999977643

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.1e-44  Score=346.91  Aligned_cols=288  Identities=18%  Similarity=0.146  Sum_probs=237.2

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      ++|++|++++++++    +++..+++.++++++|++.++|++++.+.+.........++++||.+++||+++++++++++
T Consensus       324 ~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~  403 (655)
T PRK03584        324 SGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWV  403 (655)
T ss_pred             HHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHH
Confidence            46789999999763    57999999999999999999999999887643221122357899999999999999999999


Q ss_pred             HhhC-CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC----CC
Q 019921           78 TNSF-PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SS  152 (334)
Q Consensus        78 ~~~~-~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~----~g  152 (334)
                      .+.+ +++.+.+.||+||+++.+........                      ...+++|.|.++++++++|++    .|
T Consensus       404 ~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~----------------------~~~g~~g~p~~g~~~~ivd~~g~~~~g  461 (655)
T PRK03584        404 YEHVKADVWLASISGGTDICSCFVGGNPLLP----------------------VYRGEIQCRGLGMAVEAWDEDGRPVVG  461 (655)
T ss_pred             HHHhCCCceEEeccChHhhhcccccCCCCCC----------------------cCCCccCCCcCCceeEEECCCCCCCCC
Confidence            9988 36889999999998653322111100                      133468999999999999876    37


Q ss_pred             ceeEEEEcCc--chhhhhhhcccCCCC---cc-CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          153 HVGRILTRGA--HVMLRYWDQFLAKPS---VS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       153 ~~Gel~v~g~--~~~~gy~~~~~~~~~---~~-~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      +.|||+++|+  +++.||+++++.+..   .+ ..++||+|||++++|+||+++|+||.||+||++|++|+|.+||++|.
T Consensus       462 ~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~  541 (655)
T PRK03584        462 EVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVE  541 (655)
T ss_pred             CceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHH
Confidence            8899999995  789999999875431   11 12578999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      +||.|.+++|++.+++..++.++++|+++++...             .....++|++++++ .++.+++|..++++ ++|
T Consensus       542 ~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~-------------~~~~~~~l~~~~~~-~L~~~~~P~~i~~v-~~l  606 (655)
T PRK03584        542 ALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTL-------------DDALRARIRTTIRT-NLSPRHVPDKIIAV-PDI  606 (655)
T ss_pred             hCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCC-------------cHHHHHHHHHHHHh-hCCCCcCCCEEEEC-CCC
Confidence            9999999999999998888999999998765110             01224678999999 79999999998875 789


Q ss_pred             cCCCCCccchHHHHHHHHhh
Q 019921          307 PLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~~  326 (334)
                      |+|++|||+|+.|++.+.+.
T Consensus       607 P~t~sGKi~r~~lr~~~~~~  626 (655)
T PRK03584        607 PRTLSGKKVELPVKKLLHGR  626 (655)
T ss_pred             CCCCCccchHHHHHHHHcCC
Confidence            99999999999999987654

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.8e-44  Score=345.33  Aligned_cols=295  Identities=18%  Similarity=0.210  Sum_probs=238.9

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      +++++|++++++++    +++..+++.++++++|+++++|++++.+.+.........++++||.+++||+++++++++++
T Consensus       296 ~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~  375 (629)
T PRK10524        296 APLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWI  375 (629)
T ss_pred             HHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHH
Confidence            45788999998763    57899999999999999999999999887653221122357899999999999999999999


Q ss_pred             HhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeC-C-----C
Q 019921           78 TNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-G-----S  151 (334)
Q Consensus        78 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~-~-----~  151 (334)
                      .+.| ++++++.||+||++..+..........                   ...++++|.|+++++++++|+ +     .
T Consensus       376 ~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~-------------------~~~~~~~G~p~~g~~~~i~d~~~g~~~~~  435 (629)
T PRK10524        376 SEAL-GVPVIDNYWQTETGWPILAIARGVEDR-------------------PTRLGSPGVPMYGYNVKLLNEVTGEPCGP  435 (629)
T ss_pred             HHhc-CCCeEeccccccccchhhcCCCCcccC-------------------cCCCCCcccCcCCceEEEEeCCCCCCCCC
Confidence            9999 899999999999985433222111000                   013346999999999999997 3     5


Q ss_pred             CceeEEEEcCc---chhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          152 SHVGRILTRGA---HVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       152 g~~Gel~v~g~---~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                      |+.|||+++|+   +.+.+|+++++.+...+   .+++||+|||++++++||+++++||.||+||++|++|+|.+||++|
T Consensus       436 g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l  515 (629)
T PRK10524        436 NEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESI  515 (629)
T ss_pred             CCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHH
Confidence            78899999997   57889998876554322   1468999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCC
Q 019921          226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP  305 (334)
Q Consensus       226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~  305 (334)
                      .+||.|.+++|++++++..++.+++++++++.......        +......++|++++++ .++.+++|..++++ +.
T Consensus       516 ~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~--------~~~~~~~~~i~~~~~~-~l~~~~~P~~i~~v-~~  585 (629)
T PRK10524        516 SSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADR--------EARLALEKEIMALVDS-QLGAVARPARVWFV-SA  585 (629)
T ss_pred             HhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccc--------cchHHHHHHHHHHHHh-hcCCCcCCCEEEEc-CC
Confidence            99999999999999998888999999998765211100        0112345789999999 79999999998875 78


Q ss_pred             ccCCCCCccchHHHHHHHHhh
Q 019921          306 FPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       306 lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      ||+|++||++|+.|++.+.+.
T Consensus       586 lP~T~sGKi~R~~L~~~~~~~  606 (629)
T PRK10524        586 LPKTRSGKLLRRAIQAIAEGR  606 (629)
T ss_pred             CCCCCCcchHHHHHHHHHcCC
Confidence            999999999999999987654

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-43  Score=347.02  Aligned_cols=278  Identities=21%  Similarity=0.281  Sum_probs=235.1

Q ss_pred             ceeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .+++.|+++++.+ .+++..++..++++++|+++++|+++..+++....    ..+++||.+++||+++++++.+++.+.
T Consensus       208 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----~~~~slr~i~~gGe~l~~~~~~~~~~~  283 (705)
T PRK06060        208 FPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----DSFRSLRCVVSAGEALELGLAERLMEF  283 (705)
T ss_pred             HHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----ccccceeEEEEecCcCCHHHHHHHHHH
Confidence            4578899999887 47889999999999999999999999988765422    246789999999999999999999999


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCcee
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~G  155 (334)
                      |+++++++.||+||++..+........                       ..+++|+|+++++++++|++     .|+.|
T Consensus       284 ~~~~~~~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~iG~p~~~~~v~i~d~~g~~~~~g~~G  340 (705)
T PRK06060        284 FGGIPILDGIGSTEVGQTFVSNRVDEW-----------------------RLGTLGRVLPPYEIRVVAPDGTTAGPGVEG  340 (705)
T ss_pred             cCCCceEeeeeccccCceEEeccCCCC-----------------------CcCcccccCCCcEEEEECCCCCCCCCCCce
Confidence            977999999999999864432211100                       22358999999999999876     57789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|++++.||+++++.+.   ..++||+|||++++++||+++++||.||+||++|++|+|.+||++|.+|+.|.+++
T Consensus       341 El~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~  417 (705)
T PRK06060        341 DLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAA  417 (705)
T ss_pred             EEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEE
Confidence            999999999999999988653   35789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++++++..++.+++++++.......             ....+++++++++ .++.|++|..++++ ++||+|++||++
T Consensus       418 vv~~~~~~~~~~~~a~vv~~~~~~~~-------------~~~~~~i~~~l~~-~L~~~~~P~~i~~v-~~iP~t~~GKid  482 (705)
T PRK06060        418 VVAVRESTGASTLQAFLVATSGATID-------------GSVMRDLHRGLLN-RLSAFKVPHRFAVV-DRLPRTPNGKLV  482 (705)
T ss_pred             EEeecCccCCeeEEEEEEeccccCcC-------------hHHHHHHHHHHHH-hCCCCcCCcEEEEe-ecCCCCcchhhH
Confidence            99999888788899998876531100             0123578888988 79999999998876 789999999999


Q ss_pred             hHHHHHHHH
Q 019921          316 RDEVRREVM  324 (334)
Q Consensus       316 r~~l~~~~~  324 (334)
                      |++|++.+.
T Consensus       483 r~~L~~~~~  491 (705)
T PRK06060        483 RGALRKQSP  491 (705)
T ss_pred             HHHHHhhcc
Confidence            999998753

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.5e-43  Score=344.51  Aligned_cols=288  Identities=15%  Similarity=0.127  Sum_probs=233.2

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      .+|+.|++++++++    .++..++++++++++|++.++|++++.+.+.........++++||.+++||+++++++++++
T Consensus       325 ~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~  404 (652)
T TIGR01217       325 SGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWV  404 (652)
T ss_pred             HHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHH
Confidence            46789999999863    37889999999999999988888877665431111122357899999999999999999999


Q ss_pred             HhhCC-CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC----CC
Q 019921           78 TNSFP-KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SS  152 (334)
Q Consensus        78 ~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~----~g  152 (334)
                      .+.++ +..+.+.||+||+++..........                      ...+++|.|.++++++++|++    .|
T Consensus       405 ~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~----------------------~~~g~~g~p~~g~~v~ivd~~g~~~~g  462 (652)
T TIGR01217       405 YDEIKADVWLASISGGTDICSCFAGANPTLP----------------------VHIGEIQAPGLGTAVQSWDPEGKPVTG  462 (652)
T ss_pred             HHHhCCCceEEeccCHHHHhccccCCCCCCC----------------------CcCCccCCCcCCCceEEECCCCCCCCC
Confidence            99883 3567889999997543322111100                      023468999999999999876    47


Q ss_pred             ceeEEEEcCc--chhhhhhhcccCCC---CccC-CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          153 HVGRILTRGA--HVMLRYWDQFLAKP---SVST-GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       153 ~~Gel~v~g~--~~~~gy~~~~~~~~---~~~~-~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      +.|||+++|+  +++.|||++++.+.   ..+. .+|||+|||+|++|+||+++++||.||+|+++|++|+|.+||++|.
T Consensus       463 ~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~  542 (652)
T TIGR01217       463 EVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVE  542 (652)
T ss_pred             CccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHH
Confidence            8899999996  68999999998654   1222 3679999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      +||.|.+++|++++++..++.++++|+++++....             ....++|++++++ .++.+++|+.++++ +.|
T Consensus       543 ~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~-------------~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~l  607 (652)
T TIGR01217       543 RLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLD-------------DALLDRIKRTIRA-GLSPRHVPDEIIEV-PGI  607 (652)
T ss_pred             hCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCC-------------HHHHHHHHHHHHh-hCCCCcCCCEEEEC-CCC
Confidence            99999999999999998899999999987651100             1224689999999 79999999998875 779


Q ss_pred             cCCCCCccchHHHHHHHHhh
Q 019921          307 PLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~~  326 (334)
                      |+|++|||+|+.|++.+.+.
T Consensus       608 P~T~sGKi~r~~Lr~~~~~~  627 (652)
T TIGR01217       608 PHTLTGKRVEVAVKRVLQGT  627 (652)
T ss_pred             CCCCCccChHHHHHHHHcCC
Confidence            99999999999999987544

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=3.3e-43  Score=336.41  Aligned_cols=281  Identities=26%  Similarity=0.413  Sum_probs=241.3

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..+........  ..+++||.+++||+++++++.+++.+.|
T Consensus       259 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~~~~  336 (547)
T PRK13295        259 MPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG--RPVSSLRTFLCAGAPIPGALVERARAAL  336 (547)
T ss_pred             HHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC--CCcccceEEEEecCCCCHHHHHHHHHHh
Confidence            35778999999988999999999999999999999999999887654332  3578899999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       ++++++.||+||++...+........                     ....++|.|+++++++++|++     .|+.||
T Consensus       337 -~~~~~~~YG~TE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~Ge  394 (547)
T PRK13295        337 -GAKIVSAWGMTENGAVTLTKLDDPDE---------------------RASTTDGCPLPGVEVRVVDADGAPLPAGQIGR  394 (547)
T ss_pred             -CCCeEEeccCCCCCCeeeccCCCcch---------------------hccCccccccCCcEEEEECCCCCCCCCCCCCe
Confidence             89999999999998654332211100                     012358999999999999876     477899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+...  .+|||+|||+++++++|++++.||.||+++.+|++|+|.+||++|.+++.|.+++|
T Consensus       395 l~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v  472 (547)
T PRK13295        395 LQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAI  472 (547)
T ss_pred             EEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEE
Confidence            9999999999999999888765  56799999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      +++++...++.+++++++.+.                .....+++.+++++..++.+++|..++++ ++||+|.+||++|
T Consensus       473 ~~~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~lP~t~sgK~~r  535 (547)
T PRK13295        473 VAYPDERLGERACAFVVPRPG----------------QSLDFEEMVEFLKAQKVAKQYIPERLVVR-DALPRTPSGKIQK  535 (547)
T ss_pred             EeeecCCCCcEEEEEEEeCCC----------------CCCCHHHHHHHHHhccCccccCCcEEEEe-ccCCCCCCccccH
Confidence            999988888889999987654                11345678888886469999999998875 7899999999999


Q ss_pred             HHHHHHHHh
Q 019921          317 DEVRREVMS  325 (334)
Q Consensus       317 ~~l~~~~~~  325 (334)
                      ++|++.+++
T Consensus       536 ~~L~~~~~~  544 (547)
T PRK13295        536 FRLREMLRG  544 (547)
T ss_pred             HHHHHHHhc
Confidence            999998765

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-43  Score=337.87  Aligned_cols=275  Identities=26%  Similarity=0.429  Sum_probs=232.6

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++.+.+++..+++.|+++++|++.++|++++.+++.........+++++|.+++||+++++++++.|.+.|
T Consensus       257 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~  336 (537)
T PRK13382        257 LAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQF  336 (537)
T ss_pred             HHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHc
Confidence            35678999999888999999999999999999999999999876532211112356899999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       +.++++.||+||++.+++.......                      ..++++|.|++++.++++|++     .|+.||
T Consensus       337 -~~~i~~~YG~TE~~~~~~~~~~~~~----------------------~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GE  393 (537)
T PRK13382        337 -GDVIYNNYNATEAGMIATATPADLR----------------------AAPDTAGRPAEGTEIRILDQDFREVPTGEVGT  393 (537)
T ss_pred             -CCcEEecccccccCcceecChhHhc----------------------cCCCCccccCcCcEEEEECCCCCCCCCCCeeE
Confidence             7889999999999875543221100                      023369999999999999876     567899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|++++.||+  ++.+...  .++||+|||+++++++|++++.||.||+||.+|++|+|.+||++|.++|+|.+++|
T Consensus       394 l~v~g~~~~~gY~--~~~~~~~--~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v  469 (537)
T PRK13382        394 IFVRNDTQFDGYT--SGSTKDF--HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAV  469 (537)
T ss_pred             EEEEcCCcccCcc--ccchhhc--cCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEE
Confidence            9999999999998  4444433  36899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.+++..++.++++|++.++.                ....+++++++++ .++.+++|+.+.++ ++||+|++||++|
T Consensus       470 ~~~~~~~~g~~~~a~vv~~~~~----------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~~gK~~r  531 (537)
T PRK13382        470 IGVDDEQYGQRLAAFVVLKPGA----------------SATPETLKQHVRD-NLANYKVPRDIVVL-DELPRGATGKILR  531 (537)
T ss_pred             EccCccccCCEEEEEEEECCCC----------------CCCHHHHHHHHHH-hccCCCCCcEEEEe-ccCCCCCCCCCcH
Confidence            9999887788899999876541                2446789999999 79999999998876 7799999999999


Q ss_pred             HHHHH
Q 019921          317 DEVRR  321 (334)
Q Consensus       317 ~~l~~  321 (334)
                      ++|++
T Consensus       532 ~~L~~  536 (537)
T PRK13382        532 RELQA  536 (537)
T ss_pred             HhhCC
Confidence            99864

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=3.4e-43  Score=336.79  Aligned_cols=295  Identities=22%  Similarity=0.406  Sum_probs=230.6

Q ss_pred             eeeccceEEEcC-------CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHH
Q 019921            3 MLMVGACHVFIP-------KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMK   75 (334)
Q Consensus         3 ~l~~G~~~v~~~-------~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~   75 (334)
                      .+..|+++++.+       .+++..+++.|+++++|+++++|+++..|.+.......  .+++||.+++||+++++++++
T Consensus       229 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~~lr~~~~gG~~~~~~~~~  306 (552)
T PRK09274        229 GPALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGI--KLPSLRRVISAGAPVPIAVIE  306 (552)
T ss_pred             hhhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCC--CCchhhEEEecCCcCCHHHHH
Confidence            345688887754       36889999999999999999999999999887644332  578999999999999999999


Q ss_pred             HHHhhCC-CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC----
Q 019921           76 EATNSFP-KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----  150 (334)
Q Consensus        76 ~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~----  150 (334)
                      ++.+.|+ ++++++.||+||++.+++............             ........++|+|+|+++++|+|++    
T Consensus       307 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~vG~~~~~~~~~ivd~~~~~~  373 (552)
T PRK09274        307 RFRAMLPPDAEILTPYGATEALPISSIESREILFATRA-------------ATDNGAGICVGRPVDGVEVRIIAISDAPI  373 (552)
T ss_pred             HHHHHcCCCceEEccccccccceeEeecchhhhccccc-------------cccCCCCcccCccCCCceEEEEecccccc
Confidence            9999996 479999999999986544322110000000             0000022368999999999998841    


Q ss_pred             ----------CCceeEEEEcCcchhhhhhhcccCCCCcc--CCCc--eEeccceEEEcCCCcEEEeeccCceeeeCceee
Q 019921          151 ----------SSHVGRILTRGAHVMLRYWDQFLAKPSVS--TGEV--WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENV  216 (334)
Q Consensus       151 ----------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~--~~~~--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v  216 (334)
                                .|+.|||+++|+.++.||+++++.+...+  +.++  ||+|||+|++++||+++++||.||+|+++|++|
T Consensus       374 ~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v  453 (552)
T PRK09274        374 PEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTL  453 (552)
T ss_pred             ccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEE
Confidence                      47889999999999999999998887654  3455  999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccc
Q 019921          217 YPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP  296 (334)
Q Consensus       217 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p  296 (334)
                      +|.+||++|.+||+|.+++|++++++. ++.++++|++.++....            .....+.+++++..  ...++.|
T Consensus       454 ~p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~------------~~~l~~~l~~~l~~--~~~~~~~  518 (552)
T PRK09274        454 YTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGVACS------------KSALYQELRALAAA--HPHTAGI  518 (552)
T ss_pred             CcHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCccccc------------hHHHhhhhHHHHHh--cCCCcce
Confidence            999999999999999999999998764 56788888877651100            00123445555544  2455677


Q ss_pred             eEEEeccCCccCC--CCCccchHHHHHHHHhhcc
Q 019921          297 RLFVLWRKPFPLT--STGKIRRDEVRREVMSHLK  328 (334)
Q Consensus       297 ~~~~~~~~~lP~t--~~GKv~r~~l~~~~~~~~~  328 (334)
                      +.+.++ ++||+|  ++|||+|++|++++.++++
T Consensus       519 ~~~~~~-~~lP~t~~~~GKi~r~~L~~~~~~~~~  551 (552)
T PRK09274        519 ERFLIH-PSFPVDIRHNAKIFREKLAVWAAKQLK  551 (552)
T ss_pred             eEEecc-CCCCccccccccccHHHHHHHHHHhhc
Confidence            777664 789999  7999999999999988765

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-43  Score=337.62  Aligned_cols=283  Identities=31%  Similarity=0.498  Sum_probs=246.1

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +++.|+++++.+.+++..+++.++++++|++.++|++++.|++.......  .+++||.+++||+++++++.+.+.+.+ 
T Consensus       284 ~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gg~~l~~~~~~~~~~~~-  360 (573)
T PRK05605        284 AVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGV--DLSGVRNAFSGAMALPVSTVELWEKLT-  360 (573)
T ss_pred             HHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCC--CchhccEEEECCCcCCHHHHHHHHHHh-
Confidence            46779999998889999999999999999999999999999876544332  478899999999999999999999988 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-------CCcee
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-------SSHVG  155 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-------~g~~G  155 (334)
                      ++++++.||+||++.++........                      ..++++|.|++++.++++|++       .|+.|
T Consensus       361 ~~~i~~~YG~TE~~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~G  418 (573)
T PRK05605        361 GGLLVEGYGLTETSPIIVGNPMSDD----------------------RRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEG  418 (573)
T ss_pred             CCCeecccccchhchhhhcCCcccC----------------------CcCCccccCCCCCEEEEEcCCCCCccCCCCCee
Confidence            8999999999999876554322111                      023469999999999998864       36789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|+.++.||+++++.+...|. ++||+|||+++++++|++++.||.||+++.+|++|+|.+||+++..++.|.+++
T Consensus       419 el~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~  497 (573)
T PRK05605        419 ELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAA  497 (573)
T ss_pred             EEEEecCchhhhhcCChhHhhhccc-CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEE
Confidence            9999999999999999988887774 569999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++.++...++.+++++++.++                ...+.++|++++++ .++.+++|..++++ ++||+|++||++
T Consensus       498 v~~~~~~~~~~~~~~~vv~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~i~~~-~~iP~t~~GKi~  559 (573)
T PRK05605        498 VVGLPREDGSEEVVAAVVLEPG----------------AALDPEGLRAYCRE-HLTRYKVPRRFYHV-DELPRDQLGKVR  559 (573)
T ss_pred             EEeeecccCCeEEEEEEEECCC----------------CCCCHHHHHHHHHH-hCccccCCcEEEEe-ccCCCCCccccc
Confidence            9999988888889999887764                12345789999999 79999999998775 779999999999


Q ss_pred             hHHHHHHHHhhccc
Q 019921          316 RDEVRREVMSHLKS  329 (334)
Q Consensus       316 r~~l~~~~~~~~~~  329 (334)
                      |++|++++.+++++
T Consensus       560 r~~L~~~~~~~~~~  573 (573)
T PRK05605        560 RREVREELLEKLGA  573 (573)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999888753

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3e-43  Score=336.74  Aligned_cols=284  Identities=25%  Similarity=0.447  Sum_probs=242.2

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++.+|+++++.+.+++..+++.++++++|++.++|+++..++.......  ..++++|.+++||+++++++++++.+.|
T Consensus       252 ~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~--~~~~~l~~~~~gG~~~~~~~~~~~~~~~  329 (546)
T PRK08314        252 APIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAE--RDLSSLRYIGGGGAAMPEAVAERLKELT  329 (546)
T ss_pred             HHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccc--cCchhhheeeeccccCCHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999988876533222  2467899999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G  155 (334)
                       +.++++.||+||++...........                       ...++|.|+++++++++|++      .|+.|
T Consensus       330 -~~~~~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~G  385 (546)
T PRK08314        330 -GLDYVEGYGLTETMAQTHSNPPDRP-----------------------KLQCLGIPTFGVDARVIDPETLEELPPGEVG  385 (546)
T ss_pred             -CCcEEecccccccccceecCCCcCC-----------------------CCCccCcccCCeEEEEEeCCCCcCCCCCCce
Confidence             8999999999999865443221110                       22369999999999999864      46789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcc
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII  232 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~  232 (334)
                      ||+++|++++.||++++..+...|   ++.+||+|||+++++++|++++.||.||+|+++|++|+|.+||+++.++++|.
T Consensus       386 el~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~  465 (546)
T PRK08314        386 EIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQ  465 (546)
T ss_pred             EEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchh
Confidence            999999999999999988777655   34579999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCC
Q 019921          233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTG  312 (334)
Q Consensus       233 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~G  312 (334)
                      +++|++.++...++.+++++++++...              .....+.+++++++ .++.+++|..+.++ ++||+|.+|
T Consensus       466 ~~~v~~~~~~~~~~~~~a~v~~~~~~~--------------~~~~~~~l~~~~~~-~l~~~~~P~~~~~v-~~iP~t~~G  529 (546)
T PRK08314        466 EACVIATPDPRRGETVKAVVVLRPEAR--------------GKTTEEEIIAWARE-HMAAYKYPRIVEFV-DSLPKSGSG  529 (546)
T ss_pred             eEEEEeCCCcccCceeEEEEEECCCCC--------------CCCCHHHHHHHHHH-hcccCCCCcEEEEe-cCCCCCCcc
Confidence            999999999888888999998876511              01335789999999 79999999999876 779999999


Q ss_pred             ccchHHHHHHHHhhc
Q 019921          313 KIRRDEVRREVMSHL  327 (334)
Q Consensus       313 Kv~r~~l~~~~~~~~  327 (334)
                      |++|+.|++...+..
T Consensus       530 Kv~r~~L~~~~~~~~  544 (546)
T PRK08314        530 KILWRQLQEQEKARA  544 (546)
T ss_pred             ceeHHHHHHHHhhhc
Confidence            999999988766543

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.5e-44  Score=347.72  Aligned_cols=303  Identities=22%  Similarity=0.281  Sum_probs=233.0

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhcc-------------------------------
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-------------------------------   51 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------   51 (334)
                      +++.|+++++.+ .++..+++.+++++||+++++|+++..+........                               
T Consensus       290 ~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  368 (666)
T PLN02614        290 FIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEA  368 (666)
T ss_pred             HHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence            356899988875 589999999999999999999999998765321100                               


Q ss_pred             c-----------cCC-CCCccEEEeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcc
Q 019921           52 T-----------WKG-RDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF  119 (334)
Q Consensus        52 ~-----------~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~  119 (334)
                      .           ... .++||.+++||+++++++ +.+.+.++++++++.||+||+++..+.....+.            
T Consensus       369 ~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~------------  435 (666)
T PLN02614        369 SPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPDEL------------  435 (666)
T ss_pred             chHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccccC------------
Confidence            0           000 168999999999999876 556666656899999999998854332221110            


Q ss_pred             cCCCCCCCCCCCceeeccccCcceEEEeeC-C-------CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceE
Q 019921          120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSD-G-------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIG  191 (334)
Q Consensus       120 ~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~-~-------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~  191 (334)
                                ...+++|+|+|+++++|+|. +       .|+.|||+|+|++++.|||++++.|...| .+|||+|||+|
T Consensus       436 ----------~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg  504 (666)
T PLN02614        436 ----------DMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVG  504 (666)
T ss_pred             ----------CcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEE
Confidence                      02346999999999999872 2       36789999999999999999999999888 48999999999


Q ss_pred             EEcCCCcEEEeeccCceee-eCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCcccccccccc---
Q 019921          192 SIDDGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQ---  267 (334)
Q Consensus       192 ~~~~~G~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---  267 (334)
                      ++|+||+++|+||.||+|| .+|++|+|.+||++|.+||.|.+++|++...   ...++|+|++.............   
T Consensus       505 ~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~---~~~l~alvv~~~~~~~~~~~~~~~~~  581 (666)
T PLN02614        505 EWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSF---ESFLVAIANPNQQILERWAAENGVSG  581 (666)
T ss_pred             EEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEeCCHHHHHHHHHhcCCCc
Confidence            9999999999999999999 5799999999999999999999999999643   23588888876542111000000   


Q ss_pred             -----ccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc-----CCCCCccchHHHHHHHHhhcccCCCC
Q 019921          268 -----SSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       268 -----~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~l~~~  333 (334)
                           ....+......+++.+..++..|+.|.+++.+.+..++|-     .|+++|+.|..+.+.|.+.|+++|..
T Consensus       582 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly~~  657 (666)
T PLN02614        582 DYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKT  657 (666)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHHHh
Confidence                 0011112222344555555457999999999998766664     89999999999999999999999974

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-43  Score=332.60  Aligned_cols=280  Identities=29%  Similarity=0.504  Sum_probs=241.5

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +++.|+++++.+.+++..+++.++++++|.+.++|+++..++.......  ..++++|.+++||+++++++++++.+.|+
T Consensus       212 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~--~~~~~l~~~~~gG~~~~~~~~~~~~~~~~  289 (497)
T PRK06145        212 VLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDR--FDLDSLAWCIGGGEKTPESRIRDFTRVFT  289 (497)
T ss_pred             HHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccc--cccccceEEEecCCCCCHHHHHHHHHHcC
Confidence            4678999999988999999999999999999999999999887644322  24678999999999999999999999998


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      +.++++.||+||++...+........                     ...+++|.|++++++++.+++     .++.|||
T Consensus       290 ~~~v~~~YG~tE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel  348 (497)
T PRK06145        290 RARYIDAYGLTETCSGDTLMEAGREI---------------------EKIGSTGRALAHVEIRIADGAGRWLPPNMKGEI  348 (497)
T ss_pred             CCceEEeecCcccCCcceeccCcccc---------------------ccCCCcccCCCCceEEEECCCCCCCCCCCceEE
Confidence            89999999999999755432211100                     022358999999999999865     4778999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|++++.||+++++.+...| .++||+|||+++++++|+++++||.||+|+.+|++++|.+||++|.++++|.+++|+
T Consensus       349 ~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~  427 (497)
T PRK06145        349 CMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVI  427 (497)
T ss_pred             EEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEE
Confidence            9999999999999988887776 468999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +..++..++.+++++++.+.                ......++.+++++ .++.+++|..+.++ ++||+|++||++|+
T Consensus       428 ~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~iP~t~~GKi~r~  489 (497)
T PRK06145        428 GVHDDRWGERITAVVVLNPG----------------ATLTLEALDRHCRQ-RLASFKVPRQLKVR-DELPRNPSGKVLKR  489 (497)
T ss_pred             ecCCCccCceEEEEEEECCC----------------CCCCHHHHHHHHHH-hhhcCCCCCEEEEe-ccCCCCCcccccHH
Confidence            99988778889998887654                12346789999999 79999999988765 88999999999999


Q ss_pred             HHHHHHH
Q 019921          318 EVRREVM  324 (334)
Q Consensus       318 ~l~~~~~  324 (334)
                      +|+++++
T Consensus       490 ~l~~~~~  496 (497)
T PRK06145        490 VLRDELN  496 (497)
T ss_pred             HHHHHhc
Confidence            9998764

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=5.4e-43  Score=326.68  Aligned_cols=271  Identities=27%  Similarity=0.434  Sum_probs=224.4

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++.+..+..........+++|+++++|+++..+.+..   .  ..+++||.+++||+++++++.+.+.+ +
T Consensus       180 ~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~--~~l~~l~~i~~gG~~l~~~~~~~~~~-~  253 (452)
T PRK07445        180 RSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---P--QWLAQFRTILLGGAPAWPSLLEQARQ-L  253 (452)
T ss_pred             HHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---h--hhhhcceEEEECCccCCHHHHHHHHh-c
Confidence            4678899999987432332234445789999999999999887621   1  23678999999999999999998876 4


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcC
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG  161 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g  161 (334)
                       ++++++.||+||++..+......+..                     ....++|.|+|+++++++   .++.|||+++|
T Consensus       254 -~~~l~~~YG~TE~~~~~~~~~~~~~~---------------------~~~~~~G~~~p~~~v~i~---~g~~Gel~v~g  308 (452)
T PRK07445        254 -QLRLAPTYGMTETASQIATLKPDDFL---------------------AGNNSSGQVLPHAQITIP---ANQTGNITIQA  308 (452)
T ss_pred             -CCeEecCcchhhhcccccccCchhhc---------------------cCCCcCCccCCCCeEEEc---CCCcceEEEeC
Confidence             89999999999998654332211100                     022358999999999997   45679999999


Q ss_pred             cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEec
Q 019921          162 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN  241 (334)
Q Consensus       162 ~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  241 (334)
                      ++++.||++++.      ..++||+|||++++|+||++++.||.||+|+++|++|+|.+||++|.+||+|.+++|++.++
T Consensus       309 ~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~  382 (452)
T PRK07445        309 QSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPD  382 (452)
T ss_pred             CccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccC
Confidence            999999997532      24689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHHHH
Q 019921          242 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR  321 (334)
Q Consensus       242 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~  321 (334)
                      +..++.++++++..+.                 ..+.+++++++++ .++.|++|+.++++ ++||+|++||++|++|++
T Consensus       383 ~~~g~~~~a~vv~~~~-----------------~~~~~~l~~~~~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~r~~L~~  443 (452)
T PRK07445        383 PHWGEVVTAIYVPKDP-----------------SISLEELKTAIKD-QLSPFKQPKHWIPV-PQLPRNPQGKINRQQLQQ  443 (452)
T ss_pred             cCCCcEEEEEEEeCCC-----------------CCCHHHHHHHHHH-hCCcccCCeEEEEe-cCCCCCCCcccCHHHHHH
Confidence            8888889999887653                 1345789999999 79999999998875 779999999999999999


Q ss_pred             HHHhhcc
Q 019921          322 EVMSHLK  328 (334)
Q Consensus       322 ~~~~~~~  328 (334)
                      ++.++|+
T Consensus       444 ~~~~~~~  450 (452)
T PRK07445        444 IAVQRLG  450 (452)
T ss_pred             HHHHhhC
Confidence            9999876

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7e-43  Score=328.32  Aligned_cols=273  Identities=25%  Similarity=0.372  Sum_probs=235.6

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      +++..|+++++.+.+++..+++.++ +++|.+.++|+++..+.+....   ...++++|.+++||+++++++++++.+.+
T Consensus       190 ~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~---~~~l~~l~~~~~gg~~~~~~~~~~~~~~~  265 (471)
T PRK07787        190 GPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA---ARALRGARLLVSGSAALPVPVFDRLAALT  265 (471)
T ss_pred             HHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc---cccccceeEEEECCCCCCHHHHHHHHHHc
Confidence            4578899999998899999999999 9999999999999988864322   12467899999999999999999999988


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CC-ce
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SS-HV  154 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g-~~  154 (334)
                       +.++++.||+||++...+..... .                      ..+.++|.|+++++++++|++      .+ +.
T Consensus       266 -~~~~~~~YG~tE~~~~~~~~~~~-~----------------------~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~  321 (471)
T PRK07787        266 -GHRPVERYGMTETLITLSTRADG-E----------------------RRPGWVGLPLAGVETRLVDEDGGPVPHDGETV  321 (471)
T ss_pred             -CCCeecccCccccCcceecCCCC-c----------------------ccCCcccccCCCcEEEEECCCCCCCCCCCCCc
Confidence             88999999999998643322110 0                      023369999999999999876      23 37


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeecc-CceeeeCceeeChHHHHHHHhcCCCcce
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHPGIIG  233 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~  233 (334)
                      |||+++|++++.||+++++.+...|..++||+|||++++++||+++++||. ||+++.+|++++|.+||++|..++.|.+
T Consensus       322 Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~  401 (471)
T PRK07787        322 GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVRE  401 (471)
T ss_pred             eEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcce
Confidence            999999999999999999999988877899999999999999999999996 8999999999999999999999999999


Q ss_pred             EEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCc
Q 019921          234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGK  313 (334)
Q Consensus       234 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK  313 (334)
                      ++|++.++...++.+++++++...                  ...+++.+++++ .++.+++|..++++ ++||+|++||
T Consensus       402 ~~v~~~~~~~~~~~~~a~v~~~~~------------------~~~~~l~~~l~~-~l~~~~~P~~i~~~-~~iP~~~~GK  461 (471)
T PRK07787        402 AAVVGVPDDDLGQRIVAYVVGADD------------------VAADELIDFVAQ-QLSVHKRPREVRFV-DALPRNAMGK  461 (471)
T ss_pred             EEEEcccccccCeEEEEEEEeCCC------------------CCHHHHHHHHHh-hcccccCCcEEEEe-ccCCCCCCcc
Confidence            999999988878889999887332                  456779999999 79999999988775 7899999999


Q ss_pred             cchHHHHHH
Q 019921          314 IRRDEVRRE  322 (334)
Q Consensus       314 v~r~~l~~~  322 (334)
                      ++|+.|+++
T Consensus       462 i~r~~L~~~  470 (471)
T PRK07787        462 VLKKQLLSE  470 (471)
T ss_pred             ccHHHhccC
Confidence            999999764

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.8e-43  Score=329.79  Aligned_cols=275  Identities=26%  Similarity=0.482  Sum_probs=236.4

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++.+.+++..+++.++++++|+++++|+++..|.+..   .   ...+.+.++++|++++.++.+++.+.|
T Consensus       204 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~---~~~~~~~~~~~G~~l~~~~~~~~~~~~  277 (487)
T PRK07638        204 STLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN---R---VIENKMKIISSGAKWEAEAKEKIKNIF  277 (487)
T ss_pred             HHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc---C---cCCceeEEEEcCCCCCHHHHHHHHHHc
Confidence            4678999999999999999999999999999999999999987662   1   134566778899999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                      +++++++.||+||++.++........                      ..+.++|.|+++++++++|++     .|+.||
T Consensus       278 ~~~~~~~~YG~tE~~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Ge  335 (487)
T PRK07638        278 PYAKLYEFYGASELSFVTALVDEESE----------------------RRPNSVGRPFHNVQVRICNEAGEEVQKGEIGT  335 (487)
T ss_pred             CCCeEEEEecCCccCceEEecccccC----------------------CCCCCCCcccCCcEEEEECCCCCCCCCCCCeE
Confidence            89999999999999965443321110                      033469999999999999876     578899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+...+ .++||+|||+++++++|++++.||.+|+|+.+|++|+|.+||+++.++|+|.+++|
T Consensus       336 l~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v  414 (487)
T PRK07638        336 VYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVV  414 (487)
T ss_pred             EEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEE
Confidence            99999999999999987665543 57899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.+++..++.+++++...                    ...+++++++++ .++.+++|..++++ ++||+|++||++|
T Consensus       415 ~~~~~~~~g~~~~~~v~~~--------------------~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~iP~t~~GKv~r  472 (487)
T PRK07638        415 IGVPDSYWGEKPVAIIKGS--------------------ATKQQLKSFCLQ-RLSSFKIPKEWHFV-DEIPYTNSGKIAR  472 (487)
T ss_pred             EecCchhcCCeeEEEEECC--------------------CCHHHHHHHHHH-HhhcccCCcEEEEe-cccCCCCcccccH
Confidence            9999887788888887631                    345788899999 79999999998775 7799999999999


Q ss_pred             HHHHHHHHhhc
Q 019921          317 DEVRREVMSHL  327 (334)
Q Consensus       317 ~~l~~~~~~~~  327 (334)
                      ++|++++.+.-
T Consensus       473 ~~L~~~~~~~~  483 (487)
T PRK07638        473 MEAKSWIENQE  483 (487)
T ss_pred             HHHHHHHhccc
Confidence            99998876543

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-43  Score=331.88  Aligned_cols=285  Identities=28%  Similarity=0.512  Sum_probs=247.3

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+..++..+++.++++++|++.++|+++..+++......  ..++++|.+++||++++.++.+.+++.|+
T Consensus       234 ~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~gg~~~~~~~~~~~~~~~~  311 (523)
T PRK08316        234 YLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDT--RDLSSLRKGYYGASIMPVEVLKELRERLP  311 (523)
T ss_pred             HHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccccc--CCcccceEEEEcCCcCCHHHHHHHHHHcC
Confidence            4678999999988999999999999999999999999998887643322  25789999999999999999999999998


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      ++++++.||+||++.+++........                     ...+++|+|+++++++++|++     .|+.||+
T Consensus       312 ~~~~~~~YG~tE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei  370 (523)
T PRK08316        312 GLRFYNCYGQTEIAPLATVLGPEEHL---------------------RRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEI  370 (523)
T ss_pred             CCceeeeecccccCccccccCccccc---------------------cccCCcccCCCCcEEEEEcCCCCCCCCCCcceE
Confidence            89999999999998765543322110                     023468999999999998865     5778999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|+.++.+|+++++.+...| .++||+|||+|++++||.+++.||.||+|+++|++++|.+||+.+.++++|.+++|+
T Consensus       371 ~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~  449 (523)
T PRK08316        371 VHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVI  449 (523)
T ss_pred             EEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEe
Confidence            9999999999999988887776 578999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +++++..++.+++++++++.                .....+.+.+++++ .++.+++|..++++ +++|+|++||++|+
T Consensus       450 ~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~~p~t~~gKi~r~  511 (523)
T PRK08316        450 GLPDPKWIEAVTAVVVPKAG----------------ATVTEDELIAHCRA-RLAGFKVPKRVIFV-DELPRNPSGKILKR  511 (523)
T ss_pred             cccCcccCCeEEEEEEECCC----------------CCCCHHHHHHHHHH-hcccCCCCcEEEEe-cCCCCCCccceeHH
Confidence            99998888889999987764                11345778889998 79999999998876 78999999999999


Q ss_pred             HHHHHHHhhccc
Q 019921          318 EVRREVMSHLKS  329 (334)
Q Consensus       318 ~l~~~~~~~~~~  329 (334)
                      +|++.|.+.+++
T Consensus       512 ~l~~~~~~~~~~  523 (523)
T PRK08316        512 ELRERYAGAFTD  523 (523)
T ss_pred             HHHHHHHhhccC
Confidence            999999887753

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=7.4e-43  Score=332.62  Aligned_cols=276  Identities=27%  Similarity=0.441  Sum_probs=236.9

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..+.+......  ..++++|.+++||+++++++++++.+.+
T Consensus       246 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~  323 (527)
T TIGR02275       246 GVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR--YDLSSLKLLQVGGAKFSEAAARRVPAVF  323 (527)
T ss_pred             HHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC--CCccceEEEEEcCCCCCHHHHHHHHHHh
Confidence            35677999999888999999999999999999999999998887654322  3578999999999999999999999998


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeecccc-CcceEEEeeCC-----CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~-----~g~~G  155 (334)
                       ++++++.||+||++...+...  ....                    ....++|.|+ ++..++++|++     .|+.|
T Consensus       324 -g~~~~~~YG~tE~~~~~~~~~--~~~~--------------------~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~G  380 (527)
T TIGR02275       324 -GCQLQQVFGMAEGLVNYTRLD--DPAE--------------------IIFTTQGRPMSPDDEVRVVDDHGNPVAPGETG  380 (527)
T ss_pred             -CCeEEeeeccCccCccccCCC--Cccc--------------------cccccCCCCCCCCceEEEECCCCCCCCCCCce
Confidence             899999999999653322111  1000                    0223589999 48899998865     57889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|++++.||+++++.+...++.++||+|||+++++++|++++.||.+|+|+.+|++|+|.+||++|.++|+|.+++
T Consensus       381 ei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~  460 (527)
T TIGR02275       381 MLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAA  460 (527)
T ss_pred             EEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEE
Confidence            99999999999999999999888888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++.++...++.++++|++++.                 .....++++++++..++.+++|..+.++ ++||+|++||++
T Consensus       461 v~~~~~~~~~~~~~a~vv~~~~-----------------~~~~~~l~~~l~~~~l~~~~~P~~i~~v-~~iP~t~sGKv~  522 (527)
T TIGR02275       461 LVSMPDELLGEKSCAFIVVRDP-----------------ALKAAQLRRFLRERGLAEYKLPDRVEFI-DSLPLTAVGKID  522 (527)
T ss_pred             EEecCCcccccEEEEEEEECCC-----------------CCCHHHHHHHHHhCCCccccCCCEEEEe-ccCCCCCcccee
Confidence            9999998878889999887654                 1446789999988459999999998876 779999999999


Q ss_pred             hHHHH
Q 019921          316 RDEVR  320 (334)
Q Consensus       316 r~~l~  320 (334)
                      |+.|+
T Consensus       523 r~~L~  527 (527)
T TIGR02275       523 KKALR  527 (527)
T ss_pred             HHhcC
Confidence            99874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.6e-43  Score=344.55  Aligned_cols=303  Identities=23%  Similarity=0.239  Sum_probs=233.5

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhc--------------------------------
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVK--------------------------------   50 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~--------------------------------   50 (334)
                      +++.|+++++.+ +++..+++.|+++++|+++++|+++..+.......                                
T Consensus       287 ~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~  365 (660)
T PLN02861        287 CISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEA  365 (660)
T ss_pred             HHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCc
Confidence            567899988874 68999999999999999999999999876421000                                


Q ss_pred             -ccc---------CCC-CCccEEEeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcc
Q 019921           51 -KTW---------KGR-DSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF  119 (334)
Q Consensus        51 -~~~---------~~~-~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~  119 (334)
                       ...         ..+ .++|.+++||+++++++.+ |.+.++...+++.||+||+++.++.......            
T Consensus       366 ~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------------  432 (660)
T PLN02861        366 SPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVF------------  432 (660)
T ss_pred             cHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccC------------
Confidence             000         011 5799999999999999865 5556634579999999999865443221110            


Q ss_pred             cCCCCCCCCCCCceeeccccCcceEEEeeCC--------CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceE
Q 019921          120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIG  191 (334)
Q Consensus       120 ~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~--------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~  191 (334)
                                ...+++|.|+|+++++++|.+        .++.|||+++|++++.|||++++.|...| .+|||+|||+|
T Consensus       433 ----------~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg  501 (660)
T PLN02861        433 ----------SMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIG  501 (660)
T ss_pred             ----------CCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceE
Confidence                      023479999999999998721        23579999999999999999999999888 48999999999


Q ss_pred             EEcCCCcEEEeeccCceeee-CceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccc-c
Q 019921          192 SIDDGGNVWLVGRRNGRIKS-GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQS-S  269 (334)
Q Consensus       192 ~~~~~G~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~  269 (334)
                      ++|+||+++|+||.||+||. +|++|+|.+||++|.+||.|.+++|++.+.   ++.++|+|++.............. .
T Consensus       502 ~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~~~~~~~~~~~  578 (660)
T PLN02861        502 EWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALEDWAANNNKTG  578 (660)
T ss_pred             EECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHHHHHHHcCCCC
Confidence            99999999999999999995 899999999999999999999999999752   356888888764311110000000 0


Q ss_pred             c-------hhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc-----cCCCCCccchHHHHHHHHhhcccCCCC
Q 019921          270 K-------NKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF-----PLTSTGKIRRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       270 ~-------~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l-----P~t~~GKv~r~~l~~~~~~~~~~l~~~  333 (334)
                      .       .+......+++++..+++.++.+..++.+.+..++|     .+|+++|+.|+.+++.|.++|+++|.+
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY~~  654 (660)
T PLN02861        579 DFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLYSE  654 (660)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            0       111223345555555555689999999998876778     899999999999999999999999975

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-42  Score=332.55  Aligned_cols=286  Identities=33%  Similarity=0.551  Sum_probs=244.3

Q ss_pred             eeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            3 MLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         3 ~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      ++..|+++++.. .+++..+++.++++++|++.++|+++..++.......  ..++++|.+++||+++++++++++.+.+
T Consensus       264 ~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--~~~~~lr~i~~~G~~~~~~~~~~~~~~~  341 (558)
T PRK12583        264 CMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGN--FDLSSLRTGIMAGAPCPIEVMRRVMDEM  341 (558)
T ss_pred             HHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccC--CCchhheEEEecCCCCCHHHHHHHHHHc
Confidence            467888888654 5889999999999999999999999988776543322  2578999999999999999999999988


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                      ++..+++.||+||++..++.........                    ....++|.|++++.++++|++     .|+.||
T Consensus       342 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~--------------------~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~Ge  401 (558)
T PRK12583        342 HMAEVQIAYGMTETSPVSLQTTAADDLE--------------------RRVETVGRTQPHLEVKVVDPDGATVPRGEIGE  401 (558)
T ss_pred             CCcceeccccccccccceeccCcccccc--------------------cccCCCCccCCCCeEEEECCCCCCCCCCCeeE
Confidence            6678999999999997655432211100                    023469999999999999876     577899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||++++..+...+..++||+|||++++++||++++.||.||+|+++|.+|+|.+||++|.+++.|.+++|
T Consensus       402 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v  481 (558)
T PRK12583        402 LCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQV  481 (558)
T ss_pred             EEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence            99999999999999998888777778999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      +++++...++.+++++++.++                ......+++.++++ .++.+++|..++++ ++||+|++||++|
T Consensus       482 ~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~i~~~~~~-~L~~~~~P~~i~~v-~~lP~t~sGK~~r  543 (558)
T PRK12583        482 FGVPDEKYGEEIVAWVRLHPG----------------HAASEEELREFCKA-RIAHFKVPRYFRFV-DEFPMTVTGKVQK  543 (558)
T ss_pred             EeeecCCCCcEEEEEEEECCC----------------CCCCHHHHHHHHHh-hcccCcCCcEEEEe-ccCCCCCCCCccH
Confidence            999988778888999987764                12346789999998 79999999988775 7899999999999


Q ss_pred             HHHHHHHHhhcc
Q 019921          317 DEVRREVMSHLK  328 (334)
Q Consensus       317 ~~l~~~~~~~~~  328 (334)
                      +.|+++..+++.
T Consensus       544 ~~L~~~~~~~~~  555 (558)
T PRK12583        544 FRMREISIEELA  555 (558)
T ss_pred             HHHHHHHHhhcC
Confidence            999999887654

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.9e-42  Score=329.10  Aligned_cols=284  Identities=26%  Similarity=0.408  Sum_probs=243.6

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      +++..|+++++.+.+++..++++++++++|++.++|+++..|++..........++++|.+++||+++++++.+.+.+.+
T Consensus       245 ~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~  324 (536)
T PRK10946        245 GVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL  324 (536)
T ss_pred             HHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc
Confidence            35778999999888999999999999999999999999999987643322223467899999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeecccc-CcceEEEeeCC-----CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~-----~g~~G  155 (334)
                       ++++++.||+||+....+..  .....                    ....++|.|+ |++.++++|++     .|+.|
T Consensus       325 -g~~~~~~YG~tE~~~~~~~~--~~~~~--------------------~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~G  381 (536)
T PRK10946        325 -GCQLQQVFGMAEGLVNYTRL--DDSDE--------------------RIFTTQGRPMSPDDEVWVADADGNPLPQGEVG  381 (536)
T ss_pred             -CCeEEEeecccccceeeecC--CCccc--------------------cccccCCcccCCCceEEEECCCCCCCCCCCcc
Confidence             89999999999965332211  11100                    0233689998 78999998865     67889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|+.++.||+++++.+...+..++||+|||++++|++|++++.||.+|+++.+|++++|.+||++|.+++.|.+++
T Consensus       382 el~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~  461 (536)
T PRK10946        382 RLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAA  461 (536)
T ss_pred             EEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEE
Confidence            99999999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++.+++..++.+++++++++.                  ...+++++++++..++.|++|..+.++ +++|+|++||++
T Consensus       462 v~~~~~~~~g~~~~a~vv~~~~------------------~~~~~l~~~~~~~~l~~~~~P~~~~~~-~~iP~t~~GKv~  522 (536)
T PRK10946        462 LVSMEDELMGEKSCAFLVVKEP------------------LKAVQLRRFLREQGIAEFKLPDRVECV-DSLPLTAVGKVD  522 (536)
T ss_pred             EEcCCCcccCceEEEEEEeCCC------------------CCHHHHHHHHHhCCccccccCcEEEEe-ccCCCCCCCccc
Confidence            9999998778888888887653                  345688899987349999999999876 779999999999


Q ss_pred             hHHHHHHHHhhc
Q 019921          316 RDEVRREVMSHL  327 (334)
Q Consensus       316 r~~l~~~~~~~~  327 (334)
                      |++|++++.+..
T Consensus       523 r~~L~~~~~~~~  534 (536)
T PRK10946        523 KKQLRQWLASRA  534 (536)
T ss_pred             HHHHHHHHHhhc
Confidence            999999987764

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-42  Score=330.81  Aligned_cols=287  Identities=25%  Similarity=0.388  Sum_probs=237.8

Q ss_pred             eeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            3 MLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         3 ~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      +++.|+++++.+  .+++..+++.++++++|.++++|+++..+.+...........+++|.++++|+++++++++++.+.
T Consensus       239 ~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~  318 (534)
T PRK05852        239 TLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTE  318 (534)
T ss_pred             HHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHH
Confidence            456788887754  478999999999999999999999999998765433222346789999999999999999999999


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCcee
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~G  155 (334)
                      | ++++++.||+||++..++............  .             ....+..|. .++++++++|++     .|+.|
T Consensus       319 ~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~--~-------------~~~~g~~g~-~~g~~~~i~d~~g~~~~~g~~G  381 (534)
T PRK05852        319 F-AAPVVCAFGMTEATHQVTTTQIEGIGQTEN--P-------------VVSTGLVGR-STGAQIRIVGSDGLPLPAGAVG  381 (534)
T ss_pred             h-CCChhhccCccccchhhhcCCccccccccC--c-------------ccccccCCC-CCCCeEEEECCCCCCCCCCCce
Confidence            9 899999999999987554332211000000  0             001123344 689999999876     57889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|+.++.||+++++.+...+ .++||+|||++++|+||++++.||.+|+|+.+|.+++|.+||++|.++|+|.+++
T Consensus       382 el~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~  460 (534)
T PRK05852        382 EVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAA  460 (534)
T ss_pred             EEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEE
Confidence            999999999999999999988877 4789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |+++++...++.++++++.++.                .....+++.+++++ .++.+++|..+.++ ++||+|++||++
T Consensus       461 v~g~~~~~~g~~~~~~vv~~~~----------------~~~~~~~i~~~~~~-~l~~~~~P~~i~~v-~~iP~t~~GKi~  522 (534)
T PRK05852        461 VFGVPDQLYGEAVAAVIVPRES----------------APPTAEELVQFCRE-RLAAFEIPASFQEA-SGLPHTAKGSLD  522 (534)
T ss_pred             EEecCCcCcCceEEEEEEECCC----------------CCCCHHHHHHHHHH-hcccccCCeEEEEh-hhcCCCCCcccc
Confidence            9999988878888888886553                12456789999999 79999999998775 789999999999


Q ss_pred             hHHHHHHHHh
Q 019921          316 RDEVRREVMS  325 (334)
Q Consensus       316 r~~l~~~~~~  325 (334)
                      |++|++.+..
T Consensus       523 r~~L~~~~~~  532 (534)
T PRK05852        523 RRAVAEQFGH  532 (534)
T ss_pred             HHHHHHHhcc
Confidence            9999998865

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-42  Score=330.20  Aligned_cols=279  Identities=30%  Similarity=0.511  Sum_probs=241.8

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+..++..+++.|+++++|++.++|+++..+.+.......  .++++|.+++||+++++++++++.+.|
T Consensus       228 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--~~~~l~~v~~~g~~~~~~~~~~~~~~~  305 (513)
T PRK07656        228 APLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAE--DLSSLRLAVTGAASMPVALLERFESEL  305 (513)
T ss_pred             HHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCC--CccceeeEEecCCCCCHHHHHHHHHHc
Confidence            467889999998888999999999999999999999999999877544332  578999999999999999999999999


Q ss_pred             CCC-ceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCcee
Q 019921           82 PKA-KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        82 ~~~-~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~G  155 (334)
                       ++ .+++.||+||++++++.+.......                    ..+.++|.|+++++++++|++     .|+.|
T Consensus       306 -~~~~~~~~YG~tE~~~~~~~~~~~~~~~--------------------~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~G  364 (513)
T PRK07656        306 -GVDIVLTGYGLSEASGVTTFNRLDDDRK--------------------TVAGTIGTAIAGVENKIVNELGEEVPVGEVG  364 (513)
T ss_pred             -CCCceEeEEccccCCCceeecCcccccc--------------------ccCCCccccCCCcEEEEECCCCCCCCCCCce
Confidence             66 9999999999987665443321110                    013369999999999999865     46789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|+.++.||++++..+...+.+++||+|||+++++++|.++++||.||+++++|.+++|.+||++|.++++|.+++
T Consensus       365 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~  444 (513)
T PRK07656        365 ELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAA  444 (513)
T ss_pred             EEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEE
Confidence            99999999999999998888887777899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++.++...++.+.++++.++.                ...+.+++.+++++ .++.+.+|..+.++ ++||+|++||++
T Consensus       445 v~~~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~iP~t~~gK~~  506 (513)
T PRK07656        445 VIGVPDERLGEVGKAYVVLKPG----------------AELTEEELIAYCRE-HLAKYKVPRSIEFL-DELPKNATGKVL  506 (513)
T ss_pred             EEecCCcccCceEEEEEEECCC----------------CCCCHHHHHHHHHh-hcccccCCCEEEEe-cCCCCCCcccee
Confidence            9999988878888888887653                12456789999999 79999999998875 789999999999


Q ss_pred             hHHHHH
Q 019921          316 RDEVRR  321 (334)
Q Consensus       316 r~~l~~  321 (334)
                      |+.|++
T Consensus       507 r~~l~~  512 (513)
T PRK07656        507 KRALRE  512 (513)
T ss_pred             HHHHhc
Confidence            999875

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.8e-42  Score=330.91  Aligned_cols=287  Identities=32%  Similarity=0.520  Sum_probs=244.0

Q ss_pred             ceeeccceEEEc-CCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++. ..+++..+++.++++++|.++++|+++..++.......  ..+++||.+++||+++++++++.+.+.
T Consensus       261 ~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~--~~~~~lr~~~~~G~~~~~~~~~~~~~~  338 (559)
T PRK08315        261 ACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFAR--FDLSSLRTGIMAGSPCPIEVMKRVIDK  338 (559)
T ss_pred             HHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCC--CCchhhheeEecCCCCCHHHHHHHHHH
Confidence            356789998854 46899999999999999999999999988876543322  257899999999999999999999999


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCce
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHV  154 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~  154 (334)
                      ++..++++.||+||++.+++.........                    ..+.++|.|+|++.++++|++      .|+.
T Consensus       339 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~--------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~  398 (559)
T PRK08315        339 MHMSEVTIAYGMTETSPVSTQTRTDDPLE--------------------KRVTTVGRALPHLEVKIVDPETGETVPRGEQ  398 (559)
T ss_pred             cCCcceeEEEcccccccceeecCcccchh--------------------hccCCCCccCCCcEEEEEcCccCCcCCCCCc
Confidence            85566999999999987554333221110                    023469999999999999876      5788


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceE
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI  234 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  234 (334)
                      |||+|+|++++.||++++..+...+..++||+|||+++++++|.++++||.||+++.+|+++++.+||++|.++++|.++
T Consensus       399 GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~  478 (559)
T PRK08315        399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDV  478 (559)
T ss_pred             eEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEE
Confidence            99999999999999999988888777789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCcc
Q 019921          235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI  314 (334)
Q Consensus       235 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv  314 (334)
                      +|++++++..++.++++|++.+.                ......++++++++ .++.|++|..+.++ ++||+|++||+
T Consensus       479 ~v~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~~GK~  540 (559)
T PRK08315        479 QVVGVPDEKYGEEVCAWIILRPG----------------ATLTEEDVRDFCRG-KIAHYKIPRYIRFV-DEFPMTVTGKI  540 (559)
T ss_pred             EEEecCCCCCCeEEEEEEEeCCC----------------CCCCHHHHHHHHHh-hcccccCCcEEEEc-ccCCCCCCCce
Confidence            99999988777888888887654                12346789999998 79999999998875 78999999999


Q ss_pred             chHHHHHHHHhhcc
Q 019921          315 RRDEVRREVMSHLK  328 (334)
Q Consensus       315 ~r~~l~~~~~~~~~  328 (334)
                      +|.+|++++....+
T Consensus       541 ~r~~L~~~~~~~~~  554 (559)
T PRK08315        541 QKFKMREMMIEELG  554 (559)
T ss_pred             eHHHHHHHHHhhhc
Confidence            99999999877654

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-42  Score=328.49  Aligned_cols=283  Identities=27%  Similarity=0.486  Sum_probs=243.0

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +++.|+++++.+.+++..+++.++++++|+++++|+++..+++......  ..++++|.+++||++++++..+.+.+.+ 
T Consensus       229 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--~~l~~lr~~~~gg~~~~~~~~~~~~~~~-  305 (524)
T PRK06188        229 TLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRT--RDLSSLETVYYGASPMSPVRLAEAIERF-  305 (524)
T ss_pred             HHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccC--CCCcceeEEEEcCCCCCHHHHHHHHHHh-
Confidence            5678999999999999999999999999999999999999887754333  2578999999999999999999999888 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      +..+++.||+||++..++...........                 .....++|.|+|++.+++++++     .|+.|||
T Consensus       306 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~-----------------~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel  368 (524)
T PRK06188        306 GPIFAQYYGQTEAPMVITYLRKRDHDPDD-----------------PKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEI  368 (524)
T ss_pred             CchhhheeCccccCCceeecCchhccccc-----------------cccCCccccccCCcEEEEEcCCCCCCCCCCeeEE
Confidence            78899999999997655543322110000                 0133468999999999999876     5778999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|+.++.||++++..+...+ .++||+|||++++++||+++++||.+|+++++|++++|.+||++|.++++|.+++|+
T Consensus       369 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~  447 (524)
T PRK06188        369 CVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVI  447 (524)
T ss_pred             EEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEE
Confidence            9999999999999988887776 578999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +.+++..++.+++++++.+.                .....+++++++++ .++.+++|..++++ ++||+|++||++|+
T Consensus       448 ~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~~P~t~~gKi~r~  509 (524)
T PRK06188        448 GVPDEKWGEAVTAVVVLRPG----------------AAVDAAELQAHVKE-RKGSVHAPKQVDFV-DSLPLTALGKPDKK  509 (524)
T ss_pred             eccCCCcCceEEEEEEECCC----------------CCCCHHHHHHHHHH-hcccCCCCcEEEEe-cCCCCCccccccHH
Confidence            99888778889999988764                12346789999999 79999999998875 78999999999999


Q ss_pred             HHHHHHH
Q 019921          318 EVRREVM  324 (334)
Q Consensus       318 ~l~~~~~  324 (334)
                      +|++.+.
T Consensus       510 ~L~~~~~  516 (524)
T PRK06188        510 ALRARYW  516 (524)
T ss_pred             HHHHHHH
Confidence            9999873

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-42  Score=324.51  Aligned_cols=282  Identities=28%  Similarity=0.477  Sum_probs=237.3

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHH--hhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            3 MLMVGACHVFIPKFESKSALEAVE--QHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~--~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      ++..|+++++.+.+++..++..+.  ++++|.++++|+++..+........  ..+++||.+++||++++.+..+.+.+.
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~gG~~~~~~~~~~~~~~  275 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDA--AALRHLTALFTGGAPHAAEDILGWLDD  275 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCc--cccccceEEEecCCCCCHHHHHHHHHh
Confidence            466799999988899999998886  4899999999999988875432211  246789999999999999998888764


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCcee
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~G  155 (334)
                        ++++++.||+||++..+.........                    ...++++|.|.|+++++++|++     .|+.|
T Consensus       276 --g~~v~~~YG~TE~~~~~~~~~~~~~~--------------------~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~G  333 (488)
T PRK09088        276 --GIPMVDGFGMSEAGTVFGMSVDCDVI--------------------RAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPG  333 (488)
T ss_pred             --CCceeeeecccccccccccCCCcccc--------------------cccCCccccCCCCcEEEEECCCCCCCcCCCce
Confidence              89999999999998654321111100                    0023469999999999998865     46789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|++++.||+++++.+...+..++||+|||+++++++|.+++.||.||+|+.+|++++|.+||++|.+++.|.+++
T Consensus       334 el~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~  413 (488)
T PRK09088        334 ELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECA  413 (488)
T ss_pred             EEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEE
Confidence            99999999999999999988888878899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++++++..++..++++++.+.                .....+++.+++++ .++.+++|..+.++ ++||+|++||++
T Consensus       414 v~~~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~i~~~-~~iP~t~~gKi~  475 (488)
T PRK09088        414 VVGMADAQWGEVGYLAIVPADG----------------APLDLERIRSHLST-RLAKYKVPKHLRLV-DALPRTASGKLQ  475 (488)
T ss_pred             EEeCCCccCCceeEEEEEECCC----------------CCCCHHHHHHHHHh-hCcCCCCCCEEEEc-ccCCCCCCCcee
Confidence            9999887767778888887654                11346789999999 79999999998875 789999999999


Q ss_pred             hHHHHHHHHhh
Q 019921          316 RDEVRREVMSH  326 (334)
Q Consensus       316 r~~l~~~~~~~  326 (334)
                      |++|++++.+.
T Consensus       476 r~~l~~~~~~~  486 (488)
T PRK09088        476 KARLRDALAAG  486 (488)
T ss_pred             HHHHHHHHHhc
Confidence            99999988764

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.4e-42  Score=325.68  Aligned_cols=277  Identities=30%  Similarity=0.511  Sum_probs=236.7

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+..++..+++.++++++|++.++|+++..|.+.....   ....++|.+++||+++++++++.+++. 
T Consensus       202 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---~~~~~lr~~~~~g~~~~~~~~~~~~~~-  277 (483)
T PRK03640        202 RSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG---TYPSSFRCMLLGGGPAPKPLLEQCKEK-  277 (483)
T ss_pred             HHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc---ccCCcceEEEEcCCCCCHHHHHHHHHh-
Confidence            3567899999999999999999999999999999999999988654322   134689999999999999999998874 


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC----CCceeEE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRI  157 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~----~g~~Gel  157 (334)
                       ++++++.||+||++..+.........                     ...+++|.|++++++++.+++    .|+.|||
T Consensus       278 -~~~~~~~YG~tE~~~~~~~~~~~~~~---------------------~~~~~vG~p~~~~~~~i~~~~~~~~~g~~Gel  335 (483)
T PRK03640        278 -GIPVYQSYGMTETASQIVTLSPEDAL---------------------TKLGSAGKPLFPCELKIEKDGVVVPPFEEGEI  335 (483)
T ss_pred             -CCCeeeeeccCcccccccccCccccc---------------------ccCCCcccccCCcEEEEecCCCcCCCCCceEE
Confidence             89999999999987543322211110                     033469999999999998753    5678999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|++++.||+++++.+...+ .++||+|||++++++||++++.||.||+++.+|.+|++.+||+.+.++++|.+++++
T Consensus       336 ~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~  414 (483)
T PRK03640        336 VVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVV  414 (483)
T ss_pred             EEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEE
Confidence            9999999999999988877766 578999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +.++...++.++++++....                  .+.+++++++++ .++.+++|..++++ ++||+|++||++|+
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~-~l~~~~~p~~i~~~-~~iP~t~~gK~~r~  474 (483)
T PRK03640        415 GVPDDKWGQVPVAFVVKSGE------------------VTEEELRHFCEE-KLAKYKVPKRFYFV-EELPRNASGKLLRH  474 (483)
T ss_pred             eCCCcccCCceEEEEEeCCC------------------CCHHHHHHHHHH-hccCCCCCcEEEEe-CCCCCCCccceeHH
Confidence            99887777778887774433                  456789999998 79999999988875 77999999999999


Q ss_pred             HHHHHHHh
Q 019921          318 EVRREVMS  325 (334)
Q Consensus       318 ~l~~~~~~  325 (334)
                      +|++++++
T Consensus       475 ~l~~~~~~  482 (483)
T PRK03640        475 ELKQLVEE  482 (483)
T ss_pred             HHHHHHhh
Confidence            99999875

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-42  Score=339.04  Aligned_cols=304  Identities=21%  Similarity=0.245  Sum_probs=238.5

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhc----c--------------------------
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVK----K--------------------------   51 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~----~--------------------------   51 (334)
                      .+++.|+++++.+. ++..+++.|+++++|+++++|.++..+.......    .                          
T Consensus       367 ~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  445 (746)
T PTZ00342        367 LSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFL  445 (746)
T ss_pred             HHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHH
Confidence            35778999998875 8999999999999999999999998886531100    0                          


Q ss_pred             ----------ccCCCCCccEEEeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccC
Q 019921           52 ----------TWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGN  121 (334)
Q Consensus        52 ----------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (334)
                                .....++||.+++||+++++++.++|...+ +++++++||+||+++.++.....+.              
T Consensus       446 ~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~~~~--------------  510 (746)
T PTZ00342        446 EGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHADDN--------------  510 (746)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccCCCC--------------
Confidence                      000126899999999999999999999988 8999999999999865543322110              


Q ss_pred             CCCCCCCCCCceeecccc-CcceEEEeeCC------CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEc
Q 019921          122 VTPNSVHQPQGVCVGKPA-PHVELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSID  194 (334)
Q Consensus       122 ~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~  194 (334)
                               ..+++|.|+ |+++++++|.+      ..+.|||+++|++++.|||++++.|...|+.+|||+|||+|++|
T Consensus       511 ---------~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d  581 (746)
T PTZ00342        511 ---------NTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQIN  581 (746)
T ss_pred             ---------CcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEEC
Confidence                     344799998 99999998732      23569999999999999999999999999889999999999999


Q ss_pred             CCCcEEEeeccCceee-eCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccc-------
Q 019921          195 DGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCD-------  266 (334)
Q Consensus       195 ~~G~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------  266 (334)
                      +||+++|+||.+|+|| .+|++|+|.+||+++.+||.|.+++|++..   ....++|+|++............       
T Consensus       582 ~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~---~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~  658 (746)
T PTZ00342        582 KNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD---SMDGPLAIISVDKYLLFKCLKDDNMLESTG  658 (746)
T ss_pred             CCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC---CccccEEEEECCHHHHHHHHHhcCCccccc
Confidence            9999999999999999 689999999999999999999999999852   23468899988764321111100       


Q ss_pred             -cccch------------hhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc----CCCCCccchHHHHHHHH---hh
Q 019921          267 -QSSKN------------KELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP----LTSTGKIRRDEVRREVM---SH  326 (334)
Q Consensus       267 -~~~~~------------~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP----~t~~GKv~r~~l~~~~~---~~  326 (334)
                       .....            +-.....+.+.+..++..+..|..++.+.+..+++.    .|++.|+.|+.+.+.|+   ++
T Consensus       659 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~~  738 (746)
T PTZ00342        659 INEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFIDQ  738 (746)
T ss_pred             cCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHHH
Confidence             00000            001112334444444447999999999988776665    89999999999999988   88


Q ss_pred             cccCCCC
Q 019921          327 LKSLPSN  333 (334)
Q Consensus       327 ~~~l~~~  333 (334)
                      |+++|.+
T Consensus       739 i~~~y~~  745 (746)
T PTZ00342        739 VKKIYKN  745 (746)
T ss_pred             HHHHhcC
Confidence            8888864

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.8e-42  Score=327.84  Aligned_cols=276  Identities=25%  Similarity=0.369  Sum_probs=235.3

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++.+.+++..+++.++++++|++.++|+++..+........  ..++++|.+++||+++++++++++.+.|
T Consensus       257 ~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--~~~~~l~~~~~gG~~~~~~~~~~~~~~~  334 (538)
T TIGR03208       257 MPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG--APVPSLFTFLCAGAPIPGILVERAWELL  334 (538)
T ss_pred             HHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC--CCCCcceEEEEcCCCCCHHHHHHHHHHc
Confidence            35678999999888999999999999999999999999998877653322  2467899999999999999999999988


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       ++++++.||+||++.+.+........                     ....++|.|+|++++++++++     .|+.||
T Consensus       335 -~~~~~~~YG~tE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~Ge  392 (538)
T TIGR03208       335 -GALIVSAWGMTENGAVTVTEPDDALE---------------------KASTTDGRPLPGVEVKVIDANGAKLSQGETGR  392 (538)
T ss_pred             -CCeEEeeeccCcCCCccccCcccchh---------------------hccCcccccCCCCEEEEECCCCCCCcCCCCcE
Confidence             89999999999998654432211100                     012358999999999999875     577899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+..  +.++||+|||+++++++|+++++||.+|+|+.+|++|+|.+||++|.++++|.+++|
T Consensus       393 l~v~g~~~~~gy~~~~~~~~~--~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v  470 (538)
T TIGR03208       393 LLVRGCSNFGGYLKRPHLNST--DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAI  470 (538)
T ss_pred             EEEecCcccccccCCcccccc--cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEE
Confidence            999999999999999887653  468999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.++...++.+++++++..+                ...+.+.+.+++++..++.+++|..+.++ ++||+|++||++|
T Consensus       471 ~~~~~~~~g~~~~a~v~~~~~----------------~~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~iP~t~~gKv~r  533 (538)
T TIGR03208       471 VAYPDERLGERACAVVVPKPG----------------CTLDFAAMVAFLKAQKVALQYIPERLEVV-DALPATPAGKIQK  533 (538)
T ss_pred             EeccCCCCCceEEEEEEECCC----------------CCCCHHHHHHHHHhcchhhccCCcEEEEe-ccCCCCCccccch
Confidence            999988878889999987764                12445678888885468999999998775 7899999999999


Q ss_pred             HHHH
Q 019921          317 DEVR  320 (334)
Q Consensus       317 ~~l~  320 (334)
                      ++|+
T Consensus       534 ~~L~  537 (538)
T TIGR03208       534 FRLR  537 (538)
T ss_pred             Hhhc
Confidence            9986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=5.9e-42  Score=337.05  Aligned_cols=276  Identities=22%  Similarity=0.265  Sum_probs=228.4

Q ss_pred             ceeeccceEEEcCC-CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++.+. +++..+++.++++++|+++++|+++..+.+...  .  .++++||.+++||+++++++.+.+.+.
T Consensus       427 ~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--~--~~~~~lr~i~~gg~~l~~~~~~~~~~~  502 (718)
T PRK08043        427 TPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAN--P--YDFARLRYVVAGAEKLQESTKQLWQDK  502 (718)
T ss_pred             HHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcC--c--ccccceEEEEEeCccCCHHHHHHHHHH
Confidence            45778999998875 677888999999999999999999887765421  1  246899999999999999999999998


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-CCceeEEEE
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-SSHVGRILT  159 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-~g~~Gel~v  159 (334)
                      | ++++++.||+||+++.++......                       ...+++|+|+|+++++++|.+ .++.|||++
T Consensus       503 ~-g~~l~~~YG~TE~~~~~~~~~~~~-----------------------~~~~svG~p~pg~~~~i~d~~~~~~~Gel~v  558 (718)
T PRK08043        503 F-GLRILEGYGVTECAPVVSINVPMA-----------------------AKPGTVGRILPGMDARLLSVPGIEQGGRLQL  558 (718)
T ss_pred             c-CCCeecccCcccccceEEecCCcc-----------------------cCCCCCCCcCCCCeeEEecCCCCCCceEEEE
Confidence            8 899999999999986554321110                       023469999999999998865 456799999


Q ss_pred             cCcchhhhhhhc--ccC-------CCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921          160 RGAHVMLRYWDQ--FLA-------KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG  230 (334)
Q Consensus       160 ~g~~~~~gy~~~--~~~-------~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~  230 (334)
                      +|++++.||+++  ++.       +...+..+|||+|||++++|+||+++++||.||+|+++|++|+|.+||+++.+++.
T Consensus       559 ~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~  638 (718)
T PRK08043        559 KGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSP  638 (718)
T ss_pred             ecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCc
Confidence            999999999983  332       11222357999999999999999999999999999999999999999999999998


Q ss_pred             cceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCC
Q 019921          231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS  310 (334)
Q Consensus       231 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~  310 (334)
                      +.+++|++.+++..++.+++++. ..                  ..+.+++++++++..++.|++|+.+.++ ++||+|+
T Consensus       639 ~~~~avv~~~~~~~ge~~v~~~~-~~------------------~~~~~~l~~~~~~~~l~~~~vP~~i~~v-~~lP~t~  698 (718)
T PRK08043        639 DKQHATAIKSDASKGEALVLFTT-DS------------------ELTREKLQQYAREHGVPELAVPRDIRYL-KQLPLLG  698 (718)
T ss_pred             cceEEEEEccCCCCCceEEEEEc-Cc------------------ccCHHHHHHHHHhcCCCcccCCceEEEe-cccCcCC
Confidence            88888999888887887777653 11                  1445779999988449999999998875 7799999


Q ss_pred             CCccchHHHHHHHHh
Q 019921          311 TGKIRRDEVRREVMS  325 (334)
Q Consensus       311 ~GKv~r~~l~~~~~~  325 (334)
                      +||++|++|++++.+
T Consensus       699 ~GKi~r~~L~~~~~~  713 (718)
T PRK08043        699 SGKPDFVTLKSMVDE  713 (718)
T ss_pred             CCCcCHHHHHHHHhc
Confidence            999999999988765

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-42  Score=326.61  Aligned_cols=290  Identities=19%  Similarity=0.315  Sum_probs=231.8

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++ ...++..+++.++++++|.++++|+++..|++......  ..++++|.+++||++++....+++ +.+
T Consensus       234 ~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~~~~~~~~~~-~~~  309 (540)
T PRK05857        234 TCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN--ATVPSLRLVGYGGSRAIAADVRFI-EAT  309 (540)
T ss_pred             HHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC--CcCccceEEEEcCccCCchhHHHH-HHh
Confidence            35678888776 45688999999999999999999999999887643322  357899999999999998887654 466


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCC----------
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS----------  151 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~----------  151 (334)
                       ++++++.||+||++.............                  ....++++|.|++++++++++++.          
T Consensus       310 -g~~i~~~YG~TE~~~~~~~~~~~~~~~------------------~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~  370 (540)
T PRK05857        310 -GVRTAQVYGLSETGCTALCLPTDDGSI------------------VKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGP  370 (540)
T ss_pred             -CCeeecccCCCcCCceeeecccccccc------------------cccccCCcCcccCCcEEEEECccccCccccccCC
Confidence             899999999999985433221111000                  001234699999999999988641          


Q ss_pred             -CceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921          152 -SHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG  230 (334)
Q Consensus       152 -g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~  230 (334)
                       ++.|||+++|++++.||+++++.+...| .++||+|||++++|++|++++.||.||+|+++|.+|+|.+||++|..||.
T Consensus       371 ~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~  449 (540)
T PRK05857        371 SASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSG  449 (540)
T ss_pred             CCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCC
Confidence             4679999999999999999999888877 47899999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCC
Q 019921          231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS  310 (334)
Q Consensus       231 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~  310 (334)
                      |.+++|+++++...++.++++++..+...           ........+.+.+.+++ .++.+++|+.+.++ ++||+|+
T Consensus       450 V~~~~v~~~~~~~~~~~~~~~vv~~~~~~-----------~~~~~~l~~~~~~~~~~-~l~~~~~P~~v~~~-~~iP~t~  516 (540)
T PRK05857        450 VREAACYEIPDEEFGALVGLAVVASAELD-----------ESAARALKHTIAARFRR-ESEPMARPSTIVIV-TDIPRTQ  516 (540)
T ss_pred             eeEEEEEecCccccccceEEEEEeCCCCC-----------hhhHHHHHHHHHHHHHh-hhccccCCeEEEEh-hcCCCCC
Confidence            99999999998877777777777654310           00011123455666677 69999999998875 7899999


Q ss_pred             CCccchHHHHHHHHhhcc
Q 019921          311 TGKIRRDEVRREVMSHLK  328 (334)
Q Consensus       311 ~GKv~r~~l~~~~~~~~~  328 (334)
                      +||++|+.|++.+.+.-.
T Consensus       517 ~GKi~r~~l~~~~~~~~~  534 (540)
T PRK05857        517 SGKVMRASLAAAATADKA  534 (540)
T ss_pred             CcceeHHHHHHhhhhccc
Confidence            999999999998876543

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5.8e-42  Score=328.80  Aligned_cols=275  Identities=30%  Similarity=0.465  Sum_probs=235.0

Q ss_pred             eeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            4 LMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         4 l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++.|+++++.. ..++..+++.++++++|.+.++|+++..+.+......  ..++++|.+++||+++++++.+.|.+.+ 
T Consensus       281 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~~~~~~~~~~~~~~-  357 (562)
T PRK12492        281 MVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKD--LDFSALKLTNSGGTALVKATAERWEQLT-  357 (562)
T ss_pred             hhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccc--ccccceeEEEeccccCCHHHHHHHHHHh-
Confidence            45666666553 4688999999999999999999999998887643322  2467899999999999999999999988 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      ++++++.||+||++.+++........                      ..+++|.|+++++++++|++     .|+.|||
T Consensus       358 ~~~~~~~YG~tE~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~v~ivd~~~~~~~~g~~Gel  415 (562)
T PRK12492        358 GCTIVEGYGLTETSPVASTNPYGELA----------------------RLGTVGIPVPGTALKVIDDDGNELPLGERGEL  415 (562)
T ss_pred             CCceeeccCccccCceeeecCCcccc----------------------cCCccceecCCCEEEEECCCCCCCCCCCceEE
Confidence            89999999999998765433221110                      22358999999999999876     5778999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|+.++.||+++++.+...|..++||+|||+++++++|++++.||.||+|+.+|++++|.+||++|.+|+.|.+++|+
T Consensus       416 ~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~  495 (562)
T PRK12492        416 CIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAI  495 (562)
T ss_pred             EEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEE
Confidence            99999999999999999888887789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +.++...++.+++++++...                 ....+++++++++ .++.+++|..+.++ ++||+|++||++|+
T Consensus       496 ~~~~~~~~~~~~~~v~~~~~-----------------~~~~~~i~~~~~~-~l~~~~~P~~i~~~-~~~P~t~~GK~~r~  556 (562)
T PRK12492        496 GVPDERSGEAVKLFVVARDP-----------------GLSVEELKAYCKE-NFTGYKVPKHIVLR-DSLPMTPVGKILRR  556 (562)
T ss_pred             eccCCCCCceEEEEEEeCCC-----------------CCCHHHHHHHHHH-hcccccCCcEEEEe-ccCCCCCCCceeHH
Confidence            99888778888888876543                 1345789999999 79999999998875 78999999999999


Q ss_pred             HHHHH
Q 019921          318 EVRRE  322 (334)
Q Consensus       318 ~l~~~  322 (334)
                      +|++.
T Consensus       557 ~L~~~  561 (562)
T PRK12492        557 ELRDI  561 (562)
T ss_pred             HHHhh
Confidence            99865

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-42  Score=326.55  Aligned_cols=286  Identities=26%  Similarity=0.451  Sum_probs=238.3

Q ss_pred             eeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            4 LMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         4 l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      ++.|+++++.+  .+++..+++.|+++++|++.++|++++.+.+......  ..++++|.+++||+++++++.+++.+.+
T Consensus       227 ~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~  304 (528)
T PRK07470        227 VARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDR--YDHSSLRYVIYAGAPMYRADQKRALAKL  304 (528)
T ss_pred             HhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCC--CCCcceEEEEEcCCCCCHHHHHHHHHHh
Confidence            45677777665  4789999999999999999999999999877643322  2577999999999999999999999988


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       +..+++.||+||+++.++............               .....+++|.|.++++++++|++     .|+.||
T Consensus       305 -g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~---------------~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Ge  368 (528)
T PRK07470        305 -GKVLVQYFGLGEVTGNITVLPPALHDAEDG---------------PDARIGTCGFERTGMEVQIQDDEGRELPPGETGE  368 (528)
T ss_pred             -CcHHHHhCCCcccCCceeecchhhcccccc---------------ccceeeccCcccCCcEEEEECCCCCCCCCCCceE
Confidence             789999999999987554332211100000               00134468999999999998875     567899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+...+ .++||+|||+++++++|++++.||.||+|+++|++++|.+||+++.+++.|.+++|
T Consensus       369 l~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v  447 (528)
T PRK07470        369 ICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAV  447 (528)
T ss_pred             EEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEE
Confidence            99999999999999988887766 47899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.+++..++.++++++..+.                ...+.+.+++++++ .++.+++|..++++ ++||+|++||++|
T Consensus       448 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~-~l~~~~~P~~~~~~-~~iP~t~~GKi~r  509 (528)
T PRK07470        448 LGVPDPVWGEVGVAVCVARDG----------------APVDEAELLAWLDG-KVARYKLPKRFFFW-DALPKSGYGKITK  509 (528)
T ss_pred             EeccCcccCceeEEEEEECCC----------------CCCCHHHHHHHHHH-hhhcCCCCcEEEEe-ccCCCCCcccccH
Confidence            999988777778888876654                11345789999999 79999999988775 7899999999999


Q ss_pred             HHHHHHHHhh
Q 019921          317 DEVRREVMSH  326 (334)
Q Consensus       317 ~~l~~~~~~~  326 (334)
                      +.|++++.++
T Consensus       510 ~~l~~~~~~~  519 (528)
T PRK07470        510 KMVREELEER  519 (528)
T ss_pred             HHHHHHHHhc
Confidence            9999987765

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-41  Score=324.80  Aligned_cols=287  Identities=23%  Similarity=0.335  Sum_probs=236.0

Q ss_pred             eeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            3 MLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         3 ~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      ++..|+++++.+ .+++..+++.++++++|.+.++|+++..+++......  ..+++||.++++|+++++++++++.+.+
T Consensus       240 ~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~~~~  317 (539)
T PRK07008        240 APLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG--LRFSTLRRTVIGGSACPPAMIRTFEDEY  317 (539)
T ss_pred             HHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC--CCcccceEEEEcCCCCCHHHHHHHHHHh
Confidence            467899998874 5899999999999999999999999999887654432  2578999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCC-------Cce
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHV  154 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~-------g~~  154 (334)
                       ++++++.||+||++..++...........           .+.. ......++|.|+|+++++++|++.       ++.
T Consensus       318 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~  384 (539)
T PRK07008        318 -GVEVIHAWGMTEMSPLGTLCKLKWKHSQL-----------PLDE-QRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAF  384 (539)
T ss_pred             -CCceecccccccccccceecccccccccC-----------Cchh-hhhhcccCCccccceEEEEECCCCCccCCCCCcc
Confidence             89999999999999755433221100000           0000 000123589999999999998751       246


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceE
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI  234 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  234 (334)
                      |||+++|++++.||++++..   .+ .++||+|||++++++||+++++||.+|+|+.+|++|+|.+||+++..+|.|.++
T Consensus       385 Gei~v~g~~~~~gy~~~~~~---~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~  460 (539)
T PRK07008        385 GDLQVRGPWVIDRYFRGDAS---PL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEA  460 (539)
T ss_pred             eEEEEeCCccchhhcCChhh---hh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEE
Confidence            99999999999999998732   22 268999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCcc
Q 019921          235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI  314 (334)
Q Consensus       235 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv  314 (334)
                      +++++++...++.++++|+..++                .....+++++++++ .++.|.+|+.+.++ ++||+|++||+
T Consensus       461 ~v~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~lP~t~sgKi  522 (539)
T PRK07008        461 ACIACAHPKWDERPLLVVVKRPG----------------AEVTREELLAFYEG-KVAKWWIPDDVVFV-DAIPHTATGKL  522 (539)
T ss_pred             EEEecCCchhccceEEEEEeCCC----------------CccCHHHHHHHHHh-hcccccCCeEEEEe-cCCCCCCccce
Confidence            99999988777888888887654                12456789999999 79999999998775 88999999999


Q ss_pred             chHHHHHHHHhh
Q 019921          315 RRDEVRREVMSH  326 (334)
Q Consensus       315 ~r~~l~~~~~~~  326 (334)
                      +|++|++.+.+-
T Consensus       523 ~r~~l~~~~~~~  534 (539)
T PRK07008        523 QKLKLREQFRDY  534 (539)
T ss_pred             eHHHHHHHHHhh
Confidence            999999988763

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.8e-42  Score=324.06  Aligned_cols=278  Identities=24%  Similarity=0.391  Sum_probs=232.8

Q ss_pred             eeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCC
Q 019921            4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK   83 (334)
Q Consensus         4 l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~   83 (334)
                      +..|+++++.+.+++..+++.|+++++|.++++|+++..+............++++|.+++||+++++++.+.+.+.+ +
T Consensus       217 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~  295 (501)
T PRK13390        217 HALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-G  295 (501)
T ss_pred             HhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-C
Confidence            357999999888999999999999999999999999998876543221222467899999999999999999999988 7


Q ss_pred             CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEEE
Q 019921           84 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRIL  158 (334)
Q Consensus        84 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel~  158 (334)
                      .++++.||+||+++++........                      ...+++|.|+++ .++++|++     .|+.|||+
T Consensus       296 ~~~~~~YG~tE~~~~~~~~~~~~~----------------------~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel~  352 (501)
T PRK13390        296 PIVYEYYSSTEAHGMTFIDSPDWL----------------------AHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVY  352 (501)
T ss_pred             CceeeeecccccCceEEecchhhc----------------------cCCCCcCCcccc-eEEEECCCCCCCCCCCceEEE
Confidence            899999999999864332111000                      023368999999 68888865     57889999


Q ss_pred             EcCcchhhhhhhcccCCCCccCC--CceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          159 TRGAHVMLRYWDQFLAKPSVSTG--EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       159 v~g~~~~~gy~~~~~~~~~~~~~--~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      ++|++++.||+++++.+...+..  ++|++|||+++++++|++++.||.||+|+.+|++|+|.+||++|.++++|.++++
T Consensus       353 v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v  432 (501)
T PRK13390        353 FERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAV  432 (501)
T ss_pred             EecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEE
Confidence            99999999999999988776543  6899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++++++..++.+++++++.......             ....+++.+++++ .++.+++|..++++ ++||+|++||++|
T Consensus       433 ~~~~~~~~~e~~~~~v~~~~~~~~~-------------~~~~~~l~~~~~~-~l~~~~~P~~~~~~-~~iP~t~~GKi~r  497 (501)
T PRK13390        433 IGVPDPEMGEQVKAVIQLVEGIRGS-------------DELARELIDYTRS-RIAHYKAPRSVEFV-DELPRTPTGKLVK  497 (501)
T ss_pred             EeccCcccCceeEEEEEecCCCCcc-------------hhhHHHHHHHHHH-hcccCCCCcEEEEe-ccCCCCCccceeh
Confidence            9999988888999998877541100             1224678889999 79999999998876 7799999999999


Q ss_pred             HHHH
Q 019921          317 DEVR  320 (334)
Q Consensus       317 ~~l~  320 (334)
                      ++|+
T Consensus       498 ~~L~  501 (501)
T PRK13390        498 GLLR  501 (501)
T ss_pred             hhcC
Confidence            9874

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.5e-41  Score=321.79  Aligned_cols=288  Identities=23%  Similarity=0.310  Sum_probs=234.9

Q ss_pred             ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .++..|+++++.++   .++..+++.+++++++.+.++|+++..++......  ...+++++.++++|+++++++++++.
T Consensus       202 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~--~~~~~~l~~~~~~G~~~~~~~~~~~~  279 (502)
T TIGR01734       202 PCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN--QENYPHLTHFLFCGEELPVKTAKALL  279 (502)
T ss_pred             HHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc--cccCCcccEEEEcCCcCCHHHHHHHH
Confidence            46788999999875   57899999999999999999999988766543222  22477999999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +.++++++++.||+||++..++..........                  .....++|.|.+++++++++++     .|+
T Consensus       280 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~------------------~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~  341 (502)
T TIGR01734       280 ERFPKATIYNTYGPTEATVAVTSVKITQEILD------------------QYPRLPIGFAKPDMNLFIMDEEGEPLPEGE  341 (502)
T ss_pred             HHCCCcEEEeCccCCcceEEEEEEEccccccc------------------cCCccccccccCCCEEEEECCCCCCCCCCC
Confidence            99989999999999999864443322111100                  0122369999999999999875     578


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG  230 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~  230 (334)
                      .|||+++|+.++.||+++++.+...+   .+.+||+|||+|+++++ ++++.||.+|+|+.+|++|+|.+||+++.++|.
T Consensus       342 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~  420 (502)
T TIGR01734       342 KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSY  420 (502)
T ss_pred             eeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCC
Confidence            89999999999999999988877654   34579999999999976 999999999999999999999999999999999


Q ss_pred             cceEEEEEEe-cCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC
Q 019921          231 IIGIVVVGIA-NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT  309 (334)
Q Consensus       231 v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t  309 (334)
                      |.+++++++. .....+.+++++++......            .......++++.+++ .++.+.+|+.++++ ++||+|
T Consensus       421 v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~~i~~~~~~-~l~~~~~P~~~~~v-~~lP~t  486 (502)
T TIGR01734       421 IESAVVVPKYNKDHKVEYLIAAIVPETEDFE------------KEFQLTKAIKKELKK-SLPAYMIPRKFIYR-DQLPLT  486 (502)
T ss_pred             ccEEEEEEEEcCCCCceEEEEEEEecccccc------------cchhhHHHHHHHHhh-hChhhcCCcEEEEc-cccCCC
Confidence            9999999976 44456778888876653110            011223678899998 79999999999875 789999


Q ss_pred             CCCccchHHHHHHHH
Q 019921          310 STGKIRRDEVRREVM  324 (334)
Q Consensus       310 ~~GKv~r~~l~~~~~  324 (334)
                      ++||++|++|++++.
T Consensus       487 ~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       487 ANGKIDRKALAEEVN  501 (502)
T ss_pred             CCCcccHHHHHHhhc
Confidence            999999999999865

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.7e-42  Score=323.77  Aligned_cols=288  Identities=22%  Similarity=0.343  Sum_probs=245.3

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.+++..+++.++++++|+++++|+++..+++.........+++++|.+++||++++.++++++.+.+ 
T Consensus       208 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-  286 (502)
T PRK08276        208 ALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-  286 (502)
T ss_pred             HHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-
Confidence            5678999999999999999999999999999999999999887653322223578999999999999999999999998 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      +..+++.||+||++.+++.......                      ...+++|.|+ ++.++++|++     .|+.|||
T Consensus       287 ~~~~~~~yG~tE~~~~~~~~~~~~~----------------------~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~Gel  343 (502)
T PRK08276        287 GPIIHEYYASSEGGGVTVITSEDWL----------------------AHPGSVGKAV-LGEVRILDEDGNELPPGEIGTV  343 (502)
T ss_pred             CcHhhhhcccccccceeEecCcccc----------------------ccCCCcceec-ccEEEEECCCCCCCcCCCceEE
Confidence            8899999999999875443221100                      0223689999 7899998865     4678999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|+.++.||+++++.+...+..++||+|||+++++++|.+++.||.||+++.+|.++++.+||.+|.+++.|.+++++
T Consensus       344 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~  423 (502)
T PRK08276        344 YFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVF  423 (502)
T ss_pred             EEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEE
Confidence            99999999999999998888887779999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +..++..++.+++++++++....             .....+.+...+++ .++.+++|..+.++ ++||+|++||++|+
T Consensus       424 ~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~i~~~~~~-~l~~~~~p~~i~~~-~~lP~t~~GKi~r~  488 (502)
T PRK08276        424 GVPDEEMGERVKAVVQPADGADA-------------GDALAAELIAWLRG-RLAHYKCPRSIDFE-DELPRTPTGKLYKR  488 (502)
T ss_pred             eCCCcccCceEEEEEEECCCCCC-------------ChhhHHHHHHHHHh-hccCCCCCcEEEEe-cCCCCCcccchhHH
Confidence            99998888899999998765210             01223578888988 79999999998875 78999999999999


Q ss_pred             HHHHHHHhhccc
Q 019921          318 EVRREVMSHLKS  329 (334)
Q Consensus       318 ~l~~~~~~~~~~  329 (334)
                      .|++.+.+..++
T Consensus       489 ~L~~~~~~~~~~  500 (502)
T PRK08276        489 RLRDRYWEGRQR  500 (502)
T ss_pred             HHHHHHHhhhhh
Confidence            999998776654

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-41  Score=325.54  Aligned_cols=284  Identities=28%  Similarity=0.478  Sum_probs=241.3

Q ss_pred             ceeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            2 AMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         2 ~~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      .++..|+++++.+  .+++..+++.++++++|.++++|+++..+++......   ...++|.+++||+++++++++++.+
T Consensus       236 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---~~~~lr~i~~gg~~~~~~~~~~~~~  312 (542)
T PRK07786        236 PGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP---RDLALRVLSWGAAPASDTLLRQMAA  312 (542)
T ss_pred             HHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc---cCcceEEEEECCCCCCHHHHHHHHH
Confidence            3577899999865  5799999999999999999999999999987643322   2337999999999999999999999


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                      .|++.++++.||+||++.+.+........                     ....++|.|++++.++++|++     .|+.
T Consensus       313 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~  371 (542)
T PRK07786        313 TFPEAQILAAFGQTEMSPVTCMLLGEDAI---------------------RKLGSVGKVIPTVAARVVDENMNDVPVGEV  371 (542)
T ss_pred             HcCCCeEEeeecccccccceEecCccccc---------------------ccCCCccccCCCceEEEECCCCCCCcCCCc
Confidence            99899999999999998654432211100                     022369999999999999865     5778


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceE
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI  234 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  234 (334)
                      |||+++|+.++.||+++++.+...| .++||+|||+++++++|.+++.||.+|+|+++|+++++.+||++|.+++.|.++
T Consensus       372 Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~  450 (542)
T PRK07786        372 GEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEV  450 (542)
T ss_pred             eEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEE
Confidence            9999999999999999998888777 478999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCcc
Q 019921          235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI  314 (334)
Q Consensus       235 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv  314 (334)
                      +|++.+++..++.+++++++....               .....+++.+++++ .++.+.+|..+.++ ++||+|++||+
T Consensus       451 ~v~~~~~~~~~~~~~~~v~~~~~~---------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~iP~t~~GKv  513 (542)
T PRK07786        451 AVIGRADEKWGEVPVAVAAVRNDD---------------AALTLEDLAEFLTD-RLARYKHPKALEIV-DALPRNPAGKV  513 (542)
T ss_pred             EEEeccCcccCceEEEEEEECCCC---------------CCCCHHHHHHHHHh-hccCCCCCCEEEEe-ccCCCCCcccc
Confidence            999998877778888888876541               01345788999999 79999999998775 78999999999


Q ss_pred             chHHHHHHHHhhc
Q 019921          315 RRDEVRREVMSHL  327 (334)
Q Consensus       315 ~r~~l~~~~~~~~  327 (334)
                      +|++|++.+.+.-
T Consensus       514 ~r~~L~~~~~~~~  526 (542)
T PRK07786        514 LKTELRERYGACV  526 (542)
T ss_pred             cHHHHHHHHHhhh
Confidence            9999999987654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=8.5e-42  Score=352.55  Aligned_cols=289  Identities=21%  Similarity=0.281  Sum_probs=238.5

Q ss_pred             ceeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++.+ .+++..+++.++++++|++.++|++++.+.+......  .+++++|.+++||+++++++.+++++.
T Consensus       844 ~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~~~~~~~~~~~~~  921 (1146)
T PRK08633        844 LPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHP--LMFASLRLVVAGAEKLKPEVADAFEEK  921 (1146)
T ss_pred             HHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCc--ccCCCeeeEEEcCCcCCHHHHHHHHHH
Confidence            3567899988876 4789999999999999999999999998887543332  257899999999999999999999999


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCce
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHV  154 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~  154 (334)
                      + ++++++.||+||+++.++...........+.             ....+.+++|.|+|+++++++|++      .|+.
T Consensus       922 ~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~  987 (1146)
T PRK08633        922 F-GIRILEGYGATETSPVASVNLPDVLAADFKR-------------QTGSKEGSVGMPLPGVAVRIVDPETFEELPPGED  987 (1146)
T ss_pred             h-CCCeecccccccCcceEEEecCccccccccc-------------ccCCCCCCccccCCCCEEEEEcCCCCccCCCCCc
Confidence            9 8999999999999876553322111000000             001134579999999999999864      4788


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccC---CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCC--
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVST---GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP--  229 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~---~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~--  229 (334)
                      |||+++|++++.||+++++.+...+.   +++||+|||++++|+||++++.||.||+||++|++|+|.+||++|.+|+  
T Consensus       988 Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~ 1067 (1146)
T PRK08633        988 GLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGG 1067 (1146)
T ss_pred             eEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCC
Confidence            99999999999999999998877663   2489999999999999999999999999999999999999999999998  


Q ss_pred             CcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC
Q 019921          230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT  309 (334)
Q Consensus       230 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t  309 (334)
                      .+.+++|++++++..++.++++++...                   .+.+++++.+.+..++.+++|..+.++ ++||+|
T Consensus      1068 ~~~~~~v~~~~~~~~g~~~~~~v~~~~-------------------~~~~~l~~~~~~~~l~~~~~P~~i~~~-~~iP~t 1127 (1146)
T PRK08633       1068 EEVVFAVTAVPDEKKGEKLVVLHTCGA-------------------EDVEELKRAIKESGLPNLWKPSRYFKV-EALPLL 1127 (1146)
T ss_pred             CCceEEEEeccCCCCCcEEEEEEecCc-------------------cCHHHHHHHHHhcCCCcccCCcEEEEe-cCcCCC
Confidence            566899999999988888888887521                   235677777775479999999998765 789999


Q ss_pred             CCCccchHHHHHHHHhh
Q 019921          310 STGKIRRDEVRREVMSH  326 (334)
Q Consensus       310 ~~GKv~r~~l~~~~~~~  326 (334)
                      ++||++|++|++...+.
T Consensus      1128 ~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1128 GSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             CCCCCcHHHHHHHHHHh
Confidence            99999999999886654

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.7e-42  Score=327.75  Aligned_cols=282  Identities=30%  Similarity=0.491  Sum_probs=241.2

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +++.|+++++.+.+++..+++.|+++++|++.++|+++..++.......  ..++++|.+++||+++++++.+++.+.+ 
T Consensus       271 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~v~~gg~~~~~~~~~~~~~~~-  347 (563)
T PRK06710        271 SIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKE--YDISSIRACISGSAPLPVEVQEKFETVT-  347 (563)
T ss_pred             HHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcccc--CChhhhhheeeCCCcCCHHHHHHHHHhh-
Confidence            4678999999888999999999999999999999999998876432222  2457899999999999999999999988 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGR  156 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Ge  156 (334)
                      ++++++.||+||++............                      .++++|.|++++.+++++++      .|+.||
T Consensus       348 ~~~~~~~YG~tE~~~~~~~~~~~~~~----------------------~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Ge  405 (563)
T PRK06710        348 GGKLVEGYGLTESSPVTHSNFLWEKR----------------------VPGSIGVPWPDTEAMIMSLETGEALPPGEIGE  405 (563)
T ss_pred             CCCEecccccccCccccccCcccccc----------------------cCCccCCCCCCCeEEEEECCCCccCCCCCceE
Confidence            89999999999998754322211110                      22358999999999998854      567899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+...+ .++||+|||+++++++|+++++||.||+|+.+|.+|+|.+||++|.+++.|.+++|
T Consensus       406 l~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v  484 (563)
T PRK06710        406 IVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVT  484 (563)
T ss_pred             EEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEE
Confidence            99999999999999998887776 57899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      +++++...++.++++++..+.                ...+.+++++++++ .++.+++|..+.++ ++||+|++||++|
T Consensus       485 ~~~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~P~~~~~v-~~iP~t~~GKi~r  546 (563)
T PRK06710        485 IGVPDPYRGETVKAFVVLKEG----------------TECSEEELNQFARK-YLAAYKVPKVYEFR-DELPKTTVGKILR  546 (563)
T ss_pred             EccccCCcCceeEEEEEECCC----------------CCCCHHHHHHHHHH-hcccccCCcEEEEc-ccCCCCccchhhH
Confidence            999988888889898887764                12446789999998 79999999988765 7799999999999


Q ss_pred             HHHHHHHHhhcc
Q 019921          317 DEVRREVMSHLK  328 (334)
Q Consensus       317 ~~l~~~~~~~~~  328 (334)
                      +.|++++..+-+
T Consensus       547 ~~L~~~~~~~~~  558 (563)
T PRK06710        547 RVLIEEEKRKNE  558 (563)
T ss_pred             HHHHHHHhhcCc
Confidence            999998876543

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=5.6e-42  Score=359.13  Aligned_cols=304  Identities=19%  Similarity=0.183  Sum_probs=237.7

Q ss_pred             ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .+|+.|+++++.+.   .++..+++.++++++|+++++|+++..+....     ...+++||.+++||+++++++.+++.
T Consensus       476 ~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~-----~~~~~~lr~~~~gGe~l~~~~~~~~~  550 (1389)
T TIGR03443       476 TPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA-----TTPIPSLHHAFFVGDILTKRDCLRLQ  550 (1389)
T ss_pred             HHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc-----cccCCCccEEEEecccCCHHHHHHHH
Confidence            57889999999764   46889999999999999999999998876432     12477899999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-------C
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-------S  151 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-------~  151 (334)
                      +.++++++++.||+||++..++............ ...           ......++|.|+++++++|+|++       .
T Consensus       551 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~  618 (1389)
T TIGR03443       551 TLAENVCIVNMYGTTETQRAVSYFEIPSRSSDST-FLK-----------NLKDVMPAGKGMKNVQLLVVNRNDRTQTCGV  618 (1389)
T ss_pred             HhCCCCEEEECccCCccceeEEEEEccccccccc-hhh-----------cccCcCcCCCccCCCEEEEECCccCCCcCCC
Confidence            8888999999999999987655433221110000 000           00022358999999999999854       4


Q ss_pred             CceeEEEEcCcchhhhhhhcccCCCCccC----------------------------CCceEeccceEEEcCCCcEEEee
Q 019921          152 SHVGRILTRGAHVMLRYWDQFLAKPSVST----------------------------GEVWLDTGDIGSIDDGGNVWLVG  203 (334)
Q Consensus       152 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~----------------------------~~~~~~TGDl~~~~~~G~l~~~G  203 (334)
                      |+.|||+|+|+++++||+++++.+...|.                            +++||+|||+|++++||.++|+|
T Consensus       619 G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~G  698 (1389)
T TIGR03443       619 GEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCG  698 (1389)
T ss_pred             CCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEec
Confidence            78899999999999999999988876652                            35899999999999999999999


Q ss_pred             ccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccc---cc-c-c-----cchhh
Q 019921          204 RRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESN---CD-Q-S-----SKNKE  273 (334)
Q Consensus       204 R~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~-~-~-----~~~~~  273 (334)
                      |.||+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++..........   .. . .     .....
T Consensus       699 R~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  778 (1389)
T TIGR03443       699 RADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIK  778 (1389)
T ss_pred             ccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhh
Confidence            9999999999999999999999999999999999988877778899998876221100000   00 0 0     00001


Q ss_pred             hhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHHHHHHH
Q 019921          274 LLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVM  324 (334)
Q Consensus       274 ~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~  324 (334)
                      .....+++++++++ .++.|++|..++++ ++||+|++|||+|++|++.+.
T Consensus       779 ~~~~~~~l~~~l~~-~Lp~y~~P~~~~~~-~~lP~t~~GKidr~~L~~~~~  827 (1389)
T TIGR03443       779 YRKLIKDIREYLKK-KLPSYAIPTVIVPL-KKLPLNPNGKVDKPALPFPDT  827 (1389)
T ss_pred             hhhhHHHHHHHHHh-hCCcccCCceEEEc-ccCCCCCCccccHhhcCCCch
Confidence            12235788999998 79999999988765 789999999999999975433

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.3e-41  Score=322.27  Aligned_cols=279  Identities=27%  Similarity=0.453  Sum_probs=239.8

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      ++++.|+++++.+..++..+++.+  .++|.+.++|+++..+++......  ..++++|.+++||+++++++++.+.+.+
T Consensus       218 ~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~~~~~~~~~~~~~~  293 (504)
T PRK07514        218 VALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTR--EAAAHMRLFISGSAPLLAETHREFQERT  293 (504)
T ss_pred             HHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCc--ccccceeeEEecCCCCCHHHHHHHHHHh
Confidence            467889999999989999999999  479999999999998876643322  2467899999999999999999999988


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G  155 (334)
                       +.++++.||+||++..........                       ....++|.|+++++++++|++      .|+.|
T Consensus       294 -~~~~~~~YG~tE~~~~~~~~~~~~-----------------------~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~G  349 (504)
T PRK07514        294 -GHAILERYGMTETNMNTSNPYDGE-----------------------RRAGTVGFPLPGVSLRVTDPETGAELPPGEIG  349 (504)
T ss_pred             -CCcceeecccccccccccCCcccc-----------------------ccCcccccCCCCcEEEEEECCCCCCCCCCCce
Confidence             889999999999985433211100                       022368999999999999843      46789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|+.++.||+++++.+...|..++||+|||+++++++|.+++.||.||+|+.+|++++|.+||+++..+++|.+++
T Consensus       350 el~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~  429 (504)
T PRK07514        350 MIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESA  429 (504)
T ss_pred             EEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEE
Confidence            99999999999999999999888888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++++++..++.++++++..+.                .....+++++.+++ .++.+++|..++++ ++||+|++||++
T Consensus       430 v~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~~p~t~~gK~~  491 (504)
T PRK07514        430 VIGVPHPDFGEGVTAVVVPKPG----------------AALDEAAILAALKG-RLARFKQPKRVFFV-DELPRNTMGKVQ  491 (504)
T ss_pred             EEeCCCCCcCceEEEEEEECCC----------------CCCCHHHHHHHHHh-hcccCCCCcEEEEe-ccCCCCCCccee
Confidence            9999988777888888887654                11346788999999 79999999998875 789999999999


Q ss_pred             hHHHHHHHHhh
Q 019921          316 RDEVRREVMSH  326 (334)
Q Consensus       316 r~~l~~~~~~~  326 (334)
                      |++|++.+.+.
T Consensus       492 r~~l~~~~~~~  502 (504)
T PRK07514        492 KNLLREQYADL  502 (504)
T ss_pred             HHHHHHHHHhh
Confidence            99999887764

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.3e-41  Score=319.19  Aligned_cols=282  Identities=24%  Similarity=0.425  Sum_probs=239.1

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.+++..+++.++++++|++.++|+++..+++.........+++++|.+++||+++++++++++.+.+ 
T Consensus       217 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-  295 (509)
T PRK12406        217 AGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-  295 (509)
T ss_pred             HHhhheEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-
Confidence            4567899999888999999999999999999999999999886543322223568999999999999999999999988 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      ++.+++.||+||++.+++........                      .++++|.|+++++++++|++     .|+.|||
T Consensus       296 ~~~~~~~YG~tE~~~~~~~~~~~~~~----------------------~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel  353 (509)
T PRK12406        296 GPVIYEYYGSTESGAVTFATSEDALS----------------------HPGTVGKAAPGAELRFVDEDGRPLPQGEIGEI  353 (509)
T ss_pred             CCcEEeeccccccCceEecCcccccc----------------------cCCCcCccCCCcEEEEECCCCCCCCCCCceEE
Confidence            89999999999999754432111000                      23368999999999999875     5678999


Q ss_pred             EEcCcchhh-hhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          158 LTRGAHVML-RYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       158 ~v~g~~~~~-gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      +++++.++. +|+++++.+...+ .++||+|||+++++++|++++.||.||+||++|.+|+|.+||++|.++++|.++++
T Consensus       354 ~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v  432 (509)
T PRK12406        354 YSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAV  432 (509)
T ss_pred             EEECCccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence            999998765 8999888776655 68999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.++...++.+++++++.+.                .....+++++.+++ .++.+++|..+.++ ++||+|++||++|
T Consensus       433 ~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~~-~~iP~t~~GK~~r  494 (509)
T PRK12406        433 FGIPDAEFGEALMAVVEPQPG----------------ATLDEADIRAQLKA-RLAGYKVPKHIEIM-AELPREDSGKIFK  494 (509)
T ss_pred             EeeeccccCceeEEEEEECCC----------------CCCCHHHHHHHHHH-hcccCCCCcEEEEe-ccCCCCCccchhH
Confidence            999988777888888887654                11346788999999 79999999998875 7899999999999


Q ss_pred             HHHHHHHHhh
Q 019921          317 DEVRREVMSH  326 (334)
Q Consensus       317 ~~l~~~~~~~  326 (334)
                      ++|++.+...
T Consensus       495 ~~L~~~~~~~  504 (509)
T PRK12406        495 RRLRDPYWAN  504 (509)
T ss_pred             HHHHHHHHhh
Confidence            9999877653

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.6e-41  Score=322.58  Aligned_cols=277  Identities=27%  Similarity=0.425  Sum_probs=235.0

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.....   ..++++|.+++||+++++++++.+++.+
T Consensus       222 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~~~l~~~~~~g~~l~~~~~~~~~~~~  298 (515)
T TIGR03098       222 TAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE---SAAPSLRYLTNSGGAMPRATLSRLRSFL  298 (515)
T ss_pred             HHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccCC---CCccceEEEEecCCcCCHHHHHHHHHHC
Confidence            4678999999998899999999999999999999999999887642211   2467899999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                      +++.+++.||+||++..........                      ...++++|.|++++++++++++     .|+.||
T Consensus       299 ~~~~~~~~YG~tE~~~~~~~~~~~~----------------------~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Ge  356 (515)
T TIGR03098       299 PNARLFLMYGLTEAFRSTYLPPEEV----------------------DRRPDSIGKAIPNAEVLVLREDGSECAPGEEGE  356 (515)
T ss_pred             CCCeEeeeeccccccceEecccccc----------------------cCCCCCcceecCCCEEEEECCCCCCCCCCCceE
Confidence            8889999999999875332211100                      0133469999999999998865     477899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccC-----------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVST-----------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                      ++++|+.++.||++++..+...+.           +++||+|||+++++++|++++.||.+|+|+.+|++|+|.+||+++
T Consensus       357 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l  436 (515)
T TIGR03098       357 LVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVA  436 (515)
T ss_pred             EEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHH
Confidence            999999999999998876654432           245899999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCC
Q 019921          226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP  305 (334)
Q Consensus       226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~  305 (334)
                      .+++.|.+++|++++++..++.++++++....                ...+.+.+++++++ .++.+++|..++++ ++
T Consensus       437 ~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~----------------~~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~  498 (515)
T TIGR03098       437 YATGLVAEAVAFGVPDPTLGQAIVLVVTPPGG----------------EELDRAALLAECRA-RLPNYMVPALIHVR-QA  498 (515)
T ss_pred             hcCCCeeEEEEEeccCcccCceEEEEEEeCCC----------------CCCCHHHHHHHHHh-hCccccCCCEEEEe-cc
Confidence            99999999999999998888889888876543                12456789999999 79999999998875 77


Q ss_pred             ccCCCCCccchHHHHH
Q 019921          306 FPLTSTGKIRRDEVRR  321 (334)
Q Consensus       306 lP~t~~GKv~r~~l~~  321 (334)
                      ||+|++||++|++|++
T Consensus       499 iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       499 LPRNANGKIDRKALAA  514 (515)
T ss_pred             CCCCCCCCCcHHHhcc
Confidence            9999999999999874

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.7e-41  Score=323.30  Aligned_cols=285  Identities=28%  Similarity=0.433  Sum_probs=240.2

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +++.|+++++.+.+++..+++.++++++|+++++|+++..+++......  ..++++|.+++||+++++++.+.+.+.  
T Consensus       250 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~--~~~~~lr~i~~gG~~~~~~~~~~~~~~--  325 (547)
T PRK06087        250 PFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQP--ADLSALRFFLCGGTTIPKKVARECQQR--  325 (547)
T ss_pred             HHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCC--CCCCCeEEEEEcCCCCCHHHHHHHHHc--
Confidence            4667999999999999999999999999999998888877776543322  256799999999999999999988774  


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      ++++++.||+||++.............                     ...++|.|++++.++++|++     .|+.|||
T Consensus       326 ~~~l~~~YG~TE~~~~~~~~~~~~~~~---------------------~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel  384 (547)
T PRK06087        326 GIKLLSVYGSTESSPHAVVNLDDPLSR---------------------FMHTDGYAAAGVEIKVVDEARKTLPPGCEGEE  384 (547)
T ss_pred             CCcEEEEecccccCCccccCCCcchhh---------------------cCCcCCccCCCceEEEEcCCCCCCcCCCcceE
Confidence            899999999999987544322111000                     12358999999999999865     5778999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|+.++.||+++++.+...+..++||+|||+++++++|+++++||.+|+|+.+|++++|.+||++|.++++|.+++++
T Consensus       385 ~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~  464 (547)
T PRK06087        385 ASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVV  464 (547)
T ss_pred             EEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEE
Confidence            99999999999999988877777789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +.+++..++.+++++++.+..               .....+++.+++....++.+++|..+.++ ++||+|++||++|+
T Consensus       465 ~~~~~~~g~~~~~~v~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~P~~i~~v-~~iP~t~sGK~~r~  528 (547)
T PRK06087        465 AMPDERLGERSCAYVVLKAPH---------------HSLTLEEVVAFFSRKRVAKYKYPEHIVVI-DKLPRTASGKIQKF  528 (547)
T ss_pred             ecCCCCcCceEEEEEEECCCC---------------CCCCHHHHHHHHHhccccccCCCeEEEEe-ccCCCCCCCcCcHH
Confidence            999888788899998876530               12345677777654379999999999876 77999999999999


Q ss_pred             HHHHHHHhhcc
Q 019921          318 EVRREVMSHLK  328 (334)
Q Consensus       318 ~l~~~~~~~~~  328 (334)
                      +|++++.+++.
T Consensus       529 ~l~~~~~~~~~  539 (547)
T PRK06087        529 LLRKDIMRRLT  539 (547)
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=4.3e-41  Score=321.32  Aligned_cols=274  Identities=26%  Similarity=0.380  Sum_probs=233.9

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++.+.+++..+++.|+++++|++.++|+++..+.+......  ...+++|.++.||  +++++.+.+.+.+
T Consensus       241 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~l~~~~~g~--~~~~~~~~~~~~~  316 (542)
T PRK06155        241 QALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES--DRAHRVRVALGPG--VPAALHAAFRERF  316 (542)
T ss_pred             HHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc--cccCceEEEEEcC--CCHHHHHHHHHHc
Confidence            46788999999888999999999999999999999999988876643322  2456788877655  6789999999998


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       ++++++.||+||++..+...... .                       .++++|.|.++++++|+|++     .|+.||
T Consensus       317 -~~~v~~~YG~tE~~~~~~~~~~~-~-----------------------~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Ge  371 (542)
T PRK06155        317 -GVDLLDGYGSTETNFVIAVTHGS-Q-----------------------RPGSMGRLAPGFEARVVDEHDQELPDGEPGE  371 (542)
T ss_pred             -CCCEEeeecccccCccccCCCCC-C-----------------------CCCCcCccCCCceEEEECCCCCCCCCCCceE
Confidence             89999999999998765432111 0                       23368999999999999865     467799


Q ss_pred             EEEcCc---chhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcce
Q 019921          157 ILTRGA---HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG  233 (334)
Q Consensus       157 l~v~g~---~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  233 (334)
                      |+++|+   .++.||+++++.+...| .++||+|||++++++||++++.||.+|+|+++|.+++|.+||++|.++++|.+
T Consensus       372 i~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~  450 (542)
T PRK06155        372 LLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAA  450 (542)
T ss_pred             EEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeE
Confidence            999998   69999999988887776 57999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCc
Q 019921          234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGK  313 (334)
Q Consensus       234 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK  313 (334)
                      ++|+++++...++.+.+++++...                ...+..++++++++ .++.+++|..+.++ ++||+|++||
T Consensus       451 ~~v~~v~~~~~~~~~~~~v~~~~~----------------~~~~~~~~~~~~~~-~l~~~~~P~~i~~~-~~iP~t~~GK  512 (542)
T PRK06155        451 AAVFPVPSELGEDEVMAAVVLRDG----------------TALEPVALVRHCEP-RLAYFAVPRYVEFV-AALPKTENGK  512 (542)
T ss_pred             EEEEeecccccCceEEEEEEECCC----------------CCCCHHHHHHHHHh-hCcCccCCcEEEEe-ccCCCCcccc
Confidence            999999988777788888877654                12456789999999 79999999998875 7899999999


Q ss_pred             cchHHHHHHH
Q 019921          314 IRRDEVRREV  323 (334)
Q Consensus       314 v~r~~l~~~~  323 (334)
                      ++|++|++++
T Consensus       513 i~r~~l~~~~  522 (542)
T PRK06155        513 VQKFVLREQG  522 (542)
T ss_pred             eeHHHHHhhc
Confidence            9999999875

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.9e-41  Score=321.52  Aligned_cols=291  Identities=23%  Similarity=0.365  Sum_probs=238.8

Q ss_pred             ceeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++.+ .+++..+++.++++++|.++++|+++..++........  ...+||.+++||+++++++.+++.+.
T Consensus       244 ~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~l~~~~~gG~~~~~~~~~~~~~~  321 (576)
T PRK05620        244 AAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP--ERMSLQEIYVGGSAVPPILIKAWEER  321 (576)
T ss_pred             HHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc--ccCceeEEEEcCCCCCHHHHHHHHHH
Confidence            3567899988875 47899999999999999999999999988765432221  34579999999999999999999998


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCce
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHV  154 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~  154 (334)
                      + ++++++.||+||++..++.............               .....++|++.+++++++++++      .++.
T Consensus       322 ~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~---------------~~~~~~~G~~~~~~~~~i~~~g~~~~~~~~~~  385 (576)
T PRK05620        322 Y-GVDVVHVWGMTETSPVGTVARPPSGVSGEAR---------------WAYRVSQGRFPASLEYRIVNDGQVMESTDRNE  385 (576)
T ss_pred             h-CCceeeeccccccccceeeeccCCccccccc---------------cccccccCCcCCceeEEEecCCccccCCCCCc
Confidence            8 8999999999999876544332211000000               0012258999999999998763      2467


Q ss_pred             eEEEEcCcchhhhhhhcccCC----------------CCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeCh
Q 019921          155 GRILTRGAHVMLRYWDQFLAK----------------PSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYP  218 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~----------------~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~  218 (334)
                      |||+++|++++.||+++++.+                ...+..++||+|||++++++||++++.||.+|+|+.+|++|+|
T Consensus       386 Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~  465 (576)
T PRK05620        386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYS  465 (576)
T ss_pred             eEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcH
Confidence            999999999999999998877                2234467899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceE
Q 019921          219 EEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRL  298 (334)
Q Consensus       219 ~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~  298 (334)
                      .+||++|.+||.|.+++|++.++...++.+++++++.++...             .....++|++++++ .++.+++|+.
T Consensus       466 ~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~-------------~~~~~~~l~~~l~~-~L~~~~~P~~  531 (576)
T PRK05620        466 AQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEP-------------TRETAERLRDQLRD-RLPNWMLPEY  531 (576)
T ss_pred             HHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCc-------------ccccHHHHHHHHHh-hCccccCCeE
Confidence            999999999999999999999998878888988887765110             01346889999999 7999999999


Q ss_pred             EEeccCCccCCCCCccchHHHHHHHHh
Q 019921          299 FVLWRKPFPLTSTGKIRRDEVRREVMS  325 (334)
Q Consensus       299 ~~~~~~~lP~t~~GKv~r~~l~~~~~~  325 (334)
                      +.++ ++||+|++||++|++|++++.+
T Consensus       532 i~~v-~~~P~t~~GKv~r~~L~~~~~~  557 (576)
T PRK05620        532 WTFV-DEIDKTSVGKFDKKDLRQHLAD  557 (576)
T ss_pred             EEEe-ccCCCCCcccCcHHHHHHHHhc
Confidence            8875 7899999999999999999885

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=6.7e-41  Score=322.24  Aligned_cols=302  Identities=25%  Similarity=0.367  Sum_probs=230.9

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +++.|+++++++.+++..+++.|+++++|++.++|+++..|.+......  ...++++.+++||+++++.+.+++.+ + 
T Consensus       248 ~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~~~~~~~gg~~~~~~~~~~~~~-~-  323 (579)
T PLN03102        248 TAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL--SPRSGPVHVLTGGSPPPAALVKKVQR-L-  323 (579)
T ss_pred             HHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc--CCcccceEEEECCCCCCHHHHHHHHH-c-
Confidence            4678999999888899999999999999999999999999887543221  23456888999999999999999876 5 


Q ss_pred             CCceEcccccccccccccccccCCC-CCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeC------CCCcee
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDP-TLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVG  155 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~------~~g~~G  155 (334)
                      ++++++.||+||+++.++....... .......          ........+..+.+.++++++..+.      +.++.|
T Consensus       324 g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~G  393 (579)
T PLN03102        324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQ----------QMELKARQGVSILGLADVDVKNKETQESVPRDGKTMG  393 (579)
T ss_pred             CCeEEeecCccccCccccccccccccccCCccc----------ccccccCCCcccccccceEEeccccccccCCCCCCce
Confidence            8999999999999865443221110 0000000          0000001223344444444332111      123579


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|++++.||+++++.+...| .++||+|||+|++|+||++++.||.+|+|+.+|++|+|.+||++|.+||.|.+++
T Consensus       394 El~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~  472 (579)
T PLN03102        394 EIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETA  472 (579)
T ss_pred             EEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeE
Confidence            999999999999999999888887 4789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++++++..++.++++|++.+.....++.      .+.......++++++++ .++.|++|..++++ ++||+|++||++
T Consensus       473 vv~~~~~~~~~~~~a~v~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~L~~~~~P~~i~~~-~~~P~t~~gKi~  544 (579)
T PLN03102        473 VVAMPHPTWGETPCAFVVLEKGETTKEDR------VDKLVTRERDLIEYCRE-NLPHFMCPRKVVFL-QELPKNGNGKIL  544 (579)
T ss_pred             EEeccCccccceeEEEEEecCcccccccc------cccccccHHHHHHHHHh-hcccccCCeEEEEc-ccCCCCCccccc
Confidence            99999988888999999887642211110      00111235789999999 79999999998875 889999999999


Q ss_pred             hHHHHHHHHhhc
Q 019921          316 RDEVRREVMSHL  327 (334)
Q Consensus       316 r~~l~~~~~~~~  327 (334)
                      |++|++++.+..
T Consensus       545 r~~L~~~~~~~~  556 (579)
T PLN03102        545 KPKLRDIAKGLV  556 (579)
T ss_pred             HHHHHHHHHHhh
Confidence            999999876643

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4e-41  Score=320.00  Aligned_cols=284  Identities=32%  Similarity=0.551  Sum_probs=244.5

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+..++..+++.++++++|.++++|++++.+.+......  ..++++|.+++||++++.++++++.+.| 
T Consensus       229 ~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-  305 (521)
T PRK06187        229 ALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYF--VDFSSLRLVIYGGAALPPALLREFKEKF-  305 (521)
T ss_pred             HHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCc--cCcchhhEEEEcCcCCCHHHHHHHHHHh-
Confidence            5678999999988899999999999999999999999999987765422  3578999999999999999999999999 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCC-------Ccee
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHVG  155 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~-------g~~G  155 (334)
                      ++++++.||+||+++++...........                 ......++|.|++++.++++|++.       |+.|
T Consensus       306 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~-----------------~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~G  368 (521)
T PRK06187        306 GIDLVQGYGMTETSPVVSVLPPEDQLPG-----------------QWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVG  368 (521)
T ss_pred             CcchheeeccCccCcccccCCccccccc-----------------ccccCCccccccCCeEEEEECCCCCCCCCCCCCee
Confidence            9999999999999876554432211000                 001334699999999999998762       8889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|+.++.+|+++++.+...+ .++||+|||+++++++|++++.||.+|+++.+|.+++|.+||++|.++++|.+++
T Consensus       369 el~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~  447 (521)
T PRK06187        369 EIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVA  447 (521)
T ss_pred             EEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEE
Confidence            999999999999999988777766 4569999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++.+++..++.+++++++.++                .....+.+.+++++ .++.+.+|..++++ ++||+|++||++
T Consensus       448 v~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~~P~t~~gK~~  509 (521)
T PRK06187        448 VIGVPDEKWGERPVAVVVLKPG----------------ATLDAKELRAFLRG-RLAKFKLPKRIAFV-DELPRTSVGKIL  509 (521)
T ss_pred             EEeccCCCcCceEEEEEEECCC----------------CCCCHHHHHHHHHH-hccCCCCceEEEEc-cCCCCCCCCCee
Confidence            9999988878889999987765                12456788999988 79999999998875 779999999999


Q ss_pred             hHHHHHHHHh
Q 019921          316 RDEVRREVMS  325 (334)
Q Consensus       316 r~~l~~~~~~  325 (334)
                      |+.++++|.+
T Consensus       510 r~~l~~~~~~  519 (521)
T PRK06187        510 KRVLREQYAE  519 (521)
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.5e-41  Score=332.19  Aligned_cols=287  Identities=24%  Similarity=0.300  Sum_probs=221.3

Q ss_pred             HHHHHHHHhhcceEEEechHHHHHHHHHHhhccc--------------------------------------------cC
Q 019921           19 KSALEAVEQHCVTSLITVPAIMADLATLIRVKKT--------------------------------------------WK   54 (334)
Q Consensus        19 ~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~--------------------------------------------~~   54 (334)
                      ..++..++++++|+++++|+++..+.+.......                                            ..
T Consensus       337 ~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (696)
T PLN02387        337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRA  416 (696)
T ss_pred             cCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHH
Confidence            3467789999999999999999988754321100                                            00


Q ss_pred             -CCCCccEEEeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCce
Q 019921           55 -GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGV  133 (334)
Q Consensus        55 -~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (334)
                       ..+++|.+++||+++++++.+.++..+ ++++++.||+||+++.++.....+.                       ..+
T Consensus       417 ~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TEt~~~~~~~~~~~~-----------------------~~g  472 (696)
T PLN02387        417 VLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTETCAGATFSEWDDT-----------------------SVG  472 (696)
T ss_pred             HhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhhcccceeecCcccC-----------------------CCC
Confidence             015899999999999999998888888 8999999999999866554322111                       234


Q ss_pred             eeccccCcceEEEeeCC---------CCceeEEEEcCcchhhhhhhcccCCCCcc--CCCc--eEeccceEEEcCCCcEE
Q 019921          134 CVGKPAPHVELKVCSDG---------SSHVGRILTRGAHVMLRYWDQFLAKPSVS--TGEV--WLDTGDIGSIDDGGNVW  200 (334)
Q Consensus       134 ~~g~p~~~~~~~i~~~~---------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~--~~~~--~~~TGDl~~~~~~G~l~  200 (334)
                      ++|.|+|+++++++|.+         +++.|||+|+|++++.||+++++.|...|  +.+|  ||+|||+|++|+||+++
T Consensus       473 svG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~  552 (696)
T PLN02387        473 RVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLE  552 (696)
T ss_pred             ccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEE
Confidence            69999999999999832         23469999999999999999999998887  3344  99999999999999999


Q ss_pred             EeeccCceeee-CceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccc--ccc-------ccc
Q 019921          201 LVGRRNGRIKS-GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESN--CDQ-------SSK  270 (334)
Q Consensus       201 ~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~-------~~~  270 (334)
                      |+||.||+||. +|++|+|.+||++|.+||.|.+++|++.+.   ...++++|++.+........  ...       ...
T Consensus       553 i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (696)
T PLN02387        553 IIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF---HSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEK  629 (696)
T ss_pred             EEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcC
Confidence            99999999995 799999999999999999999999998653   34578888876542111000  000       001


Q ss_pred             hhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc-----CCCCCccchHHHHHHHHhhcccCCC
Q 019921          271 NKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPS  332 (334)
Q Consensus       271 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~l~~  332 (334)
                      .+......+.+.+..++..|..|.+|+.+.+..+++.     .|+++|+.|+.+++.|.++|++||.
T Consensus       630 ~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~  696 (696)
T PLN02387        630 EEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE  696 (696)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence            1112223344555545557999999999988766664     8999999999999999999999994

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.2e-41  Score=321.99  Aligned_cols=276  Identities=26%  Similarity=0.429  Sum_probs=235.3

Q ss_pred             eeeccceEEEcCC-CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            3 MLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         3 ~l~~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      ++..|++.++.+. .++..+++.++++++|.+.++|+++..+........  ..++++|.++.||+++++.+.++|.+.+
T Consensus       274 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~--~~~~~l~~~~~gg~~~~~~~~~~~~~~~  351 (557)
T PRK07059        274 GMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDK--LDFSKLIVANGGGMAVQRPVAERWLEMT  351 (557)
T ss_pred             HHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCc--CCchhheEEEeccccCCHHHHHHHHHHh
Confidence            3456777776654 588999999999999999999999998876543222  2467899999999999999999999988


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       ++++++.||+||++.+++........                      ...++|.|++++++++++++     .|+.||
T Consensus       352 -~~~~~~~YG~tE~~~~~~~~~~~~~~----------------------~~~~vG~p~~g~~v~i~d~~~~~~~~g~~Ge  408 (557)
T PRK07059        352 -GCPITEGYGLSETSPVATCNPVDATE----------------------FSGTIGLPLPSTEVSIRDDDGNDLPLGEPGE  408 (557)
T ss_pred             -CCCeeeccccccccchhhcCCCCCCC----------------------cCCcccCccCCcEEEEECCCCCCCCCCCceE
Confidence             89999999999998765433221110                      22369999999999999875     477899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+...+..+|||+|||+++++++|++++.||.+|+|+++|++++|.+||+++.++++|.+++|
T Consensus       409 l~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v  488 (557)
T PRK07059        409 ICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAA  488 (557)
T ss_pred             EEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEE
Confidence            99999999999999999888878788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.++...++.+++++.....                 ....+++.+++++ .++.+++|..+.++ ++||+|++||++|
T Consensus       489 ~~~~~~~~ge~~~~~v~~~~~-----------------~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~~P~t~~GK~~r  549 (557)
T PRK07059        489 VGVPDEHSGEAVKLFVVKKDP-----------------ALTEEDVKAFCKE-RLTNYKRPKFVEFR-TELPKTNVGKILR  549 (557)
T ss_pred             EecccCCCCeeEEEEEEeCCC-----------------CCCHHHHHHHHHH-hcccccCCcEEEEe-ccCCCCcccceeH
Confidence            999988888888888875542                 1345678889998 79999999998875 7899999999999


Q ss_pred             HHHHHH
Q 019921          317 DEVRRE  322 (334)
Q Consensus       317 ~~l~~~  322 (334)
                      +.|+++
T Consensus       550 ~~L~~~  555 (557)
T PRK07059        550 RELRDG  555 (557)
T ss_pred             HHHHhh
Confidence            999865

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.4e-41  Score=320.91  Aligned_cols=291  Identities=21%  Similarity=0.274  Sum_probs=214.0

Q ss_pred             ceeeccceEEEcCC--C--CHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK--F--ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~--~--~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      .+++.|+++++.+.  +  ++..+++.++++++|.+..+|.++..+.+..... ....+++||.+++||++++++++++|
T Consensus       214 ~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~-~~~~l~~lr~~~~gG~~l~~~~~~~~  292 (525)
T PRK05851        214 TAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRV-SDVDLGALRVALNGGEPVDCDGFERF  292 (525)
T ss_pred             HHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccc-cCCCHHHhheeEeccccCCHHHHHHH
Confidence            46788999999763  4  6788999999999998866555554444332211 11246789999999999999999999


Q ss_pred             Hhh---C--CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC--
Q 019921           78 TNS---F--PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--  150 (334)
Q Consensus        78 ~~~---~--~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~--  150 (334)
                      .+.   +  +...+++.||+||++..++.............        ..++........++|+|+|+++++|+|++  
T Consensus       293 ~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~  364 (525)
T PRK05851        293 ATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEV--------TTDDGSGARRHAVLGNPIPGMEVRISPGDGA  364 (525)
T ss_pred             HHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeee--------ccccCcccceeeeecCCCCCcEEEEECCCCC
Confidence            874   3  12459999999999865443221100000000        00000011134579999999999999865  


Q ss_pred             ----CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          151 ----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       151 ----~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                          .|+.|||+++|++++.||+++++.+     .++||+|||+++++ +|+++|+||.||+||++|++|+|.+||++|.
T Consensus       365 ~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~  438 (525)
T PRK05851        365 AGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAA  438 (525)
T ss_pred             ccCCCCCeEEEEEecCchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHH
Confidence                3678999999999999999987532     46899999999987 7999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCc--ccceEEEecc-
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF--KAPRLFVLWR-  303 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~--~~p~~~~~~~-  303 (334)
                      +||+|.+++|++++++..++.+.++|.....                 ....+.+.+.+++ .++.+  ++|+.++++. 
T Consensus       439 ~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~-----------------~~~~~~~~~~~~~-~l~~~l~~~P~~~~~v~~  500 (525)
T PRK05851        439 QVRGVREGAVVAVGTGEGSARPGLVIAAEFR-----------------GPDEAGARSEVVQ-RVASECGVVPSDVVFVAP  500 (525)
T ss_pred             hCCCcccceEEEEEecCCCCceeEEEEEEec-----------------CcchHHHHHHHHH-HHHHHhCCCccEEEEECC
Confidence            9999999999999988777777766654321                 0112233344444 34444  8898887763 


Q ss_pred             CCccCCCCCccchHHHHHHHHh
Q 019921          304 KPFPLTSTGKIRRDEVRREVMS  325 (334)
Q Consensus       304 ~~lP~t~~GKv~r~~l~~~~~~  325 (334)
                      ++||+|++||++|++|++.+.+
T Consensus       501 ~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        501 GSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             CCcCcCcchHHHHHHHHHHHHh
Confidence            1799999999999999988754

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=6.4e-41  Score=318.59  Aligned_cols=274  Identities=27%  Similarity=0.426  Sum_probs=234.1

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+++++..+++.++++++|++.++|++++.++........  ...+++.+.++ ++++++.+..+.+.+ 
T Consensus       236 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~l~~~~~~-~~~~~~~~~~~~~~~-  311 (517)
T PRK08008        236 AFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAND--RQHCLREVMFY-LNLSDQEKDAFEERF-  311 (517)
T ss_pred             HHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcccc--ccccceeeEEe-cCCCHHHHHHHHHHh-
Confidence            56689999999999999999999999999999999999888765332221  24568877775 489999999999988 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      ++++++.||+||++..+.........                      ...++|.|+++++++++|++     .|+.|||
T Consensus       312 ~~~~~~~YG~tE~~~~~~~~~~~~~~----------------------~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel  369 (517)
T PRK08008        312 GVRLLTSYGMTETIVGIIGDRPGDKR----------------------RWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEI  369 (517)
T ss_pred             CCeEEeeccccccccccccCCccccc----------------------cCCccccCCCCcEEEEECCCCCCCCCCCcceE
Confidence            89999999999998655433221110                      22369999999999999876     5778999


Q ss_pred             EEcC---cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceE
Q 019921          158 LTRG---AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI  234 (334)
Q Consensus       158 ~v~g---~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  234 (334)
                      +++|   ++++.||+++++.+...+..++||+|||+++++++|+++++||.||+|+.+|++++|.+||+++.+++.|.++
T Consensus       370 ~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~  449 (517)
T PRK08008        370 CIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDI  449 (517)
T ss_pred             EEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeE
Confidence            9998   6899999999999998888889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCcc
Q 019921          235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI  314 (334)
Q Consensus       235 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv  314 (334)
                      +|+++++...++.+.++|++++.                .....+++++++++ .++.+++|..+.++ ++||+|++||+
T Consensus       450 ~v~g~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~P~~~~~v-~~iP~t~~gK~  511 (517)
T PRK08008        450 VVVGIKDSIRDEAIKAFVVLNEG----------------ETLSEEEFFAFCEQ-NMAKFKVPSYLEIR-KDLPRNCSGKI  511 (517)
T ss_pred             EEEccCCCCCCceEEEEEEECCC----------------CCCCHHHHHHHHHh-hcccccCCcEEEEe-ccCCCCCccce
Confidence            99999988878889999988764                12456789999999 79999999998775 78999999999


Q ss_pred             chHHHH
Q 019921          315 RRDEVR  320 (334)
Q Consensus       315 ~r~~l~  320 (334)
                      +|+.|+
T Consensus       512 ~r~~l~  517 (517)
T PRK08008        512 IKKNLK  517 (517)
T ss_pred             ehhhcC
Confidence            999864

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-40  Score=316.54  Aligned_cols=283  Identities=22%  Similarity=0.336  Sum_probs=237.3

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.........+++++|.+++||+++++++++++++.| 
T Consensus       221 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-  299 (511)
T PRK13391        221 VIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-  299 (511)
T ss_pred             HHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc-
Confidence            5678999999988999999999999999999999999988876543322223477999999999999999999999988 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      +..+++.||+||++.+.........                      ..++++|.|.++ .++++|++     .|+.|||
T Consensus       300 g~~v~~~YG~tE~~~~~~~~~~~~~----------------------~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~Gel  356 (511)
T PRK13391        300 GPIIHEYYAATEGLGFTACDSEEWL----------------------AHPGTVGRAMFG-DLHILDDDGAELPPGEPGTI  356 (511)
T ss_pred             CCceeeeeccccccceEEecCcccc----------------------ccCCCcCCcccc-eEEEECCCCCCCCCCCceEE
Confidence            7899999999999875432111100                      023368999998 58888765     4677999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCC-ceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGE-VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~-~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      +++|+ ++.+|+++++.+...+..+ +||+|||+++++++|++++.||.||+++++|.++++.+||+++.+|+.|.+++|
T Consensus       357 ~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v  435 (511)
T PRK13391        357 WFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAV  435 (511)
T ss_pred             EEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEE
Confidence            99999 8889999988887766544 999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++++++..++.+++++++.....  .           .....+++++++++ .++.+++|..+.++ +++|+|++||++|
T Consensus       436 ~~~~~~~~g~~~~~~~~~~~~~~--~-----------~~~~~~~l~~~~~~-~l~~~~~P~~i~~~-~~~P~t~~gKv~r  500 (511)
T PRK13391        436 FGVPNEDLGEEVKAVVQPVDGVD--P-----------GPALAAELIAFCRQ-RLSRQKCPRSIDFE-DELPRLPTGKLYK  500 (511)
T ss_pred             EecCCcccCceeEEEEEECCCCC--c-----------ccchHHHHHHHHHh-hcccCcCCcEEEEe-ecCCCCCccceeH
Confidence            99998888888888888765310  0           01235788899999 79999999998875 7799999999999


Q ss_pred             HHHHHHHHh
Q 019921          317 DEVRREVMS  325 (334)
Q Consensus       317 ~~l~~~~~~  325 (334)
                      +.|++.+.+
T Consensus       501 ~~l~~~~~~  509 (511)
T PRK13391        501 RLLRDRYWG  509 (511)
T ss_pred             HHHHHHhhc
Confidence            999998865

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=9.1e-41  Score=327.02  Aligned_cols=288  Identities=18%  Similarity=0.171  Sum_probs=225.2

Q ss_pred             ceeeccceEEEcCC-CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      ++|++|++++++++ +++..+++.++++++|++.++|++++.|.+....  ...++++||.+++||++++++.+.++.+.
T Consensus       417 ~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~--~~~dlssLr~i~s~Ge~l~~~~~~~~~~~  494 (728)
T PLN03052        417 ASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM--AGLDWSSIRCFGSTGEASSVDDYLWLMSR  494 (728)
T ss_pred             HHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCc--ccCChhheeEEEecCCCCCHHHHHHHHHh
Confidence            57889999999875 5677899999999999999999999988765322  22357899999999999999999999887


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CC--c
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SS--H  153 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g--~  153 (334)
                      ++..++++.||+||+++.+........                      ..++++|.|.+|++++++|++     .|  +
T Consensus       495 ~~~~~i~~~yG~TE~~~~~~~~~~~~~----------------------~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~  552 (728)
T PLN03052        495 AGYKPIIEYCGGTELGGGFVTGSLLQP----------------------QAFAAFSTPAMGCKLFILDDSGNPYPDDAPC  552 (728)
T ss_pred             cCCCCeEeeccChhhCcccccCCCCCC----------------------CCCCccccCCCCceEEEECCCCCCCCCCCCc
Confidence            744689999999999865433221111                      033468999999999999875     33  3


Q ss_pred             eeEEEEcCcc--hhhhhhhcccCCCCcc------CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          154 VGRILTRGAH--VMLRYWDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       154 ~Gel~v~g~~--~~~gy~~~~~~~~~~~------~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                      .|||+++++.  ...+|+++.. ....|      .++.||+|||++++++||+++++||+||+||++|++|+|.+||++|
T Consensus       553 ~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l  631 (728)
T PLN03052        553 TGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVC  631 (728)
T ss_pred             eEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHH
Confidence            6999997642  2345555432 12222      2345999999999999999999999999999999999999999999


Q ss_pred             h-cCCCcceEEEEEEecCcce-eEEEEEEEec--cCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEe
Q 019921          226 L-QHPGIIGIVVVGIANARLT-EMVVACVRLR--ESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVL  301 (334)
Q Consensus       226 ~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~  301 (334)
                      . .||.|.+++|++++++..+ +.++++|+++  ++...            ......+.+++.+++ .++++.+|..+++
T Consensus       632 ~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~------------~~~~L~~~i~~~i~~-~l~~~~~p~~i~~  698 (728)
T PLN03052        632 NAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNP------------DLNELKKIFNSAIQK-KLNPLFKVSAVVI  698 (728)
T ss_pred             HhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCC------------CHHHHHHHHHHHHHh-hcCCccCCCEEEE
Confidence            5 7999999999999988655 8899999987  32100            011234556666777 6888999988776


Q ss_pred             ccCCccCCCCCccchHHHHHHHHhhcc
Q 019921          302 WRKPFPLTSTGKIRRDEVRREVMSHLK  328 (334)
Q Consensus       302 ~~~~lP~t~~GKv~r~~l~~~~~~~~~  328 (334)
                      + +.||+|++||++|+.|++.+.+...
T Consensus       699 v-~~lP~T~sGKi~Rr~Lr~~~~~~~~  724 (728)
T PLN03052        699 V-PSFPRTASNKVMRRVLRQQLAQELS  724 (728)
T ss_pred             c-CCCCCCCchHHHHHHHHHHHHhhhh
Confidence            5 7899999999999999999877654

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-40  Score=316.53  Aligned_cols=273  Identities=25%  Similarity=0.400  Sum_probs=230.8

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.+++..+++.++++++|.+.++|+++..+............++++|.+++||++++++++++|.+.| 
T Consensus       238 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-  316 (516)
T PRK13383        238 TIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-  316 (516)
T ss_pred             HHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-
Confidence            5678999999888999999999999999999999999998876543222122467899999999999999999999999 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      ++.+++.||+||++..+.........                      ...++|.|+|+++++++|++     .|+.|||
T Consensus       317 g~~v~~~YG~tE~~~~~~~~~~~~~~----------------------~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel  374 (516)
T PRK13383        317 GDILYNGYGSTEVGIGALATPADLRD----------------------APETVGKPVAGCPVRILDRNNRPVGPRVTGRI  374 (516)
T ss_pred             Cchhhhcccccccccceecccccccc----------------------CCCcccCCCCCcEEEEECCCCCCCCCCCceEE
Confidence            88999999999998654332211000                      23369999999999999865     4678999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|+.++.+|++.+...    ..+|||+|||+++++++|++++.||.+|+|+++|.+|+|.+||++|.+++.|.+++++
T Consensus       375 ~v~g~~~~~~Y~~~~~~~----~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv  450 (516)
T PRK13383        375 FVGGELAGTRYTDGGGKA----VVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVI  450 (516)
T ss_pred             EEecCcccccccCCchhh----eecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEE
Confidence            999999999999775321    2468999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      ++++...++.+.++|++++..                .....++++++++ .++.+++|..+.++ ++||+|++||++|+
T Consensus       451 ~~~~~~~g~~~~~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~iP~t~~gKi~r~  512 (516)
T PRK13383        451 GVPDERFGHRLAAFVVLHPGS----------------GVDAAQLRDYLKD-RVSRFEQPRDINIV-SSIPRNPTGKVLRK  512 (516)
T ss_pred             eccccccCceEEEEEEECCCC----------------CCCHHHHHHHHHH-hcccCCCCcEEEEe-CCCCCCCCCcCcHH
Confidence            999888888899999877641                1345678999999 78999999998876 78999999999999


Q ss_pred             HHH
Q 019921          318 EVR  320 (334)
Q Consensus       318 ~l~  320 (334)
                      .|.
T Consensus       513 ~L~  515 (516)
T PRK13383        513 ELP  515 (516)
T ss_pred             HhC
Confidence            873

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=2.1e-40  Score=313.87  Aligned_cols=288  Identities=24%  Similarity=0.337  Sum_probs=237.5

Q ss_pred             eeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            3 MLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         3 ~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      ++..|+++++.+.   .++..+++.++++++|.+.++|+++..+........  ..++++|.++++|+++++.+++++.+
T Consensus       205 ~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~--~~~~~l~~i~~~G~~l~~~~~~~~~~  282 (503)
T PRK04813        205 TLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNE--EHLPNLTHFLFCGEELPHKTAKKLLE  282 (503)
T ss_pred             HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCc--ccCCCceEEEEecCcCCHHHHHHHHH
Confidence            5678999998875   578999999999999999999999987765533222  25778999999999999999999999


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                      .|+++++++.||+||++..++..........                  .....++|.|.+++++++++++     .++.
T Consensus       283 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~------------------~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~  344 (503)
T PRK04813        283 RFPSATIYNTYGPTEATVAVTSIEITDEMLD------------------QYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQ  344 (503)
T ss_pred             HCCCceEEeCcccchheeEEEEEEecccccc------------------cCCCCcccccCCCCEEEEECCCCCCCCCCCc
Confidence            9988999999999999865543322211100                  0133368999999999998866     4778


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCc
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI  231 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v  231 (334)
                      |||+++|+.++.||+++++.+...|   ++.+||+|||++++ ++|++++.||.+|+|+.+|++++|.+||+++.++|.|
T Consensus       345 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v  423 (503)
T PRK04813        345 GEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYV  423 (503)
T ss_pred             eEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCc
Confidence            9999999999999999988877655   34569999999999 8999999999999999999999999999999999999


Q ss_pred             ceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCC
Q 019921          232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTST  311 (334)
Q Consensus       232 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~  311 (334)
                      .+++|++.++...++.+++++++++... .           ......+++++++++ .++.+++|+.+.++ ++||+|++
T Consensus       424 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~-----------~~~~~~~~l~~~~~~-~l~~~~~P~~i~~~-~~~P~t~~  489 (503)
T PRK04813        424 ESAVVVPYNKDHKVQYLIAYVVPKEEDF-E-----------REFELTKAIKKELKE-RLMEYMIPRKFIYR-DSLPLTPN  489 (503)
T ss_pred             ceEEEEEeeCCCCccEEEEEEEeccccc-c-----------ccchhHHHHHHHHHh-hCccccCCeEEEEe-ccCCCCCC
Confidence            9999999887777778888888765310 0           011234678899998 79999999998875 78999999


Q ss_pred             CccchHHHHHHHHh
Q 019921          312 GKIRRDEVRREVMS  325 (334)
Q Consensus       312 GKv~r~~l~~~~~~  325 (334)
                      ||++|++|++++++
T Consensus       490 gKv~r~~l~~~~~~  503 (503)
T PRK04813        490 GKIDRKALIEEVNK  503 (503)
T ss_pred             CCCcHHHHHHHhcC
Confidence            99999999998753

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.5e-40  Score=316.28  Aligned_cols=286  Identities=24%  Similarity=0.355  Sum_probs=235.5

Q ss_pred             eeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            3 MLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         3 ~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      ++..|+++++.. .+++..+++.++++++|.+.++|+++..|.+.......  .+++||.+++||++++++++++|++ +
T Consensus       241 ~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~--~~~~lr~~~~~G~~l~~~~~~~~~~-~  317 (542)
T PRK06018        241 APSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGL--KLPHLKMVVCGGSAMPRSMIKAFED-M  317 (542)
T ss_pred             hhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCC--CcccceEEEEcCCCCCHHHHHHHHH-h
Confidence            467799888764 57899999999999999999999999998876544332  4678999999999999999999999 7


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCC-------Cce
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SHV  154 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~-------g~~  154 (334)
                       ++++++.||+||++.+++............            .........++|.|.++++++++|++.       ++.
T Consensus       318 -~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~  384 (542)
T PRK06018        318 -GVEVRHAWGMTEMSPLGTLAALKPPFSKLP------------GDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTF  384 (542)
T ss_pred             -CCCeEeeecccccCcccccccCccccccCC------------chhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCce
Confidence             999999999999997655432211100000            000000123589999999999998751       256


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceE
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI  234 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  234 (334)
                      |||+++|++++.||++.   +...++.++||+|||+++++++|++++.||.+|+|+.+|.+++|.+||+++.++|.|.++
T Consensus       385 Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~  461 (542)
T PRK06018        385 GRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEA  461 (542)
T ss_pred             eEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeE
Confidence            99999999999999983   233445789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCcc
Q 019921          235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI  314 (334)
Q Consensus       235 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv  314 (334)
                      +|++.+++..++.+.+++++.++                ...+.+.+.+++++ .++.+++|+.+.++ ++||+|++||+
T Consensus       462 ~v~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~v-~~iP~t~~GKi  523 (542)
T PRK06018        462 AVIGVYHPKWDERPLLIVQLKPG----------------ETATREEILKYMDG-KIAKWWMPDDVAFV-DAIPHTATGKI  523 (542)
T ss_pred             EEEeccCCCcCceeEEEEEeCCC----------------CCCCHHHHHHHHHh-hCccccCCcEEEEe-ccCCCCCcchh
Confidence            99999998878888888887765                12445789999999 79999999998875 78999999999


Q ss_pred             chHHHHHHHHh
Q 019921          315 RRDEVRREVMS  325 (334)
Q Consensus       315 ~r~~l~~~~~~  325 (334)
                      +|++|++.+.+
T Consensus       524 ~r~~L~~~~~~  534 (542)
T PRK06018        524 LKTALREQFKD  534 (542)
T ss_pred             hHHHHHHHHhc
Confidence            99999999876

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=7.3e-41  Score=321.22  Aligned_cols=275  Identities=28%  Similarity=0.500  Sum_probs=232.9

Q ss_pred             eeccceEEEc-CCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            4 LMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         4 l~~G~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +..|++.++. ...++..+++.++++++|++.++|+++..+.+......  .++++||.+++||+++++++.+.+++.+ 
T Consensus       277 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~l~~lr~v~~gG~~~~~~~~~~~~~~~-  353 (560)
T PRK08751        277 MKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQ--IDFSSLKMTLGGGMAVQRSVAERWKQVT-  353 (560)
T ss_pred             hhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCC--cchhhheeeeeCCCCCCHHHHHHHHHHh-
Confidence            3456666554 45789999999999999999999999988876533222  2467899999999999999999999988 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      ++.+++.||+||++..++........                      ..+++|.|.+++.++++|++     .++.|||
T Consensus       354 ~~~~~~~YG~tE~~~~~~~~~~~~~~----------------------~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel  411 (560)
T PRK08751        354 GLTLVEAYGLTETSPAACINPLTLKE----------------------YNGSIGLPIPSTDACIKDDAGTVLAIGEIGEL  411 (560)
T ss_pred             CCeEEEeeccccCCCceecccccccc----------------------cCCCcCccCCCceEEEECCCCCCCCCCCceEE
Confidence            89999999999998754432211100                      22358999999999999865     5678999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|+.++.||+++++.+...+..++||+|||+++++++|+++++||.+|+|+.+|.+++|.+||++|..+++|.+++|+
T Consensus       412 ~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~  491 (560)
T PRK08751        412 CIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAV  491 (560)
T ss_pred             EEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEE
Confidence            99999999999999999888887889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      ++++...++.+.++++....                 ....+++++.+++ .++.+++|..+.++ ++||+|++||++|+
T Consensus       492 ~~~~~~~ge~~~~~v~~~~~-----------------~~~~~~l~~~~~~-~l~~~~~P~~v~~v-~~lP~t~~gKv~r~  552 (560)
T PRK08751        492 GVPDEKSGEIVKVVIVKKDP-----------------ALTAEDVKAHARA-NLTGYKQPRIIEFR-KELPKTNVGKILRR  552 (560)
T ss_pred             ecCCCCCCceEEEEEEcCCC-----------------CCCHHHHHHHHHH-hhhhccCCeEEEEh-hhCCCCccccccHH
Confidence            99988777777777764432                 2346788899999 79999999998875 78999999999999


Q ss_pred             HHHHH
Q 019921          318 EVRRE  322 (334)
Q Consensus       318 ~l~~~  322 (334)
                      +|++.
T Consensus       553 ~L~~~  557 (560)
T PRK08751        553 ELRDA  557 (560)
T ss_pred             HHHHh
Confidence            99876

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.7e-41  Score=328.49  Aligned_cols=300  Identities=19%  Similarity=0.198  Sum_probs=227.1

Q ss_pred             ceeeccceEEEcCC-CCH---HHHHHHHHhhcceEEEechHHHHHHHHHHhhccc--cCCCCCccEEEeccCCCCHHHHH
Q 019921            2 AMLMVGACHVFIPK-FES---KSALEAVEQHCVTSLITVPAIMADLATLIRVKKT--WKGRDSVKKILNGGGGLPSELMK   75 (334)
Q Consensus         2 ~~l~~G~~~v~~~~-~~~---~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~~~~lr~i~~gG~~l~~~~~~   75 (334)
                      .++++|+++++.+. +++   ..+++.++++++|+++++|+++..|++.......  ...+++||.+++||+++++++.+
T Consensus       273 ~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~  352 (614)
T PRK08180        273 IVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWD  352 (614)
T ss_pred             HHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHH
Confidence            35788999998763 444   4678899999999999999999998876433221  12367999999999999999999


Q ss_pred             HHHhh----CC-CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC
Q 019921           76 EATNS----FP-KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG  150 (334)
Q Consensus        76 ~~~~~----~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~  150 (334)
                      ++.+.    ++ ++++++.||+||++..++.......                       ..+++|+|+|+++++++++ 
T Consensus       353 ~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~-----------------------~~~svG~p~pg~~v~i~d~-  408 (614)
T PRK08180        353 RLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLS-----------------------RAGNIGLPAPGCEVKLVPV-  408 (614)
T ss_pred             HHHHHHHhhcCCCceeeeeecccccCCceEecccccC-----------------------CCCcccCccCCcEEEEecC-
Confidence            99875    31 3789999999999865543321110                       2346999999999999875 


Q ss_pred             CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEE----cCCCcEEEeeccCceee-eCceeeC--hHHHHH
Q 019921          151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSI----DDGGNVWLVGRRNGRIK-SGGENVY--PEEVEA  223 (334)
Q Consensus       151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~----~~~G~l~~~GR~~d~i~-~~G~~v~--~~~iE~  223 (334)
                       ++.|||+++|++++.||+++++.+...|+.+|||+|||+|++    |++|+++|+||.+|+|+ .+|++++  |.++|.
T Consensus       409 -~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~  487 (614)
T PRK08180        409 -GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARA  487 (614)
T ss_pred             -CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHH
Confidence             345999999999999999999999888888999999999999    46899999999998888 7899877  778888


Q ss_pred             HHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcc--------c
Q 019921          224 VLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK--------A  295 (334)
Q Consensus       224 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~--------~  295 (334)
                      ++.+||.|.+++|++.+++    .+.++|++.++......... ...........++|++++.+ .+..++        +
T Consensus       488 ~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~  561 (614)
T PRK08180        488 VSAGAPLVQDVVITGHDRD----EIGLLVFPNLDACRRLAGLL-ADASLAEVLAHPAVRAAFRE-RLARLNAQATGSSTR  561 (614)
T ss_pred             HhhcCchhheEEEEcCCCC----ceEEEEEcCHHHHHHHHhhc-ccCCHHHHhcCHHHHHHHHH-HHHHHHhhccccHhh
Confidence            8899999999999998765    36788887654100000000 00000011223445555555 344444        8


Q ss_pred             ceEEEeccCCccCC------CCCccchHHHHHHHHhhcccCCCC
Q 019921          296 PRLFVLWRKPFPLT------STGKIRRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       296 p~~~~~~~~~lP~t------~~GKv~r~~l~~~~~~~~~~l~~~  333 (334)
                      |+.+.++ +.+|+|      ++||+.|+.+.+.|+++|+.+|..
T Consensus       562 p~~~~~~-~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~~  604 (614)
T PRK08180        562 VARALLL-DEPPSLDAGEITDKGYINQRAVLARRAALVEALYAD  604 (614)
T ss_pred             eeEEEEe-cCCCCCccCccCccccccHHHHHHHhHHHHHHHhCC
Confidence            9888776 668855      577999999999999999999975

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.4e-41  Score=327.89  Aligned_cols=304  Identities=24%  Similarity=0.255  Sum_probs=232.0

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccc------------------------------
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT------------------------------   52 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~------------------------------   52 (334)
                      ++..|+++++... ++..+++.|+++++|++.++|.+++.+.+.......                              
T Consensus       287 ~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (660)
T PLN02430        287 FFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKA  365 (660)
T ss_pred             HHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            3567888877654 788999999999999999999999877653211000                              


Q ss_pred             c------------C-CCCCccEEEeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcc
Q 019921           53 W------------K-GRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF  119 (334)
Q Consensus        53 ~------------~-~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~  119 (334)
                      .            . ..++||.+++||+++++++.++++... ++.+++.||+||+++.++.....+..           
T Consensus       366 ~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~-----------  433 (660)
T PLN02430        366 SPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTS-CAFVVQGYGLTETLGPTTLGFPDEMC-----------  433 (660)
T ss_pred             chhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhc-CCCeeeecchhhhhhceEeeccccCC-----------
Confidence            0            0 015899999999999999877665543 57899999999998765543221110           


Q ss_pred             cCCCCCCCCCCCceeeccccCcceEEEeeCC--------CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceE
Q 019921          120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIG  191 (334)
Q Consensus       120 ~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~--------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~  191 (334)
                                 .++++|.|.|++++++++.+        .++.|||+|+|++++.||+++++.+...+ .+|||+|||+|
T Consensus       434 -----------~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig  501 (660)
T PLN02430        434 -----------MLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIG  501 (660)
T ss_pred             -----------CCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceeccceE
Confidence                       23469999999999997621        23469999999999999999999998888 58999999999


Q ss_pred             EEcCCCcEEEeeccCceee-eCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCcccccccccc---
Q 019921          192 SIDDGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQ---  267 (334)
Q Consensus       192 ~~~~~G~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---  267 (334)
                      ++++||++++.||.+|+|| .+|++|+|.+||++|.+||.|.+++|++.   ..++.++|+|++.++..........   
T Consensus       502 ~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~  578 (660)
T PLN02430        502 EILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGD---SFKSMLVAVVVPNEENTNKWAKDNGFTG  578 (660)
T ss_pred             EECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEec---CCcceEEEEEEcCHHHHHHHHHhCCCCC
Confidence            9999999999999999999 57999999999999999999999999983   2356788999887542111000000   


Q ss_pred             c-----cchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc-----CCCCCccchHHHHHHHHhhcccCCCCC
Q 019921          268 S-----SKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSNL  334 (334)
Q Consensus       268 ~-----~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~l~~~~  334 (334)
                      .     ...+-.....+++.+..++..++.|..++.+.+..++|-     +|+++|+.|+.+.+.|.+.|++||.++
T Consensus       579 ~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~~  655 (660)
T PLN02430        579 SFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYRKL  655 (660)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHHHHhh
Confidence            0     001111222345555554447999999999988766664     999999999999999999999999763

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-40  Score=315.44  Aligned_cols=283  Identities=24%  Similarity=0.315  Sum_probs=235.4

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEecc-CCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGG-GGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG-~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+...   ....++++|.+..+| .+...++.+++.+.
T Consensus       242 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  318 (540)
T PRK06164        242 GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG---ERADFPSARLFGFASFAPALGELAALARAR  318 (540)
T ss_pred             HHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc---ccCCCcceeeeeeccCCcchHHHHHHHhhc
Confidence            45778999999988999999999999999999999999999887722   223578898887765 56667788877765


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeecccc-CcceEEEeeCC------CCc
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG------SSH  153 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~------~g~  153 (334)
                        ++++++.||+||++..++..........                    ...+.|.|+ +++.++++|++      .|+
T Consensus       319 --~~~~~~~YG~tE~~~~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~  376 (540)
T PRK06164        319 --GVPLTGLYGSSEVQALVALQPATDPVSV--------------------RIEGGGRPASPEARVRARDPQDGALLPDGE  376 (540)
T ss_pred             --CCceecceeeccccceeeccCCCCCCcc--------------------eeccCccccCCCeEEEEecCCCCcCCCCCC
Confidence              8999999999999875544332211100                    112357775 78999998854      578


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcce
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG  233 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  233 (334)
                      .|||+++|++++.||+++++.+...+..++||+|||+|+++++|.+++.||.+|+|+.+|++++|.+||++|.++++|.+
T Consensus       377 ~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~  456 (540)
T PRK06164        377 SGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAA  456 (540)
T ss_pred             eeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCcee
Confidence            89999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCC-
Q 019921          234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTG-  312 (334)
Q Consensus       234 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~G-  312 (334)
                      ++|++++.. .++.++++++++++                .....+++.+++++ .++.+++|..+.++ +.+|+|++| 
T Consensus       457 ~~v~~~~~~-~~~~~~~~vv~~~~----------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~~-~~~P~t~~g~  517 (540)
T PRK06164        457 AQVVGATRD-GKTVPVAFVIPTDG----------------ASPDEAGLMAACRE-ALAGFKVPARVQVV-EAFPVTESAN  517 (540)
T ss_pred             EEEEecCCC-CceeEEEEEEeCCC----------------CCCCHHHHHHHHHh-hcccCcCCcEEEEe-cCCCCCCCCc
Confidence            999998854 45678888887654                12456789999999 79999999998775 789999999 


Q ss_pred             --ccchHHHHHHHHhhcc
Q 019921          313 --KIRRDEVRREVMSHLK  328 (334)
Q Consensus       313 --Kv~r~~l~~~~~~~~~  328 (334)
                        |++|++|++++.+.++
T Consensus       518 ~~Ki~r~~L~~~~~~~~~  535 (540)
T PRK06164        518 GAKIQKHRLREMAQARLA  535 (540)
T ss_pred             cccccHHHHHHHHHHhhh
Confidence              9999999999876654

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=6.5e-41  Score=378.50  Aligned_cols=279  Identities=23%  Similarity=0.323  Sum_probs=238.5

Q ss_pred             CceeeccceEEEcC---CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            1 MAMLMVGACHVFIP---KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         1 l~~l~~G~~~v~~~---~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      |.+|++|+++++.+   .+++..+++.++++++|++.++|++++.|++....    ..+++||.+++|||++++++.+.+
T Consensus       715 ~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~gGe~l~~~~~~~~  790 (5163)
T PRK12316        715 FWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV----ASCTSLRRIVCSGEALPADAQEQV  790 (5163)
T ss_pred             HHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc----ccCCCccEEEEeeccCCHHHHHHH
Confidence            35788999999985   37899999999999999999999999988764321    247789999999999999999999


Q ss_pred             HhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CC
Q 019921           78 TNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SS  152 (334)
Q Consensus        78 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g  152 (334)
                      .+.++++++++.||+||++..++........                     ....++|+|+++++++|+|++     .|
T Consensus       791 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~---------------------~~~~~iG~p~~~~~~~i~d~~~~~~p~G  849 (5163)
T PRK12316        791 FAKLPQAGLYNLYGPTEAAIDVTHWTCVEEG---------------------GDSVPIGRPIANLACYILDANLEPVPVG  849 (5163)
T ss_pred             HHhCCCCeEEeCcCcChheeeeeEEeccccc---------------------CCCCCCccccCCCEEEEECCCCCCCCCC
Confidence            8888789999999999998654433221110                     023369999999999999876     58


Q ss_pred             ceeEEEEcCcchhhhhhhcccCCCCcc------CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          153 HVGRILTRGAHVMLRYWDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       153 ~~Gel~v~g~~~~~gy~~~~~~~~~~~------~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      +.|||+|+|++++.||+++++.+...|      ++++||+|||++++++||+++|+||.||+||++|++|+|.+||++|.
T Consensus       850 ~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~  929 (5163)
T PRK12316        850 VLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLL  929 (5163)
T ss_pred             CceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHH
Confidence            899999999999999999999988776      34579999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      +||+|.+++|++.+    ++.++++|++.+.                .....+.+++++++ .++.|++|..++++ ++|
T Consensus       930 ~~p~V~~a~V~~~~----~~~lva~vv~~~~----------------~~~~~~~l~~~l~~-~Lp~y~vP~~i~~v-~~l  987 (5163)
T PRK12316        930 EHPWVREAAVLAVD----GKQLVGYVVLESE----------------GGDWREALKAHLAA-SLPEYMVPAQWLAL-ERL  987 (5163)
T ss_pred             hCCCcceEEEEEcC----CCeEEEEEEccCC----------------CCCCHHHHHHHHHh-hCCCccCCCeEEEH-hhC
Confidence            99999999999975    5679999987764                12456789999999 79999999999875 789


Q ss_pred             cCCCCCccchHHHHHHHHhh
Q 019921          307 PLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~~  326 (334)
                      |+|++||++|++|.+.....
T Consensus       988 P~t~~GKidr~~L~~~~~~~ 1007 (5163)
T PRK12316        988 PLTPNGKLDRKALPAPEASV 1007 (5163)
T ss_pred             CCCCCCChhHHhhcCccccc
Confidence            99999999999998765443

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.4e-40  Score=298.72  Aligned_cols=258  Identities=27%  Similarity=0.394  Sum_probs=218.3

Q ss_pred             eeeccceEEEc---CCCCHHHHHHHHHhhc--ceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            3 MLMVGACHVFI---PKFESKSALEAVEQHC--VTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         3 ~l~~G~~~v~~---~~~~~~~~~~~l~~~~--vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      +++.|+++++.   ..+++..+++.+++++  .++...+|+.+..++....   ....++++|.+++||+++++++.+++
T Consensus        95 ~l~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~---~~~~~~~l~~i~~gG~~l~~~~~~~~  171 (358)
T PRK07824         95 SVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA---ATAALAELDAVLVGGGPAPAPVLDAA  171 (358)
T ss_pred             HHHcCCeEEecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc---ccCCcccceEEEECCCCCCHHHHHHH
Confidence            45678888773   3588999999999998  5667778887766554322   11247789999999999999999999


Q ss_pred             HhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEE
Q 019921           78 TNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRI  157 (334)
Q Consensus        78 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel  157 (334)
                      .+ + ++++++.||+||++..+.                                 ..|.|++++++++.+      ||+
T Consensus       172 ~~-~-~~~v~~~YG~TE~~~~~~---------------------------------~~G~~~~g~~v~i~~------Gei  210 (358)
T PRK07824        172 AA-A-GINVVRTYGMSETSGGCV---------------------------------YDGVPLDGVRVRVED------GRI  210 (358)
T ss_pred             Hh-c-CCcEEecccCCccCCCcC---------------------------------cCceeCCCCEEEecC------CEE
Confidence            86 4 899999999999875321                                 258899999999833      999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|+.++.||++++...  .+..++||+|||++++ ++|.+++.||.||+|+.+|++|+|.+||++|.+||.|.+++|+
T Consensus       211 ~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv  287 (358)
T PRK07824        211 ALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVF  287 (358)
T ss_pred             EEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence            999999999999988754  3445689999999999 8899999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +.+++..++.++++++....                .....+++++++++ .++.+++|..+.++ ++||+|++||++|+
T Consensus       288 ~~~~~~~g~~~~a~v~~~~~----------------~~~~~~~i~~~~~~-~l~~~~~P~~i~~v-~~lP~t~~GKi~r~  349 (358)
T PRK07824        288 GLPDDRLGQRVVAAVVGDGG----------------PAPTLEALRAHVAR-TLDRTAAPRELHVV-DELPRRGIGKVDRR  349 (358)
T ss_pred             ecCCCCCceEEEEEEEeCCC----------------CCcCHHHHHHHHHh-hCccccCCCEEEEe-cCCCCCCCccccHH
Confidence            99998888889998876543                12456789999999 79999999998875 78999999999999


Q ss_pred             HHHHHHHh
Q 019921          318 EVRREVMS  325 (334)
Q Consensus       318 ~l~~~~~~  325 (334)
                      +|++++.+
T Consensus       350 ~L~~~~~~  357 (358)
T PRK07824        350 ALVRRFAG  357 (358)
T ss_pred             HHHHHhhc
Confidence            99998865

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.5e-41  Score=326.15  Aligned_cols=306  Identities=18%  Similarity=0.283  Sum_probs=228.4

Q ss_pred             eeeccceEEEcCC--C--CHHHHHHHHHhhcc---eEEEechHHHHHHHHHHhhc---cccCCCCCccEEEeccCCCCHH
Q 019921            3 MLMVGACHVFIPK--F--ESKSALEAVEQHCV---TSLITVPAIMADLATLIRVK---KTWKGRDSVKKILNGGGGLPSE   72 (334)
Q Consensus         3 ~l~~G~~~v~~~~--~--~~~~~~~~l~~~~v---t~~~~~P~~~~~l~~~~~~~---~~~~~~~~lr~i~~gG~~l~~~   72 (334)
                      +++.|++++++++  +  ++..+++.++++++   +.+.++|+++..+.......   ....++++||.+++||++++++
T Consensus       242 ~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~  321 (631)
T PRK07769        242 PALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPA  321 (631)
T ss_pred             HHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHH
Confidence            4567898888753  4  89999999999986   78999999887766532111   1123578999999999999999


Q ss_pred             HHHHHHhhCC-----CCceEcccccccccccccccccCCCCCC-CCCC--CC-CcccCCCCCCCCCCCceeeccccCcce
Q 019921           73 LMKEATNSFP-----KAKLISAYGMTETSSSLTFMTLYDPTLE-TPGQ--LP-QAFGNVTPNSVHQPQGVCVGKPAPHVE  143 (334)
Q Consensus        73 ~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~~~~-~~~~--~~-~~~~~~~~~~~~~~~~~~~g~p~~~~~  143 (334)
                      ++++|.+.|+     ...+++.||+||++..++.......... ....  .. .....+.+.........++|+|.++..
T Consensus       322 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~  401 (631)
T PRK07769        322 SMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEW  401 (631)
T ss_pred             HHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcE
Confidence            9999999872     2469999999999765443321110000 0000  00 000000000001112357999999999


Q ss_pred             EEEeeCC------CCceeEEEEcCcchhhhhhhcccCCCCccC-----------------CCceEeccceEEEcCCCcEE
Q 019921          144 LKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVST-----------------GEVWLDTGDIGSIDDGGNVW  200 (334)
Q Consensus       144 ~~i~~~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------------~~~~~~TGDl~~~~~~G~l~  200 (334)
                      ++++|++      .|+.|||+++|++++.||+++++.+...|.                 .++||+|||+|+++ ||+++
T Consensus       402 ~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~  480 (631)
T PRK07769        402 AVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELY  480 (631)
T ss_pred             EEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEE
Confidence            9999853      578999999999999999999988876653                 35899999999995 89999


Q ss_pred             EeeccCceeeeCceeeChHHHHHHHhc-CCCcce--EEEEEEec-------------------CcceeEEEEEEEeccCc
Q 019921          201 LVGRRNGRIKSGGENVYPEEVEAVLLQ-HPGIIG--IVVVGIAN-------------------ARLTEMVVACVRLRESW  258 (334)
Q Consensus       201 ~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~-------------------~~~~~~~~~~v~~~~~~  258 (334)
                      |+||.||+||++|++|+|.+||++|.+ ||.|.+  ++|+++++                   +..++.++++|++.++.
T Consensus       481 i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~  560 (631)
T PRK07769        481 ITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGA  560 (631)
T ss_pred             EEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcc
Confidence            999999999999999999999999996 899998  89999988                   45678899999877641


Q ss_pred             cccccccccccchhhhhccHHHHHHHHHhcCCCC-cc-cceEEEecc-CCccCCCCCccchHHHHHHHHh
Q 019921          259 QWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG-FK-APRLFVLWR-KPFPLTSTGKIRRDEVRREVMS  325 (334)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~-~~-~p~~~~~~~-~~lP~t~~GKv~r~~l~~~~~~  325 (334)
                                     ...+.++|.+++++ .+.. ++ .|+.++++. ++||+|++|||+|++|++.+.+
T Consensus       561 ---------------~~~~~~~l~~~~~~-~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~  614 (631)
T PRK07769        561 ---------------HKLDPQPIADDIRA-AIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD  614 (631)
T ss_pred             ---------------ccccHHHHHHHHHH-HHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence                           01346788899998 5774 56 477776654 3799999999999999988653

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=8e-41  Score=372.55  Aligned_cols=283  Identities=20%  Similarity=0.286  Sum_probs=240.0

Q ss_pred             CceeeccceEEEcCC--CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            1 MAMLMVGACHVFIPK--FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         1 l~~l~~G~~~v~~~~--~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      |.+|++|+|+++.+.  +++..+++.|+++++|++.++|+++..+++....    ..+++||.+++|||+++++++++|.
T Consensus      3297 ~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----~~~~~lr~~~~gGe~~~~~~~~~~~ 3372 (3956)
T PRK12467       3297 LWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG----ADCASLDIYVFGGEAVPPAAFEQVK 3372 (3956)
T ss_pred             HHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc----cCCCCceEEEEecCCCCHHHHHHHH
Confidence            357899999999875  7899999999999999999999999988764321    2467899999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +.++++++++.||+||++..++..........                  .....++|+|+++++++|+|++     .|+
T Consensus      3373 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~ 3434 (3956)
T PRK12467       3373 RKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVC------------------EAPYAPIGRPVAGRSIYVLDGQLNPVPVGV 3434 (3956)
T ss_pred             HhCCCCEEEeCcccchhEeeeEEEeccccccc------------------CCCCCCCccccCCCEEEEECCCCCCCCCCC
Confidence            98888999999999999876654433111100                  0023469999999999999866     688


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccCCC-------ceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVSTGE-------VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~-------~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      +|||+|+|+.+++||+++++.|...|..+       +||+|||+|++++||+++++||.||+||++|++|.|.+||++|.
T Consensus      3435 ~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~ 3514 (3956)
T PRK12467       3435 AGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLL 3514 (3956)
T ss_pred             CceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHh
Confidence            99999999999999999999998887543       56999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      ++|+|.+++|++..+ ..++.++++++....                .....+.+++++++ .++.|++|..++++ ++|
T Consensus      3515 ~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~----------------~~~~~~~l~~~l~~-~Lp~y~vP~~~~~l-~~l 3575 (3956)
T PRK12467       3515 QHPSVREAVVLARDG-AGGKQLVAYVVPADP----------------QGDWRETLRDHLAA-SLPDYMVPAQLLVL-AAM 3575 (3956)
T ss_pred             hCcccceEEEEEecC-CCCcEEEEEEeCCCC----------------CcccHHHHHHHHhc-cCChhhCCCeeeee-ccC
Confidence            999999999998754 446788998886653                12456789999999 79999999998765 789


Q ss_pred             cCCCCCccchHHHHHHHH
Q 019921          307 PLTSTGKIRRDEVRREVM  324 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~  324 (334)
                      |+|++||++|++|.+...
T Consensus      3576 P~t~~GKidR~~L~~~~~ 3593 (3956)
T PRK12467       3576 PLGPNGKVDRKALPDPDA 3593 (3956)
T ss_pred             CCCCCCccchhhcCCCCc
Confidence            999999999999986543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=6.6e-40  Score=337.94  Aligned_cols=280  Identities=21%  Similarity=0.265  Sum_probs=234.2

Q ss_pred             ceeeccceEEEcCC-CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++.+. .+...+.+.++++++|++.++|+++..+.+...    ..+++++|.+++||+++++++.+.+.+.
T Consensus       855 ~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----~~~~~~lr~v~~gg~~l~~~~~~~~~~~  930 (1140)
T PRK06814        855 LPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH----PYDFRSLRYVFAGAEKVKEETRQTWMEK  930 (1140)
T ss_pred             HHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----cccccceeEEEEcCCcCCHHHHHHHHHH
Confidence            35778999998875 567788999999999999999999988876531    1347789999999999999999999999


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-CCceeEEEE
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-SSHVGRILT  159 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-~g~~Gel~v  159 (334)
                      + ++++++.||+||++..++.......                       ...++|+|.|++++++.+.+ .++.|||++
T Consensus       931 ~-~~~~~~~YG~TE~~~~~~~~~~~~~-----------------------~~~~vG~p~~g~~~~~~~~~~~~~~Gel~v  986 (1140)
T PRK06814        931 F-GIRILEGYGVTETAPVIALNTPMHN-----------------------KAGTVGRLLPGIEYRLEPVPGIDEGGRLFV  986 (1140)
T ss_pred             h-CCcEEeccccccccceEEecCCCCC-----------------------CCCcCCccCCCCeEEEeecCCCCCceEEEE
Confidence            8 8999999999999876543221110                       23369999999999998765 367899999


Q ss_pred             cCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEE
Q 019921          160 RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI  239 (334)
Q Consensus       160 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  239 (334)
                      +|++++.||++++.........+|||+|||++++|+||++++.||.||+||++|++|+|.+||+++.+++.+.+++|+++
T Consensus       987 ~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~ 1066 (1140)
T PRK06814        987 RGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSI 1066 (1140)
T ss_pred             eCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEc
Confidence            99999999998765433222367999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHH
Q 019921          240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV  319 (334)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l  319 (334)
                      +++..++.+++++. ..                  ..+.+++.+++++..++.+++|..+.++ ++||+|++||++|++|
T Consensus      1067 ~~~~~g~~~~~~~~-~~------------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~lP~t~~GKi~r~~L 1126 (1140)
T PRK06814       1067 PDARKGERIILLTT-AS------------------DATRAAFLAHAKAAGASELMVPAEIITI-DEIPLLGTGKIDYVAV 1126 (1140)
T ss_pred             ccCCCCceEEEEEc-CC------------------CcCHHHHHHHHHHcCCCcccCCcEEEEe-cCcCCCCCCCCcHHHH
Confidence            99888887776653 11                  1345778888887469999999998875 7899999999999999


Q ss_pred             HHHHHhhccc
Q 019921          320 RREVMSHLKS  329 (334)
Q Consensus       320 ~~~~~~~~~~  329 (334)
                      ++++.+.+..
T Consensus      1127 ~~~~~~~~~~ 1136 (1140)
T PRK06814       1127 TKLAEEAAAK 1136 (1140)
T ss_pred             HHHHHHhhcc
Confidence            9998887654

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=4.7e-40  Score=343.07  Aligned_cols=285  Identities=20%  Similarity=0.299  Sum_probs=234.0

Q ss_pred             ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .+|..|+++++.+.   .++..+++.++++++|++.++|+++..+++..........++++|.+++||+++++++.+.|.
T Consensus       659 ~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~  738 (1296)
T PRK10252        659 WPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQ  738 (1296)
T ss_pred             HHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHH
Confidence            46789999999763   689999999999999999999999998887643332222457899999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +.+ ++++++.||+||++..++............                .....++|.|++++.++|+|++     .|+
T Consensus       739 ~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~----------------~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~  801 (1296)
T PRK10252        739 QLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAV----------------RGSSVPIGYPVWNTGLRILDARMRPVPPGV  801 (1296)
T ss_pred             hcC-CCEEEeCCCcchhhheeeeeeccccccccc----------------CCCCCCcccccCCCEEEEECCCCCCCCCCC
Confidence            988 899999999999987655443222110000                0023369999999999999865     678


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccC------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhc
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVST------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ  227 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~  227 (334)
                      .|||+++|+.+++||+++++.+...|.      +++||+|||+|++++||.++++||.||+||++|++|++.+||++|.+
T Consensus       802 ~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~  881 (1296)
T PRK10252        802 AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQA  881 (1296)
T ss_pred             ceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHh
Confidence            899999999999999999998887764      34699999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEEe------cCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEe
Q 019921          228 HPGIIGIVVVGIA------NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVL  301 (334)
Q Consensus       228 ~~~v~~~~v~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~  301 (334)
                      +|+|.+++|+++.      .......++++++....                ...+.++|++++++ .++.|++|..++.
T Consensus       882 ~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~----------------~~~~~~~l~~~l~~-~Lp~~~~P~~~~~  944 (1296)
T PRK10252        882 LPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG----------------LPLDTSALQAQLRE-RLPPHMVPVVLLQ  944 (1296)
T ss_pred             CccccceEEEEEeccccccCCCCccEEEEEEEcCCC----------------CCCCHHHHHHHHHh-hCchhcCCcEEEE
Confidence            9999999887653      11222368888876553                12356789999999 7999999999877


Q ss_pred             ccCCccCCCCCccchHHHHH
Q 019921          302 WRKPFPLTSTGKIRRDEVRR  321 (334)
Q Consensus       302 ~~~~lP~t~~GKv~r~~l~~  321 (334)
                      + ++||+|++||++|++|.+
T Consensus       945 ~-~~lP~t~~GKidr~~L~~  963 (1296)
T PRK10252        945 L-DQLPLSANGKLDRKALPL  963 (1296)
T ss_pred             e-cCCCCCCCcChhHHhcCC
Confidence            5 789999999999999865

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.7e-40  Score=375.07  Aligned_cols=285  Identities=21%  Similarity=0.262  Sum_probs=241.6

Q ss_pred             CceeeccceEEEcCC--CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            1 MAMLMVGACHVFIPK--FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         1 l~~l~~G~~~v~~~~--~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      |++|++|+|+++.+.  +++..+++.++++++|+++++|+++..+........   ...+||.+++|||++++++++.|.
T Consensus      2206 ~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---~~~~lr~~~~gGe~l~~~~~~~~~ 2282 (5163)
T PRK12316       2206 FHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG---RPPAVRVYCFGGEAVPAASLRLAW 2282 (5163)
T ss_pred             HHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc---CCcceeEEEEecccCCHHHHHHHH
Confidence            357889999987763  689999999999999999999999999887643322   245899999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +.+++.++++.||+||++..++..........                  .....++|+|+++++++|+|++     .|+
T Consensus      2283 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~iG~p~~~~~~~i~d~~~~~vp~g~ 2344 (5163)
T PRK12316       2283 EALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC------------------GAAYVPIGRALGNRRAYILDADLNLLAPGM 2344 (5163)
T ss_pred             HhCCCcEEEECccchhheeeeeeeeccccccc------------------CCCcCCcccccCCCEEEEECCCCCCCCCCC
Confidence            98878999999999999876554332211100                  0012369999999999999876     688


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccC-------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVST-------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~-------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      +|||+|+|+++++||+++++.|...|.       +++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.
T Consensus      2345 ~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~ 2424 (5163)
T PRK12316       2345 AGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQ 2424 (5163)
T ss_pred             eeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHh
Confidence            999999999999999999999888773       3579999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      ++|+|.+++|++.++. .++.++++|++...                .....+++++++++ .++.|++|..++++ ++|
T Consensus      2425 ~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~----------------~~~~~~~l~~~l~~-~Lp~~~vP~~~~~l-~~l 2485 (5163)
T PRK12316       2425 AHPAVREAVVVAQDGA-SGKQLVAYVVPDDA----------------AEDLLAELRAWLAA-RLPAYMVPAHWVVL-ERL 2485 (5163)
T ss_pred             hCcccceEEEEEEecC-CCeEEEEEEEecCC----------------CccCHHHHHHHHHh-hCchhcCcceEeee-ccc
Confidence            9999999999998766 57789999987764                12457889999999 79999999999875 789


Q ss_pred             cCCCCCccchHHHHHHHHh
Q 019921          307 PLTSTGKIRRDEVRREVMS  325 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~  325 (334)
                      |+|++|||+|++|.+....
T Consensus      2486 P~t~~GKidR~~L~~~~~~ 2504 (5163)
T PRK12316       2486 PLNPNGKLDRKALPKPDVS 2504 (5163)
T ss_pred             CCCCCCccCHhhcCCCccc
Confidence            9999999999999765433

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=4.2e-40  Score=314.64  Aligned_cols=275  Identities=31%  Similarity=0.428  Sum_probs=232.7

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.+++..+++.|+++++|++.++|+++..+.+......  ..++++|.+++||+++++++.+++.+.+ 
T Consensus       260 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~i~~gg~~~~~~~~~~~~~~~-  336 (541)
T TIGR03205       260 SLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEK--RDLSSLATIGSGGAPLPVEVANFFERKT-  336 (541)
T ss_pred             HHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccc--cCccccceEEEccccCCHHHHHHHHHHh-
Confidence            5678999988888999999999999999999999999998876432222  2467899999999999999999999988 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEee--CC-----CCcee
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS--DG-----SSHVG  155 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~--~~-----~g~~G  155 (334)
                      +.++++.||+||++..++........                      .+.++|.|++++.+++.+  ++     .|+.|
T Consensus       337 ~~~~~~~YG~TE~~~~~~~~~~~~~~----------------------~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~G  394 (541)
T TIGR03205       337 GLKLKSGWGMTETCSPGTGHPPEGPD----------------------KPGSIGLMLPGIELDVVSLDDPTKVLPPGEVG  394 (541)
T ss_pred             CCCeecccccccCCcccccCCCCCCC----------------------CCCCcceeccCceeEEEecCCCCccCCCCCee
Confidence            89999999999998765543221110                      223589999999988754  22     47789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|++++.||+++++.+...+. ++||+|||+++++++|+++++||.||+|+++|++++|.+||+++.+++.|.+++
T Consensus       395 el~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~  473 (541)
T TIGR03205       395 ELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVI  473 (541)
T ss_pred             EEEEecCCccccccCChhhhHhhhc-cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEE
Confidence            9999999999999999988877774 679999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++++++..++.++++++++++.               .....+.+.+++++ .++.+++|..+.++ ++||+|++||++
T Consensus       474 v~~~~~~~~~~~~~~~v~~~~~~---------------~~~~~~~l~~~~~~-~l~~~~~P~~i~~~-~~iP~t~~gK~~  536 (541)
T TIGR03205       474 VIGIPDQYRGEAAKAFVKLRPGA---------------KPFSLDELRAFLAG-KLGKHELPVAVEFV-DELPRTPVGKLS  536 (541)
T ss_pred             EEecCCcccCceEEEEEEECCCC---------------CcCCHHHHHHHHHh-hcccccCCcEEEEe-ccCCCCccccee
Confidence            99999887788888988877541               11345778999999 79999999998875 789999999999


Q ss_pred             hHHHH
Q 019921          316 RDEVR  320 (334)
Q Consensus       316 r~~l~  320 (334)
                      |++|+
T Consensus       537 r~~l~  541 (541)
T TIGR03205       537 RHELR  541 (541)
T ss_pred             HhhcC
Confidence            99874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-40  Score=324.97  Aligned_cols=299  Identities=23%  Similarity=0.278  Sum_probs=224.5

Q ss_pred             eeccceEEEcCCCCHHHHHH-------HHHhhcceEEEechHHHHHHHHHHhhcc-------------------------
Q 019921            4 LMVGACHVFIPKFESKSALE-------AVEQHCVTSLITVPAIMADLATLIRVKK-------------------------   51 (334)
Q Consensus         4 l~~G~~~v~~~~~~~~~~~~-------~l~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------   51 (334)
                      ++.|+++++.   ++..+++       .++++++|++.++|.+++.+.+......                         
T Consensus       332 l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  408 (700)
T PTZ00216        332 LARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEG  408 (700)
T ss_pred             HHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcC
Confidence            4556665552   4555554       6899999999999999988765321100                         


Q ss_pred             c--------------cCCCCCccEEEeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCC
Q 019921           52 T--------------WKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ  117 (334)
Q Consensus        52 ~--------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~  117 (334)
                      .              ....+++|.+++||+++++++.++++..+ + ++++.||+||+++..+.....+           
T Consensus       409 ~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TEt~~~~~~~~~~~-----------  475 (700)
T PTZ00216        409 KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTETVCCGGIQRTGD-----------  475 (700)
T ss_pred             CCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCcccccccccccCCCC-----------
Confidence            0              00015799999999999999999888877 6 9999999999986544322111           


Q ss_pred             cccCCCCCCCCCCCceeeccccCcceEEEeeCC-------CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccce
Q 019921          118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDI  190 (334)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl  190 (334)
                                  ...+++|.|+|+++++++|.+       +++.|||+|+|++++.||+++++.|...|+.+|||+|||+
T Consensus       476 ------------~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDi  543 (700)
T PTZ00216        476 ------------LEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDV  543 (700)
T ss_pred             ------------CCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccce
Confidence                        023479999999999999864       3457999999999999999999999999988999999999


Q ss_pred             EEEcCCCcEEEeeccCceee-eCceeeChHHHHHHHhcCCCcceE--EEEEEecCcceeEEEEEEEeccCcccccccccc
Q 019921          191 GSIDDGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGI--VVVGIANARLTEMVVACVRLRESWQWSESNCDQ  267 (334)
Q Consensus       191 ~~~~~~G~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  267 (334)
                      |++++||+++|+||.||+|| .+|++|+|.+||+++.+||.|.++  +|++.+  . ...++++|++..+..........
T Consensus       544 g~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~--~-~~~l~a~vv~~~~~~~~~~~~~~  620 (700)
T PTZ00216        544 GSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHP--A-RSYICALVLTDEAKAMAFAKEHG  620 (700)
T ss_pred             EEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEec--C-CceEEEEEecCHHHHHHHHHHcC
Confidence            99999999999999999999 999999999999999999999973  344332  2 35688888775432110000000


Q ss_pred             --------ccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc-----CCCCCccchHHHHHHHHhhcccCCCC
Q 019921          268 --------SSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       268 --------~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~l~~~  333 (334)
                              ....+-.....+.+.+..++..+..|..++.+.+..++|-     .|+++|+.|+.+++.|.+.|+++|.+
T Consensus       621 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~  699 (700)
T PTZ00216        621 IEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFAD  699 (700)
T ss_pred             CCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence                    0011111223344555555557889999999988766553     69999999999999999999999975

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.6e-40  Score=311.38  Aligned_cols=274  Identities=17%  Similarity=0.259  Sum_probs=225.6

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.+++..+++.++++++|++.++|+.+..++...+....  ..+++|. +.||+++++.. .++.+.+ 
T Consensus       215 ~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~--~~~~lr~-~~gg~~~~~~~-~~~~~~~-  289 (529)
T PRK07867        215 ALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDD--ADNPLRI-VYGNEGAPGDI-ARFARRF-  289 (529)
T ss_pred             HHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccc--cccceEE-EecCCCChHHH-HHHHHHh-
Confidence            56789999998889999999999999999999999999888765432221  2457774 56888887764 6677778 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCc---
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSH---  153 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~---  153 (334)
                      ++++++.||+||++..+......                         ..+++|.|.++  +++++++      .++   
T Consensus       290 g~~l~~~YG~TE~~~~~~~~~~~-------------------------~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~  342 (529)
T PRK07867        290 GCVVVDGFGSTEGGVAITRTPDT-------------------------PPGALGPLPPG--VAIVDPDTGTECPPAEDAD  342 (529)
T ss_pred             CCcEEEeecccccccccccCCCC-------------------------CCCCcCCCCCC--EEEEECCCCCCCCCCcccc
Confidence            89999999999998654321100                         12258999988  5666643      234   


Q ss_pred             ---------eeEEEE-cCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHH
Q 019921          154 ---------VGRILT-RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEA  223 (334)
Q Consensus       154 ---------~Gel~v-~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~  223 (334)
                               .|||++ +|++++.||+++++.+...+ .++||+|||+++++++|++++.||.||+|+++|++|+|.+||+
T Consensus       343 ~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~  421 (529)
T PRK07867        343 GRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIER  421 (529)
T ss_pred             ccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHH
Confidence                     799998 99999999999999888777 4789999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhc-CCCCcccceEEEec
Q 019921          224 VLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK-NLTGFKAPRLFVLW  302 (334)
Q Consensus       224 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~p~~~~~~  302 (334)
                      +|.++|.|.+++|++++++..++.+++++++.++                ...+.+++++++++. .++.+++|..+.++
T Consensus       422 ~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~~~~l~~~~~P~~i~~~  485 (529)
T PRK07867        422 ILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPG----------------AKFDPDAFAEFLAAQPDLGPKQWPSYVRVC  485 (529)
T ss_pred             HHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCC----------------CCCCHHHHHHHHHhhccCCcccCCeEEEEe
Confidence            9999999999999999998888999999988765                124567788888762 49999999998775


Q ss_pred             cCCccCCCCCccchHHHHHHHHhh
Q 019921          303 RKPFPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       303 ~~~lP~t~~GKv~r~~l~~~~~~~  326 (334)
                       ++||+|++||++|+.|+++....
T Consensus       486 -~~iP~t~~GKv~r~~L~~~~~~~  508 (529)
T PRK07867        486 -AELPRTATFKVLKRQLSAEGVDC  508 (529)
T ss_pred             -eccCCCCCcceeHHHHHHhcCCC
Confidence             77999999999999999877543

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-39  Score=313.13  Aligned_cols=281  Identities=27%  Similarity=0.463  Sum_probs=237.2

Q ss_pred             eeeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            3 MLMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         3 ~l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      ++..|+++++.. ..++..+++.++++++|.++++|+++..+........  ..++++|.+++||+++++.+.++|.+.+
T Consensus       272 ~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~~~~~~~~~~~~~~  349 (560)
T PRK08974        272 FIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQE--LDFSSLKLSVGGGMAVQQAVAERWVKLT  349 (560)
T ss_pred             HhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCccc--CCccceeEEEecCccCCHHHHHHHHHHh
Confidence            355777766653 4688999999999999999999999999886543222  2467899999999999999999999988


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       ++++++.||+||++..++.+......                      ...++|.|+|++.+++++++     .|+.||
T Consensus       350 -g~~~~~~YG~tE~~~~~~~~~~~~~~----------------------~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Ge  406 (560)
T PRK08974        350 -GQYLLEGYGLTECSPLVSVNPYDLDY----------------------YSGSIGLPVPSTEIKLVDDDGNEVPPGEPGE  406 (560)
T ss_pred             -CCcEEeeecccccCceeeccCCCCcc----------------------cCCccccCcCCCEEEEECCCCCCCCCCCceE
Confidence             89999999999998765544322110                      22358999999999999865     577899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+...+ .++||+|||+++++++|++++.||.+|+|+++|.+++|.+||++|.+++.|.+++|
T Consensus       407 l~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v  485 (560)
T PRK08974        407 LWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAA  485 (560)
T ss_pred             EEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEE
Confidence            99999999999999988887777 67899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.++...++.++++++....                 ....+++++++.+ .++.+.+|..+.++ ++||+|++||++|
T Consensus       486 ~~~~~~~~g~~~~~~v~~~~~-----------------~~~~~~l~~~l~~-~l~~~~~P~~~~~~-~~lP~t~~GK~~r  546 (560)
T PRK08974        486 VGVPSEVSGEAVKIFVVKKDP-----------------SLTEEELITHCRR-HLTGYKVPKLVEFR-DELPKSNVGKILR  546 (560)
T ss_pred             EeeecCCcceEEEEEEECCCC-----------------CCCHHHHHHHHHh-hcccccCCcEEEEh-hhCCCCCCCcEeH
Confidence            999988878877777764432                 1335678888888 79999999998875 7799999999999


Q ss_pred             HHHHHHHHhhcc
Q 019921          317 DEVRREVMSHLK  328 (334)
Q Consensus       317 ~~l~~~~~~~~~  328 (334)
                      +.|++....+..
T Consensus       547 ~~l~~~~~~~~~  558 (560)
T PRK08974        547 RELRDEARAKVD  558 (560)
T ss_pred             HHHHHHHHhhhc
Confidence            999998777654

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=4.2e-40  Score=366.79  Aligned_cols=290  Identities=24%  Similarity=0.326  Sum_probs=240.8

Q ss_pred             ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .+|+.|+++++.+.   .++..+++.|+++++|++.++|+++..+.+.....    ...++|.+++|||++++++.+.|.
T Consensus       717 ~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~lr~i~~gGe~l~~~~~~~~~  792 (3956)
T PRK12467        717 GALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA----LPRPQRALVCGGEALQVDLLARVR  792 (3956)
T ss_pred             HHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc----cCCcccEEEEEeecCCHHHHHHHH
Confidence            57889999999874   68999999999999999999999999987754322    245789999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +.++++++++.||+||++..++...........                   ...++|+|+++++++|+|++     .|+
T Consensus       793 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~-------------------~~~~iG~p~~~~~~~i~d~~~~~vp~G~  853 (3956)
T PRK12467        793 ALGPGARLINHYGPTETTVGVSTYELSDEERDF-------------------GNVPIGQPLANLGLYILDHYLNPVPVGV  853 (3956)
T ss_pred             HhCCCCEEEeCcCCChhhhheeeEecccccccC-------------------CCCcccCCcCCCEEEEECCCCCCCCCCC
Confidence            988789999999999999766554432211100                   12359999999999999876     588


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccC-------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVST-------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~-------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .|||+|+|+++++||+++++.+...|.       +.+||+|||++++++||.++++||.||+||++|++|+|.+||++|.
T Consensus       854 ~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~  933 (3956)
T PRK12467        854 VGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLL  933 (3956)
T ss_pred             ceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHH
Confidence            999999999999999999999887763       4469999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      ++|+|.+++|++.++.. ++.+++++++.......           ......+.+++++++ .++.|++|..++++ ++|
T Consensus       934 ~~p~V~~a~v~~~~~~~-~~~lva~vv~~~~~~~~-----------~~~~~~~~l~~~l~~-~Lp~y~vP~~~~~l-~~l  999 (3956)
T PRK12467        934 AQPGVREAVVLAQPGDA-GLQLVAYLVPAAVADGA-----------EHQATRDELKAQLRQ-VLPDYMVPAHLLLL-DSL  999 (3956)
T ss_pred             hCCCcceEEEEEEcCCC-CcEEEEEEEeccccccc-----------ccccCHHHHHHHHHh-hCchhcCCceEeee-ccc
Confidence            99999999999865543 56688888755321100           123456789999999 79999999998875 789


Q ss_pred             cCCCCCccchHHHHHHHHhhcc
Q 019921          307 PLTSTGKIRRDEVRREVMSHLK  328 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~~~~  328 (334)
                      |+|++||++|++|.+......+
T Consensus      1000 P~t~~GKidR~~L~~~~~~~~~ 1021 (3956)
T PRK12467       1000 PLTPNGKLDRKALPKPDASAVQ 1021 (3956)
T ss_pred             CCCCCCCcCHhhcCCccccccc
Confidence            9999999999999876544433

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-39  Score=312.75  Aligned_cols=284  Identities=30%  Similarity=0.461  Sum_probs=233.2

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEe--ccCCCCHHHHHHHHhh
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILN--GGGGLPSELMKEATNS   80 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~--gG~~l~~~~~~~~~~~   80 (334)
                      +++.|+++++.+++++..++..++++++|.+.++|.++..+.+......  ..++++|.+..  .++++++++.+.+++.
T Consensus       273 ~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  350 (567)
T PRK06178        273 PLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAE--YDLSSLRQVRVVSFVKKLNPDYRQRWRAL  350 (567)
T ss_pred             HHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCC--CCcchheeeeeccccccCCHHHHHHHHHH
Confidence            5778999999999999999999999999999999999988876532222  24567887654  4589999999999999


Q ss_pred             CCCCceE-cccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCc
Q 019921           81 FPKAKLI-SAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSH  153 (334)
Q Consensus        81 ~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~  153 (334)
                      + +..++ +.||+||++..++............                ...++++|.|+|+++++++|++      .|+
T Consensus       351 ~-g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~----------------~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~  413 (567)
T PRK06178        351 T-GSVLAEAAWGMTETHTCDTFTAGFQDDDFDL----------------LSQPVFVGLPVPGTEFKICDFETGELLPLGA  413 (567)
T ss_pred             h-CCcccccccccccccccceeccccccCcccc----------------ccCCcccccccCCcEEEEEcCCCCCcCCCCC
Confidence            8 56655 4799999986544322111000000                0134569999999999999844      577


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcce
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG  233 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  233 (334)
                      .|||+++|++++.||+++++.+...+ .+|||+|||+++++++|+++++||.+|+|+.+|++++|.+||+++.+++.|.+
T Consensus       414 ~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~  492 (567)
T PRK06178        414 EGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLG  492 (567)
T ss_pred             ceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeE
Confidence            89999999999999999998887766 46899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCc
Q 019921          234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGK  313 (334)
Q Consensus       234 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK  313 (334)
                      +++++.+++..++.++++|++++..                ..+.+++++++++ .++.+++|. +.+ ++++|+|++||
T Consensus       493 ~~v~~~~~~~~g~~~~~~v~~~~~~----------------~~~~~~l~~~~~~-~l~~~~~p~-i~~-v~~iP~t~~GK  553 (567)
T PRK06178        493 SAVVGRPDPDKGQVPVAFVQLKPGA----------------DLTAAALQAWCRE-NMAVYKVPE-IRI-VDALPMTATGK  553 (567)
T ss_pred             EEEEcCcCcccCcceEEEEEeCCCC----------------cCCHHHHHHHHHh-cCcccCCce-EEE-eccCCCCCccc
Confidence            9999998887778899999877641                2356789999999 799999996 544 47899999999


Q ss_pred             cchHHHHHHHHh
Q 019921          314 IRRDEVRREVMS  325 (334)
Q Consensus       314 v~r~~l~~~~~~  325 (334)
                      ++|++|++++++
T Consensus       554 v~r~~l~~~~~~  565 (567)
T PRK06178        554 VRKQDLQALAEE  565 (567)
T ss_pred             eeHHHHHHHHHh
Confidence            999999998865

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-39  Score=328.01  Aligned_cols=268  Identities=21%  Similarity=0.323  Sum_probs=213.4

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+++++..+++.|++++||+++++|++++.+++.....  ...+++||.++  |+.+++++++++.+.|+
T Consensus       668 ~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~--~~~~~slr~~~--g~gl~~~l~~~~~~~~~  743 (994)
T PRK07868        668 AVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV--LHGNHPVRLFI--GSGMPTGLWERVVEAFA  743 (994)
T ss_pred             HhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc--cCCCCceEEEe--cCCCCHHHHHHHHHHhC
Confidence            455666677777899999999999999999999999999987653221  22467899876  34599999999999996


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcc-eEEEe-----------eC-
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV-ELKVC-----------SD-  149 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~-~~~i~-----------~~-  149 (334)
                      ++++++.||+||++......  ..                       .+++++|+|+|++ ++++.           ++ 
T Consensus       744 ~~~l~~~YG~TE~~~~~~~~--~~-----------------------~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~  798 (994)
T PRK07868        744 PAHVVEFFATTDGQAVLANV--SG-----------------------AKIGSKGRPLPGAGRVELAAYDPEHDLILEDDR  798 (994)
T ss_pred             chheeeeeeccccccccccc--CC-----------------------CCCcccCCccCCCCceeEEEecCcCCceeecCC
Confidence            68999999999987533211  00                       0334699999997 56653           22 


Q ss_pred             ------CCCceeEEEEcCcchhhhhhhcccCC--CCcc-CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHH
Q 019921          150 ------GSSHVGRILTRGAHVMLRYWDQFLAK--PSVS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE  220 (334)
Q Consensus       150 ------~~g~~Gel~v~g~~~~~gy~~~~~~~--~~~~-~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~  220 (334)
                            +.|+.|||+++++..+     +++.+  ...| .+++||+|||+|++|+||+++|+||.||+||++|++|+|.+
T Consensus       799 G~~~~~~~ge~Gel~~~~~~~~-----~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~E  873 (994)
T PRK07868        799 GFVRRAEVNEVGVLLARARGPI-----DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEP  873 (994)
T ss_pred             ceEEEcCCCCceEEEEecCCCC-----ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHH
Confidence                  1578899999987532     22221  2223 25899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEE
Q 019921          221 VEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV  300 (334)
Q Consensus       221 iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~  300 (334)
                      ||++|.+||.|.+++|++++++. ++.++++|+++++                ...+.++|++++++  ++.|++|+.++
T Consensus       874 IE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~----------------~~~~~~~L~~~l~~--l~~y~vP~~i~  934 (994)
T PRK07868        874 VTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPG----------------AAITAADLTEALAS--LPVGLGPDIVH  934 (994)
T ss_pred             HHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCC----------------CcCCHHHHHHHHHh--CCCCcCCeEEE
Confidence            99999999999999999998876 5778898887764                12456789999986  79999999887


Q ss_pred             eccCCccCCCCCccchHHHHHHHH
Q 019921          301 LWRKPFPLTSTGKIRRDEVRREVM  324 (334)
Q Consensus       301 ~~~~~lP~t~~GKv~r~~l~~~~~  324 (334)
                      ++ ++||+|++||++|++|++...
T Consensus       935 ~v-~~lP~T~sGKi~r~~L~~~~l  957 (994)
T PRK07868        935 VV-PEIPLSATYRPTVSALRAAGI  957 (994)
T ss_pred             Ee-CCCCCCccccEehHHHHhcCC
Confidence            75 789999999999999987643

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=6.7e-40  Score=303.01  Aligned_cols=303  Identities=24%  Similarity=0.312  Sum_probs=239.5

Q ss_pred             eeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhh--------------------------cccc----
Q 019921            4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV--------------------------KKTW----   53 (334)
Q Consensus         4 l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~--------------------------~~~~----   53 (334)
                      +..|+++.+++ .|+..+...|+..+||.+.++|..++.+-.....                          .+..    
T Consensus       324 ~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~  402 (691)
T KOG1256|consen  324 FYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRD  402 (691)
T ss_pred             hhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccc
Confidence            45688888877 5899999999999999999999999776542111                          0000    


Q ss_pred             -------------CCCCCccEEEeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCccc
Q 019921           54 -------------KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG  120 (334)
Q Consensus        54 -------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (334)
                                   ..-.++|.+++|++|+++++...++-.+ ++++.++||+||+++.++.....+.             
T Consensus       403 ~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~d~-------------  468 (691)
T KOG1256|consen  403 RFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPGDN-------------  468 (691)
T ss_pred             hHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCCCC-------------
Confidence                         0114689999999999999999999998 9999999999999965554443322             


Q ss_pred             CCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEc
Q 019921          121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSID  194 (334)
Q Consensus       121 ~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~  194 (334)
                                ..+++|.|+|+++++++|..      .+..|||+|+|+++|+||+++|+.|.++++.|||+||||+|+|+
T Consensus       469 ----------~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~  538 (691)
T KOG1256|consen  469 ----------VLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWD  538 (691)
T ss_pred             ----------CCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeEC
Confidence                      23369999999999997654      44569999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeeccCceee-eCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccc-----
Q 019921          195 DGGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQS-----  268 (334)
Q Consensus       195 ~~G~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----  268 (334)
                      ++|.+.+.||.++++| ..|+.|.|+.||++..+.+-|.+.+|.+-..   ...++++|+++++...+..+....     
T Consensus       539 p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~---~~~LvaiVvpd~e~~~~~a~~~~~~~~~e  615 (691)
T KOG1256|consen  539 PNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSL---RSFLVAIVVPDPEVLKSWAAKDGVKGTFE  615 (691)
T ss_pred             CCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcc---hhcEEEEEecChhhchhhHHHccCchhHH
Confidence            9999999999999999 9999999999999999999999999997433   456889999887644433321111     


Q ss_pred             ---cchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc-----CCCCCccchHHHHHHHHhhcccCCCCC
Q 019921          269 ---SKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSNL  334 (334)
Q Consensus       269 ---~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~l~~~~  334 (334)
                         .....+.....++..+.++..+..+..-+.+.+..++|-     .||+-|+.|..+.++|+++|+++|.++
T Consensus       616 elc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~~~  689 (691)
T KOG1256|consen  616 ELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYKEI  689 (691)
T ss_pred             HHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHHHhhc
Confidence               111112233455555555556777777777776545444     788999999999999999999999864

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-39  Score=309.82  Aligned_cols=276  Identities=19%  Similarity=0.280  Sum_probs=224.2

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.+++..+++.++++++|++..+|+.+..++.......  ....+++.+  +|++++++..+.+.+.+ 
T Consensus       213 ~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~--~~~~~l~~~--~G~~~~~~~~~~~~~~~-  287 (540)
T PRK13388        213 AVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPD--DADNPLRVA--FGNEASPRDIAEFSRRF-  287 (540)
T ss_pred             HHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCcc--ccccceEEE--ECCCCCHHHHHHHHHHh-
Confidence            5678999998888999999999999999999999999988876532211  123456643  36677888999999988 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEE-----------EeeCC-
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELK-----------VCSDG-  150 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~-----------i~~~~-  150 (334)
                      ++++++.||+||++.+++.....                         ..+++|.|++++++.           ++|.+ 
T Consensus       288 ~~~l~~~YG~tE~~~~~~~~~~~-------------------------~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g  342 (540)
T PRK13388        288 GCQVEDGYGSSEGAVIVVREPGT-------------------------PPGSIGRGAPGVAIYNPETLTECAVARFDAHG  342 (540)
T ss_pred             CCceecccccccccceeecCCCC-------------------------CCCCCCCCCCCcEEEcCCCCccccceeccCcc
Confidence            89999999999998655421100                         123589999887653           22222 


Q ss_pred             -----CCceeEEEEc-CcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHH
Q 019921          151 -----SSHVGRILTR-GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV  224 (334)
Q Consensus       151 -----~g~~Gel~v~-g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~  224 (334)
                           .++.|||+++ |+.++.||+++++.+...+ .++||+|||++++++||+++++||.||+|+++|++|+|.+||++
T Consensus       343 ~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~  421 (540)
T PRK13388        343 ALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERI  421 (540)
T ss_pred             ccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHH
Confidence                 2467999998 9999999999998887776 46899999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhc-CCCCcccceEEEecc
Q 019921          225 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK-NLTGFKAPRLFVLWR  303 (334)
Q Consensus       225 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~p~~~~~~~  303 (334)
                      |.++++|.+++|++++++..++.+++++++.++                ...+.++++++++.. .++.+++|..+.++ 
T Consensus       422 l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~~~l~~~~~P~~~~~v-  484 (540)
T PRK13388        422 LLRHPAINRVAVYAVPDERVGDQVMAALVLRDG----------------ATFDPDAFAAFLAAQPDLGTKAWPRYVRIA-  484 (540)
T ss_pred             HHhCCCceEEEEEEccCCCCCceeEEEEEECCC----------------CcCCHHHHHHHHHhhccCCcccCCcEEEEe-
Confidence            999999999999999988778888888887664                124456788888752 49999999998765 


Q ss_pred             CCccCCCCCccchHHHHHHHHhh
Q 019921          304 KPFPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       304 ~~lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      ++||+|++||++|++|+++..+.
T Consensus       485 ~~iP~t~~GKv~R~~L~~~~~~~  507 (540)
T PRK13388        485 ADLPSTATNKVLKRELIAQGWAT  507 (540)
T ss_pred             ccCCCCCcceeeHHhHHHhccCC
Confidence            88999999999999999876544

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.4e-39  Score=303.31  Aligned_cols=261  Identities=30%  Similarity=0.411  Sum_probs=222.3

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.   ..+++.+  .++|.+..+|+++..+......      ..++|.+++||+++++++.+++.+.  
T Consensus       197 ~l~~G~~v~~~~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~------~~~l~~i~~gG~~~~~~~~~~~~~~--  263 (458)
T PRK09029        197 WLYAGATLVVRDK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE------PLSLKAVLLGGAAIPVELTEQAEQQ--  263 (458)
T ss_pred             HHhCCceEEeCCh---HHHHHHH--hhceeeecChHHHHHHHhcccc------CCcceEEEECCCCCCHHHHHHHHHc--
Confidence            4788999988764   5677777  4899999999999888765322      3479999999999999999998864  


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcCc
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGA  162 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g~  162 (334)
                      ++++++.||+||++.........                         ...++|.|++++.+++++      |||+++|+
T Consensus       264 g~~~~~~YG~tE~~~~~~~~~~~-------------------------~~~~~G~~~~~~~~~i~~------gel~v~g~  312 (458)
T PRK09029        264 GIRCWCGYGLTEMASTVCAKRAD-------------------------GLAGVGSPLPGREVKLVD------GEIWLRGA  312 (458)
T ss_pred             CCcEeccccccccCcceeccCCC-------------------------CCCCCCCCCCCCEEEEeC------CEEEEecC
Confidence            89999999999998643322111                         111489999999999976      89999999


Q ss_pred             chhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEecC
Q 019921          163 HVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANA  242 (334)
Q Consensus       163 ~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  242 (334)
                      .++.||+++++.+... ..++||+|||+++++ ||++++.||.||+|+++|++|+|.+||++|.+++.|.+++|++.+++
T Consensus       313 ~~~~gY~~~~~~~~~~-~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~  390 (458)
T PRK09029        313 SLALGYWRQGQLVPLV-NDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADA  390 (458)
T ss_pred             ceeeeeecCccccccc-cCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCc
Confidence            9999999988777644 367999999999999 99999999999999999999999999999999999999999999998


Q ss_pred             cceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHHHHH
Q 019921          243 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE  322 (334)
Q Consensus       243 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~  322 (334)
                      ..++.++++|++...                  ...+++++++++ .++.|++|..+..+ +.+|+|.+||++|+.|+++
T Consensus       391 ~~~~~~~a~v~~~~~------------------~~~~~l~~~~~~-~l~~~~~P~~~~~~-~~~p~t~~gKi~r~~L~~~  450 (458)
T PRK09029        391 EFGQRPVAVVESDSE------------------AAVVNLAEWLQD-KLARFQQPVAYYLL-PPELKNGGIKISRQALKEW  450 (458)
T ss_pred             ccCceEEEEEEcCcc------------------cCHHHHHHHHHh-hchhccCCeEEEEe-cccccCcCCCcCHHHHHHH
Confidence            888889998886632                  456789999999 79999999998875 6799999999999999999


Q ss_pred             HHhhccc
Q 019921          323 VMSHLKS  329 (334)
Q Consensus       323 ~~~~~~~  329 (334)
                      +.++.++
T Consensus       451 ~~~~~~~  457 (458)
T PRK09029        451 VAQQLGN  457 (458)
T ss_pred             HHhccCC
Confidence            9987653

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.7e-39  Score=308.13  Aligned_cols=277  Identities=25%  Similarity=0.372  Sum_probs=232.5

Q ss_pred             eeeccceEEEcCC-CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            3 MLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         3 ~l~~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      ++..|+++++.+. +++..+++.|+++++|.+.++|+++..++.......  ....++|.+++||+++++++++.|.+.|
T Consensus       225 ~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~~~~  302 (508)
T TIGR02262       225 PMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPA--EDQVRLRLCTSAGEALPAEVGQRWQARF  302 (508)
T ss_pred             HHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccc--cccccceeEEEcCCCCCHHHHHHHHHHh
Confidence            4678998888764 789999999999999999999999887765432211  2356899999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeE
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGR  156 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Ge  156 (334)
                       ++++++.||+||++..+........                       ...++|.|++++.++++|++     .|+.||
T Consensus       303 -~~~v~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Ge  358 (508)
T TIGR02262       303 -GVDIVDGIGSTEMLHIFLSNLPGDV-----------------------RYGTSGKPVPGYRLRLVGDGGQDVAAGEPGE  358 (508)
T ss_pred             -CCchhhCccccccCceeecCCccCC-----------------------CCCCcCCCCCCcEEEEECCCCCCCCCCCeeE
Confidence             8999999999999875443221110                       12258999999999999864     577899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+++|+.++.||+++++.+...+ .++||+|||+++++++|.++++||.+|+|+.+|.+++|.+||++|.++++|.++++
T Consensus       359 l~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~  437 (508)
T TIGR02262       359 LLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAV  437 (508)
T ss_pred             EEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEE
Confidence            99999999999999998887776 46899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.++....+.+.+++++.+....             .....+++.+.+++ .++.+++|..+..+ ++||+|++||++|
T Consensus       438 ~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~i~~~~~~-~l~~~~~p~~i~~~-~~iP~t~~gKi~r  502 (508)
T TIGR02262       438 VGVEDEDGLIKPKAFIVLRPGQDI-------------DTALETELKEHVKD-RLAPYKYPRWIVFV-DDLPKTATGKIQR  502 (508)
T ss_pred             EeccccCCCceeEEEEEeCCCCcc-------------ccccHHHHHHHHHH-hcccCCCCceEEEe-cCCCCCCCCcEeh
Confidence            998877777788888887664211             11345788899999 79999999988765 7799999999999


Q ss_pred             HHHHH
Q 019921          317 DEVRR  321 (334)
Q Consensus       317 ~~l~~  321 (334)
                      +.|++
T Consensus       503 ~~l~~  507 (508)
T TIGR02262       503 FKLRE  507 (508)
T ss_pred             hhccC
Confidence            99875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.2e-39  Score=304.81  Aligned_cols=292  Identities=28%  Similarity=0.388  Sum_probs=227.0

Q ss_pred             ccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhc----c------------------------------
Q 019921            6 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVK----K------------------------------   51 (334)
Q Consensus         6 ~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~----~------------------------------   51 (334)
                      .++.++..-..++..++..+++.+||.++++|.+|+.+.+....+    .                              
T Consensus       256 ~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~  335 (613)
T COG1022         256 LYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSW  335 (613)
T ss_pred             hhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcch
Confidence            344444445568999999999999999999999997765421110    0                              


Q ss_pred             -----------cc-CCCCCccEEEeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcc
Q 019921           52 -----------TW-KGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF  119 (334)
Q Consensus        52 -----------~~-~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~  119 (334)
                                 .. ..-.++|++++||+++++++...++..  +++++++||+||+++.++..+..+.            
T Consensus       336 ~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~~~~------------  401 (613)
T COG1022         336 LLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPPDRF------------  401 (613)
T ss_pred             hhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEccccCc------------
Confidence                       00 011479999999999999999999987  8999999999999998887766543            


Q ss_pred             cCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcE
Q 019921          120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNV  199 (334)
Q Consensus       120 ~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l  199 (334)
                                 ..+++|.|+|+++++|+|+     |||+|+|+++|+|||++|+.|..+|+.||||+|||+|.+|++|+|
T Consensus       402 -----------~~gtvG~p~p~~evKI~d~-----GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L  465 (613)
T COG1022         402 -----------VLGTVGKPLPGIEVKIADD-----GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYL  465 (613)
T ss_pred             -----------ccCCcCCcCCCceEEEccC-----ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcE
Confidence                       4557999999999999997     999999999999999999999999999999999999999999999


Q ss_pred             EEeeccCceee-eCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCcccccccccc---ccchhhhh
Q 019921          200 WLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQ---SSKNKELL  275 (334)
Q Consensus       200 ~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~  275 (334)
                      .+.||.+|+|+ .+|++|.|..||+.+.++|-|.+++|++ .+   ...+.|+|++..+..........   ....++..
T Consensus       466 ~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~---k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~  541 (613)
T COG1022         466 VITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DD---KKFLVALIVPDFDALEKWAESLNKVISASREELA  541 (613)
T ss_pred             EEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cC---CcceEEEEeCCHHHHHHHHHhccccccCCHHHHh
Confidence            99999999999 9999999999999999999999999999 22   34688888888764331111111   01111111


Q ss_pred             ccH-------HHHHHHHHhcCCCCcccceEEEeccCCcc-----CCCCCccchHHHHHHHHhhcccCCCC
Q 019921          276 LSS-------EVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       276 ~~~-------~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~l~~~  333 (334)
                      ...       ..+.....  ....+.....+.+..+++.     .|++-|+.|..+.+.+.+.++.+|..
T Consensus       542 ~~~~l~~~~~~~i~~~~~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~  609 (613)
T COG1022         542 RDPKLLKLILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSR  609 (613)
T ss_pred             hCHHHHHHHHHHHHHHhh--cccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhc
Confidence            111       11222222  2344455555665555555     88999999999999999999999863

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.5e-39  Score=301.27  Aligned_cols=265  Identities=34%  Similarity=0.522  Sum_probs=222.7

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+  ..+++.++++++|++.++|+++..+++....      .+++|.+++||+++++++.+++.+. 
T Consensus       172 ~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~------~~~l~~~~~~G~~~~~~~~~~~~~~-  242 (436)
T TIGR01923       172 RWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLDEGGH------NENLRKILLGGSAIPAPLIEEAQQY-  242 (436)
T ss_pred             HHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC------CCceEEEEECCCCCCHHHHHHHHHh-
Confidence            357789999998765  3999999999999999999999888765321      2679999999999999999998764 


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcC
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG  161 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g  161 (334)
                       ++++++.||+||++..++.........                     .+ ++|.|++++++++..++.++.|||+++|
T Consensus       243 -~~~~~~~YG~tE~~~~~~~~~~~~~~~---------------------~~-~~G~~~~~~~~~i~~~~~~~~Gel~v~~  299 (436)
T TIGR01923       243 -GLPIYLSYGMTETCSQVTTATPEMLHA---------------------RP-DVGRPLAGREIKIKVDNKEGHGEIMVKG  299 (436)
T ss_pred             -CCceeeEecCCccchhccCcCcccccc---------------------cc-CCCccCCCcEEEEEeCCCCCceEEEEEC
Confidence             899999999999987554332211100                     11 3899999999998544456889999999


Q ss_pred             cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEec
Q 019921          162 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN  241 (334)
Q Consensus       162 ~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  241 (334)
                      +.++.||++++..+...+ .++||+|||++++++||++++.||.+|++|++|+++++.+||++|.+++.|.++++++.++
T Consensus       300 ~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  378 (436)
T TIGR01923       300 ANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPD  378 (436)
T ss_pred             CccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcc
Confidence            999999999877766554 5789999999999999999999999999999999999999999999999999999999887


Q ss_pred             CcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHH
Q 019921          242 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV  319 (334)
Q Consensus       242 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l  319 (334)
                      ...++.+.+++.+..+                  .+.+.+.+++++ .++.+++|..+.++ ++||+|++||++|++|
T Consensus       379 ~~~~~~~~~~v~~~~~------------------~~~~~l~~~l~~-~l~~~~~p~~i~~~-~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       379 AEWGQVPVAYIVSESD------------------ISQAKLIAYLTE-KLAKYKVPIAFEKL-DELPYNASGKILRNQL  436 (436)
T ss_pred             hhcCCeeEEEEEECCC------------------CCHHHHHHHHHH-hhhCCCCCeEEEEe-cCCCCCCCCceecccC
Confidence            7667778888876653                  345788889988 79999999988875 7799999999999864

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.3e-39  Score=313.66  Aligned_cols=304  Identities=16%  Similarity=0.244  Sum_probs=218.2

Q ss_pred             eeccceEEEcCC--C--CHHHHHHHHH--hhcceEEEechHHHHHHHHHHhh--ccccCCCCCccEEEeccCCCCHHHHH
Q 019921            4 LMVGACHVFIPK--F--ESKSALEAVE--QHCVTSLITVPAIMADLATLIRV--KKTWKGRDSVKKILNGGGGLPSELMK   75 (334)
Q Consensus         4 l~~G~~~v~~~~--~--~~~~~~~~l~--~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~~~~lr~i~~gG~~l~~~~~~   75 (334)
                      ++.|++++++..  +  ++..+++.++  +++++.++.+|+++..++.....  ......++++| +++||+++++++.+
T Consensus       257 ~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~  335 (612)
T PRK12476        257 AVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVT  335 (612)
T ss_pred             HhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHH
Confidence            345666665542  3  8899999995  58999999999998887764211  11112478899 99999999999999


Q ss_pred             HHHhhCC-----CCceEcccccccccccccccccCCCCCC-CCCCCCCcccC---CCCCCCCCCCceeeccccCcceEEE
Q 019921           76 EATNSFP-----KAKLISAYGMTETSSSLTFMTLYDPTLE-TPGQLPQAFGN---VTPNSVHQPQGVCVGKPAPHVELKV  146 (334)
Q Consensus        76 ~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~g~p~~~~~~~i  146 (334)
                      ++.+.|+     ...+++.||+||++..++.......... .........+.   ..+........+++|+|+|+++++|
T Consensus       336 ~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~i  415 (612)
T PRK12476        336 TFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVI  415 (612)
T ss_pred             HHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEE
Confidence            9998772     3459999999998765433221100000 00000000000   0000000012357899999999999


Q ss_pred             eeCC------CCceeEEEEcCcchhhhhhhcccCCCCccC------------------CCceEeccceEEEcCCCcEEEe
Q 019921          147 CSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVST------------------GEVWLDTGDIGSIDDGGNVWLV  202 (334)
Q Consensus       147 ~~~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~------------------~~~~~~TGDl~~~~~~G~l~~~  202 (334)
                      +|++      .|+.|||+++|++++.||+++++.+...|.                  +++||+|||+|+++ ||+++|+
T Consensus       416 vd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~  494 (612)
T PRK12476        416 VDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYIT  494 (612)
T ss_pred             EeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEE
Confidence            9865      577899999999999999999988876653                  24699999999985 9999999


Q ss_pred             eccCceeeeCceeeChHHHHHHHhc-CCCcce--EEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHH
Q 019921          203 GRRNGRIKSGGENVYPEEVEAVLLQ-HPGIIG--IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSE  279 (334)
Q Consensus       203 GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (334)
                      ||.||+||++|++|+|.+||++|.+ ||.|.+  +++++++++. ++.+++++++.+..               ...+.+
T Consensus       495 GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~---------------~~~~~~  558 (612)
T PRK12476        495 GRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGT---------------SRADPA  558 (612)
T ss_pred             eccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCc---------------ccccHH
Confidence            9999999999999999999999985 799999  7778888776 77888888876541               012345


Q ss_pred             HHHHHHHhcCCC-Cccc-ceEEEecc-CCccCCCCCccchHHHHHHHHhh
Q 019921          280 VLRQHCREKNLT-GFKA-PRLFVLWR-KPFPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       280 ~l~~~~~~~~l~-~~~~-p~~~~~~~-~~lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      +|.+++++ .+. .+++ |+.+.++. ++||+|++|||+|++|++++.+.
T Consensus       559 ~l~~~~~~-~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~  607 (612)
T PRK12476        559 PAIDAIRA-AVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDG  607 (612)
T ss_pred             HHHHHHHH-HHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHcC
Confidence            56666666 344 4676 56666553 36999999999999999987543

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5.9e-39  Score=360.31  Aligned_cols=278  Identities=23%  Similarity=0.316  Sum_probs=235.7

Q ss_pred             CceeeccceEEEcC---CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            1 MAMLMVGACHVFIP---KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         1 l~~l~~G~~~v~~~---~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      |.+|++|+|+++.+   ..++..+++.++++++|++.++|++++.+......    ..+++||.+++|||++++++.++|
T Consensus      1333 ~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----~~~~~lr~~~~gGe~l~~~~~~~~ 1408 (4334)
T PRK05691       1333 FWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA----AACTSLRRLFSGGEALPAELRNRV 1408 (4334)
T ss_pred             HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc----ccCCcccEEEEeecCCCHHHHHHH
Confidence            35788999999985   37899999999999999999999999988754321    247889999999999999999999


Q ss_pred             HhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CC
Q 019921           78 TNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SS  152 (334)
Q Consensus        78 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g  152 (334)
                      .+.++++++++.||+||++..++.........                     ...++|+|++++.++|+|++     .|
T Consensus      1409 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~---------------------~~~~iG~p~~~~~~~i~d~~~~~vp~G 1467 (4334)
T PRK05691       1409 LQRLPQVQLHNRYGPTETAINVTHWQCQAEDG---------------------ERSPIGRPLGNVLCRVLDAELNLLPPG 1467 (4334)
T ss_pred             HHhCCCcEEEeCCCcChheeeeeeeecccccC---------------------CCCcccceeCCCEEEEECCCCCCCCCC
Confidence            99998899999999999987655432211110                     22359999999999999876     58


Q ss_pred             ceeEEEEcCcchhhhhhhcccCCCCccC-------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          153 HVGRILTRGAHVMLRYWDQFLAKPSVST-------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       153 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~-------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                      +.|||+|+|+++++||+++++.+...|.       +.+||+|||++++++||+++|+||.||+||++|++|.|.+||++|
T Consensus      1468 ~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l 1547 (4334)
T PRK05691       1468 VAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARL 1547 (4334)
T ss_pred             CceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHH
Confidence            8999999999999999999999887763       346999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCC
Q 019921          226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP  305 (334)
Q Consensus       226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~  305 (334)
                      .++|+|.+++|++..+.. ++.++++++....                .....+++++++++ .++.|++|..++.+ ++
T Consensus      1548 ~~~~~V~~a~v~~~~~~~-~~~lva~~~~~~~----------------~~~~~~~l~~~l~~-~Lp~y~vP~~~~~~-~~ 1608 (4334)
T PRK05691       1548 LAQPGVAQAAVLVREGAA-GAQLVGYYTGEAG----------------QEAEAERLKAALAA-ELPEYMVPAQLIRL-DQ 1608 (4334)
T ss_pred             HhCCCcceEEEEEeeCCC-CCEEEEEEEeCCC----------------CCCCHHHHHHHHHH-hCccccCCcEEEEc-cc
Confidence            999999999999765544 4678888876553                12345689999999 79999999998875 78


Q ss_pred             ccCCCCCccchHHHHHH
Q 019921          306 FPLTSTGKIRRDEVRRE  322 (334)
Q Consensus       306 lP~t~~GKv~r~~l~~~  322 (334)
                      ||+|++||++|++|.+.
T Consensus      1609 lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1609 MPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             cCCCCCCCcChhhcCcc
Confidence            99999999999999754

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-39  Score=314.87  Aligned_cols=299  Identities=19%  Similarity=0.163  Sum_probs=220.6

Q ss_pred             eeeccceEEEcCC-CCH---HHHHHHHHhhcceEEEechHHHHHHHHHHhhccc--cCCCCCccEEEeccCCCCHHHHHH
Q 019921            3 MLMVGACHVFIPK-FES---KSALEAVEQHCVTSLITVPAIMADLATLIRVKKT--WKGRDSVKKILNGGGGLPSELMKE   76 (334)
Q Consensus         3 ~l~~G~~~v~~~~-~~~---~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~~~~lr~i~~gG~~l~~~~~~~   76 (334)
                      +++.|+++++.+. +++   ..+++.++++++|+++++|+++..|.+.......  ...+++||.+++||+++++++.++
T Consensus       286 ~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~  365 (624)
T PRK12582        286 LLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYER  365 (624)
T ss_pred             HHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHH
Confidence            5678999998763 444   4567788999999999999999988765432211  113678999999999999999999


Q ss_pred             HHhh----CC-CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCC
Q 019921           77 ATNS----FP-KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS  151 (334)
Q Consensus        77 ~~~~----~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~  151 (334)
                      +.+.    ++ ++++++.||+||++..++......                       ...+++|.|+|++++++++  .
T Consensus       366 ~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~-----------------------~~~~svG~p~pg~~v~i~~--~  420 (624)
T PRK12582        366 MQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDT-----------------------ERVGLIGLPLPGVELKLAP--V  420 (624)
T ss_pred             HHHHHHhhcCCCceEEeccccccccceeecccCCC-----------------------CCCCCCCcCCCCcEEEEcc--C
Confidence            9885    31 368999999999986544211110                       0234699999999999975  5


Q ss_pred             CceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEE-c---CCCcEEEeeccCceee-eCceeeChHHHH--HH
Q 019921          152 SHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSI-D---DGGNVWLVGRRNGRIK-SGGENVYPEEVE--AV  224 (334)
Q Consensus       152 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~-~---~~G~l~~~GR~~d~i~-~~G~~v~~~~iE--~~  224 (334)
                      |+.|||+++|++++.||+++++.+...|+.+|||+|||+|++ |   ++|+++|+||.||+|+ .+|++|+|.+||  .+
T Consensus       421 G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~  500 (624)
T PRK12582        421 GDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAV  500 (624)
T ss_pred             CCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHH
Confidence            778999999999999999999999988888999999999998 4   4699999999999999 689999999885  68


Q ss_pred             HhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhc------CCCCcc-cce
Q 019921          225 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK------NLTGFK-APR  297 (334)
Q Consensus       225 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~l~~~~-~p~  297 (334)
                      +.+||.|.+++|++.+++.    ..++|++.......-.......  .......+++.+++++.      .++.+. .|+
T Consensus       501 l~~~p~V~~a~VvG~~~~~----~g~lv~p~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~  574 (624)
T PRK12582        501 AACSPVIHDAVVAGQDRAF----IGLLAWPNPAACRQLAGDPDAA--PEDVVKHPAVLAILREGLSAHNAEAGGSSSRIA  574 (624)
T ss_pred             HhcCcchheEEEEcCCCCc----EEEEEecCHHHHHHHHhcCCCC--HHHHhcCHHHHHHHHHHHHHHHhhcCCChhheE
Confidence            8899999999999987654    4455554332100000000000  00001112233333220      255565 898


Q ss_pred             EEEeccCCcc------CCCCCccchHHHHHHHHhhcccCCCC
Q 019921          298 LFVLWRKPFP------LTSTGKIRRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       298 ~~~~~~~~lP------~t~~GKv~r~~l~~~~~~~~~~l~~~  333 (334)
                      .+.++ +.+|      +|++||+.|+.+.+.|.++|+++|.+
T Consensus       575 ~~~~~-~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~  615 (624)
T PRK12582        575 RALLM-TEPPSIDAGEITDKGYINQRAVLERRAALVERLYAE  615 (624)
T ss_pred             EEEEe-CCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcC
Confidence            88876 4455      77899999999999999999999975

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-38  Score=299.74  Aligned_cols=279  Identities=26%  Similarity=0.389  Sum_probs=229.0

Q ss_pred             ceeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHH-HHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMAD-LATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~-l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .+++.|+++++.+  .+++..+++.++++++|.+.++|+.+.. +..... ......++++|.+++||+++++++.+++.
T Consensus       239 ~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~i~~gG~~~~~~~~~~~~  317 (533)
T PRK07798        239 AALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-ARGPYDLSSLFAIASGGALFSPSVKEALL  317 (533)
T ss_pred             HHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-ccccCCCCceEEEEECCCCCCHHHHHHHH
Confidence            4678899999998  7899999999999999999999876643 444333 11123467999999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeec--cccCcceEEEeeCC-----C
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVG--KPAPHVELKVCSDG-----S  151 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~p~~~~~~~i~~~~-----~  151 (334)
                      +.++++.+++.||+||++...........                         ...|  .+.++..+++++++     .
T Consensus       318 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~-------------------------~~~g~~~~~~~~~~~i~~~~~~~~~~  372 (533)
T PRK07798        318 ELLPNVVLTDSIGSSETGFGGSGTVAKGA-------------------------VHTGGPRFTIGPRTVVLDEDGNPVEP  372 (533)
T ss_pred             HHcCCCeEEeeecccccccccccCCCCCC-------------------------ccCCCCccCCCceEEEECCCCCCCCC
Confidence            99988999999999999754433211100                         0133  56788889988776     3


Q ss_pred             Cce--eEEEEcCcchhhhhhhcccCCCCccC---CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          152 SHV--GRILTRGAHVMLRYWDQFLAKPSVST---GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       152 g~~--Gel~v~g~~~~~gy~~~~~~~~~~~~---~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      |+.  |+++ +++.++.||+++++.+...|.   +.+||+|||+++++++|+++++||.||+++.+|++|+|.+||+++.
T Consensus       373 g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~  451 (533)
T PRK07798        373 GSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALK  451 (533)
T ss_pred             CCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHH
Confidence            444  6565 566899999999988776653   4579999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      +++.|.+++|++.+++..++.+.+++++.+.                ...+.+++.+++++ .++.+.+|..++++ ++|
T Consensus       452 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~~-~~i  513 (533)
T PRK07798        452 AHPDVADALVVGVPDERWGQEVVAVVQLREG----------------ARPDLAELRAHCRS-SLAGYKVPRAIWFV-DEV  513 (533)
T ss_pred             hCccceeEEEEeccCcccCceEEEEEEECCC----------------CCCCHHHHHHHHhh-hcccCCCCeEEEEc-ccC
Confidence            9999999999999888778888888887754                12456889999999 79999999988775 789


Q ss_pred             cCCCCCccchHHHHHHHHh
Q 019921          307 PLTSTGKIRRDEVRREVMS  325 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~  325 (334)
                      |+|++||++|+.|+++.++
T Consensus       514 P~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        514 QRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             CCCCcchhhHHHHhhhhcc
Confidence            9999999999999999875

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=8.4e-38  Score=300.30  Aligned_cols=290  Identities=24%  Similarity=0.372  Sum_probs=227.4

Q ss_pred             cceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCCCce
Q 019921            7 GACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKL   86 (334)
Q Consensus         7 G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~   86 (334)
                      +++.+++..+++..+++.++++++|++.++|+++..+.+....... ..++++|.++++|+++++++++++.+.  +.++
T Consensus       261 ~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-~~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~  337 (567)
T PLN02479        261 CGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETI-LPLPRVVHVMTAGAAPPPSVLFAMSEK--GFRV  337 (567)
T ss_pred             cCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccc-ccccceeEEEEcCCCCCHHHHHHHHhc--CCce
Confidence            3344555678999999999999999999999999988776432221 136789999999999999999999875  7899


Q ss_pred             EcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcce-EEEeeCC-------C-CceeEE
Q 019921           87 ISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVE-LKVCSDG-------S-SHVGRI  157 (334)
Q Consensus        87 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~-~~i~~~~-------~-g~~Gel  157 (334)
                      ++.||+||+++.++..........    ..       +.. ......+.|.+.++.. +++++++       . ++.|||
T Consensus       338 ~~~yG~tE~~~~~~~~~~~~~~~~----~~-------~~~-~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl  405 (567)
T PLN02479        338 THTYGLSETYGPSTVCAWKPEWDS----LP-------PEE-QARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEI  405 (567)
T ss_pred             ecccccccccccccceeccccccc----cC-------ccc-ccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEE
Confidence            999999999754443221110000    00       000 0001124677777765 6777632       1 257999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|++++.||+++++.+...+ .++||+|||+++++++|+++++||.||+|+.+|++|+|.+||++|..+|.|.+++|+
T Consensus       406 ~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~  484 (567)
T PLN02479        406 VMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVV  484 (567)
T ss_pred             EEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEE
Confidence            9999999999999999998887 578999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +.++...++.+++++++..+....+           .....++|.+++++ .++.+++|+.+.+  ++||+|++||++|+
T Consensus       485 ~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~l~~~~~~-~l~~~~~P~~~~~--~~iP~t~~gKv~r~  550 (567)
T PLN02479        485 ARPDERWGESPCAFVTLKPGVDKSD-----------EAALAEDIMKFCRE-RLPAYWVPKSVVF--GPLPKTATGKIQKH  550 (567)
T ss_pred             eccchhcCceeEEEEEecCcccccc-----------hhhhHHHHHHHHHh-hcccccCCceEEe--ccCCCCCccCeeHH
Confidence            9988877788999998876521110           12345678999998 7999999998765  56999999999999


Q ss_pred             HHHHHHHhh
Q 019921          318 EVRREVMSH  326 (334)
Q Consensus       318 ~l~~~~~~~  326 (334)
                      .|++.+..+
T Consensus       551 ~L~~~~~~~  559 (567)
T PLN02479        551 VLRAKAKEM  559 (567)
T ss_pred             HHHHHHHhh
Confidence            999887653

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2e-38  Score=356.00  Aligned_cols=290  Identities=21%  Similarity=0.273  Sum_probs=236.8

Q ss_pred             ceeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            2 AMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         2 ~~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      .+|+.|+++++.+  .+++..+++.++++++|++.++|+++..|.+......   ...++|.+++|||++++++.+++.+
T Consensus      2394 ~~L~~G~~lvl~~~~~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~~~---~~~~lr~i~~gGe~l~~~~~~~~~~ 2470 (4334)
T PRK05691       2394 VPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAGQG---EQLPVRMCITGGEALTGEHLQRIRQ 2470 (4334)
T ss_pred             HHHhCCCEEEECCcccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhccc---cCCCceEEEEccccCCHHHHHHHHH
Confidence            5688999999876  3689999999999999999999999999887653322   3567999999999999999999999


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                      .+++..+++.||+||++.+.+.+........                  .....++|+|++++.++|+|++     .|+.
T Consensus      2471 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~iG~pi~~~~~~i~d~~~~~vp~G~~ 2532 (4334)
T PRK05691       2471 AFAPQLFFNAYGPTETVVMPLACLAPEQLEE------------------GAASVPIGRVVGARVAYILDADLALVPQGAT 2532 (4334)
T ss_pred             hCCCceEEeCcCCCcceEEEEEeeccccccc------------------CCCCCccccccCCCEEEEECCCCCCCCCCCc
Confidence            9877889999999999865433322111000                  0022358999999999999876     5889


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccC-------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhc
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVST-------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ  227 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~-------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~  227 (334)
                      |||+|+|+++++||+++++.+...|.       +++||+|||++++++||+++|+||.||+||++|++|.|.+||++|.+
T Consensus      2533 GEL~i~G~~v~~GY~~~~~~t~~~F~~~p~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l~~ 2612 (4334)
T PRK05691       2533 GELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLE 2612 (4334)
T ss_pred             eEEEecccccCccccCChhhhhhhccCCCCCCCCCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHHHh
Confidence            99999999999999999998887763       34699999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc
Q 019921          228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP  307 (334)
Q Consensus       228 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP  307 (334)
                      +|+|.+++|++..+. .++.++++++........          +......+.+++++++ .++.|++|..++++ ++||
T Consensus      2613 ~p~V~~a~V~~~~~~-~~~~lva~vv~~~~~~~~----------~~~~~~~~~l~~~l~~-~Lp~ymvP~~~~~v-~~lP 2679 (4334)
T PRK05691       2613 HPAVREAVVLALDTP-SGKQLAGYLVSAVAGQDD----------EAQAALREALKAHLKQ-QLPDYMVPAHLILL-DSLP 2679 (4334)
T ss_pred             CCCcceEEEEEeeCC-CCcEEEEEEEeccccccc----------ccccccHHHHHHHHHh-hCccccCChhheee-cccC
Confidence            999999999988544 456788888764321100          0112345789999999 79999999998875 7899


Q ss_pred             CCCCCccchHHHHHHHHh
Q 019921          308 LTSTGKIRRDEVRREVMS  325 (334)
Q Consensus       308 ~t~~GKv~r~~l~~~~~~  325 (334)
                      +|++||++|++|.+....
T Consensus      2680 ~t~~GKidr~~L~~~~~~ 2697 (4334)
T PRK05691       2680 LTANGKLDRRALPAPDPE 2697 (4334)
T ss_pred             CCCCCcccHHhhcCcccc
Confidence            999999999999865433

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-38  Score=305.11  Aligned_cols=295  Identities=21%  Similarity=0.258  Sum_probs=212.3

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++.+.+++..+++.++++++|++.++|++++.++.......  ....++|.+  +|+++++++++++.+.|+
T Consensus       262 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~--~~~~~l~~~--~g~~l~~~~~~~~~~~~~  337 (600)
T PRK08279        262 VLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT--DRDHRLRLM--IGNGLRPDIWDEFQQRFG  337 (600)
T ss_pred             HHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc--ccCcceeEE--ecCCCCHHHHHHHHHHhC
Confidence            4668898999888999999999999999999999999988876532221  134567654  478899999999999995


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEE--Ec
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRIL--TR  160 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~--v~  160 (334)
                      ...+++.||+||++..++... ...  .+.+......   .............|.|+.+..........|+.||++  ++
T Consensus       338 ~~~l~~~YG~tE~~~~~~~~~-~~~--~~~g~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~  411 (600)
T PRK08279        338 IPRILEFYAASEGNVGFINVF-NFD--GTVGRVPLWL---AHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRIT  411 (600)
T ss_pred             cceeeeeecccccceeecccC-CCC--cccccccccc---cccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEec
Confidence            557999999999885332211 000  0000000000   000000000000122221111111112257789998  78


Q ss_pred             CcchhhhhhhcccCCCCcc------CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceE
Q 019921          161 GAHVMLRYWDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI  234 (334)
Q Consensus       161 g~~~~~gy~~~~~~~~~~~------~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  234 (334)
                      +++++.|| +++..+...+      .+++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.++
T Consensus       412 ~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a  490 (600)
T PRK08279        412 DRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEA  490 (600)
T ss_pred             Cccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceE
Confidence            99999999 7777665433      2468999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCc-ceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCc
Q 019921          235 VVVGIANAR-LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGK  313 (334)
Q Consensus       235 ~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK  313 (334)
                      +|++++++. .+...++++++..+                .....+++.+++++ .++.|++|+.++++ ++||+|++||
T Consensus       491 ~v~gv~~~~~~~~~~~~~vv~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GK  552 (600)
T PRK08279        491 VVYGVEVPGTDGRAGMAAIVLADG----------------AEFDLAALAAHLYE-RLPAYAVPLFVRLV-PELETTGTFK  552 (600)
T ss_pred             EEEEeecCCCCCccceeEEEecCC----------------ccCCHHHHHHHHHh-hCccccCCeEEEee-cCCCCCcchh
Confidence            999998654 23344555554432                12456889999999 79999999998875 7799999999


Q ss_pred             cchHHHHHHHHhh
Q 019921          314 IRRDEVRREVMSH  326 (334)
Q Consensus       314 v~r~~l~~~~~~~  326 (334)
                      ++|++|++++.++
T Consensus       553 i~r~~L~~~~~~~  565 (600)
T PRK08279        553 YRKVDLRKEGFDP  565 (600)
T ss_pred             hhHHHHhhcCCCc
Confidence            9999999987766

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-37  Score=284.51  Aligned_cols=246  Identities=26%  Similarity=0.366  Sum_probs=209.2

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+..++..+++.++++++|.++++|+++..+.+....      ..+++.++++|+++++++++.+++. 
T Consensus       163 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~------~~~l~~~~~~G~~l~~~~~~~~~~~-  235 (414)
T PRK08308        163 AALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG------TFQFHAVMTSGTPLPEAWFYKLRER-  235 (414)
T ss_pred             HHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc------cccccEEEEccCCCCHHHHHHHHHh-
Confidence            457789999999889999999999999999999999999988765321      2368899999999999999999887 


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcC
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG  161 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g  161 (334)
                       ..++++.||+||++.+.....  ..                       ...++|+|+|++++++.++ .++.||+++++
T Consensus       236 -~~~~~~~YG~tE~~~~~~~~~--~~-----------------------~~~~~G~p~~~~~~~~~~~-~~~~gel~v~~  288 (414)
T PRK08308        236 -TTYMMQQYGCSEAGCVSICPD--MK-----------------------SHLDLGNPLPHVSVSAGSD-ENAPEEIVVKM  288 (414)
T ss_pred             -CChhhhccCccccCCeeecCC--CC-----------------------CCCccCccCCCeEEEEecC-CCCCceEEEEc
Confidence             578999999999985332111  00                       2235899999999998654 56779999975


Q ss_pred             cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEec
Q 019921          162 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN  241 (334)
Q Consensus       162 ~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  241 (334)
                                         .++||+|||++++++||+++++||.||+||.+|++|+|.+||+++.++++|.+++|++.++
T Consensus       289 -------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~  349 (414)
T PRK08308        289 -------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKD  349 (414)
T ss_pred             -------------------CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence                               3579999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHHH
Q 019921          242 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR  320 (334)
Q Consensus       242 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~  320 (334)
                      +..++.+.++++....                  .+.+++++++++ .++.+++|..+.++ ++||+|++||++|+.|+
T Consensus       350 ~~~~~~~~~~v~~~~~------------------~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~iP~t~~GKi~r~~~~  408 (414)
T PRK08308        350 PVAGERVKAKVISHEE------------------IDPVQLREWCIQ-HLAPYQVPHEIESV-TEIPKNANGKVSRKLLE  408 (414)
T ss_pred             CCCCceEEEEEEeCCC------------------CCHHHHHHHHHH-hCccccCCcEEEEe-ccCCCCCCcCeehhhhh
Confidence            8888888888875543                  456788899999 79999999998775 78999999999999543

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-37  Score=292.32  Aligned_cols=286  Identities=27%  Similarity=0.413  Sum_probs=224.8

Q ss_pred             eccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCCC
Q 019921            5 MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKA   84 (334)
Q Consensus         5 ~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~   84 (334)
                      +.|++.++...+++..+++.|+++++|++.++|+++..|++.......  .+.+++.++++|+++++++.+.+++ + ++
T Consensus       246 ~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~-~-~~  321 (545)
T PRK08162        246 ARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA--GIDHPVHAMVAGAAPPAAVIAKMEE-I-GF  321 (545)
T ss_pred             HHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccccc--CCccceEEEECCCCCCHHHHHHHHH-h-CC
Confidence            456666666778999999999999999999999999998875433221  2445677889999999999999877 4 89


Q ss_pred             ceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccC-cceEEEeeCC-------CC-cee
Q 019921           85 KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAP-HVELKVCSDG-------SS-HVG  155 (334)
Q Consensus        85 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~-~~~~~i~~~~-------~g-~~G  155 (334)
                      ++++.||+||+++.++.+...... ..   ..       .. .......+.|.+.+ +..++++|++       .| +.|
T Consensus       322 ~~~~~YG~tE~~~~~~~~~~~~~~-~~---~~-------~~-~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~G  389 (545)
T PRK08162        322 DLTHVYGLTETYGPATVCAWQPEW-DA---LP-------LD-ERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIG  389 (545)
T ss_pred             ceeecccccccCcceeeccccccc-cc---CC-------cc-chhhccCCCCcccCCcceEEEEcCCCCcccCCCCCcee
Confidence            999999999997554433211100 00   00       00 00001123555554 3356777753       12 469


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|+.++.||+++++.+...| .++||+|||++++|++|+++++||.||+++.+|++|+|.+||++|.+++.|.+++
T Consensus       390 el~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~  468 (545)
T PRK08162        390 EIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAA  468 (545)
T ss_pred             EEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEE
Confidence            999999999999999999888777 5689999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++.++...++.+++++++.+.                ...+.+++++++++ .++.+.+|..+.+  .+||+|++||++
T Consensus       469 vv~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~P~~~~~--~~iP~t~~gK~~  529 (545)
T PRK08162        469 VVAKPDPKWGEVPCAFVELKDG----------------ASATEEEIIAHCRE-HLAGFKVPKAVVF--GELPKTSTGKIQ  529 (545)
T ss_pred             EEeeeccccCceEEEEEEeCCC----------------CCCCHHHHHHHHHH-hcccccCCcEEEe--cccCCCCCcCCc
Confidence            9999988777889999887764                11346789999999 7999999998864  469999999999


Q ss_pred             hHHHHHHHHhh
Q 019921          316 RDEVRREVMSH  326 (334)
Q Consensus       316 r~~l~~~~~~~  326 (334)
                      |+.|++.+.+.
T Consensus       530 r~~l~~~~~~l  540 (545)
T PRK08162        530 KFVLREQAKSL  540 (545)
T ss_pred             HHHHHHHHhhh
Confidence            99999886554

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-36  Score=293.50  Aligned_cols=305  Identities=21%  Similarity=0.291  Sum_probs=220.8

Q ss_pred             eeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhcc-ccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            3 MLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         3 ~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      ++..|+++++.+.    .++..+++.+.++++++++.+|.++..+........ ...+++++|.+++||+++++++++.+
T Consensus       240 ~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~  319 (579)
T PRK09192        240 PVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQF  319 (579)
T ss_pred             HHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHH
Confidence            4567788776652    368899999999999987776655554443322111 11246799999999999999999999


Q ss_pred             HhhCCC-----CceEcccccccccccccccccCCCCCCCC---CCCCCcccCCCC--CCCCCCCceeeccccCcceEEEe
Q 019921           78 TNSFPK-----AKLISAYGMTETSSSLTFMTLYDPTLETP---GQLPQAFGNVTP--NSVHQPQGVCVGKPAPHVELKVC  147 (334)
Q Consensus        78 ~~~~~~-----~~~~~~yG~tE~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~g~p~~~~~~~i~  147 (334)
                      .+.|+.     ..+++.||+||++..++............   .......-...+  .........++|.|+|+++++++
T Consensus       320 ~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~  399 (579)
T PRK09192        320 AEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIR  399 (579)
T ss_pred             HHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEE
Confidence            987731     35899999999986554322110000000   000000000000  00000113468999999999998


Q ss_pred             eCC-----CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHH
Q 019921          148 SDG-----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE  222 (334)
Q Consensus       148 ~~~-----~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE  222 (334)
                      |++     .++.|||+++|+.++.||+++ ..+...+..++||+|||++++ ++|+++++||.||+|+++|++|+|.+||
T Consensus       400 d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE  477 (579)
T PRK09192        400 NEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIE  477 (579)
T ss_pred             CCCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHH
Confidence            865     467899999999999999999 666666778899999999999 8999999999999999999999999999


Q ss_pred             HHHhcCCCcc--eEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEE
Q 019921          223 AVLLQHPGII--GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV  300 (334)
Q Consensus       223 ~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~  300 (334)
                      ++|.+||+|.  +++|++++++. ++.++++++....                .....++|.+.+++.....+++|..+.
T Consensus       478 ~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~~~~~~i~  540 (579)
T PRK09192        478 WIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRIS----------------DEERRGQLIHALAALVRSEFGVEAAVE  540 (579)
T ss_pred             HHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCC----------------ChHHHHHHHHHHHHHHHHHhCCCceEE
Confidence            9999999998  89999998876 4477777775543                113446677777773223577777666


Q ss_pred             ecc-CCccCCCCCccchHHHHHHHHhh
Q 019921          301 LWR-KPFPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       301 ~~~-~~lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      ++. ++||+|++||++|++|++.+.+-
T Consensus       541 ~~~~~~lP~t~~GKv~R~~l~~~~~~~  567 (579)
T PRK09192        541 LVPPHSLPRTSSGKLSRAKAKKRYLSG  567 (579)
T ss_pred             EeCCCCcCCCCCcchhHHHHHHHHHcC
Confidence            553 47999999999999999987653

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-35  Score=285.87  Aligned_cols=309  Identities=19%  Similarity=0.287  Sum_probs=208.7

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHH-HHHHHhhc-cccCCCCCccEEEeccCCCCHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMAD-LATLIRVK-KTWKGRDSVKKILNGGGGLPSELMK   75 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~-l~~~~~~~-~~~~~~~~lr~i~~gG~~l~~~~~~   75 (334)
                      .+++.|+++++.+.    .++..+++.+++++++.+ .+|+++.. +....... .....++++|.+++||+++++++++
T Consensus       228 ~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~  306 (578)
T PRK05850        228 APILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLK  306 (578)
T ss_pred             HHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHH
Confidence            46788999998874    278999999999999865 55655443 33322111 1112467899999999999999999


Q ss_pred             HHHhhCC-----CCceEcccccccccccccccccCCCCCCCC-CCCCCcccCCCCCCC-CCCCceeeccccCcceEEEee
Q 019921           76 EATNSFP-----KAKLISAYGMTETSSSLTFMTLYDPTLETP-GQLPQAFGNVTPNSV-HQPQGVCVGKPAPHVELKVCS  148 (334)
Q Consensus        76 ~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~p~~~~~~~i~~  148 (334)
                      +|.+.|+     +..+++.||+||++..+............. .......+...+... ......++|.|. +.+++++|
T Consensus       307 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd  385 (578)
T PRK05850        307 RFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD  385 (578)
T ss_pred             HHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc
Confidence            9988772     347899999999875444322111000000 000000000000000 000112345554 57888888


Q ss_pred             CC------CCceeEEEEcCcchhhhhhhcccCCCCccC-----------CCceEeccceEEEcCCCcEEEeeccCceeee
Q 019921          149 DG------SSHVGRILTRGAHVMLRYWDQFLAKPSVST-----------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKS  211 (334)
Q Consensus       149 ~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~  211 (334)
                      ++      .|+.|||+++|++++.||+++++.+...|.           .++||+|||+++++ ||+++++||.+|+|++
T Consensus       386 ~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~  464 (578)
T PRK05850        386 PDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV  464 (578)
T ss_pred             CCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE
Confidence            54      578899999999999999999998887763           25799999999998 8999999999999999


Q ss_pred             CceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCC
Q 019921          212 GGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT  291 (334)
Q Consensus       212 ~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  291 (334)
                      +|++|+|.+||++|.+|+.+ ++++++++++ .++.++++|++++......          +.......+++.+.. .+.
T Consensus       465 ~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~----------~~~~~~~~l~~~v~~-~l~  531 (578)
T PRK05850        465 DGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDE----------EAMDRLRTVKREVTS-AIS  531 (578)
T ss_pred             CCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcch----------hhhhhHHHHHHHHHH-HHH
Confidence            99999999999999999985 5778888876 5778999998876521110          000112334444333 122


Q ss_pred             C--cccceEEEecc-CCccCCCCCccchHHHHHHHHhh
Q 019921          292 G--FKAPRLFVLWR-KPFPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       292 ~--~~~p~~~~~~~-~~lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      .  ...|..+.++. +.||+|++||++|+++++.|.+.
T Consensus       532 ~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~  569 (578)
T PRK05850        532 KSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQD  569 (578)
T ss_pred             HHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence            1  12344444433 47999999999999999998654

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.5e-35  Score=279.15  Aligned_cols=304  Identities=22%  Similarity=0.276  Sum_probs=213.7

Q ss_pred             eeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhcc--ccCCCCCccEEEeccCCCCHHHHHH
Q 019921            3 MLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK--TWKGRDSVKKILNGGGGLPSELMKE   76 (334)
Q Consensus         3 ~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~~~~lr~i~~gG~~l~~~~~~~   76 (334)
                      ++..|+++++++.    .++..+++.+++++++++.++|..+..+.+......  ...+++++|.++++|+++++++.++
T Consensus       216 ~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~  295 (545)
T PRK07768        216 PMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVED  295 (545)
T ss_pred             HHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHH
Confidence            5778888888764    367889999999999999888887776665442221  1235779999999999999999999


Q ss_pred             HHhh---CCCC---ceEcccccccccccccccccCCCCCC---CCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEe
Q 019921           77 ATNS---FPKA---KLISAYGMTETSSSLTFMTLYDPTLE---TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC  147 (334)
Q Consensus        77 ~~~~---~~~~---~~~~~yG~tE~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~  147 (334)
                      +.+.   | +.   .+++.||+||++..++..........   ..............+..+...+.++|.|+++++++++
T Consensus       296 ~~~~~~~~-g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~  374 (545)
T PRK07768        296 LLDAGARF-GLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVV  374 (545)
T ss_pred             HHHHHHhc-CCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEE
Confidence            9874   4 33   59999999999865443322110000   0000000000000001112245679999999999999


Q ss_pred             eCC-----CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHH
Q 019921          148 SDG-----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE  222 (334)
Q Consensus       148 ~~~-----~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE  222 (334)
                      +++     .++.|||+++|+.++.||++.+.... ....++||+|||+++++++|.++++||.||+|+.+|++|+|.+||
T Consensus       375 ~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE  453 (545)
T PRK07768        375 DEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIE  453 (545)
T ss_pred             CCCCCCCCCCCEEEEEEccCcccccccCCCCCcc-cccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHH
Confidence            865     56889999999999999998654443 334678999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEEe--cCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCC-Cc-ccceE
Q 019921          223 AVLLQHPGIIGIVVVGIA--NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLT-GF-KAPRL  298 (334)
Q Consensus       223 ~~l~~~~~v~~~~v~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~~-~~p~~  298 (334)
                      +.|.++|+|.+++|+++.  +...++..+++++.....           .    ......+.+.+++ .+. .+ ..|..
T Consensus       454 ~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~-----------~----~~~~~~l~~~~~~-~l~~~~~~~p~~  517 (545)
T PRK07768        454 RAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFE-----------D----PAEVRRIRHQVAH-EVVAEVGVRPRN  517 (545)
T ss_pred             HHHHhCcccccceEEEEEecCCCCceEEEEEEEecccc-----------c----HHHHHHHHHHHHH-HHHHHhCCCccE
Confidence            999999999998777665  333344455555433320           0    0122344445544 222 22 46766


Q ss_pred             EEecc-CCccCCCCCccchHHHHHHHH
Q 019921          299 FVLWR-KPFPLTSTGKIRRDEVRREVM  324 (334)
Q Consensus       299 ~~~~~-~~lP~t~~GKv~r~~l~~~~~  324 (334)
                      +.++. +.||+|++||++|+.++++|.
T Consensus       518 v~~v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        518 VVVLGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             EEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence            66553 379999999999999998774

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-35  Score=263.19  Aligned_cols=284  Identities=23%  Similarity=0.302  Sum_probs=224.8

Q ss_pred             HHHHhhcceEEEechHHHHHHHHHHhhc-----------------------c-cc----------------CCCCCccEE
Q 019921           23 EAVEQHCVTSLITVPAIMADLATLIRVK-----------------------K-TW----------------KGRDSVKKI   62 (334)
Q Consensus        23 ~~l~~~~vt~~~~~P~~~~~l~~~~~~~-----------------------~-~~----------------~~~~~lr~i   62 (334)
                      ..+...|+|.+.++|..|.++.+-...+                       . +.                -.-..||++
T Consensus       328 GD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~  407 (678)
T KOG1180|consen  328 GDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYI  407 (678)
T ss_pred             CccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEE
Confidence            3456889999999999997765421000                       0 00                012479999


Q ss_pred             EeccCCCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcc
Q 019921           63 LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHV  142 (334)
Q Consensus        63 ~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~  142 (334)
                      ++||+|+++++.+.+.-.| .+++.++||.||+++..+.....+...                       +.+|.|++++
T Consensus       408 LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~d~~~-----------------------g~vG~pl~c~  463 (678)
T KOG1180|consen  408 LSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPEDFST-----------------------GRVGAPLPCC  463 (678)
T ss_pred             EeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChhhccc-----------------------ccccCCccce
Confidence            9999999999999999998 889999999999998777776665432                       2599999999


Q ss_pred             eEEEeeCC--------CCceeEEEEcCcchhhhhhhcccCCCCccCC-Cc--eEeccceEEEcCCCcEEEeeccCceee-
Q 019921          143 ELKVCSDG--------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTG-EV--WLDTGDIGSIDDGGNVWLVGRRNGRIK-  210 (334)
Q Consensus       143 ~~~i~~~~--------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-~~--~~~TGDl~~~~~~G~l~~~GR~~d~i~-  210 (334)
                      +++++|-.        .-..|||+++|+++..||+++++.|...|.. +|  ||+|||+|++++||+|.+.+|.+|++| 
T Consensus       464 eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKl  543 (678)
T KOG1180|consen  464 EIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKL  543 (678)
T ss_pred             EEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhh
Confidence            99999855        1146999999999999999999999999876 77  999999999999999999999999999 


Q ss_pred             eCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccc---------cchhhhhccHHHH
Q 019921          211 SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQS---------SKNKELLLSSEVL  281 (334)
Q Consensus       211 ~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l  281 (334)
                      .+|+.|+++-+|.++..+|.|+..+|.+...   ...++++|++.......-......         .+.+......++|
T Consensus       544 q~GEYIsL~KvEa~l~s~p~V~NICvyAd~~---~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L  620 (678)
T KOG1180|consen  544 QNGEYISLGKVEAALRSSPYVDNICVYADSN---KSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKEL  620 (678)
T ss_pred             cccceeehHHHHHHHhcCcchhheEEecccc---cceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHH
Confidence            9999999999999999999999999998544   346899998886543222221111         1111222334566


Q ss_pred             HHHHHhcCCCCcccceEEEeccCCcc-----CCCCCccchHHHHHHHHhhcccCCCC
Q 019921          282 RQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       282 ~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~l~~~  333 (334)
                      .+..++++|..+.+|..|.++.++.-     .|+.-|+.|+.++..|.++|+++|.+
T Consensus       621 ~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~  677 (678)
T KOG1180|consen  621 IEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE  677 (678)
T ss_pred             HHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            66666678999999999987643322     56677999999999999999999986

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.98  E-value=9e-32  Score=248.22  Aligned_cols=212  Identities=28%  Similarity=0.354  Sum_probs=179.7

Q ss_pred             ceeeccceEEEcCCCC---HHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIPKFE---SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~---~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .++..|+++++++...   +..+.+.++++++|.+.++|++++.+.+...     ..+++||.+++||+++++++++.+.
T Consensus       181 ~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-----~~~~~l~~v~~~g~~~~~~~~~~~~  255 (408)
T TIGR01733       181 GTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP-----PALASLRLVILGGEALTPALVDRWR  255 (408)
T ss_pred             HHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh-----hcccCceEEEEeCccCCHHHHHHHH
Confidence            4577899999887633   6889999999999999999999999988754     2478999999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +.++++.+++.||+||++.+++...........                 . .+.++|.|+++++++|++++     .|+
T Consensus       256 ~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~-----------------~-~~~~~G~~~~~~~~~i~~~~~~~~~~g~  317 (408)
T TIGR01733       256 ARGPGARLINLYGPTETTVWSTATLVDADDAPR-----------------E-SPVPIGRPLANTRLYVLDDDLRPVPVGV  317 (408)
T ss_pred             HhCCCcEEEecccCCceEEEEEEEEcCccccCC-----------------c-cccccCcccCCceEEEECCCCCCCCCCC
Confidence            999559999999999999766533332221100                 0 13469999999999999876     577


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccCCC------c--eEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVSTGE------V--WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~------~--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                      .|||+++|++++.||+++++.+...+...      +  ||+|||+++++++|++++.||.+|+++.+|++++|.+||+++
T Consensus       318 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l  397 (408)
T TIGR01733       318 VGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAAL  397 (408)
T ss_pred             ceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHH
Confidence            89999999999999999988877665322      2  999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEE
Q 019921          226 LQHPGIIGIVV  236 (334)
Q Consensus       226 ~~~~~v~~~~v  236 (334)
                      ..++.|.+++|
T Consensus       398 ~~~~~v~~~~v  408 (408)
T TIGR01733       398 LRHPGVREAVV  408 (408)
T ss_pred             hcCcchhhhcC
Confidence            99999998864

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.97  E-value=3.5e-30  Score=238.67  Aligned_cols=263  Identities=14%  Similarity=0.172  Sum_probs=189.2

Q ss_pred             eeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCC
Q 019921            4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK   83 (334)
Q Consensus         4 l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~   83 (334)
                      +..|++++.++..++..+++.|+++++|+++++|+++..|++............++|.+++|||++++++.+.+++.| +
T Consensus       142 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g  220 (422)
T TIGR02155       142 EKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-G  220 (422)
T ss_pred             HHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-C
Confidence            356888888877788999999999999999999999999988765443222235899999999999999999999999 8


Q ss_pred             CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccc--cCcceEEEeeCC------CCcee
Q 019921           84 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP--APHVELKVCSDG------SSHVG  155 (334)
Q Consensus        84 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p--~~~~~~~i~~~~------~g~~G  155 (334)
                      +++++.||+||+++...........                          .|.+  .++..++++|++      .|+.|
T Consensus       221 ~~v~~~YG~tE~~~~~~~~~~~~~~--------------------------~g~~~~~~~~~~eivd~~~g~~v~~Ge~G  274 (422)
T TIGR02155       221 MKATDIYGLSEVIGPGVAMECVETQ--------------------------DGLHIWEDHFYPEIIDPHTGEVLPDGEEG  274 (422)
T ss_pred             CceEecccchhhcCCceeecccccC--------------------------CCceEecCeeEEEEECCCCCCCCCCCCee
Confidence            9999999999985322221110000                          1222  235667888853      57889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCC-C-----cEEEeeccCceeeeCceeeChHHHHHHHhcCC
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG-G-----NVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP  229 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~-G-----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  229 (334)
                      ||++++..            ...+ +.+||+|||+++++++ |     .+++.||.+|+|+++|.+|+|.+||++|.++|
T Consensus       275 elvvt~~~------------~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~  341 (422)
T TIGR02155       275 ELVFTTLT------------KEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMD  341 (422)
T ss_pred             EEEEecCC------------cccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCc
Confidence            99998732            2222 4579999999999875 4     46899999999999999999999999999999


Q ss_pred             CcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC
Q 019921          230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT  309 (334)
Q Consensus       230 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t  309 (334)
                      +|...+.+........+.+.+.|+..+......       ..+......++|.+.+++ .+..+.  ...++.+++||+|
T Consensus       342 ~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~-~~~~~~--~v~~~~~~~lp~~  411 (422)
T TIGR02155       342 ELSPHYQLELTRNGHMDELTLKVELKPESYTLR-------LHEQASLLAGEIQHTIKQ-EVGVSM--DVHLVEPGSLPRS  411 (422)
T ss_pred             CcCCCEEEEEEcCCCccEEEEEEEEecCccccc-------chHHHHHHHHHHHHHHHh-ccCcEE--EEEEECCCCccCC
Confidence            998555555555554556777777664321000       011122335678888887 555542  2222223689998


Q ss_pred             CCCccchH
Q 019921          310 STGKIRRD  317 (334)
Q Consensus       310 ~~GKv~r~  317 (334)
                      + ||++|.
T Consensus       412 ~-GK~~~~  418 (422)
T TIGR02155       412 E-GKARRV  418 (422)
T ss_pred             C-CCceEE
Confidence            8 999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.97  E-value=1.3e-29  Score=230.46  Aligned_cols=228  Identities=19%  Similarity=0.156  Sum_probs=175.6

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++.+  |+++++|++++.+.+..      ..++++|. ++||+++++++++.+++. 
T Consensus       159 ~~l~~G~~vv~~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~------~~l~slr~-i~gGa~l~~~l~~~~~~~-  228 (386)
T TIGR02372       159 LPSRRGLEAKQLAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD------YRLPGVVG-VSSGAPSTAATWRCLLAA-  228 (386)
T ss_pred             HHHHCCCeEEecCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC------cCCCccee-EecCCCCCHHHHHHHHHh-
Confidence            356789999998888999888888754  89999999999887642      13567775 678999999999999885 


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcC
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG  161 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g  161 (334)
                      +...+++.||+||+++++......                            ..+.+.|++++.+ +.     |.-  .|
T Consensus       229 g~~~v~~~YG~TEt~~i~~~~~~~----------------------------~~~~~~p~~~~~~-~~-----~~~--~g  272 (386)
T TIGR02372       229 GLARLLEVYGATETGGIGLREAPD----------------------------DPFRLLPDLACFA-DT-----LSS--AG  272 (386)
T ss_pred             cccchhheeccccccccccccCCC----------------------------CCcccCCCccccC-CC-----ccC--CC
Confidence            235799999999998754321100                            1456677666543 11     100  01


Q ss_pred             cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEec
Q 019921          162 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN  241 (334)
Q Consensus       162 ~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  241 (334)
                                         ...|++|||+++++++|+++|.||.||+|+++|++|+|.+||++|.+||+|.+++|..   
T Consensus       273 -------------------~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~---  330 (386)
T TIGR02372       273 -------------------LARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL---  330 (386)
T ss_pred             -------------------ccceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc---
Confidence                               1236899999999999999999999999999999999999999999999999998863   


Q ss_pred             CcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          242 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       242 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                        .++.+.++|+++++..              .....+++++++++ .++.|++|+.+.++ ++||+|++||++
T Consensus       331 --~g~~~~a~vv~~~~~~--------------~~~~~~~l~~~~~~-~L~~~~~P~~i~~~-~~lP~t~~GKi~  386 (386)
T TIGR02372       331 --DGRRLKAFIVVAEDAD--------------EAELEIELRATAAR-HLPAPARPDRFRFG-TELPRTGAGKLA  386 (386)
T ss_pred             --CCceEEEEEEECCCCC--------------hHHHHHHHHHHHHH-hCCCCCCCcEEEEc-ccCCCCCCCCcC
Confidence              2457888888765310              01224678899999 79999999998875 889999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.97  E-value=4.2e-31  Score=244.61  Aligned_cols=190  Identities=31%  Similarity=0.502  Sum_probs=157.9

Q ss_pred             ceeeccceEEEcCCCC---HHHHHHHHHhhcceEEEechHHHHHHHHHHhhc--cccCCCCCccEEEeccCCCCHHHHHH
Q 019921            2 AMLMVGACHVFIPKFE---SKSALEAVEQHCVTSLITVPAIMADLATLIRVK--KTWKGRDSVKKILNGGGGLPSELMKE   76 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~---~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~--~~~~~~~~lr~i~~gG~~l~~~~~~~   76 (334)
                      .+++.|+++++++...   ++.+++.++++++|+++++|+++..+++..+..  .....+++||.++++|+++++++.++
T Consensus       217 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~  296 (417)
T PF00501_consen  217 AALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRR  296 (417)
T ss_dssp             HHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHH
T ss_pred             ccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccc
Confidence            5688999999998754   477899999999999999999999998843332  11225778999999999999999999


Q ss_pred             HHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------
Q 019921           77 ATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------  150 (334)
Q Consensus        77 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------  150 (334)
                      +++.++..++++.||+||++.+++........                     ..+.++|.|+|+++++|+|++      
T Consensus       297 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~ivd~~~~~~~~  355 (417)
T PF00501_consen  297 LRKAFGNAPIINLYGSTETGSIATIRPPEDDI---------------------EKPGSVGKPLPGVEVKIVDPNTGEPLP  355 (417)
T ss_dssp             HHHHHTTSEEEEEEEEGGGSSEEEEEETTTHH---------------------SSTTSEBEESTTEEEEEECTTTSSBES
T ss_pred             cccccccccceecccccccceeeecccccccc---------------------ccccccccccccccccccccccccccc
Confidence            99999445999999999999877644311100                     033369999999999999976      


Q ss_pred             CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeC
Q 019921          151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSG  212 (334)
Q Consensus       151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~  212 (334)
                      .|+.|||+++|++++.||+++++.+...|..++||+|||+|++|+||+++++||.||+||++
T Consensus       356 ~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  356 PGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             TTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             ccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            67889999999999999999988888888666899999999999999999999999999964

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.95  E-value=2.4e-27  Score=212.29  Aligned_cols=296  Identities=22%  Similarity=0.259  Sum_probs=213.8

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      +++..|+|+++-.+|+++++|+.+.+|+||+...+--+.+.|+..+..+..  .-+.+|.++  |..+.+++|+.|.+.|
T Consensus       304 ~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e--r~HkVRla~--GNGLR~diW~~Fv~RF  379 (649)
T KOG1179|consen  304 GCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE--RQHKVRLAY--GNGLRPDIWQQFVKRF  379 (649)
T ss_pred             HHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh--cCceEEEEe--cCCCCchHHHHHHHHc
Confidence            467899999999999999999999999999999999988888877544332  356788777  9999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEE--E
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRIL--T  159 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~--v  159 (334)
                      +-.++.+.||+||..+..+.....-.-.   +...--.....|-++....+ ..|.|+.+-+--.+.-.+||+|.++  |
T Consensus       380 g~~~IgE~YgaTEgn~~~~N~d~~vGA~---G~~~~~~~~l~p~~LIk~D~-~t~E~iRd~~G~Ci~~~~GEpGlLv~~i  455 (649)
T KOG1179|consen  380 GIIKIGEFYGATEGNSNLVNYDGRVGAC---GFMSRLLKLLYPFRLIKVDP-ETGEPIRDSQGLCIPCPPGEPGLLVGKI  455 (649)
T ss_pred             CCCeEEEEeccccCcceeeeecCccccc---cchhhhhhhccceEEEEecC-CCCceeecCCceEEECCCCCCceEEEEe
Confidence            5567999999999886555442211100   00000000000000000000 0111111111000111167888664  2


Q ss_pred             cCcch---hhhhhhcccCCCCc-----c-CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921          160 RGAHV---MLRYWDQFLAKPSV-----S-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG  230 (334)
Q Consensus       160 ~g~~~---~~gy~~~~~~~~~~-----~-~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~  230 (334)
                      .....   |.||.+..+.+...     | .+|-||.|||+-.+|+.|++||.+|..|.+...|++|++.|+|++|..+..
T Consensus       456 ~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~  535 (649)
T KOG1179|consen  456 VQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDF  535 (649)
T ss_pred             ccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhcc
Confidence            33344   89999976666543     2 478899999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEecCcceeEEE-EEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC
Q 019921          231 IIGIVVVGIANARLTEMVV-ACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT  309 (334)
Q Consensus       231 v~~~~v~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t  309 (334)
                      +.|+.|.|+.-++...+.- |.|++++.                ...+.+.+-+++++ .||+|.+|..+.+ .+++++|
T Consensus       536 ~~dv~VYGV~VP~~EGRaGMAaI~~~p~----------------~~~d~~~l~~~l~~-~LP~YA~P~FlRl-~~~i~~T  597 (649)
T KOG1179|consen  536 LQDVNVYGVTVPGYEGRAGMAAIVLDPT----------------TEKDLEKLYQHLRE-NLPSYARPRFLRL-QDEIEKT  597 (649)
T ss_pred             ccceeEEEEecCCccCccceEEEEecCc----------------ccchHHHHHHHHHh-hCccccchHHHHH-Hhhhhcc
Confidence            9999999998765333333 44444554                24678889999999 7999999998876 4889999


Q ss_pred             CCCccchHHHHHHH
Q 019921          310 STGKIRRDEVRREV  323 (334)
Q Consensus       310 ~~GKv~r~~l~~~~  323 (334)
                      .+-|.++..|.++-
T Consensus       598 gTFKl~K~~L~~eg  611 (649)
T KOG1179|consen  598 GTFKLQKTELQKEG  611 (649)
T ss_pred             cchhhHHHHHHHcc
Confidence            99999999998873

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.90  E-value=3.9e-23  Score=184.52  Aligned_cols=123  Identities=20%  Similarity=0.249  Sum_probs=111.7

Q ss_pred             CCceEeccceEEE-cCCCcEEEeeccCceeeeCc---eeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEecc
Q 019921          181 GEVWLDTGDIGSI-DDGGNVWLVGRRNGRIKSGG---ENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRE  256 (334)
Q Consensus       181 ~~~~~~TGDl~~~-~~~G~l~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  256 (334)
                      .+|||+|||+|++ |++|+++|.||.+     +|   ++|+|. ||++|.+||+|.+++|++++++..++.++|+|++..
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~  280 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL  280 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence            6799999999998 7999999999998     78   799999 999999999999999999999999999999998763


Q ss_pred             CccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHHHHHHHhhcccC
Q 019921          257 SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSL  330 (334)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~~~~l  330 (334)
                      .                  .+.++|++++++ .++. ++|+.+.++ ++||+|++||++|+.|+.++.+....|
T Consensus       281 ~------------------~~~~el~~~l~~-~L~~-kvP~~v~~v-~~lP~t~~GKi~R~~Lr~~~~~~~~~l  333 (365)
T PRK09188        281 P------------------ADEKSLRARLAG-AKPP-KPPEHIQPV-AALPRDADGTVRDDILRLIAMNQIDEL  333 (365)
T ss_pred             C------------------CCHHHHHHHHHh-hchh-cCCcEEEEE-CCCCCCCCCCccHHHHHHHhhcccccc
Confidence            2                  456789999999 7999 999998875 779999999999999999988777766

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.90  E-value=7.9e-22  Score=183.47  Aligned_cols=214  Identities=15%  Similarity=0.132  Sum_probs=145.9

Q ss_pred             eeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCC
Q 019921            4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK   83 (334)
Q Consensus         4 l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~   83 (334)
                      +..|++++....  ....++.++++++|++.++|+++..+++............++|.+++||+++++++.+++.+.| +
T Consensus       153 ~~~Ga~vi~~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g  229 (445)
T TIGR03335       153 REVGMSIIPEGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-G  229 (445)
T ss_pred             HHcCCEEEcCCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-C
Confidence            456776654433  3467899999999999999999988887765543322346899999999999999999999999 8


Q ss_pred             CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeEE
Q 019921           84 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRI  157 (334)
Q Consensus        84 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Gel  157 (334)
                      +++++.||+||++. +..+.  ...                         ....+.+.+.++|+|++      .|+.|||
T Consensus       230 ~~v~~~YG~TE~~~-~~~c~--~~~-------------------------g~h~~~d~~~vEIvDp~~~~~vp~Ge~GEL  281 (445)
T TIGR03335       230 CEVYNTYGSTEGTM-CGECQ--AVA-------------------------GLHVPEDLVHLDVYDPRHQRFLPDGECGRI  281 (445)
T ss_pred             CcEEecCChhhhhh-eEEec--CCC-------------------------CccccCCceEEEEEcCCCCCCCcCCCceEE
Confidence            99999999999862 21111  100                         02233356778888876      4788999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC-C----Cc----EEEeeccCceeeeCceeeChHHHHHHHhcC
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD-G----GN----VWLVGRRNGRIKSGGENVYPEEVEAVLLQH  228 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~-~----G~----l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  228 (334)
                      ++++-....    .....     +-=.|+|||++++.. +    |+    +...||.||+++++|.+|+|.+||++|.+.
T Consensus       282 vvT~L~~~~----~r~~~-----PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~  352 (445)
T TIGR03335       282 VLTTLLKPG----ERCGS-----LLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQR  352 (445)
T ss_pred             EEEecCCCC----ccCCc-----eEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhcc
Confidence            998732100    00001     112499999998632 2    32    445699999999999999999999999994


Q ss_pred             ---CCcceEEEEEEecC-cceeEEEEEEEeccC
Q 019921          229 ---PGIIGIVVVGIANA-RLTEMVVACVRLRES  257 (334)
Q Consensus       229 ---~~v~~~~v~~~~~~-~~~~~~~~~v~~~~~  257 (334)
                         +++...+-+.+..+ .....+.+.|+..+.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~  385 (445)
T TIGR03335       353 ENMDSLTGEYEAFLYGEEEGEITLRVSLECEDK  385 (445)
T ss_pred             CCCCCCCccEEEEEecCCCCCceEEEEEEecCc
Confidence               66654443333222 223345555555443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.89  E-value=5.8e-21  Score=170.60  Aligned_cols=210  Identities=21%  Similarity=0.227  Sum_probs=165.3

Q ss_pred             ccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCCCc
Q 019921            6 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAK   85 (334)
Q Consensus         6 ~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~   85 (334)
                      .|++++...+-+.+..+++++.+++|++.++|+++..|++.++..+....-.+||.+++|+|++++++.+.+.+.| |+.
T Consensus       159 ig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~  237 (438)
T COG1541         159 IGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCK  237 (438)
T ss_pred             hCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCc
Confidence            4677777777788999999999999999999999999999998876434556899999999999999999999999 999


Q ss_pred             eEcccccccccccc-cccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeEEE
Q 019921           86 LISAYGMTETSSSL-TFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRIL  158 (334)
Q Consensus        86 ~~~~yG~tE~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Gel~  158 (334)
                      .++.||+||..+.. ..+.....                           ....-+...++++||+      .|+.|||+
T Consensus       238 ~~diYGltE~~g~g~~eC~~~~g---------------------------lhi~eD~~~~Ei~dP~t~e~l~dge~GelV  290 (438)
T COG1541         238 AFDIYGLTEGFGPGAGECTERNG---------------------------LHIWEDHFIFEIVDPETGEQLPDGERGELV  290 (438)
T ss_pred             eeeccccccccCCcccccccccC---------------------------CCcchhhceeeeecCCcCccCCCCCeeEEE
Confidence            99999999997664 22221110                           2333456778888865      67789999


Q ss_pred             EcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCC----Cc-----EEEeeccCceeeeCceeeChHHHHHHHhcCC
Q 019921          159 TRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG----GN-----VWLVGRRNGRIKSGGENVYPEEVEAVLLQHP  229 (334)
Q Consensus       159 v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~----G~-----l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  229 (334)
                      ++.-.            +... +--.|+|||+..+.++    |+     ..+.||+||++++.|.+|+|..||++|.+.+
T Consensus       291 ~T~L~------------~~~~-PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~  357 (438)
T COG1541         291 ITTLT------------KEGM-PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIP  357 (438)
T ss_pred             EEecc------------ccCc-ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhccc
Confidence            98632            0000 2225999999998763    33     4689999999999999999999999999999


Q ss_pred             Ccc-eEEEEEEecCcceeEEEEEEEeccC
Q 019921          230 GII-GIVVVGIANARLTEMVVACVRLRES  257 (334)
Q Consensus       230 ~v~-~~~v~~~~~~~~~~~~~~~v~~~~~  257 (334)
                      .+. +..++... .+..+.+.+.|++.+.
T Consensus       358 ~~~~~yqi~~~~-~~~~d~L~V~vE~~~~  385 (438)
T COG1541         358 EVTPHYQIILTR-NGGLDELTVRVELENE  385 (438)
T ss_pred             CCCceEEEEEec-CCCCceEEEEEEecCc
Confidence            998 55555555 5556678888887763

>PTZ00297 pantothenate kinase; Provisional

Probab=99.89  E-value=1.9e-22  Score=205.87  Aligned_cols=272  Identities=17%  Similarity=0.142  Sum_probs=187.0

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccc-------------------------c---
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT-------------------------W---   53 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~-------------------------~---   53 (334)
                      .+++.|+++..   +++..+++.|++++||+++++|.++..+.........                         .   
T Consensus       665 ~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~  741 (1452)
T PTZ00297        665 GLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSS  741 (1452)
T ss_pred             HHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcH
Confidence            35678888764   4789999999999999999999999876543211100                         0   


Q ss_pred             ------------CCCCCccEEEeccC--CCCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcc
Q 019921           54 ------------KGRDSVKKILNGGG--GLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF  119 (334)
Q Consensus        54 ------------~~~~~lr~i~~gG~--~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~  119 (334)
                                  ..-.++|.+++||+  +++..+     ..  ++++..+||+||+.   +.......            
T Consensus       742 l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l-----~~--~i~i~~g~glTE~~---~~~~~~~~------------  799 (1452)
T PTZ00297        742 LLRFIFFRATQELLGGCVEKIVLCVSEESTSFSL-----LE--HISVCYVPCLREVF---FLPSEGVF------------  799 (1452)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEECCCccccChHH-----hC--CceEEEecceEEee---eecCCCCc------------
Confidence                        00146888888873  444332     22  57788899999943   22111110            


Q ss_pred             cCCCCCCCCCCCceeeccccCcceEEEeeCC----CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC
Q 019921          120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD  195 (334)
Q Consensus       120 ~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~----~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~  195 (334)
                                 .  ..|.|+|++++++.+.+    .+..|||++++       +++++.|...+  ++|+         +
T Consensus       800 -----------~--~~G~PlpgvEvKI~~~~E~~~~~~~GEIlvr~-------~kdpe~T~e~~--~gW~---------~  848 (1452)
T PTZ00297        800 -----------C--VDGTPAPSLQVDLEPFDEPSDGAGIGQLVLAK-------KGEPRRTLPIA--AQWK---------R  848 (1452)
T ss_pred             -----------c--cCCeecCceEEEEcccccccCCCCCCeEEEEE-------CCChHHHHHhh--CcCc---------c
Confidence                       1  24999999999998642    23459999964       47777776643  3553         6


Q ss_pred             CCcEEEeeccCceee-eCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccc-cccccccc-----
Q 019921          196 GGNVWLVGRRNGRIK-SGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQW-SESNCDQS-----  268 (334)
Q Consensus       196 ~G~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~-----  268 (334)
                      ||+|.|+||.+|+|| .+|++|+|..||+++.++|.|.+++|++-..    ..++|+|++..+... ........     
T Consensus       849 dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~----k~lvALVvpd~e~l~~~wa~~~gi~~~~~  924 (1452)
T PTZ00297        849 DRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS----RPIIAIVSPNRDTVEFEWRQSHCMGEGGG  924 (1452)
T ss_pred             CCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC----CceEEEEEeCHHHHHHHHHHHcCCCcccc
Confidence            899999999999999 9999999999999999999999999998543    238888888764332 11100000     


Q ss_pred             ----cchhhh-----hccHHHHHHHHHhcCCCCcccceEEEeccCCcc-----CCCCCccchHHHHHHHHhhcccCCCC
Q 019921          269 ----SKNKEL-----LLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP-----LTSTGKIRRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       269 ----~~~~~~-----~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP-----~t~~GKv~r~~l~~~~~~~~~~l~~~  333 (334)
                          ....+.     ....+.++...+.+.+..+.+++.+.++.++|-     .|++.|+.|+.+.+.|.++|++||.+
T Consensus       925 ~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~ 1003 (1452)
T PTZ00297        925 PARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSD 1003 (1452)
T ss_pred             ccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhcc
Confidence                000000     011222322233335677888887776656663     89999999999999999999999985

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.85  E-value=2.3e-20  Score=182.28  Aligned_cols=208  Identities=22%  Similarity=0.337  Sum_probs=171.4

Q ss_pred             CceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            1 MAMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         1 l~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      |.++..|+++++.+.   .++..+.+.++++++|.+..+|+++..+...............+|.+++||++++.++.+.+
T Consensus       426 f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~  505 (642)
T COG1020         426 FGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRL  505 (642)
T ss_pred             HHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHH
Confidence            356889999999875   68999999999999999999999999887763222221223359999999999999999999


Q ss_pred             HhhCC-CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----C
Q 019921           78 TNSFP-KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----S  151 (334)
Q Consensus        78 ~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~  151 (334)
                      .+..+ ...+.+.||.||+....+..........                     ..++|.|+++..+.+.|..     .
T Consensus       506 ~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~---------------------~~piG~p~~n~~~~ild~~~~~~p~  564 (642)
T COG1020         506 LQLAALARRLLNLYGPTEATLDAPSFPISAELES---------------------RVPIGRPVANTQLYILDQGLRPLPL  564 (642)
T ss_pred             HHhccccceEeeccCccHHhhheeeEEcccccCC---------------------CCCcceeeCCCeEEEECCCCCcCCC
Confidence            88764 4789999999996654444433322211                     1149999999999998843     5


Q ss_pred             CceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCC
Q 019921          152 SHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP  229 (334)
Q Consensus       152 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  229 (334)
                      +..||+++.|.+++.||+++++.+...|..+.+|+|||++++.+||.+.++||.|+++|++|.++.+.+||..+.++|
T Consensus       565 gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         565 GVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             CCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            677999999999999999999999988865458999999999999999999999999999999999999999998765

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=1.1e-19  Score=177.31  Aligned_cols=291  Identities=17%  Similarity=0.187  Sum_probs=198.3

Q ss_pred             eeeccceEEEcCCC---CHHHHHHHHHhhcceEEEechHHHHHHHHHHhhc-----------cccCCCCCccEEEeccCC
Q 019921            3 MLMVGACHVFIPKF---ESKSALEAVEQHCVTSLITVPAIMADLATLIRVK-----------KTWKGRDSVKKILNGGGG   68 (334)
Q Consensus         3 ~l~~G~~~v~~~~~---~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~-----------~~~~~~~~lr~i~~gG~~   68 (334)
                      .|++|+.++++-..   ++.++.+.+++++++.+..+|++.++++......           +.....+.|+....+|++
T Consensus       259 ~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep  338 (1032)
T KOG1178|consen  259 LLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEP  338 (1032)
T ss_pred             HhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCc
Confidence            46677777776543   3789999999999999999999988777654331           111123489999999999


Q ss_pred             CCHHHHHHHHhhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCcee-eccccCcceEEEe
Q 019921           69 LPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVC-VGKPAPHVELKVC  147 (334)
Q Consensus        69 l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~p~~~~~~~i~  147 (334)
                      +...++..+.+.+...-+..-|+.++..+..+..........          ..+.+....++..+ +|.+..   ++..
T Consensus       339 ~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~l----------l~~~~v~~~p~~~~~~~~~~~---~~~~  405 (1032)
T KOG1178|consen  339 LLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVL----------LTNENVYSVPKFDSIIGSLTV---LESL  405 (1032)
T ss_pred             cchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccce----------ecceeEEeccchhhccCCCcc---eeee
Confidence            999999977665533333344888887765443322211100          00111111111111 222222   1111


Q ss_pred             eCCCCceeEEEE----------cCcchhhhhhhcccCCCC---ccC--CCceEeccceEEEcCCCcEEEeeccCceeeeC
Q 019921          148 SDGSSHVGRILT----------RGAHVMLRYWDQFLAKPS---VST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSG  212 (334)
Q Consensus       148 ~~~~g~~Gel~v----------~g~~~~~gy~~~~~~~~~---~~~--~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~  212 (334)
                      .. .+..|+.++          .+.++..| +..++....   ..+  .+.+|+|||+|+..++|.+.+.||.|++||.+
T Consensus       406 ~~-~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~r  483 (1032)
T KOG1178|consen  406 YR-AGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDR  483 (1032)
T ss_pred             ec-cCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEc
Confidence            11 111122222          22333334 222222221   111  34689999999999999999999999999999


Q ss_pred             ceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCC
Q 019921          213 GENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG  292 (334)
Q Consensus       213 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  292 (334)
                      |.++...+|+.++..+|.|.++.+....+...++.+.+||+.....               .......|+.++.. .++.
T Consensus       484 G~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~---------------~~~~~~~i~~~l~~-~La~  547 (1032)
T KOG1178|consen  484 GVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGS---------------KSVLIRDIRNYLKK-ELAS  547 (1032)
T ss_pred             cEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCC---------------CchhHHHHHHhhcc-cccc
Confidence            9999999999999999999999999999988899999999987751               12347889999999 8999


Q ss_pred             cccceEEEeccCCccCCCCCccchHHHHHHHHhh
Q 019921          293 FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       293 ~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      |++|..++.+ +.+|.|++|||++++|.+ +..+
T Consensus       548 y~vPs~~V~l-~~vPl~~~GKvDkkaL~~-~~s~  579 (1032)
T KOG1178|consen  548 YMLPSLVVPL-AKVPLNPNGKVDKKALLE-YNSK  579 (1032)
T ss_pred             eecceEEEEh-hhCCcCCCCCcChhhhhh-hhhh
Confidence            9999977664 779999999999999999 5444

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.64  E-value=3.3e-14  Score=130.21  Aligned_cols=174  Identities=16%  Similarity=0.162  Sum_probs=123.1

Q ss_pred             CHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCCCceEccccccccc
Q 019921           17 ESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETS   96 (334)
Q Consensus        17 ~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~   96 (334)
                      +.+.+++.|++++++++.++|+++..|++.......  . .+++.++++||.++++..+.+++.| |+++++.||+|| |
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g  249 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-G  249 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-h
Confidence            467899999999999999999999999998766443  2 4799999999999999999999999 899999999999 5


Q ss_pred             ccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEE--EeeCCCCceeEEEEcCcchhhhhhhcccC
Q 019921           97 SSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELK--VCSDGSSHVGRILTRGAHVMLRYWDQFLA  174 (334)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~--i~~~~~g~~Gel~v~g~~~~~gy~~~~~~  174 (334)
                      .++..+...                            ..+.-...+.++  ++|++.  .++.+|++-      .+.   
T Consensus       250 ~la~eC~~g----------------------------~lHl~ed~~~vE~~ivD~~~--~~~~ViT~L------~n~---  290 (430)
T TIGR02304       250 FLASTCRCG----------------------------TLHLNEDLVHIEKQYLDEHK--RFVPIITDF------TRT---  290 (430)
T ss_pred             heEEecCCC----------------------------CEEEccccEEEEeeEECCCC--ceEEEEecC------CCc---
Confidence            433222111                            022222333444  777642  245566541      111   


Q ss_pred             CCCccCCCceEeccceEEEcCC----Cc----E-EEeeccCceeee---Ccee--eChHHHHHHH-hcCCCcceEEEEE
Q 019921          175 KPSVSTGEVWLDTGDIGSIDDG----GN----V-WLVGRRNGRIKS---GGEN--VYPEEVEAVL-LQHPGIIGIVVVG  238 (334)
Q Consensus       175 ~~~~~~~~~~~~TGDl~~~~~~----G~----l-~~~GR~~d~i~~---~G~~--v~~~~iE~~l-~~~~~v~~~~v~~  238 (334)
                      ..    +-=.|+|||++.+.++    |.    + .+.||.+|+++.   +|..  ++|..+++++ ...+.|.+..++-
T Consensus       291 ~~----PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q  365 (430)
T TIGR02304       291 TQ----PIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQ  365 (430)
T ss_pred             cc----eEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEE
Confidence            00    1124999999887543    43    3 378999999984   4544  5999998874 4578888887774

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.51  E-value=4e-13  Score=129.13  Aligned_cols=306  Identities=14%  Similarity=0.122  Sum_probs=192.6

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccc-c----CCCCCccEEEeccCCCCHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKT-W----KGRDSVKKILNGGGGLPSE   72 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~-~----~~~~~lr~i~~gG~~l~~~   72 (334)
                      ..+++|.+.++++.    -++..++..+++++|.-++.+=+.++.+......... .    .+.++ ..++..-++....
T Consensus      1005 lgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~-s~vv~~~~RPr~a 1083 (1363)
T KOG3628|consen 1005 LGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSS-SIVVPAEERPRIA 1083 (1363)
T ss_pred             HHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccccc-ceeeecCCccHHH
Confidence            35678888888775    4689999999999999998887777766543322111 0    01111 3455556677778


Q ss_pred             HHHHHHhhCCC-----CceEcccccccccccccccccCCCCC---CCCCCCCCcccCCC-CCCCCCCCceeeccccCcce
Q 019921           73 LMKEATNSFPK-----AKLISAYGMTETSSSLTFMTLYDPTL---ETPGQLPQAFGNVT-PNSVHQPQGVCVGKPAPHVE  143 (334)
Q Consensus        73 ~~~~~~~~~~~-----~~~~~~yG~tE~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~g~p~~~~~  143 (334)
                      +.+.|.+.|..     ..+...|+.-=.-.+++..+-..+..   .....+.++.-... ....+...-.-.|...++++
T Consensus      1084 li~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~ 1163 (1363)
T KOG3628|consen 1084 LIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTD 1163 (1363)
T ss_pred             HHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccce
Confidence            88888877621     12333444332222222211111100   00011111100000 01111112223588889999


Q ss_pred             EEEeeCC------CCceeEEEEcCcchhhhhhhcccCC-CCc---------cCCCceEeccceEEEcC------C----C
Q 019921          144 LKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAK-PSV---------STGEVWLDTGDIGSIDD------G----G  197 (334)
Q Consensus       144 ~~i~~~~------~g~~Gel~v~g~~~~~gy~~~~~~~-~~~---------~~~~~~~~TGDl~~~~~------~----G  197 (334)
                      +.|++++      .|+.||||+.+.+-+.+|++..+.. ...         ..+..|-||||+|++..      +    .
T Consensus      1164 i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~ 1243 (1363)
T KOG3628|consen 1164 IAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHD 1243 (1363)
T ss_pred             eEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeee
Confidence            9999998      7899999999988888777542211 111         12457999999999732      2    3


Q ss_pred             cEEEeeccCceeeeCceeeChHHHHHHHh-cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhc
Q 019921          198 NVWLVGRRNGRIKSGGENVYPEEVEAVLL-QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLL  276 (334)
Q Consensus       198 ~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  276 (334)
                      .+|++|-.++.+..+|.+.+|.+||..++ .|+.|..++|+-.     +..++.++++..+                  .
T Consensus      1244 ~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~-----~glvVvviE~~gq------------------~ 1300 (1363)
T KOG3628|consen 1244 LLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA-----TGLVVVVIECHGQ------------------Q 1300 (1363)
T ss_pred             eEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEee-----CCeEEEEEEecCc------------------h
Confidence            58999999999999999999999998887 5899999999964     4456777776653                  2


Q ss_pred             cHHHHHHHHHhcCCCCcccceEEEeccC--CccCCCCCccchHHHHHH-HHhhcccCC
Q 019921          277 SSEVLRQHCREKNLTGFKAPRLFVLWRK--PFPLTSTGKIRRDEVRRE-VMSHLKSLP  331 (334)
Q Consensus       277 ~~~~l~~~~~~~~l~~~~~p~~~~~~~~--~lP~t~~GKv~r~~l~~~-~~~~~~~l~  331 (334)
                      ....|...+.+..|..+.+.-.++.+++  .||+++.|..+|..+++. +.++|+-.|
T Consensus      1301 ~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~~~~ 1358 (1363)
T KOG3628|consen 1301 ELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKLDPIY 1358 (1363)
T ss_pred             hHhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhcccceee
Confidence            3344445544445556655555555554  699999999999999865 666776655

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.31  E-value=1.1e-11  Score=85.13  Aligned_cols=71  Identities=39%  Similarity=0.628  Sum_probs=59.9

Q ss_pred             HHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccc--e
Q 019921          220 EVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAP--R  297 (334)
Q Consensus       220 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p--~  297 (334)
                      +||++|.+||+|.+++|++++++..++.+++++++  .                    .++|++++++ .++.|++|  .
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--~--------------------~~~i~~~~~~-~l~~~~~P~~~   57 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--D--------------------EEEIRDHLRD-KLPPYMVPRRI   57 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--H--------------------HHHHHHHHHH-HS-GGGS-SEE
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--e--------------------ecccccchhh-hCCCcceeeEE
Confidence            69999999999999999999999889999999986  2                    3889999999 69999999  5


Q ss_pred             EEEeccCCccCCCCCc
Q 019921          298 LFVLWRKPFPLTSTGK  313 (334)
Q Consensus       298 ~~~~~~~~lP~t~~GK  313 (334)
                      .++.+.++||+|++||
T Consensus        58 ~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen   58 RFVRLDEELPRTPSGK   73 (73)
T ss_dssp             EEEEESSSEEBETTSS
T ss_pred             EEccccCcCCCCCCCC
Confidence            5554434499999998

...

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.05  E-value=4.4e-09  Score=102.00  Aligned_cols=304  Identities=13%  Similarity=0.119  Sum_probs=180.0

Q ss_pred             ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhc---------cccCCCCCccEEEeccCCC
Q 019921            2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVK---------KTWKGRDSVKKILNGGGGL   69 (334)
Q Consensus         2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~---------~~~~~~~~lr~i~~gG~~l   69 (334)
                      .++++|.|.+..+.   ..|..+..++.++|++++..=-..+.+........         .+-.+++++|.+.+....+
T Consensus       331 ~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~v  410 (1363)
T KOG3628|consen  331 VALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAV  410 (1363)
T ss_pred             hhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeec
Confidence            47899999999887   67888999999999999876533333222111111         1114688999999999999


Q ss_pred             CHHHHHHHHhhC----C-----------------CCceEcccccccccccccccccCCCCCCCCCCCCCc----ccC---
Q 019921           70 PSELMKEATNSF----P-----------------KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA----FGN---  121 (334)
Q Consensus        70 ~~~~~~~~~~~~----~-----------------~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~----~~~---  121 (334)
                      +.+..+.....+    +                 |.-++..=+++|.+......+...............    ...   
T Consensus       411 d~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v  490 (1363)
T KOG3628|consen  411 DTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEV  490 (1363)
T ss_pred             chHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEE
Confidence            988765544332    1                 112223333455554333222211100000000000    000   


Q ss_pred             CCCCCCCCCCceeeccccC-cceEEEeeCC------CCceeEEEEcCcchhhhhhhcccCCCCccC------------CC
Q 019921          122 VTPNSVHQPQGVCVGKPAP-HVELKVCSDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVST------------GE  182 (334)
Q Consensus       122 ~~~~~~~~~~~~~~g~p~~-~~~~~i~~~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~------------~~  182 (334)
                      ...+..+...+-.+|.-.| ++.+.+++++      .+++|||||.+++....||.-+..+...|.            ..
T Consensus       491 ~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~  570 (1363)
T KOG3628|consen  491 DTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNV  570 (1363)
T ss_pred             cchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccc
Confidence            1111111112222444444 4556667776      789999999999999999988777766552            23


Q ss_pred             ceEeccceEEEcCCCcEEEeeccCceee-eCceeeChHHHH----------HHHhcCCCcceEEEEEEecCcceeEEEEE
Q 019921          183 VWLDTGDIGSIDDGGNVWLVGRRNGRIK-SGGENVYPEEVE----------AVLLQHPGIIGIVVVGIANARLTEMVVAC  251 (334)
Q Consensus       183 ~~~~TGDl~~~~~~G~l~~~GR~~d~i~-~~G~~v~~~~iE----------~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  251 (334)
                      .|.|||=+|+++++ .++++|-.+|.+. ..|..++..+|-          -+.+..+.|-++.++-      .++..++
T Consensus       571 ~FmRtGLlGFv~~g-ki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv  643 (1363)
T KOG3628|consen  571 PFMRTGLLGFVHNG-KIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVV  643 (1363)
T ss_pred             hhhhhcceeeeeCC-eEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEE
Confidence            68999999999975 4555555555555 888877765543          3334456777777774      4556666


Q ss_pred             EEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHHHHHHHh
Q 019921          252 VRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS  325 (334)
Q Consensus       252 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~~~~~  325 (334)
                      ++-++..          .+++..+...+-++....-|++..|.+   .++..++||||+.|-|.-.+++..|.+
T Consensus       644 ~~esP~a----------~e~~~~q~~~~v~q~l~~iHqv~vyCi---livP~~tLPrt~~~Gi~~~~~k~~F~~  704 (1363)
T KOG3628|consen  644 VLESPDA----------TEENSFQWMSRVFQALDSIHQVGVYCI---LIVPANTLPRTPLGGIHNNECKQAFLE  704 (1363)
T ss_pred             EEeCcch----------hhhhhhhHHHHHHHHHHHHhcccceEE---EEeccccCCCccccccccHHHHHHHHc
Confidence            6666652          222223333344444444455655555   344457899999988999999988754

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.08  E-value=0.00011  Score=66.39  Aligned_cols=145  Identities=16%  Similarity=0.129  Sum_probs=91.2

Q ss_pred             CCHHHHHHHH----HhhcceEEEechHHHHHHHHHHhhccccCCCC-CccEEEecc------CCCCH-HHHHHHHhhCCC
Q 019921           16 FESKSALEAV----EQHCVTSLITVPAIMADLATLIRVKKTWKGRD-SVKKILNGG------GGLPS-ELMKEATNSFPK   83 (334)
Q Consensus        16 ~~~~~~~~~l----~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~-~lr~i~~gG------~~l~~-~~~~~~~~~~~~   83 (334)
                      ++.+.++..+    .+.++..++++|.++..++...+.......++ ..+.+..||      +.+++ +..+.+.+.| |
T Consensus       175 ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~-G  253 (365)
T PF04443_consen  175 LDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVF-G  253 (365)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHH-C
Confidence            6776666555    46778999999998888877766655433333 344555554      23554 6666677778 6


Q ss_pred             C----ceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCc
Q 019921           84 A----KLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSH  153 (334)
Q Consensus        84 ~----~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~  153 (334)
                      +    .+++.|||||.......+....                              .++|-. +.+.|++      .|+
T Consensus       254 v~~~~~i~~~ygmtEl~s~~~~~~~~~------------------------------~~~p~w-V~iRDp~tl~~~~~Ge  302 (365)
T PF04443_consen  254 VIPIENIYDMYGMTELNSQAYECGHGH------------------------------FHVPPW-VIIRDPETLEPLPPGE  302 (365)
T ss_pred             CCCHHHeeeeeeccccchhheeCCCCc------------------------------ccCCCe-EEEECCCCCcCCCCCC
Confidence            5    8999999999775433322111                              122211 4455654      677


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCC--------CcEEEeeccC
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG--------GNVWLVGRRN  206 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~--------G~l~~~GR~~  206 (334)
                      .|-|.+-++....              --+..-|.|+|.++.+        .++.++||.+
T Consensus       303 ~Gli~vidl~~~s--------------~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~  349 (365)
T PF04443_consen  303 TGLIQVIDLANTS--------------YPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRAD  349 (365)
T ss_pred             eeEEEEEcccccC--------------CCcEEEEcceeeecCCCCCCCccCCEEEEEeCCC
Confidence            8888776533210              1123679999987654        2699999986

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=98.03  E-value=6.4e-05  Score=54.30  Aligned_cols=91  Identities=22%  Similarity=0.346  Sum_probs=55.5

Q ss_pred             ceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCC
Q 019921          213 GENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG  292 (334)
Q Consensus       213 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  292 (334)
                      |.+|+|.+||++|.++|++...+.+.+...+..+.+.+.|++.+....         ...+.....+.+.+.+++ .+. 
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~---------~~~~~~~l~~~i~~~lk~-~lg-   69 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSD---------DAEDLEALAERIAERLKE-RLG-   69 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCT---------THHHHHHHHHHHHHHHHH-HHS-
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCc---------chHHHHHHHHHHHHHHHh-hcC-
Confidence            789999999999999999996666666666678888888988886210         001123345666677766 232 


Q ss_pred             cccceEEEeccCCccCCCCCccch
Q 019921          293 FKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       293 ~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      . .|..-++-..+||+| .||..|
T Consensus        70 v-~~~V~lv~~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   70 V-RPEVELVPPGTLPRS-EGKAKR   91 (96)
T ss_dssp             S--EEEEEE-TT-S----SSSS-S
T ss_pred             c-eEEEEEECCCCccCC-CCcceE
Confidence            1 234444444689997 678765

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.98  E-value=0.00035  Score=66.60  Aligned_cols=158  Identities=15%  Similarity=0.120  Sum_probs=87.4

Q ss_pred             CCCccEEEeccCCCCHHHHHHHHhhCCCCce-EcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCcee
Q 019921           56 RDSVKKILNGGGGLPSELMKEATNSFPKAKL-ISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVC  134 (334)
Q Consensus        56 ~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~-~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (334)
                      .++|+.+.+.+..-...-.+.+++.+|++++ ...|++||+-.  +.....+...                        .
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i--~i~~~~~~~~------------------------~  319 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFI--GIPLDPEDPG------------------------Y  319 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEE--EEES-CCC--------------------------E
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEE--EEecCCCCCc------------------------e
Confidence            5788877665555555667777788866544 56999999642  2221111100                        0


Q ss_pred             eccccCcceEEEeeC-------------------CCCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC
Q 019921          135 VGKPAPHVELKVCSD-------------------GSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD  195 (334)
Q Consensus       135 ~g~p~~~~~~~i~~~-------------------~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~  195 (334)
                      +-.|-.+ -.+.++.                   +.|+..||++++.+                 +--.|+.||.++...
T Consensus       320 ~l~~~~~-ffEFip~~~~~~~~~~~~~~l~~~ele~G~~YelviTt~~-----------------GLyRY~iGDvVrv~g  381 (528)
T PF03321_consen  320 VLAPDSG-FFEFIPVDEDEQNPSEQPKTLLLHELEVGEEYELVITTNS-----------------GLYRYRIGDVVRVTG  381 (528)
T ss_dssp             EE-TTSS-EEEEEE-STT-------SSSEEGGG--TT-EEEEEEESTT-----------------S-SSEEECEEEEEEE
T ss_pred             EeecCCe-EEEEEeccCCcccccCCCceecHHHhcCCCeEEEEEeccc-----------------ceeeeecCCEEEEee
Confidence            1111111 1122111                   15667888887632                 112499999999754


Q ss_pred             --CC--cEEEeeccCceeeeCceeeChHHHHHHHhcC-----CCcceEEEEEEecCcceeEEEEEEEeccC
Q 019921          196 --GG--NVWLVGRRNGRIKSGGENVYPEEVEAVLLQH-----PGIIGIVVVGIANARLTEMVVACVRLRES  257 (334)
Q Consensus       196 --~G--~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-----~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  257 (334)
                        ++  .+.|+||.+.++.+.|++++-.++++++.+.     -.+.+..+.+.........-+.++++...
T Consensus       382 f~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~  452 (528)
T PF03321_consen  382 FYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE  452 (528)
T ss_dssp             EETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred             ccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence              34  6999999999999999999999999999875     23445555554322233345566666654

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.00  E-value=0.046  Score=52.80  Aligned_cols=60  Identities=10%  Similarity=0.090  Sum_probs=47.4

Q ss_pred             CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCC----CcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG----GNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~----G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .|+.-|++|++.+                 |-=.|+.||..+...-    =.+.|+||.+.++.+.|++++-.+++.++.
T Consensus       393 ~G~~Y~lVvTT~~-----------------GLyRY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~  455 (597)
T PLN02249        393 VGKEYELVITTYA-----------------GLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVE  455 (597)
T ss_pred             CCCeEEEEEEccc-----------------ceeEeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHH
Confidence            5666788887522                 1124899999998542    258999999999999999999999999887


Q ss_pred             c
Q 019921          227 Q  227 (334)
Q Consensus       227 ~  227 (334)
                      +
T Consensus       456 ~  456 (597)
T PLN02249        456 N  456 (597)
T ss_pred             H
Confidence            6

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=96.83  E-value=0.023  Score=54.41  Aligned_cols=61  Identities=10%  Similarity=0.109  Sum_probs=47.2

Q ss_pred             CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC----CCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .|+.-|++|+..+                 +--.|+.||+.+...    .=.+.|++|.+-+..+.|+|++-.++..++.
T Consensus       406 ~G~~YelvvTt~~-----------------GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~  468 (612)
T PLN02620        406 LGQEYELVVTTYA-----------------GLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVK  468 (612)
T ss_pred             CCCeEEEEEEecC-----------------ceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHH
Confidence            5666888887522                 222589999998743    2369999999988899999999999988887


Q ss_pred             cC
Q 019921          227 QH  228 (334)
Q Consensus       227 ~~  228 (334)
                      +.
T Consensus       469 ~a  470 (612)
T PLN02620        469 NA  470 (612)
T ss_pred             HH
Confidence            64

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=95.88  E-value=0.1  Score=50.27  Aligned_cols=152  Identities=16%  Similarity=0.083  Sum_probs=83.5

Q ss_pred             CCCccEEEeccCCCCHHHHHHHHhhCCCCceEc-ccccccccccccccccCCCCCCCCCC--CCCcccCCCCCCCCC---
Q 019921           56 RDSVKKILNGGGGLPSELMKEATNSFPKAKLIS-AYGMTETSSSLTFMTLYDPTLETPGQ--LPQAFGNVTPNSVHQ---  129 (334)
Q Consensus        56 ~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---  129 (334)
                      .+++++|.+.-..-...-+..++..+++.+++. .||+||+-..+-..+..++......-  -..-+.+.+-+.-..   
T Consensus       292 WP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~  371 (606)
T PLN02247        292 WPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMAYFEFLPVDKNNGEVI  371 (606)
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCccCCceeecCCcEEEEEeecCCCccccc
Confidence            467787776544445566677777777777665 99999965432221111111110000  000112221100000   


Q ss_pred             C--Cc------eeeccccCcceEEEe---eCCCCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC---
Q 019921          130 P--QG------VCVGKPAPHVELKVC---SDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD---  195 (334)
Q Consensus       130 ~--~~------~~~g~p~~~~~~~i~---~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~---  195 (334)
                      +  ..      +..+..    +..++   +-..|+.-|++|+..+                 +--.||.||+.+...   
T Consensus       372 ~~~~~~~~~~~~~~~~~----~~~~v~l~evk~G~~YelVvTt~~-----------------GLYRYrlGDvv~V~GF~n  430 (606)
T PLN02247        372 HFVQCNGTDDDDDALKE----DLEIVDLVDVKVGHYYELVVTTFT-----------------GLYRYRVGDILMVTGFYN  430 (606)
T ss_pred             ccccccccccccccccc----cCceecHHHccCCCeEEEEEEecC-----------------ceEEEecCCEEEEeeecC
Confidence            0  00      000000    00122   2225667888887522                 222589999998743   


Q ss_pred             -CCcEEEeeccCceeeeCceeeChHHHHHHHhcC
Q 019921          196 -GGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH  228 (334)
Q Consensus       196 -~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  228 (334)
                       .=.+.|++|.+.+..+.|+|++-.++.+++.+.
T Consensus       431 ~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        431 NAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             CCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence             236999999999999999999999999888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	334
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-14
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		8e-13
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		2e-12
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-12
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		4e-12
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		5e-12
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		6e-12
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-11
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-10
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-10
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-10
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-10
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-10
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-09
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-09
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-09
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-09
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		8e-09
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-08
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-06
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		7e-06
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		7e-06
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-05
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		2e-05
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-05
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		4e-04
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		4e-04
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		8e-04

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 101/266 (37%), Gaps = 18/266 (6%)
Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           L VGA  + +PKFE  S L  +E++ V+    VP +M  +A    + K      S++ I 
Sbjct: 246 LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK--HDLSSLRMIK 303
Query: 64  NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DPTLETPGQLPQAFGN 121
           +GG  L  EL       FP+A+L   YGMTE    L     +  +P    PG       N
Sbjct: 304 SGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRN 363
Query: 122 VTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG 181
                V    G  + +  P              G I  RG  +M  Y +   A       
Sbjct: 364 AEMKIVDPETGASLPRNQP--------------GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 182 EVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXAN 241
           E WL             +++V R    IK  G  V P E+EA+L+ HP           +
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKD 469
Query: 242 ARLTEMVVACVRLRESWQWSESNCDQ 267
               E+ VA V   E  Q +E    Q
Sbjct: 470 EDAGEVPVAFVVKSEKSQATEDEIKQ 495

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 127/334 (38%), Gaps = 54/334 (16%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A L +   +V + +F    AL+ V+Q  VTSL   P  +  LA       +    DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
            +   G  +P  +++      P  K ++AYG TE  +SL        T   PG     ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNAYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
            +  G V     +  +G          EL V +  S+ VG                +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
           P  +  ++   W              V ++GR +  I SGGEN++P E+E VL   P   
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
                  A+ R  + V ACV  R     S    D                  CR   L  
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
           FK P R F+L     P  +  K+ R ++ ++V S
Sbjct: 473 FKRPKRYFIL--DQLPKNALNKVLRRQLVQQVSS 504

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 126/334 (37%), Gaps = 54/334 (16%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A L +   +V I +F    AL+ V+Q  VTSL   P  +  LA       +    DS++
Sbjct: 216 VAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
            +   G  +P  +++      P  K ++ YG TE  +SL        T   PG     ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
            +  G V     +  +G          EL V +  S+ VG                +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
           P  +  ++   W              V ++GR +  I SGGEN++P E+E VL   P   
Sbjct: 369 PEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
                  A+ R  + V ACV  R     S    D                  CR   L  
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
           FK P R F+L     P  +  K+ R ++ ++V S
Sbjct: 473 FKRPKRYFIL--DQLPKNALNKVLRRQLVQQVSS 504

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 127/334 (38%), Gaps = 54/334 (16%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A L +   +V + +F    AL+ V+Q  VTSL   P  +  LA       +    DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
            +   G  +P  +++      P  K ++ YG TE  +SL        T   PG     ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNGYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
            +  G V     +  +G          EL V +  S+ VG                +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
           P  +  ++   W              V ++GR +  I SGGEN++P E+E VL   P   
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
                  A+ R  + V ACV  R     S    D                  CR   L  
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
           FK P R F+L +   P  +  K+ R ++ ++V S
Sbjct: 473 FKRPKRYFILDQ--LPKNALNKVLRRQLVQQVSS 504

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 126/334 (37%), Gaps = 54/334 (16%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A L +   +V + +F    AL+ V+Q  VTSL   P  +  LA       +    DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
            +   G  +P  +++      P  K ++ YG TE  +SL        T   PG     ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
            +  G V     +  +G          EL V +  S+ VG                +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
           P  +  ++   W              V ++GR +  I SGGEN++P E+E VL   P   
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
                  A+ R  + V ACV  R     S    D                  CR   L  
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
           FK P R F+L     P  +  K+ R ++ ++V S
Sbjct: 473 FKRPKRYFIL--DQLPKNALNKVLRRQLVQQVSS 504

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 118/328 (35%), Gaps = 36/328 (10%)
Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           L VGA  + +PKFE    LE +++  VT    VP I+  +A     +K      S++ + 
Sbjct: 293 LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY--DLSSIRVVK 350
Query: 64  NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DPTLETPGQLPQAFGN 121
           +G   L  EL       FP AKL   YGMTE    L     +  +P     G       N
Sbjct: 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRN 410
Query: 122 VTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG 181
                V    G  + +  P              G I  RG  +M  Y +   A       
Sbjct: 411 AEMKIVDPDTGDSLSRNQP--------------GEICIRGHQIMKGYLNNPAATAETIDK 456
Query: 182 EVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXAN 241
           + WL             +++V R    IK  G  V P E+EA+L+ HP            
Sbjct: 457 DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKE 516
Query: 242 ARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVL 301
               E+ VA V   +  + SE +  Q              +Q    K +         V 
Sbjct: 517 EAAGEVPVAFVVKSKDSELSEDDVKQ-----------FVSKQVVFYKRINK-------VF 558
Query: 302 WRKPFPLTSTGKIRRDEVRREVMSHLKS 329
           + +  P   +GKI R ++R ++ + L S
Sbjct: 559 FTESIPKAPSGKILRKDLRAKLANGLGS 586

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 125/333 (37%), Gaps = 52/333 (15%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A L +   +V + +F    AL+ V+Q  VTSL   P  +  LA       +    DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
            +   G   P  +++      P  K ++ YG TE  +SL        T   PG     ++
Sbjct: 276 HVTFAGATXPDAVLETVHQHLPGEK-VNIYGTTEAXNSLYXRQPKTGTEXAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
            +  G V     +  +G          EL V +  S+ VG                +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
           P  +  ++   W              V ++GR +  I SGGEN++P E+E VL   P   
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
                  A+ R  + V ACV  R     S    D                  CR   L  
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
           FK P+ + +  +  P  +  K+ R ++ ++V S
Sbjct: 473 FKRPKRYFILDQ-LPKNALNKVLRRQLVQQVSS 504

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 126/334 (37%), Gaps = 54/334 (16%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A L +   +V + +F    AL+ V+Q  VTSL   P  +  LA       +    DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG-----QL 115
            +   G  +P  +++      P  K ++ YG TE  +SL        T   PG     ++
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 116 PQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAK 175
            +  G V     +  +G          EL V +  S+ VG                +L +
Sbjct: 335 VRIGGGVDEIVANGEEG----------ELIVAASDSAFVG----------------YLNQ 368
Query: 176 PSVSTGEV---WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXX 232
           P  +  ++   W              V ++GR    I SGGEN++P E+E VL   P   
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 233 XXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTG 292
                  A+ R  + V ACV  R     S    D                  CR   L  
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALD----------------TFCRSSELAD 472
Query: 293 FKAP-RLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
           FK P R F+L +   P  +  K+ R ++ ++V S
Sbjct: 473 FKRPKRYFILDQ--LPKNALNKVLRRQLVQQVSS 504

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 31/268 (11%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L+ G   V + +FE +  L +++ + + S + VP + +  A    + K      ++ 
Sbjct: 258 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLH 315
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I +GG  L  E+ +     F    +   YG+TET+S++                     
Sbjct: 316 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-------------------- 355
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
            +TP    +P    VGK  P  E KV       + G +  G +  RG  +M  Y +   A
Sbjct: 356 -ITPEGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 412
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
             ++   + WL            + ++V R    IK  G  V P E+E++LLQHP     
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 472
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
                 +    E+  A V L      +E
Sbjct: 473 GVAGLPDDDAGELPAAVVVLEHGKTMTE 500

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 31/268 (11%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L+ G   V + +FE +  L +++ + + S + VP + +  A    + K      ++ 
Sbjct: 253 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLH 310
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I +GG  L  E+ +     F    +   YG+TET+S++                     
Sbjct: 311 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-------------------- 350
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
            +TP    +P    VGK  P  E KV       + G +  G +  RG  +M  Y +   A
Sbjct: 351 -ITPEGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
             ++   + WL            + ++V R    IK  G  V P E+E++LLQHP     
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 467
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
                 +    E+  A V L      +E
Sbjct: 468 GVAGLPDDDAGELPAAVVVLEHGKTMTE 495

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 31/268 (11%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L+ G   V + +FE +  L +++ + + S + VP + +  A    + K      ++ 
Sbjct: 253 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLH 310
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I +GG  L  E+ +     F    +   YG+TET+S++                     
Sbjct: 311 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-------------------- 350
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
            +TP    +P    VGK  P  E KV       + G +  G +  RG  +M  Y +   A
Sbjct: 351 -ITPEGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
             ++   + WL            + ++V R    IK  G  V P E+E++LLQHP     
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 467
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
                 +    E+  A V L      +E
Sbjct: 468 GVAGLPDDDAGELPAAVVVLEHGKTMTE 495

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 31/268 (11%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L+ G   V + +FE +  L +++ + + S + VP + + LA    + K      ++ 
Sbjct: 258 LGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKY--DLSNLH 315
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I +GG  L  E+ +     F    +   YG+TET+S++                     
Sbjct: 316 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-------------------- 355
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
            +TP    +P    VGK  P  E KV       + G +  G +  RG  +M  Y +   A
Sbjct: 356 -ITPKGDDKPG--AVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
             ++   + WL            + ++V R    IK  G  V P E+E++LLQHP     
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDA 472
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
                 +    E+  A V L      +E
Sbjct: 473 GVAGLPDDDAGELPAAVVVLEHGKTMTE 500

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 102/268 (38%), Gaps = 30/268 (11%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L  G   V + +FE +  L +++ + + S + VP + +  A    V K      ++ 
Sbjct: 287 LGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKY--DLSNLH 344
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I +GG  L  E+ +     F    +   YG+TET+S++                     
Sbjct: 345 EIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAII-------------------- 384
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
            +TP       G C GK  P    K+       + G +  G +  +G  +M  Y +   A
Sbjct: 385 -ITPRGRDDKPGAC-GKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEA 442
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXX 234
             ++   + WL              ++V R    IK  G  V P E+E++LLQHP     
Sbjct: 443 TSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDA 502
Query: 235 XXXXXANARLTEMVVACVRLRESWQWSE 262
                 +    E+  A V L E    +E
Sbjct: 503 GVAGIPDPDAGELPAAVVVLEEGKTMTE 530

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L+ G   V + KF+ ++ L+ ++ +  TS+I VP + A L     + K      ++ 
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKY--DLSNLV 312
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I +GG  L  E+ +     F    +   YG+TET+S++                     
Sbjct: 313 EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-------------------- 352
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
            +TP    +P     GK  P  + KV       S G +  G +  +G  +M  Y +   A
Sbjct: 353 -ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEA 409
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
              +   E WL            + ++V R    IK  G  V P E+E+VLLQHP
Sbjct: 410 TKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHP 464

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L+ G   V + KF+ ++ L+ ++ +  TS+I VP + A L     + K      ++ 
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKY--DLSNLV 312
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I +GG  L  E+ +     F    +   YG+TET+S++                     
Sbjct: 313 EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-------------------- 352
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
            +TP    +P     GK  P  + KV       S G +  G +  +G  +M  Y +   A
Sbjct: 353 -ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEA 409
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
              +   E WL            + ++V R    IK  G  V P E+E+VLLQHP
Sbjct: 410 TKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHP 464

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 127/323 (39%), Gaps = 74/323 (22%)
Query: 12  FIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPS 71
            + KF ++  L  ++   +T +  VP  +  L     +++      +++KIL GG  L +
Sbjct: 234 IVDKFNAEQILTMIKNERITHISLVPQTLNWL-----MQQGLHEPYNLQKILLGGAKLSA 288
Query: 72  ELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVH-QP 130
            +++ A        + +++GMTET S                     F   TP  +H +P
Sbjct: 289 TMIETALQY--NLPIYNSFGMTETCSQ--------------------FLTATPEMLHARP 326
Query: 131 QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV---WLXX 187
               VG P+ +V++K+ +      G ++ +GA+VM  Y       P+  TG     +   
Sbjct: 327 D--TVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYL-----YPTDLTGTFENGYFNT 379
Query: 188 XXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEM 247
                      V +  RR   I SGGEN+YP ++E V  Q P                  
Sbjct: 380 GDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISD-------------- 425
Query: 248 VVACV--------RLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLF 299
              CV        ++ + +  SES+  +                    K+L  +K P+ F
Sbjct: 426 -AVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYL------------SKHLAKYKVPKHF 472
Query: 300 VLWRKPFPLTSTGKIRRDEVRRE 322
                  P TSTGK++R+++ RE
Sbjct: 473 E-KVDTLPYTSTGKLQRNKLYRE 494

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L+ G   V + KF+ ++ L+ ++ +  T++I VP + A L     + K      ++ 
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKY--DLSNLV 312
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I +GG  L  E+ +     F    +   YG+TET+S++                     
Sbjct: 313 EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-------------------- 352
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVC------SDGSSHVGRILTRGAHVMLRYWDQFLA 174
            +TP    +P     GK  P  + KV       S G +  G +  +G  +M  Y +   A
Sbjct: 353 -ITPEGDDKPG--ASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEA 409
Query: 175 KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP 229
              +   E WL            + ++V R    IK  G  V P E+E+VLLQHP
Sbjct: 410 TKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHP 464

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 131/339 (38%), Gaps = 66/339 (19%)
Query: 6   VGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 62
           +  C VF+    +FE+K+ LE   ++ VT+    P I      LI+   +     ++K  
Sbjct: 290 IAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTI---YRFLIKEDLSHYNFSTLKYA 346
Query: 63  LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
           +  G  L  E+       F   KL+  +G TET  ++      +P    PG         
Sbjct: 347 VVAGEPLNPEVFNRFL-EFTGIKLMEGFGQTETVVTIATFPWMEPK---PGS-------- 394
Query: 123 TPNSVHQPQGVCVGKPAP--HVEL--------KVCSDGSSHVGRILTRGAHVMLRYWDQF 172
                       +GKP P   +EL        +V  +G   +  +  +   + + Y    
Sbjct: 395 ------------IGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHY---- 438
Query: 173 LAKPSVSTGEVWLXXXXXXXXXXXXN----VWLVGRRNGRIKSGGENVYPEEVEAVLLQH 228
             K    T E W             +    +W VGR +  IK+ G  V P EVE+ L+QH
Sbjct: 439 -GKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQH 497
Query: 229 PXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREK 288
           P           +    +++ A + L + +  S+S  ++              + H   K
Sbjct: 498 PAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNE-------------LQDHV--K 542
Query: 289 NLTG-FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSH 326
           N+T  +K PR+ + +    P T +GKIRR E+R +  S 
Sbjct: 543 NVTAPYKYPRI-IEFVPELPKTISGKIRRVEIRDKDQSQ 580

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 121/323 (37%), Gaps = 43/323 (13%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           + +L  G C V  P  E  +    +++H V     VP+     A ++ ++K  + +D ++
Sbjct: 253 LGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPS-----AVIMWLEKAAQYKDQIQ 307
Query: 61  --KILN-GGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
             K+L  GG   P  L ++        KL   +GM E   + T +   D  + T    P 
Sbjct: 308 SLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPI 366
Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPS 177
           +  +       Q + V  G+                +G + TRG +    Y+        
Sbjct: 367 SSDDEIKIVDEQYREVPEGE----------------IGMLATRGPYTFCGYYQSPEHNSQ 410
Query: 178 VSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXX 237
           V   + +             N+ +VGR   +I  GGE +  EE+E ++L HP        
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHP-------- 462
Query: 238 XXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPR 297
                   E++ A +      Q+ E +C                R+H  E  +  +K P 
Sbjct: 463 --------EVMHAALVAIVDEQFGEKSC-AFIVSRNPELKAVVLRRHLMELGIAQYKLPD 513
Query: 298 LFVLWRKPFPLTSTGKIRRDEVR 320
              L  +  PLT+ GK+ + ++R
Sbjct: 514 QIKLI-ESLPLTAVGKVDKKQLR 535

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 97/252 (38%), Gaps = 43/252 (17%)
Query: 15  KFESKSALEAVEQHCVTSLITVPAIMADLA-TLIRVKKTWKGRDSVKKILNGGGGLP--- 70
           +F ++ A   +     T L  VP +   +A TL    +  K     + +++G   LP   
Sbjct: 230 RFSTEGAARELNDGA-TMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHD 288
Query: 71  SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 130
            E +  AT      ++I  YGMTET                         N +  +  +P
Sbjct: 289 HERIAAATGR----RVIERYGMTET-----------------------LMNTSVRADGEP 321
Query: 131 QGVCVGKPAPHVELKVCS---------DGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTG 181
           +   VG P P VEL++           DG S VG I  RG ++   Y ++  A  +  T 
Sbjct: 322 RAGTVGVPLPGVELRLVEEDGTPIAALDGES-VGEIQVRGPNLFTEYLNRPDATAAAFTE 380
Query: 182 EVWLXXXXXXXXXXXXNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXA 240
           + +              V +VGR+    IKSGG  +   E+E  LL+HP           
Sbjct: 381 DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEP 440
Query: 241 NARLTEMVVACV 252
           +  L E +VA +
Sbjct: 441 DPDLGERIVAWI 452

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 87/239 (36%), Gaps = 45/239 (18%)
Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           + +   G   V   KF+   A   +E H VT       +MA+ A ++           + 
Sbjct: 220 LTLQQAGGASVIAAKFDPAQAARDIEAHKVT-------VMAEFAPMLGNILDQAAPAQLA 272
Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            +    G    E ++    + P A   + +G +ETS   TF    D              
Sbjct: 273 SLRAVTGLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-------------- 318
Query: 121 NVTPNSVHQP---QGVCV----GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFL 173
              P S  +P   + V V     +P P  E          VG I+ RG  V   YW+   
Sbjct: 319 --RPKSAGRPLFWRTVAVVDAEDRPLPPGE----------VGEIVLRGPTVFKGYWNNAA 366
Query: 174 A-KPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGR--IKSGGENVYPEEVEAVLLQHP 229
           A + +   G  W              ++  GR   +  IK+GGENVYP EVE  L QHP
Sbjct: 367 ATQHAFRNG--WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHP 423

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 114/317 (35%), Gaps = 40/317 (12%)
Query: 4   LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKIL 63
           L      +F+PKF+    L+   +  V  L  VP     L    R+ K   G    +  +
Sbjct: 219 LFARGSXIFLPKFDPDKILDLXARATV--LXGVPTFYTRLLQSPRLTKETTGH--XRLFI 274
Query: 64  NGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVT 123
           +G   L ++  +E +     A ++  YG TET+ + +    YD       ++P A G   
Sbjct: 275 SGSAPLLADTHREWSAKTGHA-VLERYGXTETNXNTS--NPYDGD-----RVPGAVGPAL 326
Query: 124 PNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEV 183
           P    +      GK  P             +G I  +G +V   YW       S    + 
Sbjct: 327 PGVSARVTDPETGKELPR----------GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDG 376
Query: 184 WLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANAR 243
           +              V ++GR    + +GG NVYP+E+E+ +   P           +A 
Sbjct: 377 FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHAD 436
Query: 244 LTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWR 303
             E V A V   +     E+                    H  +  L  FK P+  V++ 
Sbjct: 437 FGEGVTAVVVRDKGATIDEAQV-----------------LHGLDGQLAKFKXPKK-VIFV 478
Query: 304 KPFPLTSTGKIRRDEVR 320
              P  + GK++++ +R
Sbjct: 479 DDLPRNTXGKVQKNVLR 495

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 83/226 (36%), Gaps = 31/226 (13%)
Query: 115 LPQAFGN----VTPNSVHQPQGVCV---GKP-APHVELKVCSDGSSHV-----GRILTRG 161
           L Q FG     V    +  P+ + V   GKP +P+ E +V  D    V     G +LTRG
Sbjct: 326 LQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRG 385
Query: 162 AHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEV 221
            + +  Y+       +  T + +              + + GR   +I  GGE V  EEV
Sbjct: 386 PYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445
Query: 222 EAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXX 281
           E  LL HP           +  L E     +  R+                         
Sbjct: 446 ENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDE-----------------APKAAEL 488
Query: 282 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
           +   RE+ L  +K P   V + + FP T  GK+ +  +R  +   L
Sbjct: 489 KAFLRERGLAAYKIPDR-VEFVESFPQTGVGKVSKKALREAISEKL 533

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 81/226 (35%), Gaps = 31/226 (13%)
Query: 115 LPQAFGN----VTPNSVHQPQGVCV---GKP-APHVELKVCSDGSSHV-----GRILTRG 161
           L Q FG     V    +  P+ + V   GKP +P+ E +V  D    V     G +LTRG
Sbjct: 326 LQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRG 385
Query: 162 AHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEV 221
            + +  Y+       +  T + +              + + GR   +I  GGE V  EEV
Sbjct: 386 PYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445
Query: 222 EAVLLQHPXXXXXXXXXXANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXX 281
           E  LL HP           +  L E     +  R+                         
Sbjct: 446 ENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-----------------APKAAEL 488
Query: 282 RQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
           +   RE+ L  +K P   V + + FP T  GK+ +  +R  +   L
Sbjct: 489 KAFLRERGLAAYKIPDR-VEFVESFPQTGVGKVSKKALREAISEKL 533

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 29/186 (15%)
Query: 136 GKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXXXXXXX 195
           G P P  E          VGR++TRG +    Y+       S      +           
Sbjct: 374 GNPLPQGE----------VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP 423
Query: 196 XXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVACVRLR 255
              + + GR   +I  GGE +  EE+E +LL+HP           +  + E   A + ++
Sbjct: 424 EGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK 483
Query: 256 ESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR 315
           E  +                      R+  RE+ +  FK P   V      PLT+ GK+ 
Sbjct: 484 EPLR------------------AVQVRRFLREQGIAEFKLPDR-VECVDSLPLTAVGKVD 524
Query: 316 RDEVRR 321
           + ++R+
Sbjct: 525 KKQLRQ 530

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 112/310 (36%), Gaps = 40/310 (12%)
Query: 11  VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLP 70
           +F+P F+    L+ + +  V  L+ VP     L    R+     G   ++  ++G   L 
Sbjct: 226 IFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTGH--MRLFISGSAPLL 281
Query: 71  SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 130
           ++  +E +     A L   YGMTET+ + +    YD       ++P A G   P    + 
Sbjct: 282 ADTHREWSAXTGHAVL-ERYGMTETNMNTS--NPYDGD-----RVPGAVGPALPGVSAR- 332
Query: 131 QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXX 190
               V  P    EL         +G I   G +V   YW       S    + +      
Sbjct: 333 ----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDL 383
Query: 191 XXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVA 250
                   V ++GR    + +GG NVYP E+E+ +   P           +A   E V A
Sbjct: 384 GXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443
Query: 251 CVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLFVLWRKPFPLTS 310
            V L   +  SE+                    H  +  L  F  P   V++    P  +
Sbjct: 444 FVVLXREFAPSEAQV-----------------LHGLDGQLAXFXMPXX-VIFVDDLPRNT 485
Query: 311 TGKIRRDEVR 320
            G ++ + +R
Sbjct: 486 MGAVQXNVLR 495

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 126/323 (39%), Gaps = 51/323 (15%)
Query: 5   MVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDS--VKKI 62
           M G   + +P+F++      + +  V     VPAI+      +R    +   D+   +  
Sbjct: 234 MRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL----NFMRQVPEFAELDAPDFRYF 289
Query: 63  LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA--FG 120
           + GG  +P  L+K    +    +++  Y +TE+    T + L +  L   G   +A  F 
Sbjct: 290 ITGGAPMPEALIK--IYAAKNIEVVQGYALTESCGGGTLL-LSEDALRKAGSAGRATMFT 346
Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLA-KPSVS 179
           +V   +V    GV       H E           G ++ +   ++  YW++  A + +  
Sbjct: 347 DV---AVRGDDGVI----REHGE-----------GEVVIKSDILLKEYWNRPEATRDAFD 388
Query: 180 TGEVWLXXXXXXXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXX 239
            G  W              +++  R    I SGGENVYP E+E+V++  P          
Sbjct: 389 NG--WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGL 446
Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQXXXXXXXXXXXXXXRQHCREKNLTGFKAPRLF 299
            + +  E+  A V + +  + SE                    ++C  + L  +K P+  
Sbjct: 447 PDEKWGEIAAAIV-VADQNEVSEQQI----------------VEYCGTR-LARYKLPKK- 487
Query: 300 VLWRKPFPLTSTGKIRRDEVRRE 322
           V++ +  P   TGKI +  +R +
Sbjct: 488 VIFAEAIPRNPTGKILKTVLREQ 510

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 22/252 (8%)
Query: 11  VFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLP 70
           +F+P F+    L+ + +  V  L+ VP     L    R+     G   ++  ++G   L 
Sbjct: 226 IFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXETTGH--MRLFISGSAPLL 281
Query: 71  SELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQP 130
           ++  +E +     A L   YGMTET+ + +    YD       ++P A G   P    + 
Sbjct: 282 ADTHREWSAXTGHAVL-ERYGMTETNMNTS--NPYDGD-----RVPGAVGPALPGVSAR- 332
Query: 131 QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLXXXXX 190
               V  P    EL         +G I   G +V   YW       S    + +      
Sbjct: 333 ----VTDPETGXELP-----RGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDL 383
Query: 191 XXXXXXXNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPXXXXXXXXXXANARLTEMVVA 250
                   V ++GR    + +GG NVYP E+E+ +   P           +A   E V A
Sbjct: 384 GXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443
Query: 251 CVRLRESWQWSE 262
            V L   +  SE
Sbjct: 444 FVVLXREFAPSE 455

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	6e-67
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-66
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-65
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-64
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-64
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-62
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-61
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-59
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	3e-56
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	3e-55
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	4e-54
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	8e-54
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	7e-53
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-49
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-46
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	8e-40
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	5e-27
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-24
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-22
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-21
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-17
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-17
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-16
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-14
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-13
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	4e-12
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-11
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	9e-06
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	2e-05
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	2e-05
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	5e-04

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  217 bits (555), Expect = 6e-67
 Identities = 78/326 (23%), Positives = 134/326 (41%), Gaps = 50/326 (15%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  ++ G     + KF ++  L  ++   +T +  VP  +  L      +       +++
Sbjct: 223 LRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY-----NLQ 277

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           KIL GG  L + +++ A        + +++GMTET S     T                 
Sbjct: 278 KILLGGAKLSATMIETALQYN--LPIYNSFGMTETCSQFLTATPEM-------------L 322

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST 180
           +  P++V        G P+ +V++K+ +      G ++ +GA+VM  Y        +   
Sbjct: 323 HARPDTV--------GMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTFEN 374

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
           G  + +TGDI  ID  G V +  RR   I SGGEN+YP ++E V  Q PGI   V VG  
Sbjct: 375 G--YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHP 432

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
           +    ++                            +S   L  +  +  L  +K P+ F 
Sbjct: 433 DDTWGQVPKLYFVSESD------------------ISKAQLIAYLSKH-LAKYKVPKHFE 473

Query: 301 LWRKPFPLTSTGKIRRDEVRREVMSH 326
                 P TSTGK++R+++ RE   H
Sbjct: 474 K-VDTLPYTSTGKLQRNKLYREGHHH 498

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  215 bits (551), Expect = 2e-66
 Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 62/338 (18%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A L +   +V + +F    AL+ V+Q  VTSL   P  +  LA       +    DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            +   G  +P  +++      P  + ++ YG TE  +SL       P   T         
Sbjct: 276 HVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYMR---QPKTGT--------- 322

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH--------VGRILTRG-AHVMLRYWDQ 171
                            P    E+++   G            G ++        + Y + 
Sbjct: 323 --------------EMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLN- 367

Query: 172 FLAKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
              +P  +T E     W  T D+      G V ++GR +  I SGGEN++P E+E VL  
Sbjct: 368 ---QP-QATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423

Query: 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 287
            PG+  +VV+G+A+ R  + V ACV  R                    LS++ L   CR 
Sbjct: 424 APGVTEVVVIGLADQRWGQSVTACVVPRLGET----------------LSADALDTFCRS 467

Query: 288 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMS 325
             L  FK P+ + +     P  +  K+ R ++ ++V S
Sbjct: 468 SELADFKRPKRYFI-LDQLPKNALNKVLRRQLVQQVSS 504

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  214 bits (547), Expect = 2e-65
 Identities = 75/339 (22%), Positives = 121/339 (35%), Gaps = 57/339 (16%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           + +L  G   V  P      A   +E+  VT    VP +              +  D  S
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAAS----SRRDDLSS 299

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++ +  GG    +E  +     F    L   +GM E   + T +   D   E        
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTRL---DDPEE-------- 347

Query: 119 FGNVTPNSVHQPQGVCVGKP-APHVELKV-------CSDGSSHVGRILTRGAHVMLRYWD 170
              +  N+         GKP +P+ E +V          G    G +LTRG + +  Y+ 
Sbjct: 348 ---IIVNTQ--------GKPMSPYDESRVWDDHDRDVKPG--ETGHLLTRGPYTIRGYYK 394

Query: 171 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230
                 +  T + +  TGDI  +   G + + GR   +I  GGE V  EEVE  LL HP 
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454

Query: 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290
           +    +V + +  L E     +  R+                     +  L+   RE+ L
Sbjct: 455 VHDAAMVSMPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGL 497

Query: 291 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 329
             +K P       + FP T  GK+ +  +R  +   L +
Sbjct: 498 AAYKIPDRVEF-VESFPQTGVGKVSKKALREAISEKLLA 535

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  213 bits (545), Expect = 2e-64
 Identities = 74/339 (21%), Positives = 127/339 (37%), Gaps = 56/339 (16%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           + + + G   V      +      +E+H V     VP  ++    L  + +        S
Sbjct: 246 LGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLW--LQALIEGESRAQLAS 303

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           +K +  GG  L + L           +L   +GM E   + T   L D   +        
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIG-CQLQQVFGMAEGLVNYTR--LDDSAEKIIH----- 355

Query: 119 FGNVTPNSVHQPQGVCVGKP-APHVELKV-------CSDGSSHVGRILTRGAHVMLRYWD 170
                            G P  P  E+ V          G   VGR++TRG +    Y+ 
Sbjct: 356 ---------------TQGYPMCPDDEVWVADAEGNPLPQG--EVGRLMTRGPYTFRGYYK 398

Query: 171 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230
                 S      +  +GD+ SID  G + + GR   +I  GGE +  EE+E +LL+HP 
Sbjct: 399 SPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPA 458

Query: 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290
           +I   +V + +  + E   A + ++E                   L +  +R+  RE+ +
Sbjct: 459 VIYAALVSMEDELMGEKSCAYLVVKEP------------------LRAVQVRRFLREQGI 500

Query: 291 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 329
             FK P   V      PLT+ GK+ + ++R+ + S   +
Sbjct: 501 AEFKLPDR-VECVDSLPLTAVGKVDKKQLRQWLASRASA 538

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  210 bits (537), Expect = 4e-64
 Identities = 71/332 (21%), Positives = 134/332 (40%), Gaps = 61/332 (18%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +   M G   + +P+F++      + +  V     VPAI+  +  +    +     D   
Sbjct: 230 IFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE----LDAPD 285

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
            +  + GG  +P  L+K         +++  Y +TE+    T +   D  L   G     
Sbjct: 286 FRYFITGGAPMPEALIKIYA--AKNIEVVQGYALTESCGGGTLLLSEDA-LRKAGS---- 338

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV----GRILTRGAHVMLRYWDQFLA 174
                            G+     ++ V  D         G ++ +   ++  YW+    
Sbjct: 339 ----------------AGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWN---- 378

Query: 175 KPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230
           +P  +T +     W  TGDIG IDD G +++  R    I SGGENVYP E+E+V++  PG
Sbjct: 379 RP-EATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPG 437

Query: 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290
           +  + V+G+ + +  E+  A V   ++                  +S + + ++C  + L
Sbjct: 438 VSEVAVIGLPDEKWGEIAAAIVVADQN-----------------EVSEQQIVEYCGTR-L 479

Query: 291 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
             +K P+  +   +  P   TGKI +  +R +
Sbjct: 480 ARYKLPKKVIF-AEAIPRNPTGKILKTVLREQ 510

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  206 bits (527), Expect = 2e-62
 Identities = 72/339 (21%), Positives = 128/339 (37%), Gaps = 57/339 (16%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           + +L  G C V  P  E  +    +++H V     VP+ +                   S
Sbjct: 253 LGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA----QYKDQIQS 308

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           +K +  GG   P  L ++        KL   +GM E   + T +   D + E        
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEGLVNYTRL---DDSDE-------- 356

Query: 119 FGNVTPNSVHQPQGVCVGKP-APHVELKV-------CSDGSSHVGRILTRGAHVMLRYWD 170
                  +         G+P +   E+K+         +G   +G + TRG +    Y+ 
Sbjct: 357 ---QIFTTQ--------GRPISSDDEIKIVDEQYREVPEG--EIGMLATRGPYTFCGYYQ 403

Query: 171 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230
                  V   + +  +GD+      GN+ +VGR   +I  GGE +  EE+E ++L HP 
Sbjct: 404 SPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPE 463

Query: 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290
           ++   +V I + +  E   A +  R                    L + VLR+H  E  +
Sbjct: 464 VMHAALVAIVDEQFGEKSCAFIVSRNP-----------------ELKAVVLRRHLMELGI 506

Query: 291 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 329
             +K P   +   +  PLT+ GK+ + ++R  + +   S
Sbjct: 507 AQYKLPD-QIKLIESLPLTAVGKVDKKQLRSILNTSTTS 544

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  203 bits (518), Expect = 2e-61
 Identities = 74/335 (22%), Positives = 120/335 (35%), Gaps = 69/335 (20%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           + +   G   V   KF+   A   +E H VT +     ++ ++                S
Sbjct: 220 LTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAP------AQLAS 273

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++ +         E  +      P A   + +G +ETS   TF    D            
Sbjct: 274 LRAVTGLDTPETIERFEAT---CPNATFWATFGQSETSGLSTFAPYRD------------ 318

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVC-SDGSS----HVGRILTRGAHVMLRYWDQFL 173
                P S         G+P     + V  ++        VG I+ RG  V   YW+   
Sbjct: 319 ----RPKSA--------GRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWN--- 363

Query: 174 AKPSVSTGEV----WLDTGDIGSIDDGGNVWLVGRRNGR--IKSGGENVYPEEVEAVLLQ 227
                +T       W  TGD+G  D  G ++  GR   +  IK+GGENVYP EVE  L Q
Sbjct: 364 -NA-AATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQ 421

Query: 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 287
           HP I   VV+G+ + + +E + A    +                    ++++ L +    
Sbjct: 422 HPAIADAVVIGVPDPQWSEAIKAVCVCKPGES----------------IAADALAEFVAS 465

Query: 288 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
             +  +K P+  V   +  P  + G I R  V+  
Sbjct: 466 L-IARYKKPKHVVF-VEALPKDAKGAIDRAAVKTA 498

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  197 bits (503), Expect = 3e-59
 Identities = 72/335 (21%), Positives = 125/335 (37%), Gaps = 66/335 (19%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
              L      +F+PKF+    L+ + +   T L+ VP     L    R            
Sbjct: 216 NVTLFARGSMIFLPKFDPDKILDLMAR--ATVLMGVPTFYTRLLQSPR----LTKETTGH 269

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++  ++G   L ++  +E +       ++  YGMTET+ + T        +  PG     
Sbjct: 270 MRLFISGSAPLLADTHREWSAKTG-HAVLERYGMTETNMN-TSNPYDGDRV--PG----- 320

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSH------VGRILTRGAHVMLRYWDQF 172
                           VG   P V  +V    +        +G I  +G +V   YW   
Sbjct: 321 ---------------AVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWR-- 363

Query: 173 LAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
              P   T        +  TGD+G ID+ G V ++GR    + +GG NVYP+E+E+ +  
Sbjct: 364 --MPE-KTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA 420

Query: 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 287
            PG++   V+G+ +A   E V A V   +                   +    +      
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAVVVRDKGAT----------------IDEAQVLHGLDG 464

Query: 288 KNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
           + L  FK P+  +      P  + GK++++ +R  
Sbjct: 465 Q-LAKFKMPKKVIF-VDDLPRNTMGKVQKNVLRET 497

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  189 bits (482), Expect = 3e-56
 Identities = 74/337 (21%), Positives = 120/337 (35%), Gaps = 62/337 (18%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRV-KKTWKGRDSV 59
           +  L  G     + +F ++ A   +     T L  VP +   +A  +    +  K     
Sbjct: 216 LGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHRIAETLPADPELAKALAGA 274

Query: 60  KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           + +++G   LP    +    +    ++I  YGMTET  + +     D             
Sbjct: 275 RLLVSGSAALPVHDHERIAAATG-RRVIERYGMTETLMNTSV--RAD------------- 318

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSD--------GSSHVGRILTRGAHVMLRYWDQ 171
           G     +V        G P P VEL++  +            VG I  RG ++   Y + 
Sbjct: 319 GEPRAGTV--------GVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLN- 369

Query: 172 FLAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGR-IKSGGENVYPEEVEAVL 225
              +P   T        +  TGD+   D  G V +VGR+    IKSGG  +   E+E  L
Sbjct: 370 ---RPDA-TAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENAL 425

Query: 226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHC 285
           L+HP +    V G  +  L E +VA +   +                    +   L  H 
Sbjct: 426 LEHPEVREAAVTGEPDPDLGERIVAWIVPAD---------------PAAPPALGTLADHV 470

Query: 286 REKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
             + L   K PR+        P    GKI +  + R+
Sbjct: 471 AAR-LAPHKRPRVVRYLDA-VPRNDMGKIMKRALNRD 505

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  187 bits (478), Expect = 3e-55
 Identities = 80/342 (23%), Positives = 138/342 (40%), Gaps = 52/342 (15%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +  L+ G   V + +FE +  L +++ + + S + VP + +  A    + K     D  +
Sbjct: 253 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK----YDLSN 308

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           + +I +GG  L  E+ +     F    +   YG+TET+S++                   
Sbjct: 309 LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI---------------TP 353

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQF 172
            G+  P +V        GK  P  E KV         G +  G +  RG  +M  Y +  
Sbjct: 354 EGDDKPGAV--------GKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNP 405

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A  ++   + WL +GDI   D+  + ++V R    IK  G  V P E+E++LLQHP I 
Sbjct: 406 EATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIF 465

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              V G+ +    E+  A V L      +E                + +  +   + +T 
Sbjct: 466 DAGVAGLPDDDAGELPAAVVVLEHGKTMTE----------------KEIVDYVASQ-VTT 508

Query: 293 FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHLKSLPSNL 334
            K  R  V++    P   TGK+   ++R  ++   K   S L
Sbjct: 509 AKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 550

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  184 bits (470), Expect = 4e-54
 Identities = 70/340 (20%), Positives = 128/340 (37%), Gaps = 58/340 (17%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
             M+ VG  +V +  F  +   E +E++  T    VP  +  L   +           +K
Sbjct: 240 NLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLK 299

Query: 61  KILNGGGGLPSELMKE------ATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 114
               G   +   L+++         + P+ +    +GMTE    +T         +    
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRL--DKST- 356

Query: 115 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCS--DGSS----HVGRILTRGAHVMLRY 168
                                G P   +ELKV S  DG        G I+ RG ++   Y
Sbjct: 357 -------------------TQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGY 397

Query: 169 W------DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 222
           W       +            +  TGD+G ID+ G +    R    IK  G  + P E+E
Sbjct: 398 WKREKENQECWWYDEKGRK--FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELE 455

Query: 223 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 282
           A+L++H  ++ + V+G  +    E+  A + L+  ++                +  E + 
Sbjct: 456 ALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGK--------------VDEEDII 501

Query: 283 QHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
           +  RE+ ++G+K  R  V + +  P T++GK+ R  +R +
Sbjct: 502 EWVRER-ISGYKRVRE-VEFVEELPRTASGKLLRRLLREK 539

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  183 bits (468), Expect = 8e-54
 Identities = 81/326 (24%), Positives = 131/326 (40%), Gaps = 53/326 (16%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +  L+ G   V + KF+ ++ L+ ++ +  TS+I VP + A L     + K     D  +
Sbjct: 255 LGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK----YDLSN 310

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           + +I +GG  L  E+ +     F    +   YG+TET+S++                   
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII---------------TP 355

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQF 172
            G+  P +         GK  P  + KV         G +  G +  +G  +M  Y +  
Sbjct: 356 EGDDKPGAS--------GKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNP 407

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A   +   E WL TGDIG  D+  + ++V R    IK  G  V P E+E+VLLQHP I 
Sbjct: 408 EATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIF 467

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              V G+ +    E+  A V L      +E                + +  +   + ++ 
Sbjct: 468 DAGVAGVPDPVAGELPGAVVVLESGKNMTE----------------KEVMDYVASQ-VSN 510

Query: 293 FKAPRLFVLWRKPFPLTSTGKI-RRD 317
            K  R  V +    P   TGKI  R 
Sbjct: 511 AKRLRGGVRFVDEVPKGLTGKIDGRA 536

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  181 bits (461), Expect = 7e-53
 Identities = 88/331 (26%), Positives = 138/331 (41%), Gaps = 59/331 (17%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +  L VGA  + +PKFE  S L  +E++ V+    VP +M  +A    + K     D  S
Sbjct: 243 LCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK----HDLSS 298

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++ I +GG  L  EL       FP+A+L   YGMTE    L     +             
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP--------- 349

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQF 172
             ++ P +         G    + E+K+           +  G I  RG  +M  Y +  
Sbjct: 350 -FDIKPGAC--------GTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLN-- 398

Query: 173 LAKPSVSTGEV-----WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ 227
              P  +T        WL TGDIG IDD   +++V R    IK  G  V P E+EA+L+ 
Sbjct: 399 --DPE-ATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIA 455

Query: 228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCRE 287
           HP I    VVG+ +    E+ VA V   E  Q                 + + ++Q+  +
Sbjct: 456 HPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ----------------ATEDEIKQYISK 499

Query: 288 KNLTGFKAPRLFVLWRKPFPLTSTGKI-RRD 317
           + +  +K  +  V + +  P   +GKI R++
Sbjct: 500 Q-VIFYKRIKR-VFFIEAIPKAPSGKILRKN 528

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  172 bits (439), Expect = 1e-49
 Identities = 73/332 (21%), Positives = 126/332 (37%), Gaps = 63/332 (18%)

Query: 4   LMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--SVK 60
           L VGA  + +  +  + +    + +H  T    VP + A++     +      R   +++
Sbjct: 248 LSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA----RADVAIR 303

Query: 61  KILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQ 117
              + G  LP E+              +++   G TE                       
Sbjct: 304 ICTSAGEALPREIGERFTAHFG----CEILDGIGSTEMLHIFLSN--------------- 344

Query: 118 AFGNVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRILTRGAHVMLRYWD 170
             G V   +         G+P P  E+++         DG   VG +  +G    + YW+
Sbjct: 345 RAGAVEYGTT--------GRPVPGYEIELRDEAGHAVPDG--EVGDLYIKGPSAAVMYWN 394

Query: 171 QFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG 230
                 +   GE W+ +GD       G     GR +  +K  G+ V P EVE VL+QH  
Sbjct: 395 NREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDA 453

Query: 231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL 290
           ++   VVG+ +  L +   A V L+  +  SE             + +E L+   +++ L
Sbjct: 454 VLEAAVVGVDHGGLVK-TRAFVVLKREFAPSE-------------ILAEELKAFVKDR-L 498

Query: 291 TGFKAPRLFVLWRKPFPLTSTGKIRRDEVRRE 322
              K PR  V      P T+TGKI+R ++R +
Sbjct: 499 APHKYPRDIVF-VDDLPKTATGKIQRFKLREQ 529

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  167 bits (426), Expect = 1e-46
 Identities = 86/326 (26%), Positives = 130/326 (39%), Gaps = 49/326 (15%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRD--S 58
           +  L VGA  + +PKFE    LE +++  VT    VP I+  +A     +K     D  S
Sbjct: 290 LCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEK----YDLSS 345

Query: 59  VKKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQA 118
           ++ + +G   L  EL       FP AKL   YGMTE    L     +             
Sbjct: 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKE---------- 395

Query: 119 FGNVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQF 172
              V   +         G    + E+K+           +  G I  RG  +M  Y +  
Sbjct: 396 PFPVKSGAC--------GTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNP 447

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A       + WL TGDIG IDD   +++V R    IK  G  V P E+EA+L+ HP I 
Sbjct: 448 AATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDIT 507

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
            + VV +      E+ VA V   +  + SE                + ++Q   ++ +  
Sbjct: 508 DVAVVAMKEEAAGEVPVAFVVKSKDSELSE----------------DDVKQFVSKQ-VVF 550

Query: 293 FKAPRLFVLWRKPFPLTSTGKI-RRD 317
           +K     V + +  P   +GKI R+D
Sbjct: 551 YKRINK-VFFTESIPKAPSGKILRKD 575

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  146 bits (370), Expect = 8e-40
 Identities = 73/339 (21%), Positives = 127/339 (37%), Gaps = 48/339 (14%)

Query: 2   AMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           A  +VGA  V   P+ +  S +E  +   VT    VP +   LA  +          +++
Sbjct: 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG--HRLKTLR 296

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +++ GG   P  L+          ++   YG+TETS  +    +         +  +   
Sbjct: 297 RLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEE-EKL-- 351

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCS--------DGSSHVGRILTRGAHVMLRYWDQF 172
                ++    G+    P P V L+V          DG + +G +  +G  +   Y+   
Sbjct: 352 -----TLKAKTGL----PIPLVRLRVADEEGRPVPKDGKA-LGEVQLKGPWITGGYYGNE 401

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A  S  T + +  TGDI   D+ G V +  R    IKSGGE +   ++E  L+ HP + 
Sbjct: 402 EATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVK 461

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              VV I + +  E  +A V  R      E                E+     +      
Sbjct: 462 EAAVVAIPHPKWQERPLAVVVPRGEKPTPE----------------ELNEHLLKAG-FAK 504

Query: 293 FKAPR--LFVLWRKPFPLTSTGKIRRDEVRREVMSHLKS 329
           ++ P   +F    +  P TS GK  +  +R +  ++   
Sbjct: 505 WQLPDAYVFA---EEIPRTSAGKFLKRALREQYKNYYGG 540

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  110 bits (277), Expect = 5e-27
 Identities = 77/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)

Query: 4   LMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIR--VKKTWKGRD- 57
             +GAC  F+   PKF+    L+ +  + + S++  P        + R  +++       
Sbjct: 270 WALGAC-TFVHLLPKFDPLVILKTLSSYPIKSMMGAP-------IVYRMLLQQDLSSYKF 321

Query: 58  -SVKKILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLET-P 112
             ++  +  G  L  E +   +  T       +  +YG TET   LT M     T++  P
Sbjct: 322 PHLQNCVTVGESLLPETLENWRAQTG----LDIRESYGQTETG--LTCMVS--KTMKIKP 373

Query: 113 GQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRILTRGAHV- 164
           G                     +G  A   ++++          G+   G I  R   + 
Sbjct: 374 G--------------------YMGTAASCYDVQIIDDKGNVLPPGT--EGDIGIRVKPIR 411

Query: 165 ----MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE 220
                  Y D      +   G+ WL  GD G  D+ G    +GR +  I S G  + P E
Sbjct: 412 PIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSE 470

Query: 221 VEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEV 280
           VE  L++HP ++   V+   +    E+V A V L   +   +         ++L   ++ 
Sbjct: 471 VENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDP--------EQL---TKE 519

Query: 281 LRQHCREKNLTGFKAPRL--FVLWRKPFPLTSTGKIRRDEVRR 321
           L+QH +      +K PR   FV      P T TGKI+R ++R 
Sbjct: 520 LQQHVKSV-TAPYKYPRKIEFV---LNLPKTVTGKIQRAKLRD 558

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 95.5 bits (238), Expect = 6e-22
 Identities = 55/262 (20%), Positives = 91/262 (34%), Gaps = 37/262 (14%)

Query: 81  FPKAKLISAYGMTETSSSLTFMTL-YDPTLETPGQLPQAFGNVTPNSVHQPQG---VCVG 136
           F K      YG+ E +  +T  T        T  +       V     + P     V  G
Sbjct: 318 FRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSG 377

Query: 137 KPAPHVE------LKVCSDGSSHVGRILTRGAHVMLRYWDQ-------FLAK-PSVSTGE 182
            P   V+      L  C      VG I  +   V   YW+Q       F  K        
Sbjct: 378 NPIQEVKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSA 435

Query: 183 VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ-HPGII--GIVVVGI 239
           ++L TGD+G + +   +++ GR    I   G+N YP+++E  L+      +        I
Sbjct: 436 IYLRTGDLGFLHEN-ELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVI 494

Query: 240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLF 299
                 ++ V C          E          +  L +E+  +   E      +   + 
Sbjct: 495 QEEHEYKLTVMC----------EVKNRFMDDVAQDNLFNEI-FELVYEN--HQLEVHTIV 541

Query: 300 VLWRKPFPLTSTGKIRRDEVRR 321
           ++  K  P T++GKIRR+  R+
Sbjct: 542 LIPLKAMPHTTSGKIRRNFCRK 563

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 92.6 bits (231), Expect = 6e-21
 Identities = 87/344 (25%), Positives = 141/344 (40%), Gaps = 83/344 (24%)

Query: 4   LMVGACHVFI---PKFESKSALEAVEQHCVTSLITVPAIMADLATLIR--VKKTWKGRD- 57
            + G   VF+    +FE+K+ LE   ++ VT+    P       T+ R  +K+     + 
Sbjct: 289 WIAGCA-VFVYDYDRFEAKNMLEKASKYGVTTFCAPP-------TIYRFLIKEDLSHYNF 340

Query: 58  -SVKKILNGGGGLPSELM---KEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPG 113
            ++K  +  G  L  E+     E T      KL+  +G TET  ++            P 
Sbjct: 341 STLKYAVVAGEPLNPEVFNRFLEFTG----IKLMEGFGQTETVVTIATF---------PW 387

Query: 114 QLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKV-------CSDGSSHVGRI---LTRGAH 163
             P+      P S+        GKP P  ++++       C  G    G I      G  
Sbjct: 388 MEPK------PGSI--------GKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKP 431

Query: 164 VMLR--YWDQFLAKPSVSTGEVWLD----TGDIGSIDDGGNVWLVGRRNGRIKSGGENVY 217
           V L   Y       P   T E W D    TGD+  +D+ G +W VGR +  IK+ G  V 
Sbjct: 432 VGLFVHYGK----DPE-RTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVG 486

Query: 218 PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 277
           P EVE+ L+QHP ++   + G+ +    +++ A + L + +  S+           L   
Sbjct: 487 PFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSD----------SL--- 533

Query: 278 SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 321
              L+ H +      +K PR+ + +    P T +GKIRR E+R 
Sbjct: 534 KNELQDHVK-NVTAPYKYPRI-IEFVPELPKTISGKIRRVEIRD 575

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 66/345 (19%), Positives = 118/345 (34%), Gaps = 88/345 (25%)

Query: 4   LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           L+ G     I K           ++EQ  +    + P+       L+    +     ++K
Sbjct: 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC--LMEASFSESMLPNMK 264

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP--QA 118
             L  G  LP+E+ ++    FPKA +++ YG TE + ++T + + +  L+    LP    
Sbjct: 265 TFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYC 324

Query: 119 FGNVTPNSVH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRI-LTRGAHVMLRYW 169
             +     +          P G   G      E+         +    ++ G      Y 
Sbjct: 325 KSDCR---LLIMKEDGTIAPDGE-KG------EI--------VIVGPSVSVG------YL 360

Query: 170 DQ-------FLAKPSVS---TGEV-WLDTGDI---GSIDDGGNVWLVGRRNGRIKSGGEN 215
                    F          TG+  +++ G +   G +D       +     R+    E 
Sbjct: 361 GSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQ-----IKLHGYRM----E- 410

Query: 216 VYPEEVEAVLLQHPGIIGIVVV----GIANARLTEMVVACVRLRESWQWSESNCDQSSKN 271
              EE+E  L     + G V+V    G     L  +VV                 + S  
Sbjct: 411 --LEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVP---------------GEHSFE 453

Query: 272 KELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
           KE  L+S  +++   E+ L  +  PR F+      P+T  GK+ R
Sbjct: 454 KEFKLTSA-IKKELNER-LPNYMIPRKFMYQSS-IPMTPNGKVDR 495

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 80.3 bits (199), Expect = 7e-17
 Identities = 67/344 (19%), Positives = 114/344 (33%), Gaps = 81/344 (23%)

Query: 4   LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           L +G     +PK            + Q  V    + P+  AD+A ++          ++ 
Sbjct: 210 LALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPS-FADMA-MLSDDFCQAKMPALT 267

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
                G  L     ++    FP AK+I+AYG TE + +L+ + +    ++   +LP   G
Sbjct: 268 HFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLP--IG 325

Query: 121 NVTPNS-VH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 171
              P+S  +           G   G      E+ V           +++G      Y + 
Sbjct: 326 YPKPDSPTYIIDEDGKELSSGE-QG------EIIVTGPA-------VSKG------YLNN 365

Query: 172 -------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-------RNGRIKSGGENVY 217
                  F        G+    TGDIGS+ +   +   GR          RI    E   
Sbjct: 366 PEKTAEAFFTFK----GQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRI----E--- 414

Query: 218 PEEVEAVLLQHPGIIGIVVVGIANA-----RLTEMVVACVRLRESWQWSESNCDQSSKNK 272
            E+V   L Q P +   V V   N       L   +V                    +  
Sbjct: 415 LEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVV-------------KDGVKERFD 461

Query: 273 ELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
             L  ++ ++   ++  +  +  P  F+ +R   PLT  GKI  
Sbjct: 462 RELELTKAIKASVKDH-MMSYMMPSKFL-YRDSLPLTPNGKIDI 503

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 61/343 (17%), Positives = 113/343 (32%), Gaps = 84/343 (24%)

Query: 4   LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           L  G     + K          E +++  +    + P+ +     L+    +        
Sbjct: 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMC--LMDPGFSQDLLPHAD 263

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
             +  G  LP  + K     FPKAK+ + YG TE + ++T + + +  +     LP   G
Sbjct: 264 TFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLP--VG 321

Query: 121 NVTPN-SVH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQ 171
              P+ ++          P+G   G      E+ +           ++RG      Y  +
Sbjct: 322 FAKPDMNIFIMDEEGQPLPEGE-KG------EIVIAGPS-------VSRG------YLGE 361

Query: 172 -------FLAKPSVS---TGEV-WLDTGDI---GSIDDGGNVWLVGRRNGRIKSGGENVY 217
                  F +        TG+  ++  G I   G +D       +     R+    E   
Sbjct: 362 PELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQ-----IKLHGYRM----E--- 409

Query: 218 PEEVEAVLLQHPGIIGIVVV----GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKE 273
            EE+E  + Q   +   VV+          L   +V                ++    KE
Sbjct: 410 LEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVP---------------EEHEFEKE 454

Query: 274 LLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
             L+S  +++      L  +  PR F+       +T+ GKI R
Sbjct: 455 FQLTSA-IKKELAAS-LPAYMIPRKFIYQDH-IQMTANGKIDR 494

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 71/345 (20%), Positives = 120/345 (34%), Gaps = 93/345 (26%)

Query: 4   LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           ++  A  +   +          + + Q  V  +    A+   L               ++
Sbjct: 669 MLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA-----GEDWMKGLR 723

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP--QA 118
            IL GG       +++A       KLI+ YG TE +   T   +     ++   LP  + 
Sbjct: 724 CILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVV-HDLPDSISSLPIGKP 782

Query: 119 FGNVTPNSVH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWD 170
             N +   V+        QP G  VG      EL +   G       +++G      Y +
Sbjct: 783 ISNAS---VYILNEQSQLQPFGA-VG------ELCISGMG-------VSKG------YVN 819

Query: 171 Q-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-------RNGRIKSGGENV 216
           +       F+  P    GE    TGD+      G +   GR       R  RI    E  
Sbjct: 820 RADLTKEKFIENP-FKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRI----E-- 872

Query: 217 YPEEVEAVLLQHPGIIGIVVV----GIANARLTEMVVACVRLRESWQWSESNCDQSSKNK 272
             EE+E  L ++PG+   VVV       +A +     A +  R                 
Sbjct: 873 -LEEIEKQLQEYPGVKDAVVVADRHESGDASI----NAYLVNRTQ--------------- 912

Query: 273 ELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI-RR 316
              LS+E ++ H +++ L  +  P+ F    +  PLT+ GK+ +R
Sbjct: 913 ---LSAEDVKAHLKKQ-LPAYMVPQTFTFLDE-LPLTTNGKVNKR 952

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 78/345 (22%), Positives = 112/345 (32%), Gaps = 101/345 (29%)

Query: 4   LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           L+ GA    I K          + + Q  +T +   P  +  L          +   S++
Sbjct: 245 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD--------PERILSIQ 296

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLP---Q 117
            ++  G      L+ +      K   I+AYG TET+      T +  T ET G       
Sbjct: 297 TLITAGSATSPSLVNKW---KEKVTYINAYGPTETT---ICATTWVATKETIGHSVPIGA 350

Query: 118 AFGNVTPNSVH--------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYW 169
              N     ++        +  G   G      EL +  +G       L RG      YW
Sbjct: 351 PIQNTQ---IYIVDENLQLKSVGE-AG------ELCIGGEG-------LARG------YW 387

Query: 170 DQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-------RNGRIKSGGEN 215
            +       F+  P    GE    TGD       GN+  +GR       R  R+    E 
Sbjct: 388 KRPELTSQKFVDNPF-VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRV----E- 441

Query: 216 VYPEEVEAVLLQHPGIIGIVVV----GIANARLTEMVVACVRLRESWQWSESNCDQSSKN 271
              EEVE++LL+H  I    V           L     A     +               
Sbjct: 442 --LEEVESILLKHMYISETAVSVHKDHQEQPYL----CAYFVSEKH-------------- 481

Query: 272 KELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR 316
               +  E LRQ   E+ L  +  P  F+   K  PLTS GKI R
Sbjct: 482 ----IPLEQLRQFSSEE-LPTYMIPSYFIQLDK-MPLTSNGKIDR 520

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 58/345 (16%), Positives = 99/345 (28%), Gaps = 88/345 (25%)

Query: 4   LMVGACHVFIPKFESKSAL-EAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKI 62
              G C V   +      L     +  VT    VP+ + D   L       +    +  +
Sbjct: 246 WRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPS-LLDQTGL-----VPEDAPHLVYL 299

Query: 63  LNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNV 122
             GG  +      +  +S  +  L++ YG TE +      +      ++           
Sbjct: 300 GVGGEKMTPRTQ-QIWSSSDRVALVNVYGPTEVT---IGCSAGRILPDS----------- 344

Query: 123 TPNSVHQPQGVCVGKPAPHVELKVCSDGSS-----------HV-GRILTRGAHVMLRYWD 170
                      C+G P       V + GS+            + G ++  G      Y +
Sbjct: 345 --------DTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANG------YLN 390

Query: 171 Q-----FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGR-------RNGRIKSGGENVYP 218
           +     F        G     TGDI  +D   ++  +GR       R  R+    E    
Sbjct: 391 RPDAKGFCDIN----GRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRL----E---L 439

Query: 219 EEVEAVLLQHPGIIGIVVV------GIANARLTEMVVACVRLRESWQWSESNCDQSSKNK 272
            EV  V+         VV       G +   L    V+ V    +    E      +   
Sbjct: 440 GEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFL----VSFVASSGAAVRGELRWINENYK- 494

Query: 273 ELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPL-TSTGKIRR 316
                +  LRQ C +  L  +  P   +      PL  ++ K   
Sbjct: 495 ---EINNSLRQACEQT-LPAYMVPDFIIPISF-IPLRDTSAKTDA 534

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 28/172 (16%)

Query: 58  SVKKILNGGGGLPSELMKE-----ATNSFPKAKLISAYGMTETSSSLTFMTLYD-PTLET 111
           ++  IL+G   + +  +K      A  +  +  +  +Y + E +  +        P    
Sbjct: 312 NILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVD 371

Query: 112 PGQLPQAFGNVTP-NSVHQPQGVCVGKPAPHVE-------LKVCSDGSSHVGRILTRGAH 163
                 + G+  P         +    P   +           C DG   VG I   G +
Sbjct: 372 FDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDG--TVGEIWVHGDN 429

Query: 164 VMLRYWDQ----------FLAKPSVSTGE-VWLDTGDIGSIDDGGNVWLVGR 204
           V   YW +           +  PS  T E  WL TGD G + D G ++++GR
Sbjct: 430 VANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTD-GKMFIIGR 480

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 57/340 (16%), Positives = 101/340 (29%), Gaps = 87/340 (25%)

Query: 4   LMVGACHVFIPKFESKSA---LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           L+ G C V              + + +    S     ++   L  L            ++
Sbjct: 226 LLNGGCCVLNDL-GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD-----PDCLGGLR 279

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLY--DPTLETPGQLP-- 116
           ++L GG  L    ++ A    P+  L++ YG TE +   TF   +           +P  
Sbjct: 280 QLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENT---TFTCCHVVTDDDLEEDDIPIG 336

Query: 117 QAFGNVTPNSVH---------QPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLR 167
           +A        V                 G      E+     G       L +G      
Sbjct: 337 KAIAGTA---VLLLDEHGQEIAEPDR-AG------EIVAFGAG-------LAQG------ 373

Query: 168 YWDQ-------FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEE 220
           Y +        F+  P          TGD    D+ G +  +GR +G++K  G  +    
Sbjct: 374 YRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPA 433

Query: 221 VEAVLLQHPGIIGIVVV---GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLS 277
           +E    + PGI+   ++        +L   + A                           
Sbjct: 434 LEQRFRRQPGILDCALLVRERNGVKQL---LCAWT-----------------------GK 467

Query: 278 SEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKI-RR 316
           ++   Q    + L  ++ P   V      PLT+ GK+ R 
Sbjct: 468 ADASPQALLRQ-LPTWQRPHACVRVEA-LPLTAHGKLDRA 505

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 46/312 (14%), Positives = 90/312 (28%), Gaps = 90/312 (28%)

Query: 74  MKEATNSFPKAKLISAYGMTETS-SSLTFMTLYDPTLETPGQLPQA-----FGNV-TPNS 126
           +++A      AK +   G+  +  + +         ++   ++          N  +P +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPET 197

Query: 127 VHQP-QGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKP--------- 176
           V +  Q +        ++    S  S H   I  R   +         +KP         
Sbjct: 198 VLEMLQKLLY-----QIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 177 SVSTGEVW----------LDTGDIGSIDDGGN-----VWLVGRRNGRIKSGGENVY---- 217
           +V   + W          L T      D         + L            +++     
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 218 -------PEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQ-WSESNCDQSS 269
                  P EV      +P  + I    IA   + + +        +W  W   NCD+ +
Sbjct: 312 DCRPQDLPREVLTT---NPRRLSI----IA-ESIRDGL-------ATWDNWKHVNCDKLT 356

Query: 270 KNKEL---LLSSEVLRQHCREKNLTGF----KAP--RLFVLWRKPFPLTSTGKIRRDEVR 320
              E    +L     R+      L+ F      P   L ++W           + + +V 
Sbjct: 357 TIIESSLNVLEPAEYRKMFDR--LSVFPPSAHIPTILLSLIW---------FDVIKSDV- 404

Query: 321 REVMSHL--KSL 330
             V++ L   SL
Sbjct: 405 MVVVNKLHKYSL 416

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 56/314 (17%), Positives = 106/314 (33%), Gaps = 74/314 (23%)

Query: 22  LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81
           ++ +       ++  P+ M +L   +  +       S+K  + G       L  E     
Sbjct: 177 VQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV 236

Query: 82  PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH 141
                +  YG++E              +  PG        V    V    G  + +   +
Sbjct: 237 -GIDALDIYGLSE--------------VMGPG--------VACECVETKDGPVIWEDHFY 273

Query: 142 VE------LKVCSDGSSHVGRI----LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIG 191
            E       +V  DGS   G +    LT+ A  ++RY                  T D+ 
Sbjct: 274 PEIIDPVTGEVLPDGS--QGELVFTSLTKEAMPVIRYR-----------------TRDLT 314

Query: 192 SID--DGGNVWLVGRRNGR----IKSGGENVYPEEVEAVLLQHPGIIG---IVVVGIANA 242
           ++       +  + +  GR    +   G NV+P ++E +++  P + G   I +    + 
Sbjct: 315 ALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGH- 373

Query: 243 RLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLW 302
            +  + +A V LR      E+    +   +  L  +  L+   +     G     + VL 
Sbjct: 374 -MDRLDLA-VELRS-----EAAASVTDGERAAL--ARELQHRIKTM--VGVS-SGVTVLA 421

Query: 303 RKPFPLTSTGKIRR 316
               P T+TGK RR
Sbjct: 422 AGGIPATATGKARR 435

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 39/249 (15%), Positives = 80/249 (32%), Gaps = 63/249 (25%)

Query: 22  LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81
           ++ ++      ++  P+ M  +A  I  +     + S++  + G     +++        
Sbjct: 175 VQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM 234

Query: 82  PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH 141
                +  YG++E                 PG        V    V    G  + +   +
Sbjct: 235 -GIDAVDIYGLSEVMG--------------PG--------VASECVETKDGPTIWEDHFY 271

Query: 142 VE------LKVCSDGSSHVGRI----LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIG 191
            E       +V  DG   +G +    LT+ A  ++RY                  T D+ 
Sbjct: 272 PEIIDPETGEVLPDGE--LGELVFTSLTKEALPIIRYR-----------------TRDLT 312

Query: 192 SIDDG-GNVW-----LVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG---IVVVGIANA 242
            +  G          + GR +  +   G NV+P ++E  LL+   +     IV+      
Sbjct: 313 RLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGP- 371

Query: 243 RLTEMVVAC 251
            L  + +  
Sbjct: 372 -LDVLTLNV 379

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 43/252 (17%), Positives = 82/252 (32%), Gaps = 67/252 (26%)

Query: 22  LEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF 81
           ++ +     T+L  +P+    LA + + +       ++K ++ G      E  ++     
Sbjct: 171 IKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML 230

Query: 82  PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH 141
              K  +++GMTE +             E   Q                 G+   +    
Sbjct: 231 -NVKAYNSFGMTEMNGPGVAF-------ECQEQ----------------NGMHFWEDCYL 266

Query: 142 VE------LKVCSDGSSHVGRI----LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIG 191
           VE       +   +G   +G +    L R    ++RY                  T D+ 
Sbjct: 267 VEIIDPETGEPVPEGE--IGELVLTTLDREMMPLIRYR-----------------TRDLT 307

Query: 192 SIDDGGN---------VWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG---IVVVGI 239
            I  G             + GR +      G N++P +VE +L+Q P +     I +  +
Sbjct: 308 RILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETV 367

Query: 240 ANARLTEMVVAC 251
            N    EM+V  
Sbjct: 368 NN--QDEMIVEV 377

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 38/166 (22%)

Query: 21  ALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS 80
               +    +  L+T P ++ +L     V      + S+ +I  GG  L  + +K   + 
Sbjct: 197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM--KQSLAQITLGGTELNLDEIKFIASE 254

Query: 81  -FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCV-GKP 138
             P  +  ++YG T                          G      +       +    
Sbjct: 255 ILPDCEFSASYGSTSA-----------------------LGVSRSLLITSESQQVIYDSF 291

Query: 139 APHVELKVCSDGSSH------VGRI----LTRGAHVMLRYWDQFLA 174
           +P +   V    ++        G +    L+  A    R  ++  A
Sbjct: 292 SPFITYDVVDSITAQTVEYGERGNVIVTHLSPWA-FYPRVAERDTA 336

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.95
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.79
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.62
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.58
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.37
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.25
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.1

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.9e-52  Score=397.73  Aligned_cols=286  Identities=29%  Similarity=0.424  Sum_probs=249.8

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..+++......  ..+++||.+++||+++++++.+++++.|
T Consensus       244 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gGe~l~~~~~~~~~~~~  321 (536)
T 3ni2_A          244 CGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK--HDLSSLRMIKSGGAPLGKELEDTVRAKF  321 (536)
T ss_dssp             HHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGG--SCCTTCCEEEEESSCCCHHHHHHHHHHC
T ss_pred             HHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccccc--CCCccceEEEECCCCCCHHHHHHHHHHC
Confidence            35778999999999999999999999999999999999999887654333  3588999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G  155 (334)
                      |++++++.||+||++.+++.+........                  ....+++|.|+++++++++|++      .|+.|
T Consensus       322 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G  383 (536)
T 3ni2_A          322 PQARLGQGYGMTEAGPVLAMCLAFAKEPF------------------DIKPGACGTVVRNAEMKIVDPETGASLPRNQPG  383 (536)
T ss_dssp             TTSEEEEEEECGGGSSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTTCCBCCTTCCE
T ss_pred             CCCCccccccccccchhhhcccccCCccc------------------cCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCcc
Confidence            99999999999999976554432211100                  0134469999999999999954      57889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+|+|++++.||+++++.+...|+.++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus       384 El~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~  463 (536)
T 3ni2_A          384 EICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAA  463 (536)
T ss_dssp             EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEE
T ss_pred             EEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEE
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++++++..++.++++|+..+.                ...+.+++++++++ .++.|++|+.++++ ++||+|++|||+
T Consensus       464 Vv~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~lP~t~~GKi~  525 (536)
T 3ni2_A          464 VVGLKDEDAGEVPVAFVVKSEK----------------SQATEDEIKQYISK-QVIFYKRIKRVFFI-EAIPKAPSGKIL  525 (536)
T ss_dssp             EEEEEETTTEEEEEEEEEECTT----------------CCCCHHHHHHHHHT-TSCGGGCCSEEEEC-SCCCBCTTSCBC
T ss_pred             EEeeecCCCCceeEEEEEecCC----------------CCCCHHHHHHHHHH-hccCCccccEEEEE-ecCCCCCCCCee
Confidence            9999999889999999987764                12557889999999 79999999998775 889999999999


Q ss_pred             hHHHHHHHHh
Q 019921          316 RDEVRREVMS  325 (334)
Q Consensus       316 r~~l~~~~~~  325 (334)
                      |++|++++.+
T Consensus       526 R~~L~~~~~~  535 (536)
T 3ni2_A          526 RKNLKEKLAG  535 (536)
T ss_dssp             HHHHHTC---
T ss_pred             HHHHHHHhcc
Confidence            9999987753

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.8e-52  Score=398.11  Aligned_cols=289  Identities=25%  Similarity=0.370  Sum_probs=250.8

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+|+.|+++++.+.+++..+++.++++++|+++++|+++..+++.......  .+++||.+++||+++++++.+++.+.|
T Consensus       245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gG~~l~~~~~~~~~~~~  322 (539)
T 1mdb_A          245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD--DLSSLQVLQVGGAKFSAEAARRVKAVF  322 (539)
T ss_dssp             HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC--CCTTCCEEEEESSCCCHHHHTTHHHHT
T ss_pred             HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCC--CccceeEEEEcCCCCCHHHHHHHHHHh
Confidence            467899999999999999999999999999999999999999887654332  578999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCc-ceEEEeeCC-----CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPH-VELKVCSDG-----SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~-~~~~i~~~~-----~g~~G  155 (334)
                       ++++++.||+||++..++.  .....                    .....++|+|+++ .+++++|++     .|+.|
T Consensus       323 -~~~~~~~YG~TE~~~~~~~--~~~~~--------------------~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~G  379 (539)
T 1mdb_A          323 -GCTLQQVFGMAEGLVNYTR--LDDPE--------------------EIIVNTQGKPMSPYDESRVWDDHDRDVKPGETG  379 (539)
T ss_dssp             -CSEEEEEEECTTSCEEECC--TTSCH--------------------HHHHHCCCEESSTTCEEEEECTTSCBCCTTCCE
T ss_pred             -CCcEEEEEcCCCCcccccC--CCCcH--------------------HhcCCCCCcccCCCceEEEECCCCCCCcCCCcc
Confidence             8999999999996533221  11100                    0023469999975 579999875     57889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+|+|++++.||+++++.+...|..++||+|||+|++++||+++|.||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus       380 El~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~  459 (539)
T 1mdb_A          380 HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAA  459 (539)
T ss_dssp             EEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEE
T ss_pred             eEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEE
Confidence            99999999999999999999888888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++.+++..++.++++|+++..                 ..+.+++++++++..++.|++|+.++++ ++||+|++||++
T Consensus       460 vv~~~~~~~g~~~~a~vv~~~~-----------------~~~~~~l~~~l~~~~L~~~~~P~~i~~v-~~lP~t~~GKi~  521 (539)
T 1mdb_A          460 MVSMPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGLAAYKIPDRVEFV-ESFPQTGVGKVS  521 (539)
T ss_dssp             EEEEEETTTEEEEEEEEEESSS-----------------CCCHHHHHHHHHHTTCCGGGSCSEEEEC-SSCCBCTTSCBC
T ss_pred             EEeccccccCceEEEEEEECCC-----------------CCCHHHHHHHHHhCCCCcccCCCEEEEe-ccCCCCCCcCEe
Confidence            9999998888899999987642                 2456889999999339999999998875 789999999999


Q ss_pred             hHHHHHHHHhhcccCCCC
Q 019921          316 RDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       316 r~~l~~~~~~~~~~l~~~  333 (334)
                      |++|++++.++|+++|+.
T Consensus       522 r~~L~~~~~~~i~~~y~~  539 (539)
T 1mdb_A          522 KKALREAISEKLLAGFKK  539 (539)
T ss_dssp             HHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHhccccC
Confidence            999999999999999973

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.3e-51  Score=392.85  Aligned_cols=282  Identities=27%  Similarity=0.361  Sum_probs=247.8

Q ss_pred             ccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCCCc
Q 019921            6 VGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPKAK   85 (334)
Q Consensus         6 ~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~   85 (334)
                      .|+++++.+.+++..+++.|+++++|+++++|+++..|.+......  ..+++||.+++||+++++++.+++.+.|++++
T Consensus       260 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~  337 (548)
T 2d1s_A          260 CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK--YDLSNLVEIASGGAPLSKEVGEAVARRFNLPG  337 (548)
T ss_dssp             TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGG--SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred             cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccc--ccccceeEEEEcCccCCHHHHHHHHHHcCCCc
Confidence            8999999999999999999999999999999999999887543322  25789999999999999999999999998889


Q ss_pred             eEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeEEEE
Q 019921           86 LISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGRILT  159 (334)
Q Consensus        86 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Gel~v  159 (334)
                      +++.||+||++..++......                       ...+++|.|+|+++++++|++      .|+.|||++
T Consensus       338 i~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v  394 (548)
T 2d1s_A          338 VRQGYGLTETTSAIIITPEGD-----------------------DKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCV  394 (548)
T ss_dssp             CEEEEECGGGSSEEEECCTTC-----------------------CCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEE
T ss_pred             eeeccccccccceeeecCccc-----------------------CCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEE
Confidence            999999999987655421110                       033469999999999999843      578899999


Q ss_pred             cCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEE
Q 019921          160 RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI  239 (334)
Q Consensus       160 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  239 (334)
                      +|++++.||+++++.+...|+.++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.
T Consensus       395 ~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~  474 (548)
T 2d1s_A          395 KGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV  474 (548)
T ss_dssp             ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEE
T ss_pred             CCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEE
Confidence            99999999999999988888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccce-EEEeccCCccCCCCCccchHH
Q 019921          240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTGKIRRDE  318 (334)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~GKv~r~~  318 (334)
                      +++..++.++++|++.++                ...+.+++++++++ .++.|++|+ .+.++ ++||+|++||++|++
T Consensus       475 ~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~-~l~~~~~p~~~i~~v-~~lP~t~~GKi~r~~  536 (548)
T 2d1s_A          475 PDPVAGELPGAVVVLESG----------------KNMTEKEVMDYVAS-QVSNAKRLRGGVRFV-DEVPKGLTGKIDGRA  536 (548)
T ss_dssp             EETTTEEEEEEEEEECTT----------------CCCCHHHHHHHHHT-TSCGGGSCTTCEEEC-SSCCBCTTSCBCHHH
T ss_pred             EcCCCCeeeEEEEEEcCC----------------CCCCHHHHHHHHHH-hccccccccccEEEc-cCCCCCCcchhHHHH
Confidence            998888999999988764                12456889999999 799999999 77665 889999999999999


Q ss_pred             HHHHHHhhcccC
Q 019921          319 VRREVMSHLKSL  330 (334)
Q Consensus       319 l~~~~~~~~~~l  330 (334)
                      |++++.+.|+++
T Consensus       537 L~~~~~~~i~~~  548 (548)
T 2d1s_A          537 IREILKKPVAKM  548 (548)
T ss_dssp             HHHHHHSCC---
T ss_pred             HHHHHhhhhhcC
Confidence            999999988764

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=5.1e-51  Score=385.00  Aligned_cols=279  Identities=25%  Similarity=0.409  Sum_probs=246.3

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +++.|+++++.+.+++..+++.++  ++|+++++|+++..+++......  ..++++|.+++||+++++++.+.+.+.+ 
T Consensus       218 ~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gg~~l~~~~~~~~~~~~-  292 (503)
T 4fuq_A          218 TLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTK--ETTGHMRLFISGSAPLLADTHREWSAKT-  292 (503)
T ss_dssp             HHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCST--TTTTTCCEEEECSSCCCHHHHHHHHHHH-
T ss_pred             HHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccc--cchhhcEEEEECCCCCCHHHHHHHHHHh-
Confidence            567899999999999999999998  89999999999999887654332  2578999999999999999999999998 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGR  156 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Ge  156 (334)
                      ++++++.||+||++...+..... .                      ...+++|.|+|+++++++|++      .|+.||
T Consensus       293 ~~~~~~~YG~TE~~~~~~~~~~~-~----------------------~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GE  349 (503)
T 4fuq_A          293 GHAVLERYGMTETNMNTSNPYDG-D----------------------RVPGAVGPALPGVSARVTDPETGKELPRGDIGM  349 (503)
T ss_dssp             SCCEEECCEETTTEECBCCCSSS-C----------------------CCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEE
T ss_pred             CCCccceEcccccCcccccCCCC-C----------------------CcCCccccCCCCeEEEEEECCCCCCCcCCCceE
Confidence            89999999999998654321110 0                      134479999999999999944      678899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+|+|++++.||+++++.+...|..++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|
T Consensus       350 l~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v  429 (503)
T 4fuq_A          350 IEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAV  429 (503)
T ss_dssp             EEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred             EEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence            99999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++++++..++.++++|++.++                ...+.+++++++++ .++.|++|+.++++ ++||+|++||++|
T Consensus       430 v~~~~~~~~~~~~a~v~~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R  491 (503)
T 4fuq_A          430 IGVPHADFGEGVTAVVVRDKG----------------ATIDEAQVLHGLDG-QLAKFKMPKKVIFV-DDLPRNTMGKVQK  491 (503)
T ss_dssp             EEEEETTTEEEEEEEEEECTT----------------CCCCHHHHHHHHBT-TBCGGGCCSEEEEE-SCCCBCTTSCBCH
T ss_pred             EEeEchhcCceeEEEEEeCCC----------------CCCCHHHHHHHHHh-hcccCCCCCEEEEE-CCCCCCcccceeH
Confidence            999999889999999998765                12456889999999 79999999998875 7899999999999


Q ss_pred             HHHHHHHHhhc
Q 019921          317 DEVRREVMSHL  327 (334)
Q Consensus       317 ~~l~~~~~~~~  327 (334)
                      ++|++++.+..
T Consensus       492 ~~L~~~~~~~~  502 (503)
T 4fuq_A          492 NVLRETYKDIY  502 (503)
T ss_dssp             HHHHHHTTTTT
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=6.6e-51  Score=390.11  Aligned_cols=282  Identities=24%  Similarity=0.396  Sum_probs=225.2

Q ss_pred             ceeeccceEEEc--CCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            2 AMLMVGACHVFI--PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         2 ~~l~~G~~~v~~--~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      .++..|+++++.  +.+++..+++.++++++|+++++|++++.|.+.   .....++++||.+++||++++++++++|.+
T Consensus       287 ~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~---~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~  363 (580)
T 3etc_A          287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE---DLSHYNFSTLKYAVVAGEPLNPEVFNRFLE  363 (580)
T ss_dssp             HHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS---CC---CCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred             HHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc---ccccCCCccceEEEEccCCCCHHHHHHHHH
Confidence            356789999887  469999999999999999999999999988764   222235789999999999999999999999


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                      .+ ++++++.||+||++..++.......                       .++++|+|+|+++++|+|++     .|+.
T Consensus       364 ~~-g~~i~~~YG~TE~~~~~~~~~~~~~-----------------------~~~~~G~p~~~~~v~ivd~~g~~~~~g~~  419 (580)
T 3etc_A          364 FT-GIKLMEGFGQTETVVTIATFPWMEP-----------------------KPGSIGKPTPGYKIELMDRDGRLCEVGEE  419 (580)
T ss_dssp             HH-SCCCEEEECCTTSSCCEECCTTSCC-----------------------CTTCCBEECTTCEEEEECTTSCBCCTTCC
T ss_pred             Hh-CCeEecccccccccceeecCCCCCC-----------------------CCCccccCCCCCEEEEECCCCCCCCCCCc
Confidence            88 8999999999999865544322111                       33469999999999999976     5789


Q ss_pred             eEEEEcC-----cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCC
Q 019921          155 GRILTRG-----AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP  229 (334)
Q Consensus       155 Gel~v~g-----~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  229 (334)
                      |||+|+|     +.++.||+++++.+...| .+|||+|||+|++++||+++|+||.||+||++|++|+|.+||++|.+||
T Consensus       420 GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p  498 (580)
T 3etc_A          420 GEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP  498 (580)
T ss_dssp             EEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTST
T ss_pred             eEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence            9999997     789999999999998888 4789999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC
Q 019921          230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT  309 (334)
Q Consensus       230 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t  309 (334)
                      .|.+++|++++++..++.+.++|++.++....             ....++|++++++ .++.|++|+.++++ ++||+|
T Consensus       499 ~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~-------------~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t  563 (580)
T 3etc_A          499 AVLECAITGVPDPVRGQVIKATIVLTKDYTPS-------------DSLKNELQDHVKN-VTAPYKYPRIIEFV-PELPKT  563 (580)
T ss_dssp             TEEEEEEEEEEETTTEEEEEEEEEECTTCCCC-------------HHHHHHHHHHHHH-HSCGGGCCSEEEEE-CC----
T ss_pred             CeeeEEEEeeeccCCCcEEEEEEEECCCCCCC-------------HHHHHHHHHHHHh-hCCCccCCeEEEEe-CCCCCC
Confidence            99999999999999999999999988762211             1345789999999 79999999998775 789999


Q ss_pred             CCCccchHHHHHHHHhh
Q 019921          310 STGKIRRDEVRREVMSH  326 (334)
Q Consensus       310 ~~GKv~r~~l~~~~~~~  326 (334)
                      ++|||+|++|++++.++
T Consensus       564 ~sGKi~R~~Lr~~~~~q  580 (580)
T 3etc_A          564 ISGKIRRVEIRDKDQSQ  580 (580)
T ss_dssp             -----------------
T ss_pred             CCcCCcHHHHHhHhhcC
Confidence            99999999999987653

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=2.7e-50  Score=390.87  Aligned_cols=291  Identities=18%  Similarity=0.190  Sum_probs=246.2

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      ++|++|++++++++    +++..+++.++++++|+++++|++++.|.+.........++++||.+++||+++++++++++
T Consensus       319 ~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~  398 (652)
T 1pg4_A          319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY  398 (652)
T ss_dssp             HHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHH
T ss_pred             HHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHH
Confidence            56889999999875    58999999999999999999999999998765432223357899999999999999999999


Q ss_pred             HhhCCC---CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC----
Q 019921           78 TNSFPK---AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----  150 (334)
Q Consensus        78 ~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~----  150 (334)
                      .+.+ +   +++++.||+||+++.++........                     ...+++|+|+++++++|+|++    
T Consensus       399 ~~~~-g~~~~~i~~~YG~TE~~~~~~~~~~~~~~---------------------~~~~s~G~p~~g~~v~i~d~~g~~v  456 (652)
T 1pg4_A          399 WKKI-GKEKCPVVDTWWQTETGGFMITPLPGAIE---------------------LKAGSATRPFFGVQPALVDNEGHPQ  456 (652)
T ss_dssp             HHHT-TTTCSCEEEEBCCGGGSSCSBCCCTTTCC---------------------BCTTCCBSBCTTCCEEEECTTCCBC
T ss_pred             HHHh-CCCCCcEEccccCcccccceecCCCCCcC---------------------ccCCccccCcCCCeEEEECCCCCCc
Confidence            9988 5   8999999999999765543221100                     134479999999999999976    


Q ss_pred             -CCceeEEEEcC--cchhhhhhhcccCCCCccC--CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          151 -SSHVGRILTRG--AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       151 -~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                       .|+.|||+++|  ++++.|||++++.+...+.  .+|||+|||+|++|+||+++|+||.||+||++|++|+|.+||++|
T Consensus       457 ~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l  536 (652)
T 1pg4_A          457 EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL  536 (652)
T ss_dssp             CSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHH
T ss_pred             CCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHH
Confidence             46789999999  7899999999887655442  378999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCC
Q 019921          226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP  305 (334)
Q Consensus       226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~  305 (334)
                      .+||.|.+++|++++++..++.++++|+++++...             .....++|++++++ .++.|++|+.++++ +.
T Consensus       537 ~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~-------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~  601 (652)
T 1pg4_A          537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP-------------SPELYAEVRNWVRK-EIGPLATPDVLHWT-DS  601 (652)
T ss_dssp             HHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC-------------CHHHHHHHHHHHHH-HTCGGGCCSEEEEC-SC
T ss_pred             HhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC-------------CHHHHHHHHHHHHH-hCCCCcCCeEEEEc-CC
Confidence            99999999999999998889999999998865110             01135789999999 79999999998875 78


Q ss_pred             ccCCCCCccchHHHHHHHHhhccc
Q 019921          306 FPLTSTGKIRRDEVRREVMSHLKS  329 (334)
Q Consensus       306 lP~t~~GKv~r~~l~~~~~~~~~~  329 (334)
                      ||+|++|||+|++|++.+.+.++.
T Consensus       602 lP~T~sGKi~R~~L~~~~~~~~~~  625 (652)
T 1pg4_A          602 LPKTRSGKIMRRILRKIAAGDTSN  625 (652)
T ss_dssp             CCBCTTSCBCHHHHHHHHHTC---
T ss_pred             CCCCCCccchHHHHHHHHhCCCCC
Confidence            999999999999999999887544

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.4e-49  Score=375.50  Aligned_cols=278  Identities=27%  Similarity=0.451  Sum_probs=242.1

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++.+.+++..+++.++++++|+++++|+++..|.+..........+++||.+++||+++++++.+++.+.|
T Consensus       217 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  296 (504)
T 1t5h_X          217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL  296 (504)
T ss_dssp             HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC
T ss_pred             HHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc
Confidence            46788999999999999999999999999999999999999988753211223578999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC--------CCc
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SSH  153 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~--------~g~  153 (334)
                       ++.+++.||+||++.  +.... ..                       ..+++|.|.+++++++++++        .|+
T Consensus       297 -~~~~~~~YG~TE~~~--~~~~~-~~-----------------------~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~  349 (504)
T 1t5h_X          297 -PGEKVNIYGTTEAMN--SLYMR-QP-----------------------KTGTEMAPGFFSEVRIVRIGGGVDEIVANGE  349 (504)
T ss_dssp             -CSEEEEEEEETTTEE--EEEEE-SC-----------------------SSSSEEBCCTTCCEEEECTTSCTTCBCCTTC
T ss_pred             -Ccceeeeeccccccc--ccccc-CC-----------------------CCCccccCCCCCceeEEeccCCCCCcCCCCC
Confidence             789999999999932  22211 10                       22358999999999998864        467


Q ss_pred             eeEEEEc-CcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcc
Q 019921          154 VGRILTR-GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII  232 (334)
Q Consensus       154 ~Gel~v~-g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~  232 (334)
                      .|||+++ |+.++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.
T Consensus       350 ~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~  428 (504)
T 1t5h_X          350 EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT  428 (504)
T ss_dssp             CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEE
T ss_pred             cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcc
Confidence            8999999 8999999999999888888 6789999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCC
Q 019921          233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTG  312 (334)
Q Consensus       233 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~G  312 (334)
                      +++|++.+++..++.++++|+++++                ...+.+++++++++..++.|++|+.++++ ++||+|++|
T Consensus       429 ~a~Vv~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~G  491 (504)
T 1t5h_X          429 EVVVIGLADQRWGQSVTACVVPRLG----------------ETLSADALDTFCRSSELADFKRPKRYFIL-DQLPKNALN  491 (504)
T ss_dssp             EEEEEEEECSSSSEEEEEEEEECTT----------------CCCCHHHHHHHHHTSSCCGGGSCSEEEEC-SCCCBCTTS
T ss_pred             eEEEEEeecCCCCcEEEEEEEecCC----------------cCcCHHHHHHHHhhccCcccccceEEEEh-hhCCCCCCC
Confidence            9999999998888999999998764                12456788999987459999999999875 789999999


Q ss_pred             ccchHHHHHHHH
Q 019921          313 KIRRDEVRREVM  324 (334)
Q Consensus       313 Kv~r~~l~~~~~  324 (334)
                      ||+|++|++++.
T Consensus       492 Ki~r~~L~~~~~  503 (504)
T 1t5h_X          492 KVLRRQLVQQVS  503 (504)
T ss_dssp             CBCHHHHHHHHC
T ss_pred             CEeHHHHHHHhc
Confidence            999999999874

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.9e-51  Score=392.07  Aligned_cols=289  Identities=26%  Similarity=0.374  Sum_probs=154.0

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++.+.+++..+++.++++++|+++++|+++..+++......  ..+++||.+++||+++++++.+++.+.|
T Consensus       254 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~  331 (550)
T 3rix_A          254 GYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK--YDLSNLHEIASGGAPLSKEVGEAVAKRF  331 (550)
T ss_dssp             HHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGG--SCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred             HHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccc--cCcccccEEEEecCCCCHHHHHHHHHHc
Confidence            45788999999999999999999999999999999999999987654433  2578999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G  155 (334)
                      +...+++.||+||++..++.......                       ..+++|+|+|+++++|+|++      .|+.|
T Consensus       332 ~~~~v~~~YG~TE~~~~~~~~~~~~~-----------------------~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~G  388 (550)
T 3rix_A          332 HLPGIRQGYGLTETTSAILITPEGDD-----------------------KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRG  388 (550)
T ss_dssp             TCSCCEEEEECGGGSSEEEECCTTCC-----------------------CTTEEEEECTTCEEEEECTTTCCBCCTTCCE
T ss_pred             CCCccccccCcCccccceecCCCCCC-----------------------CCCCcccccCCcEEEEEeCCCCcCCCCCCCe
Confidence            44459999999999976654332211                       33479999999999999854      57889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+|+|++++.||+++++.+...|+.++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus       389 El~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~  468 (550)
T 3rix_A          389 ELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG  468 (550)
T ss_dssp             EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC---------------------------------
T ss_pred             EEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEE
Confidence            99999999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccce-EEEeccCCccCCCCCcc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPR-LFVLWRKPFPLTSTGKI  314 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~~~~~~~~lP~t~~GKv  314 (334)
                      |++++++..++.++++|++.++                ...+.+++++++++ .++.++.|. .+++ +++||+|++||+
T Consensus       469 vv~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~-~l~~~~~~~~~i~~-v~~lP~t~~GKi  530 (550)
T 3rix_A          469 VAGLPDDDAGELPAAVVVLEHG----------------KTMTEKEIVDYVAS-QVTTAKKLRGGVVF-VDEVPKGLTGKL  530 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEeecCCCCceEEEEEEecCC----------------CCCCHHHHHHHHHH-hcccccccCCceEE-EeecCCCCCcce
Confidence            9999999889999999987765                12456788899988 688886655 4554 488999999999


Q ss_pred             chHHHHHHHHhhcccCCCC
Q 019921          315 RRDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       315 ~r~~l~~~~~~~~~~l~~~  333 (334)
                      +|++|++++.+..++-++.
T Consensus       531 ~r~~L~~~~~~~~~~~~~~  549 (550)
T 3rix_A          531 DARKIREILIKAKKGGKSK  549 (550)
T ss_dssp             -------------------
T ss_pred             eHHHHHHHHHhhccccccC
Confidence            9999999998887765554

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.1e-49  Score=377.13  Aligned_cols=280  Identities=24%  Similarity=0.456  Sum_probs=245.3

Q ss_pred             eeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCC
Q 019921            4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK   83 (334)
Q Consensus         4 l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~   83 (334)
                      ++.|+++++.+.+++..+++.++++++|++.++|+++..|.+.......  .+++||.+++||+++++++.+++.+.  +
T Consensus       233 ~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gGe~l~~~~~~~~~~~--~  308 (517)
T 3r44_A          233 AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL--DAPDFRYFITGGAPMPEALIKIYAAK--N  308 (517)
T ss_dssp             HHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHC--CCTTCCEEEECSSCCCHHHHHHHHHT--T
T ss_pred             HhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccC--CCCcccEEEECCCCCCHHHHHHHHhc--C
Confidence            3489999999999999999999999999999999999999877654433  57899999999999999999999886  8


Q ss_pred             CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC----CCceeEEEE
Q 019921           84 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG----SSHVGRILT  159 (334)
Q Consensus        84 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~----~g~~Gel~v  159 (334)
                      +++++.||+||++..++........                     ...+++|.|.++++++++|++    +...|||+|
T Consensus       309 ~~~~~~YG~TE~~~~~~~~~~~~~~---------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v  367 (517)
T 3r44_A          309 IEVVQGYALTESCGGGTLLLSEDAL---------------------RKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVI  367 (517)
T ss_dssp             CEEEEEEECGGGTTCEEEECGGGTT---------------------TTTTCCBEECTTEEEEEECTTSCEESSEEEEEEE
T ss_pred             CcEEEeecccccccceeecCCcccc---------------------ccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEE
Confidence            9999999999998766544332211                     033469999999999999876    222799999


Q ss_pred             cCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEE
Q 019921          160 RGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGI  239 (334)
Q Consensus       160 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  239 (334)
                      +|++++.||+++++.+...| .++||+|||+|++++||+++|+||.||+||++|++|+|.+||++|.+||+|.+++|+++
T Consensus       368 ~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~  446 (517)
T 3r44_A          368 KSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGL  446 (517)
T ss_dssp             EETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEE
T ss_pred             eCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEec
Confidence            99999999999999998888 67999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHH
Q 019921          240 ANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEV  319 (334)
Q Consensus       240 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l  319 (334)
                      +++..++.++++| +.+.                ...+.++|++++++ .|+.|++|+.++++ ++||+|++|||+|++|
T Consensus       447 ~~~~~g~~~~a~v-~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~L  507 (517)
T 3r44_A          447 PDEKWGEIAAAIV-VADQ----------------NEVSEQQIVEYCGT-RLARYKLPKKVIFA-EAIPRNPTGKILKTVL  507 (517)
T ss_dssp             EETTTEEEEEEEE-EECT----------------TTCCHHHHHHHHHH-HSCGGGSCSEEEEC-SCCCBCTTCCBCHHHH
T ss_pred             cccccCceEEEEE-ECCC----------------CCCCHHHHHHHHHH-hCCCCCCCCEEEEE-CCCCCCCCcCccHHHH
Confidence            9998888888888 4443                12556889999999 79999999998875 8899999999999999


Q ss_pred             HHHHHhhcc
Q 019921          320 RREVMSHLK  328 (334)
Q Consensus       320 ~~~~~~~~~  328 (334)
                      ++.+.+.+.
T Consensus       508 ~~~~~~~~~  516 (517)
T 3r44_A          508 REQYSATVP  516 (517)
T ss_dssp             HHHHGGGCC
T ss_pred             HHHHHhhcc
Confidence            999998775

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=8.6e-50  Score=380.58  Aligned_cols=287  Identities=23%  Similarity=0.330  Sum_probs=210.8

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh-
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS-   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~-   80 (334)
                      .++..|+++++.+.+++..+++.++++++|+++++|+++..|++..........+++||.+++||+++++++.+++.+. 
T Consensus       241 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~  320 (549)
T 3g7s_A          241 LMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLA  320 (549)
T ss_dssp             THHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHH
T ss_pred             HHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999887665533467899999999999999999999987 


Q ss_pred             ---CC--CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----
Q 019921           81 ---FP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----  150 (334)
Q Consensus        81 ---~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----  150 (334)
                         ++  ++++++.||+||++.+++........                      ...++|.|+++++++++|++     
T Consensus       321 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~~~i~d~~~g~~~  378 (549)
T 3g7s_A          321 AEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLD----------------------KSTTQGVPMSDIELKVISLEDGREL  378 (549)
T ss_dssp             HHHSSCTTCEEEEEEECGGGSSEEEECCGGGGG----------------------GTTSCCEECTTCEEEEECSSSCCEE
T ss_pred             HhhcCCccccccceEeccccchhhhcCCccccC----------------------cCCCccccCCCCEEEEEeCCCCcCC
Confidence               62  38999999999999766554332111                      23368999999999999843     


Q ss_pred             -CCceeEEEEcCcchhhhhhhcccCCCCccC--CCc--eEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHH
Q 019921          151 -SSHVGRILTRGAHVMLRYWDQFLAKPSVST--GEV--WLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVL  225 (334)
Q Consensus       151 -~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~--~~~--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l  225 (334)
                       .|+.|||+|+|++++.||+++++.+...|.  .+|  ||+|||+|++++||+++|+||.||+||++|++|+|.+||++|
T Consensus       379 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  458 (549)
T 3g7s_A          379 GVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALL  458 (549)
T ss_dssp             CTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHH
T ss_pred             CCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHH
Confidence             578899999999999999999999988763  455  999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCC
Q 019921          226 LQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKP  305 (334)
Q Consensus       226 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~  305 (334)
                      .+||+|.+++|++.+++..++.++++|+++++..              ...+.++|++++++ .|+.|++|+.++++ ++
T Consensus       459 ~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~--------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~  522 (549)
T 3g7s_A          459 MKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR--------------GKVDEEDIIEWVRE-RISGYKRVREVEFV-EE  522 (549)
T ss_dssp             TTSTTEEEEEEECCCC------CEEEEEECSTTT--------------TSCCHHHHHHHHHT-TCC-----CCCCEE-EE
T ss_pred             HhCCCeeeEEEEeeEccccCceEEEEEEECCCcc--------------CcCCHHHHHHHHHH-hccCcccceEEEEe-cc
Confidence            9999999999999999888899999999876411              12567889999999 89999999988765 77


Q ss_pred             ccCCCCCccchHHHHHHHHhh
Q 019921          306 FPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       306 lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      ||+|++|||+|++|++.+.+.
T Consensus       523 lP~t~~GKi~R~~L~~~~~~~  543 (549)
T 3g7s_A          523 LPRTASGKLLRRLLREKEAEG  543 (549)
T ss_dssp             CC-------------------
T ss_pred             CCCCCCcCEeHHHHHHHhhcc
Confidence            999999999999999987654

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.6e-49  Score=373.35  Aligned_cols=275  Identities=28%  Similarity=0.405  Sum_probs=225.2

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++.+.+++..+++.++++++|+++++|+++..|.+.....     ..+||.+++||+++++++.+++.+ +
T Consensus       224 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----~~~lr~i~~gG~~l~~~~~~~~~~-~  297 (501)
T 3ipl_A          224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE-----PYNLQKILLGGAKLSATMIETALQ-Y  297 (501)
T ss_dssp             HHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS-----CTTCCEEEECSSCCCHHHHHHHHH-T
T ss_pred             HHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC-----cCcccEEEEeCCCCCHHHHHHHHH-h
Confidence            4678999999999999999999999999999999999999998764322     238999999999999999999988 4


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcC
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG  161 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g  161 (334)
                       ++++++.||+||+++.++.........                     ...++|.|+++++++++|++.++.|||+++|
T Consensus       298 -~~~~~~~YG~TE~~~~~~~~~~~~~~~---------------------~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g  355 (501)
T 3ipl_A          298 -NLPIYNSFGMTETCSQFLTATPEMLHA---------------------RPDTVGMPSANVDVKIKNPNKEGHGELMIKG  355 (501)
T ss_dssp             -TCCEEEEEEEGGGTEEEEEECHHHHHH---------------------CTTCCBEECTTCEEEEESCCSSCCEEEEEES
T ss_pred             -CCCEeccccccccccceeecCcccccc---------------------CCCCCCCCCCCcEEEEecCCCCCccEEEEec
Confidence             899999999999986544332211000                     2235999999999999999888999999999


Q ss_pred             cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEec
Q 019921          162 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIAN  241 (334)
Q Consensus       162 ~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  241 (334)
                      +.++.||+++++.+.. + .++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.++
T Consensus       356 ~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~  433 (501)
T 3ipl_A          356 ANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPD  433 (501)
T ss_dssp             TTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred             cchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEec
Confidence            9999999999998887 4 6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchHHHHH
Q 019921          242 ARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR  321 (334)
Q Consensus       242 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~~l~~  321 (334)
                      +..++.++++++....                  .+.+++++++++ .++.|++|+.++++ ++||+|++||++|++|++
T Consensus       434 ~~~g~~~~a~v~~~~~------------------~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~~l~~  493 (501)
T 3ipl_A          434 DTWGQVPKLYFVSESD------------------ISKAQLIAYLSK-HLAKYKVPKHFEKV-DTLPYTSTGKLQRNKLYR  493 (501)
T ss_dssp             TTTEEEEEEEEEESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCC--------------
T ss_pred             ccCCceEEEEEEeCCC------------------CCHHHHHHHHHh-hCccccCCCEEEEe-cccCCCCCCCEeHHHHhh
Confidence            9889999998886443                  557889999999 79999999998875 889999999999999999


Q ss_pred             HHHhh
Q 019921          322 EVMSH  326 (334)
Q Consensus       322 ~~~~~  326 (334)
                      .....
T Consensus       494 ~~~~~  498 (501)
T 3ipl_A          494 EGHHH  498 (501)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            87654

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2e-49  Score=374.98  Aligned_cols=290  Identities=21%  Similarity=0.289  Sum_probs=245.7

Q ss_pred             ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .++..|+++++.+.   +++..+++.++++++|+++++|+++..++.......  ..++++|.+++||+++++++.+++.
T Consensus       204 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~~~G~~l~~~~~~~~~  281 (511)
T 3e7w_A          204 PCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ--DLLPHADTFMFCGEVLPVSVAKALL  281 (511)
T ss_dssp             HHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHH
T ss_pred             HHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccc--ccCCcccEEEEecCCCCHHHHHHHH
Confidence            46788999999876   689999999999999999999999998876543322  3578999999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +.|+++++++.||+||++..++..........                  .....++|.|+|+++++|+|++     .|+
T Consensus       282 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~  343 (511)
T 3e7w_A          282 ERFPKAKIFNTYGPTEATVAVTSVEITNDVIS------------------RSESLPVGFAKPDMNIFIMDEEGQPLPEGE  343 (511)
T ss_dssp             HHCTTCEEEECCCCGGGSSCSEEEEECHHHHT------------------TCSSCCCBEECTTCEEEEECTTSCBCCTTC
T ss_pred             HHCCCcEEEeCcccchheeeeeEEeccccccc------------------cCCcCCCcceeCCCEEEEECCCCCCCCCCC
Confidence            99999999999999999977665433211000                  0123369999999999999976     678


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG  230 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~  230 (334)
                      .|||+|+|++++.||+++++.+...|   ++..||+|||+|++ +||+++++||.||+||++|++|+|.+||++|.+||.
T Consensus       344 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~  422 (511)
T 3e7w_A          344 KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQY  422 (511)
T ss_dssp             CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTT
T ss_pred             ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCC
Confidence            89999999999999999999888776   23348999999999 589999999999999999999999999999999999


Q ss_pred             cceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCC
Q 019921          231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS  310 (334)
Q Consensus       231 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~  310 (334)
                      |.+++|++++++..++.+++++++.+....            ......+++++++++ .++.|++|+.++++ ++||+|+
T Consensus       423 V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~------------~~~~~~~~l~~~l~~-~L~~~~~P~~~~~v-~~lP~t~  488 (511)
T 3e7w_A          423 VRSAVVIPYQPNGTVEYLIAAIVPEEHEFE------------KEFQLTSAIKKELAA-SLPAYMIPRKFIYQ-DHIQMTA  488 (511)
T ss_dssp             EEEEEEEEECSSSSCCEEEEEEEECCCCCS------------SHHHHHHHHHHHHHH-HSCGGGSCSEEEEC-SCCCBCT
T ss_pred             cceEEEEEEcCCCCceEEEEEEEecccccc------------chhhHHHHHHHHHHh-hCchhhCCeeEEEe-ccCCCCC
Confidence            999999999988888899999988765110            011235789999999 79999999999875 8899999


Q ss_pred             CCccchHHHHHHHHhh
Q 019921          311 TGKIRRDEVRREVMSH  326 (334)
Q Consensus       311 ~GKv~r~~l~~~~~~~  326 (334)
                      +|||+|++|++.+.++
T Consensus       489 ~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          489 NGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             TSCBCHHHHHHHHHHH
T ss_pred             CcCccHHHHHhHHhhh
Confidence            9999999999998765

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.2e-49  Score=376.73  Aligned_cols=292  Identities=23%  Similarity=0.310  Sum_probs=246.7

Q ss_pred             ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .+++.|+++++.+.   +++..+++.++++++|++.++|+++..++.......  ..+++||.+++||+++++++.+++.
T Consensus       205 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~~G~~l~~~~~~~~~  282 (512)
T 3fce_A          205 PSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE--SMLPNMKTFLFCGEVLPNEVARKLI  282 (512)
T ss_dssp             HHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST--TTSTTCCEEEECSSCCCHHHHHHHH
T ss_pred             HHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc--hhCccccEEEEecCcCCHHHHHHHH
Confidence            46788999999886   789999999999999999999999988876544332  3578999999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +.|+++++++.||+||++..++..........                  .....++|.|.++++++++|++     .|+
T Consensus       283 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~  344 (512)
T 3fce_A          283 ERFPKATIMNTYGPTEATVAVTGIHVTEEVLD------------------QYKSLPVGYCKSDCRLLIMKEDGTIAPDGE  344 (512)
T ss_dssp             HHCTTCEEEEEECCGGGSSCSEEEECCHHHHH------------------HCSSCCCEEECTTCEEEEECSSSCBCCTTS
T ss_pred             HHCCCCEEEeCcccChhhhheeeEEecccccc------------------ccCCCccccccCCcEEEEECCCCCCCCCCC
Confidence            99989999999999999976664432211000                  0023358999999999999876     588


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPG  230 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~  230 (334)
                      .|||+++|++++.||+++++.+...|   ++++||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.+||+
T Consensus       345 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~  423 (512)
T 3fce_A          345 KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSY  423 (512)
T ss_dssp             CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTT
T ss_pred             eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCC
Confidence            99999999999999999999888776   56789999999999 799999999999999999999999999999999999


Q ss_pred             cceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCC
Q 019921          231 IIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS  310 (334)
Q Consensus       231 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~  310 (334)
                      |.+++|++++++..++.++++|++.+....            ......+++++++++ .++.|++|+.++++ ++||+|+
T Consensus       424 V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~------------~~~~~~~~l~~~l~~-~L~~~~~P~~~~~~-~~lP~t~  489 (512)
T 3fce_A          424 VEGAVIVPIKKGEKYDYLLAVVVPGEHSFE------------KEFKLTSAIKKELNE-RLPNYMIPRKFMYQ-SSIPMTP  489 (512)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEECSCCCS------------SHHHHHHHHHHHHHT-TSCGGGSCSEEEEC-SCCCBCT
T ss_pred             cceEEEEEEecCCCceEEEEEEecCCcccc------------chhhhHHHHHHHHHh-hCchhcCCeEEEEe-cccCCCC
Confidence            999999999998888999999988764110            011234679999999 79999999998775 8899999


Q ss_pred             CCccchHHHHHHHHhhcc
Q 019921          311 TGKIRRDEVRREVMSHLK  328 (334)
Q Consensus       311 ~GKv~r~~l~~~~~~~~~  328 (334)
                      +||++|++|++.+.+.-+
T Consensus       490 ~GKi~R~~L~~~~~~~~~  507 (512)
T 3fce_A          490 NGKVDRKKLLSEVTALEH  507 (512)
T ss_dssp             TSSBCHHHHHHHHHC---
T ss_pred             CcChHHHHHHhhhhhccc
Confidence            999999999999887543

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=3.6e-50  Score=382.49  Aligned_cols=294  Identities=24%  Similarity=0.355  Sum_probs=212.3

Q ss_pred             ceeeccceEEEcCC-CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIPK-FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .+++.|+++++.+. +++..+++.++++++|+++++|+++..|++.......  .+++||.+++||+++++++.+++ +.
T Consensus       239 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~-~~  315 (541)
T 1v25_A          239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH--RLKTLRRLVVGGSAAPRSLIARF-ER  315 (541)
T ss_dssp             HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC--CCSSCCEEEECSSCCCHHHHHHH-HH
T ss_pred             HHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC--cchhccEEEECCCCCCHHHHHHH-HH
Confidence            45788999999874 7999999999999999999999999999887654432  57899999999999999999999 66


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCC-------Cc
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGS-------SH  153 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~-------g~  153 (334)
                      + ++++++.||+||++..++......... .          .++.. ......++|.|+|+++++|+|++.       ++
T Consensus       316 ~-g~~~~~~YG~TE~~~~~~~~~~~~~~~-~----------~~~~~-~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~  382 (541)
T 1v25_A          316 M-GVEVRQGYGLTETSPVVVQNFVKSHLE-S----------LSEEE-KLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA  382 (541)
T ss_dssp             T-TCEEEEEEECGGGSSEEEECCCCGGGT-T----------SCHHH-HHHHHTSCBEECTTCEEEEECTTSCBCCSSSCC
T ss_pred             h-CCceeecccccccccceeccccccccc-c----------cCccc-cccccCCCCCcCCCcEEEEECCCCCCCCCCCCc
Confidence            7 899999999999987655432211000 0          00000 000234699999999999999751       35


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcce
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIG  233 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  233 (334)
                      .|||+|+|++++.||+++++.+...|..+|||+|||+|++++||+++|+||.||+||++|++|+|.+||++|.+||+|.+
T Consensus       383 ~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~  462 (541)
T 1v25_A          383 LGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKE  462 (541)
T ss_dssp             CEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC---------
T ss_pred             ceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceE
Confidence            89999999999999999999999888879999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCc
Q 019921          234 IVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGK  313 (334)
Q Consensus       234 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GK  313 (334)
                      ++|++++++..++.++++|++...                 ..+.+++++++++..++.|++|+.++++ ++||+|++||
T Consensus       463 a~Vv~~~~~~~~~~~~a~vv~~~~-----------------~~~~~~l~~~~~~~~L~~~~~P~~i~~v-~~lP~t~~GK  524 (541)
T 1v25_A          463 AAVVAIPHPKWQERPLAVVVPRGE-----------------KPTPEELNEHLLKAGFAKWQLPDAYVFA-EEIPRTSAGK  524 (541)
T ss_dssp             -CEEEEECSSSSEEEEECC------------------------------------CCCTTTSCSBC--------------
T ss_pred             EEEEEecCCCcCceEEEEEEECCC-----------------CCCHHHHHHHHHhccCccccCCcEEEEe-CCCCCCCccC
Confidence            999999999888889999886521                 1334667777777459999999998765 7899999999


Q ss_pred             cchHHHHHHHHhhccc
Q 019921          314 IRRDEVRREVMSHLKS  329 (334)
Q Consensus       314 v~r~~l~~~~~~~~~~  329 (334)
                      ++|++|++.+.+.+++
T Consensus       525 i~r~~L~~~~~~~~~~  540 (541)
T 1v25_A          525 FLKRALREQYKNYYGG  540 (541)
T ss_dssp             -CCTTHHHHSTTSSCC
T ss_pred             eeHHHHHHHHHHhhCC
Confidence            9999999998877654

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=2.2e-49  Score=373.94  Aligned_cols=278  Identities=26%  Similarity=0.396  Sum_probs=227.6

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhcc-ccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKK-TWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++.+.+++..+++.+ ++++|+++++|+++..+++...... ....++++|.+++||+++++++.+++.+.
T Consensus       217 ~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~  295 (505)
T 3nyq_A          217 GPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAA  295 (505)
T ss_dssp             HHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHH
T ss_pred             HHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHh
Confidence            467899999999999999999999 8899999999999999987543221 11235789999999999999999999998


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC--------CC
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG--------SS  152 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~--------~g  152 (334)
                      + ++++++.||+||++..++......                       ....++|+|+++++++++|++        .|
T Consensus       296 ~-~~~~~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g  351 (505)
T 3nyq_A          296 T-GRRVIERYGMTETLMNTSVRADGE-----------------------PRAGTVGVPLPGVELRLVEEDGTPIAALDGE  351 (505)
T ss_dssp             H-SCCCEEEEEETTTEEEEECCTTSC-----------------------CCTTCCCEECTTCEEEEC-----CCCCCCSC
T ss_pred             c-CCeeecccchhhcccccccCCCCC-----------------------CCCCCcccCCCCCEEEEECCCCCCcccCCCC
Confidence            8 899999999999986544322111                       023369999999999999875        27


Q ss_pred             ceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeecc-CceeeeCceeeChHHHHHHHhcCCCc
Q 019921          153 HVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR-NGRIKSGGENVYPEEVEAVLLQHPGI  231 (334)
Q Consensus       153 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v  231 (334)
                      +.|||+|+|++++.||+++++.+...|..++||+|||+|++++||+++++||. ||+||++|++|+|.+||++|.+||+|
T Consensus       352 ~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V  431 (505)
T 3nyq_A          352 SVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEV  431 (505)
T ss_dssp             CCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTE
T ss_pred             ceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCc
Confidence            88999999999999999999999999988999999999999999999999998 59999999999999999999999999


Q ss_pred             ceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCC
Q 019921          232 IGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTST  311 (334)
Q Consensus       232 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~  311 (334)
                      .+++|++.+++..++.++++|++.+..               .....++|++++++ .++.|++|+.++++ ++||+|++
T Consensus       432 ~~a~Vv~~~~~~~g~~l~a~vv~~~~~---------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~  494 (505)
T 3nyq_A          432 REAAVTGEPDPDLGERIVAWIVPADPA---------------APPALGTLADHVAA-RLAPHKRPRVVRYL-DAVPRNDM  494 (505)
T ss_dssp             EEEEEEEEEETTTEEEEEEEEEESSTT---------------SCCCHHHHHHHHHH-HTCGGGSCSEEEEC-SCCCC---
T ss_pred             cEEEEEeeECCCCCcEEEEEEEECCCC---------------CCCCHHHHHHHHHh-hCCCCcCccEEEEE-CCCCCCCC
Confidence            999999999998899999999987531               12456889999999 79999999998775 88999999


Q ss_pred             CccchHHHHH
Q 019921          312 GKIRRDEVRR  321 (334)
Q Consensus       312 GKv~r~~l~~  321 (334)
                      ||++|++|++
T Consensus       495 GKi~r~~L~~  504 (505)
T 3nyq_A          495 GKIMKRALNR  504 (505)
T ss_dssp             ----------
T ss_pred             cCeeHHhhcc
Confidence            9999999986

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.2e-48  Score=377.49  Aligned_cols=286  Identities=24%  Similarity=0.365  Sum_probs=250.7

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .+++.|+++++.+..++..+++.++++++|++.++|+++..+++..........+++||.+++||+++++++.+++.+.+
T Consensus       247 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~  326 (617)
T 3rg2_A          247 GVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI  326 (617)
T ss_dssp             HHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred             HHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh
Confidence            46788999999998999999999999999999999999999988766544434688999999999999999999999998


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeecccc-CcceEEEeeCC-----CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~-----~g~~G  155 (334)
                       ++++++.||+||++..++.......                      ....++|.|+ ++.+++++|++     .|+.|
T Consensus       327 -~~~~~~~YG~tE~~~~~~~~~~~~~----------------------~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~G  383 (617)
T 3rg2_A          327 -GCQLQQVFGMAEGLVNYTRLDDSAE----------------------KIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG  383 (617)
T ss_dssp             -CSEEEEEEEETTEEEEECCTTSCHH----------------------HHHHCCCEESCTTCEEEEECTTSCBCCTTCCE
T ss_pred             -CCcEEEEeccCcceeecccCCCccc----------------------ccccCCCccCCCCceEEEECCCCCCCCCCCce
Confidence             8999999999998854332211100                      0223589997 78899999876     68889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+|+|+++++||+++++.+...|..++||+|||++++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus       384 El~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~  463 (617)
T 3rg2_A          384 RLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAA  463 (617)
T ss_dssp             EEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEE
T ss_pred             EEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEE
Confidence            99999999999999999999999989999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++.+++..++.++++++..+.                  ....++++++++..++.|++|..++++ ++||+|++||++
T Consensus       464 vv~~~~~~~~~~~~a~vv~~~~------------------~~~~~l~~~l~~~~lp~~~vP~~~~~v-~~lP~t~~GKid  524 (617)
T 3rg2_A          464 LVSMEDELMGEKSCAYLVVKEP------------------LRAVQVRRFLREQGIAEFKLPDRVECV-DSLPLTAVGKVD  524 (617)
T ss_dssp             EEEEEETTTEEEEEEEEEESSC------------------CCHHHHHHHHHTTTCCGGGSCSEEEEC-SCCCBCTTSSBC
T ss_pred             EEeccCcccCeeEEEEEEeCCC------------------CCHHHHHHHHHhCCCccccCCcEEEEe-cccCCCCCCCCc
Confidence            9999998888899999987764                  456788899888569999999999875 889999999999


Q ss_pred             hHHHHHHHHhhccc
Q 019921          316 RDEVRREVMSHLKS  329 (334)
Q Consensus       316 r~~l~~~~~~~~~~  329 (334)
                      |++|++++.+....
T Consensus       525 R~~L~~~~~~~~~~  538 (617)
T 3rg2_A          525 KKQLRQWLASRASA  538 (617)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccc
Confidence            99999988776543

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=3.3e-49  Score=383.57  Aligned_cols=299  Identities=19%  Similarity=0.260  Sum_probs=241.6

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      .+|++|++++++++    +++..+++.|+++++|+++++|++++.|.+.........++++||.+++||+++++++++++
T Consensus       325 ~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~  404 (663)
T 1ry2_A          325 GPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY  404 (663)
T ss_dssp             HHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred             HHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHH
Confidence            56889999999874    58999999999999999999999999887654322222357899999999999999999999


Q ss_pred             HhhCC--CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeC-C----
Q 019921           78 TNSFP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSD-G----  150 (334)
Q Consensus        78 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~-~----  150 (334)
                      .+.++  ++++++.||+||+++.++........                    ..+++++|.|+++++++|+|+ +    
T Consensus       405 ~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~--------------------~~~~gs~G~p~~g~~v~i~d~~~g~~v  464 (663)
T 1ry2_A          405 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVT--------------------PMKPGSASFPFFGIDAVVLDPNTGEEL  464 (663)
T ss_dssp             HHTTSCSSSCEEECBCCTTTCSCSEECCTTTCC--------------------CCCTTCCCEECTTCCEEEECSSSTTCE
T ss_pred             HHHhCCCCceEEEeECCccccCeeeccCCCCCc--------------------ccCCCccccCcCCCeEEEEcCCCCCcC
Confidence            99883  28999999999998765543221100                    013457999999999999997 3    


Q ss_pred             -C-CceeEEEEcC--cchhhhhhhcccCCCCccC--CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHH
Q 019921          151 -S-SHVGRILTRG--AHVMLRYWDQFLAKPSVST--GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV  224 (334)
Q Consensus       151 -~-g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~  224 (334)
                       . |+.|||+++|  |+++.|||++++.+...+.  .+|||+|||+|++++||+++|+||.||+||++|++|+|.+||++
T Consensus       465 ~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~  544 (663)
T 1ry2_A          465 NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAA  544 (663)
T ss_dssp             ECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHH
T ss_pred             CCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHH
Confidence             2 7889999999  5899999999987665543  37899999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccC
Q 019921          225 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRK  304 (334)
Q Consensus       225 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~  304 (334)
                      |.+||.|.+++|++.+++..++.++++|+++++.....      ...+......++|++++++ .++.|++|+.++++ +
T Consensus       545 l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~------~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v-~  616 (663)
T 1ry2_A          545 IIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST------ATDDELQDIKKHLVFTVRK-DIGPFAAPKLIILV-D  616 (663)
T ss_dssp             HHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------------CCSHHHHHHHHHHH-HTCTTTSCSEEEEC-S
T ss_pred             HHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccc------ccchhHHHHHHHHHHHHHH-hCCCCcCCeEEEEc-C
Confidence            99999999999999999888889999999876521000      0000011235789999999 79999999998875 7


Q ss_pred             CccCCCCCccchHHHHHHHHhhcc
Q 019921          305 PFPLTSTGKIRRDEVRREVMSHLK  328 (334)
Q Consensus       305 ~lP~t~~GKv~r~~l~~~~~~~~~  328 (334)
                      .||+|++|||+|+.|++.+.++++
T Consensus       617 ~lP~T~sGKi~R~~L~~~~~~~~~  640 (663)
T 1ry2_A          617 DLPKTRSGKIMRRILRKILAGESD  640 (663)
T ss_dssp             CCCBCTTSCBCHHHHHHSCC----
T ss_pred             CCCCCCccCchHHHHHHHHcCCCC
Confidence            899999999999999998877643

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1e-48  Score=374.29  Aligned_cols=286  Identities=22%  Similarity=0.270  Sum_probs=242.8

Q ss_pred             ceeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            2 AMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         2 ~~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      .++..|+++++.+  .+++..+++.++++++|+++++|+++..+.+..   .....+++||.+++||+++++++++++.+
T Consensus       268 ~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~~~~lr~i~~gGe~l~~~~~~~~~~  344 (570)
T 3c5e_A          268 EPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LSSYKFPHLQNCVTVGESLLPETLENWRA  344 (570)
T ss_dssp             HHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---TTTCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred             HHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---ccccccccceEEEEcCCcCCHHHHHHHHH
Confidence            3567899999886  689999999999999999999999999887642   12224789999999999999999999999


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                      .+ ++++++.||+||++..++......                       ...+++|.|+++++++|+|++     .|+.
T Consensus       345 ~~-g~~i~~~YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~  400 (570)
T 3c5e_A          345 QT-GLDIRESYGQTETGLTCMVSKTMK-----------------------IKPGYMGTAASCYDVQIIDDKGNVLPPGTE  400 (570)
T ss_dssp             HH-SCCCEEEEEETTTEEEEECCTTSC-----------------------CCTTCCCEECTTCCEEEECTTSCBCCTTCC
T ss_pred             Hh-CCchhhccchhhcccceecCcccc-----------------------cCCCcccccCCCceEEEECCCCCCCCCCCC
Confidence            88 899999999999986544322110                       023369999999999999976     5788


Q ss_pred             eEEEEc-----CcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCC
Q 019921          155 GRILTR-----GAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHP  229 (334)
Q Consensus       155 Gel~v~-----g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  229 (334)
                      |||+++     |++++.||+++++.+...|. ++||+|||++++++||+++|.||.||+||++|++|+|.+||++|.+||
T Consensus       401 GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p  479 (570)
T 3c5e_A          401 GDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHP  479 (570)
T ss_dssp             EEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTST
T ss_pred             CeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence            999999     99999999999998888774 789999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC
Q 019921          230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT  309 (334)
Q Consensus       230 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t  309 (334)
                      +|.+++|++.+++..++.++++|++.+.....           ......++|++++++ .++.|++|+.++++ ++||+|
T Consensus       480 ~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~-----------~~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t  546 (570)
T 3c5e_A          480 AVVETAVISSPDPVRGEVVKAFVVLASQFLSH-----------DPEQLTKELQQHVKS-VTAPYKYPRKIEFV-LNLPKT  546 (570)
T ss_dssp             TEEEEEEEEEEETTTEEEEEEEEEECGGGTTS-----------CHHHHHHHHHHHHHH-HSCGGGSCSEEEEE-SCCCBC
T ss_pred             CcceEEEEeeeCCCCCeEEEEEEEECCcccCc-----------chHHHHHHHHHHHHh-hCccccCCcEEEEe-ccCCCC
Confidence            99999999999988889999999887641100           011346789999998 79999999998875 789999


Q ss_pred             CCCccchHHHHHHHHhhcc
Q 019921          310 STGKIRRDEVRREVMSHLK  328 (334)
Q Consensus       310 ~~GKv~r~~l~~~~~~~~~  328 (334)
                      ++||++|++|++.+...-.
T Consensus       547 ~~GKi~R~~L~~~~~~~s~  565 (570)
T 3c5e_A          547 VTGKIQRAKLRDKEWKMSG  565 (570)
T ss_dssp             TTCCBCHHHHHHHHTC---
T ss_pred             CCcCCcHHHHHHHHHhhhh
Confidence            9999999999998765443

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.2e-50  Score=386.00  Aligned_cols=282  Identities=25%  Similarity=0.416  Sum_probs=156.3

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|+++++|+++..+++.......  .+++||.+++||+++++++.+++.+.|
T Consensus       254 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~i~~gG~~l~~~~~~~~~~~~  331 (544)
T 3o83_A          254 GVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD--QIQSLKLLQVGGASFPESLARQVPEVL  331 (544)
T ss_dssp             HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH--HHTTCCEEEEESSCCCHHHHTHHHHHH
T ss_pred             HHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc--cCCcceEEEEcCCCCCHHHHHHHHHHh
Confidence            457789999999999999999999999999999999999999887654332  478999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeecccc-CcceEEEeeCC-----CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPA-PHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~~~~-----~g~~G  155 (334)
                       ++++++.||+||++..++.......                      ....++|.|+ ++++++++|++     .|+.|
T Consensus       332 -~~~~~~~YG~TE~~~~~~~~~~~~~----------------------~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~G  388 (544)
T 3o83_A          332 -NCKLQQVFGMAEGLVNYTRLDDSDE----------------------QIFTTQGRPISSDDEIKIVDEQYREVPEGEIG  388 (544)
T ss_dssp             -CSEEEEEEECTTSCEEECCTTSCHH----------------------HHHHCCCEESCTTCEEEEECTTSCBCCTTCCE
T ss_pred             -CCcEEeeeccccccceeecCCCchh----------------------hccCCCceecCCCcEEEEECCCCCCCCCCCee
Confidence             8999999999998754332211100                      0234689996 89999999876     68889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+++|++++.||+++++.+...|+.++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus       389 El~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~  468 (544)
T 3o83_A          389 MLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAA  468 (544)
T ss_dssp             EEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------
T ss_pred             EEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEE
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++++++..++.++++|++.+.                 ......+++++++..++.|++|+.++++ ++||+|++||++
T Consensus       469 vv~~~~~~~g~~~~a~vv~~~~-----------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~lP~t~~GKi~  530 (544)
T 3o83_A          469 LVAIVDEQFGEKSCAFIVSRNP-----------------ELKAVVLRRHLMELGIAQYKLPDQIKLI-ESLPLTAVGKVD  530 (544)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeccCCCCCceEEEEEEeCCC-----------------CCCHHHHHHHHHhCCCCcccCCcEEEEe-ccCCCCCCCCCc
Confidence            9999999888899999887653                 1345667778777469999999998775 789999999999


Q ss_pred             hHHHHHHHHhh
Q 019921          316 RDEVRREVMSH  326 (334)
Q Consensus       316 r~~l~~~~~~~  326 (334)
                      |++|++++.+.
T Consensus       531 r~~L~~~~~~~  541 (544)
T 3o83_A          531 KKQLRSILNTS  541 (544)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhhc
Confidence            99999988753

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=3.8e-49  Score=374.00  Aligned_cols=296  Identities=21%  Similarity=0.291  Sum_probs=237.4

Q ss_pred             eeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            3 MLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         3 ~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      ++..|+++++.+.   .++..+++.++++++|++.++|+++..+........  ..+++||.+++||+++++++.+++.+
T Consensus       209 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~  286 (521)
T 3l8c_A          209 TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQ--AKMPALTHFYFDGEELTVSTARKLFE  286 (521)
T ss_dssp             HHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCST--TTCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred             HHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccc--ccCccceEEEEecccCCHHHHHHHHH
Confidence            5778999999876   489999999999999999999999988766543322  35789999999999999999999999


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                      .|+++++++.||+||++..++..........                  .....++|.|+|+++++|+|++     .|+.
T Consensus       287 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~  348 (521)
T 3l8c_A          287 RFPSAKIINAYGPTEATVALSAIEITREMVD------------------NYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ  348 (521)
T ss_dssp             HCTTCEEEEEECCGGGSSCSEEEEECHHHHH------------------HCSSCEEEEECTTSCEEEECTTSCBCCTTCC
T ss_pred             HCCCceEEeCcCccHHhhhhceeeccccccc------------------CCCccccccccCCCEEEEECCCcCCCCCCCc
Confidence            9989999999999999976664432211000                  0023369999999999999976     5788


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCcc---CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCc
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVS---TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGI  231 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v  231 (334)
                      |||+|+|++++.||+++++.+...|   ++++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||.|
T Consensus       349 GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V  428 (521)
T 3l8c_A          349 GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV  428 (521)
T ss_dssp             EEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTE
T ss_pred             eEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCc
Confidence            9999999999999999999888776   5779999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEecCc-ceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCC
Q 019921          232 IGIVVVGIANAR-LTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTS  310 (334)
Q Consensus       232 ~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~  310 (334)
                      .+++|++.+++. .++.++++|+++++.....+         ......++|++++++ .++.|++|+.++++ ++||+|+
T Consensus       429 ~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~---------~~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~lP~t~  497 (521)
T 3l8c_A          429 ASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFD---------RELELTKAIKASVKD-HMMSYMMPSKFLYR-DSLPLTP  497 (521)
T ss_dssp             EEEEEECCCSSSCC---CEEEEEECTTSGGGCS---------SHHHHHHHHHHHSGG-GSCGGGSCSEEEEC-SSCCBCT
T ss_pred             ceEEEEEeecCCCCceEEEEEEEecCccccccc---------cchhhHHHHHHHHHh-hCccccCCeEEEEe-cccCCCC
Confidence            999999887653 45778899988875211100         011236789999999 79999999998875 8899999


Q ss_pred             CCccchHHHHHHHHhhccc
Q 019921          311 TGKIRRDEVRREVMSHLKS  329 (334)
Q Consensus       311 ~GKv~r~~l~~~~~~~~~~  329 (334)
                      +|||+|++|++++.++-++
T Consensus       498 ~GKidr~~L~~~~~~~~~~  516 (521)
T 3l8c_A          498 NGKIDIKTLINEVNNREGH  516 (521)
T ss_dssp             TSSBCHHHHHHHTC-----
T ss_pred             CcCccHHHHhhhhhcCCcc
Confidence            9999999999998776544

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.3e-49  Score=402.42  Aligned_cols=294  Identities=29%  Similarity=0.406  Sum_probs=162.5

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......  ++++||.+++||+++++++.+++.+.|
T Consensus       291 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~~~~gg~~l~~~~~~~~~~~~  368 (979)
T 3tsy_A          291 CGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY--DLSSIRVVKSGAAPLGKELEDAVNAKF  368 (979)
T ss_dssp             HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTS--CCTTCCEEEESSCCCCSSHHHHHHHHC
T ss_pred             HHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCC--CccceEEEEEcCCCCCHHHHHHHHHHC
Confidence            357789999999999999999999999999999999999999877654332  588999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G  155 (334)
                      |++++++.||+||++.+++..........                  ....+++|.|+++++++|+|++      .|+.|
T Consensus       369 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~------------------~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~G  430 (979)
T 3tsy_A          369 PNAKLGQGYGMTEAGPVLAMSLGFAKEPF------------------PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPG  430 (979)
T ss_dssp             TTCEEEECEECGGGCSEEEECGGGSSSCC------------------CCCTTCCCEECSSCEEEEECTTSCCBCCTTCCE
T ss_pred             CCCeEEeeechhhhhHHHHhCCCCCCCcc------------------ccCCCCcCcccCCcEEEEEeCCCCCCCCCCCcc
Confidence            99999999999999976554322111100                  0133469999999999999954      57889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+|+|++++.||+++++.+...|+.++||+|||++++++||+++|+||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus       431 El~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~  510 (979)
T 3tsy_A          431 EICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVA  510 (979)
T ss_dssp             EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------
T ss_pred             EEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++++++..++.++++|+..++                ...+.+++++++++ .++.|++|+.++++ ++||+|++|||+
T Consensus       511 Vv~~~~~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~l~~-~l~~~~~p~~i~~v-~~lP~t~~GKi~  572 (979)
T 3tsy_A          511 VVAMKEEAAGEVPVAFVVKSKD----------------SELSEDDVKQFVSK-QVVFYKRINKVFFT-ESIPKAPSGKIL  572 (979)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEecccCCCcEEEEEEEECCC----------------CCCCHHHHHHHHHH-hcccccCCeEEEEe-CCcCcCCCCCee
Confidence            9999998888899999987664                12456789999999 79999999988765 789999999999


Q ss_pred             hHHHHHHHHhhcccCCCC
Q 019921          316 RDEVRREVMSHLKSLPSN  333 (334)
Q Consensus       316 r~~l~~~~~~~~~~l~~~  333 (334)
                      |++|++++.+.+.+.|.+
T Consensus       573 r~~L~~~~~~~~~~~~~~  590 (979)
T 3tsy_A          573 RKDLRAKLANGLGSGMAS  590 (979)
T ss_dssp             ----------------CC
T ss_pred             HHHHHHHHHhhcCCcccc
Confidence            999999999988877754

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.1e-49  Score=381.52  Aligned_cols=280  Identities=24%  Similarity=0.282  Sum_probs=151.8

Q ss_pred             ceeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            2 AMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         2 ~~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      .+++.|+++++.+  .+++..+++.++++++|++.++|+++..+.+....     .+++||.+++||+++++++.+++.+
T Consensus       274 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~lr~~~~gG~~l~~~~~~~~~~  348 (570)
T 4gr5_A          274 GALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----AFEGVRYAITGGEPASVPHVAKARR  348 (570)
T ss_dssp             HHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----GGTTCSEEEEESSCCCHHHHHHHHH
T ss_pred             HHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----hCCCceEEEEecccCCHHHHHHHHH
Confidence            4678899999987  47899999999999999999999999998865322     3778999999999999999999999


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                      .++++++++.||+||++++.+..........                   ....++|+|+++++++|+|++     .|+.
T Consensus       349 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~  409 (570)
T 4gr5_A          349 DHPALRLGNGYGPAESMGFTTHHAVVAGDLS-------------------GTALPIGVPLAGKRAYVLDDDLKPAANGAL  409 (570)
T ss_dssp             HCTTCEEEEEECCGGGCSCSEEEECCGGGTT-------------------SSSCCCBEECTTEEEEEECTTSCBCCTTCE
T ss_pred             hCCCcEEEEeechhhheeeeeeeeecccccC-------------------CCccccceeeCCCEEEEECCCCCCCCCCCc
Confidence            9889999999999999876654432211100                   023359999999999999976     6888


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCccC--------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVST--------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~~--------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      |||+|+|++++.||+++++.+...|.        +++||+|||+|++|+||+++|+||.||+||++|++|+|.+||++|.
T Consensus       410 GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~  489 (570)
T 4gr5_A          410 GELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV  489 (570)
T ss_dssp             EEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------
T ss_pred             EEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh
Confidence            99999999999999999988776663        3489999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      +||.|.+++|++.+++..++.++++|++....               ...+.++|++++++ .++.|++|+.++++ ++|
T Consensus       490 ~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------------~~~~~~~l~~~l~~-~l~~~~~P~~i~~v-~~l  552 (570)
T 4gr5_A          490 GHPAVRQAAVLAQDSRLGDKQLVAYVVAERAD---------------APPDAAELRRHVAE-ALPAYMVPVECVPV-DEL  552 (570)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCcceEEEEEeeCCCCCeEEEEEEEecCCC---------------CCcCHHHHHHHHHh-hCccccCCcEEEEc-ccC
Confidence            99999999999999888888899998876530               12456789999999 79999999998765 789


Q ss_pred             cCCCCCccchHHHHHH
Q 019921          307 PLTSTGKIRRDEVRRE  322 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~  322 (334)
                      |+|++|||+|++|++.
T Consensus       553 P~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          553 PRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ----------------
T ss_pred             CCCCCcCcchHhhhcc
Confidence            9999999999999875

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=3.2e-48  Score=370.36  Aligned_cols=271  Identities=25%  Similarity=0.339  Sum_probs=233.9

Q ss_pred             ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .+++.|+++++.+.   .++..+++.++++++|+++++|+++..+...        .+++||.+++||+++++++++++.
T Consensus       243 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~lr~~~~gG~~l~~~~~~~~~  314 (563)
T 1amu_A          243 MALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSATSPSLVNKWK  314 (563)
T ss_dssp             HHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------TCCSCSEEEEESSCCCHHHHHHHT
T ss_pred             HHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------ccccccEEEEEEecCCHHHHHHHH
Confidence            46789999999876   6899999999999999999999998766321        367899999999999999999997


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +   .+++++.||+||++..++.........                    ....++|+|+|+++++|+|++     .|+
T Consensus       315 ~---~~~~~~~YG~TE~~~~~~~~~~~~~~~--------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~g~  371 (563)
T 1amu_A          315 E---KVTYINAYGPTETTICATTWVATKETI--------------------GHSVPIGAPIQNTQIYIVDENLQLKSVGE  371 (563)
T ss_dssp             T---TSEEEEEECCGGGSSCSEEEECCSSCC--------------------CSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred             h---CCeEEEEECcCHHhHhheeeecccccC--------------------CCCCcccceeCCCEEEEECCCcCCCCCCC
Confidence            7   478999999999987655443221110                    023469999999999999976     578


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccC------CCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhc
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVST------GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ  227 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~------~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~  227 (334)
                      .|||+|+|++++.||+++++.+...|.      +++||+|||+|++++||+++|+||.||+||++|++|+|.+||++|.+
T Consensus       372 ~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~  451 (563)
T 1amu_A          372 AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLK  451 (563)
T ss_dssp             EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTT
T ss_pred             cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHh
Confidence            999999999999999999987766652      45799999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc
Q 019921          228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP  307 (334)
Q Consensus       228 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP  307 (334)
                      ||+|.+++|++.+++..++.++++|+....                  .+.++|++++++ .++.|++|+.++++ ++||
T Consensus       452 ~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~------------------~~~~~l~~~l~~-~L~~y~~P~~i~~v-~~lP  511 (563)
T 1amu_A          452 HMYISETAVSVHKDHQEQPYLCAYFVSEKH------------------IPLEQLRQFSSE-ELPTYMIPSYFIQL-DKMP  511 (563)
T ss_dssp             STTEEEEEEEEEECTTSCEEEEEEEEESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCC
T ss_pred             CCCcceEEEEEeecCCCCeEEEEEEEeCCC------------------CCHHHHHHHHHh-hCchhhCCcEEEEe-cccC
Confidence            999999999999998888889999886543                  456789999999 79999999998875 7899


Q ss_pred             CCCCCccchHHHHHHH
Q 019921          308 LTSTGKIRRDEVRREV  323 (334)
Q Consensus       308 ~t~~GKv~r~~l~~~~  323 (334)
                      +|++||++|++|++..
T Consensus       512 ~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          512 LTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             BCTTSSBCGGGSCCCC
T ss_pred             CCCCcChhHHhcCCcc
Confidence            9999999999998653

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=8.7e-48  Score=370.73  Aligned_cols=278  Identities=20%  Similarity=0.318  Sum_probs=227.1

Q ss_pred             ceeeccceEEEcC--CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            2 AMLMVGACHVFIP--KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         2 ~~l~~G~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      .+|++|+++++.+  .+++..+++.++++++|+++++|+++..+.+...     ..+++||.+++||+++++++.+++.+
T Consensus       224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~l~~~~~~~~~~  298 (620)
T 4dg8_A          224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDILSVPHVRRALL  298 (620)
T ss_dssp             HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSCCCHHHHHHHHH
T ss_pred             HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCcCCHHHHHHHHH
Confidence            5788999999964  5899999999999999999999999999876422     24778999999999999999999988


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCc
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSH  153 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~  153 (334)
                      .++++++++.||+||++.+++..........                   ....++|+|+++++++|+|++      .|+
T Consensus       299 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~-------------------~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~  359 (620)
T 4dg8_A          299 RHPRLHLVNGYGPTENTTFTCCHVVTDDDLE-------------------EDDIPIGKAIAGTAVLLLDEHGQEIAEPDR  359 (620)
T ss_dssp             HCTTCEEEEEECCGGGCSCSEEEECCTGGGG-------------------SSSCCCBEECTTEEEEEECTTSCBCCSSSC
T ss_pred             hCCCeEEEeeEchhhhhhheEEEeccccccC-------------------CCCCCceecccCcEEEEECccCCCCCCCCC
Confidence            8889999999999999976654433221110                   023469999999999999975      477


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCccCCC-------ceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVSTGE-------VWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~-------~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .|||+|+|+++++||+++++.+...|..+       +||+|||++++++||+++|+||.||+||++|++|+|.+||++|.
T Consensus       360 ~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~  439 (620)
T 4dg8_A          360 AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR  439 (620)
T ss_dssp             CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH
T ss_pred             ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH
Confidence            89999999999999999999888777432       79999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      +||+|.+++|++.+++..++.+++++. ...                  .    +.+.+++ .++.|++|..++++ ++|
T Consensus       440 ~~p~V~~a~Vv~~~~~~~~~lv~~~~~-~~~------------------~----~~~~l~~-~Lp~y~~P~~~~~v-~~l  494 (620)
T 4dg8_A          440 RQPGILDCALLVRERNGVKQLLCAWTG-KAD------------------A----SPQALLR-QLPTWQRPHACVRV-EAL  494 (620)
T ss_dssp             TSTTEEEEEEEEEEETTEEEEEEEEEE-CTT------------------C----CCHHHHH-HSCGGGSCSEEEEC-SSC
T ss_pred             hCCCccEEEEEEEeCCCceEEEEEEec-ChH------------------H----HHHHHHH-hChhhcCCcEEEEE-CcC
Confidence            999999999999988765554544442 221                  1    1233555 59999999999875 889


Q ss_pred             cCCCCCccchHHHHHHHHhhcc
Q 019921          307 PLTSTGKIRRDEVRREVMSHLK  328 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~~~~  328 (334)
                      |+|++||++|++|++.+.+.++
T Consensus       495 P~t~~GKidR~~L~~~~~~~~~  516 (620)
T 4dg8_A          495 PLTAHGKLDRAALLRRLEEPLE  516 (620)
T ss_dssp             CCC----CCHHHHHHHTCSCC-
T ss_pred             CCCcccCHhHHHHhhccccccc
Confidence            9999999999999988765543

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=2.4e-47  Score=362.20  Aligned_cols=277  Identities=23%  Similarity=0.358  Sum_probs=230.9

Q ss_pred             ceeeccceEEEc-CCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|++++++ +.+++..+++.++++++|+++++|+++..+++.......  ...++|.+++||+++++++.+++.+.
T Consensus       246 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~~~~lr~~~~gGe~l~~~~~~~~~~~  323 (529)
T 2v7b_A          246 FPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPAR--ADVAIRICTSAGEALPREIGERFTAH  323 (529)
T ss_dssp             HHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCG--GGCCCCEEEECSSCCCHHHHHHHHHH
T ss_pred             HHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccc--cCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            357789999988 568999999999999999999999999888765332221  12379999999999999999999999


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCcee
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVG  155 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~G  155 (334)
                      | ++++++.||+||++.+++.......                       ..+++|.|+++++++++|++     .|+.|
T Consensus       324 ~-g~~i~~~YG~TE~~~~~~~~~~~~~-----------------------~~~~~G~p~~~~~~~i~d~~g~~~~~g~~G  379 (529)
T 2v7b_A          324 F-GCEILDGIGSTEMLHIFLSNRAGAV-----------------------EYGTTGRPVPGYEIELRDEAGHAVPDGEVG  379 (529)
T ss_dssp             H-SCCEEEEEECTTTSSEEEECCTTCC-----------------------CTTSCCEECTTCEEEEECTTSCBCCTTSCE
T ss_pred             h-CCceeeeEchhhcCceeeccccCCC-----------------------ccCCcccCCCCCEEEEECCCCCCCCCCCcc
Confidence            8 8999999999999765443321110                       22369999999999999975     57889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+|+|++++.||+++++.+...|. ++||+|||++++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus       380 El~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~  458 (529)
T 2v7b_A          380 DLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAA  458 (529)
T ss_dssp             EEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEE
T ss_pred             EEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEE
Confidence            9999999999999999998887774 789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++. ++..++.++++|++.+...  .           .....++|++++++ .++.|++|+.++++ ++||+|++||++
T Consensus       459 vv~~-~~~~~~~~~a~vv~~~~~~--~-----------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~  522 (529)
T 2v7b_A          459 VVGV-DHGGLVKTRAFVVLKREFA--P-----------SEILAEELKAFVKD-RLAPHKYPRDIVFV-DDLPKTATGKIQ  522 (529)
T ss_dssp             EEEE-EETTEEEEEEEEEECTTCC--C-----------CHHHHHHHHHHHHT-TSCTTTSCSEEEEE-SCCCBCTTSCBC
T ss_pred             EEEe-cCCCceEEEEEEEecCCCC--c-----------chhHHHHHHHHHHh-hcchhhCCeEEEEe-ccCCCCCccchh
Confidence            9999 6666788899998776410  0           01134679999999 89999999999876 789999999999


Q ss_pred             hHHHHH
Q 019921          316 RDEVRR  321 (334)
Q Consensus       316 r~~l~~  321 (334)
                      |++|++
T Consensus       523 r~~L~~  528 (529)
T 2v7b_A          523 RFKLRE  528 (529)
T ss_dssp             HHHHHC
T ss_pred             HHhHhh
Confidence            999985

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=9.5e-48  Score=363.37  Aligned_cols=276  Identities=26%  Similarity=0.441  Sum_probs=146.4

Q ss_pred             eeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCC
Q 019921            4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK   83 (334)
Q Consensus         4 l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~   83 (334)
                      ++.|++.++...+++..+++.++++++|+++++|+++..+++....    ..++++|.++.+|++   ++.+.+.+.+++
T Consensus       223 ~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~l~~lr~~~~~g~~---~~~~~~~~~~~~  295 (509)
T 3ivr_A          223 QQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAP----AQLASLRAVTGLDTP---ETIERFEATCPN  295 (509)
T ss_dssp             HHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCG----GGGTTCCEEEEECCH---HHHHHHHHHCTT
T ss_pred             HHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccc----cchhhhheecccCCh---HHHHHHHHhcCC
Confidence            3455666666689999999999999999999999999999877521    247789999999987   899999999999


Q ss_pred             CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEEE
Q 019921           84 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRIL  158 (334)
Q Consensus        84 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel~  158 (334)
                      +++++.||+||++.+++.......                        ..++|.|+++++++++|++     .|+.|||+
T Consensus       296 ~~~~~~YG~TE~~~~~~~~~~~~~------------------------~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~  351 (509)
T 3ivr_A          296 ATFWATFGQSETSGLSTFAPYRDR------------------------PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIV  351 (509)
T ss_dssp             CEEEEEEEEGGGTEEEEEEEGGGS------------------------TTSCCEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred             CeEEcccCccccccccccCccccC------------------------CCcccccCCCcEEEEECCCCCCCCCCCceEEE
Confidence            999999999999976665443221                        1138999999999999976     57889999


Q ss_pred             EcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeecc--CceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          159 TRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRR--NGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       159 v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+|++++.||+++++.+...|. ++||+|||+|++++||+++++||.  ||+||++|++|+|.+||++|.+||+|.+++|
T Consensus       352 v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~v  430 (509)
T 3ivr_A          352 LRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVV  430 (509)
T ss_dssp             EESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC---------------------------------
T ss_pred             EecCCccccccCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEE
Confidence            9999999999999999988884 899999999999999999999999  9999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.+++..++.++++|++.++                ...+.+++++++++ .++.|++|+.++++ ++||+|++|||+|
T Consensus       431 v~~~~~~~~~~~~a~v~~~~~----------------~~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKidr  492 (509)
T 3ivr_A          431 IGVPDPQWSEAIKAVCVCKPG----------------ESIAADALAEFVAS-LIARYKKPKHVVFV-EALPKDAKGAIDR  492 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeccccccCcEEEEEEEeCCC----------------CCCCHHHHHHHHHh-hCcccCCCcEEEEe-cCCCCCCCCCccH
Confidence            999998888899999987764                12456789999999 79999999988775 8899999999999


Q ss_pred             HHHHHHHHhhccc
Q 019921          317 DEVRREVMSHLKS  329 (334)
Q Consensus       317 ~~l~~~~~~~~~~  329 (334)
                      ++|++++.+.-++
T Consensus       493 ~~Lr~~~~~~~~~  505 (509)
T 3ivr_A          493 AAVKTAHGQEGHH  505 (509)
T ss_dssp             -------------
T ss_pred             HHHHHHHhhcccc
Confidence            9999998876543

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=8.4e-46  Score=383.66  Aligned_cols=282  Identities=22%  Similarity=0.303  Sum_probs=242.3

Q ss_pred             ceeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHH
Q 019921            2 AMLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEAT   78 (334)
Q Consensus         2 ~~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~   78 (334)
                      .+|++|+++++.+.   .++..+++.++++++|+++++|+++..+.+...     ..+++||.+++|||++++++++.+.
T Consensus       667 ~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~-----~~~~~lr~~~~gGe~l~~~~~~~~~  741 (1304)
T 2vsq_A          667 ASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE-----DWMKGLRCILFGGERASVPHVRKAL  741 (1304)
T ss_dssp             HHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-----HHHHTCSEEEEESSCCCHHHHHHHH
T ss_pred             HHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-----hcCCCccEEEEecCCCCHHHHHHHH
Confidence            56889999999874   789999999999999999999999998876421     1256899999999999999999999


Q ss_pred             hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCc
Q 019921           79 NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSH  153 (334)
Q Consensus        79 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~  153 (334)
                      +.++++++++.||+||++.+++.........                   .....++|+|+++++++|+|++     .|+
T Consensus       742 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~-------------------~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~  802 (1304)
T 2vsq_A          742 RIMGPGKLINCYGPTEGTVFATAHVVHDLPD-------------------SISSLPIGKPISNASVYILNEQSQLQPFGA  802 (1304)
T ss_dssp             HHHCTTCEEEEECCGGGSSCSEEEECCCCCS-------------------SCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred             HhCCCCEEEEeEChhHHhHHheeeeccCccc-------------------cCCCCCCceeeCCCEEEEECCCcCCCCCCC
Confidence            9887789999999999997766544322100                   0023369999999999999976     688


Q ss_pred             eeEEEEcCcchhhhhhhcccCCCCcc------CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhc
Q 019921          154 VGRILTRGAHVMLRYWDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQ  227 (334)
Q Consensus       154 ~Gel~v~g~~~~~gy~~~~~~~~~~~------~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~  227 (334)
                      .|||+|+|+++++||+++++.|...|      .+++||+|||+|++++||.++|+||.||+||++|++|.|.+||++|.+
T Consensus       803 ~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~  882 (1304)
T 2vsq_A          803 VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQE  882 (1304)
T ss_dssp             CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred             ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHh
Confidence            99999999999999999998887666      346799999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCcc
Q 019921          228 HPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFP  307 (334)
Q Consensus       228 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP  307 (334)
                      +|+|.+++|++.++...++.++++++....                  .+.+++++++++ .||.|++|..++++ ++||
T Consensus       883 ~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~------------------~~~~~l~~~l~~-~Lp~ymvP~~~~~l-~~lP  942 (1304)
T 2vsq_A          883 YPGVKDAVVVADRHESGDASINAYLVNRTQ------------------LSAEDVKAHLKK-QLPAYMVPQTFTFL-DELP  942 (1304)
T ss_dssp             SSSCCEEEEEEECCSSSCCEEEEEEECSSS------------------SCHHHHHHHHHH-HSCGGGSCSEEEEE-SCCC
T ss_pred             CCCCceEEEEEEecCCCCEEEEEEEeCCCC------------------CCHHHHHHHHHH-hChHhhhccEEEEe-cccC
Confidence            999999999999888888889999886543                  456789999999 79999999998875 7899


Q ss_pred             CCCCCccchHHHHHHHHhhc
Q 019921          308 LTSTGKIRRDEVRREVMSHL  327 (334)
Q Consensus       308 ~t~~GKv~r~~l~~~~~~~~  327 (334)
                      +|++|||+|++|.+......
T Consensus       943 ~t~~GKidR~~L~~~~~~~~  962 (1304)
T 2vsq_A          943 LTTNGKVNKRLLPKPDQDQL  962 (1304)
T ss_dssp             CCSSCSSCCSCCCCCCGGGG
T ss_pred             CCCCcccCHhhcCCcchhhh
Confidence            99999999999876544433

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=6.4e-46  Score=354.94  Aligned_cols=291  Identities=18%  Similarity=0.257  Sum_probs=145.5

Q ss_pred             ceeeccceEEEcCCCC-HHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhh
Q 019921            2 AMLMVGACHVFIPKFE-SKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNS   80 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~-~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~   80 (334)
                      .++..|+++++.+.+. +..+++.++++++|+++++|+++..+...    .  ..+++||.+++||+++++++.+++.+.
T Consensus       244 ~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~--~~~~~lr~~~~gG~~l~~~~~~~~~~~  317 (562)
T 3ite_A          244 LAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----P--EDAPHLVYLGVGGEKMTPRTQQIWSSS  317 (562)
T ss_dssp             HHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----G--GGSTTCCEEEEESSCCCHHHHHHHTTC
T ss_pred             HHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----c--cccCceEEEEEecCCCCHHHHHHHhhC
Confidence            3567899998877643 57788999999999999999987665221    1  247899999999999999999999998


Q ss_pred             CCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCce
Q 019921           81 FPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHV  154 (334)
Q Consensus        81 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~  154 (334)
                      + ++++++.||+||++..++........                      ...++|.|+++++++++|++      .|+.
T Consensus       318 ~-~~~~~~~YG~TE~~~~~~~~~~~~~~----------------------~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~  374 (562)
T 3ite_A          318 D-RVALVNVYGPTEVTIGCSAGRILPDS----------------------DTRCIGHPLGDSVAHVLAPGSNEHVKKGMA  374 (562)
T ss_dssp             S-SCEEEEEECCGGGCSCSEEEECCTTS----------------------CTTEEEEECTTCEEEEECTTSSCBCCTTSC
T ss_pred             C-CcEEEEeeccchheeeeeeeeecCCC----------------------CCccccccCCCCeEEEEeCCCCCCCCCCCc
Confidence            7 89999999999998766544332211                      23369999999999999865      5778


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCcc-CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcC-CCcc
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVS-TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH-PGII  232 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~  232 (334)
                      |||+|+|++++.||+++++.+...+ ++++||+|||+|++|+||+++|+||.||+||++|++|+|.+||++|.++ +.+.
T Consensus       375 GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~  454 (562)
T 3ite_A          375 GELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDI  454 (562)
T ss_dssp             EEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC----------------------------
T ss_pred             eEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCce
Confidence            9999999999999999999887654 3445999999999999999999999999999999999999999999998 7888


Q ss_pred             eEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCC-CC
Q 019921          233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLT-ST  311 (334)
Q Consensus       233 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t-~~  311 (334)
                      +++|++.+++..++..++.++............   ...+......++|++++++ .|+.|++|+.++++ ++||+| ++
T Consensus       455 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~-~L~~y~~P~~i~~v-~~lP~t~~~  529 (562)
T 3ite_A          455 DVVTLLLNHPGTSKQFLVSFVASSGAAVRGELR---WINENYKEINNSLRQACEQ-TLPAYMVPDFIIPI-SFIPLRDTS  529 (562)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEecCCCCcceEEEEEEeccccccccccc---ccccchhhHHHHHHHHHHh-hCCcccCCcEEEEe-ccCCCCCCC
Confidence            899998888876766665555443311110000   0001122345689999999 79999999998765 789998 89


Q ss_pred             CccchHHHHHHHHhh
Q 019921          312 GKIRRDEVRREVMSH  326 (334)
Q Consensus       312 GKv~r~~l~~~~~~~  326 (334)
                      ||++|++|++++.+.
T Consensus       530 GKi~r~~L~~~~~~~  544 (562)
T 3ite_A          530 AKTDAKALEHMFHTL  544 (562)
T ss_dssp             ---------------
T ss_pred             CcchHHHHHHHHhcc
Confidence            999999999998754

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=3.2e-44  Score=345.17  Aligned_cols=306  Identities=20%  Similarity=0.232  Sum_probs=231.9

Q ss_pred             ceeeccceEEEcCCC----CHHHHHHHHHhhcceEEEechHHHHHHHHHHhhc-cccCCCCCccEEEeccCCCCHHHHHH
Q 019921            2 AMLMVGACHVFIPKF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRVK-KTWKGRDSVKKILNGGGGLPSELMKE   76 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~----~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~-~~~~~~~~lr~i~~gG~~l~~~~~~~   76 (334)
                      .+++.|+++++++.+    ++..+++.++++++|++.++|+++..+.+..... ....++++||.+++||+++++++.++
T Consensus       229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~  308 (590)
T 3kxw_A          229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH  308 (590)
T ss_dssp             HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred             HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence            357789999998864    8999999999999999999999999988764322 22235789999999999999999999


Q ss_pred             HHhhCC-----CCceEcccccccccccccccccCCCCCC----CCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEe
Q 019921           77 ATNSFP-----KAKLISAYGMTETSSSLTFMTLYDPTLE----TPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVC  147 (334)
Q Consensus        77 ~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~  147 (334)
                      +.+.|+     ++++++.||+||++..++..........    .............+.........++|.|+++  ++|+
T Consensus       309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~  386 (590)
T 3kxw_A          309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKII  386 (590)
T ss_dssp             HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEE
T ss_pred             HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEE
Confidence            998873     4589999999999987665432211000    0000000000000001111245678999998  7778


Q ss_pred             eCC------CCceeEEEEcCcchhhhhhhcccCCCCccCC--------CceEeccceEEEcCCCcEEEeeccCceeeeCc
Q 019921          148 SDG------SSHVGRILTRGAHVMLRYWDQFLAKPSVSTG--------EVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGG  213 (334)
Q Consensus       148 ~~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~--------~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G  213 (334)
                      |++      .|+.|||+|+|++++.||+++++.+...|.+        .+||+|||+|+++ ||+++|+||.||+||++|
T Consensus       387 d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G  465 (590)
T 3kxw_A          387 DPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYG  465 (590)
T ss_dssp             CTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHH
T ss_pred             cCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECC
Confidence            865      5788999999999999999999988777642        2399999999999 999999999999999999


Q ss_pred             eeeChHHHHHHH-hcCCCcc--eEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCC
Q 019921          214 ENVYPEEVEAVL-LQHPGII--GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNL  290 (334)
Q Consensus       214 ~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  290 (334)
                      ++|+|.+||++| ..+|.|.  +++|++++++. ++.+++++++.+...              .....+++.+.+++ .+
T Consensus       466 ~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~--------------~~~~~~~l~~~l~~-~l  529 (590)
T 3kxw_A          466 KNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM--------------DDVAQDNLFNEIFE-LV  529 (590)
T ss_dssp             HTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC--------------CHHHHHHHHHHHHH-HH
T ss_pred             EecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccc--------------cchhHHHHHHHHHH-HH
Confidence            999999999999 7889998  79999998876 677888888776410              01345667777777 45


Q ss_pred             CC-cccce-EEEec-cCCccCCCCCccchHHHHHHHHhh
Q 019921          291 TG-FKAPR-LFVLW-RKPFPLTSTGKIRRDEVRREVMSH  326 (334)
Q Consensus       291 ~~-~~~p~-~~~~~-~~~lP~t~~GKv~r~~l~~~~~~~  326 (334)
                      +. +++|. .+.++ .++||+|++|||+|++|++++.+.
T Consensus       530 ~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~  568 (590)
T 3kxw_A          530 YENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK  568 (590)
T ss_dssp             HHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence            53 67764 33332 368999999999999999998764

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=5.4e-43  Score=315.98  Aligned_cols=256  Identities=19%  Similarity=0.240  Sum_probs=208.5

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+..  ...++.++++++|+++++|+++..+++......   .+++||.+++||+++++++.+++++. 
T Consensus        98 ~~l~~g~~~~~~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~---~l~~lr~v~~gG~~l~~~~~~~~~~~-  171 (358)
T 4gs5_A           98 RGMELDWELTVTEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSATSG---QVDRLGKVLLGGAPVNHALAMQISDL-  171 (358)
T ss_dssp             HHHHHTCEEEEECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTGG---GGGGGCSEEECSSCCCHHHHHHHHTC-
T ss_pred             HHHHhCcEEEecCcc--ccHHHHHHHhCCeEEEcChHHHHHhhccccccc---cCCcceEEEEcccCCCchheeccccc-
Confidence            357789998887642  234677899999999999999999887654333   47899999999999999999999874 


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCCCCceeEEEEcC
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRG  161 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~g~~Gel~v~g  161 (334)
                       ++++++.||+||++..++.......                       ..+.+|.+.|++.+.+.+.     ||++++|
T Consensus       172 -~~~~~~~YG~TEt~~~~~~~~~~~~-----------------------~~g~~~~~~pgv~~~~~~~-----Gel~~~g  222 (358)
T 4gs5_A          172 -AMPVYQSYGMTETVSHVALKALNGP-----------------------EASELYVFLPGIQYGVDER-----GCLHISG  222 (358)
T ss_dssp             -SSCEEEEEECGGGSSEEEEEECSST-----------------------TCCSCEEECTTCEEEECTT-----SEEEEES
T ss_pred             -CceEEeccccccccceeeccccccc-----------------------ccceeeccCCCeEEEecCc-----CceEEec
Confidence             8999999999999976665443321                       2335889999999987554     9999998


Q ss_pred             cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh---cCCCcceEEEE-
Q 019921          162 AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL---QHPGIIGIVVV-  237 (334)
Q Consensus       162 ~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-  237 (334)
                      +.                ..++||+|||++++|+|| ++++||.||+||++|++|+|.+||++|.   .||.|.+++|+ 
T Consensus       223 ~~----------------~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~  285 (358)
T 4gs5_A          223 AV----------------TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCW  285 (358)
T ss_dssp             GG----------------GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             cc----------------ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEE
Confidence            53                246899999999999988 6778999999999999999999998774   57999998776 


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +.+++..++.++++|+....                 ....++|++++++ .|+.|++|+.++++ ++||+|++|||+|+
T Consensus       286 ~~~d~~~ge~~~a~v~~~~~-----------------~~~~~~l~~~l~~-~L~~~~~P~~i~~v-~~lP~t~~GKi~R~  346 (358)
T 4gs5_A          286 WEPDAKLGQKLVLVIENAMP-----------------EALTERLTAEIRS-RVSTYENPKHIYFA-KAFAKTQTDKIDKR  346 (358)
T ss_dssp             EEEETTTEEEEEEEEESCCC-----------------HHHHHHHHHHHHH-HSCGGGSCSCEEEE-SSCCBCTTSCBCHH
T ss_pred             ecCCccCCEEEEEEEECCCC-----------------CcCHHHHHHHHHh-hCCCCCCceEEEEE-CCcCCCCCCChhHH
Confidence            67788888889998876553                 2455789999999 79999999998875 78999999999999


Q ss_pred             HHHHHHHhhcc
Q 019921          318 EVRREVMSHLK  328 (334)
Q Consensus       318 ~l~~~~~~~~~  328 (334)
                      +|++++++..+
T Consensus       347 ~L~~~l~e~~~  357 (358)
T 4gs5_A          347 ATFQKLSDSSN  357 (358)
T ss_dssp             HHHHHTC----
T ss_pred             HHHHHhhhhcC
Confidence            99999877543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=3.9e-40  Score=305.44  Aligned_cols=262  Identities=16%  Similarity=0.201  Sum_probs=207.1

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+..++..+++.|+++++|+++++|+++..|++..........+++||.+++||+++++++.+++++.|
T Consensus       151 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~  230 (436)
T 3qov_A          151 GAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML  230 (436)
T ss_dssp             HHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH
T ss_pred             HHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh
Confidence            35678999999988999999999999999999999999999998876655433478999999999999999999999999


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G  155 (334)
                       ++++++.||+||+++.++.......                         ...+.|.+++.++++|++      .|+.|
T Consensus       231 -g~~v~~~YG~TE~~~~~~~~~~~~~-------------------------~g~~~~~~~~~v~i~d~~~g~~~~~g~~G  284 (436)
T 3qov_A          231 -NVKAYNSFGMTEMNGPGVAFECQEQ-------------------------NGMHFWEDCYLVEIIDPETGEPVPEGEIG  284 (436)
T ss_dssp             -TSEEEEEEEEGGGTEEEEEEECTTC-------------------------SSEEECTTTEEEEEECTTTCSBCSTTCCE
T ss_pred             -CccEEecCcchhhcCCeeEEecCCC-------------------------CeeEEccCceEEEEEECCCCCCCCCCCce
Confidence             9999999999999654332222111                         026777889999999954      67889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCC------c---EEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGG------N---VWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      ||+|+|.            +...+ ..+||+|||+++++++|      +   +++.||.||+||++|++|+|.+||++|.
T Consensus       285 el~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~  351 (436)
T 3qov_A          285 ELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV  351 (436)
T ss_dssp             EEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT
T ss_pred             EEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH
Confidence            9999982            22333 57899999999999998      5   6999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCc-ccceEEEeccC-
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWRK-  304 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~~-  304 (334)
                      +||+|.+++|++.+++..++.++++|++. +....+            ....+++.+.+++ .++.+ ++|..+.++ + 
T Consensus       352 ~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~------------~~~~~~l~~~l~~-~l~~~~~~p~~i~~v-~~  416 (436)
T 3qov_A          352 QFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDN------------YIELEKIRRDIIR-QLKDEILVTPKVKLV-KK  416 (436)
T ss_dssp             TCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCC------------HHHHHHHHHHHHH-HHHHHHSSCCEEEEE-CT
T ss_pred             hCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cccccc------------hhhHHHHHHHHHH-HHHHhcCCceEEEEe-CC
Confidence            99999999999999888888999999987 411110            1224566677777 56666 788777665 5 


Q ss_pred             -CccCCCCCccchHH
Q 019921          305 -PFPLTSTGKIRRDE  318 (334)
Q Consensus       305 -~lP~t~~GKv~r~~  318 (334)
                       +||+|+ ||++|..
T Consensus       417 ~~lP~t~-GKi~R~~  430 (436)
T 3qov_A          417 GSLPQSE-GKAVRVK  430 (436)
T ss_dssp             TCCC--------CEE
T ss_pred             CcccCcC-CcceEEE
Confidence             899999 9999864

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=2.2e-40  Score=307.67  Aligned_cols=267  Identities=15%  Similarity=0.162  Sum_probs=211.9

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      ++..|+++++++.+++..+++.|+++++|+++++|+++..|++..........+++||.+++||+++++++.+++++.| 
T Consensus       158 ~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-  236 (443)
T 2y4o_A          158 AERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-  236 (443)
T ss_dssp             HHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-
T ss_pred             HHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-
Confidence            5678999999888899999999999999999999999999988765443311247899999999999999999999999 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGR  156 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Ge  156 (334)
                      ++++++.||+||+++.++.......                       .. ..+.|.+++.++++|++      .|+.||
T Consensus       237 g~~v~~~YG~TE~~g~~~~~~~~~~-----------------------~~-g~~~~~~~~~~~i~d~~~g~~~~~G~~Ge  292 (443)
T 2y4o_A          237 GIDALDIYGLSEVMGPGVACECVET-----------------------KD-GPVIWEDHFYPEIIDPVTGEVLPDGSQGE  292 (443)
T ss_dssp             TCEEEEEEEETTTTEEEEEEECTTT-----------------------CC-SEEECTTTEEEEEECTTTCCBCCTTCCEE
T ss_pred             CcCEEeccCchhhcCCeEEeccCCC-----------------------CC-ceEEccCCeEEEEEcCCCCCCCCCCCceE
Confidence            8999999999998543222211110                       00 14556788999999854      578899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCC-CcE-----EEeeccCceeeeCceeeChHHHHHHHhcCCC
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG-GNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHPG  230 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~-G~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~  230 (334)
                      |+++|.            +...+ +.+||+|||+++++++ |++     ++.||.||+||++|++|+|.+||++|.++|+
T Consensus       293 l~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~  359 (443)
T 2y4o_A          293 LVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPL  359 (443)
T ss_dssp             EEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTT
T ss_pred             EEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcC
Confidence            999972            22333 5689999999999999 987     8999999999999999999999999999999


Q ss_pred             cceEEEEEEecCcceeEEEEEEEecc--CccccccccccccchhhhhccHHHHHHHHHhcCCCCc-ccceEEEecc-CCc
Q 019921          231 IIGIVVVGIANARLTEMVVACVRLRE--SWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPF  306 (334)
Q Consensus       231 v~~~~v~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~l  306 (334)
                      |.++++++++++..++.++++|++.+  +..  +           ...+.+++++.+++ .++.+ ++|..+.++. ++|
T Consensus       360 V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~--~-----------~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~l  425 (443)
T 2y4o_A          360 LSGQFQITLSRDGHMDRLDLAVELRSEAAAS--V-----------TDGERAALARELQH-RIKTMVGVSSGVTVLAAGGI  425 (443)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEECHHHHTT--C-----------CHHHHHHHHHHHHH-HHHHHTCCCCEEEEECTTCS
T ss_pred             cCccEEEEEecCCCCceEEEEEEECCccccc--c-----------hhhHHHHHHHHHHH-HHHHHhCCceEEEEeCCCcc
Confidence            99999999988777788999988765  200  0           01334667778877 57665 5887766543 589


Q ss_pred             cCCCCCccchHHHHH
Q 019921          307 PLTSTGKIRRDEVRR  321 (334)
Q Consensus       307 P~t~~GKv~r~~l~~  321 (334)
                      |+|++||++|+..++
T Consensus       426 P~t~~GKi~r~~~~r  440 (443)
T 2y4o_A          426 PATATGKARRVIDRR  440 (443)
T ss_dssp             CCCTTSCCCSEEECC
T ss_pred             cCccCCcceEEEecc
Confidence            999999999975443

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=2.1e-39  Score=300.64  Aligned_cols=264  Identities=11%  Similarity=0.122  Sum_probs=210.5

Q ss_pred             ceeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhC
Q 019921            2 AMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSF   81 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~   81 (334)
                      .++..|+++++.+.+++..+++.|+++++|+++++|+++..|++..........+++||.+++||+++++++.+++.+.|
T Consensus       155 ~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~  234 (437)
T 2y27_A          155 GAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM  234 (437)
T ss_dssp             HHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH
T ss_pred             HHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH
Confidence            35678999998888899999999999999999999999999988765433311247899999999999999999999988


Q ss_pred             CCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCcee
Q 019921           82 PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVG  155 (334)
Q Consensus        82 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~G  155 (334)
                       ++++++.||+||+++.++........                      .  ..+.|.+++.++++|++      .|+.|
T Consensus       235 -g~~v~~~YG~TE~~g~~~~~~~~~~~----------------------~--g~~~~~~~~~~~i~d~~~g~~~~~g~~G  289 (437)
T 2y27_A          235 -GIDAVDIYGLSEVMGPGVASECVETK----------------------D--GPTIWEDHFYPEIIDPETGEVLPDGELG  289 (437)
T ss_dssp             -TSEEEEEEEETTTTEEEEEECCTTTC----------------------S--SCEECTTTEEEEEECTTTCCBCCTTCCE
T ss_pred             -CcCEEecCCchhhcCCeeEEecCCCC----------------------C--ceeEccCceEEEEEcCCCCCCCCCCCcc
Confidence             89999999999984331211111100                      0  14557789999999854      57889


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC-CCcE-----EEeeccCceeeeCceeeChHHHHHHHhcCC
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD-GGNV-----WLVGRRNGRIKSGGENVYPEEVEAVLLQHP  229 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~-~G~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  229 (334)
                      ||+++|.            +...+ .++||+|||++++++ +|++     ++.||.||+|+++|++|+|.+||++|.+||
T Consensus       290 el~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p  356 (437)
T 2y27_A          290 ELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQR  356 (437)
T ss_dssp             EEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCT
T ss_pred             EEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCc
Confidence            9999972            23333 578999999999999 6986     899999999999999999999999999999


Q ss_pred             CcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCc-ccceEEEecc-CCcc
Q 019921          230 GIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGF-KAPRLFVLWR-KPFP  307 (334)
Q Consensus       230 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~~~~~~-~~lP  307 (334)
                      +|.+++|++++++..++.++++|++.++..  +           ...+.+++++.+++ .++.+ .+|..+.++. ++||
T Consensus       357 ~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~--~-----------~~~~~~~l~~~l~~-~l~~~~~~p~~v~~v~~~~lP  422 (437)
T 2y27_A          357 ALAPHYQIVLTKEGPLDVLTLNVEPCPETA--P-----------DTAAIQVAKQALAY-DIKSLIGVTAVINVLPVNGIE  422 (437)
T ss_dssp             TBCSCCEEEEEEETTEEEEEEEECBCTTTT--T-----------CHHHHHHHHHHHHH-HHHHHHCCCEEEEECCTTCSC
T ss_pred             CcCccEEEEEeecCCCceEEEEEEECCCcc--c-----------hhhhHHHHHHHHHH-HHHHhcCCceEEEEeCCCCcc
Confidence            999999999888777888999998775410  0           01234667788888 57776 5887776653 5899


Q ss_pred             CCCCCccchHH
Q 019921          308 LTSTGKIRRDE  318 (334)
Q Consensus       308 ~t~~GKv~r~~  318 (334)
                      +|+ ||++|..
T Consensus       423 ~t~-GKi~r~~  432 (437)
T 2y27_A          423 RSV-GKARRVV  432 (437)
T ss_dssp             CCS-SSCCCEE
T ss_pred             CCC-CcceEEE
Confidence            999 9999974

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.95  E-value=6.6e-29  Score=232.73  Aligned_cols=200  Identities=17%  Similarity=0.260  Sum_probs=149.0

Q ss_pred             ceeeccceEEEcCCC----CHHHHHHHHHhhcceEEEechHHHHHHHHHHhh--ccccCCCCCccEEEeccCCCCHHHHH
Q 019921            2 AMLMVGACHVFIPKF----ESKSALEAVEQHCVTSLITVPAIMADLATLIRV--KKTWKGRDSVKKILNGGGGLPSELMK   75 (334)
Q Consensus         2 ~~l~~G~~~v~~~~~----~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~~~~lr~i~~gG~~l~~~~~~   75 (334)
                      .+++.|+++++.+..    ++..+++.++++++| +.++|+++..++.....  ......+++||.+++||+++++++++
T Consensus       251 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~  329 (480)
T 3t5a_A          251 APILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIK  329 (480)
T ss_dssp             HHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHH
T ss_pred             HHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHH
Confidence            467889999998753    899999999999999 88999998888765321  11223688999999999999999999


Q ss_pred             HHHhhC-----CCCceEcccccccccccccccccCCCCCCCCCCC-CCcccCCCCCC-CCCCCceeeccccCcceEEEee
Q 019921           76 EATNSF-----PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQL-PQAFGNVTPNS-VHQPQGVCVGKPAPHVELKVCS  148 (334)
Q Consensus        76 ~~~~~~-----~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~g~p~~~~~~~i~~  148 (334)
                      ++.+.|     +++.+++.||+||++..++............... ....+...+.. .......++|+|++ ++++|+|
T Consensus       330 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd  408 (480)
T 3t5a_A          330 RFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD  408 (480)
T ss_dssp             HHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE
T ss_pred             HHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc
Confidence            999988     3468999999999998766544322110000000 00000000000 00114457999999 9999999


Q ss_pred             CC------CCceeEEEEcCcchhhhhhhcccCCCCccC-----------CCceEeccceEEEcCCCcEEEeec
Q 019921          149 DG------SSHVGRILTRGAHVMLRYWDQFLAKPSVST-----------GEVWLDTGDIGSIDDGGNVWLVGR  204 (334)
Q Consensus       149 ~~------~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGDl~~~~~~G~l~~~GR  204 (334)
                      ++      .|+.|||+|+|++++.||+++++.+...|.           +++||+|||+|+++ ||+++|+||
T Consensus       409 ~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          409 SDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             CCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            75      578899999999999999999998887764           56899999999997 999999998

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.79  E-value=8.9e-20  Score=164.99  Aligned_cols=167  Identities=16%  Similarity=0.224  Sum_probs=119.6

Q ss_pred             eeeccceEEEcCCCCHH-----------------------HHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCc
Q 019921            3 MLMVGACHVFIPKFESK-----------------------SALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV   59 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~-----------------------~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l   59 (334)
                      ++..|+ ++++..+++.                       .+++.++++++|+++++|+++..|++.......  .+++|
T Consensus       157 ~~~~G~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~--~~~~l  233 (369)
T 3hgu_A          157 ALRLGG-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQ--MKQSL  233 (369)
T ss_dssp             HHHTTS-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHH--HHHHC
T ss_pred             HHHcCC-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhcc--ccCCe
Confidence            356788 6666677877                       888899999999999999999998876432211  35789


Q ss_pred             cEEEeccCCCCHHHHHHHH-hhCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccc
Q 019921           60 KKILNGGGGLPSELMKEAT-NSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKP  138 (334)
Q Consensus        60 r~i~~gG~~l~~~~~~~~~-~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p  138 (334)
                      |.+++||+++++++++++. +.||++++++.||+||+++++..+...                            ++|.|
T Consensus       234 r~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~----------------------------~~G~~  285 (369)
T 3hgu_A          234 AQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT----------------------------SESQQ  285 (369)
T ss_dssp             SEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC----------------------------TTCSS
T ss_pred             eEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceeccccc----------------------------cCCCc
Confidence            9999999999999999999 999899999999999998654221110                            26777


Q ss_pred             ------cCcceEEEeeC-C-----CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCC--C-------
Q 019921          139 ------APHVELKVCSD-G-----SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDG--G-------  197 (334)
Q Consensus       139 ------~~~~~~~i~~~-~-----~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~--G-------  197 (334)
                            +|+++++|+|+ +     .|+.|||+|++....            .+  -.+|+|||+++..+.  |       
T Consensus       286 ~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~  351 (369)
T 3hgu_A          286 VIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLA  351 (369)
T ss_dssp             CEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEE
T ss_pred             ccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCcc------------cc--cccccCCceEEEecCCCCCcCcccc
Confidence                  89999999997 3     688999999873211            11  135899999987553  2       


Q ss_pred             cEEEeeccCceeeeCce
Q 019921          198 NVWLVGRRNGRIKSGGE  214 (334)
Q Consensus       198 ~l~~~GR~~d~i~~~G~  214 (334)
                      .+..++|.++..++.|.
T Consensus       352 ~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          352 DIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEECC-----------
T ss_pred             cceeccccCCCceeeec
Confidence            24566777777777664

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.62  E-value=2.9e-15  Score=110.81  Aligned_cols=100  Identities=17%  Similarity=0.247  Sum_probs=70.8

Q ss_pred             eccCceeeeCceeeChHHHHHHHhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHH
Q 019921          203 GRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR  282 (334)
Q Consensus       203 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  282 (334)
                      .|.||+|+++|.+++|.+||++|.+||+|.++++++++++..++.+.++|++.+.....         ........+.++
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~---------~~~~~~l~~~i~   71 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDD---------YGRLQALTREIT   71 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCC---------HHHHHHHHHHHH
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccc---------cchhhhhHHHHH
Confidence            48999999999999999999999999999999999999999999999999887752111         111122334455


Q ss_pred             HHHHhcCCCCcccceEEEec-cCCccCCCCCccch
Q 019921          283 QHCREKNLTGFKAPRLFVLW-RKPFPLTSTGKIRR  316 (334)
Q Consensus       283 ~~~~~~~l~~~~~p~~~~~~-~~~lP~t~~GKv~r  316 (334)
                      +.+++    .+.++..+.++ .++||+| +||++|
T Consensus        72 ~~l~~----~~gv~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           72 RQLKD----EILVTPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             HHHHH----HHSSCCEEEEECTTCSCCC----CCC
T ss_pred             HHHHH----HhCCccceEEEcCCeecCC-CCCcch
Confidence            55554    12233333333 3589998 799988

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.37  E-value=2.7e-06  Score=79.88  Aligned_cols=61  Identities=13%  Similarity=0.082  Sum_probs=51.2

Q ss_pred             CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC----CCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .|+.+|+++++.+   |.              -.|++||+.+.+.    ..++.|+||.+|++.+.|++++..+||+++.
T Consensus       383 ~G~~YelViTt~~---GL--------------~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~  445 (581)
T 4eql_A          383 LGCTYEPVVTNFA---GL--------------YRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVS  445 (581)
T ss_dssp             TTCEEEEEEECSS---SC--------------CSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHH
T ss_pred             CCceEEEEEeecc---ce--------------eeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHH
Confidence            7888999998743   11              1499999999875    3579999999999999999999999999998


Q ss_pred             cC
Q 019921          227 QH  228 (334)
Q Consensus       227 ~~  228 (334)
                      +.
T Consensus       446 ~a  447 (581)
T 4eql_A          446 QA  447 (581)
T ss_dssp             HC
T ss_pred             HH
Confidence            54

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.25  E-value=5.3e-05  Score=71.05  Aligned_cols=71  Identities=8%  Similarity=0.022  Sum_probs=55.2

Q ss_pred             CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC----CCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .|+.+||++++.+   |.              -.|++||..++..    ..++.|+||.++++.+.|+++++.+||+++.
T Consensus       390 ~G~~YelviTt~~---GL--------------~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~  452 (581)
T 4epl_A          390 IGEEYEVVITNYA---GL--------------YRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVE  452 (581)
T ss_dssp             TTCEEEEEEESTT---SC--------------SSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred             CCCeEEEEEeecc---ce--------------eeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHH
Confidence            6788999998743   11              1499999999864    2468999999999999999999999999987


Q ss_pred             cC------C--CcceEEEEE
Q 019921          227 QH------P--GIIGIVVVG  238 (334)
Q Consensus       227 ~~------~--~v~~~~v~~  238 (334)
                      ..      .  .|.+..+..
T Consensus       453 ~a~~~l~~~~~~l~eft~~~  472 (581)
T 4epl_A          453 SAAKRLSEEKIEVIDFSSYI  472 (581)
T ss_dssp             HHHHHHHTTTCCEEEEEEEE
T ss_pred             HHHHhhcccCCeEEEEEEec
Confidence            42      2  355665554

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.10  E-value=8.2e-06  Score=76.82  Aligned_cols=60  Identities=12%  Similarity=0.143  Sum_probs=50.4

Q ss_pred             CCceeEEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcC----CCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          151 SSHVGRILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDD----GGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       151 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .|+.+||+++..+   |+|              .|++||.++++.    ..++.|+||.++++++.|+++++.+||+++.
T Consensus       395 ~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~  457 (609)
T 4b2g_A          395 VGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVD  457 (609)
T ss_dssp             TTCEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred             CCCeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHH
Confidence            6788999998643   222              399999999873    4679999999999999999999999999987


Q ss_pred             c
Q 019921          227 Q  227 (334)
Q Consensus       227 ~  227 (334)
                      .
T Consensus       458 ~  458 (609)
T 4b2g_A          458 N  458 (609)
T ss_dssp             H
T ss_pred             H
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	5e-54
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	8e-48
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	4e-47
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-46
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-36
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-35
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-35

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  185 bits (470), Expect = 5e-54
 Identities = 62/337 (18%), Positives = 111/337 (32%), Gaps = 53/337 (15%)

Query: 1   MAMLMVGACHVFIPKFES----KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 56
              L  GA  +      +        + V++H V  L T P  +  L            R
Sbjct: 314 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 373

Query: 57  DSVKKILNGGGGLPSELMKEATNSF--PKAKLISAYGMTETSSSLTFMTLYDPTLETPGQ 114
            S++ + + G  +  E  +         K  ++  +  TET   +            PG 
Sbjct: 374 SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT--------PLPGA 425

Query: 115 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRG-----AHV 164
           +    G                +P   V+  +  +          G ++        A  
Sbjct: 426 IELKAG-------------SATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQART 472

Query: 165 MLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV 224
           +    ++F      ST +    +GD    D+ G  W+ GR +  +   G  +   E+E+ 
Sbjct: 473 LFGDHERFEQTY-FSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 531

Query: 225 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQH 284
           L+ HP I    VVGI +A   + + A V L    + S     +             +R  
Sbjct: 532 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE-------------VRNW 578

Query: 285 CREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 321
            R++ +     P +   W    P T +GKI R  +R+
Sbjct: 579 VRKE-IGPLATPDVLH-WTDSLPKTRSGKIMRRILRK 613

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  166 bits (421), Expect = 8e-48
 Identities = 74/335 (22%), Positives = 127/335 (37%), Gaps = 42/335 (12%)

Query: 1   MAMLMVGACHVFI-PKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSV 59
            A  +VGA  V   P+ +  S +E  +   VT    VP +   LA  +          ++
Sbjct: 231 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR--LKTL 288

Query: 60  KKILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAF 119
           ++++ GG   P  L+        +  +   YG+TETS  +         LE+  +  +  
Sbjct: 289 RRLVVGGSAAPRSLIARFERMGVE--VRQGYGLTETSPVVV-QNFVKSHLESLSEEEKLT 345

Query: 120 GNVTPNSVHQPQGVCVGKPAPHVELKVCSD-------GSSHVGRILTRGAHVMLRYWDQF 172
                           G P P V L+V  +           +G +  +G  +   Y+   
Sbjct: 346 LKAK-----------TGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNE 394

Query: 173 LAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGII 232
            A  S  T + +  TGDI   D+ G V +  R    IKSGGE +   ++E  L+ HP + 
Sbjct: 395 EATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVK 454

Query: 233 GIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTG 292
              VV I + +  E  +A V  R                     + E L +H  +     
Sbjct: 455 EAAVVAIPHPKWQERPLAVVVPRGE-----------------KPTPEELNEHLLKAGFAK 497

Query: 293 FKAPRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
           ++ P  +V + +  P TS GK  +  +R +  ++ 
Sbjct: 498 WQLPDAYV-FAEEIPRTSAGKFLKRALREQYKNYY 531

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  164 bits (416), Expect = 4e-47
 Identities = 75/330 (22%), Positives = 133/330 (40%), Gaps = 48/330 (14%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +  L+ G   V + +FE +  L +++ + + S + VP + +  A    + K      ++ 
Sbjct: 250 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD--LSNLH 307

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
           +I +GG  L  E+ +     F    +   YG+TET+S    + +     + PG       
Sbjct: 308 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS---AILITPEGDDKPG------- 357

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSD------GSSHVGRILTRGAHVMLRYWDQFLA 174
                         VGK  P  E KV         G +  G +  RG  +M  Y +   A
Sbjct: 358 -------------AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 404

Query: 175 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 234
             ++   + WL +GDI   D+  + ++V R    IK  G  V P E+E++LLQHP I   
Sbjct: 405 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 464

Query: 235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 294
            V G+ +    E+  A V L                     ++ + +  +   + +T  K
Sbjct: 465 GVAGLPDDDAGELPAAVVVLEHGKT----------------MTEKEIVDYVASQ-VTTAK 507

Query: 295 APRLFVLWRKPFPLTSTGKIRRDEVRREVM 324
             R  V++    P   TGK+   ++R  ++
Sbjct: 508 KLRGGVVFVDEVPKGLTGKLDARKIREILI 537

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  163 bits (414), Expect = 3e-46
 Identities = 64/339 (18%), Positives = 119/339 (35%), Gaps = 47/339 (13%)

Query: 1   MAMLMVGACHVFIPKFES----KSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGR 56
              L+ G   +      +        + +++H VT     P  +  L             
Sbjct: 301 YGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSL 360

Query: 57  DSVKKILNGGGGLPSELMKEATNSFPKAK--LISAYGMTETSSSLTFMTLYDPTLETPGQ 114
            S++ + + G  + +E+ +  +    K +  ++  Y  TE+ S L        T   PG 
Sbjct: 361 KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG- 419

Query: 115 LPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-------GRILTRGA--HVM 165
                                  P   ++  V    +          G +  + A     
Sbjct: 420 -------------------SASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFA 460

Query: 166 LRYW---DQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVE 222
              W   D++L    ++    +  TGD  + D  G +W++GR +  +   G  +   E+E
Sbjct: 461 RTIWKNHDRYLDTY-LNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE 519

Query: 223 AVLLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLR 282
           A +++ P +    VVG  +    + V A V L+    WS +  D      EL    + L 
Sbjct: 520 AAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD------ELQDIKKHLV 573

Query: 283 QHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVRR 321
              R+  +  F AP+L +      P T +GKI R  +R+
Sbjct: 574 FTVRKD-IGPFAAPKLII-LVDDLPKTRSGKIMRRILRK 610

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  135 bits (339), Expect = 2e-36
 Identities = 74/323 (22%), Positives = 128/323 (39%), Gaps = 36/323 (11%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           +A L +   +V + +F    AL+ V+Q  VTSL   P  +  LA       +    DS++
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            +   G  +P  +++      P    ++ YG TE  +SL        T            
Sbjct: 276 HVTFAGATMPDAVLETVHQHLPGE-KVNIYGTTEAMNSLYMRQPKTGT------------ 322

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHVGRILTRGAHVMLRYWDQFLAKPSVST 180
                +      V + +    V+ ++ ++G      +    +  +            +  
Sbjct: 323 ---EMAPGFFSEVRIVRIGGGVD-EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD 378

Query: 181 GEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVVGIA 240
           G  W  T D+      G V ++GR +  I SGGEN++P E+E VL   PG+  +VV+G+A
Sbjct: 379 G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436

Query: 241 NARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFV 300
           + R  + V ACV  R                    LS++ L   CR   L  FK P+ + 
Sbjct: 437 DQRWGQSVTACVVPRLGET----------------LSADALDTFCRSSELADFKRPKRYF 480

Query: 301 LWRKPFPLTSTGKIRRDEVRREV 323
                 P  +  K+ R ++ ++V
Sbjct: 481 -ILDQLPKNALNKVLRRQLVQQV 502

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  133 bits (335), Expect = 1e-35
 Identities = 70/333 (21%), Positives = 113/333 (33%), Gaps = 49/333 (14%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
           + +L  G   V  P      A   +E+  VT    VP +          ++      S++
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD--LSSLQ 301

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            +  GG    +E  +     F                   +  L DP             
Sbjct: 302 VLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV---NYTRLDDPEEIIVN------- 351

Query: 121 NVTPNSVHQPQGVCVGKP-APHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQFLA 174
                          GKP +P+ E +V  D    V     G +LTRG + +  Y+     
Sbjct: 352 -------------TQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEH 398

Query: 175 KPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGI 234
             +  T + +  TGDI  +   G + + GR   +I  GGE V  EEVE  LL HP +   
Sbjct: 399 NAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDA 458

Query: 235 VVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK 294
            +V + +  L E     +  R+                     +  L+   RE+ L  +K
Sbjct: 459 AMVSMPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGLAAYK 501

Query: 295 APRLFVLWRKPFPLTSTGKIRRDEVRREVMSHL 327
            P     + + FP T  GK+ +  +R  +   L
Sbjct: 502 IPDRVE-FVESFPQTGVGKVSKKALREAISEKL 533

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  132 bits (333), Expect = 2e-35
 Identities = 64/332 (19%), Positives = 106/332 (31%), Gaps = 63/332 (18%)

Query: 1   MAMLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVK 60
             +       +           E        ++IT+P                +   S++
Sbjct: 228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV-------HLDPERILSIQ 280

Query: 61  KILNGGGGLPSELMKEATNSFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFG 120
            ++  G      L+ +      K   I+AYG TET+   T                    
Sbjct: 281 TLITAGSATSPSLVNK---WKEKVTYINAYGPTETTICATTWV----------------- 320

Query: 121 NVTPNSVHQPQGVCVGKPAPHVELKVCSDGSSHV-----GRILTRGAHVMLRYWDQ---- 171
                       V +G P  + ++ +  +          G +   G  +   YW +    
Sbjct: 321 ---ATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELT 377

Query: 172 ---FLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH 228
              F+  P V  GE    TGD       GN+  +GR + ++K  G  V  EEVE++LL+H
Sbjct: 378 SQKFVDNPFV-PGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKH 436

Query: 229 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREK 288
             I    V    + +    + A     +                   +  E LRQ   E+
Sbjct: 437 MYISETAVSVHKDHQEQPYLCAYFVSEKH------------------IPLEQLRQFSSEE 478

Query: 289 NLTGFKAPRLFVLWRKPFPLTSTGKIRRDEVR 320
            L  +  P  F+      PLTS GKI R ++ 
Sbjct: 479 -LPTYMIPSYFI-QLDKMPLTSNGKIDRKQLP 508

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.4e-50  Score=389.83  Aligned_cols=293  Identities=19%  Similarity=0.206  Sum_probs=246.7

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      ++|++|++++++++    +++..+++.+++++||+++++|++++.|++.........++++||.+++||+++++++++++
T Consensus       315 ~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~  394 (643)
T d1pg4a_         315 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY  394 (643)
T ss_dssp             HHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHH
T ss_pred             HHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHH
Confidence            46889999999764    58899999999999999999999999998776554444568999999999999999999999


Q ss_pred             HhhCC--CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----
Q 019921           78 TNSFP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----  150 (334)
Q Consensus        78 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----  150 (334)
                      .+.++  ++++++.||+||+++.++........                     .+.+++|.|++|++++++|++     
T Consensus       395 ~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~---------------------~~~gs~G~p~~g~~v~ivd~~g~~~~  453 (643)
T d1pg4a_         395 WKKIGKEKCPVVDTWWQTETGGFMITPLPGAIE---------------------LKAGSATRPFFGVQPALVDNEGHPQE  453 (643)
T ss_dssp             HHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCC---------------------BCTTCCBSBCTTCCEEEECTTCCBCC
T ss_pred             HHHhCCCCceEEEeechhhccceEEecCCCccC---------------------CCCCccccccCCCEEEEECCCCCCCC
Confidence            99984  57899999999999765543221111                     134579999999999999877     


Q ss_pred             CCceeEEEEcC--cchhhhhhhcccCCCCcc--CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHh
Q 019921          151 SSHVGRILTRG--AHVMLRYWDQFLAKPSVS--TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLL  226 (334)
Q Consensus       151 ~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~--~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  226 (334)
                      .++.|||+|+|  ++++.+|+++++.+...+  ..+|||+|||+|++|+||+++++||+||+||++|++|+|.+||++|.
T Consensus       454 ~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~  533 (643)
T d1pg4a_         454 GATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV  533 (643)
T ss_dssp             SSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH
T ss_pred             CCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHH
Confidence            57789999999  568899999987655433  35789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCc
Q 019921          227 QHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPF  306 (334)
Q Consensus       227 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~l  306 (334)
                      +||.|.+++|++++++..++.++++|+++++....             .....+|++++++ .++++++|+.++++ ++|
T Consensus       534 ~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~-------------~~~~~~i~~~~~~-~L~~~~vP~~i~~v-~~l  598 (643)
T d1pg4a_         534 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPS-------------PELYAEVRNWVRK-EIGPLATPDVLHWT-DSL  598 (643)
T ss_dssp             HSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC-------------HHHHHHHHHHHHH-HTCGGGCCSEEEEC-SCC
T ss_pred             hCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCC-------------HHHHHHHHHHHHh-hCCcccCccEEEEE-CCC
Confidence            99999999999999998899999999998762111             1234578999999 79999999998775 789


Q ss_pred             cCCCCCccchHHHHHHHHhhcccC
Q 019921          307 PLTSTGKIRRDEVRREVMSHLKSL  330 (334)
Q Consensus       307 P~t~~GKv~r~~l~~~~~~~~~~l  330 (334)
                      |+|++|||+|++|++++..+.+++
T Consensus       599 P~T~sGKi~R~~Lr~~~~~~~~~~  622 (643)
T d1pg4a_         599 PKTRSGKIMRRILRKIAAGDTSNL  622 (643)
T ss_dssp             CBCTTSCBCHHHHHHHHHTC----
T ss_pred             CCCCCcCccHHHHHHHhcCCcccc
Confidence            999999999999999998865543

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-49  Score=381.05  Aligned_cols=302  Identities=20%  Similarity=0.264  Sum_probs=242.9

Q ss_pred             ceeeccceEEEcCC----CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHH
Q 019921            2 AMLMVGACHVFIPK----FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEA   77 (334)
Q Consensus         2 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~   77 (334)
                      ++|+.|++++++++    +++..+++.++++++|+++++|++++.|.+.........++++||.+++||+++++++++++
T Consensus       302 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~  381 (640)
T d1ry2a_         302 GPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY  381 (640)
T ss_dssp             HHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred             HHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHH
Confidence            46788999988765    48899999999999999999999999887665443344568999999999999999999999


Q ss_pred             HhhCC--CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----
Q 019921           78 TNSFP--KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----  150 (334)
Q Consensus        78 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----  150 (334)
                      .+.++  ..++++.||+||++............                    ..+++++|.|+|+++++++|++     
T Consensus       382 ~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~--------------------~~~~gs~G~p~~g~~~~i~d~~~~~~~  441 (640)
T d1ry2a_         382 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVT--------------------PMKPGSASFPFFGIDAVVLDPNTGEEL  441 (640)
T ss_dssp             HHTTSCSSSCEEECBCCTTTCSCSEECCTTTCC--------------------CCCTTCCCEECTTCCEEEECSSSTTCE
T ss_pred             HHhcCCCcceEEeeecccccccccccccCCCcC--------------------CCCCcccccccCCceEEEEeCCCCccc
Confidence            99984  35799999999999765543322211                    1144579999999999999876     


Q ss_pred             --CCceeEEEEcC--cchhhhhhhcccCCCCcc--CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHH
Q 019921          151 --SSHVGRILTRG--AHVMLRYWDQFLAKPSVS--TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAV  224 (334)
Q Consensus       151 --~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~--~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~  224 (334)
                        .++.|||++++  |+++.||+++++.+...+  +.+|||+|||+|++|+||+++|+||.||+||++|++|+|.+||++
T Consensus       442 ~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~  521 (640)
T d1ry2a_         442 NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAA  521 (640)
T ss_dssp             ECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHH
T ss_pred             CCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHH
Confidence              24469999998  689999999998877655  356999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccC
Q 019921          225 LLQHPGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRK  304 (334)
Q Consensus       225 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~  304 (334)
                      |.+||.|.+++|++++++..++.++++|++++.......      ..+......+++.+++++ .+++|++|+.++++ +
T Consensus       522 l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~------~~~~~~~l~~~l~~~~~~-~L~~~~~P~~i~~v-~  593 (640)
T d1ry2a_         522 IIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA------TDDELQDIKKHLVFTVRK-DIGPFAAPKLIILV-D  593 (640)
T ss_dssp             HHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------------CCSHHHHHHHHHHH-HTCTTTSCSEEEEC-S
T ss_pred             HHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCcccc------chHHHHHHHHHHHHHHHh-hCCCCCCceEEEEe-C
Confidence            999999999999999999889999999999876322111      111122345778899999 79999999998875 7


Q ss_pred             CccCCCCCccchHHHHHHHHhhcccCC
Q 019921          305 PFPLTSTGKIRRDEVRREVMSHLKSLP  331 (334)
Q Consensus       305 ~lP~t~~GKv~r~~l~~~~~~~~~~l~  331 (334)
                      +||+|++|||+|++||+++.++..++.
T Consensus       594 ~lP~T~sGKi~R~~Lr~~~~~~~~~~~  620 (640)
T d1ry2a_         594 DLPKTRSGKIMRRILRKILAGESDQLG  620 (640)
T ss_dssp             CCCBCTTSCBCHHHHHHSCC-------
T ss_pred             CCCCCCCcCccHHHHHHHHhCCccccC
Confidence            899999999999999999887765553

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=3.6e-47  Score=359.21  Aligned_cols=281  Identities=26%  Similarity=0.378  Sum_probs=234.7

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      .+..|+++++....+....+..+.++++|.++++|+++..++........  .++++|.+++||+++++++.+++.+.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~--~~~~l~~v~~gG~~~~~~~~~~~~~~~~  329 (541)
T d1lcia_         252 YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY--DLSNLHEIASGGAPLSKEVGEAVAKRFH  329 (541)
T ss_dssp             HHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGS--CCTTCCEEECTTCCCCHHHHHHHHHHTT
T ss_pred             ccccccccccccccccchhHHHHhhhhccccccCcccccccccccccccc--ccccceEEEecccccccccccccccccC
Confidence            34567778888888999999999999999999999999988876544333  5789999999999999999999999996


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC------CCceeE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG------SSHVGR  156 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~------~g~~Ge  156 (334)
                      ...+++.||+||+++.++.......                       ..+++|+|+|+++++|+|++      .|+.||
T Consensus       330 ~~~~~~~YG~TE~~~~~~~~~~~~~-----------------------~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Ge  386 (541)
T d1lcia_         330 LPGIRQGYGLTETTSAILITPEGDD-----------------------KPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE  386 (541)
T ss_dssp             CSCCBCEECCGGGSSCSEECCCC--------------------------CCCCBEECTTCEEEEECTTTCCBCCTTCCEE
T ss_pred             CceeeecCCccccCceEEecCcccC-----------------------CCCccccccCCCEEEEEECCCCcCCCCCCeEE
Confidence            6679999999999987665433221                       33469999999999999865      578899


Q ss_pred             EEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          157 ILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       157 l~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      |+|+|++++.||+++++.+...+.+++||+|||+++++++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|
T Consensus       387 l~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v  466 (541)
T d1lcia_         387 LCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGV  466 (541)
T ss_dssp             EEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred             EEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence            99999999999999988888778889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcc-cceEEEeccCCccCCCCCccc
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFK-APRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      ++++++..++.++++|+++++                ...+.++|++++++ .+.++. +|..++++ ++||+|++|||+
T Consensus       467 ~~~~~~~~g~~~~a~v~~~~~----------------~~~~~~~l~~~~~~-~l~~~~~~p~~i~~v-~~lP~t~~GKi~  528 (541)
T d1lcia_         467 AGLPDDDAGELPAAVVVLEHG----------------KTMTEKEIVDYVAS-QVTTAKKLRGGVVFV-DEVPKGLTGKLD  528 (541)
T ss_dssp             EEEEETTTEEEEEEEEEECTT----------------CCCCHHHHHHHHHH-HSCGGGSCTTEEEEE-SSCCC-----CC
T ss_pred             EEEECCCCCEEEEEEEEECCC----------------CCCCHHHHHHHHHH-hCCccccCCcEEEEe-CCCCcCCCcCcc
Confidence            999999999999999998775                23556789999999 576664 78877765 789999999999


Q ss_pred             hHHHHHHHHhh
Q 019921          316 RDEVRREVMSH  326 (334)
Q Consensus       316 r~~l~~~~~~~  326 (334)
                      |++|++++.+.
T Consensus       529 r~~l~~~~~~~  539 (541)
T d1lcia_         529 ARKIREILIKA  539 (541)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.8e-48  Score=366.68  Aligned_cols=288  Identities=24%  Similarity=0.340  Sum_probs=208.7

Q ss_pred             eeccceEEEcC-CCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            4 LMVGACHVFIP-KFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         4 l~~G~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +..|+++++.. .+++..++.+++++++|.+.++|+++..++........  .+++||.+++||+++++++.+++++.  
T Consensus       234 ~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~--~~~~lr~~~~gG~~~~~~~~~~~~~~--  309 (534)
T d1v25a_         234 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH--RLKTLRRLVVGGSAAPRSLIARFERM--  309 (534)
T ss_dssp             HHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC--CCSSCCEEEECSSCCCHHHHHHHHHT--
T ss_pred             eeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccc--cccceeEEEEecCCCCHHHHHHHHHh--
Confidence            44666666654 58999999999999999999999999999888766554  68999999999999999999999875  


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-------CCcee
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-------SSHVG  155 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-------~g~~G  155 (334)
                      +.++++.||+||++..++.............            .......+++|.|+|+++++|+|++       .+++|
T Consensus       310 ~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~G  377 (534)
T d1v25a_         310 GVEVRQGYGLTETSPVVVQNFVKSHLESLSE------------EEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALG  377 (534)
T ss_dssp             TCEEEEEEECGGGSSEEEECCCCGGGTTSCH------------HHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCE
T ss_pred             CCeeeeeccccccccceeecccCccccccCc------------cccccccccceeccCCcEEEEECCCCCCCCCCCCeeE
Confidence            7899999999999987765433221100000            0000133469999999999999886       36789


Q ss_pred             EEEEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEE
Q 019921          156 RILTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIV  235 (334)
Q Consensus       156 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  235 (334)
                      ||+|+|++++.||+++++.+...+..+|||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.+||+|.+++
T Consensus       378 el~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~  457 (534)
T d1v25a_         378 EVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAA  457 (534)
T ss_dssp             EEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------C
T ss_pred             EEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence            99999999999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccc
Q 019921          236 VVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIR  315 (334)
Q Consensus       236 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~  315 (334)
                      |++++++..++.++++|+++...                ....+.++.++++ .+++|++|..++++ ++||+|++|||+
T Consensus       458 v~~~~~~~~~~~l~a~vv~~~~~----------------~~~~~~~~~~~~~-~l~~~~~P~~i~~~-~~lP~t~~GKi~  519 (534)
T d1v25a_         458 VVAIPHPKWQERPLAVVVPRGEK----------------PTPEELNEHLLKA-GFAKWQLPDAYVFA-EEIPRTSAGKFL  519 (534)
T ss_dssp             EEEEECSSSSEEEEECC------------------------------------CCCTTTSCSBC---------------C
T ss_pred             EEEEECCCCCeEEEEEEEeCCCC----------------CCHHHHHHHHHHh-cCCcCCCccEEEEE-CCCCCCCCcccc
Confidence            99999998899999998876541                1222334445666 79999999998775 779999999999


Q ss_pred             hHHHHHHHHh
Q 019921          316 RDEVRREVMS  325 (334)
Q Consensus       316 r~~l~~~~~~  325 (334)
                      |++||++|.+
T Consensus       520 R~~lr~~~~~  529 (534)
T d1v25a_         520 KRALREQYKN  529 (534)
T ss_dssp             CTTHHHHSTT
T ss_pred             HHHHHHHHHh
Confidence            9999987744

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.5e-42  Score=325.39  Aligned_cols=282  Identities=24%  Similarity=0.367  Sum_probs=241.9

Q ss_pred             eeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCCC
Q 019921            4 LMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFPK   83 (334)
Q Consensus         4 l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~   83 (334)
                      +..|++++..+.+++..++..+++++++.+..+|+.+..+.........  .++++|.+++||+++++.+.+++.+.+ +
T Consensus       247 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gG~~~~~~~~~~~~~~~-~  323 (536)
T d1mdba_         247 LYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD--DLSSLQVLQVGGAKFSAEAARRVKAVF-G  323 (536)
T ss_dssp             HHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC--CCTTCCEEEEESSCCCHHHHTTHHHHT-C
T ss_pred             ccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccccc--ccCcceeEEEeccccccccccchhhcc-C
Confidence            3457788888889999999999999999999999999988877655443  578999999999999999999999999 8


Q ss_pred             CceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcce-EEEeeCC-----CCceeEE
Q 019921           84 AKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVE-LKVCSDG-----SSHVGRI  157 (334)
Q Consensus        84 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~-~~i~~~~-----~g~~Gel  157 (334)
                      ......|+.+|.+..+.........                      ...++|.|+++.. +.+.+++     .++.|||
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel  381 (536)
T d1mdba_         324 CTLQQVFGMAEGLVNYTRLDDPEEI----------------------IVNTQGKPMSPYDESRVWDDHDRDVKPGETGHL  381 (536)
T ss_dssp             SEEEEEEECTTSCEEECCTTSCHHH----------------------HHHCCCEESSTTCEEEEECTTSCBCCTTCCEEE
T ss_pred             ceeeecccccccccccccccccccc----------------------ccCCcccCCCCcceEEEEcCCCCeeccccccee
Confidence            8899999999877544433222111                      2346899986544 4544443     6788999


Q ss_pred             EEcCcchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEEE
Q 019921          158 LTRGAHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVVV  237 (334)
Q Consensus       158 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  237 (334)
                      +++|+.++.||++++..+...+..++||+|||++++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|+
T Consensus       382 ~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vv  461 (536)
T d1mdba_         382 LTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMV  461 (536)
T ss_dssp             EEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEE
T ss_pred             ecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence            99999999999999988888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccchH
Q 019921          238 GIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRRD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r~  317 (334)
                      +.+++..++.++++|+++++                 ....++++++++++.++.|++|+.++++ ++||+|++|||+|+
T Consensus       462 g~~~~~~g~~~~a~v~~~~~-----------------~~~~~~l~~~l~~~~l~~~~~P~~i~~v-~~lP~t~~GKi~r~  523 (536)
T d1mdba_         462 SMPDQFLGERSCVFIIPRDE-----------------APKAAELKAFLRERGLAAYKIPDRVEFV-ESFPQTGVGKVSKK  523 (536)
T ss_dssp             EEEETTTEEEEEEEEEESSS-----------------CCCHHHHHHHHHHTTCCGGGSCSEEEEC-SSCCBCTTSCBCHH
T ss_pred             EEEcCCCCeEEEEEEEECCC-----------------CCCHHHHHHHHHhcCCCcCcCccEEEEE-CCCCcCCCcCccHH
Confidence            99998889999999988765                 2456788999987459999999988865 78999999999999


Q ss_pred             HHHHHHHhhcc
Q 019921          318 EVRREVMSHLK  328 (334)
Q Consensus       318 ~l~~~~~~~~~  328 (334)
                      +|+++++++|.
T Consensus       524 ~L~~~~~~~l~  534 (536)
T d1mdba_         524 ALREAISEKLL  534 (536)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.3e-42  Score=324.34  Aligned_cols=268  Identities=25%  Similarity=0.348  Sum_probs=228.5

Q ss_pred             eeeccceEEEcCC---CCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHh
Q 019921            3 MLMVGACHVFIPK---FESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATN   79 (334)
Q Consensus         3 ~l~~G~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~   79 (334)
                      +++.|+++++...   .+....++.+..+.++.+..+|......        ....++++|.+++||+++++++.+++.+
T Consensus       228 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~G~~~~~~~~~~~~~  299 (514)
T d1amua_         228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL--------DPERILSIQTLITAGSATSPSLVNKWKE  299 (514)
T ss_dssp             HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS--------CTTTCCSCSEEEEESSCCCHHHHHHHTT
T ss_pred             cccccccccccccccccchhhhhhhhhhhhcccccceeeecccc--------cccccccccEEEEecccCCHHHhhhhcc
Confidence            5677888887754   5678889999999999999999764321        2235789999999999999999988766


Q ss_pred             hCCCCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCce
Q 019921           80 SFPKAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHV  154 (334)
Q Consensus        80 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~  154 (334)
                         +..+++.||+||++.+++..........                    ...+.+.+.++..+.+.|++     .|+.
T Consensus       300 ---~~~~~~~yG~tE~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~v~~~d~~~~~~~~g~~  356 (514)
T d1amua_         300 ---KVTYINAYGPTETTICATTWVATKETIG--------------------HSVPIGAPIQNTQIYIVDENLQLKSVGEA  356 (514)
T ss_dssp             ---TSEEEEEECCGGGSSCSEEEECCSSCCC--------------------SSCCCBEECTTEEEEEECTTSCBCCTTCE
T ss_pred             ---ceeEEEeeccccCceeeeeccccccccC--------------------cccccccceeeeeEeeecccceecCCCCe
Confidence               6799999999999987765544322211                    22357889999999998876     6889


Q ss_pred             eEEEEcCcchhhhhhhcccCCCCcc------CCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcC
Q 019921          155 GRILTRGAHVMLRYWDQFLAKPSVS------TGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQH  228 (334)
Q Consensus       155 Gel~v~g~~~~~gy~~~~~~~~~~~------~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  228 (334)
                      |||+|+|+++++||++++..+...|      ++++||+|||+|++|+||+|+++||.+|+|+.+|++|+|.+||++|.+|
T Consensus       357 GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~  436 (514)
T d1amua_         357 GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKH  436 (514)
T ss_dssp             EEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTS
T ss_pred             eEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhC
Confidence            9999999999999999887654443      4689999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccC
Q 019921          229 PGIIGIVVVGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPL  308 (334)
Q Consensus       229 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~  308 (334)
                      |.|.+++|+++++...++.++++|+++++                  .+.++|++++++ .++.+++|..++++ ++||+
T Consensus       437 ~~V~~~~V~~~~~~~~g~~~~a~v~~~~~------------------~~~~~l~~~~~~-~l~~~~~p~~i~~v-~~lP~  496 (514)
T d1amua_         437 MYISETAVSVHKDHQEQPYLCAYFVSEKH------------------IPLEQLRQFSSE-ELPTYMIPSYFIQL-DKMPL  496 (514)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEEEESSC------------------CCHHHHHHHHHH-HSCGGGSCSEEEEC-SSCCB
T ss_pred             CCccEEEEEEEECCCCCEEEEEEEEcCCC------------------CCHHHHHHHHHh-hCCcccCceEEEEe-CCCCC
Confidence            99999999999999889999999987775                  557889999999 79999999998765 78999


Q ss_pred             CCCCccchHHHHH
Q 019921          309 TSTGKIRRDEVRR  321 (334)
Q Consensus       309 t~~GKv~r~~l~~  321 (334)
                      |++|||+|++|++
T Consensus       497 t~~GKi~R~~L~~  509 (514)
T d1amua_         497 TSNGKIDRKQLPE  509 (514)
T ss_dssp             CTTSSBCGGGSCC
T ss_pred             CCCcChhHHhcCC
Confidence            9999999999886

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=5e-40  Score=306.39  Aligned_cols=279  Identities=26%  Similarity=0.421  Sum_probs=227.8

Q ss_pred             eeeccceEEEcCCCCHHHHHHHHHhhcceEEEechHHHHHHHHHHhhccccCCCCCccEEEeccCCCCHHHHHHHHhhCC
Q 019921            3 MLMVGACHVFIPKFESKSALEAVEQHCVTSLITVPAIMADLATLIRVKKTWKGRDSVKKILNGGGGLPSELMKEATNSFP   82 (334)
Q Consensus         3 ~l~~G~~~v~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~   82 (334)
                      +...++++++.+.+++..++..+..++++.++.+|+.+..+............+++||.+++||+++++++.+++.+.+ 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-  296 (503)
T d3cw9a1         218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-  296 (503)
T ss_dssp             HHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-
T ss_pred             ccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-
Confidence            3456778888888999999999999999999999999998877665554445678999999999999999999999998 


Q ss_pred             CCceEcccccccccccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCceeeccccCcceEEEeeCC-----CCceeEE
Q 019921           83 KAKLISAYGMTETSSSLTFMTLYDPTLETPGQLPQAFGNVTPNSVHQPQGVCVGKPAPHVELKVCSDG-----SSHVGRI  157 (334)
Q Consensus        83 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~-----~g~~Gel  157 (334)
                      +..+.+.||+||++..+..........                       .+.+.+.+.....+.+..     .|+.|++
T Consensus       297 ~~~~~~~yg~~e~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~  353 (503)
T d3cw9a1         297 PGEKVNIYGTTEAMNSLYMRQPKTGTE-----------------------MAPGFFSEVRIVRIGGGVDEIVANGEEGEL  353 (503)
T ss_dssp             CSEEEEEEEETTTEEEEEEESCSSSSE-----------------------EBCCTTCCEEEECTTSCTTCBCCTTCCEEE
T ss_pred             cccccccccccccceeeeecccccccc-----------------------ccccccccceeeeeecccCcccCCCccccc
Confidence            889999999999987655444332211                       112222222222221111     5777887


Q ss_pred             EEcC-cchhhhhhhcccCCCCccCCCceEeccceEEEcCCCcEEEeeccCceeeeCceeeChHHHHHHHhcCCCcceEEE
Q 019921          158 LTRG-AHVMLRYWDQFLAKPSVSTGEVWLDTGDIGSIDDGGNVWLVGRRNGRIKSGGENVYPEEVEAVLLQHPGIIGIVV  236 (334)
Q Consensus       158 ~v~g-~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  236 (334)
                      .+.+ +....+|++++..+...+ .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|
T Consensus       354 ~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v  432 (503)
T d3cw9a1         354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV  432 (503)
T ss_dssp             EEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEE
T ss_pred             cccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence            7765 556677888887776666 57899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcceeEEEEEEEeccCccccccccccccchhhhhccHHHHHHHHHhcCCCCcccceEEEeccCCccCCCCCccch
Q 019921          237 VGIANARLTEMVVACVRLRESWQWSESNCDQSSKNKELLLSSEVLRQHCREKNLTGFKAPRLFVLWRKPFPLTSTGKIRR  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~~~~~~~~lP~t~~GKv~r  316 (334)
                      ++.+++..++.++++|+++.+                ...+.+++++++++..++.|++|..++++ ++||+|++|||+|
T Consensus       433 ~~~~~~~~g~~~~a~v~~~~~----------------~~~~~~~l~~~~~~~~l~~~~~P~~i~~v-~~~P~t~~GKi~R  495 (503)
T d3cw9a1         433 IGLADQRWGQSVTACVVPRLG----------------ETLSADALDTFCRSSELADFKRPKRYFIL-DQLPKNALNKVLR  495 (503)
T ss_dssp             EEEEETTTEEEEEEEEEECTT----------------CCCCHHHHHHHHHHSSSCGGGSCSEEEEC-SCCCBCTTSCBCH
T ss_pred             EEEECCCCCeEEEEEEEeCCC----------------CCCCHHHHHHHHHhcCCCCCCCccEEEEE-CCCCcCCCcCccH
Confidence            999998888999999998765                23567889999975579999999988775 7799999999999


Q ss_pred             HHHHHHH
Q 019921          317 DEVRREV  323 (334)
Q Consensus       317 ~~l~~~~  323 (334)
                      ++|++++
T Consensus       496 ~~L~~~~  502 (503)
T d3cw9a1         496 RQLVQQV  502 (503)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999986