Citrus Sinensis ID: 019924

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARRN
Secondary Structure (PSIPRED)
cEEcccccccEEEcccccccccccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccEEEcccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHccccccEEEEcccccccccEEEEEEEEEccccEEHHccccccEEEEcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEHHHHHHccccHHHHHHHHHHccccEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccccccccccHccccccccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEcccccccccccccHHccccccEEEEcccccccccccHHHHHHHHHHHHEccccccccccccccHccHHHHHHccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHcccccccccccccccccccccccccccHHHHHcccccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MWDLGIATLYYLDLSnnfltnieyfpptnmtqlnfdsnlTHKVLDMRmnnfngkiprkfvkscnltslnlngnrlegplppslvnchhlevlnvgnnqindnfpnwLEILPELQVLILRsnrfwgpigenttivpfpslriidlshneFTGVLLTGYLDNfkammhgnniSVEVDymtplnssnyYESIILTIKGIDIKMERILTIFMTIdlssnkfqggipeVVGKLNllkglnishnnltglcgfpllescnideapepvgstrfdeeedasswfdwKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSslgiarrn
Flexible Loop (DISEMBL)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIekyqsnkvrirvsslgiarrn
Low Complexity Region (SEG)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARRN
Disordered region (IsUnstruct)
*WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLESCNID*****************SSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVS********
Disordered Region (DISOPRED)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN***V*VDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG***************************SSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLG*A***
Disordered Region (DISEMBL)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARRN
Disordered Region (DISPRO)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRI***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.685	0.270	0.425	5e-41
C0LGV1	1135	LRR receptor-like serine/	no	no	0.679	0.2	0.313	3e-15
O49318	1124	Probable leucine-rich rep	no	no	0.688	0.204	0.285	6e-15
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.604	0.161	0.316	4e-14
Q9FL51	872	Probably inactive leucine	no	no	0.562	0.215	0.297	1e-13
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.562	0.157	0.318	3e-13
O82318	960	Probably inactive leucine	no	no	0.634	0.220	0.290	5e-13
Q9FL28	1173	LRR receptor-like serine/	no	no	0.703	0.200	0.274	5e-13
O49545	1003	Leucine-rich repeat recep	no	no	0.700	0.233	0.279	5e-13
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.580	0.154	0.296	8e-13

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  168 bits (426), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/242 (42%), Positives = 147/242 (60%), Gaps = 13/242 (5%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           +++L +LDLSNN  +      P+ +   NF  ++  K L++  NNF+G +P  F K+  L
Sbjct: 466 LSSLGFLDLSNNLFSGS---IPSCIR--NFSGSI--KELNLGDNNFSGTLPDIFSKATEL 518

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            SL+++ N+LEG  P SL+NC  LE++NV +N+I D FP+WLE LP L VL LRSN+F+G
Sbjct: 519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYG 578

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD-YMTPL--NS 182
           P+      + F SLRIID+SHN F+G L   Y  N+K M     ++ E+D YMT     +
Sbjct: 579 PLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDM---TTLTEEMDQYMTEFWRYA 635

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
            +YY  + +  KG+D+  ERI   F  ID S NK  G IPE +G L  L+ LN+S N  T
Sbjct: 636 DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFT 695

Query: 243 GL 244
            +
Sbjct: 696 SV 697

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 124/274 (45%), Gaps = 47/274 (17%)

Query: 5   GIATLYYLDLSNNFLTN---IEYFPPTNMTQLNFDSNLTHKVLDMRM------------- 48
           G   L  LDLS N+LT       F   N+T+L   SN    V+ + +             
Sbjct: 417 GCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVN 476

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
           N   G+IP+      NL+ L+L+ N L GP+P  + NC  L++LN+ NN +    P  L 
Sbjct: 477 NRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLS 536

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAM-M 165
            L +LQVL + SN   G I +  ++    SL  + LS N F G + +  G+  N + + +
Sbjct: 537 SLTKLQVLDVSSNDLTGKIPD--SLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDL 594

Query: 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225
             NNIS  +               +  I+ +DI           ++LS N   G IPE +
Sbjct: 595 SSNNISGTIPEE------------LFDIQDLDI----------ALNLSWNSLDGFIPERI 632

Query: 226 GKLNLLKGLNISHNNLTG----LCGFPLLESCNI 255
             LN L  L+ISHN L+G    L G   L S NI
Sbjct: 633 SALNRLSVLDISHNMLSGDLSALSGLENLVSLNI 666

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 119/263 (45%), Gaps = 33/263 (12%)

Query: 7   ATLYYLDLSNNFLTNIEYFPP-----TNMTQLNFDSNL-----------THKVLDMRM-- 48
           + L+ +D S N L+     PP     +N+  LN  SN               +L +R+  
Sbjct: 421 SPLWVVDFSENQLSG--KIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVG 478

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
           N   G+ P +  K  NL+++ L+ NR  GPLPP +  C  L+ L++  NQ + N PN + 
Sbjct: 479 NRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEIS 538

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMH 166
            L  L    + SN   GPI   + I     L+ +DLS N F G L    G L   + +  
Sbjct: 539 KLSNLVTFNVSSNSLTGPI--PSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRL 596

Query: 167 GNNISVEVDYMTPLNSSNYYESIILTIKG------IDIKMERILTIFMTIDLSSNKFQGG 220
             N         P    N      L + G      I  ++  + ++ + ++LS N F G 
Sbjct: 597 SEN---RFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGE 653

Query: 221 IPEVVGKLNLLKGLNISHNNLTG 243
           IP  +G L+LL  L++++N+L+G
Sbjct: 654 IPPEIGNLHLLMYLSLNNNHLSG 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 106/243 (43%), Gaps = 41/243 (16%)

Query: 43  VLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN 102
           +LDM  N   G IP + V    LT ++LN N L GP+PP L     L  L + +NQ  ++
Sbjct: 627 LLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVES 686

Query: 103 FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL--LTGYLDN 160
            P  L    +L VL L  N   G I +   I    +L +++L  N+F+G L    G L  
Sbjct: 687 LPTELFNCTKLLVLSLDGNSLNGSIPQE--IGNLGALNVLNLDKNQFSGSLPQAMGKLSK 744

Query: 161 FKAMMHGNN-----ISVEVDYMTPLNSS-----NYYESIILTIKGIDIKMERILTIFMTI 210
              +    N     I VE+  +  L S+     N +   I +  G   K+E       T+
Sbjct: 745 LYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLE-------TL 797

Query: 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNL-------------------TGLCGFPLLE 251
           DLS N+  G +P  VG +  L  LN+S NNL                   TGLCG P L 
Sbjct: 798 DLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLCGSP-LS 856

Query: 252 SCN 254
            CN
Sbjct: 857 RCN 859

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL51|Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 27/215 (12%)

Query: 44  LDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF 103
           LD+  N  +G  P        L +L+L+ N  EG LP S+  C  LE L V NN  +  F
Sbjct: 274 LDVSQNKLSGSFPSGICSGKRLINLSLHSNFFEGSLPNSIGECLSLERLQVQNNGFSGEF 333

Query: 104 PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-----LTGYL 158
           P  L  LP ++++   +NRF G + E+ ++    +L  +++ +N F+G +     L   L
Sbjct: 334 PVVLWKLPRIKIIRADNNRFTGQVPESVSLA--SALEQVEIVNNSFSGEIPHGLGLVKSL 391

Query: 159 DNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL---------TIFMT 209
             F A    N  S E+         N+ +S +L+I  ++I   R+L            ++
Sbjct: 392 YKFSASQ--NRFSGEL-------PPNFCDSPVLSI--VNISHNRLLGKIPELKNCKKLVS 440

Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
           + L+ N F G IP  +  L++L  L++S N+LTGL
Sbjct: 441 LSLAGNAFTGEIPPSLADLHVLTYLDLSDNSLTGL 475

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 98/204 (48%), Gaps = 16/204 (7%)

Query: 43  VLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN 102
            LD+  NNF G+IP+   KS NL     + NRLEG LP  + N   L+ L + +NQ+   
Sbjct: 428 ALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGE 487

Query: 103 FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL---LTGYLD 159
            P  +  L  L VL L +N F G I     +    SL  +DL  N   G +   +T    
Sbjct: 488 IPREIGKLTSLSVLNLNANMFQGKI--PVELGDCTSLTTLDLGSNNLQGQIPDKITALAQ 545

Query: 160 NFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG 219
               ++  NN+S  +    P   S Y+  I +     D+   +   IF   DLS N+  G
Sbjct: 546 LQCLVLSYNNLSGSI----PSKPSAYFHQIEMP----DLSFLQHHGIF---DLSYNRLSG 594

Query: 220 GIPEVVGKLNLLKGLNISHNNLTG 243
            IPE +G+  +L  +++S+N+L+G
Sbjct: 595 PIPEELGECLVLVEISLSNNHLSG 618

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 36/248 (14%)

Query: 27  PTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86
           P N+ + N   NLT  VLD+  NN  GK+P     S +LT L L  N L+  +PPSL  C
Sbjct: 354 PANLGKHN---NLT--VLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMC 408

Query: 87  HHLEVLNVGNNQINDNFP---------NWLEI-------------LPELQVLILRSNRFW 124
             LE + + NN  +   P         N+L++             +P+L++L L  N+F+
Sbjct: 409 QSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQGNINTWDMPQLEMLDLSVNKFF 468

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN 184
           G + + +       L+ +DLS N+ +GV+  G +  F  +M  +    E+  + P   S+
Sbjct: 469 GELPDFSR---SKRLKKLDLSRNKISGVVPQGLM-TFPEIMDLDLSENEITGVIPRELSS 524

Query: 185 YYESIILTIKGIDIKME-----RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
               + L +   +   E         +   +DLS N+  G IP+ +G +  L  +NISHN
Sbjct: 525 CKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHN 584

Query: 240 NLTGLCGF 247
            L G   F
Sbjct: 585 LLHGSLPF 592

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 123/291 (42%), Gaps = 56/291 (19%)

Query: 1   MWDLGIATLYYLDLSNNFLTNI---EYFPPTNMTQLNFD-SNLTHKV------------- 43
           +W+L    ++YLDL NN L+     E    +++  + FD +NLT K+             
Sbjct: 140 IWEL--KNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMF 197

Query: 44  -----------------------LDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP 80
                                  LD+  N   GKIPR F    NL SL L  N LEG +P
Sbjct: 198 VAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIP 257

Query: 81  PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLR 140
             + NC  L  L + +NQ+    P  L  L +LQ L +  N+    I   +++     L 
Sbjct: 258 AEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIP--SSLFRLTQLT 315

Query: 141 IIDLSHNEFTGVLLT--GYLDNFKAM-MHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197
            + LS N   G +    G+L++ + + +H NN + E     P + +N     +LT+   +
Sbjct: 316 HLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEF----PQSITNLRNLTVLTVGFNN 371

Query: 198 IKME-----RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
           I  E      +LT    +    N   G IP  +     LK L++SHN +TG
Sbjct: 372 ISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTG 422

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 59/293 (20%)

Query: 2   WDLG-IATLYYLDLSNNFLTN---IEYFPPTNMTQLNFDSNLTH-------------KVL 44
           W+LG +++L  +DLSNN  T      +    N+T LN   N  H             +VL
Sbjct: 281 WELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHGEIPEFIGDLPELEVL 340

Query: 45  DMRMNNFNGKIPRKFVKSCNLTSLNLN--------------GNRLE----------GPLP 80
            +  NNF G IP+K  ++  L  ++L+              GN+LE          G +P
Sbjct: 341 QLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSGNKLETLITLGNFLFGSIP 400

Query: 81  PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPS 138
            SL  C  L  + +G N +N + P  L  LP+L  + L+ N   G  P+    ++    +
Sbjct: 401 DSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELPVAGGVSV----N 456

Query: 139 LRIIDLSHNEFTGVLLTGYLDNF----KAMMHGNN----ISVEVDYMTPLNSSNYYESII 190
           L  I LS+N+ +G L    + NF    K ++ GN     I  EV  +  L+  ++  ++ 
Sbjct: 457 LGQISLSNNQLSGPLPPA-IGNFTGVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHNLF 515

Query: 191 LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                 +I   ++LT    +DLS N+  G IP  +  + +L  LN+S N+L G
Sbjct: 516 SGRIAPEISRCKLLTF---VDLSRNELSGEIPNEITAMKILNYLNLSRNHLVG 565

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 15/209 (7%)

Query: 44  LDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF 103
           L +  N F G+IPR F K   L+ L+++ N L G +P  L  C  L  +++ NN ++   
Sbjct: 605 LRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query: 104 PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
           P WL  LP L  L L SN+F G +   T I    ++  + L  N   G  +   + N +A
Sbjct: 665 PTWLGKLPLLGELKLSSNKFVGSLP--TEIFSLTNILTLFLDGNSLNGS-IPQEIGNLQA 721

Query: 164 MMHGNNISVEVDYMT-PLNSSNYYESIILTIK--------GIDIKMERILTIFMTIDLSS 214
           +   N +++E + ++ PL S+    S +  ++         I +++ ++  +   +DLS 
Sbjct: 722 L---NALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSY 778

Query: 215 NKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
           N F G IP  +  L  L+ L++SHN L G
Sbjct: 779 NNFTGRIPSTISTLPKLESLDLSHNQLVG 807

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
225462116	1001	PREDICTED: receptor-like protein 12-like	0.934	0.311	0.393	5e-67
224116970	921	predicted protein [Populus trichocarpa]	0.931	0.337	0.439	5e-67
225455498	980	PREDICTED: receptor-like protein 12-like	0.934	0.318	0.409	2e-63
296082718	745	unnamed protein product [Vitis vinifera]	0.901	0.404	0.412	3e-63
147773180	870	hypothetical protein VITISV_024119 [Viti	0.904	0.347	0.451	7e-63
296086784	816	unnamed protein product [Vitis vinifera]	0.892	0.365	0.394	5e-61
147826872	751	hypothetical protein VITISV_000530 [Viti	0.793	0.352	0.426	2e-60
359493479	814	PREDICTED: receptor-like protein 12-like	0.895	0.367	0.406	2e-60
359493544	978	PREDICTED: receptor-like protein 12-like	0.943	0.322	0.400	2e-60
296089526	616	unnamed protein product [Vitis vinifera]	0.895	0.485	0.406	4e-60

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 168/427 (39%), Positives = 213/427 (49%), Gaps = 115/427 (26%)

Query: 2   WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-------------------- 41
           W++G  TL Y +LS N LT  E FP  NM  L+  SNL                      
Sbjct: 568 WNMGTETLSYFNLSQNLLTRFERFPWKNMLFLDLHSNLLQGPLPSLICEMSYISVLDFSN 627

Query: 42  ------------------KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83
                              VLD+RMN  +G IP  F K   + +L  NGN+LEGPLP SL
Sbjct: 628 NNLSGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSL 687

Query: 84  VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143
           +NC  L+VL++GNN+IND FP WLE LPELQVLILRSNRF G I  +    PFP LRI+D
Sbjct: 688 INCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMD 747

Query: 144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI 203
           LS N+F+G L   YL NFKAMM+     +++ YM       Y +SI+ TIKG D +   I
Sbjct: 748 LSRNDFSGSLPEMYLKNFKAMMNVTEDKMKLKYM---GEYYYRDSIMGTIKGFDFEF-VI 803

Query: 204 LTIFMTIDLSSNKFQGGIPEVVGKLN---------------------------------- 229
           L+ F TIDLSSN+FQG I + +G L+                                  
Sbjct: 804 LSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSN 863

Query: 230 --------------LLKGLNISHNNLTG---------------------LCGFPLLESCN 254
                          L+ LN+S N+LTG                     LCG PL + C 
Sbjct: 864 KLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCV 923

Query: 255 IDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIE 314
           +DEAP+P      +EE ++ + FDWK   MGYG GLV+GL +G +VF T KP+W V MIE
Sbjct: 924 VDEAPQPPK----EEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWFVTMIE 979

Query: 315 KYQSNKV 321
             +  KV
Sbjct: 980 GDRHKKV 986

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 173/394 (43%), Positives = 217/394 (55%), Gaps = 83/394 (21%)

Query: 2   WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQL--NFDSNLTHKVLDMRMNNFNGKIPRKF 59
           W   I T   ++LSNN L+        N+ Q   NF + L+  VL++R N+F+G IP  F
Sbjct: 537 WICNITTFQIINLSNNSLSG-------NIPQCLGNFSTELS--VLNLRSNSFHGTIPGSF 587

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
            +   + SL+LNGN LEG LP SL NC  LEVL++GNN IND+FP WL+ LP+LQVL+LR
Sbjct: 588 TEGNKIRSLDLNGNELEGSLPLSLANCKMLEVLDLGNNYINDSFPLWLQTLPKLQVLVLR 647

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
           SNR  G IG  T I PF SLRIIDLSHNEF G+L T Y+ NF+AM     +  EV     
Sbjct: 648 SNRLHGSIGNPTAISPFSSLRIIDLSHNEFIGLLPTQYIANFQAM---KKVDGEVKATPK 704

Query: 180 LNSSNYYE-SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
                YY+ SI+LT+KG +I MERILTIF TIDLSSN+F+G IP+ VG L+ L  LNIS 
Sbjct: 705 YIGEIYYQDSIVLTMKGTEIPMERILTIFTTIDLSSNRFEGQIPKEVGLLSSLIVLNISR 764

Query: 239 NNLTG-----LCGFPLLESCNIDE----------------------------APEPVGST 265
           N++TG     L     LES ++                               P P GS 
Sbjct: 765 NSVTGQIPSSLGNLTALESLDLSSNGLGGGIPSQLTRLTFLAVLNLSYNQLVGPIPHGS- 823

Query: 266 RFDEEEDAS----------------------------------SWFDWKFAKMGYGSGLV 291
           +FD  ++ S                                  S F+WKFA +GYG GLV
Sbjct: 824 QFDTFQNDSYVGNLRLCGFPLSVKCSGDVAPQPPPFQEKEDPASLFNWKFAMIGYGCGLV 883

Query: 292 IGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRV 325
           IGLSVGY+VF TGKP+W VR +E  Q   +R R 
Sbjct: 884 IGLSVGYIVFTTGKPQWFVRKVEVEQKKWLRRRT 917

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 165/403 (40%), Positives = 220/403 (54%), Gaps = 91/403 (22%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           ++++  LDLS+N   N+    P  +   NF  +L+  VL++R N F+G IP+ F+K   +
Sbjct: 595 VSSIRVLDLSSN---NLSGMLPHCLG--NFSKDLS--VLNLRRNRFHGTIPQSFLKGNVI 647

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L+ N NRLEG +P SL+ C  LEVLN+GNN+IND FP+WL  LPELQVL+LRSN F G
Sbjct: 648 RNLDFNDNRLEGLVPRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHG 707

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
            IG +    PF SLRIIDL+HN+F G L   YL + K  M+ +  ++   YM      NY
Sbjct: 708 HIGCSKLKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYM----GGNY 763

Query: 186 YE-SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG----------- 233
           YE S+++TIKG++I+  +IL  F TIDLSSNKFQG IP+ +G LN L+G           
Sbjct: 764 YEDSVMVTIKGLEIEFVKILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGH 823

Query: 234 -------------------------------------LNISHNNLTG------------- 243
                                                LN+S N+LTG             
Sbjct: 824 IPSSFGNLKLLESLDLSSNKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGN 883

Query: 244 --------LCGFPLLESCNIDEAPEPVGSTRFDEEEDAS--SWFDWKFAKMGYGSGLVIG 293
                   LCGFPL + C  DE PEP       +EEDA   + FDWKF  +GYG GLV G
Sbjct: 884 DSYNGNSELCGFPLSKKCIADETPEP------SKEEDAEFENKFDWKFMLVGYGCGLVYG 937

Query: 294 LSVGYMVFGTGKPRWLVRMIEKYQSNKVR--IRVSSLGIARRN 334
           LS+G ++F  GKP+W V +IE+    K+R   R +    ARRN
Sbjct: 938 LSLGGIIFLIGKPKWFVSIIEENIHKKIRRCKRSTCRQGARRN 980

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082718|emb|CBI21723.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 159/385 (41%), Positives = 207/385 (53%), Gaps = 84/385 (21%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           ++ +  LD SNN   N+    P  +   NF  +L+  VLD+RMN  +G IP  F K   +
Sbjct: 361 MSYISVLDFSNN---NLSGLIPQCLG--NFSESLS--VLDLRMNQLHGNIPETFSKGNFI 413

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L  NGN+LEGPLP SL+NC  L+VL++GNN+IND FP WLE LPELQVLILRSNRF G
Sbjct: 414 RNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHG 473

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
            I  +    PFP LRI+DLS N+F+G L   YL NFKAMM+     +++ YM       Y
Sbjct: 474 HISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVTEDKMKLKYM---GEYYY 530

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN---------------- 229
            +SI+ TIKG D +   IL+ F TIDLSSN+FQG I + +G L+                
Sbjct: 531 RDSIMGTIKGFDFEFV-ILSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHI 589

Query: 230 --------------------------------LLKGLNISHNNLTG-------------- 243
                                            L+ LN+S N+LTG              
Sbjct: 590 PSSLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANN 649

Query: 244 -------LCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSV 296
                  LCG PL + C +DEAP+P      +EE ++ + FDWK   MGYG GLV+GL +
Sbjct: 650 SYSGNIGLCGLPLSKKCVVDEAPQPPK----EEEVESDTGFDWKVILMGYGCGLVVGLFM 705

Query: 297 GYMVFGTGKPRWLVRMIEKYQSNKV 321
           G +VF T KP+W V MIE  +  KV
Sbjct: 706 GCLVFLTRKPKWFVTMIEGDRHKKV 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773180|emb|CAN78183.1| hypothetical protein VITISV_024119 [Vitis vinifera]

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 152/337 (45%), Positives = 201/337 (59%), Gaps = 35/337 (10%)

Query: 2   WDLG-----IATLYY---LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG 53
           W++G     I  + Y   LD SNN   N+    P  +   NF  + +  VLD+RMN   G
Sbjct: 535 WNVGPLPSLICEMSYIEVLDFSNN---NLSGLIPQCLG--NFSKSFS--VLDLRMNQLYG 587

Query: 54  KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL 113
            IP+ F K   + +L+ NGN+LEGPL  SL+NC  L+VL++GNN+IND FP+WLE LPEL
Sbjct: 588 TIPKTFSKGNLIRNLDFNGNQLEGPLLRSLINCRRLQVLDLGNNRINDTFPHWLETLPEL 647

Query: 114 QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVE 173
           QVLILRSNRF G +  +    PFP LRI+DLS N F+  L   YL NFKAMM+     +E
Sbjct: 648 QVLILRSNRFHGHVRGSNFQFPFPKLRIMDLSRNGFSASLSKIYLKNFKAMMNATEDKME 707

Query: 174 VDYMTPLNSSNYYESIILTIKGIDIKM--ERI------LTIFMTIDLSSNKFQGGIPEVV 225
           + +M      +Y +SI++TIKG D +    RI      LT    ++LS N   G IP   
Sbjct: 708 LKFM---GEYSYRDSIMVTIKGFDFEFLSGRIPRELTSLTFLEVLNLSKNHLTGVIP--- 761

Query: 226 GKLNLLKGL-NISHNNLTGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKM 284
            + N      N S++   GLCGFPL + C +DEAP+P      +EE ++ + FDWK   M
Sbjct: 762 -RGNQFDSFTNNSYSGNIGLCGFPLSKKCVVDEAPQPPK----EEEVESDTGFDWKVILM 816

Query: 285 GYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKV 321
           GYG GLV+GLS+G +VF T KP+W VRMIE  +  KV
Sbjct: 817 GYGCGLVVGLSIGCLVFLTRKPKWFVRMIEGDRHKKV 853

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086784|emb|CBI32933.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 157/398 (39%), Positives = 208/398 (52%), Gaps = 100/398 (25%)

Query: 2   WDLGIATLYYLDLSNN---------FLTNIEYFPPTNMTQLNFDSNLTH---------KV 43
           W++G  TL+YL+LS N          +  +      +++  N    L H          V
Sbjct: 249 WNMGKDTLWYLNLSYNSISGGGISPLICKVSSIRVLDLSSNNLSGMLPHCLGNFSKDLSV 308

Query: 44  LDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF 103
           L++R N F+G IP+ F+K   + +L+ N NRLEG +P SL+ C  LEVLN+GNN+IND F
Sbjct: 309 LNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLVPRSLIICRKLEVLNLGNNKINDTF 368

Query: 104 PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
           P+WL  LPELQVL+LRSN F G IG +    PF SLRIIDL+HN+F G L   YL + K 
Sbjct: 369 PHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKV 428

Query: 164 MMHGNNISVEVDYMTPLNSSNYYE-SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222
            M+ +  ++   YM      NYYE S+++TIKG++I+  +IL  F TIDLSSNKFQG IP
Sbjct: 429 TMNVDEDNMTRKYM----GGNYYEDSVMVTIKGLEIEFVKILNAFATIDLSSNKFQGEIP 484

Query: 223 EVVGKLNLLKG------------------------------------------------L 234
           + +G LN L+G                                                L
Sbjct: 485 QSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSSNKLIGSIPQQLTSLIFLEVL 544

Query: 235 NISHNNLTG---------------------LCGFPLLESCNIDEAPEPVGSTRFDEEEDA 273
           N+S N+LTG                     LCGFPL + C  DE PEP       +EEDA
Sbjct: 545 NLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPLSKKCIADETPEP------SKEEDA 598

Query: 274 S--SWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWL 309
              + FDWKF  +GYG GLV GLS+G ++F  GKP+W 
Sbjct: 599 EFENKFDWKFMLVGYGCGLVYGLSLGGIIFLIGKPKWF 636

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826872|emb|CAN73268.1| hypothetical protein VITISV_000530 [Vitis vinifera]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 186/342 (54%), Gaps = 77/342 (22%)

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
           N  +G IP  F K   + +L  NGN+LEGPLP SL+NC  L+VL++GNN+IND FP WLE
Sbjct: 403 NQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLE 462

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168
            LPELQVLILRSNRF G I  +    PFP LRI+DLS N+F+G L   YL NFKAMM+  
Sbjct: 463 TLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVT 522

Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
              +++ YM       Y +SI+ TIKG D +   IL+ F TIDLSSN+FQG I + +G L
Sbjct: 523 EDKMKLKYM---GEYYYRDSIMGTIKGFDFEFV-ILSTFTTIDLSSNRFQGEILDFIGSL 578

Query: 229 N------------------------------------------------LLKGLNISHNN 240
           +                                                 L+ LN+S N+
Sbjct: 579 SSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNH 638

Query: 241 LTG---------------------LCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDW 279
           LTG                     LCGFPL + C +DEAP+P      +EE ++ + FDW
Sbjct: 639 LTGVIPRGNQFDTFANNSYSGNIGLCGFPLSKKCVVDEAPQPPK----EEEVESDTGFDW 694

Query: 280 KFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKV 321
           K   MGYG GLV+GL +G +VF T KP+WLV MIE  +  KV
Sbjct: 695 KVILMGYGCGLVVGLFMGCLVFLTRKPKWLVTMIEGDRHKKV 736

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493479|ref|XP_003634609.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/386 (40%), Positives = 209/386 (54%), Gaps = 87/386 (22%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           + ++  LDLSNN   N+    P  +   NF  +L+  VL+++ N F+G IP+ F+K   +
Sbjct: 429 VHSIGVLDLSNN---NLSGRLPHCLG--NFSKDLS--VLNLQGNRFHGTIPQTFLKGNVI 481

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L+ NGN+LEG +P SL+ C  LEVL++GNN+IND FP+WLE LP+LQVL+LRSN F G
Sbjct: 482 RNLDFNGNQLEGLVPRSLIICRELEVLDLGNNKINDTFPHWLETLPKLQVLVLRSNSFHG 541

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
            IG +    PF SLRIIDL+ N+F G L   YL + KA+M+ +   +   YM       Y
Sbjct: 542 HIGFSKIKSPFMSLRIIDLARNDFEGDLPEMYLRSLKAIMNVDEGKMTRKYM---GDHYY 598

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-------------------- 225
            +SI++TIKG++I++ +IL  F TIDLSSNKFQG IPE +                    
Sbjct: 599 QDSIMVTIKGLEIELVKILNTFTTIDLSSNKFQGEIPESIGNLNSLRELNLSHNNLVGHI 658

Query: 226 ----GKLNLLKGLNISHNNL---------------------------------------- 241
               G L LL+ L++S N L                                        
Sbjct: 659 PSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFETFGND 718

Query: 242 -----TGLCGFPLLESCNIDEAPEPVGSTRFDEEEDAS--SWFDWKFAKMGYGSGLVIGL 294
                +GLCGFPL + C  DE  EP       +E DA   S FDWK   MGYG GLVIGL
Sbjct: 719 SYNGNSGLCGFPLSKKCTTDETLEP------SKEADAEFESGFDWKITLMGYGCGLVIGL 772

Query: 295 SVGYMVFGTGKPRWLVRMIEKYQSNK 320
           S+G  +F TGKP W VR+IE+   NK
Sbjct: 773 SLGCFIFLTGKPEWFVRIIEENLHNK 798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/392 (40%), Positives = 210/392 (53%), Gaps = 77/392 (19%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           +++   DLSNN L+ +      N ++  F       VL++R N F+G IP+ F+K   + 
Sbjct: 594 SSMRIFDLSNNNLSGVLPHCLGNFSKDLF-------VLNLRRNQFHGIIPQTFLKGNAIR 646

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           +L+ N N+LEGP+P SL+ C  LEVL++GNN+IND FP+WL  LPELQVL+LRSN F G 
Sbjct: 647 NLDFNDNQLEGPVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGH 706

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
           IG +    PF SLRIIDL+HN+F G L   YL + KA+M+ +  ++   YM       Y 
Sbjct: 707 IGRSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNIDEGNMTRKYM---GEEYYQ 763

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG--- 243
           +SI++TIK ++I+  +IL  F TIDLSSNKFQG IP+ +G LN L+GLN+SHNNL G   
Sbjct: 764 DSIVVTIKRLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLAGHIP 823

Query: 244 --LCGFPLLESCN------IDEAPEPVGSTRFDE-------------------------- 269
                  LLES +      I   P+ + S  F E                          
Sbjct: 824 SSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPQGNQFDTFGNDS 883

Query: 270 --------------------------EEDAS--SWFDWKFAKMGYGSGLVIGLSVGYMVF 301
                                     E DA     FDWK   MGYG GL+IGLS+G ++F
Sbjct: 884 YNENSGLCGFPLSKKCIIDETPESSKETDAEFDGGFDWKITLMGYGCGLIIGLSLGCLIF 943

Query: 302 GTGKPRWLVRMIEKYQSNKVRIRVSSLGIARR 333
            TGKP+WL  M+E+    K  I  S  G  RR
Sbjct: 944 LTGKPKWLTTMVEENIHKK--ITRSKKGTCRR 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089526|emb|CBI39345.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 157/386 (40%), Positives = 209/386 (54%), Gaps = 87/386 (22%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           + ++  LDLSNN   N+    P  +   NF  +L+  VL+++ N F+G IP+ F+K   +
Sbjct: 231 VHSIGVLDLSNN---NLSGRLPHCLG--NFSKDLS--VLNLQGNRFHGTIPQTFLKGNVI 283

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L+ NGN+LEG +P SL+ C  LEVL++GNN+IND FP+WLE LP+LQVL+LRSN F G
Sbjct: 284 RNLDFNGNQLEGLVPRSLIICRELEVLDLGNNKINDTFPHWLETLPKLQVLVLRSNSFHG 343

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
            IG +    PF SLRIIDL+ N+F G L   YL + KA+M+ +   +   YM       Y
Sbjct: 344 HIGFSKIKSPFMSLRIIDLARNDFEGDLPEMYLRSLKAIMNVDEGKMTRKYM---GDHYY 400

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-------------------- 225
            +SI++TIKG++I++ +IL  F TIDLSSNKFQG IPE +                    
Sbjct: 401 QDSIMVTIKGLEIELVKILNTFTTIDLSSNKFQGEIPESIGNLNSLRELNLSHNNLVGHI 460

Query: 226 ----GKLNLLKGLNISHNNL---------------------------------------- 241
               G L LL+ L++S N L                                        
Sbjct: 461 PSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFETFGND 520

Query: 242 -----TGLCGFPLLESCNIDEAPEPVGSTRFDEEEDAS--SWFDWKFAKMGYGSGLVIGL 294
                +GLCGFPL + C  DE  EP       +E DA   S FDWK   MGYG GLVIGL
Sbjct: 521 SYNGNSGLCGFPLSKKCTTDETLEP------SKEADAEFESGFDWKITLMGYGCGLVIGL 574

Query: 295 SVGYMVFGTGKPRWLVRMIEKYQSNK 320
           S+G  +F TGKP W VR+IE+   NK
Sbjct: 575 SLGCFIFLTGKPEWFVRIIEENLHNK 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.733	0.240	0.416	3.3e-42
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.685	0.270	0.425	8.4e-42
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.727	0.244	0.420	9.9e-41
TAIR|locus:2094563	595	RLP36 "receptor like protein 3	0.694	0.389	0.412	2.3e-39
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.601	0.279	0.446	2.9e-39
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.685	0.292	0.416	3.3e-39
TAIR|locus:5019474716	543	AT2G15042 [Arabidopsis thalian	0.655	0.403	0.431	1.6e-38
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.664	0.235	0.452	6.9e-38
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.661	0.247	0.452	7.7e-38
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.736	0.345	0.4	2e-37

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 3.3e-42, P = 3.3e-42
 Identities = 110/264 (41%), Positives = 161/264 (60%)

Query:     5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
             G+++L  LDLSNN L  ++ +   T M+ L+ D       LD+R N+ +G +P  F+ + 
Sbjct:   633 GLSSLEILDLSNNNLNGSLPWCLETLMSSLS-D-------LDLRNNSLSGSLPEIFMNAT 684

Query:    64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
              L SL+++ NR+EG LP SL  C  LEVLNVG+N+IND FP  L  L +LQVL+L SN+F
Sbjct:   685 KLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKF 744

Query:   124 WGPIGENTTI-VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM-TPL- 180
              G +     +   FP L+IID+SHN+F G+L + Y  N+ AM    + ++E +Y+  P  
Sbjct:   745 HGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEYIQNPSV 804

Query:   181 --NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
               +S  YY S++L  KG+ ++MER+LTI+  IDLS N+  G IP+ +G L  L+ LN+S 
Sbjct:   805 YGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSS 864

Query:   239 NNLTG-----LCGFPLLESCNIDE 257
             N  TG     L     LES +I +
Sbjct:   865 NGFTGHIPSSLANLKNLESLDISQ 888

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 103/242 (42%), Positives = 147/242 (60%)

Query:     6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
             +++L +LDLSNN  +      P+ +   NF  ++  K L++  NNF+G +P  F K+  L
Sbjct:   466 LSSLGFLDLSNNLFSGSI---PSCIR--NFSGSI--KELNLGDNNFSGTLPDIFSKATEL 518

Query:    66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
              SL+++ N+LEG  P SL+NC  LE++NV +N+I D FP+WLE LP L VL LRSN+F+G
Sbjct:   519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYG 578

Query:   126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD-YMTPL--NS 182
             P+      + F SLRIID+SHN F+G L   Y  N+K M     ++ E+D YMT     +
Sbjct:   579 PLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDM---TTLTEEMDQYMTEFWRYA 635

Query:   183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
              +YY  + +  KG+D+  ERI   F  ID S NK  G IPE +G L  L+ LN+S N  T
Sbjct:   636 DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFT 695

Query:   243 GL 244
              +
Sbjct:   696 SV 697

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 9.9e-41, P = 9.9e-41
 Identities = 109/259 (42%), Positives = 150/259 (57%)

Query:     5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
             G+A    LDLSNN L  +   P     Q+   S+L+  VL++R N+ +G +P  F+ +  
Sbjct:   613 GLANPLILDLSNNNLHGL--IPRCLEAQM---SSLS--VLNLRNNSLDGSLPNIFMNAKV 665

Query:    65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
             L+SL+++ N LEG LP SL  C  LE+LNV +N IND FP WL  LP+LQVL+LRSN F 
Sbjct:   666 LSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFR 725

Query:   125 GPIGENTTI-VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
             G +     +   FP LRI D+SHN+F G L + Y  N+ A+   +    E+ Y+      
Sbjct:   726 GTLHNVDGVWFGFPLLRITDVSHNDFVGTLPSDYFMNWTAI---SKSETELQYIGDPEDY 782

Query:   184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
              YY S++L  KG+ ++M+RILT +  ID + NK QG IPE VG L  L  LN+S N  TG
Sbjct:   783 GYYTSLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTG 842

Query:   244 -----LCGFPLLESCNIDE 257
                  L     LES +I +
Sbjct:   843 HIPSSLANLTNLESLDISQ 861

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094563 RLP36 "receptor like protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 101/245 (41%), Positives = 140/245 (57%)

Query:     2 WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK 61
             W   +  LY LDLSNN      +F  +    L + S   H  L++R N+ +G +P  F+K
Sbjct:   232 WICKVKDLYALDLSNN------HFNGSIPQCLKY-STYFH-TLNLRNNSLSGVLPNLFIK 283

Query:    62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
                L SL+++ N L G LP SL+NC  +E LNV  N+I D FP WL  LP L+VL+L SN
Sbjct:   284 DSQLRSLDVSSNNLVGKLPKSLINCERIEFLNVKGNKIMDTFPFWLGSLPYLKVLMLGSN 343

Query:   122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM---HGNNISVEVDYMT 178
              F+GP+   +  + FPS+RIID+S+N F G L   Y  N+  M     G++I  +  YM 
Sbjct:   344 AFYGPVYNPSAYLGFPSIRIIDISNNNFVGSLPQDYFANWLEMSLVWSGSDIP-QFKYMG 402

Query:   179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
              +N S Y +SI L  KG++   +RI   F  ID S N+F G IP  +G L+ L+ LN+S 
Sbjct:   403 NVNFSTY-DSIDLVYKGVETDFDRIFEGFNAIDFSGNRFSGHIPGSIGLLSELRLLNLSG 461

Query:   239 NNLTG 243
             N  TG
Sbjct:   462 NAFTG 466

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 91/204 (44%), Positives = 126/204 (61%)

Query:    38 NLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97
             N T  VL +R NN +G+ P + + S +L SL++  NRL G LP SL+NC  LE LNV +N
Sbjct:   516 NTTLSVLHLRNNNLSGEFPEESI-SDHLRSLDVGRNRLSGELPKSLINCTRLEFLNVEDN 574

Query:    98 QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY 157
              IND FP WL +LP+LQ+ +LRSN F GPI      + FP LRI D+S N F GVL + +
Sbjct:   575 IINDKFPFWLRMLPKLQIFVLRSNEFHGPISSLGDSLSFPKLRIFDISENRFNGVLRSDF 634

Query:   158 LDNFKAMMHGNNI-SVEVDYMTPLNSSNYYESIILTIKGIDIKME-RILTIFMTIDLSSN 215
                + AM    +I  +        +S NYY S+ +T+KG  I++   + TI+ TID+S N
Sbjct:   635 FAGWSAMSSAVDIVDIMPSRYAGRDSGNYYNSVTMTVKGSIIELVGSVFTIYKTIDVSGN 694

Query:   216 KFQGGIPEVVGKLNLLKGLNISHN 239
             +F+G IPE +G L  L  LN+S+N
Sbjct:   695 RFEGRIPESIGLLKELIVLNMSNN 718

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 3.3e-39, P = 3.3e-39
 Identities = 102/245 (41%), Positives = 142/245 (57%)

Query:     1 MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV 60
             +W   +  L++LDLSNN        P   +   NF  NLT  +L    N F+G +P  F 
Sbjct:   404 VWICKLKGLHFLDLSNNLFNGS--IP---LCLRNF--NLTGLILGN--NKFSGTLPDIFA 454

Query:    61 KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
              + NL SL+++GN+LEG  P SL+NC  L  +NV +N+I D FP+WL  LP LQVLILRS
Sbjct:   455 NNTNLQSLDVSGNQLEGKFPKSLINCKGLHFVNVESNKIKDTFPSWLGSLPSLQVLILRS 514

Query:   121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM---HGNNISVEVDYM 177
             N F+GP+   +  + F  LRIID+SHN F+GVL   +  +++ M+   HG+   +E D  
Sbjct:   515 NDFYGPLYHPSMSIGFQGLRIIDISHNGFSGVLPPNFFSSWREMITLVHGSYEYIE-DIQ 573

Query:   178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
                N S  Y S+ +  KG+++  ERI   F  ID S N+  G IPE +G L  L+ LN+S
Sbjct:   574 ---NYSLIYRSMEMVNKGVEMSFERIRQDFRAIDFSENRIYGEIPESIGCLEELRLLNLS 630

Query:   238 HNNLT 242
              N  T
Sbjct:   631 GNAFT 635

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:5019474716 AT2G15042 [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 100/232 (43%), Positives = 137/232 (59%)

Query:    14 LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73
             LS+N L + ++         NF S L  + L +R N+ +G  P    +S  L SL++  N
Sbjct:   173 LSSNDLCDNKFNGSIPRCMGNFSSTL--QALHLRKNHLSGVFPENISES--LKSLDVGHN 228

Query:    74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI 133
             +L G LP SLV    LEVLNV NN+IND FP WL  L ELQVL+LRSN F GP+ +    
Sbjct:   229 QLVGKLPRSLVRISSLEVLNVENNKINDTFPFWLSSLEELQVLVLRSNAFHGPMQQTR-- 286

Query:   134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM--MHGNNISVEVDYMTPLNSSNYYESIIL 191
               FP+LRIID+SHN F G L + +  N+  M  +  N      +YM    +S Y +SI++
Sbjct:   287 --FPNLRIIDVSHNHFNGTLPSDFFVNWTVMFLLGENEDQFNGEYM---GTSYYSDSIVV 341

Query:   192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
               KG++++M RIL IF ++D S NKF+G IP+ +G L  L  LN+S N  TG
Sbjct:   342 MNKGLEMEMVRILKIFTSVDFSRNKFEGEIPKSIGLLKELHVLNLSSNTFTG 393

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.9e-38, P = 6.9e-38
 Identities = 110/243 (45%), Positives = 146/243 (60%)

Query:     5 GIATLYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
             G+ +L  LDLS NN+  +I    P  M +L   S L   VL++R NN +G +P+   +S 
Sbjct:   567 GLRSLNTLDLSENNYNGSI----PRCMEKLK--STLF--VLNLRQNNLSGGLPKHIFES- 617

Query:    64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
              L SL++  N L G LP SL+   +LEVLNV +N+IND FP WL  L +LQVL+LRSN F
Sbjct:   618 -LRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAF 676

Query:   124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH-GNNISVEVD-YMTPLN 181
              GPI E T    FP LRIID+SHN F G L T Y   + AM   G N     + YM    
Sbjct:   677 HGPIHEAT----FPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYM---G 729

Query:   182 SSNYYE-SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
             S  YY+ S++L  KG+ +++ RILTI+  +D S NKF+G IP+ +G L  L  LN+S+N 
Sbjct:   730 SGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNA 789

Query:   241 LTG 243
               G
Sbjct:   790 FGG 792

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.7e-38, P = 7.7e-38
 Identities = 109/241 (45%), Positives = 143/241 (59%)

Query:     6 IATLYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
             + +LY LDLS NNF  +I    P  M   N  SNL+   L++R NN +G  P    +S  
Sbjct:   518 LRSLYTLDLSDNNFSGSI----PRCME--NLKSNLSE--LNLRQNNLSGGFPEHIFES-- 567

Query:    65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
             L SL++  N+L G LP SL    +LEVLNV +N+IND FP WL  L +LQVL+LRSN F 
Sbjct:   568 LRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFH 627

Query:   125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH-GN-NISVEVDYMTPLNS 182
             GPI  N  +  FP LRIID+SHN F G L T Y   +  M   G       V+Y   L S
Sbjct:   628 GPI--NQAL--FPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNY---LGS 680

Query:   183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
               Y +S++L  KG++ ++ RILTI+  +D S NKF+G IP+ +G L  L  LN+S+N  T
Sbjct:   681 GYYQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFT 740

Query:   243 G 243
             G
Sbjct:   741 G 741

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 2.0e-37, P = 2.0e-37
 Identities = 110/275 (40%), Positives = 156/275 (56%)

Query:     6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
             + +L  LDLS+N   N     P  M   N  SNL+H  L++R NN +G +P+   +   L
Sbjct:   335 LRSLETLDLSDN---NFSGLIPRCMG--NLKSNLSH--LNLRQNNLSGGLPKHIFEI--L 385

Query:    66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
              SL++  N+L G LP SL     LEVLNV +N+IND FP WL  LP+LQVL+LRSN F G
Sbjct:   386 RSLDVGHNQLVGKLPRSLRFFSTLEVLNVESNRINDTFPFWLTSLPKLQVLVLRSNAFHG 445

Query:   126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP--LNSS 183
             PI E +    F  LRIID+SHN F G L + Y   + AM   +++  + D      + S 
Sbjct:   446 PIHEAS----FLKLRIIDISHNHFNGTLPSDYFVKWSAM---SSLGTDEDRSNANYMGSV 498

Query:   184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
              Y +S++L  KG++ ++ RILTI+  +D S NKF+G IP+ +G L  L  LN+S+N  TG
Sbjct:   499 YYQDSMVLMNKGVESELIRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFTG 558

Query:   244 -----LCGFPLLESCNID------EAPEPVGSTRF 267
                  +     LES ++       E P+ +G+  F
Sbjct:   559 HIPSSMGKLTALESLDVSQNKLYGEIPQEIGNLSF 593

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.4 bits (214), Expect = 2e-18
 Identities = 69/229 (30%), Positives = 103/229 (44%), Gaps = 32/229 (13%)

Query: 15  SNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74
           SN F   I    P N+ + N   NLT  VLD+  NN  G+IP     S NL  L L  N 
Sbjct: 341 SNKFSGEI----PKNLGKHN---NLT--VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 75  LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIV 134
           LEG +P SL  C  L  + + +N  +   P+    LP +  L + +N   G I  N+   
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKW 449

Query: 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIK 194
             PSL+++ L+ N+F G    G  D+F +    N           L+ + +  ++   + 
Sbjct: 450 DMPSLQMLSLARNKFFG----GLPDSFGSKRLEN---------LDLSRNQFSGAVPRKL- 495

Query: 195 GIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                    L+  M + LS NK  G IP+ +     L  L++SHN L+G
Sbjct: 496 -------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 72/244 (29%), Positives = 109/244 (44%), Gaps = 40/244 (16%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
           G+ +L +LDL  N LT     P +  N+  L +        L +  N  +G IP      
Sbjct: 234 GLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQY--------LFLYQNKLSGPIPPSIFSL 283

Query: 63  CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
             L SL+L+ N L G +P  ++   +LE+L++ +N      P  L  LP LQVL L SN+
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN---FKAMMHGNNISVEVDYMTP 179
           F G I +N  +    +L ++DLS N  TG +  G   +   FK ++  N++  E+     
Sbjct: 344 FSGEIPKN--LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
              S                + R       + L  N F G +P    KL L+  L+IS+N
Sbjct: 402 ACRS----------------LRR-------VRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 240 NLTG 243
           NL G
Sbjct: 439 NLQG 442

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 73/252 (28%), Positives = 106/252 (42%), Gaps = 41/252 (16%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           ++L YL+LSNN  T                 NL  + LD+  N  +G+IP       +L 
Sbjct: 118 SSLRYLNLSNNNFTG----SIPR----GSIPNL--ETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L+L GN L G +P SL N   LE L + +NQ+    P  L  +  L+ + L  N   G 
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNNISVEVDYMTPLNSSN 184
           I     I    SL  +DL +N  TG + +  G L N + +               L  + 
Sbjct: 228 I--PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF--------------LYQNK 271

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG- 243
               I  +I          L   +++DLS N   G IPE+V +L  L+ L++  NN TG 
Sbjct: 272 LSGPIPPSIFS--------LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 244 ----LCGFPLLE 251
               L   P L+
Sbjct: 324 IPVALTSLPRLQ 335

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 9   LYYLDLS-NNFLTNIEY----FPPTNMTQL---NFDSNLTH-------KVLDMRMNNFNG 53
           +Y+LD+S NN    I       P   M  L    F   L         + LD+  N F+G
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG 489

Query: 54  KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL 113
            +PRK      L  L L+ N+L G +P  L +C  L  L++ +NQ++   P     +P L
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 114 QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153
             L L  N+  G I +N   V   SL  +++SHN   G L
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNV--ESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 64/258 (24%), Positives = 99/258 (38%), Gaps = 69/258 (26%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLN-------FDSNLTHK------------VLD 45
            +  L  LDLS+N L+      P  + QL        F +N T K            VL 
Sbjct: 282 SLQKLISLDLSDNSLSGE---IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 46  MRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPN 105
           +  N F+G+IP+   K  NLT L+L+ N L G +P  L +  +L  L + +N +    P 
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 106 WLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165
            L     L+ + L+ N F G +    T +P   +  +D+S+N   G              
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPL--VYFLDISNNNLQG-------------- 442

Query: 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225
               I+     M  L                             + L+ NKF GG+P+  
Sbjct: 443 ---RINSRKWDMPSLQ---------------------------MLSLARNKFFGGLPDSF 472

Query: 226 GKLNLLKGLNISHNNLTG 243
           G    L+ L++S N  +G
Sbjct: 473 GSKR-LENLDLSRNQFSG 489

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 25/203 (12%)

Query: 42  KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQIN 100
             +D+   N +GKI     +   + ++NL+ N+L GP+P  +      L  LN+ NN   
Sbjct: 72  VSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT 131

Query: 101 DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN 160
            + P     +P L+ L L +N   G I  +  I  F SL+++DL  N   G  +   L  
Sbjct: 132 GSIPR--GSIPNLETLDLSNNMLSGEIPND--IGSFSSLKVLDLGGNVLVGK-IPNSL-- 184

Query: 161 FKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG 220
                  N  S+E   +    +SN     I    G   +M+ +  I+    L  N   G 
Sbjct: 185 ------TNLTSLEFLTL----ASNQLVGQIPRELG---QMKSLKWIY----LGYNNLSGE 227

Query: 221 IPEVVGKLNLLKGLNISHNNLTG 243
           IP  +G L  L  L++ +NNLTG
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTG 250

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 35  FDSNLTHKVLD-MRMNN--FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV 91
           FDS      +D + ++N    G IP    K  +L S+NL+GN + G +PPSL +   LEV
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 92  LNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
           L++  N  N + P  L  L  L++L L  N   G
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 29/185 (15%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRS 120
           S  + S++L+G  + G +  ++    +++ +N+ NNQ++   P +       L+ L L +
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNNISVEVDYMT 178
           N F G I   +     P+L  +DLS+N  +G +    G   + K +  G N+ V      
Sbjct: 128 NNFTGSIPRGS----IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG---KI 180

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           P + +N                   LT    + L+SN+  G IP  +G++  LK + + +
Sbjct: 181 PNSLTN-------------------LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 239 NNLTG 243
           NNL+G
Sbjct: 222 NNLSG 226

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 29/198 (14%)

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
           N+F+G++P +F K   +  L+++ N L+G +     +   L++L++  N+     P+   
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL---LTGYLDNFKAMM 165
               L+ L L  N+F G +     +     L  + LS N+ +G +   L+         +
Sbjct: 474 S-KRLENLDLSRNQFSGAVPR--KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225
             N +S ++    P + S                    + +   +DLS N+  G IP+ +
Sbjct: 531 SHNQLSGQI----PASFSE-------------------MPVLSQLDLSQNQLSGEIPKNL 567

Query: 226 GKLNLLKGLNISHNNLTG 243
           G +  L  +NISHN+L G
Sbjct: 568 GNVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L L+   L G +P  +    HL+ +N+  N I  N P  L  +  L+VL L  N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 128 GENTTIVPFPSLRIIDLSHNEFTG 151
            E  ++    SLRI++L+ N  +G
Sbjct: 483 PE--SLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 5e-06
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 64  NLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
           NL SL+L+ NRL   +P  +     +L+VL++  N +    P     LP L+ L L  N 
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 123 F 123
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 12/77 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           L  ++LS N +      PP+  ++T L        +VLD+  N+FNG IP    +  +L 
Sbjct: 444 LQSINLSGNSIRGN--IPPSLGSITSL--------EVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 67  SLNLNGNRLEGPLPPSL 83
            LNLNGN L G +P +L
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 26/157 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQL-NFDSNLTHKVLDMRMNNFNGKIPRKFV------K 61
           L  LDLS+N         P     L +   + + + L +  NN  G    + +       
Sbjct: 83  LQELDLSDN------ALGPDGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLKDL 135

Query: 62  SCNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPE---L 113
              L  L L  NRLEG     L  +L     L+ LN+ NN I D       E L     L
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195

Query: 114 QVLILRSNRFWGPIGENT---TIVPFPSLRIIDLSHN 147
           +VL L +N      G +    T+    SL +++L  N
Sbjct: 196 EVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 44  LDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF 103
           LD+  N  +G+IP  F +   L+ L+L+ N+L G +P +L N   L  +N+ +N ++ + 
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Query: 104 P 104
           P
Sbjct: 588 P 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 23/67 (34%)

Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT-----------------------GLCG 246
           +DLS N F G IPE +G+L  L+ LN++ N+L+                       GLCG
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530

Query: 247 FPLLESC 253
            P L +C
Sbjct: 531 IPGLRAC 537

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 9  LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
          L  LDLSNN LT I       +  L        KVLD+  NN     P  F    +L SL
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNL--------KVLDLSGNNLTSISPEAFSGLPSLRSL 53

Query: 69 NLNGNRL 75
          +L+GN L
Sbjct: 54 DLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 63  CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
            NL +L+L+ N++   LPP L N  +LE L++  N+I D
Sbjct: 1   TNLETLDLSNNQITD-LPP-LSNLPNLETLDLSGNKITD 37

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
          K LD+  N         F    NL  L+L+GN L    P +      L  L++  N +
Sbjct: 3  KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.73
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.57
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.57
PLN03150	623	hypothetical protein; Provisional	99.52
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.33
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.31
PLN03150	623	hypothetical protein; Provisional	99.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.53
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.44
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.43
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.01
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.25
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.46
KOG4308	478	consensus LRR-containing protein [Function unknown	96.29
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.28
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.15
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.59
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.99
smart00370	26	LRR Leucine-rich repeats, outliers.	92.99
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.93
KOG4308	478	consensus LRR-containing protein [Function unknown	92.93
smart00370	26	LRR Leucine-rich repeats, outliers.	92.5
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.5
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.34
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.29
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	87.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	85.98
KOG1947	482	consensus Leucine rich repeat proteins, some prote	85.72
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.5
KOG4341	483	consensus F-box protein containing LRR [General fu	84.98
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	82.43
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.78

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=8.5e-26  Score=229.62  Aligned_cols=235  Identities=29%  Similarity=0.349  Sum_probs=143.2

Q ss_pred             CCCcccEEEcCCCCCCCCCC----CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924            5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   69 (334)
                      .+++|++|+|++|++++..|    ..+++|++|++++|           ++|++|++++|.+++.+|..++.+++|++|+
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  170 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence            46777788888887775444    25677777777776           4677777777777777777777777777777


Q ss_pred             CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924           70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus        70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      +++|.+++.+|..+.++++|++|++++|.+.+..|..++.+++|++|++++|++++.+|..+  ..+++|+.|++++|.+
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI--GGLTSLNHLDLVYNNL  248 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH--hcCCCCCEEECcCcee
Confidence            77777776677777777777777777777776667777777777777777777766666554  5666667777766666


Q ss_pred             ccccchhhHHhHHhhhhcCCcccccc-----cccCCCCCCc---------------------eeeEE---EEEeccchhh
Q 019924          150 TGVLLTGYLDNFKAMMHGNNISVEVD-----YMTPLNSSNY---------------------YESII---LTIKGIDIKM  200 (334)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~~~~~---------------------l~~~~---~~~~~~~~~~  200 (334)
                      .+..|.. +.++++|+.++...+.+.     .+........                     ++.+.   +.+.+..+..
T Consensus       249 ~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        249 TGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             ccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            6555533 444444444333221111     0001111111                     11111   1222222233


Q ss_pred             hhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924          201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      +..+++|+.|++++|.+++.+|..+..+++|+.|++++|+++
T Consensus       328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence            444566666666666666666666666666666666666665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=1.4e-25  Score=228.09  Aligned_cols=236  Identities=26%  Similarity=0.310  Sum_probs=160.8

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      ++++|++|++++|.+++..| ..+++|++|++++|             ++|++|++++|.+.+.+|..++++++|++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence            56788888888888876655 56777888888777             56777777777777777777777777777777


Q ss_pred             CCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924           71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      ++|++++.+|..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+++.+|..+  ..+++|+.|++++|.+.
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeee
Confidence            7777777777777777777777777777776677777777777777777777766666544  56666666666666666


Q ss_pred             cccchhhHHhHHhhhhcCCcccccc--------cccC------------------CCCCCceeeEEEE---Eeccchhhh
Q 019924          151 GVLLTGYLDNFKAMMHGNNISVEVD--------YMTP------------------LNSSNYYESIILT---IKGIDIKME  201 (334)
Q Consensus       151 ~~~~~~~~~~l~~L~~~~~~~~~~~--------~~~~------------------~~~~~~l~~~~~~---~~~~~~~~~  201 (334)
                      +..|.. +.++++|..++...+...        .+..                  ......+..+.+.   +.+..+..+
T Consensus       274 ~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  352 (968)
T PLN00113        274 GPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL  352 (968)
T ss_pred             ccCchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence            555433 334444433322111100        0000                  0111122333333   333334455


Q ss_pred             hhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                      ..+++|+.|++++|++++.+|+.+..+++|+.|++++|++++
T Consensus       353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~  394 (968)
T PLN00113        353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG  394 (968)
T ss_pred             hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence            567899999999999999999999999999999999999874

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.8e-24  Score=194.34  Aligned_cols=236  Identities=25%  Similarity=0.274  Sum_probs=148.8

Q ss_pred             cCCCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924            4 LGIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   68 (334)
                      .++++|+.+++.+|.++.++.  ....+++.|+|.+|             +.|+.||||.|.|+...-.+|..-.++++|
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L  178 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL  178 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence            367888888888888887776  45566888888888             678888888888885555667777788888


Q ss_pred             eCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (334)
Q Consensus        69 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  148 (334)
                      +|++|.|+..-.+.|.++.+|..|.|+.|+++...+..|..+++|+.|+|..|+|.  +.+...|.++++|+.|.|..|.
T Consensus       179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir--ive~ltFqgL~Sl~nlklqrN~  256 (873)
T KOG4194|consen  179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR--IVEGLTFQGLPSLQNLKLQRND  256 (873)
T ss_pred             eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee--eehhhhhcCchhhhhhhhhhcC
Confidence            99888888777778888888888888888888877778888888888888888873  2233344556666666666665


Q ss_pred             cccccchhhHHhHHhhhhcCCccc-----ccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCch
Q 019924          149 FTGVLLTGYLDNFKAMMHGNNISV-----EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE  223 (334)
Q Consensus       149 l~~~~~~~~~~~l~~L~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  223 (334)
                      +..... +.|-.+.++..++...+     +...+-++..+..+....+.+..+..+..+..++|++|||++|+|+...+.
T Consensus       257 I~kL~D-G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  257 ISKLDD-GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             cccccC-cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence            553322 22333333333332111     112222333333333333444444444444445555555555555544444


Q ss_pred             hhhCcCCCCeeeccCCccC
Q 019924          224 VVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       224 ~l~~l~~L~~L~Ls~N~l~  242 (334)
                      .|..+..|+.|+|++|.++
T Consensus       336 sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  336 SFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             HHHHHHHhhhhcccccchH
Confidence            4444444555555555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=2.6e-23  Score=187.02  Aligned_cols=232  Identities=19%  Similarity=0.169  Sum_probs=168.7

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      .++++|+|++|+|+.+..   ..+.+|..|.|+.|             +.|+.|+|..|+|.-.---.|.++++|+.|.|
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            468888999998887766   44556777778887             56788888888887433567888888888888


Q ss_pred             CCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924           71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      ..|.|...-.+.|..+.++++|+|+.|+++..-..|+.++++|+.|++++|.|....++..  ...++|+.|+|++|+++
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccc
Confidence            8888886677788888889999999998888777888888889999999988876666655  56788888999998888


Q ss_pred             cccchhhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEE----EeccchhhhhhhhheeEEEccCcccccCC
Q 019924          151 GVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILT----IKGIDIKMERILTIFMTIDLSSNKFQGGI  221 (334)
Q Consensus       151 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  221 (334)
                      ...+ +.+..|..|..++...+.+..+.     ...++..+....+.    +.+ ....+..+++|+.|+|.+|++....
T Consensus       331 ~l~~-~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  331 RLDE-GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             cCCh-hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCceeeecc
Confidence            6554 44677777766666444444332     22222222222221    222 2344556888888888888888555


Q ss_pred             chhhhCcCCCCeeeccCCccC
Q 019924          222 PEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       222 p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      -.+|..++.|+.|||.+|.|.
T Consensus       409 krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  409 KRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             hhhhccCcccceecCCCCcce
Confidence            677888888888888888876

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=2e-21  Score=176.37  Aligned_cols=180  Identities=26%  Similarity=0.305  Sum_probs=82.0

Q ss_pred             CCCCEEeCCCCcCc-cccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924           39 LTHKVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI  117 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  117 (334)
                      ++|+.+++.+|++. .-+|..+..+..|+.||||+|+++ +.|..+..-+++-.|+||+|+|..++...|-+++.|-.||
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            34444444444443 123444444555555555555554 4444444445555555555555443333334455555555


Q ss_pred             eecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc
Q 019924          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID  197 (334)
Q Consensus       118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (334)
                      |++|++. ..|..+  ..+..|++|+|++|.+....... +..+++|..++..+..                 -....++
T Consensus       157 LS~NrLe-~LPPQ~--RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~Tq-----------------RTl~N~P  215 (1255)
T KOG0444|consen  157 LSNNRLE-MLPPQI--RRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQ-----------------RTLDNIP  215 (1255)
T ss_pred             cccchhh-hcCHHH--HHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccccc-----------------chhhcCC
Confidence            5555543 222222  34444555555555443211000 1112222222221110                 0011111


Q ss_pred             hhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924          198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                       .....+.+|..+|+|.|.+. .+|+.+-++++|+.|+||+|+|+
T Consensus       216 -tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  216 -TSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             -CchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence             12223566666777777766 66666666777777777777666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=4.5e-21  Score=174.13  Aligned_cols=210  Identities=24%  Similarity=0.288  Sum_probs=119.4

Q ss_pred             CCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC--------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924            6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   69 (334)
                      +.+|+.|.+++|++..+..  ..++.|+.+.+..|              ..|++||||+|+++ +.|..+..-+++-.|+
T Consensus        54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN  132 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN  132 (1255)
T ss_pred             HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence            3455555666665554433  44445555555444              45566677777766 6666666666666777


Q ss_pred             CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc------------------------
Q 019924           70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG------------------------  125 (334)
Q Consensus        70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~------------------------  125 (334)
                      ||+|+|......-|.+++.|-+||||+|++.. +|..+..+..|++|+|++|.+..                        
T Consensus       133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             cccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence            77777664333445566666667777776665 44455666666666666666521                        


Q ss_pred             -cCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhh
Q 019924          126 -PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL  204 (334)
Q Consensus       126 -~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  204 (334)
                       .+|.++  ..+.+|+.+|+|+|.+... | .++-++.+|..++..++                   .+..+.... ...
T Consensus       212 ~N~Ptsl--d~l~NL~dvDlS~N~Lp~v-P-ecly~l~~LrrLNLS~N-------------------~iteL~~~~-~~W  267 (1255)
T KOG0444|consen  212 DNIPTSL--DDLHNLRDVDLSENNLPIV-P-ECLYKLRNLRRLNLSGN-------------------KITELNMTE-GEW  267 (1255)
T ss_pred             hcCCCch--hhhhhhhhccccccCCCcc-h-HHHhhhhhhheeccCcC-------------------ceeeeeccH-HHH
Confidence             122222  3444555555555555422 2 23344444444333222                   222222211 124


Q ss_pred             hheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      .+|++|+||.|+++ ..|+++.+++.|+.|.+.+|+++
T Consensus       268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence            56777788888887 77777778888888877777775

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.78  E-value=1.7e-21  Score=168.25  Aligned_cols=227  Identities=22%  Similarity=0.288  Sum_probs=140.5

Q ss_pred             ccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924            9 LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (334)
Q Consensus         9 L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~   74 (334)
                      ++.+++++|.++...+  ..+..+++|++.+|            ..++.++.++|++. .+|..+..+.++..|+.++|.
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~  125 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNE  125 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccc
Confidence            4455556665554443  34445555555555            23455666777766 666666666777777777777


Q ss_pred             cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus        75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      +. .+|++++.+-.++.++..+|+++. .|..+..+.+|..+++.+|++....+..+   .++.|++||+.+|.+... |
T Consensus       126 ~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i---~m~~L~~ld~~~N~L~tl-P  199 (565)
T KOG0472|consen  126 LK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHI---AMKRLKHLDCNSNLLETL-P  199 (565)
T ss_pred             ee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHH---HHHHHHhcccchhhhhcC-C
Confidence            66 556666666677777777777665 45556666666666777776654444433   266666666666666533 3


Q ss_pred             hhhHHhHHhhhhcCCcccccccccCCCCCCce---eeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCC
Q 019924          155 TGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY---ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL  231 (334)
Q Consensus       155 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  231 (334)
                      .. ++.+.+|..++...+++..++.......+   ....+.+.-++.+..+.++++..|||.+|+++ +.|+.+..+.+|
T Consensus       200 ~~-lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL  277 (565)
T KOG0472|consen  200 PE-LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL  277 (565)
T ss_pred             hh-hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence            23 55555555555544444444444333322   22333444455566666778888888888887 788888888888


Q ss_pred             CeeeccCCccCCC
Q 019924          232 KGLNISHNNLTGL  244 (334)
Q Consensus       232 ~~L~Ls~N~l~~l  244 (334)
                      ++||+|+|.|+++
T Consensus       278 ~rLDlSNN~is~L  290 (565)
T KOG0472|consen  278 ERLDLSNNDISSL  290 (565)
T ss_pred             hhhcccCCccccC
Confidence            8888888888754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=2.6e-19  Score=154.87  Aligned_cols=175  Identities=26%  Similarity=0.341  Sum_probs=117.1

Q ss_pred             CCCEEeCCCCcCccccCcCccCCCC---ccEEeCCCCccccCCCccccCCCCCCEE-EccCCcCCcCCChhhhcCCCCCE
Q 019924           40 THKVLDMRMNNFNGKIPRKFVKSCN---LTSLNLNGNRLEGPLPPSLVNCHHLEVL-NVGNNQINDNFPNWLEILPELQV  115 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~Ls~N~l~~~~~~~l~~l~~L~~  115 (334)
                      +.++|+++.-+++ .+|+......+   ....+++.|++. ++|..+..++.+.+. ++++|.+ +.+|..++.+++|..
T Consensus       363 ~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~  439 (565)
T KOG0472|consen  363 TTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTF  439 (565)
T ss_pred             hhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhccee
Confidence            3455555555555 33433222222   556666666666 566666555554433 3444444 447888889999999


Q ss_pred             EEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEec
Q 019924          116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKG  195 (334)
Q Consensus       116 L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (334)
                      |+|++|.+. .+|..+  +.+..|+.||+++|++... | .+.-.+..+...-.                   ...++..
T Consensus       440 L~L~NN~Ln-~LP~e~--~~lv~Lq~LnlS~NrFr~l-P-~~~y~lq~lEtlla-------------------s~nqi~~  495 (565)
T KOG0472|consen  440 LDLSNNLLN-DLPEEM--GSLVRLQTLNLSFNRFRML-P-ECLYELQTLETLLA-------------------SNNQIGS  495 (565)
T ss_pred             eecccchhh-hcchhh--hhhhhhheecccccccccc-h-HHHhhHHHHHHHHh-------------------ccccccc
Confidence            999999874 566665  6788899999999988643 3 22222222222111                   1224455


Q ss_pred             cchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924          196 IDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       196 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      ++..-...+.+|+.|||.+|.+. .+|..+++|.+|+.|++++|+|.
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            56666667999999999999998 89999999999999999999986

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.73  E-value=2.1e-17  Score=159.39  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=34.6

Q ss_pred             hhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       204 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      +..|+.|++++|+|+ .+|..+.++++|+.|+|++|+|++.
T Consensus       421 ~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        421 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            356788999999998 7899999999999999999999853

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.73  E-value=1.5e-19  Score=155.90  Aligned_cols=209  Identities=23%  Similarity=0.240  Sum_probs=153.9

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCC-CccccCCCccccCC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNC   86 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l   86 (334)
                      .-+.++|..|.|+.+++..|+.+..|        +.||||+|+|+.+.|++|.++.+|..|-+.+ |+|+....+.|.++
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~L--------RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRL--------RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhh--------ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            45678999999999998888888777        8999999999988899999998887776665 88886666778888


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCC-CC----------------------------------
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGE-NT----------------------------------  131 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~----------------------------------  131 (334)
                      .+|+.|.+.-|++.-...+.|..+++|..|.+..|.+. .++. .+                                  
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            88888888888877766777777777777777766651 1111 00                                  


Q ss_pred             --------------------------------------------------CCCCCCCccEEEecCCccccccchhhHHhH
Q 019924          132 --------------------------------------------------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNF  161 (334)
Q Consensus       132 --------------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  161 (334)
                                                                        .|..+++|+.|++++|+++++.+ ++|..+
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~  297 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-GAFEGA  297 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-hhhcch
Confidence                                                              13345566666666666654433 334444


Q ss_pred             HhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCcc
Q 019924          162 KAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL  241 (334)
Q Consensus       162 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  241 (334)
                      ..+..+.                   ...+.+..+...++..+..|+.|+|.+|+|+...|.+|..+.+|..|+|-.|++
T Consensus       298 a~l~eL~-------------------L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  298 AELQELY-------------------LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhh-------------------cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            4443332                   233445556667788899999999999999999999999999999999999999


Q ss_pred             CCCC
Q 019924          242 TGLC  245 (334)
Q Consensus       242 ~~l~  245 (334)
                      .+-|
T Consensus       359 ~CnC  362 (498)
T KOG4237|consen  359 NCNC  362 (498)
T ss_pred             cCcc
Confidence            8655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=8e-17  Score=156.09  Aligned_cols=216  Identities=23%  Similarity=0.262  Sum_probs=128.1

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (334)
                      .+...|+++++.++.++..-.++++.|++++|          .+|++|++++|+++ .+|..+.  .+|+.|++++|+++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~  254 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT  254 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence            34567777777777766545567777777777          46788888888887 4565443  36788888888877


Q ss_pred             cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchh
Q 019924           77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG  156 (334)
Q Consensus        77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  156 (334)
                       .+|..+.  .+|+.|++++|+++. +|..+.  ++|+.|++++|++++ +|..+    .++|+.|++++|.++.. |..
T Consensus       255 -~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l----p~sL~~L~Ls~N~Lt~L-P~~  322 (754)
T PRK15370        255 -ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL----PSGITHLNVQSNSLTAL-PET  322 (754)
T ss_pred             -cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc----hhhHHHHHhcCCccccC-Ccc
Confidence             5666553  468888888888775 455443  478888888887753 33322    24677777777777653 322


Q ss_pred             hHHhHHhhhhcCCcccccccccCC--CCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCee
Q 019924          157 YLDNFKAMMHGNNISVEVDYMTPL--NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL  234 (334)
Q Consensus       157 ~~~~l~~L~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  234 (334)
                      ...+++.|...++   .+..++..  .....+....+.+..++..   ..+.|+.|+|++|+++ .+|..+.  ..|+.|
T Consensus       323 l~~sL~~L~Ls~N---~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~---lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~L  393 (754)
T PRK15370        323 LPPGLKTLEAGEN---ALTSLPASLPPELQVLDVSKNQITVLPET---LPPTITTLDVSRNALT-NLPENLP--AALQIM  393 (754)
T ss_pred             ccccceeccccCC---ccccCChhhcCcccEEECCCCCCCcCChh---hcCCcCEEECCCCcCC-CCCHhHH--HHHHHH
Confidence            2333333322222   11111110  1111111111222222221   2357888888888887 5666554  357788


Q ss_pred             eccCCccCCCCC
Q 019924          235 NISHNNLTGLCG  246 (334)
Q Consensus       235 ~Ls~N~l~~l~~  246 (334)
                      ++++|+|++++.
T Consensus       394 dLs~N~L~~LP~  405 (754)
T PRK15370        394 QASRNNLVRLPE  405 (754)
T ss_pred             hhccCCcccCch
Confidence            888888876543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=4.9e-19  Score=136.59  Aligned_cols=104  Identities=32%  Similarity=0.482  Sum_probs=57.3

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  121 (334)
                      +.|-||+|+++ .+|..+..+.+|+.|++.+|+|+ .+|.++..+++|+.|+++-|++.. .|..|+.+|.|+.||+.+|
T Consensus        36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhcccc
Confidence            44555556555 44555555556666666666655 455555556666666666555543 4555555666666666555


Q ss_pred             cCcc-cCCCCCCCCCCCCccEEEecCCccc
Q 019924          122 RFWG-PIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus       122 ~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      .+.. ..|..+  ..++.|+.|++++|.+.
T Consensus       113 nl~e~~lpgnf--f~m~tlralyl~dndfe  140 (264)
T KOG0617|consen  113 NLNENSLPGNF--FYMTTLRALYLGDNDFE  140 (264)
T ss_pred             ccccccCCcch--hHHHHHHHHHhcCCCcc
Confidence            5532 233333  44555555556665554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=3.5e-17  Score=158.56  Aligned_cols=214  Identities=19%  Similarity=0.275  Sum_probs=142.9

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (334)
                      ++|+.|++++|.++.++...+.+|+.|++++|          ..|+.|++++|++. .+|..+.  .+|+.|++++|+++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence            46889999999999887766678999999988          47889999999998 6676654  47899999999998


Q ss_pred             cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchh
Q 019924           77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG  156 (334)
Q Consensus        77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  156 (334)
                       .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|+++. +|...    .++|+.|++++|.+++. |..
T Consensus       276 -~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~Lt~L-P~~  343 (754)
T PRK15370        276 -CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL----PPGLKTLEAGENALTSL-PAS  343 (754)
T ss_pred             -ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc----cccceeccccCCccccC-Chh
Confidence             5676654  589999999999887 454332  467778888887753 34322    35677777777777653 333


Q ss_pred             hHHhHHhhhhcCCcccccccccC--CCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhh----hCcCC
Q 019924          157 YLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV----GKLNL  230 (334)
Q Consensus       157 ~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~  230 (334)
                      ...++..|...+   +.+..++.  ......+....+.+..++...   ...|+.|++++|+++ .+|+.+    ..++.
T Consensus       344 l~~sL~~L~Ls~---N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l---~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~  416 (754)
T PRK15370        344 LPPELQVLDVSK---NQITVLPETLPPTITTLDVSRNALTNLPENL---PAALQIMQASRNNLV-RLPESLPHFRGEGPQ  416 (754)
T ss_pred             hcCcccEEECCC---CCCCcCChhhcCCcCEEECCCCcCCCCCHhH---HHHHHHHhhccCCcc-cCchhHHHHhhcCCC
Confidence            333333332222   22221111  011222222223333444333   347899999999998 666554    44588


Q ss_pred             CCeeeccCCccC
Q 019924          231 LKGLNISHNNLT  242 (334)
Q Consensus       231 L~~L~Ls~N~l~  242 (334)
                      +..|++.+|+++
T Consensus       417 l~~L~L~~Npls  428 (754)
T PRK15370        417 PTRIIVEYNPFS  428 (754)
T ss_pred             ccEEEeeCCCcc
Confidence            899999999987

>PLN03210 Resistant to P

Probab=99.68  E-value=9.4e-16  Score=157.55  Aligned_cols=231  Identities=18%  Similarity=0.159  Sum_probs=111.7

Q ss_pred             CcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            7 ATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      .+|+.|++++|.+.....  ..+++|+.|+++++            ++|++|++++|.....+|..+..+++|+.|++++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            445555555555544322  33445555555443            3455555555443335555555555555555555


Q ss_pred             CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCC-------------------
Q 019924           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI-------------------  133 (334)
Q Consensus        73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------  133 (334)
                      |.....+|..+ ++++|+.|++++|.....+|..   .++|++|++++|.+. .+|....+                   
T Consensus       691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhcccc
Confidence            43222444433 4455555555554333323321   234555555555542 22221100                   


Q ss_pred             ---------CCCCCccEEEecCCccccccchhhHHhHHhhhhcCCccc-ccccccCCCCCCceeeEEEEEeccchhhhhh
Q 019924          134 ---------VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV-EVDYMTPLNSSNYYESIILTIKGIDIKMERI  203 (334)
Q Consensus       134 ---------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  203 (334)
                               ...++|+.|++++|...+.+|.. ++++++|..++.... ....++.......+..+.+.....-...+..
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc
Confidence                     11235666666666555445543 455555555444221 1111211111112222222111111122223


Q ss_pred             hhheeEEEccCcccccCCchhhhCcCCCCeeeccC-CccCCC
Q 019924          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH-NNLTGL  244 (334)
Q Consensus       204 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~l  244 (334)
                      .++|+.|+|++|.++ .+|.++..+++|+.|++++ |+++.+
T Consensus       845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence            467888999999887 7888888899999999887 455543

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.66  E-value=7.4e-16  Score=148.81  Aligned_cols=211  Identities=20%  Similarity=0.241  Sum_probs=103.6

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP   78 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~   78 (334)
                      .-..||+++|.++.+++.-..+|+.|++.+|         ++|++|++++|+|+ .+|..   .++|+.|++++|.++ .
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~  276 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-H  276 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-h
Confidence            3456677777776665544456666666666         45666777777666 33432   234555555555554 2


Q ss_pred             CCcccc-----------------CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccE
Q 019924           79 LPPSLV-----------------NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI  141 (334)
Q Consensus        79 ~p~~l~-----------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  141 (334)
                      +|..+.                 ..++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|.     ...+|+.
T Consensus       277 Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~-----lp~~Lq~  346 (788)
T PRK15387        277 LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT-----LPSGLQE  346 (788)
T ss_pred             hhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc-----cccccce
Confidence            332111                 12344455555554444 2221   1234444444444432 221     1136788


Q ss_pred             EEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCC
Q 019924          142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI  221 (334)
Q Consensus       142 L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  221 (334)
                      |++++|++++..+  ...++..|...++   .+..++...  ..+..+.+..+.+.. .+...++|+.|++++|+++ .+
T Consensus       347 LdLS~N~Ls~LP~--lp~~L~~L~Ls~N---~L~~LP~l~--~~L~~LdLs~N~Lt~-LP~l~s~L~~LdLS~N~Ls-sI  417 (788)
T PRK15387        347 LSVSDNQLASLPT--LPSELYKLWAYNN---RLTSLPALP--SGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SL  417 (788)
T ss_pred             EecCCCccCCCCC--CCcccceehhhcc---ccccCcccc--cccceEEecCCcccC-CCCcccCCCEEEccCCcCC-CC
Confidence            8888888875432  1333333332222   111121111  112222222222221 1112356777888888877 45


Q ss_pred             chhhhCcCCCCeeeccCCccCCCC
Q 019924          222 PEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       222 p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      |...   .+|+.|++++|+|+.++
T Consensus       418 P~l~---~~L~~L~Ls~NqLt~LP  438 (788)
T PRK15387        418 PMLP---SGLLSLSVYRNQLTRLP  438 (788)
T ss_pred             Ccch---hhhhhhhhccCcccccC
Confidence            6432   35677888888877553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.4e-18  Score=132.81  Aligned_cols=132  Identities=26%  Similarity=0.375  Sum_probs=73.1

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      ++++++.|.||+|+++.++|. ...|.        +|+.|++++|+++ .+|.+++.+++|+.|+++-|++. .+|.+|+
T Consensus        31 ~~s~ITrLtLSHNKl~~vppn-ia~l~--------nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg   99 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPN-IAELK--------NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG   99 (264)
T ss_pred             chhhhhhhhcccCceeecCCc-HHHhh--------hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC
Confidence            345555556666666554441 11121        2255566666665 55666666666666666666665 5566666


Q ss_pred             CCCCCCEEEccCCcCC-cCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924           85 NCHHLEVLNVGNNQIN-DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      .++.|+.||+.+|.+. ...|..|..++.|+.|+++.|.|. .+|...  +++++|+.|.+.+|.+-
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dv--g~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDV--GKLTNLQILSLRDNDLL  163 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhh--hhhcceeEEeeccCchh
Confidence            6666666666666553 234555555666666666666652 344433  55666666666666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.63  E-value=6.4e-17  Score=153.03  Aligned_cols=195  Identities=21%  Similarity=0.207  Sum_probs=111.3

Q ss_pred             CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhh-----------
Q 019924           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-----------  108 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~-----------  108 (334)
                      +|+.++..+|+++ .+|..+...++|+.|.+.+|.+. .+|+...++++|++|+|..|++...++..+.           
T Consensus       265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~  342 (1081)
T KOG0618|consen  265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV  342 (1081)
T ss_pred             cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence            3333344444332 33333333333444444444443 3555566677777777777777653222111           


Q ss_pred             --------------cCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCccccc
Q 019924          109 --------------ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV  174 (334)
Q Consensus       109 --------------~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~  174 (334)
                                    .++.|+.|++.+|.++...-..+  .++..|+.|+|++|++.. .|.+.+.++..|+.++...+..
T Consensus       343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             hhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccchh
Confidence                          12235566666666655444433  677889999999998874 4556688888888777755544


Q ss_pred             ccccC----CCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCcc
Q 019924          175 DYMTP----LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL  241 (334)
Q Consensus       175 ~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  241 (334)
                      ..++.    ......+....+.+...+  -+..++.|+.+|+|.|+++...-..-...++|++||+++|.-
T Consensus       420 ~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  420 TTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            44321    112222222333333333  334478899999999999854322222338999999999973

>PLN03210 Resistant to P

Probab=99.59  E-value=1.7e-14  Score=148.28  Aligned_cols=141  Identities=18%  Similarity=0.220  Sum_probs=91.3

Q ss_pred             CCCcccEEEcCCCCCCC------CCC----CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCC
Q 019924            5 GIATLYYLDLSNNFLTN------IEY----FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSC   63 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~------~~~----~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~   63 (334)
                      +|++|+.|.+.++....      ..|    ....+|+.|.+.++           .+|++|++++|++. .++..+..++
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~  634 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLT  634 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccccccccCC
Confidence            56777777776554221      111    12345666766665           46777888887776 5666677777


Q ss_pred             CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEE
Q 019924           64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID  143 (334)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  143 (334)
                      +|+.|+++++.....+|. +..+++|++|++++|.....+|..++.+++|+.|++++|...+.+|...   .+++|+.|+
T Consensus       635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~  710 (1153)
T PLN03210        635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLN  710 (1153)
T ss_pred             CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEe
Confidence            888888877654335553 6677778888887776555577777777778888887765444555432   466677777


Q ss_pred             ecCCccc
Q 019924          144 LSHNEFT  150 (334)
Q Consensus       144 Ls~N~l~  150 (334)
                      +++|...
T Consensus       711 Lsgc~~L  717 (1153)
T PLN03210        711 LSGCSRL  717 (1153)
T ss_pred             CCCCCCc
Confidence            7766543

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.59  E-value=8.8e-16  Score=137.00  Aligned_cols=186  Identities=20%  Similarity=0.192  Sum_probs=99.9

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCC---ccEEeCCCCcccc----CCCccccCC-CCCCEEEccCCcCCcC----CChh
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCN---LTSLNLNGNRLEG----PLPPSLVNC-HHLEVLNVGNNQINDN----FPNW  106 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~~~~  106 (334)
                      ++|+.|++++|.+.+..+..+..+.+   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.    .+..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            46677777777776545555544444   7777777777652    123344455 6777777777777632    2334


Q ss_pred             hhcCCCCCEEEeecccCcccCCCCC--CCCCCCCccEEEecCCccccccchhhHH---hHHhhhhcCCcccccccccCCC
Q 019924          107 LEILPELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLD---NFKAMMHGNNISVEVDYMTPLN  181 (334)
Q Consensus       107 l~~l~~L~~L~L~~N~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~l~~L~~~~~~~~~~~~~~~~~  181 (334)
                      +..+++|++|++++|.+++.....+  .+..+++|+.|++++|.+.+........   .+++|..++...          
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~----------  230 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD----------  230 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC----------
Confidence            4556677777777777653211100  1134457777777777765432221111   111122211110          


Q ss_pred             CCCceeeEEEEEeccch-hhhhh----hhheeEEEccCccccc----CCchhhhCcCCCCeeeccCCccCC
Q 019924          182 SSNYYESIILTIKGIDI-KMERI----LTIFMTIDLSSNKFQG----GIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       182 ~~~~l~~~~~~~~~~~~-~~~~~----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                               +.+.+... .....    .+.|+.|++++|.+++    .++..+..+++|+++++++|+++.
T Consensus       231 ---------n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         231 ---------NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             ---------CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence                     00111000 01111    2578888888888862    234455666788888888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.57  E-value=6.5e-16  Score=137.85  Aligned_cols=219  Identities=23%  Similarity=0.266  Sum_probs=144.1

Q ss_pred             CCCcccEEEcCCCCCCCCCC---------CCCCCCCeEECCCC-------------CC---CCEEeCCCCcCcc----cc
Q 019924            5 GIATLYYLDLSNNFLTNIEY---------FPPTNMTQLNFDSN-------------LT---HKVLDMRMNNFNG----KI   55 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---------~~~~~L~~L~l~~n-------------~~---L~~L~Ls~N~l~~----~~   55 (334)
                      ..++++.|+++++.+.+...         ..+++|+.|++++|             ..   |++|++++|++++    .+
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l  128 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL  128 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence            34668888888887763111         34668888888887             23   8999999999873    33


Q ss_pred             CcCccCC-CCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcC----CChhhhcCCCCCEEEeecccCccc
Q 019924           56 PRKFVKS-CNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGP  126 (334)
Q Consensus        56 p~~~~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~  126 (334)
                      ...+..+ ++|+.|++++|.+++.    ++..+..+.+|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            3455666 8999999999998842    344567778999999999998742    233455667999999999988633


Q ss_pred             CCCCC--CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc-------
Q 019924          127 IGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-------  197 (334)
Q Consensus       127 ~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------  197 (334)
                      ....+  .+..+++|+.|++++|.+++.........+..    .              ...+..+.+..+.+.       
T Consensus       209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~----~--------------~~~L~~L~l~~n~i~~~~~~~l  270 (319)
T cd00116         209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS----P--------------NISLLTLSLSCNDITDDGAKDL  270 (319)
T ss_pred             HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc----c--------------CCCceEEEccCCCCCcHHHHHH
Confidence            22111  23567899999999999876433222222210    0              001111222222221       


Q ss_pred             hhhhhhhhheeEEEccCcccccC----CchhhhCc-CCCCeeeccCCcc
Q 019924          198 IKMERILTIFMTIDLSSNKFQGG----IPEVVGKL-NLLKGLNISHNNL  241 (334)
Q Consensus       198 ~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l  241 (334)
                      ......++.|+.+++++|.++..    ....+... +.|+.+++.+|++
T Consensus       271 ~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         271 AEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            11223357899999999999955    44445555 7899999999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.57  E-value=3.2e-16  Score=148.38  Aligned_cols=139  Identities=24%  Similarity=0.269  Sum_probs=85.2

Q ss_pred             cccE-EEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcccc
Q 019924            8 TLYY-LDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG   77 (334)
Q Consensus         8 ~L~~-L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~   77 (334)
                      .++. |||.+|.+.......+.+|+.+....|         ++++.|+.++|.++...+.  ..-.+|+++++++|+++ 
T Consensus       178 ~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-  254 (1081)
T KOG0618|consen  178 NLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-  254 (1081)
T ss_pred             hhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-
Confidence            3444 788888777333345555555555444         5666666667766622221  12246777777777776 


Q ss_pred             CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924           78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus        78 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      .+|+.+..+.+|+.++..+|.++. .|..+...++|+.|....|.+. .+|...  ..+++|++|||..|++...+
T Consensus       255 ~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~l--e~~~sL~tLdL~~N~L~~lp  326 (1081)
T KOG0618|consen  255 NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFL--EGLKSLRTLDLQSNNLPSLP  326 (1081)
T ss_pred             cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcc--cccceeeeeeehhccccccc
Confidence            455667777777777777777754 5666666677777777777663 334333  45667777777777776443

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=1e-14  Score=140.52  Aligned_cols=119  Identities=30%  Similarity=0.508  Sum_probs=100.6

Q ss_pred             CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhc
Q 019924           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG  167 (334)
Q Consensus        88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~  167 (334)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+  ..+++|+.|++++|++++.+|.. +.        
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~--~~l~~L~~LdLs~N~lsg~iP~~-l~--------  487 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSFNGSIPES-LG--------  487 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECCCCCCCCCCchH-Hh--------
Confidence            37889999999999999999999999999999999998888876  88999999999999999887754 22        


Q ss_pred             CCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCc-CCCCeeeccCCccCCCCC
Q 019924          168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL-NLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~l~~  246 (334)
                                                         .+++|+.|+|++|+++|.+|..+... .++..+++++|+  ++|+
T Consensus       488 -----------------------------------~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~--~lc~  530 (623)
T PLN03150        488 -----------------------------------QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA--GLCG  530 (623)
T ss_pred             -----------------------------------cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc--cccC
Confidence                                               26678999999999999999988764 567789999996  5788


Q ss_pred             CCccCCCC
Q 019924          247 FPLLESCN  254 (334)
Q Consensus       247 ~~~~~~c~  254 (334)
                      .|....|.
T Consensus       531 ~p~l~~C~  538 (623)
T PLN03150        531 IPGLRACG  538 (623)
T ss_pred             CCCCCCCc
Confidence            77666663

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.52  E-value=5.7e-16  Score=134.05  Aligned_cols=122  Identities=21%  Similarity=0.243  Sum_probs=101.2

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccC-CcCCcCCChhhhcCCCCCEEEeec
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      ..++|..|+|+...|.+|..+.+|+.|||++|+|+..-|++|.++.+|..|-+.+ |+|+......|+++.+|+.|.+.-
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            6689999999988899999999999999999999988999999999988777766 999998888999999999999999


Q ss_pred             ccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus       121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      |++.-...+.+  ..+++|..|.+.+|.+..+ ....+..+..++.
T Consensus       150 n~i~Cir~~al--~dL~~l~lLslyDn~~q~i-~~~tf~~l~~i~t  192 (498)
T KOG4237|consen  150 NHINCIRQDAL--RDLPSLSLLSLYDNKIQSI-CKGTFQGLAAIKT  192 (498)
T ss_pred             hhhcchhHHHH--HHhhhcchhcccchhhhhh-ccccccchhccch
Confidence            99865544444  8899999999999988743 3333455544443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.33  E-value=1.1e-13  Score=125.11  Aligned_cols=170  Identities=25%  Similarity=0.374  Sum_probs=135.2

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  121 (334)
                      ...|++.|++. ++|..++.+..|+.+.|..|.+. .+|..+.++..|.+||++.|++.. .|..+..++ |+.|-+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecC
Confidence            66899999998 88998888889999999999998 788899999999999999999987 677777666 899999999


Q ss_pred             cCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhh
Q 019924          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (334)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (334)
                      +++ .+|..+  +....|..||.+.|++....+  -+..+.++..++...+....+                   +.+..
T Consensus       154 kl~-~lp~~i--g~~~tl~~ld~s~nei~slps--ql~~l~slr~l~vrRn~l~~l-------------------p~El~  209 (722)
T KOG0532|consen  154 KLT-SLPEEI--GLLPTLAHLDVSKNEIQSLPS--QLGYLTSLRDLNVRRNHLEDL-------------------PEELC  209 (722)
T ss_pred             ccc-cCCccc--ccchhHHHhhhhhhhhhhchH--HhhhHHHHHHHHHhhhhhhhC-------------------CHHHh
Confidence            984 667766  678889999999999875533  256666665555433222221                   11111


Q ss_pred             hhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                        .-.|..||+|.|+++ .+|-.|.+|+.|++|-|.+|+++
T Consensus       210 --~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  210 --SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             --CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence              124789999999998 89999999999999999999998

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.31  E-value=3.9e-12  Score=101.84  Aligned_cols=107  Identities=27%  Similarity=0.401  Sum_probs=42.8

Q ss_pred             CCCEEeCCCCcCccccCcCcc-CCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhh-hcCCCCCEEE
Q 019924           40 THKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPELQVLI  117 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~  117 (334)
                      .+++|+|++|+|+. + +.++ .+.+|+.|++++|.|+. ++ .+..+++|++|++++|+|+.. +..+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            34888999999983 3 3454 57889999999999984 43 588899999999999999874 4444 4689999999


Q ss_pred             eecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus       118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      +++|+|.. +.+...+..+++|+.|++.+|.++..
T Consensus        95 L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   95 LSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -TTS---S-CCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CcCCcCCC-hHHhHHHHcCCCcceeeccCCcccch
Confidence            99999854 33333457789999999999998754

>PLN03150 hypothetical protein; Provisional

Probab=99.30  E-value=5.4e-12  Score=121.76  Aligned_cols=108  Identities=29%  Similarity=0.411  Sum_probs=82.5

Q ss_pred             CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      ++.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|..++.+++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            46778888888888888888888888888888888877887788888888888888888877888888888888888888


Q ss_pred             ccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus       121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      |++++.+|..+. ....++..+++.+|..
T Consensus       500 N~l~g~iP~~l~-~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALG-GRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHh-hccccCceEEecCCcc
Confidence            888777776541 1124556677777754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=4.6e-12  Score=116.50  Aligned_cols=173  Identities=29%  Similarity=0.400  Sum_probs=108.7

Q ss_pred             CEEeCCCCcCccccCcCccCCC-CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      +.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|++.. +|...+..+.|+.|++++
T Consensus       119 ~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         119 TSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             eEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccC
Confidence            67777777777 5566666664 7777777777777 555567777777777777777776 444444667777777777


Q ss_pred             ccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhh
Q 019924          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM  200 (334)
Q Consensus       121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  200 (334)
                      |++. .+|...  .....|++|++++|.+...+  ..+.++..+..+.......                   ... ...
T Consensus       196 N~i~-~l~~~~--~~~~~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~n~~-------------------~~~-~~~  250 (394)
T COG4886         196 NKIS-DLPPEI--ELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSNNKL-------------------EDL-PES  250 (394)
T ss_pred             Cccc-cCchhh--hhhhhhhhhhhcCCcceecc--hhhhhcccccccccCCcee-------------------eec-cch
Confidence            7774 333322  23445777777777422221  1133333332222101000                   000 223


Q ss_pred             hhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ...++.++.|++++|.++ .++. ++.+.+++.|++++|.++..
T Consensus       251 ~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         251 IGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             hccccccceecccccccc-cccc-ccccCccCEEeccCcccccc
Confidence            334677999999999998 5554 88999999999999998754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=1.5e-12  Score=104.13  Aligned_cols=127  Identities=29%  Similarity=0.380  Sum_probs=50.5

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCC-CCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~-~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l   83 (334)
                      +..+++.|+|++|.|+.+..  +. .+..|        +.|++++|.|+. + ..+..++.|++|++++|+|+ .+++.+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L--------~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l   83 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN--LGATLDKL--------EVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGL   83 (175)
T ss_dssp             -------------------S----TT-TT----------EEE-TTS--S----TT----TT--EEE--SS----S-CHHH
T ss_pred             cccccccccccccccccccc--hhhhhcCC--------CEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccch
Confidence            34568999999999987643  22 33344        889999999984 3 35788999999999999999 455445


Q ss_pred             -cCCCCCCEEEccCCcCCcCC-ChhhhcCCCCCEEEeecccCcccCC-CCCCCCCCCCccEEEe
Q 019924           84 -VNCHHLEVLNVGNNQINDNF-PNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDL  144 (334)
Q Consensus        84 -~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~L  144 (334)
                       ..+++|++|++++|+|.... -..++.+++|+.|++.+|+++.... ..+.+..+|+|+.||-
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence             46899999999999997632 2456789999999999999864311 1123456888888874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.25  E-value=1.4e-12  Score=109.61  Aligned_cols=42  Identities=31%  Similarity=0.421  Sum_probs=34.8

Q ss_pred             hhheeEEEccCcccccC-CchhhhCcCCCCeeeccCCccCCCC
Q 019924          204 LTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       204 l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      +.+|..||+++|+|... -...++++|.|+.+.|.+|++.++.
T Consensus       373 LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  373 LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            66789999999999732 2356899999999999999998754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.3e-12  Score=114.90  Aligned_cols=199  Identities=21%  Similarity=0.219  Sum_probs=119.5

Q ss_pred             CCCcccEEEcCCCCCCCCCC----CCCCCCCeEECCCC---------------CCCCEEeCCCCcCccccCcC-ccCCCC
Q 019924            5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRK-FVKSCN   64 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n---------------~~L~~L~Ls~N~l~~~~p~~-~~~l~~   64 (334)
                      ++++|+...|.+......+.    ..+++++.||++.|               ++|+.|+++.|.+....... -..+.+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            56778888888887765442    45667777777776               66777777777665221111 123566


Q ss_pred             ccEEeCCCCccccC-CCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEE
Q 019924           65 LTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID  143 (334)
Q Consensus        65 L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  143 (334)
                      |+.|.++.|.++.. +......+++|+.|++..|...........-+..|++|||++|++.. .+.....+.++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence            77777777777621 22234456677777777774222222233345667777777777632 22222345667777777


Q ss_pred             ecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccC-Cc
Q 019924          144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-IP  222 (334)
Q Consensus       144 Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p  222 (334)
                      ++.+.+.+......    ..+                                  +-...+++|++|+++.|++... .-
T Consensus       278 ls~tgi~si~~~d~----~s~----------------------------------~kt~~f~kL~~L~i~~N~I~~w~sl  319 (505)
T KOG3207|consen  278 LSSTGIASIAEPDV----ESL----------------------------------DKTHTFPKLEYLNISENNIRDWRSL  319 (505)
T ss_pred             ccccCcchhcCCCc----cch----------------------------------hhhcccccceeeecccCcccccccc
Confidence            77776654321110    000                                  0111268899999999999632 23


Q ss_pred             hhhhCcCCCCeeeccCCccC
Q 019924          223 EVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       223 ~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      ..+..+++|+.|.+..|.++
T Consensus       320 ~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  320 NHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             chhhccchhhhhhccccccc
Confidence            45667788899999999887

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=2.9e-12  Score=107.79  Aligned_cols=133  Identities=22%  Similarity=0.298  Sum_probs=67.6

Q ss_pred             CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEE
Q 019924           63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII  142 (334)
Q Consensus        63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  142 (334)
                      +.|+++||++|.|+ .+.++..-.++++.|++|+|.+...  +.++.+++|+.|||++|.++....- -  ..+.+.++|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw-h--~KLGNIKtL  357 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW-H--LKLGNIKTL  357 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh-H--hhhcCEeee
Confidence            34666666666665 4555555556666666666666542  2255666666666666665322111 1  234555666


Q ss_pred             EecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCc
Q 019924          143 DLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP  222 (334)
Q Consensus       143 ~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  222 (334)
                      .++.|.+...   +-+..+-+|..++..++.+..+...                  .....+|.|+.+.|.+|.+. .+|
T Consensus       358 ~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV------------------~~IG~LPCLE~l~L~~NPl~-~~v  415 (490)
T KOG1259|consen  358 KLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEV------------------NHIGNLPCLETLRLTGNPLA-GSV  415 (490)
T ss_pred             ehhhhhHhhh---hhhHhhhhheeccccccchhhHHHh------------------cccccccHHHHHhhcCCCcc-ccc
Confidence            6666655432   1122222222222222222111110                  11123677888999999998 444


Q ss_pred             h
Q 019924          223 E  223 (334)
Q Consensus       223 ~  223 (334)
                      +
T Consensus       416 d  416 (490)
T KOG1259|consen  416 D  416 (490)
T ss_pred             h
Confidence            3

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=8.8e-13  Score=119.44  Aligned_cols=138  Identities=24%  Similarity=0.335  Sum_probs=100.1

Q ss_pred             CCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCC
Q 019924            6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN   71 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~   71 (334)
                      +.--...|++.|++..++.  +.|..|+.+.+..|            ..|++|||+.|+++ .+|..++.++ |+.|-++
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            3445667888888887665  55556666666555            45677888888887 7777777664 7888888


Q ss_pred             CCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924           72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus        72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                      +|+++ .+|+.++.+..|..||.+.|.+.. +|..++.+.+|+.|.++.|++.. +|...  ..+ .|..||+|+|++..
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~-lp~El--~~L-pLi~lDfScNkis~  225 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLED-LPEEL--CSL-PLIRLDFSCNKISY  225 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhh-CCHHH--hCC-ceeeeecccCceee
Confidence            88887 677778877888888888888876 67777788888888888888743 34433  333 47788888888874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=5.2e-12  Score=108.21  Aligned_cols=195  Identities=23%  Similarity=0.271  Sum_probs=113.6

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccc-------------cCcCccCCCCccEEeCC
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-------------IPRKFVKSCNLTSLNLN   71 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~-------------~p~~~~~l~~L~~L~L~   71 (334)
                      +.++|++||||+|.+....+   +.|..| ++.+.+|++|.|.+|.+...             ..+....-++|+.+..+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~---~~l~~l-l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGI---RGLEEL-LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             cCCceeEeeccccccCccch---HHHHHH-HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            44566677777776654332   111111 22234446666666665411             11123334567777777


Q ss_pred             CCccccC----CCccccCCCCCCEEEccCCcCCcCC----ChhhhcCCCCCEEEeecccCcccCC--CCCCCCCCCCccE
Q 019924           72 GNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFWGPIG--ENTTIVPFPSLRI  141 (334)
Q Consensus        72 ~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~~~l~~L~~  141 (334)
                      +|++...    +...|...+.|+.+.++.|.|....    ...+..+++|+.|||..|-|+....  -.-.+..++.|+.
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            7776532    2334566677777777777764321    2345567777777777777642211  1112355667777


Q ss_pred             EEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccC-
Q 019924          142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-  220 (334)
Q Consensus       142 L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-  220 (334)
                      |++++|.+.......+...+..                                       ..+.|+.|.+.+|.++.. 
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~---------------------------------------~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKE---------------------------------------SAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             ecccccccccccHHHHHHHHhc---------------------------------------cCCCCceeccCcchhHHHH
Confidence            7777777765444333332221                                       257899999999999843 


Q ss_pred             ---CchhhhCcCCCCeeeccCCccC
Q 019924          221 ---IPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       221 ---~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                         +...+...+.|+.|+|++|.+.
T Consensus       287 ~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  287 ALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHHhcchhhHHhcCCccccc
Confidence               3344566899999999999984

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=2e-11  Score=104.65  Aligned_cols=198  Identities=19%  Similarity=0.184  Sum_probs=143.0

Q ss_pred             CCCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC-----------------------CCCCEEeCCCCcCccc
Q 019924            5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNGK   54 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n-----------------------~~L~~L~Ls~N~l~~~   54 (334)
                      .+.+++.++||+|.+.....       ...+.|+..++++-                       +.|++||||.|.+...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            45788999999999874332       44557777777776                       5899999999999865


Q ss_pred             cCcC----ccCCCCccEEeCCCCccccC-------------CCccccCCCCCCEEEccCCcCCcCCC----hhhhcCCCC
Q 019924           55 IPRK----FVKSCNLTSLNLNGNRLEGP-------------LPPSLVNCHHLEVLNVGNNQINDNFP----NWLEILPEL  113 (334)
Q Consensus        55 ~p~~----~~~l~~L~~L~L~~n~l~~~-------------~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L  113 (334)
                      .+..    +..+..|+.|.|.+|.+...             ...-.+.-++|+++...+|++.....    ..|...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            5544    44578999999999998622             11223456789999999999976332    356677899


Q ss_pred             CEEEeecccCcccCC--CCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEE
Q 019924          114 QVLILRSNRFWGPIG--ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL  191 (334)
Q Consensus       114 ~~L~L~~N~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (334)
                      +.+.+..|.|...-.  ...++..++.|+.|||.+|-++..........                               
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka-------------------------------  236 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA-------------------------------  236 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH-------------------------------
Confidence            999999998732111  11145789999999999998875432221111                               


Q ss_pred             EEeccchhhhhhhhheeEEEccCcccccCCchhh-----hCcCCCCeeeccCCccC
Q 019924          192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-----GKLNLLKGLNISHNNLT  242 (334)
Q Consensus       192 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~  242 (334)
                               ...+++|++|++++|.+...-..++     ...|+|+.|.+.+|.++
T Consensus       237 ---------L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  237 ---------LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ---------hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence                     1126789999999999986654444     24689999999999998

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.09  E-value=7.2e-11  Score=77.97  Aligned_cols=58  Identities=29%  Similarity=0.424  Sum_probs=29.5

Q ss_pred             CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc
Q 019924           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ   98 (334)
Q Consensus        41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~   98 (334)
                      |++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3455555555554444455555555555555555554444455555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=8.5e-11  Score=77.63  Aligned_cols=61  Identities=36%  Similarity=0.495  Sum_probs=44.1

Q ss_pred             CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccC
Q 019924           63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF  123 (334)
Q Consensus        63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l  123 (334)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3577777777777755556777777777777777777776666777777777777777764

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.2e-11  Score=107.30  Aligned_cols=149  Identities=23%  Similarity=0.216  Sum_probs=114.8

Q ss_pred             cCCCcccEEEcCCCCCCCCCC-----CCCCCCCeEECCCC--------------CCCCEEeCCCCcCccc-cCcCccCCC
Q 019924            4 LGIATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGK-IPRKFVKSC   63 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~-----~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~-~p~~~~~l~   63 (334)
                      ..|++++.||||+|-+....+     .++++|+.|+++.|              +.|+.|.|+.|.++.. +......++
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            358999999999998887655     78999999999999              7889999999999842 333455688


Q ss_pred             CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCC--hhhhcCCCCCEEEeecccCcccC-CCCC---CCCCCC
Q 019924           64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP--NWLEILPELQVLILRSNRFWGPI-GENT---TIVPFP  137 (334)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~~L~L~~N~l~~~~-~~~~---~~~~l~  137 (334)
                      +|+.|+|.+|............+..|+.|||++|++.. .+  ...+.++.|..|+++.+.+...- |+.-   ....++
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            99999999995332333445567889999999999876 34  45678999999999999985332 2210   124678


Q ss_pred             CccEEEecCCcccccc
Q 019924          138 SLRIIDLSHNEFTGVL  153 (334)
Q Consensus       138 ~L~~L~Ls~N~l~~~~  153 (334)
                      +|++|+++.|++....
T Consensus       302 kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  302 KLEYLNISENNIRDWR  317 (505)
T ss_pred             cceeeecccCcccccc
Confidence            9999999999997553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.05  E-value=4.1e-11  Score=110.69  Aligned_cols=178  Identities=26%  Similarity=0.300  Sum_probs=109.0

Q ss_pred             CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  119 (334)
                      +|+.|++.+|+|. .+...+..+.+|++|++++|.|+..  ..+..++.|+.|++++|.+...  ..+..++.|+.++++
T Consensus        96 ~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence            3377777777777 3333366677777777777777744  2356666677777777777652  344557777777777


Q ss_pred             cccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchh
Q 019924          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK  199 (334)
Q Consensus       120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  199 (334)
                      +|++...-+. . ...+.+++.+++..|.+...........+..+...++   .+..+.+..                  
T Consensus       171 ~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n---~i~~~~~l~------------------  227 (414)
T KOG0531|consen  171 YNRIVDIEND-E-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDN---KISKLEGLN------------------  227 (414)
T ss_pred             cchhhhhhhh-h-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccc---cceeccCcc------------------
Confidence            7777543331 0 1456677777777777765433332332222211111   111111111                  


Q ss_pred             hhhhhh--heeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCCCCc
Q 019924          200 MERILT--IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPL  249 (334)
Q Consensus       200 ~~~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~~~~  249 (334)
                         .+.  .|+.+++++|.+. .++..+..+..+..|++..|+++.+.+.+.
T Consensus       228 ---~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~  275 (414)
T KOG0531|consen  228 ---ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLER  275 (414)
T ss_pred             ---cchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccccc
Confidence               011  3788999999987 555667788889999999999887776543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=4.9e-10  Score=103.08  Aligned_cols=114  Identities=32%  Similarity=0.479  Sum_probs=58.1

Q ss_pred             CcccEEEcCCCCCCCCCC--CCCC-CCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCC
Q 019924            7 ATLYYLDLSNNFLTNIEY--FPPT-NMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN   71 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~--~~~~-~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~   71 (334)
                      +.++.|++.+|.++.+++  .... +|+.|++++|            +.|+.|++++|+++ .+|...+.+++|+.|+++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence            445566666666665555  2232 5566665555            45566666666665 444444455556666666


Q ss_pred             CCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccC
Q 019924           72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF  123 (334)
Q Consensus        72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l  123 (334)
                      +|+++ .+|........|++|.+++|.+.. .+..+..++.+..+.+.+|++
T Consensus       195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         195 GNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             CCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCcee
Confidence            66665 444433334445555555553222 233344444444444444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.76  E-value=3.4e-10  Score=105.69  Aligned_cols=102  Identities=25%  Similarity=0.228  Sum_probs=52.6

Q ss_pred             CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChh-hhcCCCCCEEEee
Q 019924           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILR  119 (334)
Q Consensus        41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~L~  119 (334)
                      |.+.+.+.|.+. .+..++.-++.|+.|||++|+++..  +.+..+++|++|||+.|.+.. +|.. ...+ +|+.|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeeeec
Confidence            444455555555 4445555555666666666666532  245556666666666666554 2321 1122 26666666


Q ss_pred             cccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus       120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                      +|.++...    .+.++.+|+.||+++|-+.+
T Consensus       241 nN~l~tL~----gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  241 NNALTTLR----GIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             ccHHHhhh----hHHhhhhhhccchhHhhhhc
Confidence            66554221    12455566666666665544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=2.6e-08  Score=98.97  Aligned_cols=83  Identities=28%  Similarity=0.315  Sum_probs=65.1

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  118 (334)
                      +.|++|||++|.=.+.+|..++.+-+|++|+++++.++ .+|.++.++.+|.+|++..+.-...+|.....+++|++|.+
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL  649 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence            44578888877666688888888888888888888887 78888888888888888887665556677777888888888


Q ss_pred             eccc
Q 019924          119 RSNR  122 (334)
Q Consensus       119 ~~N~  122 (334)
                      ..-.
T Consensus       650 ~~s~  653 (889)
T KOG4658|consen  650 PRSA  653 (889)
T ss_pred             eccc
Confidence            6654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=1.2e-08  Score=94.28  Aligned_cols=175  Identities=25%  Similarity=0.270  Sum_probs=116.3

Q ss_pred             CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  119 (334)
                      .++.+++..|.+. ..-..+..+++|+.|++.+|+|. .+...+..+++|++|++++|.|+...  .+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence            3466778888887 33455788899999999999998 44434778999999999999998843  46677889999999


Q ss_pred             cccCcccCCCCCCCCCCCCccEEEecCCccccccch--hhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc
Q 019924          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID  197 (334)
Q Consensus       120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (334)
                      +|.++..  ..+  ..++.|+.+++++|.+....+.  .....+..+....+...                        .
T Consensus       149 ~N~i~~~--~~~--~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~------------------------~  200 (414)
T KOG0531|consen  149 GNLISDI--SGL--ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR------------------------E  200 (414)
T ss_pred             cCcchhc--cCC--ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh------------------------c
Confidence            9998533  222  5588999999999998866551  22333333333222100                        0


Q ss_pred             hhhhhhhhheeEEEccCcccccCCchhhhCcC--CCCeeeccCCccCCC-CCCC
Q 019924          198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLN--LLKGLNISHNNLTGL-CGFP  248 (334)
Q Consensus       198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~l-~~~~  248 (334)
                      ......+..+..+++..|.++..-+  +..+.  .|+.+++++|++... .+.+
T Consensus       201 i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~  252 (414)
T KOG0531|consen  201 IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLE  252 (414)
T ss_pred             ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccccccc
Confidence            1111223444555888888873322  22233  388999999999866 4433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.53  E-value=2.4e-09  Score=100.11  Aligned_cols=127  Identities=28%  Similarity=0.297  Sum_probs=93.5

Q ss_pred             CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEE
Q 019924           64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID  143 (334)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  143 (334)
                      .|.+.+.++|.+. ....++.-++.|+.|||++|+++..  +.+..+++|++|||++|.++. +|..- -..+ .|+.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~-~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLS-MVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccc-hhhh-hheeee
Confidence            5788899999998 6777888889999999999999873  478899999999999999863 33321 1333 399999


Q ss_pred             ecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccC-Cc
Q 019924          144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-IP  222 (334)
Q Consensus       144 Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p  222 (334)
                      +++|.++....   +.+                                           +.+|+.||+++|-|.+. --
T Consensus       239 lrnN~l~tL~g---ie~-------------------------------------------LksL~~LDlsyNll~~hseL  272 (1096)
T KOG1859|consen  239 LRNNALTTLRG---IEN-------------------------------------------LKSLYGLDLSYNLLSEHSEL  272 (1096)
T ss_pred             ecccHHHhhhh---HHh-------------------------------------------hhhhhccchhHhhhhcchhh
Confidence            99998875422   111                                           45567788888877642 12


Q ss_pred             hhhhCcCCCCeeeccCCccC
Q 019924          223 EVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       223 ~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      ..+..+..|+.|+|.+|++-
T Consensus       273 ~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  273 EPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hHHHHHHHHHHHhhcCCccc
Confidence            33456677778888888875

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.44  E-value=1.6e-07  Score=56.98  Aligned_cols=41  Identities=27%  Similarity=0.456  Sum_probs=34.7

Q ss_pred             hheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~  246 (334)
                      ++|++|++++|+|+ .+|..++++++|+.|++++|+|+++.+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46899999999999 677789999999999999999987654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.43  E-value=2.8e-07  Score=91.71  Aligned_cols=107  Identities=24%  Similarity=0.259  Sum_probs=87.5

Q ss_pred             CCCCEEeCCCCc--CccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEE
Q 019924           39 LTHKVLDMRMNN--FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL  116 (334)
Q Consensus        39 ~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  116 (334)
                      +.|++|-+..|.  +....+..|..++.|+.|||++|.=-+.+|..++++-+|++|++++..+.. +|..++++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence            345667777775  553445568889999999999987666899999999999999999999986 89999999999999


Q ss_pred             EeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924          117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (334)
Q Consensus       117 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  148 (334)
                      ++..+.....++...  ..+++|++|.+....
T Consensus       624 nl~~~~~l~~~~~i~--~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGIL--LELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchh--hhcccccEEEeeccc
Confidence            999987655555443  669999999987654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.41  E-value=4.6e-08  Score=81.70  Aligned_cols=217  Identities=22%  Similarity=0.244  Sum_probs=136.0

Q ss_pred             CCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC-----------------------CCCCEEeCCCCcCcccc
Q 019924            6 IATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNGKI   55 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n-----------------------~~L~~L~Ls~N~l~~~~   55 (334)
                      +..++.+|||+|.|.....       ..-.+|+..+++.-                       +.|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5678899999999875433       33456666665554                       89999999999998766


Q ss_pred             CcC----ccCCCCccEEeCCCCccccC----CC---------ccccCCCCCCEEEccCCcCCcCCChh-----hhcCCCC
Q 019924           56 PRK----FVKSCNLTSLNLNGNRLEGP----LP---------PSLVNCHHLEVLNVGNNQINDNFPNW-----LEILPEL  113 (334)
Q Consensus        56 p~~----~~~l~~L~~L~L~~n~l~~~----~p---------~~l~~l~~L~~L~Ls~N~l~~~~~~~-----l~~l~~L  113 (334)
                      |..    ++.-+.|++|.+++|.+...    +.         .-..+-+.|++.....|++.. .|..     +..-..|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence            654    55678899999999988622    11         112456789999999999876 3332     2333578


Q ss_pred             CEEEeecccCcccCCCCC------CCCCCCCccEEEecCCccccccchh---hHHhHHhhhhcCCcccccccccCCCCCC
Q 019924          114 QVLILRSNRFWGPIGENT------TIVPFPSLRIIDLSHNEFTGVLLTG---YLDNFKAMMHGNNISVEVDYMTPLNSSN  184 (334)
Q Consensus       114 ~~L~L~~N~l~~~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~~~~~~~~~~~~~~~~~~~  184 (334)
                      +++.+..|.|.   |...      .+..+.+|+.||+.+|-++-.....   ....+..|..++..++            
T Consensus       188 k~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC------------  252 (388)
T COG5238         188 KEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC------------  252 (388)
T ss_pred             eeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch------------
Confidence            99999999873   3211      2245688999999999887432211   1222222222222111            


Q ss_pred             ceeeEEEEEeccch-hhh-----hhhhheeEEEccCcccccCCchh-----h--hCcCCCCeeeccCCccCCCC
Q 019924          185 YYESIILTIKGIDI-KME-----RILTIFMTIDLSSNKFQGGIPEV-----V--GKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       185 ~l~~~~~~~~~~~~-~~~-----~~l~~L~~L~Ls~N~l~~~~p~~-----l--~~l~~L~~L~Ls~N~l~~l~  245 (334)
                             -++.... +.+     ...++|..|...+|.+.+.+...     +  .++|-|..|.+.+|+|..+.
T Consensus       253 -------lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~  319 (388)
T COG5238         253 -------LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA  319 (388)
T ss_pred             -------hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence                   0000000 011     12567778888888776543211     1  35778888899999988543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=1.8e-08  Score=75.64  Aligned_cols=119  Identities=24%  Similarity=0.368  Sum_probs=76.9

Q ss_pred             CEEeCCCCcCccccCcC---ccCCCCccEEeCCCCccccCCCcccc-CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924           42 KVLDMRMNNFNGKIPRK---FVKSCNLTSLNLNGNRLEGPLPPSLV-NCHHLEVLNVGNNQINDNFPNWLEILPELQVLI  117 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  117 (334)
                      ..+||+++++. .+++.   +.....|+..++++|.+. .+|+.|. ..+.++.|++++|++.. +|..+..++.|+.|+
T Consensus        30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLN  106 (177)
T ss_pred             hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcc
Confidence            56777777765 33333   444566777788888887 4454443 34577888888888877 677788888888888


Q ss_pred             eecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus       118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      ++.|.+. ..|..+  ..+.++..||..+|.+.......+.+.+..+..
T Consensus       107 l~~N~l~-~~p~vi--~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~  152 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVI--APLIKLDMLDSPENARAEIDVDLFYSSLPALIK  152 (177)
T ss_pred             cccCccc-cchHHH--HHHHhHHHhcCCCCccccCcHHHhccccHHHHH
Confidence            8888874 334433  457777778877777765443333334444433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.5e-08  Score=85.66  Aligned_cols=160  Identities=18%  Similarity=0.170  Sum_probs=87.4

Q ss_pred             CCCEEeCCCCcCcc-ccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc-CCcCC-ChhhhcCCCCCEE
Q 019924           40 THKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNF-PNWLEILPELQVL  116 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~-~~~l~~l~~L~~L  116 (334)
                      +|++||||+..|+. .+...+..+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++... .-.+..++.|++|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            45667777666652 222334556677777777777766666666667777777776642 22211 1133466677777


Q ss_pred             EeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEecc
Q 019924          117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI  196 (334)
Q Consensus       117 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (334)
                      +++.+.+...........--++|+.|++++..-.-  .   ..++.                                  
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--~---~sh~~----------------------------------  306 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--Q---KSHLS----------------------------------  306 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--h---hhHHH----------------------------------
Confidence            77776654332111111112345556655543110  0   00111                                  


Q ss_pred             chhhhhhhhheeEEEccCcc-cccCCchhhhCcCCCCeeeccCCc
Q 019924          197 DIKMERILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNN  240 (334)
Q Consensus       197 ~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~  240 (334)
                        ...+.+++|.+||||+|. ++......|.+++.|++|.++.+-
T Consensus       307 --tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  307 --TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             --HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence              112236778888888764 555555567777888888887763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=3.3e-08  Score=74.17  Aligned_cols=105  Identities=30%  Similarity=0.366  Sum_probs=81.6

Q ss_pred             ccEEEcCCCCCCCCCC--CCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCcc-CCCCccEEeCCCCccccCCCccccC
Q 019924            9 LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVN   85 (334)
Q Consensus         9 L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~   85 (334)
                      +-.+||+.|.+..+..  ..+....+|        +..+|++|.+. ..|+.|. ..+.++.|++++|+|+ .+|..++.
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el--------~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa   98 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYEL--------TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA   98 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceE--------EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh
Confidence            3456777776654433  333344444        88899999998 5555554 4568999999999999 78888999


Q ss_pred             CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc
Q 019924           86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW  124 (334)
Q Consensus        86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  124 (334)
                      ++.|+.|+++.|.+.. .|..+..+.++-.|+..+|.+.
T Consensus        99 m~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   99 MPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc
Confidence            9999999999999977 6788888999999999988863

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=8.6e-07  Score=53.77  Aligned_cols=17  Identities=53%  Similarity=0.675  Sum_probs=6.3

Q ss_pred             ccCCCCCCEEEccCCcC
Q 019924           83 LVNCHHLEVLNVGNNQI   99 (334)
Q Consensus        83 l~~l~~L~~L~Ls~N~l   99 (334)
                      +.++++|++|++++|++
T Consensus        20 l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             GTTCTTSSEEEETSSCC
T ss_pred             HhCCCCCCEEEecCCCC
Confidence            33333333333333333

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.14  E-value=5.2e-06  Score=66.65  Aligned_cols=86  Identities=27%  Similarity=0.398  Sum_probs=57.0

Q ss_pred             CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEE
Q 019924           63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII  142 (334)
Q Consensus        63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  142 (334)
                      .+...+||++|.+.. + +.|..++.|.+|.+++|+|+.+.|..-..+++|+.|.|.+|.+.. +.+...+..++.|++|
T Consensus        42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCCcccee
Confidence            456677777777752 2 346677777888888888777666555566778888888877632 2222233667778888


Q ss_pred             EecCCcccc
Q 019924          143 DLSHNEFTG  151 (334)
Q Consensus       143 ~Ls~N~l~~  151 (334)
                      .+-+|.++.
T Consensus       119 tll~Npv~~  127 (233)
T KOG1644|consen  119 TLLGNPVEH  127 (233)
T ss_pred             eecCCchhc
Confidence            777777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=4.9e-07  Score=76.63  Aligned_cols=85  Identities=24%  Similarity=0.248  Sum_probs=63.2

Q ss_pred             CCCCEEeCCCCcCcc--ccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcC-CChhhhcCCCCCE
Q 019924           39 LTHKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQV  115 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~  115 (334)
                      ..++.+||.+|.|+.  .+...+..++.|+.|+++.|++...+...=....+|++|-|.+..+.-. ....+..+|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            567889999999983  4555677899999999999998854332113567899999988877432 2344567888999


Q ss_pred             EEeecccC
Q 019924          116 LILRSNRF  123 (334)
Q Consensus       116 L~L~~N~l  123 (334)
                      |.++.|.+
T Consensus       151 lHmS~N~~  158 (418)
T KOG2982|consen  151 LHMSDNSL  158 (418)
T ss_pred             hhhccchh
Confidence            99998854

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.10  E-value=6.4e-06  Score=69.15  Aligned_cols=183  Identities=18%  Similarity=0.252  Sum_probs=110.3

Q ss_pred             CCCEEeCCCCcCccccCc----CccCCCCccEEeCCCCccc---cCC-------CccccCCCCCCEEEccCCcCCcCCCh
Q 019924           40 THKVLDMRMNNFNGKIPR----KFVKSCNLTSLNLNGNRLE---GPL-------PPSLVNCHHLEVLNVGNNQINDNFPN  105 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~n~l~---~~~-------p~~l~~l~~L~~L~Ls~N~l~~~~~~  105 (334)
                      .+..++||+|-|......    .+.+-.+|+..+++.--..   ..+       -+.+.+|++|+..+||+|.+....|.
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            348889999988754333    3444567777777654221   112       23567889999999999999776665


Q ss_pred             h----hhcCCCCCEEEeecccCcccCCCC-C-----------CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCC
Q 019924          106 W----LEILPELQVLILRSNRFWGPIGEN-T-----------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN  169 (334)
Q Consensus       106 ~----l~~l~~L~~L~L~~N~l~~~~~~~-~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~  169 (334)
                      .    +++-+.|.+|.+++|.+ |.+... +           ....-|.|+...+..|++..-...-+...+.+-     
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-----  184 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH-----  184 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-----
Confidence            4    44667899999999987 332211 1           123457899999999987643222111111110     


Q ss_pred             cccccccccCCCCCCceeeEEEEEeccchhhh--------hhhhheeEEEccCcccccC----CchhhhCcCCCCeeecc
Q 019924          170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKME--------RILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNIS  237 (334)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls  237 (334)
                                    ..+.......+++.++..        .-+.+|+.|||.+|-++..    ..+.+..++.|+.|++.
T Consensus       185 --------------~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         185 --------------ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             --------------cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence                          112223333344443311        1256788888888887743    23445566778888888


Q ss_pred             CCccC
Q 019924          238 HNNLT  242 (334)
Q Consensus       238 ~N~l~  242 (334)
                      +|-++
T Consensus       251 DClls  255 (388)
T COG5238         251 DCLLS  255 (388)
T ss_pred             chhhc
Confidence            77665

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.01  E-value=3.7e-05  Score=69.53  Aligned_cols=117  Identities=14%  Similarity=0.181  Sum_probs=58.4

Q ss_pred             CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCC-ccccCCCcccc
Q 019924            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN-RLEGPLPPSLV   84 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~   84 (334)
                      +.+++.|++++|.++.++ .-..+|+.|.+++|.+          ++ .+|..+.  .+|++|++++| .+. .+|.   
T Consensus        51 ~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~n----------Lt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~---  112 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP-VLPNELTEITIENCNN----------LT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE---  112 (426)
T ss_pred             hcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCC----------cc-cCCchhh--hhhhheEccCccccc-cccc---
Confidence            467888888888887765 3334565555544422          22 3343332  46777777776 444 3443   


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcC-CCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEIL-PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                         +|+.|+++.+....     +..+ ++|+.|.+.+++..  ........-.++|++|++++|...
T Consensus       113 ---sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        113 ---SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             ---ccceEEeCCCCCcc-----cccCcchHhheeccccccc--cccccccccCCcccEEEecCCCcc
Confidence               35666666554322     1112 24556655432211  000000001246777777766543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.00  E-value=1e-05  Score=64.96  Aligned_cols=108  Identities=23%  Similarity=0.213  Sum_probs=80.8

Q ss_pred             CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCC-ChhhhcCCCCCEEEe
Q 019924           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF-PNWLEILPELQVLIL  118 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L  118 (334)
                      +...+||++|++...  ..|..++.|.+|.+++|+|+..-|.--.-+++|+.|.+.+|.|.... -+-+..+|.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            347799999999732  46788999999999999999665554455688999999999986521 123567899999999


Q ss_pred             ecccCcccCC-CCCCCCCCCCccEEEecCCcc
Q 019924          119 RSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus       119 ~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      -+|+++..-. ....+..+++|+.||.+.-..
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            9999854321 122457889999999876443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=7.7e-07  Score=75.50  Aligned_cols=139  Identities=22%  Similarity=0.175  Sum_probs=70.5

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC---------------CCCCEEeCCCCcCccccCc-CccC-CCCcc
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPR-KFVK-SCNLT   66 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n---------------~~L~~L~Ls~N~l~~~~p~-~~~~-l~~L~   66 (334)
                      .+|+.|.+.++++...+.   ..-.+|+.|+++++               ++|..|+++.+.+....-. .+.. -++|+
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            444455555555443222   33445555555555               4455555555544321110 0110 13455


Q ss_pred             EEeCCCCccc---cCCCccccCCCCCCEEEccCCc-CCcCCChhhhcCCCCCEEEeecccCcccCCCCC-CCCCCCCccE
Q 019924           67 SLNLNGNRLE---GPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENT-TIVPFPSLRI  141 (334)
Q Consensus        67 ~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~  141 (334)
                      .|+++++.-.   ..+.--...+++|.+|||++|. ++......|.+++.|++|.++.|..  .+|..+ .+...|+|.+
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVY  367 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEE
Confidence            5555554311   0111122456778888887763 3333334555777788888887763  344332 3466777888


Q ss_pred             EEecCC
Q 019924          142 IDLSHN  147 (334)
Q Consensus       142 L~Ls~N  147 (334)
                      ||+.++
T Consensus       368 Ldv~g~  373 (419)
T KOG2120|consen  368 LDVFGC  373 (419)
T ss_pred             EEeccc
Confidence            877654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=2.7e-05  Score=66.31  Aligned_cols=108  Identities=18%  Similarity=0.256  Sum_probs=63.8

Q ss_pred             CEEeCCCCcCccccC-cCcc-CCCCccEEeCCCCcccc--CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924           42 KVLDMRMNNFNGKIP-RKFV-KSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI  117 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p-~~~~-~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  117 (334)
                      +.|-+.+..|..... ..|+ ..+.++.+||.+|+|+.  ++...+.+++.|++|+++.|++...+...-....+|+.|-
T Consensus        48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV  127 (418)
T KOG2982|consen   48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV  127 (418)
T ss_pred             hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence            445555555542111 1122 35668888888888863  2344456778888888888887653322213456788888


Q ss_pred             eecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus       118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      |.+..+.-....++ +..+|.++.|++|.|.+.
T Consensus       128 LNgT~L~w~~~~s~-l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  128 LNGTGLSWTQSTSS-LDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             EcCCCCChhhhhhh-hhcchhhhhhhhccchhh
Confidence            87776643222222 356777788888887544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=1.9e-05  Score=76.99  Aligned_cols=131  Identities=21%  Similarity=0.227  Sum_probs=68.0

Q ss_pred             CcccEEEcCCCCCCCCCC-----CCCCCCCeEECCCCCCCCEEeCCCCcCcc-ccCcCccCCCCccEEeCCCCccccCCC
Q 019924            7 ATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLP   80 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~-----~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p   80 (334)
                      .+|+.||+++...-....     ..+|+|+.|           .+++-.+.. .......++++|..||+|+++++..  
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL-----------~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--  188 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSL-----------VISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--  188 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceE-----------EecCceecchhHHHHhhccCccceeecCCCCccCc--
Confidence            356777777654432222     345555544           444433321 1122344566666777777666633  


Q ss_pred             ccccCCCCCCEEEccCCcCCc-CCChhhhcCCCCCEEEeecccCcccC------CCCCCCCCCCCccEEEecCCccccc
Q 019924           81 PSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPI------GENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        81 ~~l~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~------~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      .+++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|..+.....      -+..  ..+|+|+.||.|++.+.+.
T Consensus       189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~--~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG--MVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc--ccCccccEEecCCcchhHH
Confidence            456666666666666544433 11123445667777777665542211      0111  2366777777776666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.69  E-value=1.8e-05  Score=77.15  Aligned_cols=129  Identities=17%  Similarity=0.215  Sum_probs=80.0

Q ss_pred             CCCCEEeCCCCcCcc-ccCcCcc-CCCCccEEeCCCCcccc-CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCE
Q 019924           39 LTHKVLDMRMNNFNG-KIPRKFV-KSCNLTSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV  115 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~-~~p~~~~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  115 (334)
                      .+|++||+++...-. .-|..++ -+++|+.|.+++-.+.. ..-....++++|..||+|+..++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            678888888764431 2222232 47888888888876642 2233456678888889988888764  67788888888


Q ss_pred             EEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc--c---hhhHHhHHhhhhcCCc
Q 019924          116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL--L---TGYLDNFKAMMHGNNI  170 (334)
Q Consensus       116 L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~---~~~~~~l~~L~~~~~~  170 (334)
                      |.+.+=.+.. ...-..+.++++|+.||+|........  .   .++...|+.|+.++..
T Consensus       200 L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  200 LSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             HhccCCCCCc-hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence            8887766532 111123467888888888876654322  1   1222335555555553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.67  E-value=3.2e-05  Score=64.66  Aligned_cols=94  Identities=18%  Similarity=0.222  Sum_probs=66.4

Q ss_pred             cCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCC--cCCcCCChhhhcCCCCCEEEeecccCcccCCCCCC
Q 019924           55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN--QINDNFPNWLEILPELQVLILRSNRFWGPIGENTT  132 (334)
Q Consensus        55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  132 (334)
                      +......+..|+.|++.+..++..  ..+..+++|+.|.++.|  .+.+.++.....+++|++|++++|++.- +...-.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccch
Confidence            445555566788888888877733  34677889999999999  5555555555567999999999999852 222123


Q ss_pred             CCCCCCccEEEecCCcccc
Q 019924          133 IVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus       133 ~~~l~~L~~L~Ls~N~l~~  151 (334)
                      +..+.+|..||+.+|..+.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcchhhhhcccCCccc
Confidence            3567788889998887765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.49  E-value=0.00052  Score=62.23  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=16.4

Q ss_pred             hheeEEEccCcccccCCchhhhCcCCCCeeeccCC
Q 019924          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN  239 (334)
Q Consensus       205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  239 (334)
                      ++|+.|++++|... ..|+.+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45666666665544 2333222  35566666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.31  E-value=0.00015  Score=60.76  Aligned_cols=100  Identities=26%  Similarity=0.296  Sum_probs=61.2

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCC--ccccCCCccccCCCCCCEEEccCCcCCcCCChh---hhcCCCCCEE
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN--RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW---LEILPELQVL  116 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~---l~~l~~L~~L  116 (334)
                      +.|++.+..++..  ..|..+++|++|.++.|  ++.+.++.-...+++|++|++++|++..  ++.   +..+.+|..|
T Consensus        46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSL  121 (260)
T ss_pred             hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhh
Confidence            4444555444422  34566778888888888  5655555555666888888888888764  222   3456677788


Q ss_pred             EeecccCcccCC-CCCCCCCCCCccEEEec
Q 019924          117 ILRSNRFWGPIG-ENTTIVPFPSLRIIDLS  145 (334)
Q Consensus       117 ~L~~N~l~~~~~-~~~~~~~l~~L~~L~Ls  145 (334)
                      ++.+|..+..-- ....+.-+++|++||-.
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhcccccc
Confidence            888877654211 01123456777777643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.25  E-value=0.0013  Score=49.95  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=52.1

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  118 (334)
                      .+|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++|+.+++
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            3446666663 455455666777777888888765 5545556677777788888865 444444556667788888887


Q ss_pred             ecccCcccCCCCCCCCCCCCccEEEecC
Q 019924          119 RSNRFWGPIGENTTIVPFPSLRIIDLSH  146 (334)
Q Consensus       119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~  146 (334)
                      ..+ +.......  +.+. +|+.+.+..
T Consensus        89 ~~~-~~~i~~~~--f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   89 PSN-ITEIGSSS--FSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT--BEEHTTT--TTT--T--EEE-TT
T ss_pred             Ccc-ccEEchhh--hcCC-CceEEEECC
Confidence            655 33222222  3555 777777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.01  E-value=0.0014  Score=49.77  Aligned_cols=103  Identities=18%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      ++++|+.+.+.. .+..+....+.+...|        +.+.+..+ +.......|..+.+++.+.+.. .+.......|.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l--------~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSL--------KSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT---------SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccc--------cccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            456788888875 4665555555555444        88888875 6656667888888999999976 44435556788


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      .+++|+.+++..+ +.......|..+ +|+.+.+..
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            8999999999776 655566677777 899998875

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=1.8e-05  Score=66.69  Aligned_cols=84  Identities=30%  Similarity=0.297  Sum_probs=35.3

Q ss_pred             CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEE
Q 019924           64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID  143 (334)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  143 (334)
                      +.+.|++.+|.++.+  ....+++.|+.|.|+-|+|+..  ..+..|+.|++|+|..|.|.. +.+..-+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence            344444444444422  1223444455555555554442  123444455555555554421 11111123445555555


Q ss_pred             ecCCccccc
Q 019924          144 LSHNEFTGV  152 (334)
Q Consensus       144 Ls~N~l~~~  152 (334)
                      |..|.-.+.
T Consensus        95 L~ENPCc~~  103 (388)
T KOG2123|consen   95 LDENPCCGE  103 (388)
T ss_pred             hccCCcccc
Confidence            555544433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.00017  Score=61.04  Aligned_cols=63  Identities=21%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924           86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus        86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      +.+.+.|++-++.+.++  .....|+.|+.|.|+-|+|+..-+    +..+++|++|+|..|.|.+...
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldE   80 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDE   80 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHH
Confidence            45678889999988773  456789999999999999864433    2678999999999999876533

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.46  E-value=0.0014  Score=33.07  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=16.8

Q ss_pred             heeEEEccCcccccCCchhhhCc
Q 019924          206 IFMTIDLSSNKFQGGIPEVVGKL  228 (334)
Q Consensus       206 ~L~~L~Ls~N~l~~~~p~~l~~l  228 (334)
                      +|++|||++|+++ .+|..|+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4788999999998 777766653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.29  E-value=1.5e-05  Score=74.29  Aligned_cols=38  Identities=32%  Similarity=0.349  Sum_probs=29.1

Q ss_pred             hheeEEEccCcccccCC----chhhhCcCCCCeeeccCCccC
Q 019924          205 TIFMTIDLSSNKFQGGI----PEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       205 ~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      ..++.++++.|.|+..-    .+.+..++.++.+.++.|++.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            46688899999888543    444566778889999999887

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.28  E-value=0.0018  Score=32.66  Aligned_cols=19  Identities=37%  Similarity=0.592  Sum_probs=9.4

Q ss_pred             CCEEeCCCCcCccccCcCcc
Q 019924           41 HKVLDMRMNNFNGKIPRKFV   60 (334)
Q Consensus        41 L~~L~Ls~N~l~~~~p~~~~   60 (334)
                      |++||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            355555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.15  E-value=0.012  Score=27.48  Aligned_cols=14  Identities=64%  Similarity=0.655  Sum_probs=5.9

Q ss_pred             cccEEEcCCCCCCC
Q 019924            8 TLYYLDLSNNFLTN   21 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~   21 (334)
                      +|+.|++++|+++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            45555555555543

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.59  E-value=0.00053  Score=56.61  Aligned_cols=80  Identities=19%  Similarity=0.216  Sum_probs=45.5

Q ss_pred             CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      .+.||++.|++. .+-..|+.++.+..|+++.|++. ..|..+..+..+..+++..|..+. .|..++..++++++++..
T Consensus        44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhcc
Confidence            355566666554 33445555555666666666665 455555555555556655555554 455555666666666555


Q ss_pred             ccC
Q 019924          121 NRF  123 (334)
Q Consensus       121 N~l  123 (334)
                      |.+
T Consensus       121 ~~~  123 (326)
T KOG0473|consen  121 TEF  123 (326)
T ss_pred             Ccc
Confidence            554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.99  E-value=0.097  Score=27.31  Aligned_cols=14  Identities=36%  Similarity=0.634  Sum_probs=6.7

Q ss_pred             CCCEEEccCCcCCc
Q 019924           88 HLEVLNVGNNQIND  101 (334)
Q Consensus        88 ~L~~L~Ls~N~l~~  101 (334)
                      +|++|++++|++..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00369        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444454444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.99  E-value=0.097  Score=27.31  Aligned_cols=14  Identities=36%  Similarity=0.634  Sum_probs=6.7

Q ss_pred             CCCEEEccCCcCCc
Q 019924           88 HLEVLNVGNNQIND  101 (334)
Q Consensus        88 ~L~~L~Ls~N~l~~  101 (334)
                      +|++|++++|++..
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00370        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444454444444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.93  E-value=0.0013  Score=54.29  Aligned_cols=74  Identities=16%  Similarity=0.131  Sum_probs=60.9

Q ss_pred             CCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEE
Q 019924           26 PPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLN   93 (334)
Q Consensus        26 ~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~   93 (334)
                      .+...+.||++.|            ..+..||++.|++. ..|..+..+..+..+++..|..+ ..|.++...+.+++++
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            3444555555555            34578999999998 88999999999999999999988 8899999999999999


Q ss_pred             ccCCcCCc
Q 019924           94 VGNNQIND  101 (334)
Q Consensus        94 Ls~N~l~~  101 (334)
                      +..|.+..
T Consensus       118 ~k~~~~~~  125 (326)
T KOG0473|consen  118 QKKTEFFR  125 (326)
T ss_pred             hccCcchH
Confidence            99998643

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.93  E-value=0.00072  Score=63.26  Aligned_cols=37  Identities=16%  Similarity=0.094  Sum_probs=19.6

Q ss_pred             hhheeEEEccCcccccCCc----hhhhCcCCCCeeeccCCc
Q 019924          204 LTIFMTIDLSSNKFQGGIP----EVVGKLNLLKGLNISHNN  240 (334)
Q Consensus       204 l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~  240 (334)
                      ++.++++.++.|.+.....    ..+.....+..+-+.++.
T Consensus       289 ~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~  329 (478)
T KOG4308|consen  289 CRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG  329 (478)
T ss_pred             hHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence            4567778888887764321    222333444455555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.50  E-value=0.11  Score=27.15  Aligned_cols=16  Identities=38%  Similarity=0.497  Sum_probs=10.1

Q ss_pred             CCccEEeCCCCccccC
Q 019924           63 CNLTSLNLNGNRLEGP   78 (334)
Q Consensus        63 ~~L~~L~L~~n~l~~~   78 (334)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566677777766633

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.50  E-value=0.11  Score=27.15  Aligned_cols=16  Identities=38%  Similarity=0.497  Sum_probs=10.1

Q ss_pred             CCccEEeCCCCccccC
Q 019924           63 CNLTSLNLNGNRLEGP   78 (334)
Q Consensus        63 ~~L~~L~L~~n~l~~~   78 (334)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566677777766633

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.97  E-value=0.03  Score=28.67  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=12.2

Q ss_pred             hheeEEEccCcccccCCchhh
Q 019924          205 TIFMTIDLSSNKFQGGIPEVV  225 (334)
Q Consensus       205 ~~L~~L~Ls~N~l~~~~p~~l  225 (334)
                      ++|++|+|++|+|++..+..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            467777888877775544443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.34  E-value=0.057  Score=43.93  Aligned_cols=81  Identities=16%  Similarity=0.131  Sum_probs=34.7

Q ss_pred             CccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCc-CCChhhh-cCCCCCEEEeeccc-CcccCCCCCCCCCCCCcc
Q 019924           64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLE-ILPELQVLILRSNR-FWGPIGENTTIVPFPSLR  140 (334)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~l~-~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~  140 (334)
                      .++.+|-++..|..+--+.+.++++++.|.+.++.--+ ..-+.++ -.++|+.|++++|. |+..--.  .+..+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA--CLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH--HHHHhhhhH
Confidence            35555555555544333344445555555555443211 0000111 23556666666553 3221111  123455555


Q ss_pred             EEEecC
Q 019924          141 IIDLSH  146 (334)
Q Consensus       141 ~L~Ls~  146 (334)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            555443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.29  E-value=0.43  Score=24.99  Aligned_cols=18  Identities=22%  Similarity=0.388  Sum_probs=10.6

Q ss_pred             CCCCeeeccCCccCCCCC
Q 019924          229 NLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       229 ~~L~~L~Ls~N~l~~l~~  246 (334)
                      ++|+.|++++|+|+.+.+
T Consensus         2 ~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        2 TNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CccCEEECCCCccceecC
Confidence            456666666666655444

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=87.79  E-value=4.1  Score=37.77  Aligned_cols=41  Identities=20%  Similarity=0.227  Sum_probs=22.9

Q ss_pred             eeEEEccCcccccCCch---hhhCcCCCCeeeccCCccCCCCCC
Q 019924          207 FMTIDLSSNKFQGGIPE---VVGKLNLLKGLNISHNNLTGLCGF  247 (334)
Q Consensus       207 L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~l~~~  247 (334)
                      +..+.++.|.+....-.   .+..-+.+..|++++|....-.+.
T Consensus       415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap  458 (553)
T KOG4242|consen  415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAP  458 (553)
T ss_pred             ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCC
Confidence            55666777766532221   223345677777777776544433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=85.98  E-value=0.16  Score=47.77  Aligned_cols=91  Identities=26%  Similarity=0.187  Sum_probs=46.2

Q ss_pred             CccCCCCccEEeCCCC-ccccCC----CccccCCCCCCEEEccCCc-CCcCCChhhh-cCCCCCEEEeeccc-CcccCCC
Q 019924           58 KFVKSCNLTSLNLNGN-RLEGPL----PPSLVNCHHLEVLNVGNNQ-INDNFPNWLE-ILPELQVLILRSNR-FWGPIGE  129 (334)
Q Consensus        58 ~~~~l~~L~~L~L~~n-~l~~~~----p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~-~l~~L~~L~L~~N~-l~~~~~~  129 (334)
                      ....+++|+.|+++++ ......    ......+.+|+.|+++... +++..-..+. .+++|++|.+.++. ++...-.
T Consensus       209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~  288 (482)
T KOG1947|consen  209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV  288 (482)
T ss_pred             HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence            3445667777777652 111011    1233445667777777766 4443333333 36677777765554 3222111


Q ss_pred             CCCCCCCCCccEEEecCCcc
Q 019924          130 NTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus       130 ~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      .+ ...++.|+.|+++.+..
T Consensus       289 ~i-~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  289 SI-AERCPSLRELDLSGCHG  307 (482)
T ss_pred             HH-HHhcCcccEEeeecCcc
Confidence            11 13456677777776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=85.72  E-value=0.36  Score=45.37  Aligned_cols=85  Identities=22%  Similarity=0.174  Sum_probs=52.2

Q ss_pred             CCCCEEeCCCC--cCcc---ccCcCccCCCCccEEeCCCCc-cccCCCcccc-CCCCCCEEEccCCc-CCcCCC-hhhhc
Q 019924           39 LTHKVLDMRMN--NFNG---KIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLV-NCHHLEVLNVGNNQ-INDNFP-NWLEI  109 (334)
Q Consensus        39 ~~L~~L~Ls~N--~l~~---~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~~~~-~~l~~  109 (334)
                      +.|+.|+++++  .+..   ........+.+|+.|+++++. ++...-..+. .+++|++|.+.++. +++..- .....
T Consensus       214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~  293 (482)
T KOG1947|consen  214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER  293 (482)
T ss_pred             chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence            55677777652  1110   111234456789999999887 5533222232 37899999977776 444322 23346


Q ss_pred             CCCCCEEEeecccC
Q 019924          110 LPELQVLILRSNRF  123 (334)
Q Consensus       110 l~~L~~L~L~~N~l  123 (334)
                      ++.|++|+++.+..
T Consensus       294 ~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  294 CPSLRELDLSGCHG  307 (482)
T ss_pred             cCcccEEeeecCcc
Confidence            78899999998765

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.50  E-value=0.57  Score=24.48  Aligned_cols=17  Identities=53%  Similarity=0.591  Sum_probs=11.3

Q ss_pred             CCCeeeccCCccCCCCC
Q 019924          230 LLKGLNISHNNLTGLCG  246 (334)
Q Consensus       230 ~L~~L~Ls~N~l~~l~~  246 (334)
                      +|+.|++++|+++.++.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            56677777777766654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=84.98  E-value=0.33  Score=43.93  Aligned_cols=109  Identities=21%  Similarity=0.168  Sum_probs=62.4

Q ss_pred             CCCCEEeCCCCc-CccccCcCc-cCCCCccEEeCCCCccccC--CCccccCCCCCCEEEccCCcCC-cCC----Chhhhc
Q 019924           39 LTHKVLDMRMNN-FNGKIPRKF-VKSCNLTSLNLNGNRLEGP--LPPSLVNCHHLEVLNVGNNQIN-DNF----PNWLEI  109 (334)
Q Consensus        39 ~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~-~~~----~~~l~~  109 (334)
                      .+|++|-++.++ ++..--..+ .+..+|+.+++..+.....  +...-.+++.|+.|.++++... +..    ...-..
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            455555555554 221111111 2456788888888765411  2223356788999999987652 210    111235


Q ss_pred             CCCCCEEEeecccCccc-CCCCCCCCCCCCccEEEecCCcc
Q 019924          110 LPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus       110 l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      +..|..+.|++++.... ..+  .+...++|+.+++-.++-
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le--~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLE--HLSICRNLERIELIDCQD  438 (483)
T ss_pred             ccccceeeecCCCCchHHHHH--HHhhCcccceeeeechhh
Confidence            66788899988875321 112  235677888888877753

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=82.43  E-value=1.1  Score=23.78  Aligned_cols=12  Identities=25%  Similarity=0.418  Sum_probs=5.7

Q ss_pred             CCEEeCCCCcCc
Q 019924           41 HKVLDMRMNNFN   52 (334)
Q Consensus        41 L~~L~Ls~N~l~   52 (334)
                      |++|||++|.++
T Consensus         4 L~~LdL~~N~i~   15 (28)
T smart00368        4 LRELDLSNNKLG   15 (28)
T ss_pred             cCEEECCCCCCC
Confidence            344455555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.78  E-value=0.56  Score=38.33  Aligned_cols=89  Identities=19%  Similarity=0.140  Sum_probs=57.0

Q ss_pred             CCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc-cccccchhh
Q 019924           79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLTGY  157 (334)
Q Consensus        79 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~  157 (334)
                      .|.....-..++.+|.++..|....-+.+..++.++.|.+.+++--+...-..--...++|+.|+++.|. |++. ...+
T Consensus        93 lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~  171 (221)
T KOG3864|consen   93 LPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLAC  171 (221)
T ss_pred             CCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHH
Confidence            4443344457899999999998877777888899999999888632211100001246899999999875 5533 2234


Q ss_pred             HHhHHhhhhcC
Q 019924          158 LDNFKAMMHGN  168 (334)
Q Consensus       158 ~~~l~~L~~~~  168 (334)
                      +..+++|..+.
T Consensus       172 L~~lknLr~L~  182 (221)
T KOG3864|consen  172 LLKLKNLRRLH  182 (221)
T ss_pred             HHHhhhhHHHH
Confidence            55555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	334
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-07
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-07
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 30/230 (13%)
Query: 42  KVLDMRM--NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
           K+ D+++  N   G+IP++ +    L +L L+ N L G +P  L NC +L  +++ NN++
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 100 NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL- 158
               P W+  L  L +L L +N F G I     +    SL  +DL+ N F G +      
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 159 --------------------DNFKAMMHGNN-----ISVEVDYMTPLNSSNYYESIILTI 193
                               D  K   HG         +  + +  L++ N         
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 194 KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
            G            M +D+S N   G IP+ +G +  L  LN+ HN+++G
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 30/230 (13%)
Query: 42  KVLDMRM--NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
           K+ D+++  N   G+IP++ +    L +L L+ N L G +P  L NC +L  +++ NN++
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 100 NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL- 158
               P W+  L  L +L L +N F G I     +    SL  +DL+ N F G +      
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 159 --------------------DNFKAMMHGNN-----ISVEVDYMTPLNSSNYYESIILTI 193
                               D  K   HG         +  + +  L++ N         
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 194 KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
            G            M +D+S N   G IP+ +G +  L  LN+ HN+++G
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 7/200 (3%)
Query: 48  MNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL 107
           +NN  G IP    K   L  L +    + G +P  L     L  L+   N ++   P  +
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 108 EILPELQVLILRSNRFWGPIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165
             LP L  +    NR  G I ++       F S+ I   S N  TG +   + +   A +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI---SRNRLTGKIPPTFANLNLAFV 202
Query: 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI-LTIFMT-IDLSSNKFQGGIPE 223
             +   +E D      S    + I L    +   + ++ L+  +  +DL +N+  G +P+
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 224 VVGKLNLLKGLNISHNNLTG 243
            + +L  L  LN+S NNL G
Sbjct: 263 GLTQLKFLHSLNVSFNNLCG 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  179 bits (456), Expect = 6e-51
 Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 16/239 (6%)

Query: 9   LYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L  L LS N+L+  I    P+++  L   S L    L + +N   G+IP++ +    L +
Sbjct: 420 LVSLHLSFNYLSGTI----PSSLGSL---SKLR--DLKLWLNMLEGEIPQELMYVKTLET 470

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L L+ N L G +P  L NC +L  +++ NN++    P W+  L  L +L L +N F G I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG---NNISVEVDYMTPLNSSN 184
                +    SL  +DL+ N F G +          +          V +          
Sbjct: 531 PA--ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC- 587

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
           +    +L  +GI  +    L+     +++S  + G           +  L++S+N L+G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  124 bits (314), Expect = 9e-32
 Identities = 51/237 (21%), Positives = 77/237 (32%), Gaps = 36/237 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           L  L L  N LT     P    N T L          + +  N   G+IP+   +  NL 
Sbjct: 468 LETLILDFNDLTGE--IPSGLSNCTNL--------NWISLSNNRLTGEIPKWIGRLENLA 517

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L L+ N   G +P  L +C  L  L++  N  N   P  +          + +N   G 
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGK 573

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
                             +  EF G+     L+        N             +S  Y
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSE-QLNRLSTRNPCNI------------TSRVY 620

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                                M +D+S N   G IP+ +G +  L  LN+ HN+++G
Sbjct: 621 GGHTSPTFDN-------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  123 bits (310), Expect = 3e-31
 Identities = 67/245 (27%), Positives = 102/245 (41%), Gaps = 47/245 (19%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC-NLTS 67
           L  L++S+N        PP  +  L        + L +  N F G+IP     +C  LT 
Sbjct: 249 LKLLNISSNQFVGP--IPPLPLKSL--------QYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGP 126
           L+L+GN   G +PP   +C  LE L + +N  +   P + L  +  L+VL L  N F G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 127 IGE---NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-----MHGNNISVEVDYMT 178
           + E   N +     SL  +DLS N F+G +L     N K       +  N  + ++    
Sbjct: 359 LPESLTNLS----ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI---- 410

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           P   SN                    +  +++ LS N   G IP  +G L+ L+ L +  
Sbjct: 411 PPTLSN-------------------CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 239 NNLTG 243
           N L G
Sbjct: 452 NMLEG 456

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  117 bits (296), Expect = 2e-29
 Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 40/240 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L +L++S+N L           +  L        +VLD+  N+ +G     +V S     
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSL--------EVLDLSANSISGANVVGWVLSDGCGE 179

Query: 68  ---LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
              L ++GN++ G +   +  C +LE L+V +N  +   P +L     LQ L +  N+  
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSS 183
           G       I     L+++++S N+F G +    L + + + +  N  + E+    P   S
Sbjct: 237 GDFSRA--ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI----PDFLS 290

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                                     +DLS N F G +P   G  +LL+ L +S NN +G
Sbjct: 291 G------------------ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  117 bits (296), Expect = 2e-29
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 46/243 (18%)

Query: 9   LYYLDLSNNFLTN---IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           L  LDLS N ++    + +       +L        K L +  N  +G +     +  NL
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGEL--------KHLAISGNKISGDVD--VSRCVNL 202

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             L+++ N     +P  L +C  L+ L++  N+++ +F   +    EL++L + SN+F G
Sbjct: 203 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVL---LTGYLDNFKAM-MHGNNISVEVDYMTPLN 181
           PI       P  SL+ + L+ N+FTG +   L+G  D    + + GN+    V    P  
Sbjct: 262 PIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV----PPF 313

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNISHNN 240
             +                    ++  ++ LSSN F G +P + + K+  LK L++S N 
Sbjct: 314 FGS-------------------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 241 LTG 243
            +G
Sbjct: 355 FSG 357

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (280), Expect = 3e-27
 Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 35/237 (14%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
           +DLS+  L        +++  L   + L    L +  ++ NG +   F  S +LTSL+L+
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSL---TGLES--LFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 72  GNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPI- 127
            N L GP+    SL +C  L+ LNV +N ++     +    L  L+VL L +N   G   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNYY 186
                      L+ + +S N+ +G +      N + + +  NN S  + ++   ++    
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSA---- 224

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
               L                  +D+S NK  G     +     LK LNIS N   G
Sbjct: 225 ----LQ----------------HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (261), Expect = 8e-25
 Identities = 62/280 (22%), Positives = 93/280 (33%), Gaps = 69/280 (24%)

Query: 9   LYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L  L LSNN  + NI    P  +       +L    LD+  N FNG IP     +    S
Sbjct: 516 LAILKLSNNSFSGNI----PAELGDC---RSLI--WLDLNTNLFNGTIP----AAMFKQS 562

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNN--QINDNFPNWLEILPELQVLILRSNRFWG 125
             +  N + G     + N    +  +   N  +        L  L       + S  + G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN---- 181
                 T     S+  +D+S+N  +G                  I  E+  M  L     
Sbjct: 623 HTSP--TFDNNGSMMFLDMSYNMLSG-----------------YIPKEIGSMPYLFILNL 663

Query: 182 SSNYYE-SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
             N    SI   +          L     +DLSSNK  G IP+ +  L +L  +++S+NN
Sbjct: 664 GHNDISGSIPDEVGD--------LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715

Query: 241 LTG---------------------LCGFPLLESCNIDEAP 259
           L+G                     LCG+PL      +   
Sbjct: 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (258), Expect = 2e-24
 Identities = 57/252 (22%), Positives = 96/252 (38%), Gaps = 39/252 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK--FVKSCNLT 66
           L  L LSN+ +                 ++LT   LD+  N+ +G +           L 
Sbjct: 79  LESLFLSNSHINGS--VSG-----FKCSASLTS--LDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 67  SLNLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEI---LPELQVLILRSNR 122
            LN++ N L+ P      +  + LEVL++  N I+        +     EL+ L +  N+
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-LTGYLDNFKAMMHGNN-----ISVEVDY 176
             G +     +    +L  +D+S N F+  +   G     + +    N      S  +  
Sbjct: 190 ISGDVD----VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 177 MTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP-EVVGKLNLL 231
            T L     SSN +   I  +          L     + L+ NKF G IP  + G  + L
Sbjct: 246 CTELKLLNISSNQFVGPIPPL---------PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 232 KGLNISHNNLTG 243
            GL++S N+  G
Sbjct: 297 TGLDLSGNHFYG 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 6e-19
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 23/185 (12%)

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
           V S +L+S  LN       +  SL++   LE L + N+ IN +   +      L  L L 
Sbjct: 52  VTSIDLSSKPLNVGF--SAVSSSLLSLTGLESLFLSNSHINGSVSGFKC-SASLTSLDLS 108

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
            N   GP+   T++     L+ +++S N               ++               
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV------------- 155

Query: 180 LN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           L+ S+N      +    +   +         + +S NK  G +   V +   L+ L++S 
Sbjct: 156 LDLSANSISGANV----VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209

Query: 239 NNLTG 243
           NN + 
Sbjct: 210 NNFST 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (334), Expect = 2e-34
 Identities = 52/241 (21%), Positives = 88/241 (36%), Gaps = 25/241 (10%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L YL LSN+F  ++          L   S L   +L++  N  +      F    +L  L
Sbjct: 355 LKYLSLSNSFT-SLRTLTNETFVSLAH-SPL--HILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 69  NLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           +L  N +   L         ++  + +  N+      N   ++P LQ L+LR        
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSS 183
              +   P  +L I+DLS+N     +    L+  + +    +  NN++            
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLA------------ 517

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                      G  I   + L+    ++L SN F     EV   L  LK +++  NNL  
Sbjct: 518 ---RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 244 L 244
           L
Sbjct: 575 L 575

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (275), Expect = 1e-26
 Identities = 48/246 (19%), Positives = 90/246 (36%), Gaps = 19/246 (7%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  LD+  N ++ +E      +  L        KVL+++ N  +    + F    NLT L
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPML--------KVLNLQHNELSQLSDKTFAFCTNLTEL 102

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           +L  N ++       V   +L  L++ +N ++         L  LQ L+L +N+      
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSSN 184
           E   I    SL+ ++LS N+       G       +    ++   +   +     L  +N
Sbjct: 163 EELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 185 YY-ESIILT---IKGIDIKMERILTIFM--TIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
               ++ L+   +          L       +DLS N       +    L  L+   + +
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 239 NNLTGL 244
           NN+  L
Sbjct: 282 NNIQHL 287

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (260), Expect = 1e-24
 Identities = 41/245 (16%), Positives = 84/245 (34%), Gaps = 32/245 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV--KSCNLT 66
           L+ L L+N  L          +     ++++ +  L +  +  +      F+  K  NLT
Sbjct: 197 LFGLFLNNVQLGPS---LTEKLCLELANTSIRN--LSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L+L+ N L      S      LE   +  N I   F + L  L  ++ L L+ +     
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 127 IGENT-------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
           I   +       +      L  +++  N+  G + +        + +             
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKY------------- 357

Query: 180 LN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           L+ S+++     LT +         L     ++L+ NK      +    L  L+ L++  
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLH---ILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 239 NNLTG 243
           N +  
Sbjct: 415 NEIGQ 419

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 22/243 (9%)

Query: 11  YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70
             D S+  LT +   P       +  +N+T   L++  N         F +   LTSL++
Sbjct: 8   VADCSHLKLTQV---PD------DLPTNITV--LNLTHNQLRRLPAANFTRYSQLTSLDV 56

Query: 71  NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGEN 130
             N +    P        L+VLN+ +N+++            L  L L SN        N
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK--N 114

Query: 131 TTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAM-MHGNNISVEVDYMTPLNSSNYYE 187
              V   +L  +DLSHN  +   L     L+N + + +  N I         + +++  +
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 188 SIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG---KLNLLKGLNISHNNL 241
            + L+   IK         +     + L++ +    + E +        ++ L++S++ L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 242 TGL 244
           +  
Sbjct: 235 STT 237

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.8 bits (239), Expect = 5e-22
 Identities = 49/260 (18%), Positives = 76/260 (29%), Gaps = 46/260 (17%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
           L    L  LDLS N L  +       + QL        +   +  NN             
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQL--------EYFFLEYNNIQHLFSHSLHGLF 296

Query: 64  NLTSLNLNGN---------RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           N+  LNL  +          L      S      LE LN+ +N I     N    L  L+
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 115 VLILRSNRFWGPIGENTTIV--PFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGN 168
            L L ++        N T V      L I++L+ N+ +  + +        +    +  N
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLN 415

Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
            I  E+         N                   +     I LS NK+          +
Sbjct: 416 EIGQELTGQEWRGLEN-------------------IFE---IYLSYNKYLQLTRNSFALV 453

Query: 229 NLLKGLNISHNNLTGLCGFP 248
             L+ L +    L  +   P
Sbjct: 454 PSLQRLMLRRVALKNVDSSP 473

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 43/248 (17%), Positives = 83/248 (33%), Gaps = 31/248 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L L +N +  I+  P      L          LD+  N  +       V+  NL  L
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNL--------ITLDLSHNGLSSTKLGTQVQLENLQEL 150

Query: 69  NLNGNRLEGPLPPSLVNCHH--LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L+ N+++      L    +  L+ L + +NQI +  P     +  L  L L + +    
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 127 IGENTTI-VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-SSN 184
           + E   + +   S+R + LS+++ +        +     +   N+++       L+ S N
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTS-----NTTFLGLKWTNLTM-------LDLSYN 258

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
                   +  +       L       L  N  Q      +  L  ++ LN+  +     
Sbjct: 259 N-------LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 245 CGFPLLES 252
                L  
Sbjct: 312 ISLASLPK 319

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.7 bits (223), Expect = 5e-20
 Identities = 48/253 (18%), Positives = 80/253 (31%), Gaps = 43/253 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG--KIPRKFVKSCNLT 66
           ++ + LS N    +       +  L        + L +R          P  F    NLT
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSL--------QRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND--------NFPNWLEILPELQVLIL 118
            L+L+ N +       L     LE+L++ +N +              +L+ L  L +L L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178
            SN F     E         L+IIDL  N     L     +N  ++              
Sbjct: 544 ESNGFDEIPVE--VFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKS------------ 588

Query: 179 PLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
            LN   N   S+   +                +D+  N F      +   +N +   + +
Sbjct: 589 -LNLQKNLITSVEKKV------FGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN 641

Query: 238 HNNLTG--LCGFP 248
              L+   LC  P
Sbjct: 642 IPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L  LDL +N L  +                L+H  +L++  N F+      F     L  
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFL-KGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGP 126
           ++L  N L         N   L+ LN+  N I              L  L +R N F   
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
                +I  F  +  I+ +H      L + YL N     HG  +    D  +  +S++++
Sbjct: 625 CE---SIAWF--VNWINETHTNIPE-LSSHYLCNTPPHYHGFPV-RLFDTSSCKDSAHHH 677

Query: 187 ES 188
             
Sbjct: 678 HH 679

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 37/211 (17%), Positives = 61/211 (28%), Gaps = 53/211 (25%)

Query: 62  SCNLTSLNLNG---------------------NRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
           + +    + +                      N+L      +      L  L+VG N I+
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 101 DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN 160
              P   + LP L+VL L+ N        + T     +L  + L  N     +       
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLS--DKTFAFCTNLTELHLMSNSIQK-IKNNPFVK 119

Query: 161 FKAM----MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK 216
            K +    +  N +S      T +   N      L                  + LS+NK
Sbjct: 120 QKNLITLDLSHNGLS-STKLGTQVQLEN------LQ----------------ELLLSNNK 156

Query: 217 FQGGIPEVVGKLNL--LKGLNISHNNLTGLC 245
            Q    E +       LK L +S N +    
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFS 187

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  114 bits (289), Expect = 7e-30
 Identities = 62/296 (20%), Positives = 95/296 (32%), Gaps = 86/296 (29%)

Query: 9   LYYLDLSNNFLTNIEYFPP-----TNMTQLNFDS-------------NLTH-KVLDMRMN 49
           +  LDLS   L      P        +  L                  LT    L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 50  NFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI 109
           N +G IP    +   L +L+ + N L G LPPS+ +  +L  +    N+I+   P+    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 110 LPEL-QVLILRSNRFWGPIGENTTIVPFP------SLRIIDLSHNEFTGVLLTGYLDNFK 162
             +L   + +  NR  G I         P      +L  +DLS N   G           
Sbjct: 172 FSKLFTSMTISRNRLTGKI---------PPTFANLNLAFVDLSRNMLEG----------- 211

Query: 163 AMMHGNNISVEVDYMTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ 218
                 + SV             + N     +  +                +DL +N+  
Sbjct: 212 ------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGL--------SKNLNGLDLRNNRIY 257

Query: 219 GGIPEVVGKLNLLKGLNISHNNLTG---------------------LCGFPLLESC 253
           G +P+ + +L  L  LN+S NNL G                     LCG P L +C
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP-LPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.9 bits (211), Expect = 6e-19
 Identities = 46/205 (22%), Positives = 76/205 (37%), Gaps = 39/205 (19%)

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGN-NQINDNFPN 105
             + G +     ++  + +L+L+G  L    P+P SL N  +L  L +G  N +    P 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 106 WLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKA 163
            +  L +L  L +      G I +   +    +L  +D S+N  +G L      L N   
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPD--FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 164 M-MHGNNIS----VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ 218
           +   GN IS          + L +S                          + +S N+  
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTS--------------------------MTISRNRLT 187

Query: 219 GGIPEVVGKLNLLKGLNISHNNLTG 243
           G IP     LNL   +++S N L G
Sbjct: 188 GKIPPTFANLNLAF-VDLSRNMLEG 211

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 3   DLGIATLYYLDLSNNFLT-NIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKF 59
                 L ++DLS N L  +         +              + +  N+    +  K 
Sbjct: 193 TFANLNLAFVDLSRNMLEGDA---SVLFGSDKNTQK--------IHLAKNSLAFDLG-KV 240

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
             S NL  L+L  NR+ G LP  L     L  LNV  N +    P     L    V    
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

Query: 120 SNR 122
           +N+
Sbjct: 300 NNK 302

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (263), Expect = 4e-25
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 44/251 (17%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK 61
           + + +L +LDLS N L+       +    T L        K LD+  N     +   F+ 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL--------KYLDLSFNGVIT-MSSNFLG 394

Query: 62  SCNLTSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
              L  L+   + L+     S  ++  +L  L++ +      F      L  L+VL +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS-VEVD 175
           N F      +       +L  +DLS  +    L     ++  ++    M  NN   ++  
Sbjct: 455 NSFQENFLPD-IFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 176 YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL-NLLKGL 234
               LNS        L +                +D S N       + +    + L  L
Sbjct: 513 PYKCLNS--------LQV----------------LDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 235 NISHNNLTGLC 245
           N++ N+    C
Sbjct: 549 NLTQNDFACTC 559

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.2 bits (245), Expect = 8e-23
 Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 39/236 (16%)

Query: 13  DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72
                    I    P N+       +  +  LD+  N         F     L  L+L+ 
Sbjct: 13  QCMELNFYKI----PDNLP-----FSTKN--LDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 73  NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132
             ++     +  +  HL  L +  N I          L  LQ L+            N  
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE--NFP 119

Query: 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS-VEVDYMTPLNSSNYYE 187
           I    +L+ ++++HN      L  Y  N   +    +  N I  +    +  L+      
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL-- 177

Query: 188 SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                             + +++DLS N      P    ++ L K L + +N  + 
Sbjct: 178 ------------------LNLSLDLSLNPMNFIQPGAFKEIRLHK-LTLRNNFDSL 214

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 36/250 (14%), Positives = 76/250 (30%), Gaps = 29/250 (11%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           +   LDLS N L ++  +   +  +L        +VLD+            +    +L++
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLST 80

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L L GN ++     +      L+ L      +       +  L  L+ L +  N      
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-F 139

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYE 187
                     +L  +DLS N+   +       + + +     +++ +D      S N   
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIY----CTDLRVLHQMPLLNLSLD-----LSLNPMN 190

Query: 188 SIILTI-KGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTGLC 245
            I     K I +           + L +N     + +     L  L+   +         
Sbjct: 191 FIQPGAFKEIRLH---------KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 246 GFPLLESCNI 255
                +   +
Sbjct: 242 NLEKFDKSAL 251

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 47/247 (19%), Positives = 78/247 (31%), Gaps = 20/247 (8%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L +LDLS+N + +I       + Q+     L +  LD+ +N  N   P  F K   L  L
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMP----LLNLSLDLSLNPMNFIQPGAF-KEIRLHKL 205

Query: 69  NLNGNRLEGPLPP-SLVNCHHLEVLN------VGNNQINDNFPNWLEILPELQVLILRSN 121
            L  N     +    +     LEV             +     + LE L  L +   R  
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 122 RFWGPIGENT-TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-MMHGNNISVEVDYMTP 179
                + +         ++    L       V    Y   ++   +              
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG----QFPT 321

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK--FQGGIPEVVGKLNLLKGLNIS 237
           L   +       + KG +   E  L     +DLS N   F+G   +       LK L++S
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 238 HNNLTGL 244
            N +  +
Sbjct: 382 FNGVITM 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 40/259 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KIPRKFVKSCNLTS 67
           L  L      L ++E FP  ++  L        K L++  N     K+P  F    NL  
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTL--------KELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEV----LNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           L+L+ N+++      L   H + +    L++  N +N   P   + +  L  L LR+N  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 212

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
              +   T I     L +  L   EF                 GN    +   +  L + 
Sbjct: 213 SLNV-MKTCIQGLAGLEVHRLVLGEFRN--------------EGNLEKFDKSALEGLCNL 257

Query: 184 NYYESIILTIKGIDIKMERILTIF------MTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
              E     +  +D  ++ I+ +F       +  L S   +             + L + 
Sbjct: 258 TIEE---FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELV 312

Query: 238 HNNLTGLCGFPLLESCNID 256
           +          L     + 
Sbjct: 313 NCKFGQFPTLKLKSLKRLT 331

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 39/264 (14%), Positives = 77/264 (29%), Gaps = 50/264 (18%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSC 63
           G+A L    L      N       + + L    NLT +   +   + +   I   F    
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN----DNFPNWLEI---------- 109
           N++S +L    +E             + L + N +          +   +          
Sbjct: 283 NVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 110 -----LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA- 163
                LP L+ L L  N        + +     SL+ +DLS N      ++      +  
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 398

Query: 164 ---MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG 220
                  +N+    ++   L+  N      L                  +D+S    +  
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRN------LIY----------------LDISHTHTRVA 436

Query: 221 IPEVVGKLNLLKGLNISHNNLTGL 244
              +   L+ L+ L ++ N+    
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQEN 460

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 34/211 (16%), Positives = 61/211 (28%), Gaps = 50/211 (23%)

Query: 36  DSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVG 95
              + +        NF  KIP       +  +L+L+ N L      S  +   L+VL++ 
Sbjct: 4   VEVVPNITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 96  NNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155
             +I        + L  L  LIL  N                SL+ +         +   
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASL--- 115

Query: 156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSN 215
                            E   +  L +                     L     ++++ N
Sbjct: 116 -----------------ENFPIGHLKT---------------------LK---ELNVAHN 134

Query: 216 KFQGG-IPEVVGKLNLLKGLNISHNNLTGLC 245
             Q   +PE    L  L+ L++S N +  + 
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  104 bits (261), Expect = 7e-25
 Identities = 42/251 (16%), Positives = 76/251 (30%), Gaps = 39/251 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSC-NLT 66
           L  L+L+ N +T I   P       NF       + L    N           KS   ++
Sbjct: 355 LASLNLAYNQITEI---PA------NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 67  SLNLNGNRLEG-------PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
           +++ + N +         PL P+     ++  +N+ NNQI+            L  + L 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 120 SNRFWGPIGENTTIVPF-----PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV 174
            N        +             L  IDL  N+ T +           ++         
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG-------- 517

Query: 175 DYMTPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233
                ++ S N +         ++    +   I    D   N+     PE +     L  
Sbjct: 518 -----IDLSYNSFSKFPTQP--LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 234 LNISHNNLTGL 244
           L I  N++  +
Sbjct: 571 LQIGSNDIRKV 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 35/260 (13%), Positives = 85/260 (32%), Gaps = 51/260 (19%)

Query: 9   LYYLDLSNNFLTNIEYFPP-----TNMTQLNFDSN--------LTHKVLDMRMNNFNGKI 55
              +   +N +T +          T + Q    ++           +  +          
Sbjct: 185 DTQIGQLSNNITFV---SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI--------NDNFPNWL 107
             K+    +LT + +        LP  L     ++++NV  N+         +       
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG 167
            +  ++Q++ +  N         T++     L +++  +N+  G      L  F     G
Sbjct: 302 PVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGK-----LPAF-----G 350

Query: 168 NNISVEVDYMTPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV-- 224
           + I +       LN + N    I     G   ++E        +  + NK +  IP +  
Sbjct: 351 SEIKLAS-----LNLAYNQITEIPANFCGFTEQVEN-------LSFAHNKLK-YIPNIFD 397

Query: 225 VGKLNLLKGLNISHNNLTGL 244
              ++++  ++ S+N +  +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSV 417

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 37/263 (14%), Positives = 76/263 (28%), Gaps = 53/263 (20%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFD-SNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           +  +D S N + +++      +    F   N++   +++  N  +      F     L+S
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS--SINLSNNQISKFPKELFSTGSPLSS 461

Query: 68  LNLNGNRLEG-------PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI-LPELQVLILR 119
           +NL GN L             +  N + L  +++  N++     ++    LP L  + L 
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 120 SNRFWG---PIGENTTIVPFPSLRIIDLSHNEFTGVL------LTG--YLDNFKAMMHGN 168
            N F         ++T+  F      D   N                  L      +  N
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ-----IGSN 576

Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
           +I                  +           E+I      +D+  N         V   
Sbjct: 577 DIR----------------KVN----------EKITPNISVLDIKDNPNISIDLSYVCPY 610

Query: 229 NLLKGLNISHNNLTGLCGFPLLE 251
                  + ++    + G   L+
Sbjct: 611 IEAGMYMLFYDKTQDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 25/259 (9%), Positives = 67/259 (25%), Gaps = 62/259 (23%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           I+     +       + +        + +F S+L      +  +     I +    +   
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDF-SDLIK--DCINSDPQQKSIKKSSRITLKD 185

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI-------------------NDNFPNW 106
           T +    N +   +  +++    L    +GN+                            
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 107 LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166
            + L +L  + + +      +     +   P +++I+++ N                   
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISG-------------- 288

Query: 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-IPEVV 225
                               +   L    +  K++        I +  N  +   +   +
Sbjct: 289 ---------------EQLKDDWQALADAPVGEKIQ-------IIYIGYNNLKTFPVETSL 326

Query: 226 GKLNLLKGLNISHNNLTGL 244
            K+  L  L   +N L G 
Sbjct: 327 QKMKKLGMLECLYNQLEGK 345

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 23/245 (9%), Positives = 62/245 (25%), Gaps = 48/245 (19%)

Query: 9   LYYLDLSNNFLTNIEYFPP--TNMTQLNFDSNLTHKVLDMRMNNFNG----KIPRKFVKS 62
           +  L L     +     P     +T+L        +VL +  +          P+    +
Sbjct: 83  VTGLSLEGFGASGR--VPDAIGQLTEL--------EVLALGSHGEKVNERLFGPKGISAN 132

Query: 63  CNLTSLNLNGNRLEGPLPPSL--VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
            +           +          +   L    + ++    +      I  +   +   S
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 121 NRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
           N            ++    LR   + ++ F    +    +N                   
Sbjct: 193 NNITFVS----KAVMRLTKLRQFYMGNSPFVAENICEAWENEN----------------- 231

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
              +  Y++  L            L     +++ +      +P  +  L  ++ +N++ N
Sbjct: 232 SEYAQQYKTEDLKWDN--------LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 240 NLTGL 244
                
Sbjct: 284 RGISG 288

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 27/197 (13%), Positives = 50/197 (25%), Gaps = 49/197 (24%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILR 119
            +T L+L G    G +P ++     LEVL +G++    N     P  +      +     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
              +         +   P     DL  +          +                     
Sbjct: 142 RMHYQKTF-----VDYDPREDFSDLIKDCINSDPQQKSI--------------------- 175

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
                              K  RI      I   SN     + + V +L  L+   + ++
Sbjct: 176 ------------------KKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNS 216

Query: 240 NLTGLCGFPLLESCNID 256
                      E+ N +
Sbjct: 217 PFVAENICEAWENENSE 233

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.4 bits (245), Expect = 7e-23
 Identities = 38/262 (14%), Positives = 75/262 (28%), Gaps = 41/262 (15%)

Query: 9   LYYLDLSNNFLTNIEYFP-PTNMTQLNFDSN-LTH------------KVLDMRMNNFNGK 54
           L  LD  +N + ++E F     +T L  D N +              + L    N     
Sbjct: 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 55  IPRKFVKSC-NLTSLNLNGNRLEG-----PLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
                 KS   + S++ + N++                 +   + +  N+I         
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 109 ILPELQVLILRSNRF-----WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
               +  +IL +N            ++        L  IDL  N+ T +           
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 164 MMHGNNISVEVDYMTPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222
           + +             ++ S N + S       ++    +   I    D   N+     P
Sbjct: 755 LSN-------------MDVSYNCFSSFPTQP--LNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 223 EVVGKLNLLKGLNISHNNLTGL 244
             +     L  L I  N++  +
Sbjct: 800 TGITTCPSLIQLQIGSNDIRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.1 bits (239), Expect = 5e-22
 Identities = 36/238 (15%), Positives = 73/238 (30%), Gaps = 44/238 (18%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNG-KIPRKFVKSCNLT 66
           L  L+++ N   +            + +      ++  M  NN           K   L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L+   N++      +      L  L +  NQI +   ++     +++ L    N+    
Sbjct: 577 LLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY- 633

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
           I           +  +D S+N+                    NIS  +D    +N+S   
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEG--------------RNISCSMDDYKGINAS--- 676

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
                                 T+ LS N+ Q    E+    + +  + +S+N +T +
Sbjct: 677 ----------------------TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.9 bits (228), Expect = 1e-20
 Identities = 31/248 (12%), Positives = 68/248 (27%), Gaps = 50/248 (20%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  +  +N+  T                  +  +  +             +    +LT +
Sbjct: 450 LQIIYFANSPFTYD---NIA----------VDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND---------NFPNWLEILPELQVLILR 119
            L        LP  L +   L+ LN+  N+               +  +  P++Q+  + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-MMHGNNISVEVDYMT 178
            N        + ++     L ++D  HN+   +   G         +  N I        
Sbjct: 557 YNNLEE-FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE------- 608

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLNI 236
                            I             +  S NK +  IP +    ++  +  ++ 
Sbjct: 609 ----------------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651

Query: 237 SHNNLTGL 244
           S+N +   
Sbjct: 652 SYNKIGSE 659

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 21/147 (14%)

Query: 9   LYYLDLSNNFLTNI-EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L  +DL  N LT++ + F  T +  L          +D+  N F+   P + + S  L +
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYL--------SNMDVSYNCFSS-FPTQPLNSSQLKA 780

Query: 68  LNL------NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
             +       GNR+    P  +  C  L  L +G+N I        ++ P+L +L +  N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE--KLTPQLYILDIADN 837

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNE 148
                  + T++ P+    +  L +++
Sbjct: 838 PNIS--IDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.0 bits (192), Expect = 5e-16
 Identities = 34/262 (12%), Positives = 75/262 (28%), Gaps = 53/262 (20%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           +  +D S N + +       +M       N +   + +  N         F     ++++
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKG-INAST--VTLSYNEIQKFPTELFATGSPISTI 702

Query: 69  NLNGNRLE-------GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI--LPELQVLILR 119
            L+ N +         P   +  N + L  +++  N++  +  +      LP L  + + 
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761

Query: 120 SNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS----VEV 174
            N F   P    T  +    L+   + H                    GN I       +
Sbjct: 762 YNCFSSFP----TQPLNSSQLKAFGIRHQRD---------------AEGNRILRQWPTGI 802

Query: 175 DYMTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-IPEVVGKLN 229
                L      SN    +           E++      +D++ N      +  V   + 
Sbjct: 803 TTCPSLIQLQIGSNDIRKVD----------EKLTPQLYILDIADNPNISIDVTSVCPYIE 852

Query: 230 LLKGLNISHNNLTGLCGFPLLE 251
                 + ++    + G   L 
Sbjct: 853 AGM-YVLLYDKTQDIRGCDALG 873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 1e-15
 Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 28/227 (12%)

Query: 32  QLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV 91
            L+ +  +T   L +      G++P    +   L  L+   +                ++
Sbjct: 318 DLDNNGRVTG--LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 92  LNVGNNQINDNFPN-WLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150
                ++I  ++   +L+    L +  L  +     I  N  + P      I L   +  
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA----INRNPEMKPIKKDSRISLKDTQIG 431

Query: 151 GV--LLTGYLDNFKAM-------MHGNNIS----VEVDYMTPLNSSNYYESIILTIKGID 197
            +   +T      + +          +  +             + +  YE+  L+     
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN-- 489

Query: 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
                 L     ++L +      +P+ +  L  L+ LNI+ N     
Sbjct: 490 ------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 4e-13
 Identities = 29/243 (11%), Positives = 66/243 (27%), Gaps = 29/243 (11%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
           LD  N    +       +    NF+  L         + +  +       +  +T L+L 
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKEL---------DMWGDQPGVDLDNNGRVTGLSLA 331

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
           G   +G +P ++     L+VL+ G +    +   + +      +   R +R      +  
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKM 390

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESI-- 189
            +     L + DL  +          +          +  + +      N +N    I  
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIK--------KDSRISLKDTQIGNLTNRITFISK 442

Query: 190 ---------ILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
                    I+         + I   +   +    K           L  L  + + +  
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 241 LTG 243
              
Sbjct: 503 NMT 505

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 41/246 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           L  LDLS++ +   +       N++ L        + L++  N         F +   L 
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHL--------QSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 67  SLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF-W 124
            L+L   RL+     S   N H L+VLN+ ++ ++ +     + LP LQ L L+ N F  
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPL 180
           G I +  ++     L I+ LS  + +  +      + K M    +  N ++         
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
               Y                        ++L+SN     +P ++  L+  + +N+  N 
Sbjct: 523 LKGIY------------------------LNLASNHISIILPSLLPILSQQRTINLRQNP 558

Query: 241 LTGLCG 246
           L   C 
Sbjct: 559 LDCTCS 564

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 37/247 (14%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           ++  ++L  ++  NI        + L        + LD+   + + ++P   V    L  
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGL--------QELDLTATHLS-ELPSGLVGLSTLKK 305

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNV-GNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           L L+ N+ E     S  N   L  L++ GN +  +     LE L  L+ L L  +     
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA----MMHGNNISVEVDYMTPLNS 182
              N  +     L+ ++LS+NE    L T             +    + V+       N 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
                   L                  ++LS +       ++   L  L+ LN+  N+  
Sbjct: 425 HL------LK----------------VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 243 GLCGFPL 249
                  
Sbjct: 463 KGNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.7 bits (236), Expect = 1e-21
 Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 30/264 (11%)

Query: 8   TLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTH---------------KVLDMRMNN 50
           T   L+L+ N +  IE   F       LNF                      +      +
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 51  FNGKIPRKFVKSC--NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
                P  F   C  ++ S+NL  +        +      L+ L++    ++   P+ L 
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM---- 164
            L  L+ L+L +N+F        +   FPSL  + +  N     L TG L+N + +    
Sbjct: 299 GLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 165 MHGNNISVEVDYMTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGI 221
           +  ++I         L + ++ +S+ L+      +  +  +       +DL+  + +   
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 222 PEVV-GKLNLLKGLNISHNNLTGL 244
            +     L+LLK LN+SH+ L   
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDIS 440

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.7 bits (223), Expect = 6e-20
 Identities = 43/248 (17%), Positives = 71/248 (28%), Gaps = 22/248 (8%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L L+ N L  +     +    L        K L       +            L SL
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKAL--------KHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV--LILRSNRFWGP 126
            L  N +     P       L+VL+  NN I+      +  L +     L L  N     
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-- 192

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN-----FKAMMHGNNISVEVDYMTPLN 181
            G           + ++    +   V+  G  ++     +       +       +    
Sbjct: 193 -GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 182 SSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
                ESI L       I        +    +DL++      +P  +  L+ LK L +S 
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA 310

Query: 239 NNLTGLCG 246
           N    LC 
Sbjct: 311 NKFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.3 bits (222), Expect = 8e-20
 Identities = 41/248 (16%), Positives = 76/248 (30%), Gaps = 23/248 (9%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           +   L+ S N L  I+    + +  L          LD+            F     L +
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINL--------TFLDLTRCQIYWIHEDTFQSQHRLDT 85

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L L  N L      +L     L+ L      I+      L     L+ L L SN      
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM------MHGNNISV---EVDYMT 178
                  P   L+++D  +N     L    + + +        ++GN+I+          
Sbjct: 146 --LPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLNI 236
              S N+  +  L +    +K   I ++           +   P V   L    ++ +N+
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSL-WLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 237 SHNNLTGL 244
             +    +
Sbjct: 262 QKHYFFNI 269

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 14/150 (9%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK---FVK 61
            +  L  L+LS++ L          +  L        + L+++ N+F     +K      
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPAL--------QHLNLQGNHFPKGNIQKTNSLQT 474

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
              L  L L+   L      +  +   +  +++ +N++  +    L  L  +  L L SN
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151
                +     +      R I+L  N    
Sbjct: 534 HISIILPS--LLPILSQQRTINLRQNPLDC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 39/243 (16%), Positives = 79/243 (32%), Gaps = 24/243 (9%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
               +  L+ +   P       +  S+  +  +D+  N         F     L  L+L+
Sbjct: 16  YQCMDQKLSKV---PD------DIPSSTKN--IDLSFNPLKILKSYSFSNFSELQWLDLS 64

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
              +E     +    HHL  L +  N I    P     L  L+ L+    +       + 
Sbjct: 65  RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE--SF 122

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS-VEVDYMTPL-NSSNY 185
            I    +L+ ++++HN      L  Y  N   +    +  N I  + V+ +  L  +   
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 186 YESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK-LNLLKGLNISHNNL 241
             S+ ++   I  I  +  + + +   + L  N     I +   + L  L    +     
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 242 TGL 244
              
Sbjct: 242 KDE 244

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.8 bits (218), Expect = 3e-19
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 39/244 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L YLDLS N L+       +++      ++L H  LD+  N     +   F+    L  L
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGT----NSLRH--LDLSFNGAII-MSANFMGLEELQHL 404

Query: 69  NLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           +   + L+     S  ++   L  L++       +F      L  L  L +  N F    
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS-VEVDYMTPLNS 182
             N       +L  +DLS  +    +  G  D    +    M  NN+  ++  +   L S
Sbjct: 465 LSN-VFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
                   L+                T+D S N+ +     +      L   N+++N++ 
Sbjct: 523 --------LS----------------TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

Query: 243 GLCG 246
            +C 
Sbjct: 559 CICE 562

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 35/252 (13%), Positives = 78/252 (30%), Gaps = 27/252 (10%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +A L+   L      +         + +    ++T     +   N       KF    N
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
           +++++L G  ++      +      + L++   Q+          LP L+ L L  N+  
Sbjct: 287 VSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNK-- 339

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFT----GVLLTGYLDNFKAM-MHGNNISVEVDYMTP 179
                +   V  PSL  +DLS N  +            ++ + + +  N   +       
Sbjct: 340 --GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 180 LN-------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232
           L          +  + +       +      L   + +D+S    +     +   L  L 
Sbjct: 398 LEELQHLDFQHSTLKRV------TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 233 GLNISHNNLTGL 244
            L ++ N+    
Sbjct: 452 TLKMAGNSFKDN 463

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 44/266 (16%), Positives = 78/266 (29%), Gaps = 37/266 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L +LDLS   +  IE      +  L          L +  N      P  F    +L +L
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHL--------SNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPI 127
                +L       +     L+ LNV +N I+    P +   L  L  + L  N      
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 128 GENTTIVPF--PSLRIIDLSHNEFTGVLLTGYLDNFKAM------MHGNNISVEVDYMTP 179
             +   +         +D+S N    +        F+ +      + GN  S  +     
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQ----DQAFQGIKLHELTLRGNFNSSNIMKTCL 225

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFM-------------TIDLSSNKFQGGIPEVVG 226
            N +      +  +   + K ER L IF                 L+             
Sbjct: 226 QNLAG---LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 227 KLNLLKGLNISHNNLTGLCGFPLLES 252
            L  +  ++++  ++  L   P    
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFK 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 25/136 (18%), Positives = 38/136 (27%), Gaps = 17/136 (12%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQL----------------NFDSNLTH-KVLDMR 47
            +  L YLD+S              +T L                N  +N T+   LD+ 
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 48  MNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL 107
                      F     L  LN++ N L           + L  L+   N+I  +     
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 108 EILPELQVLILRSNRF 123
                L    L +N  
Sbjct: 542 HFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 34/265 (12%), Positives = 72/265 (27%), Gaps = 35/265 (13%)

Query: 8   TLYYLDLSNNFLTNIE--YFPPTNMTQLNFDSN-------------LTH-KVLDMRMNNF 51
               LD+S N +  I+   F    + +L    N             L    V  + +  F
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 52  NGKIPRKFV--------KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF 103
             +   +              +    L                 ++  +++    I    
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301

Query: 104 PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
              +    + Q L +   +      +    +  P L+ + L+ N+ +       L +   
Sbjct: 302 D--VPKHFKWQSLSIIRCQL-----KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSY 354

Query: 164 M-MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI--LTIFMTIDLSSNKFQGG 220
           + +  N +S           +N    + L+  G  I       L     +D   +  +  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414

Query: 221 IP-EVVGKLNLLKGLNISHNNLTGL 244
                   L  L  L+IS+ N    
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKID 439

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
            L +LDLS   L  I +     + +L        ++L+M  NN        + +  +L++
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRL--------QLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI-----NDNFPNWL 107
           L+ + NR+E            L   N+ NN +     +  F  W+
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.4 bits (214), Expect = 8e-19
 Identities = 40/249 (16%), Positives = 85/249 (34%), Gaps = 24/249 (9%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSC 63
            + T   L LS N++  +       + QL        ++L++        I ++ F    
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQL--------QLLELGSQYTPLTIDKEAFRNLP 73

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSN 121
           NL  L+L  +++    P +     HL  L +    ++D      +   L  L  L L  N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM------MHGNNISVEVD 175
           +    +  + +     SL+ ID S N+   ++    L+  +        +  N++     
Sbjct: 134 QIRS-LYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLY-SRV 190

Query: 176 YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235
            +      N + +++L I  +D+               SN         +   + + G  
Sbjct: 191 SVDWGKCMNPFRNMVLEI--LDVSGNGWTVDIT--GNFSNAISKSQAFSLILAHHIMGAG 246

Query: 236 ISHNNLTGL 244
              +N+   
Sbjct: 247 FGFHNIKDP 255

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 52/246 (21%), Positives = 87/246 (35%), Gaps = 26/246 (10%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           ++ +LDLS+ F+ ++       +  L        KVL++  N  N      F    NL  
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDL--------KVLNLAYNKINKIADEAFYGLDNLQV 318

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           LNL+ N L      +      +  +++  N I        + L +LQ L LR N      
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL---- 374

Query: 128 GENTTIVPFPSLRIIDLSHNEFT----GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
              TTI   PS+  I LS N+        L    +   +  +   +I   +  +  L   
Sbjct: 375 ---TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI-----PEVVGKLNLLKGLNISH 238
              ++   +  G              + L  N  Q         +V   L+ L+ L ++H
Sbjct: 432 ILNQNRFSSCSGDQT--PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 239 NNLTGL 244
           N L  L
Sbjct: 490 NYLNSL 495

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 4e-15
 Identities = 40/248 (16%), Positives = 81/248 (32%), Gaps = 22/248 (8%)

Query: 8   TLYYLDLSNNFLTNIEYF----PPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
            L  LD+S N  T           +     +              +N        F    
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 64  --NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
             ++  L+L+   +             L+VLN+  N+IN         L  LQVL L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYM 177
                   ++     P +  IDL  N    ++        + +    +  N ++  + ++
Sbjct: 325 LL--GELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-TIHFI 380

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLNI 236
             +       + ++T+  I++           I LS N+ +   I   + ++  L+ L +
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTAN-------LIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 237 SHNNLTGL 244
           + N  +  
Sbjct: 434 NQNRFSSC 441

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.1 bits (177), Expect = 4e-14
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 23/186 (12%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPP------------TNMTQLNFDSNLTH-KVLDMRMNNF 51
            I ++  + LS N L  +                  N+  L F   + H ++L +  N F
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438

Query: 52  NGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSL-----VNCHHLEVLNVGNNQINDNFPN 105
           +     +   ++ +L  L L  N L+      L         HL+VL + +N +N   P 
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498

Query: 106 WLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165
               L  L+ L L SNR    +   +      +L I+D+S N+        ++      +
Sbjct: 499 VFSHLTALRGLSLNSNR----LTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDI 554

Query: 166 HGNNIS 171
             N   
Sbjct: 555 THNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 50/275 (18%), Positives = 89/275 (32%), Gaps = 41/275 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKF--VKSCNL 65
           L  LDLS N + ++   P    +  L        K +D   N        +   ++   L
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSL--------KSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 66  TSLNLNGNRLEGPLPPSLVNCH------HLEVLNVGNNQIN----DNFPN--------WL 107
           +  +L  N L   +      C        LE+L+V  N        NF N         L
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM--- 164
            +   +       +    P       +   S+R +DLSH      L +   +  K +   
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVL 295

Query: 165 -MHGNNIS-VEVDYMTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQG 219
            +  N I+ +  +    L++    + + L+   +  +       L     IDL  N    
Sbjct: 296 NLAYNKINKIADEAFYGLDN---LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352

Query: 220 GIPEVVGKLNLLKGLNISHNNLTGLCGFPLLESCN 254
              +    L  L+ L++  N LT +   P +    
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 18/108 (16%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
           G++ L  L L++N+L ++     +++T L        + L +  N     +    + + N
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTAL--------RGLSLNSNRLT-VLSHNDLPA-N 527

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI-----NDNFPNWL 107
           L  L+++ N+L  P P        L VL++ +N+         F NWL
Sbjct: 528 LEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWL 572

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 32/243 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
                ++++ L         +   +        K LD+  N  +            L  L
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNV--------KELDLSGNPLSQISAADLAPFTKLELL 63

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           NL+ N L       L +   L  L++ NN + +     L + P ++ L   +N       
Sbjct: 64  NLSSNVLYET--LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI----- 111

Query: 129 ENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH----GNNISVEVDYMTPLNS 182
             + +        + I L++N+ T  L          + +     N I   V++     S
Sbjct: 112 --SRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAAS 167

Query: 183 SNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
           S+  E + L    I D+K + +     T+DLSSNK    +         +  +++ +N L
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226

Query: 242 TGL 244
             +
Sbjct: 227 VLI 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 42/248 (16%), Positives = 78/248 (31%), Gaps = 41/248 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           +  LDLS N L+ I        T+L        ++L++  N     +         L +L
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKL--------ELLNLSSNVLYETLD--LESLSTLRTL 85

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           +LN N ++      L+    +E L+  NN I+             + + L +N+      
Sbjct: 86  DLNNNYVQ-----ELLVGPSIETLHAANNNISR-VS--CSRGQGKKNIYLANNKITML-- 135

Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLN--- 181
            +        ++ +DL  NE   V       +   +    +  N I  +V          
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLK 194

Query: 182 ----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
               SSN    +    +               I L +NK    I + +     L+  ++ 
Sbjct: 195 TLDLSSNKLAFMGPEFQS--------AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245

Query: 238 HNNLTGLC 245
            N      
Sbjct: 246 GNGFHCGT 253

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 44/214 (20%)

Query: 38  NLTH-KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN 96
           N    K+  +  ++    +      + N+  L+L+GN L       L     LE+LN+ +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 97  NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV---L 153
           N + +     LE L  L+ L L +N           ++  PS+  +  ++N  + V    
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYV-------QELLVGPSIETLHAANNNISRVSCSR 118

Query: 154 LTG--YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTID 211
             G   +      +  N I+                        +    E   +    +D
Sbjct: 119 GQGKKNIY-----LANNKIT-----------------------MLRDLDEGCRSRVQYLD 150

Query: 212 LSSNKFQG-GIPEVVGKLNLLKGLNISHNNLTGL 244
           L  N+       E+    + L+ LN+ +N +  +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 28/157 (17%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L +L+L  NF+ +++        +L        K LD+  N     +  +F  +  +T +
Sbjct: 171 LEHLNLQYNFIYDVK--GQVVFAKL--------KTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN-DNFPNWLEILPELQVLILRSNRF-WGP 126
           +L  N+L   +  +L    +LE  ++  N  +     ++      +Q +  ++ +   G 
Sbjct: 220 SLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 127 IGENTTIVPFPS--------------LRIIDLSHNEF 149
             E  T+                    R+I L H+  
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 34/244 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
                ++++ L         +   +        K LD+  N  +            L  L
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNV--------KELDLSGNPLSQISAADLAPFTKLELL 63

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           NL+ N L       L +   L  L++ NN + +     L + P ++ L   +N       
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI----- 111

Query: 129 ENTTIVP---FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH----GNNISVEVDYMTPLN 181
              + V        + I L++N+ T  L          + +     N I   V++     
Sbjct: 112 ---SRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA 166

Query: 182 SSNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
           SS+  E + L    I D+K + +     T+DLSSNK    +         +  +++ +N 
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 241 LTGL 244
           L  +
Sbjct: 226 LVLI 229

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 38/247 (15%), Positives = 73/247 (29%), Gaps = 63/247 (25%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN-LTH-------KVLDMRMNNFNGKIPRKF 59
           L  L+LS+N L         + +  L+ ++N +         + L    NN +     + 
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLIL 118
                  ++ L  N++             ++ L++  N+I+  NF         L+ L L
Sbjct: 120 Q---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178
           + N     I +    V F  L+ +DLS N+                     +  E     
Sbjct: 177 QYNF----IYDVKGQVVFAKLKTLDLSSNKLA------------------FMGPEFQSAA 214

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
            +                             I L +NK    I + +     L+  ++  
Sbjct: 215 GVT---------------------------WISLRNNKLVL-IEKALRFSQNLEHFDLRG 246

Query: 239 NNLTGLC 245
           N      
Sbjct: 247 NGFHCGT 253

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 30/261 (11%), Positives = 72/261 (27%), Gaps = 35/261 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH------------KVLDMRMNNFNGKI 55
           +  L  +NN ++ +          +   +N +T             + LD+++N  +   
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 56  PRKFVKSC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
             +   S   L  LNL  N +   +   +     L+ L++ +N++        +    + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 115 VLILRSNRFWGPIGENTTI----VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM---HG 167
            + LR+N+          I        +L   DL  N F    L  +    + +      
Sbjct: 218 WISLRNNKL-------VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG----GIPE 223
               +                     + +       L      + +    QG     +  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 224 VVGKLNLLKGLNISHNNLTGL 244
                   + ++        +
Sbjct: 331 ERENQARQREIDALKEQYRTV 351

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.2 bits (177), Expect = 3e-14
 Identities = 31/243 (12%), Positives = 74/243 (30%), Gaps = 20/243 (8%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTS 67
           + YLDL  N +  + +            ++    + L+++ N       +       L +
Sbjct: 146 VQYLDLKLNEIDTVNF--------AELAASSDTLEHLNLQYNFIYDVKGQVVFA--KLKT 195

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L+L+ N+L   + P   +   +  +++ NN++       L     L+   LR N  +   
Sbjct: 196 LDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG-FHCG 252

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNI--SVEVDYMTPLNSSNY 185
                      ++ +     +                 +G      +   +   L +   
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312

Query: 186 YESIILTIKGIDIKMERILTIFMT----IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
            E  +L+ +G + +              ID    +++  I +V  +      L      L
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 242 TGL 244
              
Sbjct: 373 DEQ 375

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 30/241 (12%), Positives = 75/241 (31%), Gaps = 17/241 (7%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L +L+L  NF+ +++        +L        K LD+  N     +  +F  +  +T +
Sbjct: 171 LEHLNLQYNFIYDVK--GQVVFAKL--------KTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN-DNFPNWLEILPELQVLILRSNRFWGPI 127
           +L  N+L   +  +L    +LE  ++  N  +     ++      +Q +  ++ +     
Sbjct: 220 SLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 128 GENTTIVPF----PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
            E    VP      +    DL       ++     ++      G+               
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
              +++    + +  ++       +T++         +         L G          
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 244 L 244
           L
Sbjct: 399 L 399

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 10/140 (7%), Positives = 30/140 (21%), Gaps = 4/140 (2%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
                       ++       +  L    +           +   ++  +         +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ----GSETERLECERENQARQREI 341

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           +    +    +    +       L      +++   N      EL   + ++        
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH 401

Query: 129 ENTTIVPFPSLRIIDLSHNE 148
                 P   LR I   + E
Sbjct: 402 ATEEQSPLQLLRAIVKRYEE 421

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 52/254 (20%), Positives = 94/254 (37%), Gaps = 33/254 (12%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  L  L L+ + +++I      N+T++          L++   N N            
Sbjct: 108 NLTNLRELYLNEDNISDISPL--ANLTKM--------YSLNLG-ANHNLSDLSPLSNMTG 156

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
           L  L +  ++++      + N   L  L++  NQI D  P  L  L  L       N+  
Sbjct: 157 LNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI- 211

Query: 125 GPIGENTTIVPF---PSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISV--EVDYMT 178
                 T I P      L  + + +N+ T +     L     + +  N IS    V  +T
Sbjct: 212 ------TDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLT 265

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
            L   N   + I  I  ++      L+   ++ L++N+      EV+G L  L  L +S 
Sbjct: 266 KLKMLNVGSNQISDISVLNN-----LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 239 NNLTGLCGFPLLES 252
           N++T +     L  
Sbjct: 321 NHITDIRPLASLSK 334

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 4e-15
 Identities = 42/243 (17%), Positives = 94/243 (38%), Gaps = 29/243 (11%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           ++  L ++   + +I+      +T L        + L++  N      P        LT+
Sbjct: 45  SITKLVVAGEKVASIQGI--EYLTNL--------EYLNLNGNQITDISP--LSNLVKLTN 92

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L +  N++      +L N  +L  L +  + I+D  P  L  L ++  L L +N     +
Sbjct: 93  LYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHN---L 145

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISV--EVDYMTPLNSSN 184
            + + +     L  + ++ ++   V     L +  ++ ++ N I     +  +T L+   
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFT 205

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
            Y + I  I  +       +T   ++ + +NK     P  +  L+ L  L I  N ++ +
Sbjct: 206 AYVNQITDITPVA-----NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258

Query: 245 CGF 247
              
Sbjct: 259 NAV 261

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 14/103 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKIP 56
           L +L++  N +++I      T +  LN  SN          L+    L +  N    +  
Sbjct: 245 LTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 57  RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
                  NLT+L L+ N +       L +   ++  +  N  I
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 29/180 (16%)

Query: 89  LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGEN---------------TTI 133
              L      IN  FP     L E    +L+       + +                 +I
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59

Query: 134 VPF---PSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISV--EVDYMTPLNSSNYYE 187
                  +L  ++L+ N+ T +     L     + +  N I+    +  +T L      E
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE 119

Query: 188 SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGF 247
             I  I  +       LT   +++L +N         +  +  L  L ++ + +  +   
Sbjct: 120 DNISDISPLA-----NLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPI 173

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 42/258 (16%), Positives = 82/258 (31%), Gaps = 35/258 (13%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
            +   LDLS N L ++  +   +  +L        +VLD+            +    +L+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           +L L GN ++     +      L+ L      +       +  L  L+ L +  N     
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QS 138

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
                      +L  +DLS N+   +    Y  + + +     +++ +D      S N  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSI----YCTDLRVLHQMPLLNLSLDL-----SLNPM 189

Query: 187 ESIILTI-KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK-------LNLLKGLNISH 238
             I     K I +           + L +N     + +   +         L+ G   + 
Sbjct: 190 NFIQPGAFKEIRLH---------KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 239 NNLTGLCGFPLLESCNID 256
            NL       L   CN+ 
Sbjct: 241 GNLEKFDKSALEGLCNLT 258

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 8e-16
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
           LG+  L +LD  ++ L  +  F    ++  L          LD+   +        F   
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--------IYLDISHTHTRVAFNGIFNGL 444

Query: 63  CNLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
            +L  L + GN  +    P       +L  L++   Q+    P     L  LQVL + SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEF 149
           +       +       SL+ I L  N +
Sbjct: 505 QLKSV--PDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 36/252 (14%), Positives = 81/252 (32%), Gaps = 38/252 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-----------KVLDMRMNNFN--GKI 55
             +L+L N            ++ +L F SN              + LD+  N  +  G  
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQ 114
            +    + +L  L+L+ N +   +  + +    LE L+  ++ +      +    L  L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 115 VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV 174
            L +           N       SL ++ ++ N F    L       + +          
Sbjct: 425 YLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-------- 474

Query: 175 DYMTPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233
                L+ S          ++ +       L+    ++++SN+ +     +  +L  L+ 
Sbjct: 475 -----LDLSQCQ-------LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 234 LNISHNNLTGLC 245
           + +  N     C
Sbjct: 523 IWLHTNPWDCSC 534

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 8e-15
 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
           + + +L +LDLS N L+        +       ++L +  LD+  N     +   F+   
Sbjct: 344 VDLPSLEFLDLSRNGLSFKG-CCSQSDFGT---TSLKY--LDLSFNGVI-TMSSNFLGLE 396

Query: 64  NLTSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
            L  L+   + L+     S  ++  +L  L++ +      F      L  L+VL +  N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
           F      +       +L  +DLS  +   +
Sbjct: 457 FQENFLPD-IFTELRNLTFLDLSQCQLEQL 485

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 9e-15
 Identities = 36/248 (14%), Positives = 74/248 (29%), Gaps = 50/248 (20%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  +    L +  +  ++ F         ++    H  L++    F      K     +
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFS--------YNFGWQH--LELVNCKFGQFPTLKLK---S 326

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNR 122
           L  L    N+       S V+   LE L++  N ++              L+ L L  N 
Sbjct: 327 LKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNI-SVEVDYM 177
               I  ++  +    L  +D  H+    +       + + +    +   +         
Sbjct: 385 V---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI-PEVVGKLNLLKGLNI 236
             L+S                     L     + ++ N FQ    P++  +L  L  L++
Sbjct: 442 NGLSS---------------------LE---VLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 237 SHNNLTGL 244
           S   L  L
Sbjct: 478 SQCQLEQL 485

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 42/283 (14%), Positives = 84/283 (29%), Gaps = 51/283 (18%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L L+ N + ++     + ++ L        + L     N              L  L
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSL--------QKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 69  NLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           N+  N +    LP    N  +LE L++ +N+I   +   L +L ++ +L L  +    P+
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 128 GE-NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-----------MMHGNNISVEVD 175
                       L  + L +N  +  ++   +                   GN    +  
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 176 YMTPLNSSNYYESIILTIKGIDIKMERILTIF------MTIDLSSNKFQGGIPEVVGKLN 229
            +  L +    E     +  +D  ++ I+ +F       +  L S   +  + +      
Sbjct: 250 ALEGLCNLTIEE---FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFG 305

Query: 230 L--------------------LKGLNISHNNLTGLCGFPLLES 252
                                LK L  + N          L S
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 47/243 (19%), Positives = 77/243 (31%), Gaps = 32/243 (13%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSC 63
           G+A L    L      N       + + L    NLT +   +   + +   I   F    
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           N++S +L    +E             + L + N +    FP     L  L+ L   SN+ 
Sbjct: 283 NVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNK- 336

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-S 182
               G   + V  PSL  +DLS N  +            +       S++      L+ S
Sbjct: 337 ---GGNAFSEVDLPSLEFLDLSRNGLSFK-------GCCSQSDFGTTSLKY-----LDLS 381

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNL 241
            N   ++     G        L     +D   +  +      V   L  L  L+ISH + 
Sbjct: 382 FNGVITMSSNFLG--------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 242 TGL 244
              
Sbjct: 434 RVA 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.5 bits (191), Expect = 6e-16
 Identities = 34/243 (13%), Positives = 81/243 (33%), Gaps = 16/243 (6%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKS 62
            +++L YL+L  N    +       N+T L        + L +       +I R  F   
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNL--------QTLRIGNVETFSEIRRIDFAGL 147

Query: 63  CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
            +L  L +    L      SL +   +  L +  ++       + +IL  ++ L LR   
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 123 FWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN 181
                            ++ +    +  T       L   + ++  + +  +   +  L 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
             N  ES +++    ++     +TI   + +        +  V   L  +K + + ++ +
Sbjct: 268 DFNPSESDVVS----ELGKVETVTI-RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 242 TGL 244
             +
Sbjct: 323 FLV 325

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 38/256 (14%), Positives = 88/256 (34%), Gaps = 33/256 (12%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
           L ++ + + D + N L +        +++L     +T + L +        +   +    
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF---PNWLEILPELQVLILRS 120
            +  + +  +++         +   LE L++  N + + +          P LQ L+L  
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV-----LLTG--YLDNFKAMMHGNNI-SV 172
           N           ++   +L  +D+S N F  +           +L+     +    I  V
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN-----LSSTGIRVV 425

Query: 173 EVDYMTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
           +      L     S+N        +    + + R+      + +S NK +  +P+     
Sbjct: 426 KTCIPQTLEVLDVSNNN-------LDSFSLFLPRL----QELYISRNKLK-TLPDAS-LF 472

Query: 229 NLLKGLNISHNNLTGL 244
            +L  + IS N L  +
Sbjct: 473 PVLLVMKISRNQLKSV 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 34/238 (14%), Positives = 76/238 (31%), Gaps = 31/238 (13%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
            D  +   T+I    P+ +T     + +    LD+  N              NL  L L 
Sbjct: 10  CDGRSRSFTSI----PSGLT-----AAMKS--LDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
            +R+      +  +   LE L++ +N ++    +W   L  L+ L L  N +   +G  +
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTS 117

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191
                 +L+ + + + E    +         ++               L           
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE-------------LEIKALS----- 159

Query: 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPL 249
            ++    +  + +     + L  ++    +      L+ ++ L +   NL      PL
Sbjct: 160 -LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 31/248 (12%), Positives = 79/248 (31%), Gaps = 53/248 (21%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           +  + + N+ +  +      ++  L        + LD+  N    +  +         SL
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSL--------EFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 69  ---NLNGNRLE--GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
               L+ N L         L+   +L  L++  N  +   P+  +   +++ L L S   
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 124 WGPIGENTTIVP---FPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTP 179
                    +V      +L ++D+S+N       + +L   + + +  N +         
Sbjct: 423 --------RVVKTCIPQTLEVLDVSNNNLDS--FSLFLPRLQELYISRNKLK-------- 464

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
                             +    +  + + + +S N+ +     +  +L  L+ + +  N
Sbjct: 465 -----------------TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 240 NLTGLCGF 247
                C  
Sbjct: 508 PWDCSCPR 515

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 40/266 (15%), Positives = 88/266 (33%), Gaps = 23/266 (8%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           A +  LDLS N +T I +        L        +VL ++ +  N      F    +L 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANL--------QVLILKSSRINTIEGDAFYSLGSLE 77

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWG 125
            L+L+ N L             L+ LN+  N        +    L  LQ L + +   + 
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS----VEVDYM 177
            I          SL  +++          +  L + + +    +H +  +    +  D +
Sbjct: 138 EI-RRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKG 233
           + +      ++ +   +   + ++ + +    +    +         + +++  +  L  
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 234 LNISHNNLTGLCGFPLLESCNIDEAP 259
           +      L GL  F   ES  + E  
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELG 281

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 32/161 (19%)

Query: 8   TLYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           +L  L LS N L +++        +  L          LD+  N F+  +P        +
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNL--------TSLDISRNTFH-PMPDSCQWPEKM 412

Query: 66  TSLNLNGNRLE---GPLPPSL--------------VNCHHLEVLNVGNNQINDNFPNWLE 108
             LNL+   +      +P +L              +    L+ L +  N++       L 
Sbjct: 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL- 471

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149
             P L V+ +  N+       +       SL+ I L  N +
Sbjct: 472 -FPVLLVMKISRNQLKSV--PDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 28/254 (11%), Positives = 68/254 (26%), Gaps = 37/254 (14%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
           G+ +L  L++    L N +     ++  +          L + ++     +        +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDI--------HHLTLHLSESAFLLEIFADILSS 197

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND----------NFPNWLEILPELQ 114
           +  L L    L       L        +     + +               ++  L E++
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 115 VLILRSNRF-WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVE 173
                 N        E+  +     +  + +         L   L      ++     V+
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST----VYSLLEKVK 313

Query: 174 VDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI---PEVVGKLNL 230
              +     ++        +  +     + L     +DLS N             G    
Sbjct: 314 RITV----ENSK-------VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 231 LKGLNISHNNLTGL 244
           L+ L +S N+L  +
Sbjct: 363 LQTLVLSQNHLRSM 376

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 36/261 (13%), Positives = 77/261 (29%), Gaps = 56/261 (21%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG--KIPRKFVKS 62
            ++++ YL+L +  L   ++ P       +    L  +   +   +FN   K+ R  ++ 
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 63  CNLTSLNLNGNRL--------EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
             +   +   N L        +       V    +  L++    +  +      +L +++
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 115 VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV 174
            + + +++ +      +      SL  +DLS N      L                S   
Sbjct: 314 RITVENSKVFLV--PCSFSQHLKSLEFLDLSENLMVEEYLKN--------------SACK 357

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ--GGIPEVVGKLNLLK 232
                L                            T+ LS N  +      E++  L  L 
Sbjct: 358 GAWPSLQ---------------------------TLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 233 GLNISHNNLTGL-CGFPLLES 252
            L+IS N    +       E 
Sbjct: 391 SLDISRNTFHPMPDSCQWPEK 411

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 11/105 (10%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLN--------FDSNLTH-KVLDMRMNNFNGKI 55
               + +L+LS+  +  ++   P  +  L+        F   L   + L +  N      
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLP 467

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
                    L  + ++ N+L+            L+ + +  N  +
Sbjct: 468 DASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.3 bits (191), Expect = 7e-16
 Identities = 61/260 (23%), Positives = 99/260 (38%), Gaps = 33/260 (12%)

Query: 8   TLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKI 55
            L  L L NN +T+I+     TN+ +L   SN          LT  + L    N      
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLK 171

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
           P        L  L+++ N++       L    +LE L   NNQI+D  P  L IL  L  
Sbjct: 172 P--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 225

Query: 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS--V 172
           L L  N+    + +  T+    +L  +DL++N+ + +     L     + +  N IS   
Sbjct: 226 LSLNGNQ----LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 281

Query: 173 EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232
            +  +T L +    E+ +  I  I       L     + L  N      P  V  L  L+
Sbjct: 282 PLAGLTALTNLELNENQLEDISPIS-----NLKNLTYLTLYFNNISDISP--VSSLTKLQ 334

Query: 233 GLNISHNNLTGLCGFPLLES 252
            L   +N ++ +     L +
Sbjct: 335 RLFFYNNKVSDVSSLANLTN 354

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.2 bits (183), Expect = 6e-15
 Identities = 55/242 (22%), Positives = 99/242 (40%), Gaps = 36/242 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  LD+S+N +++I       +T L        + L    N  +   P   +   NL  L
Sbjct: 179 LERLDISSNKVSDISVL--AKLTNL--------ESLIATNNQISDITPLGILT--NLDEL 226

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           +LNGN+L+     +L +  +L  L++ NNQI++  P  L  L +L  L L +N+      
Sbjct: 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI----- 277

Query: 129 ENTTIVPF---PSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS--VEVDYMTPLNS 182
             + I P     +L  ++L+ N+   +     L N   + ++ NNIS    V  +T L  
Sbjct: 278 --SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR 335

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
             +Y + +  +  +       LT    +    N+     P  +  L  +  L ++    T
Sbjct: 336 LFFYNNKVSDVSSLA-----NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388

Query: 243 GL 244
             
Sbjct: 389 NA 390

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 51/255 (20%), Positives = 87/255 (34%), Gaps = 38/255 (14%)

Query: 9   LYYLDLSNNFLTNIEYFP-PTNMTQLNFDSN----------LTH-KVLDMRMNNFNGKIP 56
           L  L  +NN +++I      TN+ +L+ + N          LT+   LD+  N  +   P
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260

Query: 57  RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116
                   LT L L  N++       L     L  L +  NQ+ D  P  +  L  L  L
Sbjct: 261 --LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314

Query: 117 ILRSNRFWGPIGENTTIVPF---PSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISV 172
            L  N         + I P      L+ +   +N+ + V     L N   +    N IS 
Sbjct: 315 TLYFNNI-------SDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS- 366

Query: 173 EVDYMTPLNSSNYYESIIL---TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229
               +TPL +      + L         +  +  ++I  T+   +       P  +    
Sbjct: 367 ---DLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGG 421

Query: 230 LLKGLNISHNNLTGL 244
                +I+ N  +  
Sbjct: 422 SYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.8 bits (174), Expect = 9e-14
 Identities = 52/260 (20%), Positives = 93/260 (35%), Gaps = 33/260 (12%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYF-PPTNMTQLNFDSN----------LTH-KVLDMRMNN 50
           D  +A      L    +T+         +T L  D            L +   ++   N 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 79

Query: 51  FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEIL 110
                P        L  + +N N++       L N  +L  L + NNQI D   + L+ L
Sbjct: 80  LTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNL 133

Query: 111 PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNN 169
             L  L L SN     I + + +    SL+ +    N+ T +     L   + + +  N 
Sbjct: 134 TNLNRLELSSNT----ISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNK 188

Query: 170 ISV--EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK 227
           +S    +  +T L S     + I  I  +      ILT    + L+ N+ +      +  
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITPLG-----ILTNLDELSLNGNQLKD--IGTLAS 241

Query: 228 LNLLKGLNISHNNLTGLCGF 247
           L  L  L++++N ++ L   
Sbjct: 242 LTNLTDLDLANNQISNLAPL 261

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 37/240 (15%), Positives = 80/240 (33%), Gaps = 49/240 (20%)

Query: 14  LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73
             +  +  I  F  T + +             +   N    + +  +    +T+L  +  
Sbjct: 9   TQDTPINQI--FTDTALAEK--------MKTVLGKTNVTDTVSQTDLD--QVTTLQADRL 56

Query: 74  RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI 133
            ++      +   ++L  +N  NNQ+ D  P  L+ L +L  +++ +N+          +
Sbjct: 57  GIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----L 108

Query: 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNYYESIILT 192
               +L  + L +N+ T +     L N   + +  N IS                     
Sbjct: 109 ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS--------------------- 147

Query: 193 IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLES 252
               DI     LT    +   +        + +  L  L+ L+IS N ++ +     L +
Sbjct: 148 ----DISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISVLAKLTN 200

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 46/246 (18%), Positives = 76/246 (30%), Gaps = 33/246 (13%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
           LGI+ L  L L N  +T     P    T  + +      V     + +  ++        
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ--QWLKP 149

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI----LPELQVLILR 119
            L  L++            +     L  L++ +N           +     P LQVL LR
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 120 SNRFWGPIGE-NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178
           +     P G  +        L+ +DLSHN           D    +              
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS------------ 257

Query: 179 PLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
            LN S    + +    KG+  K+         +DLS N+     P    +L  +  L++ 
Sbjct: 258 -LNLSFTGLKQVP---KGLPAKLS-------VLDLSYNRLDR-NPSP-DELPQVGNLSLK 304

Query: 238 HNNLTG 243
            N    
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 1e-12
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPR-KFVKSCNLTS 67
           L  L L N  +                   L    LD+  N+               L S
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAAR---VQLQG--LDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           LNL+   L+  +P  L     L VL++  N+++   P+  E LP++  L L+ N F   
Sbjct: 258 LNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPFLDS 311

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 43/245 (17%), Positives = 92/245 (37%), Gaps = 38/245 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTS 67
           +  L +  N +  +      N+  L         VL +  N+ +  +PR  F  +  LT+
Sbjct: 95  IQKLYMGFNAIRYLPPHVFQNVPLL--------TVLVLERNDLS-SLPRGIFHNTPKLTT 145

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L+++ N LE     +      L+ L + +N++       L ++P L    +  N      
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL---- 198

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLN----- 181
              +T+    ++  +D SHN    V+          + +  NN++ +  ++         
Sbjct: 199 ---STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEV 253

Query: 182 --SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
             S N        ++ I       +     + +S+N+    +      +  LK L++SHN
Sbjct: 254 DLSYNE-------LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305

Query: 240 NLTGL 244
           +L  +
Sbjct: 306 HLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 22/171 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L L +N LT+  +    N   L          +D+  N     +   FVK   L  L
Sbjct: 228 LTILKLQHNNLTDTAWL--LNYPGL--------VEVDLSYNELEKIMYHPFVKMQRLERL 277

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
            ++ NRL   L         L+VL++ +N +  +          L+ L L  N       
Sbjct: 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSI----- 330

Query: 129 ENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDN-FKAMMHGNNISVEVDY 176
              T+      +L+ + LSHN++    L     N  +  +   +   ++DY
Sbjct: 331 --VTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 29/241 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           +  L+L++  +  I+ +       +        + L M  N      P  F     LT L
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTI--------QKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
            L  N L         N   L  L++ NN +     +  +    LQ L L SNR      
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL----- 177

Query: 129 ENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
             T +     PSL   ++S+N  + + +   ++        N+I+V       +      
Sbjct: 178 --THVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL--DASHNSINV-------VRGPVNV 226

Query: 187 ESIILTIKG---IDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
           E  IL ++     D          + +DLS N+ +  +     K+  L+ L IS+N L  
Sbjct: 227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286

Query: 244 L 244
           L
Sbjct: 287 L 287

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 53/240 (22%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L +SNN L  IE       T L        + L +  N     +    +   +L   
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSL--------QNLQLSSNRLT-HVDLSLIP--SLFHA 191

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           N++ N L      +L     +E L+  +N IN        +  EL +L L+ N     + 
Sbjct: 192 NVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNN----LT 239

Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSSN 184
           +   ++ +P L  +DLS+NE    ++       + +    +  N +     Y  P+ +  
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-- 296

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
                              L +   +DLS N     +     + + L+ L + HN++  L
Sbjct: 297 -------------------LKV---LDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 38/236 (16%), Positives = 68/236 (28%), Gaps = 27/236 (11%)

Query: 33  LNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVL 92
            N   +     + + M   +     + +   N   +    + +       L +   +E+L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 93  NVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
           N+ + QI +           +Q L +  N               P L ++ L  N+ +  
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLS-S 131

Query: 153 LLTGYLDNFKAM----MHGNNI-SVEVDYMTPLN-------SSNYYESI---------IL 191
           L  G   N   +    M  NN+  +E D             SSN    +           
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191

Query: 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGF 247
            +    +    I      +D S N     +         L  L + HNNLT     
Sbjct: 192 NVSYNLLSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDTAWL 244

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 29/212 (13%)

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           I       C    ++++    +       +  ++ +++   N+ +       L+   +++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 115 VLILRSNRFWGPIGE--NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGN 168
           +L L   +    I E          +++ + +  N     L      N   +    +  N
Sbjct: 73  LLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 169 NI-SVEVDYMTPLN-------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG 220
           ++ S+                S+N        ++ I+    +  T    + LSSN+    
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNN-------LERIEDDTFQATTSLQNLQLSSNRLT-H 179

Query: 221 IPEVVGKLNLLKGLNISHNNLTGLCGFPLLES 252
           +      +  L   N+S+N L+ L     +E 
Sbjct: 180 VDL--SLIPSLFHANVSYNLLSTLAIPIAVEE 209

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 4e-15
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 67/239 (28%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
              L++  + LT +   P      +          L +  NN    +P        L +L
Sbjct: 42  NAVLNVGESGLTTL---PDCLPAHI--------TTLVIPDNNLT-SLPALP---PELRTL 86

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
            ++GN+L   LP        L + +     +         +   L  L +  N+      
Sbjct: 87  EVSGNQLTS-LPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQL----- 133

Query: 129 ENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-SSNY 185
              T +P   P L+ + +S N+                    ++      +  L   +N 
Sbjct: 134 ---TSLPVLPPGLQELSVSDNQLA------------------SLPALPSELCKLWAYNNQ 172

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
             S+ +   G        L     + +S N+    +P +  +   L  L   +N LT L
Sbjct: 173 LTSLPMLPSG--------LQ---ELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.6 bits (178), Expect = 3e-14
 Identities = 47/247 (19%), Positives = 81/247 (32%), Gaps = 64/247 (25%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH--------KVLDMRMNNFNGKIPRKF 59
           L         L  +    P+ + +L    N LT         + L +  N     +P   
Sbjct: 106 LSIFSNPLTHLPAL----PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALP 160

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
                L  L    N+L   LP        L+ L+V +NQ+    P    +  EL  L   
Sbjct: 161 ---SELCKLWAYNNQLTS-LPMLPSG---LQELSVSDNQLAS-LP---TLPSELYKLWAY 209

Query: 120 SNRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178
           +NR        T++   P  L+ + +S N  T                  ++ V    + 
Sbjct: 210 NNRL-------TSLPALPSGLKELIVSGNRLT------------------SLPVLPSELK 244

Query: 179 PLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
            L  S N   S+ +   G        L    ++ +  N+    +PE +  L+    +N+ 
Sbjct: 245 ELMVSGNRLTSLPMLPSG--------LL---SLSVYRNQLTR-LPESLIHLSSETTVNLE 292

Query: 238 HNNLTGL 244
            N L+  
Sbjct: 293 GNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 34/160 (21%), Positives = 53/160 (33%), Gaps = 35/160 (21%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH--------KVLDMRMNNFNGKI 55
             + L  L   NN LT++    P+ + +L+   N L            L    N     +
Sbjct: 159 LPSELCKLWAYNNQLTSLPML-PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SL 216

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
           P        L  L ++GNRL   LP        L+ L V  N++    P        L  
Sbjct: 217 PALP---SGLKELIVSGNRLTS-LPVLPSE---LKELMVSGNRLTS-LPML---PSGLLS 265

Query: 116 LILRSNRFWGPIGENTTIVP-----FPSLRIIDLSHNEFT 150
           L +  N+         T +P       S   ++L  N  +
Sbjct: 266 LSVYRNQL--------TRLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 28/156 (17%)

Query: 6   IATLYYLDLSNNFLTNIEYFP--PTNMTQLNFDSN-LTH--------KVLDMRMNNFNGK 54
            + L  L +S+N L ++   P  P+ + +L   +N LT         K L +   N    
Sbjct: 180 PSGLQELSVSDNQLASL---PTLPSELYKLWAYNNRLTSLPALPSGLKELIVS-GNRLTS 235

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           +P        L  L ++GNRL   LP        L  L+V  NQ+    P  L  L    
Sbjct: 236 LPVLP---SELKELMVSGNRLTS-LPMLPSG---LLSLSVYRNQLTR-LPESLIHLSSET 287

Query: 115 VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150
            + L  N       +         +           
Sbjct: 288 TVNLEGNPLSERTLQALR-----EITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 16/169 (9%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH--------KVLDMRMNNFNGKI 55
             + LY L   NN LT++   P + + +L    N LT         K L +   N    +
Sbjct: 199 LPSELYKLWAYNNRLTSLPALP-SGLKELIVSGNRLTSLPVLPSELKELMVS-GNRLTSL 256

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
           P        L SL++  N+L   LP SL++      +N+  N +++     L  +     
Sbjct: 257 PMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

Query: 116 LILRSNRF-WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
                 RF                     L                F  
Sbjct: 313 YSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 47/186 (25%)

Query: 73  NRLEGPLPPSLVNCH--HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGEN 130
           +R    +   +  C      VLNVG + +    P+   +   +  L++  N         
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLTT-LPD--CLPAHITTLVIPDNNL------- 73

Query: 131 TTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL----NSSN 184
            T +P   P LR +++S N+ T                  ++ V    +  L    N   
Sbjct: 74  -TSLPALPPELRTLEVSGNQLT------------------SLPVLPPGLLELSIFSNPLT 114

Query: 185 YYESIILTIKGIDIKMERILTIFMTI------DLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           +  ++   +  + I   ++ ++ +         +S N+    +P +  +   L  L   +
Sbjct: 115 HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYN 170

Query: 239 NNLTGL 244
           N LT L
Sbjct: 171 NQLTSL 176

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 11/146 (7%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L  L LS+N L+       ++          T  K LD+  N     +   F+    L  
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSD-------FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105

Query: 68  LNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           L+   + L+     S+ ++  +L  L++ +      F      L  L+VL +  N F   
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGV 152
              +       +L  +DLS  +   +
Sbjct: 166 FLPD-IFTELRNLTFLDLSQCQLEQL 190

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC-NLTS 67
           L YLD+S+             ++ L        +VL M  N+F             NLT 
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSL--------EVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L+L+  +LE   P +  +   L+VLN+ +N          + L  LQVL    N      
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-S 238

Query: 128 GENTTIVPFPSLRIIDLSHN 147
            +        SL  ++L+ N
Sbjct: 239 KKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 15/152 (9%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK--FVK 61
            G  +L YLDLS N +  +     +N   L     L H  LD + +N   ++     F+ 
Sbjct: 75  FGTTSLKYLDLSFNGVITM----SSNFLGL---EQLEH--LDFQHSNLK-QMSEFSVFLS 124

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF-PNWLEILPELQVLILRS 120
             NL  L+++                 LEVL +  N   +NF P+    L  L  L L  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
            +        T      SL+++++SHN F  +
Sbjct: 185 CQLEQL--SPTAFNSLSSLQVLNMSHNNFFSL 214

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 36/248 (14%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
           +  ++  LT++    PT        S+ T   L++  N         F K   LT L+L+
Sbjct: 12  IRCNSKGLTSV----PTG-----IPSSATR--LELESNKLQSLPHGVFDKLTQLTKLSLS 60

Query: 72  GNRLE--GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGE 129
            N L   G    S      L+ L++  N +     +    L +L+ L  + +     + E
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSE 118

Query: 130 NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNI--SVEVDYMTPLN-- 181
            +  +   +L  +D+SH     V   G  +   ++    M GN+   +   D  T L   
Sbjct: 119 FSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 182 -----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236
                S          ++ +       L+    +++S N F          LN L+ L+ 
Sbjct: 178 TFLDLSQCQ-------LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 237 SHNNLTGL 244
           S N++   
Sbjct: 231 SLNHIMTS 238

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 74.2 bits (182), Expect = 8e-15
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH-------KVLDMRMNNFNGKIPRKFV 60
           L  L LS+N LT+++     ++   N   N L+        + LD   N+ N  +     
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV- 230

Query: 61  KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
            +  LT L L  N L       L+N   L  +++  N++     +    +  L+ L + +
Sbjct: 231 -NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 121 NRFWGPIGE-NTTIVPFPSLRIIDLSHNEFTGV 152
           NR    +   N    P P+L+++DLSHN    V
Sbjct: 288 NR----LVALNLYGQPIPTLKVLDLSHNHLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 54/243 (22%), Positives = 90/243 (37%), Gaps = 33/243 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           +  L+L++  +  I+ +       +        + L M  N      P  F     LT L
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTI--------QKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 69  NLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
            L  N L   LP  +  N   L  L++ NN +     +  +    LQ L L SNR     
Sbjct: 129 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL---- 183

Query: 128 GENTTIVP---FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN 184
               T V     PSL   ++S+N  + + +   ++        N+I+V       +    
Sbjct: 184 ----THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD--ASHNSINV-------VRGPV 230

Query: 185 YYESIILTIKG---IDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
             E  IL ++     D          + +DLS N+ +  +     K+  L+ L IS+N L
Sbjct: 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 242 TGL 244
             L
Sbjct: 291 VAL 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 22/171 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L L +N LT+  +    N   L          +D+  N     +   FVK   L  L
Sbjct: 234 LTILKLQHNNLTDTAWL--LNYPGL--------VEVDLSYNELEKIMYHPFVKMQRLERL 283

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
            ++ NRL   L         L+VL++ +N +             L+ L L  N       
Sbjct: 284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI----- 336

Query: 129 ENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDN-FKAMMHGNNISVEVDY 176
              T+      +L+ + LSHN++    L     N  +  +   +   ++DY
Sbjct: 337 --VTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY 385

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 53/240 (22%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L +SNN L  IE       T L        + L +  N     +    +   +L   
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSL--------QNLQLSSNRLT-HVDLSLIP--SLFHA 197

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           N++ N L      +L     +E L+  +N IN        +  EL +L L+ N     + 
Sbjct: 198 NVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNN----LT 245

Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSSN 184
           +   ++ +P L  +DLS+NE    ++       + +    +  N +     Y  P+ +  
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-- 302

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
                              L     +DLS N     +     + + L+ L + HN++  L
Sbjct: 303 -------------------LK---VLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 37/243 (15%), Positives = 74/243 (30%), Gaps = 33/243 (13%)

Query: 14  LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73
              N        P       N   +     + + M   +     + +   N   +    +
Sbjct: 5   QRYNVKPRQ---PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61

Query: 74  RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI 133
            +       L +   +E+LN+ + QI +           +Q L +  N            
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVF 119

Query: 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNI-SVEVDYMTPLN------- 181
              P L ++ L  N+ +  L  G   N   +    M  NN+  +E D             
Sbjct: 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
           SSN        +  +D+ +   L      ++S N         +     ++ L+ SHN++
Sbjct: 179 SSN-------RLTHVDLSLIPSLF---HANVSYNLLS-----TLAIPIAVEELDASHNSI 223

Query: 242 TGL 244
             +
Sbjct: 224 NVV 226

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 42/243 (17%), Positives = 72/243 (29%), Gaps = 40/243 (16%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
                LDL  N +  +      +   L        + L++  N     +    F    NL
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHL--------EELELNENIV-SAVEPGAFNNLFNL 82

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L L  NRL+           +L  L++  N+I        + L  L+ L +  N    
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-V 141

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA----MMHGNNISVEVDYMTPLN 181
            I          SL  + L     T  + T  L +        +   NI+          
Sbjct: 142 YISHR-AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINA--------- 190

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
                         I     + L     +++S   +   +         L  L+I+H NL
Sbjct: 191 --------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 242 TGL 244
           T +
Sbjct: 237 TAV 239

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 9e-14
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L L +  +  I  +    + +L        KVL++    +   +    +   NLTSL
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRL--------KVLEISHWPYLDTMTPNCLYGLNLTSL 229

Query: 69  NLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           ++    L   +P  ++ +  +L  LN+  N I+    + L  L  LQ + L   +     
Sbjct: 230 SITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL---- 284

Query: 128 GENTTIVP-----FPSLRIIDLSHNEFT 150
                + P        LR++++S N+ T
Sbjct: 285 ---AVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 43/248 (17%), Positives = 75/248 (30%), Gaps = 46/248 (18%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  L  L L +N L  I     T ++ L          LD+  N     +   F    N
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNL--------TKLDISENKIVILLDYMFQDLYN 129

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
           L SL +  N L      +    + LE L +    +       L  L  L VL LR     
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI- 188

Query: 125 GPIGENTTIVP-----FPSLRIIDLSHNEFTGVLLTGYLDNFKA---MMHGNNISVEVDY 176
                   I          L+++++SH  +   +    L         +   N++  V Y
Sbjct: 189 ------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241

Query: 177 MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236
           +   +         L                  ++LS N        ++ +L  L+ + +
Sbjct: 242 LAVRHLVY------LR----------------FLNLSYNPISTIEGSMLHELLRLQEIQL 279

Query: 237 SHNNLTGL 244
               L  +
Sbjct: 280 VGGQLAVV 287

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 51/247 (20%), Positives = 90/247 (36%), Gaps = 29/247 (11%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
                LDL NN +T I+     N+  L          L +  N  +   P  F     L 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKISKISPGAFAPLVKLE 103

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L L+ N+L+  LP  +     L+ L V  N+I     +    L ++ V+ L +N     
Sbjct: 104 RLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGV---LLTG--YLDNFKAMMHGNNI-SVEVDYMTPL 180
             EN        L  I ++    T +   L      L      + GN I  V+   +  L
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH-----LDGNKITKVDAASLKGL 215

Query: 181 NSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
           N+      + L+   I  +D            + L++NK    +P  +     ++ + + 
Sbjct: 216 NN---LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH 271

Query: 238 HNNLTGL 244
           +NN++ +
Sbjct: 272 NNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 31/158 (19%), Positives = 64/158 (40%), Gaps = 20/158 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN------------LTH-KVLDMRMNNFNGKI 55
           L Y+ +++  +T I    P ++T+L+ D N            L +   L +  N+ +   
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI----NDNF--PNWLEI 109
                 + +L  L+LN N+L   +P  L +  +++V+ + NN I    +++F  P +   
Sbjct: 233 NGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147
                 + L SN       + +T         + L + 
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 24/164 (14%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPP------TNMTQLNFDSN-LTH---------KVLDMRM 48
           G+  +  ++L  N L +              ++ +      +T            L +  
Sbjct: 143 GLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 201

Query: 49  NNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL 107
           N    K+         NL  L L+ N +      SL N  HL  L++ NN++    P  L
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGL 259

Query: 108 EILPELQVLILRSNRF----WGPIGENTTIVPFPSLRIIDLSHN 147
                +QV+ L +N                    S   + L  N
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 17/122 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L LS N ++ ++     N   L        + L +  N    K+P        +  +
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHL--------RELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 69  NLNGNRLEG------PLPPSLVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRS 120
            L+ N +          P           +++ +N +      P+    +     + L +
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 121 NR 122
            +
Sbjct: 329 YK 330

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.9 bits (176), Expect = 4e-14
 Identities = 45/246 (18%), Positives = 78/246 (31%), Gaps = 71/246 (28%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH--------KVLDMRMNNFNGKIPRKF 59
              L L+   L+++    P  +T L    N L          + LD   N  +  +P   
Sbjct: 61  FSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLS-TLPELP 119

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
               +L  L+++ N+L   LP        LE +N  NNQ+    P   E+   L+VL +R
Sbjct: 120 ---ASLKHLDVDNNQLTM-LPELPAL---LEYINADNNQLT-MLP---ELPTSLEVLSVR 168

Query: 120 SNRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178
           +N+        T +   P SL  +D+S N                     ++        
Sbjct: 169 NNQL-------TFLPELPESLEALDVSTNLLE------------------SLPAVPVRNH 203

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
               +  +                            N+    IPE +  L+    + +  
Sbjct: 204 HSEETEIF-----------------------FRCRENRITH-IPENILSLDPTCTIILED 239

Query: 239 NNLTGL 244
           N L+  
Sbjct: 240 NPLSSR 245

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 8e-12
 Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 22/122 (18%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
            A L Y++  NN LT +    P   T L        +VL +R N     +P       +L
Sbjct: 139 PALLEYINADNNQLTML----PELPTSL--------EVLSVRNNQLT-FLPELPE---SL 182

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLE----VLNVGNNQINDNFPNWLEILPELQVLILRSN 121
            +L+++ N LE  LP   V  HH E          N+I    P  +  L     +IL  N
Sbjct: 183 EALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDN 240

Query: 122 RF 123
             
Sbjct: 241 PL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 38/164 (23%)

Query: 6   IATLYYLDLSNNFLTNIEYFP--PTNMTQLNFDSN-LTH--------KVLDMRMNNFNGK 54
            A+L YLD  +N L+ +   P  P ++  L+ D+N LT         + ++   N     
Sbjct: 99  PASLEYLDACDNRLSTL---PELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-M 154

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN---DNFPNWLEILP 111
           +P       +L  L++  N+L   LP    +   LE L+V  N +               
Sbjct: 155 LPELP---TSLEVLSVRNNQLTF-LPELPES---LEALDVSTNLLESLPAVPVRNHHSEE 207

Query: 112 ELQVLILRSNRFWGPIGENTTIVPF-----PSLRIIDLSHNEFT 150
                  R NR         T +P           I L  N  +
Sbjct: 208 TEIFFRCRENRI--------THIPENILSLDPTCTIILEDNPLS 243

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 22/160 (13%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN------------LTH-KVLDMRMNNFNGK 54
            L YL +S   LT I    P  + +L+ D N             +    L +  N     
Sbjct: 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-M 231

Query: 55  IPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI----NDNFP--NWL 107
           I          L  L+L+ N+L   +P  L +   L+V+ +  N I     ++F    + 
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147
                   + L +N       +  T         I   + 
Sbjct: 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 49/252 (19%), Positives = 89/252 (35%), Gaps = 40/252 (15%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
                LDL NN ++ +       +  L          L +  N  + KI  K F     L
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHL--------YALVLVNNKIS-KIHEKAFSPLRKL 104

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             L ++ N L   +PP+L     L  L + +N+I          L  +  + +  N    
Sbjct: 105 QKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL-- 159

Query: 126 PIGENTTIVPF----PSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS-VEVDYMTP 179
              EN+   P       L  + +S  + TG+      +    + +  N I  +E++ +  
Sbjct: 160 ---ENSGFEPGAFDGLKLNYLRISEAKLTGI-PKDLPETLNELHLDHNKIQAIELEDLLR 215

Query: 180 LN-------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232
            +         N        I+ I+      L     + L +NK    +P  +  L LL+
Sbjct: 216 YSKLYRLGLGHN-------QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267

Query: 233 GLNISHNNLTGL 244
            + +  NN+T +
Sbjct: 268 VVYLHTNNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 5   GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
            + TL  L L NN L+ +         +  +   +N   KV    +N+F        VK 
Sbjct: 239 FLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV---GVNDFCP--VGFGVKR 293

Query: 63  CNLTSLNLNGNRLE-GPLPPSLVNC-HHLEVLNVGNNQ 98
                ++L  N +    + P+   C      +  GN +
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 52/276 (18%), Positives = 104/276 (37%), Gaps = 52/276 (18%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTH-KVLDMRM 48
           + D      + L+L+N  L+++   PP ++  L    N           L    V +  +
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPP-HLESLVASCNSLTELPELPQSLKSLLVDNNNL 123

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
              +   P        L  L ++ N+LE    P L N   L++++V NN +    P+   
Sbjct: 124 KALSDLPP-------LLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKK-LPDL-- 171

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHG 167
             P L+ +   +N+    + E   +   P L  I   +N      L     + +++    
Sbjct: 172 -PPSLEFIAAGNNQ----LEELPELQNLPFLTAIYADNNSLKK--LPDLPLSLESIVAGN 224

Query: 168 NNISV--EVDYMTPLN----SSNYYESI---ILTIKGIDIKMERILTIFMTI------DL 212
           N +    E+  +  L      +N  +++     +++ ++++   +  +          D+
Sbjct: 225 NILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284

Query: 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFP 248
           S N F  G+ E+      L  LN S N +  LC  P
Sbjct: 285 SENIFS-GLSELPPN---LYYLNASSNEIRSLCDLP 316

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 56/254 (22%), Positives = 87/254 (34%), Gaps = 54/254 (21%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH----------KVLDMRMNNFNGKIPR 57
           L  +D+ NN L  +   PP ++  +   +N L              +    N+   K+P 
Sbjct: 155 LKIIDVDNNSLKKLPDLPP-SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPD 212

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117
                 +L S+    N LE    P L N   L  +   NN +    P+     P L+ L 
Sbjct: 213 LP---LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALN 263

Query: 118 LRSNRFWGPIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEV 174
           +R N          T +P    SL  +D+S N F+G  L+    N   +    N I    
Sbjct: 264 VRDNYL--------TDLPELPQSLTFLDVSENIFSG--LSELPPNLYYLNASSNEIRSLC 313

Query: 175 DYMTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230
           D    L     S+N    +              L     +  S N     +PE+      
Sbjct: 314 DLPPSLEELNVSNNKLIELPALPPR--------LE---RLIASFNHLA-EVPELPQN--- 358

Query: 231 LKGLNISHNNLTGL 244
           LK L++ +N L   
Sbjct: 359 LKQLHVEYNPLREF 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 42/269 (15%), Positives = 93/269 (34%), Gaps = 53/269 (19%)

Query: 5   GIATLYYLDLSNNFLTNIEYFP-PTNMTQLNFDSN-LTH--------KVLDMRMNNFNGK 54
              +L  +   NN L  +        +T +  D+N L          + L++R N     
Sbjct: 213 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLT-D 271

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           +P       +LT L+++ N   G L     N   L  LN  +N+I     +  ++ P L+
Sbjct: 272 LPELP---QSLTFLDVSENIFSG-LSELPPN---LYYLNASSNEIR----SLCDLPPSLE 320

Query: 115 VLILRSNRFWGPIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS 171
            L + +N+           +P   P L  +  S N      +     N K + +  N + 
Sbjct: 321 ELNVSNNKL--------IELPALPPRLERLIASFNHLAE--VPELPQNLKQLHVEYNPLR 370

Query: 172 V---EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
                 + +  L  +++   +    +         L     + + +N  +   P++   +
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQN--------LK---QLHVETNPLRE-FPDIPESV 418

Query: 229 NLLKGLNISHNNLTGLCGFPLLESCNIDE 257
              + L ++   +     F    +  +++
Sbjct: 419 ---EDLRMNSERVVDPYEFAHETTDKLED 444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------LTHKVLDMRMNNFNGKIPRK 58
              L  L  S N L  +   P  N+ QL+ + N       +   V D+RMN+   ++P  
Sbjct: 336 PPRLERLIASFNHLAEVPELP-QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394

Query: 59  FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118
                NL  L++  N L    P        +E L + + ++ D +    E   +L+  + 
Sbjct: 395 P---QNLKQLHVETNPLRE-FPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 119 RSNR 122
             + 
Sbjct: 448 EHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 38/246 (15%), Positives = 75/246 (30%), Gaps = 62/246 (25%)

Query: 24  YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83
           +  P N+      SN   +      +N   ++P +     + T      +  E   PP  
Sbjct: 2   FINPRNV------SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGN 54

Query: 84  VN-------------CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGEN 130
                                L + N  ++   P   E+ P L+ L+   N         
Sbjct: 55  GEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP---ELPPHLESLVASCNSL------- 103

Query: 131 TTIVPFP----SLRIIDLSHNEFTGVL--LTGYLDNFKAMMHGNNISV--EVDYMTPLN- 181
           T +   P    SL + + +    + +   L  YL      +  N +    E+   + L  
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALSDLPPLLE-YLG-----VSNNQLEKLPELQNSSFLKI 157

Query: 182 ---SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
               +N  + +      +             I   +N+ +  +PE +  L  L  +   +
Sbjct: 158 IDVDNNSLKKLPDLPPSL-----------EFIAAGNNQLE-ELPE-LQNLPFLTAIYADN 204

Query: 239 NNLTGL 244
           N+L  L
Sbjct: 205 NSLKKL 210

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 13/103 (12%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH--------KVLDMRMNNFNGKIPR 57
              L  L +  N L      P  ++  L  +S+L          K L +  N    + P 
Sbjct: 356 PQNLKQLHVEYNPLREFPDIP-ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPD 413

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
                 ++  L +N  R+  P   +      LE     ++  +
Sbjct: 414 IP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.5 bits (160), Expect = 4e-12
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 27/253 (10%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
             +  LDLSNN +T I          L        + L +  N  N      F    +L 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNL--------QALVLTSNGINTIEEDSFSSLGSLE 103

Query: 67  SLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPN-WLEILPELQVLILRSNRFW 124
            L+L+ N L   L  S       L  LN+  N             L +LQ+L + +   +
Sbjct: 104 HLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISV----EVDY 176
             I           L  +++  ++         L + + +    +H     +     VD 
Sbjct: 163 TKIQRK-DFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 177 MTPLN----SSNYYESIILT-IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231
            + +          ++   + +   +         F  + ++       + +++ +++ L
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGL 279

Query: 232 KGLNISHNNLTGL 244
             L  S N L  +
Sbjct: 280 LELEFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 33/158 (20%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSC 63
           G+  L  L++  + L + E     ++  +          L + M      +       + 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNV--------SHLILHMKQHI-LLLEIFVDVTS 222

Query: 64  NLTSLNLNGNRLEGP----LPP----SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
           ++  L L    L+      L      SL+       + + +  +       L  +  L  
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLE 281

Query: 116 LILRSNRFWGPIGENTTIVP------FPSLRIIDLSHN 147
           L    N+           VP        SL+ I L  N
Sbjct: 282 LEFSRNQL--------KSVPDGIFDRLTSLQKIWLHTN 311

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.7 bits (160), Expect = 5e-12
 Identities = 45/241 (18%), Positives = 81/241 (33%), Gaps = 33/241 (13%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           T++Y  +SN  L     F   + +  +  +     +  +  + F       +    N+  
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKAL---SIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
            N   +                  L+  NN + D        L EL+ LIL+ N+     
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSS 183
                     SL+ +D+S N  +     G     K++    M  N ++  +    P    
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR-- 422

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                  + +                +DL SNK +  IP+ V KL  L+ LN++ N L  
Sbjct: 423 -------IKV----------------LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458

Query: 244 L 244
           +
Sbjct: 459 V 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 40/263 (15%), Positives = 85/263 (32%), Gaps = 32/263 (12%)

Query: 7   ATLYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSN------------LTH-KVLDMRMNN 50
                L++S N+++ +        + +  L    N                + LD+  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 51  FNGKIPRKFVKSCNLTSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI 109
                    V   NL  L+L+ N  +  P+     N   L+ L +    +  +    +  
Sbjct: 81  LVKISCHPTV---NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 110 LPELQVLILRSNRFWGPI-GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168
           L   +VL++    +      E        SL I+  ++ EF  +L          +    
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL---------DVSVKT 188

Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
             ++E+  +  +   N     +  +  +    +        I+ + N F   I ++V   
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHT 247

Query: 229 NLLKGLNISHNNLTGLCGFPLLE 251
            +    +IS+  L G   F   +
Sbjct: 248 TVWY-FSISNVKLQGQLDFRDFD 269

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 40/236 (16%), Positives = 71/236 (30%), Gaps = 15/236 (6%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L YLDLS+N L  I   P  N+  L+   N    +           I ++F     L  L
Sbjct: 71  LEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDAL----------PICKEFGNMSQLKFL 120

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
            L+   LE      + + +  +VL V             E L +     L          
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGE--TYGEKEDPEGLQDFNTESLHIVFP--TNK 176

Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYES 188
           E   I+      + +L  +    VL       F +++     + ++  +T  N    + S
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 189 IILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
            I  ++ +        +I   + L               L  L    +  +     
Sbjct: 237 FIRILQLVWHTTVWYFSIS-NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 36/246 (14%), Positives = 80/246 (32%), Gaps = 32/246 (13%)

Query: 10  YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69
           + +D S N L ++    P +++        T  +L++  N  +       +    L  L 
Sbjct: 3   FLVDRSKNGLIHV----PKDLS-----QKTT--ILNISQNYISELWTSDILSLSKLRILI 51

Query: 70  LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGE 129
           ++ NR++            LE L++ +N++     +       L+ L L  N F   +  
Sbjct: 52  ISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAF-DALPI 107

Query: 130 NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESI 189
                    L+ + LS              +   + H N   V +     L  +   +  
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLV----LGETYGEKED 156

Query: 190 ILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPL 249
              ++  + +   I+        ++ +F   +   V  +  L+  NI        C + L
Sbjct: 157 PEGLQDFNTESLHIV------FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 250 LESCNI 255
                +
Sbjct: 211 SILAKL 216

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 7e-12
 Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 31/238 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC-NLT 66
           +  L L+ N LT+I+      N+  L  D N   K+ D+             +K    L 
Sbjct: 67  VTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN---KIKDL-----------SSLKDLKKLK 112

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           SL+L  N +   +   LV+   LE L +GNN+I D     L  L +L  L L  N+    
Sbjct: 113 SLSLEHNGISD-ING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ---- 164

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNY 185
           I +   +     L+ + LS N  + +     L N   + +       +            
Sbjct: 165 ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINH------QS 218

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
              +  T+K  D  +     I    D      +  +PE   +++ +    ++      
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 30/247 (12%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK 61
           D   A     +L    +T+        ++ Q+  +++    V              + ++
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--------------QGIQ 62

Query: 62  SC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
              N+T L LNGN+L   + P L N  +L  L +  N+I D     L+ L +L+ L L  
Sbjct: 63  YLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEH 118

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTP 179
           N     I +   +V  P L  + L +N+ T + +   L     + +  N IS     + P
Sbjct: 119 NG----ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS----DIVP 170

Query: 180 LNSSNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           L      +++ L+   I D++    L     ++L S +           L +   +  + 
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 239 NNLTGLC 245
            +L    
Sbjct: 231 GSLVTPE 237

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 37/224 (16%), Positives = 82/224 (36%), Gaps = 29/224 (12%)

Query: 27  PTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85
            T + Q+  D         +++  +    + +  +   ++  +  N + ++  +   +  
Sbjct: 8   STPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKS-VQG-IQY 63

Query: 86  CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS 145
             ++  L +  N++ D  P  L  L  L  L L  N+    I + +++     L+ + L 
Sbjct: 64  LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLE 117

Query: 146 HNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSSNYYESIILTIKGI-DIKM 200
           HN  + +     L +   +    +  N I+     +T L+     +++ L    I DI  
Sbjct: 118 HNGISDI---NGLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQISDIVP 170

Query: 201 ERILTIFMTIDLSSNKFQGGIPEV--VGKLNLLKGLNISHNNLT 242
              LT    + LS N     I ++  +  L  L  L +      
Sbjct: 171 LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECL 210

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 30/174 (17%)

Query: 6   IATLYYLDLSNNF---LTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
           + +L Y+ L+N     LT IEY    N+  L  ++       +              +  
Sbjct: 43  MNSLTYITLANINVTDLTGIEYA--HNIKDLTINNI---HATNY-----------NPISG 86

Query: 63  C-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
             NL  L + G  +     P+L     L +L++ ++  +D+    +  LP++  + L  N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS 171
                I +   +   P L+ +++  +          +++F  +         I 
Sbjct: 147 GA---ITDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC-NLTS 67
           L  LD+S++   +        + ++          +D+  N     I    +K+   L S
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKV--------NSIDLSYNGAITDI--MPLKTLPELKS 163

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
           LN+  + +       + +   L  L   +  I  
Sbjct: 164 LNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 57/187 (30%)

Query: 64  NLTSLNLNGNR---LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
           +LT + L       L G     +   H+++ L + N    +  P  +  L  L+ L +  
Sbjct: 45  SLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL 180
                    N  +    SL ++D+SH+     +LT                        +
Sbjct: 98  KDVTSDKIPN--LSGLTSLTLLDISHSAHDDSILT-----------------------KI 132

Query: 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
           N+                     L    +IDLS N     I   +  L  LK LNI  + 
Sbjct: 133 NT---------------------LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG 170

Query: 241 LTGLCGF 247
           +    G 
Sbjct: 171 VHDYRGI 177

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 21/164 (12%)

Query: 7   ATLYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSN------------LTH-KVLDMRMNN 50
           A    + L  N ++++    F    N+T L   SN            L   + LD+  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 51  FNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLE 108
               +    F     L +L+L+   L+  L P        L+ L + +N +     +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
            L  L  L L  NR    + E        SL  + L  N    V
Sbjct: 151 DLGNLTHLFLHGNRISS-VPER-AFRGLHSLDRLLLHQNRVAHV 192

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 35/168 (20%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPP------TNMTQLNFDSN-LTH------------KVLD 45
           G+A L  LDLS+N    +    P        +  L+ D   L              + L 
Sbjct: 78  GLALLEQLDLSDN--AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 46  MRMNNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP 104
           ++ N     +P   F    NLT L L+GNR+      +    H L+ L +  N++    P
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 105 NWLEILPELQVLILRSNRFWGPIGENTTI-----VPFPSLRIIDLSHN 147
           +    L  L  L L +N         + +      P  +L+ + L+ N
Sbjct: 195 HAFRDLGRLMTLYLFANNL-------SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 45/244 (18%), Positives = 67/244 (27%), Gaps = 54/244 (22%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
                  L  +    P         +      + +  N  +      F    NLT L L+
Sbjct: 16  TSCPQQGLQAV----PVG-----IPAASQR--IFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNN-QINDNFPNWLEILPELQVLILRSNRFWGPIGEN 130
            N L      +      LE L++ +N Q+    P     L  L  L L            
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL------- 117

Query: 131 TTIVP-----FPSLRIIDLSHNEFTGVLLTGYLDNFKA----MMHGNNI-SVEVDYMTPL 180
             + P       +L+ + L  N     L      +        +HGN I SV       L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
           +S        L                  + L  N+     P     L  L  L +  NN
Sbjct: 177 HS--------LD----------------RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 241 LTGL 244
           L+ L
Sbjct: 213 LSAL 216

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 5   GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTH-KVLDMRM 48
           G+A L  L+L +N LT I        + + +L   +N            +   + LD+  
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 49  NNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL 107
                 I    F    NL  LNL    L     P+L     L+ L++  N ++   P   
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150
           + L  LQ L +  ++    I  N       SL  I+L+HN  T
Sbjct: 228 QGLMHLQKLWMIQSQIQV-IERN-AFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 21/242 (8%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
                L+L  N +  I+     ++  L        ++L +  N+    I    F    NL
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHL--------EILQLSRNHIR-TIEIGAFNGLANL 114

Query: 66  TSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
            +L L  NRL   +P  + V    L+ L + NN I          +P L+ L L   +  
Sbjct: 115 NTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNI-SVEVDYMTPLNS 182
             I E        +LR ++L+      +     L     + + GN++ ++       L  
Sbjct: 174 SYISEGA-FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 183 SNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
               + + +    I+ I+      L   + I+L+ N       ++   L+ L+ +++ HN
Sbjct: 233 L---QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

Query: 240 NL 241
             
Sbjct: 290 PW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 37/246 (15%), Positives = 66/246 (26%), Gaps = 90/246 (36%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
           +      L  +   P          +N    +L++  N         F    +L  L L+
Sbjct: 48  VICVRKNLREV---PD------GISTNTR--LLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
            N +      +     +L  L + +N++          L +L+ L LR+N          
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-------E 149

Query: 132 TIVPF-----PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
           +I  +     PSLR +DL                         +S               
Sbjct: 150 SIPSYAFNRIPSLRRLDLG--------------------ELKRLSY-------------- 175

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG 246
                                    +S   F+G        L+ L+ LN++  NL  +  
Sbjct: 176 -------------------------ISEGAFEG--------LSNLRYLNLAMCNLREIPN 202

Query: 247 FPLLES 252
              L  
Sbjct: 203 LTPLIK 208

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 46/223 (20%), Positives = 77/223 (34%), Gaps = 43/223 (19%)

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           +P     S N   LNL+ N+++     S  +  HLE+L +  N I          L  L 
Sbjct: 58  VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115

Query: 115 VLILRSNRFWGPIG--ENTTIVPFPSLRIIDLSHNEFTGV----------LLTGYLDN-- 160
            L L  NR    +    N   V    L+ + L +N    +          L    L    
Sbjct: 116 TLELFDNR----LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 161 ---------FKAM-------MHGNNISVEVDYMTPLNSSNYYESIILT---IKGIDIKME 201
                    F+ +       +   N+  E+  +TPL      + + L+   +  I     
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIK---LDELDLSGNHLSAIRPGSF 227

Query: 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
           + L     + +  ++ Q         L  L  +N++HNNLT L
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 46/251 (18%), Positives = 85/251 (33%), Gaps = 39/251 (15%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
           +   YL+L  N +  I+     ++  L        +VL +  N+   +I    F    +L
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHL--------EVLQLGRNSIR-QIEVGAFNGLASL 125

Query: 66  TSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
            +L L  N L   +P  +      L  L + NN I          +P L  L L   +  
Sbjct: 126 NTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184

Query: 125 GPIGENTTIVPF---PSLRIIDLSHNEFTGVLLTGYLDNFKAM-------MHGNNI-SVE 173
             I E      F    +L+ ++L             + N   +       M GN+   + 
Sbjct: 185 EYISEGA----FEGLFNLKYLNLGMCNIK------DMPNLTPLVGLEELEMSGNHFPEIR 234

Query: 174 VDYMTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230
                 L+S    + + +    +  I+      L   + ++L+ N       ++   L  
Sbjct: 235 PGSFHGLSS---LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291

Query: 231 LKGLNISHNNL 241
           L  L++ HN  
Sbjct: 292 LVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 25/165 (15%)

Query: 5   GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTH-KVLDMRM 48
           G+A+L  L+L +N+LT I        + + +L   +N            +     LD+  
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 49  NNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL 107
                 I    F    NL  LNL    ++    P+L     LE L +  N   +  P   
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 108 EILPELQVLILRSNRFWGPIG--ENTTIVPFPSLRIIDLSHNEFT 150
             L  L+ L + +++    +   E        SL  ++L+HN  +
Sbjct: 239 HGLSSLKKLWVMNSQ----VSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 46/246 (18%), Positives = 81/246 (32%), Gaps = 54/246 (21%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
              +  +   L+ +   P          SN  +  L++  NN        F    +L  L
Sbjct: 56  FSKVVCTRRGLSEV---PQ------GIPSNTRY--LNLMENNIQMIQADTFRHLHHLEVL 104

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
            L  N +      +      L  L + +N +        E L +L+ L LR+N       
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI----- 159

Query: 129 ENTTI-----VPFPSLRIIDLSH-NEFTGV---LLTGYLDNFKAM-MHGNNISVEVDYMT 178
              +I        PSL  +DL    +   +      G L N K + +   NI  ++  +T
Sbjct: 160 --ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIK-DMPNLT 215

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           PL                       L     +++S N F    P     L+ LK L + +
Sbjct: 216 PLVG---------------------LE---ELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 239 NNLTGL 244
           + ++ +
Sbjct: 252 SQVSLI 257

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 32/117 (27%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  L  L++S N    I       ++                                +
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLS--------------------------------S 243

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
           L  L +  +++      +      L  LN+ +N ++    +    L  L  L L  N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.1 bits (151), Expect = 6e-11
 Identities = 47/253 (18%), Positives = 87/253 (34%), Gaps = 26/253 (10%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
           A + Y+DLS N +  +     T+ ++L    +L    L +        I    F    +L
Sbjct: 30  AHVNYVDLSLNSIAEL---NETSFSRL---QDLQF--LKVEQQTPGLVIRNNTFRGLSSL 81

Query: 66  TSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSNR 122
             L L+ N+    L         +LEVL +    ++      N+ + L  L++L+LR N 
Sbjct: 82  IILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS 182
               I   +  +      ++DL+ N+    +    L NF+   H   + +    +  +N 
Sbjct: 141 IKK-IQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGK-HFTLLRLSSITLQDMNE 197

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
                                 T   T+DLS N F+  + +     + + G  I    L+
Sbjct: 198 YWLGWEKCGNPFK--------NTSITTLDLSGNGFKESMAK--RFFDAIAGTKIQSLILS 247

Query: 243 GLCGFPLLESCNI 255
                        
Sbjct: 248 NSYNMGSSFGHTN 260

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 35/239 (14%)

Query: 27  PTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPP-SL 83
           P ++  ++   N +              ++    F +  +L  L +        +   + 
Sbjct: 29  PAHVNYVDLSLNSIA-------------ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 84  VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143
                L +L +  NQ           L  L+VL L      G +       P  SL ++ 
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 144 LSHNEFTGVLLTGYLDNFKAM----MHGNNI-SVEVDYMTPLNSSNYYESIILTIKGIDI 198
           L  N    +    +  N +      +  N + S+  + +      ++             
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT------------ 183

Query: 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLESCNIDE 257
                L+     D++             K   +  L++S N           ++    +
Sbjct: 184 --LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 32/159 (20%)

Query: 2   WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FV 60
             L  + +   DLS + +  +     ++ T L        + L +  N  N KI    F 
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDL--------EQLTLAQNEIN-KIDDNAFW 320

Query: 61  KSCNLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQI----NDNFPNWLEILPELQV 115
              +L  LNL+ N L   +      N   LEVL++  N I    + +F      LP L+ 
Sbjct: 321 GLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLG----LPNLKE 375

Query: 116 LILRSNRFWGPIGENTTI-----VPFPSLRIIDLSHNEF 149
           L L +N+         ++         SL+ I L  N +
Sbjct: 376 LALDTNQL-------KSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 27/167 (16%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
                   L LS+  L ++  +        N   N +   LD+  N F   + ++F  + 
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 64  NLT---SLNLNGNRLEGPLPP-----SLVNCH-------HLEVLNVGNNQINDNFPNWLE 108
             T   SL L+ +   G            N          ++  ++  ++I     +   
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVP-----FPSLRIIDLSHNEFT 150
              +L+ L L  N           I          L  ++LS N   
Sbjct: 297 HFTDLEQLTLAQNEI-------NKIDDNAFWGLTHLLKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 45/259 (17%), Positives = 77/259 (29%), Gaps = 55/259 (21%)

Query: 9   LYYLDLSNNFLTNIE-----YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
            + LDL+ N + +I       F   + T L   S     + DM       +      K+ 
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI---TLQDMNEYWLGWEKCGNPFKNT 212

Query: 64  NLTSLNLNGNRLEGPLPP---SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
           ++T+L+L+GN  +  +       +    ++ L + N+       N              +
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY------NMGSSFGHTNFKDPDN 266

Query: 121 NRFWGPIGENTTIV----------------PFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164
             F G                          F  L  + L+ NE    +           
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH- 324

Query: 165 MHGNNISVEVDYMTPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE 223
                       +  LN S N+       +  ID +M   L     +DLS N  +    +
Sbjct: 325 ------------LLKLNLSQNF-------LGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365

Query: 224 VVGKLNLLKGLNISHNNLT 242
               L  LK L +  N L 
Sbjct: 366 SFLGLPNLKELALDTNQLK 384

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.8 bits (150), Expect = 8e-11
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 28/150 (18%)

Query: 9   LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFN-GKIPRKFVKSCNL 65
           L  L L  N L N         NM+ L        + LD+ +N+ N     R    + ++
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSL--------ETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             LNL+ N L G +   L     ++VL++ NN+I  + P  +  L  LQ L + SN+   
Sbjct: 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQL-- 485

Query: 126 PIGENTTIVP------FPSLRIIDLSHNEF 149
                   VP        SL+ I L  N +
Sbjct: 486 ------KSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 39/242 (16%), Positives = 76/242 (31%), Gaps = 37/242 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           + YL++ N  +T          ++    S     +  ++   F       +     +   
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSL---MIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF--WGP 126
            L+ +           +      LN   N   D+       L  LQ LIL+ N    +  
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVL---LTGYLDNFKAM-MHGNNISVEVDYMTPLNS 182
           +   T      SL  +D+S N            + ++   + +  N ++  V    P   
Sbjct: 395 VALMTK--NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK- 451

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
                   + +                +DL +N+    IP+ V  L  L+ LN++ N L 
Sbjct: 452 --------VKV----------------LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

Query: 243 GL 244
            +
Sbjct: 487 SV 488

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 24/260 (9%)

Query: 2   WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPR--KF 59
            ++ +  L +L LSN  L +                     V    +        +  +F
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHH-----LEVLNVGNNQINDNFPNWLEILPELQ 114
                +  LN+    +   +              L + +V N     +      +  E+ 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 115 VLILRSNRFWGPIGENTTIVPF--PSLRIIDLSHNEFTGVLLTGY--LDNFKAMMHGNN- 169
           + +L  +           + P    S   ++ + N FT  +  G   L   + ++   N 
Sbjct: 333 IKMLSISD----TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 170 ---ISVEVDYMTPLNSSNYYESIILTI-KGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225
                        ++S    +  + ++      +        + ++LSSN   G +    
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-- 446

Query: 226 GKLNL-LKGLNISHNNLTGL 244
             L   +K L++ +N +  +
Sbjct: 447 -CLPPKVKVLDLHNNRIMSI 465

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 35/253 (13%), Positives = 76/253 (30%), Gaps = 25/253 (9%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L +L LS      ++  P  ++       +L         +        + ++  N T L
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV--------SYHIKGGETESLQIPNTTVL 199

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN-------DNFPNWLEILPELQVLILRSN 121
           +L  +          ++ + L  L + N ++N         F + L   P L  + L+  
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 122 RF-WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS-VEVDYMTP 179
              W    +         +  +++ +   T  +        +  +    I  V+      
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 180 LNSSNYYESIILTIK---GIDIKM-----ERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231
              + Y     + IK     D            + F  ++ + N F   + +    L  L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 232 KGLNISHNNLTGL 244
           + L +  N L   
Sbjct: 380 QTLILQRNGLKNF 392

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 42/254 (16%), Positives = 84/254 (33%), Gaps = 29/254 (11%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KIPRKFVKSCNLTS 67
           L YLD+S+N L NI       M       +L H  LD+  N+F+   + ++F     LT 
Sbjct: 102 LEYLDVSHNRLQNI---SCCPMA------SLRH--LDLSFNDFDVLPVCKEFGNLTKLTF 150

Query: 68  LNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           L L+  +  +  L P         +L++ +  I       L+I     + ++        
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-----MMHGNNISVEVDYMTPLN 181
           +  N ++     L++ ++  N+     L  +L           +   +I         L 
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 182 SSNYYESII-LTIKGIDIK----------MERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230
              +   +  L I  + I            E  L   M   + +  F      +      
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 231 LKGLNISHNNLTGL 244
           +    +S ++   +
Sbjct: 331 MNIKMLSISDTPFI 344

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 33/270 (12%), Positives = 76/270 (28%), Gaps = 42/270 (15%)

Query: 7   ATLYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSN------------LTH-KVLDMRMNN 50
                L LS N ++ +        + +  L    N                + LD+  N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 51  FNGKIPRKFVKSCNLTSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI 109
               I    +   +L  L+L+ N  +  P+     N   L  L +   +        +  
Sbjct: 112 L-QNISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRI-IDLSHNEFTGVLLTGYLDNFKAMMHGN 168
           L  L  ++L    +    GE  ++    +  + +    N    V +   ++    +   N
Sbjct: 169 L-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 169 NISVEVDYMTPLNSSNYYESII----LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV 224
               + +    +   +          +T++ I+   +  + +F                 
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP---------- 277

Query: 225 VGKLNLLKGLNISHNNLTGLCGFPLLESCN 254
                 ++ LNI +  +T            
Sbjct: 278 ------VEYLNIYNLTITERIDREEFTYSE 301

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 17/165 (10%)

Query: 11  YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70
            +D SN  LT++    P     L+   N   ++                     L  L L
Sbjct: 35  MVDYSNRNLTHVPKDLPPRTKALSLSQNSISELR-----------MPDISFLSELRVLRL 83

Query: 71  NGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGE 129
           + NR+   L   + +    LE L+V +N++ +        +  L+ L L  N  +  +  
Sbjct: 84  SHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQNISCCP---MASLRHLDLSFND-FDVLPV 138

Query: 130 NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV 174
                    L  + LS  +F  + L        + +  + +S  +
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 31/249 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKIP 56
           L  L+L +N +T++      T +T+L    N          L   K LD+         P
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 57  RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116
                  NL  L L+ N++   + P L    +L+ L++GN Q++D  P  L  L +L  L
Sbjct: 125 --LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS-VEV 174
               N+    I + + +   P+L  + L +N+ + V       N   + +    I+   V
Sbjct: 179 KADDNK----ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV 234

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234
            Y   L   N        +KG         TI      +S      +   +  ++     
Sbjct: 235 FYNNNLVVPN-------VVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQ 287

Query: 235 NISHNNLTG 243
           +++  N T 
Sbjct: 288 SVTFKNTTV 296

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 39/243 (16%), Positives = 86/243 (35%), Gaps = 30/243 (12%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK 61
           D  +A    +    + +T+         +T L+        +  ++  N           
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLN----------- 63

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
             NL  L L  N++       L N   +  L +  N + +     +  L  ++ L L S 
Sbjct: 64  --NLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST 117

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-MMHGNNISVEVDYMTPL 180
           +    I + T +    +L+++ L  N+ T +     L N +   +    +S     +TPL
Sbjct: 118 Q----ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS----DLTPL 169

Query: 181 NSSNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
            + +   ++      I DI     L   + + L +N+        +   + L  + +++ 
Sbjct: 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQ 227

Query: 240 NLT 242
            +T
Sbjct: 228 TIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 39/229 (17%)

Query: 26  PPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84
            PT +  +  D  L +   +    +N    + +  +    +T+L+  G  +   +   + 
Sbjct: 5   QPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTT-IEG-VQ 60

Query: 85  NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDL 144
             ++L  L + +NQI D  P  L+ L ++  L L  N     +   + I    S++ +DL
Sbjct: 61  YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDL 114

Query: 145 SHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI 203
           +  + T V     L N + + +  N I+     ++PL                       
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQITN----ISPLAG--------------------- 149

Query: 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLES 252
           LT    + + + +     P  +  L+ L  L    N ++ +     L +
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLASLPN 196

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 1e-10
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 21/138 (15%)

Query: 11  YLDLSNNFLTNIEYFPP-TNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
            L L++  LT + +      +T L+   N L               +P        L  L
Sbjct: 445 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-------------ALPPALAALRCLEVL 491

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI--LPELQVLILRSNRFWGP 126
             + N LE  +   + N   L+ L + NN++         +   P L +L L+ N     
Sbjct: 492 QASDNALEN-VDG-VANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQE 548

Query: 127 IGENTTIVP-FPSLRIID 143
            G    +    PS+  I 
Sbjct: 549 EGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 19/177 (10%)

Query: 9   LYYLDLSNNFLTNIEYFP--PTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           L  + L    L  + Y        + L     +    LD   + F  +     ++  ++ 
Sbjct: 385 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L+L    L   +   L     +  L++ +N++    P  L  L  L+VL    N     
Sbjct: 445 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL--- 498

Query: 127 IGENTTIVPF---PSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDY 176
                 +      P L+ + L +N          L +   +    + GN++  E   
Sbjct: 499 ----ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 33/249 (13%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           + ++  DL    L +        +     DS     +L  R   +     R       L 
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW----CRDSATDEQLF 352

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
              L+  +    L   L +C  L+ L   N          + ++  L  L+         
Sbjct: 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKET---- 404

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
                 +  F +L+ +D     +   L + +L     +         +     L   +  
Sbjct: 405 ------LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH----LAHKD-- 452

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG 246
              +  +  ++      L +   +DLS N+ +  +P  +  L  L+ L  S N L  + G
Sbjct: 453 ---LTVLCHLEQ-----LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDG 503

Query: 247 FPLLESCNI 255
              L     
Sbjct: 504 VANLPRLQE 512

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L + N+ L+ +       +  L     L    LD+R        P  F     L  L
Sbjct: 208 LKSLKIRNSPLSAL----GPAIHHL---PKLEE--LDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 69  NL-NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
            L + + L   LP  +     LE L++         P+ +  LP   ++++  +
Sbjct: 259 ILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 33/156 (21%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
              L+L +  L       P    +L   S+L H  + +       ++P    +   L +L
Sbjct: 83  RVALELRSVPLPQF----PDQAFRL---SHLQH--MTIDAAGLM-ELPDTMQQFAGLETL 132

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNV-GNNQI--------NDNFPNWLEILPELQVLILR 119
            L  N L   LP S+ + + L  L++    ++        + +     + L  LQ L L 
Sbjct: 133 TLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 120 SNRFWGPIGENTTIVP-----FPSLRIIDLSHNEFT 150
                         +P       +L+ + + ++  +
Sbjct: 192 WTGI--------RSLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN---------FNGKIPRKF 59
           L  L L+ N L  +    P ++  L   + L    L +R             +     + 
Sbjct: 129 LETLTLARNPLRAL----PASIASL---NRLRE--LSIRACPELTELPEPLASTDASGEH 179

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
               NL SL L    +   LP S+ N  +L+ L + N+ ++      +  LP+L+ L LR
Sbjct: 180 QGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237

Query: 120 SN 121
             
Sbjct: 238 GC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 29/214 (13%), Positives = 56/214 (26%), Gaps = 53/214 (24%)

Query: 38  NLTHKVLDMRMNNFNGKIPR--KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVG 95
           N  +  ++ R            +        +L L    L    P       HL+ + + 
Sbjct: 54  NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTID 112

Query: 96  NNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVP-----FPSLRIIDLSHNEFT 150
              +    P+ ++    L+ L L  N            +P        LR + +      
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPL--------RALPASIASLNRLRELSIRACPE- 162

Query: 151 GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTI 210
                  L      +   + S E   +  L                            ++
Sbjct: 163 -------LTELPEPLASTDASGEHQGLVNLQ---------------------------SL 188

Query: 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
            L     +  +P  +  L  LK L I ++ L+ L
Sbjct: 189 RLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 34/248 (13%), Positives = 67/248 (27%), Gaps = 51/248 (20%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
             +       ++         L   +      L++R      + P +  +  +L  + ++
Sbjct: 58  PQIETRTGRALKATAD----LLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTID 112

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN-------RFW 124
              L   LP ++     LE L +  N +    P  +  L  L+ L +R+           
Sbjct: 113 AAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGV-----LLTG--YLDNFKAMMHGNNISVEVDYM 177
                +       +L+ + L       +      L     L      +  + +S     +
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK-----IRNSPLSALGPAI 225

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
             L                       L      DL         P + G    LK L + 
Sbjct: 226 HHLPK---------------------LEEL---DLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 238 H-NNLTGL 244
             +NL  L
Sbjct: 262 DCSNLLTL 269

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 50/248 (20%), Positives = 83/248 (33%), Gaps = 34/248 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH---------KVLDMRMNNFNGKIPRK 58
           L YL+   N LT ++      +T LN   N LT            LD  +N    K+   
Sbjct: 108 LTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD-- 165

Query: 59  FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI--LPELQVL 116
                 LT+L+ + N++   L  S      L  LN   N I       L++    +L  L
Sbjct: 166 VTPQTQLTTLDCSFNKITE-LDVS--QNKLLNRLNCDTNNITK-----LDLNQNIQLTFL 217

Query: 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDY 176
              SN+          + P   L   D S N  T + ++             ++  E+D 
Sbjct: 218 DCSSNKL-----TEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL-EIDL 271

Query: 177 MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236
                   +       IK +D+     L     +D  +      +   + +   L  L +
Sbjct: 272 THNTQLIYFQAEGCRKIKELDVTHNTQLY---LLDCQAAGIT-ELD--LSQNPKLVYLYL 325

Query: 237 SHNNLTGL 244
           ++  LT L
Sbjct: 326 NNTELTEL 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 56/262 (21%), Positives = 92/262 (35%), Gaps = 56/262 (21%)

Query: 6   IATLYYLDLSNNFLTNIEYFP-PTNMTQLNFDSN---------LTH-KVLDMRMNNFNGK 54
           +ATL  LD  N+ +T++      T +T+L   SN          T+   L    N     
Sbjct: 41  LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLT-N 99

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI--LPE 112
           +         LT LN + N+L   L  S      L  LN   N + +     +++    +
Sbjct: 100 LD--VTPLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNCARNTLTE-----IDVSHNTQ 149

Query: 113 LQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG-----YLDNFKAMMHG 167
           L  L    N+          + P   L  +D S N+ T + ++       L+        
Sbjct: 150 LTELDCHLNK----KITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN-----CDT 200

Query: 168 NNI-SVEVDYMTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222
           NNI  ++++    L     SSN        +  ID+     LT     D S N     + 
Sbjct: 201 NNITKLDLNQNIQLTFLDCSSNK-------LTEIDVTPLTQLT---YFDCSVNPLT-ELD 249

Query: 223 EVVGKLNLLKGLNISHNNLTGL 244
             V  L+ L  L+    +L  +
Sbjct: 250 --VSTLSKLTTLHCIQTDLLEI 269

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 42/252 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTH-KVLDMRMNNFNGKIPR 57
           L YL+ + N LT I+    T +T+L+   N           T    LD   N    ++  
Sbjct: 129 LTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD- 186

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI--LPELQV 115
              ++  L  LN + N +       L     L  L+  +N++ +     +++  L +L  
Sbjct: 187 -VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-----IDVTPLTQLTY 237

Query: 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD 175
                N           +     L  +     +   + LT           G     E+D
Sbjct: 238 FDCSVNPL-----TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 176 YMTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232
               +  +     +      I  +D+     L     + L++ +    +   V     LK
Sbjct: 293 ----VTHNTQLYLLDCQAAGITELDLSQNPKLV---YLYLNNTELTE-LD--VSHNTKLK 342

Query: 233 GLNISHNNLTGL 244
            L+  + ++   
Sbjct: 343 SLSCVNAHIQDF 354

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 19/185 (10%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH-------KVLDMRMNNFNGKIPRKFV 60
           L Y D S N LT ++    + +T L+     L         +++  +             
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 61  KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
            +  L  L+     +   L  S      L  L + N ++ +     +    +L+ L   +
Sbjct: 295 HNTQLYLLDCQAAGIT-ELDLS--QNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVN 348

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-LTGYLDNFKAMMHGNNISVEVDYMTP 179
                 I + +++   P+L     +  +   +   T   ++    +  + +    + M  
Sbjct: 349 AH----IQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404

Query: 180 LNSSN 184
                
Sbjct: 405 EPGDG 409

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 52/269 (19%), Positives = 79/269 (29%), Gaps = 46/269 (17%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTH-KVLDMRMNNFNGKI 55
           A+             I       +T L+  ++          LT    L    NN    +
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TL 79

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
                ++ NLT L  + N+L       +     L  LN   N++     +     P L  
Sbjct: 80  D--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLDVS---QNPLLTY 131

Query: 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNI-SVE 173
           L    N           +     L  +D   N+    L          +    N I  ++
Sbjct: 132 LNCARNTL-----TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186

Query: 174 VDYMTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229
           V     LN     +N        I  +D+     LT    +D SSNK    I   V  L 
Sbjct: 187 VSQNKLLNRLNCDTNN-------ITKLDLNQNIQLT---FLDCSSNKLT-EID--VTPLT 233

Query: 230 LLKGLNISHNNLTGL--CGFPLLESCNID 256
            L   + S N LT L       L + +  
Sbjct: 234 QLTYFDCSVNPLTELDVSTLSKLTTLHCI 262

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 35/202 (17%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-----NFPNWLEIL-------- 110
           N  S       ++     S      L  L+  N+ I D          L  L        
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTG-LTKLICTSNNIT 77

Query: 111 -------PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
                    L  L   SN+       N  + P   L  ++   N+ T + ++        
Sbjct: 78  TLDLSQNTNLTYLACDSNKL-----TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYL 132

Query: 164 MMHGNNI-SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222
               N +  ++V + T L   + + +  +T   +D+  +  LT   T+D S NK    + 
Sbjct: 133 NCARNTLTEIDVSHNTQLTELDCHLNKKITK--LDVTPQTQLT---TLDCSFNKIT-ELD 186

Query: 223 EVVGKLNLLKGLNISHNNLTGL 244
             V +  LL  LN   NN+T L
Sbjct: 187 --VSQNKLLNRLNCDTNNITKL 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 28/153 (18%), Positives = 43/153 (28%), Gaps = 22/153 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           LY LD     +T ++      +  L  ++  LT   LD+  N               L S
Sbjct: 299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE--LDVSHNT-------------KLKS 343

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L+     ++     S+     L        Q         E L    + I  S       
Sbjct: 344 LSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPK---ETLTNNSLTIAVSPDLLDQF 398

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN 160
           G    I P     + D + N  T   L+     
Sbjct: 399 GNPMNIEP-GDGGVYDQATNTITWENLSTDNPA 430

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 22/150 (14%)

Query: 11  YLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTSL 68
            LDLS+N L+ +   + PT +T L+         L +  N+ N  I  + FV   NL  L
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHS--------LLLSHNHLN-FISSEAFVPVPNLRYL 93

Query: 69  NLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQI----NDNFPNWLEILPELQVLILRSNRF 123
           +L+ N L   L      +   LEVL + NN I     + F +    + +LQ L L  N+ 
Sbjct: 94  DLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFED----MAQLQKLYLSQNQI 148

Query: 124 -WGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
              P+         P L ++DLS N+   +
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 21/147 (14%)

Query: 9   LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
           L+ L LS+N L  I    F    +  L        + LD+  N+ +  +    F     L
Sbjct: 66  LHSLLLSHNHLNFISSEAF--VPVPNL--------RYLDLSSNHLH-TLDEFLFSDLQAL 114

Query: 66  TSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQI----NDNFPNWLEILPELQVLILRS 120
             L L  N +   +   +  +   L+ L +  NQI     +   +    LP+L +L L S
Sbjct: 115 EVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSS 172

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHN 147
           N+       +   +P      + L +N
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 28/243 (11%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK 61
           D   A     +L    +T+        ++ Q+  +++    V  ++              
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP----------- 68

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
             N+T L LNGN+L   + P L N  +L  L +  N++ D     L+ L +L+ L L  N
Sbjct: 69  --NVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN 122

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPL 180
                I +   +V  P L  + L +N+ T + +   L     + +  N IS     + PL
Sbjct: 123 G----ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS----DIVPL 174

Query: 181 NSSNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
                 +++ L+   I D++    L     ++L S +           L +   +  +  
Sbjct: 175 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 240 NLT 242
           +L 
Sbjct: 235 SLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 19/181 (10%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKIP 56
           L +L L  N + ++        +  L+ + N          L   + L +  N       
Sbjct: 92  LGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDI 149

Query: 57  RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116
               +   L +L+L  N++   + P L     L+ L +  N I+D     L  L  L VL
Sbjct: 150 TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVL 205

Query: 117 ILRSNRF-WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD 175
            L S      PI   + +V   +++  D S      +   G  +      H    + EV 
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 265

Query: 176 Y 176
           +
Sbjct: 266 F 266

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 37/228 (16%), Positives = 86/228 (37%), Gaps = 43/228 (18%)

Query: 24  YFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPS 82
              PT + Q+  D         +++  +    + +  +   ++  +  N + ++  +   
Sbjct: 8   ITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKS-VQG- 63

Query: 83  LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142
           +    ++  L +  N++ D  P  L  L  L  L L  N+    + + +++     L+ +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSL 117

Query: 143 DLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201
            L HN  + +    +L   +++ +  N I+     +T L+                    
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITD----ITVLSR------------------- 154

Query: 202 RILTIFMTIDLSSNKFQGGIPEVVG--KLNLLKGLNISHNNLTGLCGF 247
             LT   T+ L  N+    I ++V    L  L+ L +S N+++ L   
Sbjct: 155 --LTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLYLSKNHISDLRAL 196

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 23/142 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTS 67
              LDL    +  IE          N  + L     +D   N    K+   F     L +
Sbjct: 21  DRELDLRGYKIPVIE----------NLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKT 68

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGP 126
           L +N NR+             L  L + NN + +    + L  L  L  L +  N    P
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN----P 124

Query: 127 IGEN-----TTIVPFPSLRIID 143
           +          I   P +R++D
Sbjct: 125 VTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 22/145 (15%)

Query: 38  NLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97
            LT ++++      N               L+L G ++   +          + ++  +N
Sbjct: 3   KLTAELIEQAAQYTNA---------VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN 52

Query: 98  QIN--DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155
           +I   D FP     L  L+ L++ +NR              P L  + L++N    +   
Sbjct: 53  EIRKLDGFPL----LRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLVELGDL 106

Query: 156 GYLDNFKAM----MHGNNISVEVDY 176
             L + K++    +  N ++ +  Y
Sbjct: 107 DPLASLKSLTYLCILRNPVTNKKHY 131

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 42/170 (24%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVK-S 62
            +  L YL +SN  + ++          ++   +L   +LD++ N     I R  FV  S
Sbjct: 102 NLPNLQYLLISNTGIKHLP--------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 63  CNLTSLNLNGNRLEGPLPP-------------------------SLVNCHHLEVLNVGNN 97
                L LN N ++  +                                    +L++   
Sbjct: 154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212

Query: 98  QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147
           +I+      LE L +L+     + +          +    +L    L++ 
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNLKKLPT------LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 30/242 (12%), Positives = 69/242 (28%), Gaps = 33/242 (13%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLN 69
                + +T I    P N  +L F    L               I +  F    +L  + 
Sbjct: 14  FLCQESKVTEIPSDLPRNAIELRFVLTKLRV-------------IQKGAFSGFGDLEKIE 60

Query: 70  LNGNRLEGPLPPS----LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
           ++ N +   +       L   H + +     N +    P   + LP LQ L++ +     
Sbjct: 61  ISQNDVLEVIEADVFSNLPKLHEIRIEK--ANNLLYINPEAFQNLPNLQYLLISNTG--- 115

Query: 126 PIGE--NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-----MMHGNNI-SVEVDYM 177
            I    +   +      ++D+  N     +                ++ N I  +     
Sbjct: 116 -IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
                     S    ++ +   +    +  + +D+S  +        +  L  L+  +  
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 238 HN 239
           + 
Sbjct: 235 NL 236

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 37/152 (24%), Positives = 54/152 (35%), Gaps = 24/152 (15%)

Query: 5   GI-ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
            +      L LS N L          +      + LT   LD        K+        
Sbjct: 28  DLPKDTTILHLSENLLYTF---SLATLMPY---TRLTQLNLD---RAELTKLQ-VDGTLP 77

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
            L +L+L+ N+L+  LP        L VL+V  N++       L  L ELQ L L+ N  
Sbjct: 78  VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 124 WGPIGENTTI-----VPFPSLRIIDLSHNEFT 150
                   T+      P P L  + L++N  T
Sbjct: 137 -------KTLPPGLLTPTPKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 32/147 (21%)

Query: 12  LDLSNNFLTNIEYFP---PTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           ++     LT +   P   P + T L+   NL +                  +    LT L
Sbjct: 15  VNCDKRNLTAL---PPDLPKDTTILHLSENLLYTFS-----------LATLMPYTRLTQL 60

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           NL+   L             L  L++ +NQ+  + P   + LP L VL +  NR      
Sbjct: 61  NLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL----- 112

Query: 129 ENTTIVP--F---PSLRIIDLSHNEFT 150
             T++          L+ + L  NE  
Sbjct: 113 --TSLPLGALRGLGELQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
             +   +N +   L   LPP L  +     +L++  N +       L     L  L L  
Sbjct: 9   VASHLEVNCDKRNLTA-LPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 121 NRFWGPIGENTTIVPF---PSLRIIDLSHNEFT 150
                     T +      P L  +DLSHN+  
Sbjct: 65  AEL-------TKLQVDGTLPVLGTLDLSHNQLQ 90

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 27/126 (21%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPP------TNMTQLNFDSN-LTHKVLDMRMNNFNGKIP- 56
            +  L  LD+S N LT++   P         + +L    N L               +P 
Sbjct: 98  TLPALTVLDVSFNRLTSL---PLGALRGLGELQELYLKGNELKT-------------LPP 141

Query: 57  RKFVKSCNLTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
                +  L  L+L  N L   LP  L     +L+ L +  N +    P        L  
Sbjct: 142 GLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 116 LILRSN 121
             L  N
Sbjct: 200 AFLHGN 205

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 28/143 (19%)

Query: 5   GI-ATLYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSN------------LTH-KVLDMR 47
            +  +   LDLS N L ++    F     +  L+                L+H   L + 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 48  MNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQI-----ND 101
            N         F    +L  L      L   L      +   L+ LNV +N I      +
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 102 NFPNWLEILPELQVLILRSNRFW 124
            F N    L  L+ L L SN+  
Sbjct: 144 YFSN----LTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 48/218 (22%)

Query: 42  KVLDMRMNNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPP----SLVNCHHLEVLNVGN 96
           K LD+  N     +    F     L  L+L+   ++  +      SL +   L  L +  
Sbjct: 31  KNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH---LSTLILTG 85

Query: 97  NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI--VPF---PSLRIIDLSHNEFTG 151
           N I          L  LQ L+              ++   P     +L+ ++++HN    
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNL-------ASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 152 VLLTGYLDNFKAM----MHGNNI-SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTI 206
             L  Y  N   +    +  N I S+    +  L+         +              +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ--------MP------------LL 178

Query: 207 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
            +++DLS N      P    ++ L K L +  N L  +
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRL-KELALDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 32/152 (21%)

Query: 9   LYYLDLSNNFLTNIEYFP---PTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           L  L      L ++E FP      + +LN   NL              K+P  F    NL
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------KLPEYFSNLTNL 151

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEV----LNVGNNQINDNFPNWLEILPELQVLILRSN 121
             L+L+ N+++      L   H + +    L++  N +N            L+ L L +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

Query: 122 RFWGPIGENTTIVP------FPSLRIIDLSHN 147
                       VP        SL+ I L  N
Sbjct: 211 --------QLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 20/122 (16%)

Query: 8   TLYYLDLSNNFLTNIE---YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSC 63
           TL  L++++N + + +   YF  +N+T L        + LD+  N     I         
Sbjct: 125 TLKELNVAHNLIQSFKLPEYF--SNLTNL--------EHLDLSSNKIQ-SIYCTDLRVLH 173

Query: 64  NLT----SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
            +     SL+L+ N +   + P       L+ L +  NQ+        + L  LQ + L 
Sbjct: 174 QMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

Query: 120 SN 121
           +N
Sbjct: 233 TN 234

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 36/151 (23%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
             +L LS N +  I      +++ +    NL  ++L +  N    KI      +  L  L
Sbjct: 50  CKHLALSTNNIEKIS-----SLSGM---ENL--RILSLGRNLIK-KIENLDAVADTLEEL 98

Query: 69  NLNGNR---LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI-----LPELQVLILRS 120
            ++ N+   L G     +    +L VL + NN+I +    W EI     L +L+ L+L  
Sbjct: 99  WISYNQIASLSG-----IEKLVNLRVLYMSNNKITN----WGEIDKLAALDKLEDLLLAG 149

Query: 121 NRFWGPIGENTT--------IVPFPSLRIID 143
           N  +    EN          +   P+L+ +D
Sbjct: 150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 19/138 (13%)

Query: 64  NLTSLNLNGNR---LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
               L L+ N    +       L    +L +L++G N I     N   +   L+ L +  
Sbjct: 49  ACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISY 102

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDY 176
           N+    I   + I    +LR++ +S+N+ T       L     +    + GN +    DY
Sbjct: 103 NQ----IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY--NDY 156

Query: 177 MTPLNSSNYYESIILTIK 194
                +S Y   ++  + 
Sbjct: 157 KENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 18/92 (19%)

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNR 122
              L+     +E  +  +L      + L +  N I    +    L  +  L++L L  N 
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS----LSGMENLRILSLGRNL 81

Query: 123 FWGPIGENTTIVPF----PSLRIIDLSHNEFT 150
                     I        +L  + +S+N+  
Sbjct: 82  I-------KKIENLDAVADTLEELWISYNQIA 106

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 23/140 (16%)

Query: 11  YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTSLN 69
            LD   +    IE             +   + + L + +N     +     K   L  L 
Sbjct: 30  VLDNCKSNDGKIE----------GLTAEFVNLEFLSL-INVGLISVSN-LPKLPKLKKLE 77

Query: 70  LNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIG 128
           L+ NR+ G L        +L  LN+  N++ D +    L+ L  L+ L L +      + 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVT 133

Query: 129 E-----NTTIVPFPSLRIID 143
                  +     P L  +D
Sbjct: 134 NLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 63  CNLTSLNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILR 119
             +  L L+  +  +G +        +LE L++ N  +    N P     LP+L+ L L 
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLELS 79

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVD 175
            NR +G  G +      P+L  ++LS N+   +     L   + +    +    ++   D
Sbjct: 80  ENRIFG--GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 176 Y 176
           Y
Sbjct: 138 Y 138

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 30/141 (21%), Positives = 43/141 (30%), Gaps = 44/141 (31%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L +L   N  LT+I   P                                  K   L  L
Sbjct: 44  LEFLSTINVGLTSIANLP----------------------------------KLNKLKKL 69

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPI 127
            L+ NR+ G L      C +L  LN+  N+I D +    L+ L  L+ L L +      +
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EV 125

Query: 128 GEN-----TTIVPFPSLRIID 143
                         P L  +D
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 63  CNLTSLNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILR 119
            ++  L L+ +R  EG L         LE L+  N  +    N P     L +L+ L L 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLELS 72

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVD 175
            NR  G  G        P+L  ++LS N+   +     L   + +    +    ++   D
Sbjct: 73  DNRVSG--GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 176 Y 176
           Y
Sbjct: 131 Y 131

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 13/150 (8%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
            +   L L    L  I     +N+  +          + + ++    ++    F     +
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNI--------SRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 66  TSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPN--WLEILPELQVLILRSNR 122
           T + +   R    + P  L     L+ L + N  +   FP+   +       +L +  N 
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNP 141

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
           +   I  N           + L +N FT V
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 27/195 (13%), Positives = 63/195 (32%), Gaps = 20/195 (10%)

Query: 64  NLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNV-GNNQINDNFPNWLEILPELQVLILRSN 121
           +  +L L    L   +P  +  N  ++  + V  +  +     +    L ++  + +R+ 
Sbjct: 32  STQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFT----GVLLTGYLDNFKAMMHGNNISVEVDYM 177
           R    I +   +   P L+ + + +           +      F   +  N     +   
Sbjct: 91  RNLTYI-DPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 178 TPLNSSNYYESIILTIKGIDIKMERI------LTIFMTIDLSSNKFQGGIPEVV--GKLN 229
                 N   ++ L   G       +       T    + L+ NK+   I +    G  +
Sbjct: 150 AFQGLCNETLTLKLYNNGF----TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 230 LLKGLNISHNNLTGL 244
               L++S  ++T L
Sbjct: 206 GPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 26/129 (20%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSC 63
            +  L +L + N  L                 S     +L++  N +   IP   F   C
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLT-------KVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155

Query: 64  NLT-SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE---------L 113
           N T +L L  N     +     N   L+ + +  N        +L ++ +          
Sbjct: 156 NETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKN-------KYLTVIDKDAFGGVYSGP 207

Query: 114 QVLILRSNR 122
            +L +    
Sbjct: 208 SLLDVSQTS 216

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 17/114 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L ++ N L N+   P   +++L  D+N                     +   NL  L
Sbjct: 87  LEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT-------------DSLIHLKNLEIL 133

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
           ++  N+L+      L     LEVL++  N+I +     L  L ++  + L   +
Sbjct: 134 SIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 32/167 (19%), Positives = 71/167 (42%), Gaps = 24/167 (14%)

Query: 7   ATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           A     +L    +T++      + +   N D++    +  M+                NL
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFT-------------NL 65

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             L+L+ N++   L P L +   LE L+V  N++ +     +     L  L L +N    
Sbjct: 66  KELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNG--IPSAC-LSRLFLDNNE--- 117

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS 171
            + +  +++   +L I+ + +N+   +++ G+L   + + +HGN I+
Sbjct: 118 -LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 25/186 (13%), Positives = 54/186 (29%), Gaps = 39/186 (20%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           N    NL    +   +         ++  N  N+ I       ++    L+ L L  N+ 
Sbjct: 20  NAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ- 74

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
              I + + +     L  + ++ N    +         +  +  N +         L   
Sbjct: 75  ---ISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR----DTDSLIH- 126

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG--KLNLLKGLNISHNNL 241
                               L     + + +NK    +  +V    L+ L+ L++  N +
Sbjct: 127 --------------------LKNLEILSIRNNK----LKSIVMLGFLSKLEVLDLHGNEI 162

Query: 242 TGLCGF 247
           T   G 
Sbjct: 163 TNTGGL 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 49/298 (16%), Positives = 100/298 (33%), Gaps = 83/298 (27%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV------- 60
           T  Y++  +    + + F   N+++L     L   +L++R        P K V       
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--------PAKNVLIDGVLG 160

Query: 61  --KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV--LNVGNNQINDNFPNWLEILPELQVL 116
             K+  +        +++  +          ++  LN+ N    +       +L  LQ L
Sbjct: 161 SGKTW-VALDVCLSYKVQCKMD--------FKIFWLNLKNCNSPE------TVLEMLQKL 205

Query: 117 ILRSNRFWGPIGENTTIVPFPS------LRIIDLSHNEFTGVLLTGYLDN------FKAM 164
           + + +  W    ++++ +          LR + L    +   LL   L N      + A 
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLV--LLNVQNAKAWNAF 262

Query: 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV 224
               N+S +               I+LT +    ++   L+   T  +S +     +   
Sbjct: 263 ----NLSCK---------------ILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 225 VGKLNLLKGLNISHNNLTGLCGFPLLESCNIDEAPEPVGSTRFDEE--EDASSWFDWK 280
             K  LLK L+    +L      P  E    +    P   +   E   +  ++W +WK
Sbjct: 302 EVKSLLLKYLDCRPQDL------P-REVLTTN----PRRLSIIAESIRDGLATWDNWK 348

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 35/241 (14%), Positives = 69/241 (28%), Gaps = 64/241 (26%)

Query: 1   MWDLGIATLYYLDLSNNFLTNI-----EYFPPTNMTQLNF--------DSNLTHKVLDMR 47
            WD       +  ++ + LT I         P    ++ F         +++   +L + 
Sbjct: 343 TWD------NWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLI 395

Query: 48  MNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL------EVLN-------- 93
             +         V   +  SL      +E     S ++   +      ++ N        
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSL------VEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 94  VGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH--NEFTG 151
           V +  I   F +   I P L         F+  IG +        L+ I+       F  
Sbjct: 450 VDHYNIPKTFDSDDLIPPYL------DQYFYSHIGHH--------LKNIEHPERMTLFRM 495

Query: 152 VLLTGYLD-NF---KAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIF 207
           V    +LD  F   K        +     +  L    +Y+  I        ++   +  F
Sbjct: 496 V----FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 208 M 208
           +
Sbjct: 552 L 552

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  +DLSNN ++ +    P     L    +L    L +  N         F    +L  L
Sbjct: 58  LRRIDLSNNQISEL---APDAFQGL---RSLNS--LVLYGNKITELPKSLFEGLFSLQLL 109

Query: 69  NLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
            LN N++   L   +  + H+L +L++ +N++          L  +Q + L  N
Sbjct: 110 LLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 28/147 (19%)

Query: 27  PTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPP--- 81
           P  +T++  + N +               IP   F     L  ++L+ N++   L P   
Sbjct: 31  PETITEIRLEQNTIK-------------VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAF 76

Query: 82  -SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSL 139
             L +   L  L +  N+I +   +  E L  LQ+L+L +N+     +          +L
Sbjct: 77  QGLRS---LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNL 130

Query: 140 RIIDLSHNEFTGVLLTGYLDNFKAMMH 166
            ++ L  N+   +   G     +A+  
Sbjct: 131 NLLSLYDNKLQTI-AKGTFSPLRAIQT 156

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 40/194 (20%)

Query: 8   TLYYLDLSNNFLTN--IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-----IPRKFV 60
            L  +    N L N  ++ +             L    + M  N    +     +     
Sbjct: 160 PLRSIICGRNRLENGSMKEW----AKTFQSHRLLHT--VKMVQNGIRPEGIEHLLLEGLA 213

Query: 61  KSCNLTSLNLNGNRL--EG--PLPPSLVNCHHLEVLNVGNNQIND-----------NFPN 105
               L  L+L  N     G   L  +L +  +L  L + +  ++               N
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 106 WLEILPELQVLILRSNRFWGPIG----ENTTIVPFPSLRIIDLSHNEFT--GVLLTGYLD 159
                  LQ L L+ N           +       P L  ++L+ N F+    ++    +
Sbjct: 274 -----IGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327

Query: 160 NFKAMMHGNNISVE 173
            F     G    ++
Sbjct: 328 VFSTRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 41/285 (14%), Positives = 76/285 (26%), Gaps = 74/285 (25%)

Query: 4   LGIATLYYLDLSNNFLTN--IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPR 57
           +   ++    L  + +T    +         L  D ++    + +  N    +    +  
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSV----FAVLLEDDSVKE--IVLSGNTIGTEAARWLSE 54

Query: 58  KFVKSCNLTSLNLNGNRL-----EGP-----LPPSLVNCHHLEVLNVGNNQINDN----F 103
                 +L     +         E P     L  +L+ C  L  + + +N          
Sbjct: 55  NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 104 PNWLEILPELQVLILRSNRFWGPIG------------ENTTIVPFPSLRIIDLSHNEFT- 150
            ++L     L+ L L +N   GP               N      P LR I    N    
Sbjct: 115 IDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 151 --GVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL 204
                      + + +    M  N I  E                     GI+  +   L
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPE---------------------GIEHLLLEGL 212

Query: 205 ---TIFMTIDLSSNKF--QGG--IPEVVGKLNLLKGLNISHNNLT 242
                   +DL  N F   G   +   +     L+ L ++   L+
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 19/131 (14%)

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCH-----HLEVLNVGNNQINDNFPNWL------E 108
               NL SL +    L   +   ++         L +     +   D   N        +
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPF-PSLRIIDLSHNEFTGVLLTGYLDNFKAM--- 164
             P L+ L +        + E        P L  +D+S    T       LD+   +   
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 165 ----MHGNNIS 171
               M  N +S
Sbjct: 310 KFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.9 bits (92), Expect = 9e-04
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 42  KVLDMRMNNFNGKIPRKFVKS---CNLTSLNLNGNRL--EG--PLPPSLVNCHHLEVLNV 94
           K L +        +   F++S     L +++++   L  EG   L   +    HL+ +N+
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314

Query: 95  GNNQIND 101
             N ++D
Sbjct: 315 KYNYLSD 321

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 22/134 (16%)

Query: 5   GIATLYYLDLSNNFLTNIEYFP-PTNMTQLNFDSN----------LTH-KVLDMRMNNFN 52
            + ++  +  +N+ + +++      N+  L    N          LT+   L +  N   
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ 98

Query: 53  GKIPRK-FVKSCNLTSLNLNGNRLEGPLPP----SLVNCHHLEVLNVGNNQINDNFPNWL 107
             +P   F K  NL  L L  N+L+  LP      L N   L  LN+ +NQ+        
Sbjct: 99  -SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTN---LTYLNLAHNQLQSLPKGVF 153

Query: 108 EILPELQVLILRSN 121
           + L  L  L L  N
Sbjct: 154 DKLTNLTELDLSYN 167

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 38/168 (22%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS----- 62
            L  L +    +T         + +     +L    L +  N    +  R   ++     
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAK--ESLKE--LSLAGNELGDEGARLLCETLLEPG 312

Query: 63  CNLTSLNLNGNRL--EG--PLPPSLVNCHHLEVLNVGNNQINDN----------FPNWLE 108
           C L SL +                L     L  L + NN++ D            P    
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG--- 369

Query: 109 ILPELQVLILRSNRFWGPIGEN------TTIVPFPSLRIIDLSHNEFT 150
               L+VL L        + ++       T++   SLR +DLS+N   
Sbjct: 370 --SVLRVLWLADCD----VSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 41/181 (22%)

Query: 8   TLYYLDLSNNFLTN--IEYFPP--TNMTQLNFDSN-------------LTH----KVLDM 46
            +  LD+    L++       P       +  D               L        L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 47  RMNNFNGKIPRKF-----VKSCNLTSLNLNGNRL--EG--PLPPSLVNCHHLEVLNVGNN 97
           R N                 SC +  L+L    L   G   L  +L     L+ L++ +N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 98  QINDN-----FPNWLEILPELQVLILRSNRF----WGPIGENTTIVPFPSLRIIDLSHNE 148
            + D          L+    L+ L L           P+     +   P  + + +S+N+
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS--VLRAKPDFKELTVSNND 181

Query: 149 F 149
            
Sbjct: 182 I 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 45/186 (24%)

Query: 8   TLYYLDLSNNFLTN--IEYF------PPTNMTQLNFDSN-------------LTH----K 42
            L  L+L +N L +  +         P   + +L+  +              L      +
Sbjct: 57  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 43  VLDMRMNNFNGKIPRKFVK-----SCNLTSLNLNGNRL--EG--PLPPSLVNCHHLEVLN 93
            L +  N       +   +      C L  L L    L      PL   L      + L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 94  VGNNQINDNFPNWL-EILPE----LQVLILRSNRF----WGPIGENTTIVPFPSLRIIDL 144
           V NN IN+     L + L +    L+ L L S          +     +    SLR + L
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG--IVASKASLRELAL 234

Query: 145 SHNEFT 150
             N+  
Sbjct: 235 GSNKLG 240

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 34/211 (16%)

Query: 57  RKFVKSC-NLTSLNLNGNRL--EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEIL--- 110
               KS  N   L L+         L      C +L+ L++  + ++D   +WL      
Sbjct: 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182

Query: 111 -PELQVLILR------SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
              L  L +       S      +         P+L+ + L+      V L         
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTR-----CPNLKSLKLNRA----VPLE---KLATL 230

Query: 164 MMHGNNI-SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222
           +     +  +     T     + Y  + + + G   K  R L+ F     +       +P
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG--CKELRCLSGFWDAVPA------YLP 282

Query: 223 EVVGKLNLLKGLNISHNNLTGLCGFPLLESC 253
            V    + L  LN+S+  +       LL  C
Sbjct: 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 41/164 (25%)

Query: 5   GI-ATLYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRK- 58
            I A    LDL +N L+++    F   T +  L  + N L               +P   
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-------------TLPAGI 80

Query: 59  FVKSCNLTSLNLNGNRLEGPLPP----SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           F +  NL +L +  N+L+  LP      LVN   L  L +  NQ+    P   + L +L 
Sbjct: 81  FKELKNLETLWVTDNKLQA-LPIGVFDQLVN---LAELRLDRNQLKSLPPRVFDSLTKLT 136

Query: 115 VLILRSNRFWGPIGENTTIVP---F---PSLRIIDLSHNEFTGV 152
            L L  N            +P   F    SL+ + L +N+   V
Sbjct: 137 YLSLGYNEL--------QSLPKGVFDKLTSLKELRLYNNQLKRV 172

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 54/153 (35%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  L  ++ SNN +T+IE                                   F  +  
Sbjct: 55  KLPQLRKINFSNNKITDIE--------------------------------EGAFEGASG 82

Query: 65  LTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQI----NDNFPNWLEILPELQVLILR 119
           +  + L  NRLE  +   +      L+ L + +N+I    ND+F      L  +++L L 
Sbjct: 83  VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIG----LSSVRLLSLY 137

Query: 120 SNRFWGPIGENTTIVP-----FPSLRIIDLSHN 147
            N+        TT+ P       SL  ++L  N
Sbjct: 138 DNQI-------TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 15/118 (12%)

Query: 42  KVLDMRMNNFNGKIPRK--FVKSCNLTSLNLNGNRLEGPLPP----SLVNCHHLEVLNVG 95
             L +  N F   +     F K   L  +N + N++   +             +  + + 
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASG---VNEILLT 89

Query: 96  NNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGV 152
           +N++ +      + L  L+ L+LRSNR          + +   S+R++ L  N+ T V
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQITTV 144

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 12/111 (10%)

Query: 14  LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNG 72
             +  L ++ + P           NLT   L +        +  + ++    L +L +  
Sbjct: 16  TRDGALDSLHHLPGA--------ENLTE--LYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 73  NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           + L    P +      L  LN+  N +       ++ L  LQ L+L  N  
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 47/189 (24%)

Query: 7   ATLYYLDLSNNFLTN--IEYF------PPTNMTQLNFDSN-------------LTH---- 41
            T+  LDL  N  ++     F       P ++T LN   N             L      
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 42  -KVLDMRMNNFN---GKIPRKFVKSCN--LTSLNLNGNRL--EG--PLPPSLVNCH-HLE 90
              L++R NN          KF+ S    +TSL+L+ N L  +    L     +   H+ 
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 91  VLNVGNNQIND----NFPNWLEILPELQVLILRSNRFWGPIGEN------TTIVPFPSLR 140
            LN+  N ++     N     + L  LQ + L  +     + +               + 
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKII 287

Query: 141 IIDLSHNEF 149
           ++D +  E 
Sbjct: 288 LVDKNGKEI 296

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 32/134 (23%), Positives = 47/134 (35%), Gaps = 42/134 (31%)

Query: 5   GIATLYYLDLSNNFLTNIE---YFPPTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRK-F 59
           G+  L +L+L  N L  +    +   T +  L   +N L               +P   F
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-------------SLPLGVF 103

Query: 60  VKSCNLTSLNLNGNRLEGPLPP----SLVNCHHLEVLNVGNNQINDNFPNWLEILPE--- 112
                L  L L GN+L+  LP      L     L+ L +  NQ        L+ +P    
Sbjct: 104 DHLTQLDKLYLGGNQLKS-LPSGVFDRLTK---LKELRLNTNQ--------LQSIPAGAF 151

Query: 113 -----LQVLILRSN 121
                LQ L L +N
Sbjct: 152 DKLTNLQTLSLSTN 165

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 29/199 (14%)

Query: 64  NLTSLNLNGNRL--EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE----LQVLI 117
           +L +L L+         L   + +C  ++ L +  +  ++    WL  L +    L+VL 
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198

Query: 118 LRSNRFWGPIGEN--TTIVPF-PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV 174
                F   I      TI     SL  + +   E   + L G+      +      S+  
Sbjct: 199 FYMTEFAK-ISPKDLETIARNCRSLVSVKVGDFEI--LELVGFFKAAANLEEFCGGSLNE 255

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234
           D   P    N      L   G+                 S      +P +      ++ L
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGL-----------------SYMGPNEMPILFPFAAQIRKL 298

Query: 235 NISHNNLTGLCGFPLLESC 253
           ++ +  L       L++ C
Sbjct: 299 DLLYALLETEDHCTLIQKC 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.59
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.46
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.41
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.79
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.6
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.91
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.9
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.35
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.16

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=2.3e-30  Score=255.51  Aligned_cols=150  Identities=29%  Similarity=0.435  Sum_probs=114.2

Q ss_pred             CCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924            6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   69 (334)
                      +++|++|++++|.+++..|   ..+++|+.|++++|             ++|++|++++|++++.+|..+..+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            4567777777776665555   45667777777777             5677778888877777777777788888888


Q ss_pred             CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924           70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus        70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      +++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+  ..+++|+.|++++|.+
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEE
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCcc
Confidence            88888877778778888888888888888887778888888888888888888877777755  7778888888888888


Q ss_pred             ccccchhh
Q 019924          150 TGVLLTGY  157 (334)
Q Consensus       150 ~~~~~~~~  157 (334)
                      ++.+|..+
T Consensus       551 ~g~ip~~~  558 (768)
T 3rgz_A          551 NGTIPAAM  558 (768)
T ss_dssp             ESBCCGGG
T ss_pred             CCcCChHH
Confidence            87777554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=3.4e-29  Score=221.74  Aligned_cols=213  Identities=24%  Similarity=0.275  Sum_probs=137.0

Q ss_pred             CcccEEEcCCCCCCC--CCC---CCCCCCCeEECCC-C-------------CCCCEEeCCCCcCccccCcCccCCCCccE
Q 019924            7 ATLYYLDLSNNFLTN--IEY---FPPTNMTQLNFDS-N-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS   67 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~--~~~---~~~~~L~~L~l~~-n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   67 (334)
                      .+++.|++++|.+++  ..+   ..+++|++|++++ |             ++|++|++++|++++.+|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999997  555   4566676666663 3             56666666666666666666666666677


Q ss_pred             EeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCC-CCCEEEeecccCcccCCCCCCCCCCCCccEEEecC
Q 019924           68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILP-ELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH  146 (334)
Q Consensus        68 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~  146 (334)
                      |++++|++++.+|..+.++++|++|++++|++++..|..+..++ +|++|++++|++++.+|..+  ..++ |+.|++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccEEECcC
Confidence            77766666666666666666677777766666655666666665 66667766666665555544  4444 66666666


Q ss_pred             CccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhh
Q 019924          147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG  226 (334)
Q Consensus       147 N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  226 (334)
                      |.+++..+.. +..+++|+.++...+                   .+.+.... +..+++|++|+|++|++++.+|..+.
T Consensus       207 N~l~~~~~~~-~~~l~~L~~L~L~~N-------------------~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~  265 (313)
T 1ogq_A          207 NMLEGDASVL-FGSDKNTQKIHLAKN-------------------SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             SEEEECCGGG-CCTTSCCSEEECCSS-------------------EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             CcccCcCCHH-HhcCCCCCEEECCCC-------------------ceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence            6666554432 344444433333221                   12211111 23356777777777777777777777


Q ss_pred             CcCCCCeeeccCCccCC
Q 019924          227 KLNLLKGLNISHNNLTG  243 (334)
Q Consensus       227 ~l~~L~~L~Ls~N~l~~  243 (334)
                      .+++|+.|++++|++++
T Consensus       266 ~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          266 QLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             GCTTCCEEECCSSEEEE
T ss_pred             cCcCCCEEECcCCcccc
Confidence            77777777777777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=5e-28  Score=238.85  Aligned_cols=159  Identities=27%  Similarity=0.388  Sum_probs=121.6

Q ss_pred             cccEEEcCCCCCCCCCC---C--CCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924            8 TLYYLDLSNNFLTNIEY---F--PPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~---~--~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   69 (334)
                      +|++|++++|.+++..+   .  .+++|+.|++++|             ++|++|++++|++++.+|..|..+++|+.|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            45555555555544333   1  1556777777777             5788888888888888888888888888888


Q ss_pred             CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924           70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus        70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      +++|++++.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+  ..+++|++|++++|++
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSF  526 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCC
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcc
Confidence            88888888888888888888888888888888788888888888888888888888887765  7788899999999988


Q ss_pred             ccccchhhHHhHHhhhhcCC
Q 019924          150 TGVLLTGYLDNFKAMMHGNN  169 (334)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~  169 (334)
                      ++.+|.. +..+++|..++.
T Consensus       527 ~~~~p~~-l~~l~~L~~L~L  545 (768)
T 3rgz_A          527 SGNIPAE-LGDCRSLIWLDL  545 (768)
T ss_dssp             EEECCGG-GGGCTTCCEEEC
T ss_pred             cCcCCHH-HcCCCCCCEEEC
Confidence            8877755 666666655544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.6e-26  Score=201.73  Aligned_cols=216  Identities=17%  Similarity=0.132  Sum_probs=160.8

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc-c
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-L   75 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l   75 (334)
                      ++++.+++.++.++....++++.|++++|             ++|++|++++|.+++..|..|..+++|++|++++|+ +
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence            45566666666555444556666666655             466889999999887778888889999999999987 7


Q ss_pred             ccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccch
Q 019924           76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT  155 (334)
Q Consensus        76 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  155 (334)
                      +...|..+.++++|++|++++|.+++..|..+..+++|++|++++|++++..+..+  ..+++|+.|++++|.+++..+ 
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-  170 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPE-  170 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECT-
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCH-
Confidence            76667888888999999999999888778888888999999999998876555444  778889999999998876544 


Q ss_pred             hhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeee
Q 019924          156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN  235 (334)
Q Consensus       156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  235 (334)
                      ..+..+++|..++...+                   .+.++....+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus       171 ~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQN-------------------RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (285)
T ss_dssp             TTTTTCTTCCEEECCSS-------------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             HHhcCccccCEEECCCC-------------------cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence            22444444444333221                   12223334445578899999999999977777899999999999


Q ss_pred             ccCCccCCCCCC
Q 019924          236 ISHNNLTGLCGF  247 (334)
Q Consensus       236 Ls~N~l~~l~~~  247 (334)
                      +++|++++.|..
T Consensus       232 l~~N~~~c~~~~  243 (285)
T 1ozn_A          232 LNDNPWVCDCRA  243 (285)
T ss_dssp             CCSSCEECSGGG
T ss_pred             ccCCCccCCCCc
Confidence            999999876654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6e-27  Score=206.57  Aligned_cols=218  Identities=19%  Similarity=0.253  Sum_probs=175.1

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC---------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n---------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   68 (334)
                      ++|++|++++|.++.+++   ..+++|+.|++++|               ++|++|++++|.++ .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            589999999999998776   46788999999988               67999999999998 567778899999999


Q ss_pred             eCCCCccccCCC-ccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc-cCCCCCCCCCCCCccEEEecC
Q 019924           69 NLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSH  146 (334)
Q Consensus        69 ~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~  146 (334)
                      ++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..+..+  ..+++|+.|++++
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~  184 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQ  184 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTT
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH--hhCcCCCEEECCC
Confidence            999999986554 578889999999999999988888888999999999999999876 456655  7889999999999


Q ss_pred             CccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhh
Q 019924          147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG  226 (334)
Q Consensus       147 N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  226 (334)
                      |.+++..+.. +..+++|+.++...+.                   +..++...+..+++|+.|++++|++++..|..+.
T Consensus       185 n~l~~~~~~~-~~~l~~L~~L~L~~N~-------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          185 CQLEQLSPTA-FNSLSSLQVLNMSHNN-------------------FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECTTSC-------------------CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             CCcCCcCHHH-hcCCCCCCEEECCCCc-------------------cCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence            9998765533 4555555444432221                   2223333445578899999999999988888888


Q ss_pred             CcC-CCCeeeccCCccCCCCCC
Q 019924          227 KLN-LLKGLNISHNNLTGLCGF  247 (334)
Q Consensus       227 ~l~-~L~~L~Ls~N~l~~l~~~  247 (334)
                      .++ +|+.|++++|++++.|..
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSGGG
T ss_pred             hhhccCCEEEccCCCeecccCh
Confidence            884 899999999999887753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=7.5e-27  Score=217.06  Aligned_cols=150  Identities=23%  Similarity=0.257  Sum_probs=122.0

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC--------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   69 (334)
                      ++|++||+++|.++++.+   ..+++|++|++++|              ++|++|++++|++++..|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            578999999999998766   56788999999888              6789999999999988899999999999999


Q ss_pred             CCCCccccCCCcc--ccCCCCCCEEEccCCcCCcCCChh-hhcCCCCCEEEeecccCcccCCCCCC--------------
Q 019924           70 LNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRSNRFWGPIGENTT--------------  132 (334)
Q Consensus        70 L~~n~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~--------------  132 (334)
                      +++|++++..|..  +.++++|++|++++|++++..|.. +..+++|++|++++|++++..+..+.              
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999998654444  888999999999999998876765 78999999999999998776655431              


Q ss_pred             ------------------CCCCCCccEEEecCCccccccchh
Q 019924          133 ------------------IVPFPSLRIIDLSHNEFTGVLLTG  156 (334)
Q Consensus       133 ------------------~~~l~~L~~L~Ls~N~l~~~~~~~  156 (334)
                                        +..+++|+.|++++|.+++..+..
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  231 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR  231 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence                              113367888888888776654433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=7.1e-27  Score=218.63  Aligned_cols=239  Identities=19%  Similarity=0.138  Sum_probs=129.7

Q ss_pred             CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   68 (334)
                      ++++|++|+|++|.++++.+   ..+++|+.|++++|             ++|++|++++|++++..|..|..+++|++|
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            34555555555555555543   33455555555555             455566666666655555555566666666


Q ss_pred             eCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEec---
Q 019924           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS---  145 (334)
Q Consensus        69 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls---  145 (334)
                      ++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+  ..+++|+.|+++   
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWP  211 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCT
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCc
Confidence            666666655555556666666666666666655444555566666666666666544333322  444444444444   


Q ss_pred             ---------------------CCccccccchhhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEEEeccchh
Q 019924          146 ---------------------HNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILTIKGIDIK  199 (334)
Q Consensus       146 ---------------------~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~  199 (334)
                                           +|.+++. +...+..+++|+.++...+.+....     .......+....+.+..+...
T Consensus       212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (477)
T 2id5_A          212 YLDTMTPNCLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY  290 (477)
T ss_dssp             TCCEECTTTTTTCCCSEEEEESSCCCSC-CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred             cccccCcccccCccccEEECcCCccccc-CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence                                 3444322 2223444444444444332222211     112222222222233344445


Q ss_pred             hhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       200 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~  246 (334)
                      .+..+++|+.|+|++|++++..+..|..+++|+.|++++|++++.|.
T Consensus       291 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            55567778888888888876666667777888888888888776664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.9e-26  Score=214.27  Aligned_cols=106  Identities=20%  Similarity=0.239  Sum_probs=82.0

Q ss_pred             cCCCcccEEEcCCCCCCCCC-C---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcC--ccCCCC
Q 019924            4 LGIATLYYLDLSNNFLTNIE-Y---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRK--FVKSCN   64 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~-~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~--~~~l~~   64 (334)
                      .++++|++|++++|.+.+.. +   ..+++|++|++++|             ++|++|++++|++++..|..  |..+++
T Consensus        51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  130 (455)
T 3v47_A           51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS  130 (455)
T ss_dssp             SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred             ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence            35788888888888886432 2   55778888888888             67888888888888655544  888888


Q ss_pred             ccEEeCCCCccccCCCcc-ccCCCCCCEEEccCCcCCcCCChhhhc
Q 019924           65 LTSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEI  109 (334)
Q Consensus        65 L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~l~~  109 (334)
                      |++|++++|++++..|.. +.++++|++|++++|++++..+..+..
T Consensus       131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  176 (455)
T 3v47_A          131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN  176 (455)
T ss_dssp             CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred             CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence            888888888888776765 788888888888888888766655543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=2.5e-25  Score=192.70  Aligned_cols=193  Identities=22%  Similarity=0.210  Sum_probs=113.3

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~   74 (334)
                      +.+.++++++.++.++....++++.|++++|             ++|++|++++|+++...+..|..+++|++|++++|+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            5788999999999876644555655544444             344445555555443333334444455555555555


Q ss_pred             cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus        75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      +++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+  ..+++|+.|++++|.+++.  
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~--  172 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--DKLTSLKELRLYNNQLKRV--  172 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCC--
T ss_pred             CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc--cCCcccceeEecCCcCcEe--
Confidence            443333444444455555555555444444444444555555555554433222222  4444455555555544432  


Q ss_pred             hhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCee
Q 019924          155 TGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL  234 (334)
Q Consensus       155 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  234 (334)
                                                                +...+..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus       173 ------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          173 ------------------------------------------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             ------------------------------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             ------------------------------------------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence                                                      22223347889999999999997777778999999999


Q ss_pred             eccCCccCCCCC
Q 019924          235 NISHNNLTGLCG  246 (334)
Q Consensus       235 ~Ls~N~l~~l~~  246 (334)
                      ++++|++.+.|.
T Consensus       211 ~l~~N~~~c~c~  222 (270)
T 2o6q_A          211 QLQENPWDCTCN  222 (270)
T ss_dssp             ECCSSCBCCSSS
T ss_pred             EecCCCeeCCCc
Confidence            999999987775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=3.1e-26  Score=214.24  Aligned_cols=235  Identities=20%  Similarity=0.149  Sum_probs=171.9

Q ss_pred             cCCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccE
Q 019924            4 LGIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS   67 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   67 (334)
                      .++++|++|+|++|.++++++   ..+++|+.|++++|             ++|++|++++|++++..+..|..+++|+.
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  156 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ  156 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred             hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence            367899999999999998876   46789999999988             68999999999999888889999999999


Q ss_pred             EeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCC----------------
Q 019924           68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT----------------  131 (334)
Q Consensus        68 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~----------------  131 (334)
                      |++++|++++..+..+.++++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++...                
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  236 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL  236 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence            9999999997666678889999999999998888777677777777777776655433322210                


Q ss_pred             ------CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccc-----cCCCCCCceeeEEEEEeccchhh
Q 019924          132 ------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM-----TPLNSSNYYESIILTIKGIDIKM  200 (334)
Q Consensus       132 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~  200 (334)
                            .+..+++|+.|++++|.+++..+ ..+..+.+|+.++...+.+...     ........+....+.+..++...
T Consensus       237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          237 TAVPYLAVRHLVYLRFLNLSYNPISTIEG-SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             CSCCHHHHTTCTTCCEEECCSSCCCEECT-TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             cccCHHHhcCccccCeeECCCCcCCccCh-hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence                  23678899999999999987655 3366677776666544433322     23333444444444566667777


Q ss_pred             hhhhhheeEEEccCcccccCCc-hhhhCcCCCCeeeccCCcc
Q 019924          201 ERILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNISHNNL  241 (334)
Q Consensus       201 ~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l  241 (334)
                      +..+++|+.|+|++|.+....+ .++  ...+..+++.++..
T Consensus       316 ~~~l~~L~~L~l~~N~l~c~c~~~~~--~~~~~~~~~~~~~~  355 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLACDCRLLWV--FRRRWRLNFNRQQP  355 (477)
T ss_dssp             BSCGGGCCEEECCSSCEECSGGGHHH--HTTTTSSCCTTCCC
T ss_pred             cCCCcccCEEEccCCCccCccchHhH--HhhhhccccCccCc
Confidence            7788999999999999985432 122  22333455555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=1.2e-25  Score=219.21  Aligned_cols=237  Identities=19%  Similarity=0.189  Sum_probs=180.2

Q ss_pred             CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-----------------CCCCEEeCCCCcCccccCcCccCCCC
Q 019924            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKSCN   64 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~~p~~~~~l~~   64 (334)
                      ++++|++|++++|.+++..+   ..+++|++|++++|                 +.|++|++++|++++..|..|..+++
T Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            57899999999999998876   56788999999987                 37999999999999888999999999


Q ss_pred             ccEEeCCCCccccCCC-ccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc--ccCCCCCCCCCCCCccE
Q 019924           65 LTSLNLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGENTTIVPFPSLRI  141 (334)
Q Consensus        65 L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~  141 (334)
                      |+.|++++|++++.+| ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+.  +..|..+  ..+++|+.
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~  484 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTI  484 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCE
T ss_pred             CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCE
Confidence            9999999999987655 68899999999999999998877888888888888888888875  3445544  77888888


Q ss_pred             EEecCCccccccchhhHHhHHhhhhcCCcccccccc-------------cCCCCCCceeeEEEEEeccchhhhhhhhhee
Q 019924          142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM-------------TPLNSSNYYESIILTIKGIDIKMERILTIFM  208 (334)
Q Consensus       142 L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~  208 (334)
                      |++++|++++..+ ..+..+++|+.++...+.+..+             ........+....+.+..++...+..+++|+
T Consensus       485 L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          485 LDLSNNNIANIND-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EECCCCCCCcCCh-hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence            8888888886544 3366666666655544333322             1222222333333334455555666778888


Q ss_pred             EEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       209 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      .|+|++|++++..+..|..+++|+.|++++|+++++
T Consensus       564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  599 (680)
T 1ziw_A          564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV  599 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence            888888888866666677888888888888887754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=6.5e-26  Score=218.16  Aligned_cols=234  Identities=19%  Similarity=0.181  Sum_probs=132.5

Q ss_pred             cccEEEcCCCCCCCCCC---CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      +|+.|++++|.++++++   ..+++|+.|++++|            ++|++|++++|++++..|..+..+++|++|++++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            56666666666666555   34556666666666            4566666666666665566666666666666666


Q ss_pred             CccccCCCc-cccCCCCCCEEEccCCcCCcCC--ChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924           73 NRLEGPLPP-SLVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus        73 n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      |.+.+.+|. .+.++++|++|++++|.+++..  +..+..+++|++|++++|++.+..+..+  ..+++|+.|++++|.+
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCE
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcC
Confidence            666544433 3666666666666666665543  4556666666666666666655555444  5566666666666666


Q ss_pred             ccccchhhHHhHHhhhhcCCcccccccccC--CCCCCceeeEEEEEeccch------hhhhhhhheeEEEccCcccccCC
Q 019924          150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILTIKGIDI------KMERILTIFMTIDLSSNKFQGGI  221 (334)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~  221 (334)
                      .+..+...+..+++|..++.....+.....  ......+..+.+..+.+..      ..+..+++|+.|++++|++++..
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence            655444444455555444443322221111  1111222222222222211      23444666667777777666666


Q ss_pred             chhhhCcCCCCeeeccCCccCC
Q 019924          222 PEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       222 p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                      |..+..+++|+.|++++|++++
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCG
T ss_pred             hhhhccccCCCEEECCCCccCc
Confidence            6666666667777777766664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=4.7e-25  Score=192.89  Aligned_cols=194  Identities=23%  Similarity=0.172  Sum_probs=145.8

Q ss_pred             cCCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      .++++++.+++++|.++.+++...++++.|++++|             ++|++|++++|++++..+ . ..+++|++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~L   84 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDL   84 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEEC
T ss_pred             cccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEEC
Confidence            36789999999999999888766678877777777             567777777777774332 2 56777777777


Q ss_pred             CCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924           71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      ++|+++ .+|..+.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+  ..+++|+.|++++|+++
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCS
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc--ccccCCCEEECCCCcCC
Confidence            777777 566667777777777777777777666677777777777777777765444433  66777777777777776


Q ss_pred             cccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCC
Q 019924          151 GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL  230 (334)
Q Consensus       151 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  230 (334)
                      +..+                                            ..+..+++|+.|+|++|+++ .+|..+..+++
T Consensus       162 ~l~~--------------------------------------------~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~  196 (290)
T 1p9a_G          162 ELPA--------------------------------------------GLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (290)
T ss_dssp             CCCT--------------------------------------------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             ccCH--------------------------------------------HHhcCcCCCCEEECCCCcCC-ccChhhccccc
Confidence            4332                                            12223678999999999998 78888888999


Q ss_pred             CCeeeccCCccCCCCCC
Q 019924          231 LKGLNISHNNLTGLCGF  247 (334)
Q Consensus       231 L~~L~Ls~N~l~~l~~~  247 (334)
                      |+.+++++|++.+-|+.
T Consensus       197 L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          197 LPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CSEEECCSCCBCCSGGG
T ss_pred             CCeEEeCCCCccCcCcc
Confidence            99999999999887753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=2e-25  Score=193.89  Aligned_cols=208  Identities=18%  Similarity=0.151  Sum_probs=163.3

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~   87 (334)
                      +|++|++++|.++++++..+.++..|        ++|++++|++++..+..|..+++|++|++++|++++..+..|.+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTC--------SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CccEEECCCCcccccCHhHhccccCC--------cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            57888888888877766555555544        9999999999987778899999999999999999988888899999


Q ss_pred             CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCccc-CCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus        88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      +|++|++++|.+.+..+..++.+++|++|++++|++++. ++..+  ..+++|+.|++++|++++..+. .+..+..+..
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~  177 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPL  177 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGG-GGHHHHTCTT
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHH-Hhhhhhhccc
Confidence            999999999999987776789999999999999999753 35544  7899999999999999876553 3666665543


Q ss_pred             cC----CcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924          167 GN----NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       167 ~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      +.    ...+.                   +..++...+. ..+|+.|++++|++++..+..+.++++|+.|++++|+++
T Consensus       178 l~l~L~ls~n~-------------------l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          178 LNLSLDLSLNP-------------------MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCEEEECCSSC-------------------CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cceeeecCCCc-------------------ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            22    11111                   1112222222 337999999999999777777899999999999999999


Q ss_pred             CCCC
Q 019924          243 GLCG  246 (334)
Q Consensus       243 ~l~~  246 (334)
                      +-|.
T Consensus       238 c~c~  241 (276)
T 2z62_A          238 CSCP  241 (276)
T ss_dssp             CCTT
T ss_pred             ccCC
Confidence            7764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=201.88  Aligned_cols=235  Identities=19%  Similarity=0.192  Sum_probs=150.3

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      ++|++|++++|.++++++   ..+++|+.|++++|             ++|++|++++|++++..+..|..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            467777777777776655   45566777777766             56777777777777544444677777777777


Q ss_pred             CCCccccCCC-ccccCCCCCCEEEccCC-cCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924           71 NGNRLEGPLP-PSLVNCHHLEVLNVGNN-QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (334)
Q Consensus        71 ~~n~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  148 (334)
                      ++|++++..+ ..+.++++|++|++++| .++...+..+..+++|++|++++|++++..+..+  ..+++|++|++++|.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQ  209 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSC
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCc
Confidence            7777763333 35667777777777776 4555556667777777777777777766655554  667777777777777


Q ss_pred             cccccchhhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEEEeccch-------hhhhhhhheeEEEccCcc
Q 019924          149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILTIKGIDI-------KMERILTIFMTIDLSSNK  216 (334)
Q Consensus       149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~-------~~~~~l~~L~~L~Ls~N~  216 (334)
                      +.. .+...+..+++|+.++...+.+....     .......+....+....+..       ..+..+++|+.|++++|+
T Consensus       210 l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          210 HIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             STT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             ccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            653 33344444555555444333222211     11111222233333222222       234557899999999999


Q ss_pred             cccCCchh-hhCcCCCCeeeccCCccCCCC
Q 019924          217 FQGGIPEV-VGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       217 l~~~~p~~-l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      ++ .+|.. +.++++|+.|++++|++++.|
T Consensus       289 l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          289 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            99 56655 689999999999999998766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=8.3e-26  Score=209.99  Aligned_cols=217  Identities=18%  Similarity=0.178  Sum_probs=121.2

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      +++++|+|++|.++++.+   ..+++|+.|++++|             ++|++|+|++|+++...+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            356677777777766655   33444445555444             34455555555554444444444555555555


Q ss_pred             CCCccccCCCccccCCCCCCEEEccC-CcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924           71 NGNRLEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus        71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      ++|+++...+..|.++++|++|++++ |.+....+..|..+++|++|++++|++++. +.   +..+++|+.|++++|.+
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~---~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN---LTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC---CTTCTTCCEEECTTSCC
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc---ccccccccEEECcCCcC
Confidence            55555443344444455555555554 233333333444555555555555554322 11   24445555555555555


Q ss_pred             ccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924          150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN  229 (334)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  229 (334)
                      ++..+.. +.++++|+.++.                   ..+.+..+....+..+++|+.|+|++|++++..+..+..++
T Consensus       231 ~~~~~~~-~~~l~~L~~L~L-------------------~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          231 PEIRPGS-FHGLSSLKKLWV-------------------MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             SEECGGG-GTTCTTCCEEEC-------------------TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             cccCccc-ccCccCCCEEEe-------------------CCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            5443322 333333332222                   22233344455566789999999999999977778889999


Q ss_pred             CCCeeeccCCccCCCCCC
Q 019924          230 LLKGLNISHNNLTGLCGF  247 (334)
Q Consensus       230 ~L~~L~Ls~N~l~~l~~~  247 (334)
                      +|+.|++++|++.+.|..
T Consensus       291 ~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          291 YLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TCCEEECCSSCEECSTTT
T ss_pred             CCCEEEccCCCcCCCCCc
Confidence            999999999999987763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.1e-25  Score=200.36  Aligned_cols=147  Identities=18%  Similarity=0.220  Sum_probs=127.8

Q ss_pred             CCCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      ..++++.|++++|.++.+++  ..+++|++|++++|            ++|++|++++|+++ .+|..+..+++|++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            45789999999999997766  56889999999988            78999999999999 78999999999999999


Q ss_pred             CCCccccCCCccccC---------CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccE
Q 019924           71 NGNRLEGPLPPSLVN---------CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI  141 (334)
Q Consensus        71 ~~n~l~~~~p~~l~~---------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  141 (334)
                      ++|++.+.+|..+..         +++|++|++++|+++ .+|..++.+++|++|++++|++++ ++..+  ..+++|+.
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l--~~l~~L~~  233 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI--HHLPKLEE  233 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG--GGCTTCCE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh--ccCCCCCE
Confidence            998888888887764         999999999999998 478889999999999999999975 44434  78999999


Q ss_pred             EEecCCccccccchh
Q 019924          142 IDLSHNEFTGVLLTG  156 (334)
Q Consensus       142 L~Ls~N~l~~~~~~~  156 (334)
                      |++++|.+.+.++..
T Consensus       234 L~Ls~n~~~~~~p~~  248 (328)
T 4fcg_A          234 LDLRGCTALRNYPPI  248 (328)
T ss_dssp             EECTTCTTCCBCCCC
T ss_pred             EECcCCcchhhhHHH
Confidence            999999988876643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=1.3e-26  Score=230.95  Aligned_cols=110  Identities=21%  Similarity=0.227  Sum_probs=67.8

Q ss_pred             CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  119 (334)
                      +|++|++++|.+.+..|..|..+++|+.|++++|++++..|..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            45666666666665556666666666666666666665556666666666666666666666556666666666666666


Q ss_pred             cccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus       120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                      +|++.+..+..+  ..+++|+.|++++|.+++
T Consensus       347 ~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          347 KNHIAIIQDQTF--KFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             SCCCCCCCSSCS--CSCCCCCEEEEETCCSCC
T ss_pred             CCCCCccChhhh--cCCCCCCEEECCCCCCCc
Confidence            666644443333  556666666666665553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.2e-24  Score=189.93  Aligned_cols=185  Identities=19%  Similarity=0.121  Sum_probs=155.0

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc-CCcCCChhhhcCCCCCEEE
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLI  117 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~  117 (334)
                      +++++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++|. ++...|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            688999999999998888889999999999999999998889999999999999999997 8887788999999999999


Q ss_pred             eecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc
Q 019924          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID  197 (334)
Q Consensus       118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (334)
                      +++|++++..+..+  ..+++|++|++++|.+++..+ ..+..+++|+.++...+                   .+..++
T Consensus       112 l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-------------------~l~~~~  169 (285)
T 1ozn_A          112 LDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGN-------------------RISSVP  169 (285)
T ss_dssp             CTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-------------------CCCEEC
T ss_pred             CCCCcCCEECHhHh--hCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCC-------------------cccccC
Confidence            99999987766655  889999999999999986654 33555555554444222                   122334


Q ss_pred             hhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      ...+..+++|+.|++++|.+++..|..+.++++|+.|++++|+++++.
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            444556889999999999999888999999999999999999988643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=8.6e-26  Score=201.10  Aligned_cols=189  Identities=18%  Similarity=0.173  Sum_probs=112.6

Q ss_pred             CCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccC---------C
Q 019924            6 IATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVK---------S   62 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~---------l   62 (334)
                      +++|++|++++|.++.++.  ..+++|++|++++|            ++|++|++++|++.+.+|..+..         +
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            5566666666666664333  34556666666665            45666666665555555555443         6


Q ss_pred             CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEE
Q 019924           63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII  142 (334)
Q Consensus        63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  142 (334)
                      ++|++|++++|+++ .+|..+.++++|++|++++|++++ +|..+..+++|++|++++|.+.+.+|..+  ..+++|+.|
T Consensus       183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L  258 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF--GGRAPLKRL  258 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCEE
T ss_pred             CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh--cCCCCCCEE
Confidence            66666666666666 555566666666666666666665 44456666666666666666655555544  556666666


Q ss_pred             EecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCc
Q 019924          143 DLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP  222 (334)
Q Consensus       143 ~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  222 (334)
                      ++++|.+.+.+|.. +                                           ..+++|+.|+|++|.+.+.+|
T Consensus       259 ~L~~n~~~~~~p~~-~-------------------------------------------~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          259 ILKDCSNLLTLPLD-I-------------------------------------------HRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             ECTTCTTCCBCCTT-G-------------------------------------------GGCTTCCEEECTTCTTCCCCC
T ss_pred             ECCCCCchhhcchh-h-------------------------------------------hcCCCCCEEeCCCCCchhhcc
Confidence            66666655544432 1                                           114556666666666666666


Q ss_pred             hhhhCcCCCCeeeccCCccC
Q 019924          223 EVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       223 ~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      +.+.++++|+.+++..|.+.
T Consensus       295 ~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          295 SLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGGGGSCTTCEEECCGGGSC
T ss_pred             HHHhhccCceEEeCCHHHHH
Confidence            66666666666666665544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=207.69  Aligned_cols=226  Identities=19%  Similarity=0.173  Sum_probs=117.6

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l   83 (334)
                      ++++.|+|++|.++++.+   ..+++|           ++|+|++|++++..+..|.++++|++|++++|+++...+..|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L-----------~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  132 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHL-----------EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF  132 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSC-----------CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCC-----------CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence            345666666666665554   233444           555555555554444445555555555555555543333344


Q ss_pred             cCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHh
Q 019924           84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA  163 (334)
Q Consensus        84 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  163 (334)
                      .++++|++|++++|+++...+..|..+++|++|++++|...+.++.. .+..+++|+.|++++|.++....   +..+.+
T Consensus       133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~  208 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIPN---LTPLIK  208 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCSSCCC---CTTCSS
T ss_pred             hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCccccc---cCCCcc
Confidence            45555555555555554444444444555555555443222222221 12444444455554444443221   222222


Q ss_pred             hhhcCCccccccc-----ccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccC
Q 019924          164 MMHGNNISVEVDY-----MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH  238 (334)
Q Consensus       164 L~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  238 (334)
                      |+.++...+.+..     +........+....+.+..+....+..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus       209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence            2222222111111     11111122222222234444555666789999999999999987788889999999999999


Q ss_pred             CccCCCCCC
Q 019924          239 NNLTGLCGF  247 (334)
Q Consensus       239 N~l~~l~~~  247 (334)
                      |++.+.|..
T Consensus       289 Np~~CdC~l  297 (440)
T 3zyj_A          289 NPWNCNCDI  297 (440)
T ss_dssp             SCEECSSTT
T ss_pred             CCccCCCCc
Confidence            999887753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=2.1e-25  Score=214.68  Aligned_cols=238  Identities=20%  Similarity=0.202  Sum_probs=176.6

Q ss_pred             cCCCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCc-CccCCCCccE
Q 019924            4 LGIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPR-KFVKSCNLTS   67 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~   67 (334)
                      .++++|++|++++|.++.++.  ..+++|++|++++|             ++|++|++++|.+.+.+|. .+..+++|++
T Consensus       275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            357899999999999987765  56788999999988             6789999999988865554 4888889999


Q ss_pred             EeCCCCccccCC--CccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEec
Q 019924           68 LNLNGNRLEGPL--PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS  145 (334)
Q Consensus        68 L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls  145 (334)
                      |++++|++++..  |..+.++++|++|++++|++.+..|..+..+++|++|++++|++++..+.. .+..+++|+.|+++
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLS  433 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECT
T ss_pred             EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECC
Confidence            999999888654  677888888999999998888877888888888888988888887665543 13778888888888


Q ss_pred             CCccccccchhhHHhHHhhhhcCCccccccc--------ccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCccc
Q 019924          146 HNEFTGVLLTGYLDNFKAMMHGNNISVEVDY--------MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF  217 (334)
Q Consensus       146 ~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  217 (334)
                      +|.+.+..+.. +..+++|+.++...+.+..        +........+....+.+.++.+..+..+++|+.|+|++|++
T Consensus       434 ~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          434 HSLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             TCCCBTTCTTT-TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccCCcCHHH-HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence            88887665533 5566666655554333221        12222333333333344455555666788888888888888


Q ss_pred             ccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          218 QGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       218 ~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ++..|+.+.+++.| .|++++|+++++
T Consensus       513 ~~~~~~~l~~l~~L-~L~L~~N~l~~~  538 (606)
T 3t6q_A          513 TSSSIEALSHLKGI-YLNLASNHISII  538 (606)
T ss_dssp             CGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred             CcCChhHhCccccc-EEECcCCccccc
Confidence            88888888888888 888888888753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=1.1e-24  Score=194.12  Aligned_cols=231  Identities=18%  Similarity=0.205  Sum_probs=159.7

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~   74 (334)
                      +++.++++++.++.++....+.++.|++++|             ++|++|++++|++++..|..|..+++|++|++++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            6778888888887766655667777887777             578899999999987778889999999999999998


Q ss_pred             cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc--cCCCCCCCCCCCCccEEEecCCccccc
Q 019924           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      ++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+..  ..+..  +..+++|+.|++++|.+++.
T Consensus       112 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG--GGGCTTCCEEECCSSCCCSC
T ss_pred             CC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh--ccCCCCcCEEECCCCccccC
Confidence            88 5565554  688889999888888777778888889999998888853  33333  37788888888888888754


Q ss_pred             cchhhHHhHHhhhhcCCcccc--cccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCC
Q 019924          153 LLTGYLDNFKAMMHGNNISVE--VDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL  230 (334)
Q Consensus       153 ~~~~~~~~l~~L~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  230 (334)
                      . .....+++.|...++.-..  ...+........+....+.+..+....+..+++|++|++++|+++ .+|..+..+++
T Consensus       187 ~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  264 (330)
T 1xku_A          187 P-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY  264 (330)
T ss_dssp             C-SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred             C-ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence            3 2323333333222221101  111222222223332223334444445566778888888888887 77777888888


Q ss_pred             CCeeeccCCccCCCC
Q 019924          231 LKGLNISHNNLTGLC  245 (334)
Q Consensus       231 L~~L~Ls~N~l~~l~  245 (334)
                      |+.|++++|+|+++.
T Consensus       265 L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          265 IQVVYLHNNNISAIG  279 (330)
T ss_dssp             CCEEECCSSCCCCCC
T ss_pred             cCEEECCCCcCCccC
Confidence            888888888887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=7.8e-25  Score=195.29  Aligned_cols=227  Identities=17%  Similarity=0.165  Sum_probs=171.7

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~   74 (334)
                      +++.++++++.++.++....++++.|++++|             ++|++|++++|++++..|..|..+++|++|++++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            6889999999998877766778889998888             678999999999998888999999999999999999


Q ss_pred             cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc--cCCCCCCCCCCCCccEEEecCCccccc
Q 019924           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      ++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.++.  ..+..+  ..+ +|+.|++++|.+++.
T Consensus       114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSBCSSC
T ss_pred             CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCCCCCcc
Confidence            98 5666554  799999999999998777788999999999999999853  344433  555 888999999988864


Q ss_pred             cchhhHHhHHhhhhcCCcccccc-----cccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhC
Q 019924          153 LLTGYLDNFKAMMHGNNISVEVD-----YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK  227 (334)
Q Consensus       153 ~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  227 (334)
                       +.....+++   .++...+.+.     .+........+....+.+..+....+..+++|+.|++++|+++ .+|..+..
T Consensus       188 -~~~~~~~L~---~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          188 -PKDLPETLN---ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             -CSSSCSSCS---CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             -CccccCCCC---EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence             333333333   3333222221     2222333334444444455566666677888999999999998 78888888


Q ss_pred             cCCCCeeeccCCccCCCC
Q 019924          228 LNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       228 l~~L~~L~Ls~N~l~~l~  245 (334)
                      +++|+.|++++|+++++.
T Consensus       263 l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             CTTCCEEECCSSCCCBCC
T ss_pred             CccCCEEECCCCCCCccC
Confidence            999999999999887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=2.9e-24  Score=184.02  Aligned_cols=181  Identities=20%  Similarity=0.195  Sum_probs=156.8

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l   86 (334)
                      ++.++++++++.++.++..-.++           ++.|++++|++++..+..|..+++|++|++++|++++..|..|.++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~~~-----------l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   82 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIPAD-----------TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL   82 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCCTT-----------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             CCCeEEecCCCCccccCCCCCCC-----------CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence            45789999999999877643333           3788999999998888899999999999999999998888889999


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      ++|++|++++|++++..+..|..+++|++|++++|++++..+..+  ..+++|+.|++++|.+++..+.. +        
T Consensus        83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~--------  151 (251)
T 3m19_A           83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQSIPAGA-F--------  151 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-T--------
T ss_pred             CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCcCCccCHHH-c--------
Confidence            999999999999999888889999999999999999986655544  78999999999999998654422 1        


Q ss_pred             cCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                                                         ..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus       152 -----------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          152 -----------------------------------DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             -----------------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             -----------------------------------CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                                               1267899999999999987788899999999999999999876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=2.2e-25  Score=203.23  Aligned_cols=229  Identities=20%  Similarity=0.148  Sum_probs=130.6

Q ss_pred             cCCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccE
Q 019924            4 LGIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS   67 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   67 (334)
                      ..++++++|++++|.++.+++   ..+++|+.|++++|             ++|++|++++|++++..|..|..+++|++
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            356788888888888887766   34667777777666             56777777777777666677777777777


Q ss_pred             EeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCC
Q 019924           68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN  147 (334)
Q Consensus        68 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  147 (334)
                      |++++|+++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|++++..     +..+++|+.|++++|
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN  196 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-----cccccccceeecccc
Confidence            777777777444444577777777777777777766666777777777777777775431     134455555555555


Q ss_pred             ccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc-hhhhhhhhheeEEEccCcccccCCchhhh
Q 019924          148 EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVG  226 (334)
Q Consensus       148 ~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  226 (334)
                      .+++....   ..   +..++.....+...+.. ....+..+.+..+.+. ...+..+++|++|++++|.+++..|..+.
T Consensus       197 ~l~~~~~~---~~---L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          197 LLSTLAIP---IA---VEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             CCSEEECC---SS---CSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cccccCCC---Cc---ceEEECCCCeeeecccc-ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            54432111   11   11111111111111000 0011111111111111 12334455666666666666655566666


Q ss_pred             CcCCCCeeeccCCccCCC
Q 019924          227 KLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       227 ~l~~L~~L~Ls~N~l~~l  244 (334)
                      .+++|+.|++++|+++++
T Consensus       270 ~l~~L~~L~L~~n~l~~~  287 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVAL  287 (390)
T ss_dssp             TCSSCCEEECCSSCCCEE
T ss_pred             ccccCCEEECCCCcCccc
Confidence            666666666666666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=6.9e-26  Score=200.46  Aligned_cols=198  Identities=21%  Similarity=0.306  Sum_probs=117.5

Q ss_pred             CCEEeCCCCcCcc--ccCcCccCCCCccEEeCCC-CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924           41 HKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI  117 (334)
Q Consensus        41 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  117 (334)
                      ++.|++++|.+++  .+|..|..+++|++|++++ |.+++.+|..|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            3555666666655  5555566666666666653 555555555566666666666666666555555555666666666


Q ss_pred             eecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHH-hhhhcCCcccccc-----cccCCCCCCceeeEEE
Q 019924          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK-AMMHGNNISVEVD-----YMTPLNSSNYYESIIL  191 (334)
Q Consensus       118 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~~~~~~~~~~-----~~~~~~~~~~l~~~~~  191 (334)
                      +++|++++.+|..+  ..+++|++|++++|.+++.+|.. +..+. .|+.++...+.+.     .+.... ...+....+
T Consensus       132 Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          132 FSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             CCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             CCCCccCCcCChHH--hcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            66666555555443  55556666666666655544433 22232 3333333222111     111111 223333333


Q ss_pred             EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       192 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                      .+.+.....+..+++|+.|+|++|.+++.+|. +..+++|++|++++|++++
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence            45555566677789999999999999976665 8889999999999999984

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=7.9e-25  Score=196.88  Aligned_cols=219  Identities=15%  Similarity=0.097  Sum_probs=144.5

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCC
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN   71 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~   71 (334)
                      .++.....+++++.++.++..-.++|+.|++++|             ++|++|++++|++++..|..|.++++|++|+++
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            3456667899999999887766677877777776             567777777777776666677777777777777


Q ss_pred             CCccccCCCccccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeeccc-CcccCCCCCCCCCCCCccEEEecCCcc
Q 019924           72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus        72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      +|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +.+..+..+  ..+++|+.|++++|.+
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDL  186 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTC
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCCCCCCEEECCCCCc
Confidence            777774444446777777777777777776433 366677777777777773 443334433  6677777777777777


Q ss_pred             ccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccC---------
Q 019924          150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG---------  220 (334)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------  220 (334)
                      .+..+.. +..+++|+.++.                   ....+..++......+++|+.|++++|.+++.         
T Consensus       187 ~~~~~~~-l~~l~~L~~L~l-------------------~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  246 (353)
T 2z80_A          187 QSYEPKS-LKSIQNVSHLIL-------------------HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE  246 (353)
T ss_dssp             CEECTTT-TTTCSEEEEEEE-------------------ECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred             CccCHHH-HhccccCCeecC-------------------CCCccccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence            6654432 333333322221                   11111222333344567788888888877753         


Q ss_pred             ----------------------CchhhhCcCCCCeeeccCCccCCCC
Q 019924          221 ----------------------IPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       221 ----------------------~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                                            +|+.+..+++|+.|++++|+++.+.
T Consensus       247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~  293 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP  293 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC
T ss_pred             ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC
Confidence                                  4566788999999999999988554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=4e-25  Score=213.68  Aligned_cols=146  Identities=23%  Similarity=0.213  Sum_probs=110.7

Q ss_pred             CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC---------------------CCCCEEeCCCCcCccccCc--C
Q 019924            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPR--K   58 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n---------------------~~L~~L~Ls~N~l~~~~p~--~   58 (334)
                      ++++|++|++++|.+.+..|   ..+++|+.|++++|                     ++|++|++++|+++ .+|.  .
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            68999999999999888777   56778899999888                     47899999999998 7887  8


Q ss_pred             ccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCC-CCEEEeecccCcccCCCCCCCCCCC
Q 019924           59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPFP  137 (334)
Q Consensus        59 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~  137 (334)
                      ++.+++|++|++++|++++.+| .+.++++|++|++++|+++. +|..+..+++ |++|++++|+++ .+|..+....++
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~  402 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS  402 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence            8899999999999999887777 77777778888888877773 6666777777 777777777775 455544222233


Q ss_pred             CccEEEecCCccccccc
Q 019924          138 SLRIIDLSHNEFTGVLL  154 (334)
Q Consensus       138 ~L~~L~Ls~N~l~~~~~  154 (334)
                      +|+.|++++|.+++..|
T Consensus       403 ~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             CEEEEECCSSCTTTTTT
T ss_pred             ccCEEECcCCcCCCcch
Confidence            56666666666555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=4.7e-24  Score=198.14  Aligned_cols=213  Identities=19%  Similarity=0.105  Sum_probs=148.8

Q ss_pred             ccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcc
Q 019924            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL   75 (334)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l   75 (334)
                      ...++.+++.++.++..-.++++.|++++|             ++|++|+|++|++++..|..|.++++|++|+|++|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            467888999898877766677777777776             5677777777777766667777777777777777777


Q ss_pred             ccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccch
Q 019924           76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT  155 (334)
Q Consensus        76 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  155 (334)
                      +...+..|.++++|++|++++|+++...+..|..+++|++|++++|...+.++.. .+..+++|+.|++++|.+++... 
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~-  213 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKDMPN-  213 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSSCCC-
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCccccccc-
Confidence            7555556777777777777777777665666777777777777774433333332 23667777777777777765422 


Q ss_pred             hhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeee
Q 019924          156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN  235 (334)
Q Consensus       156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  235 (334)
                        +..+.+|..++.                   ..+.+.++....+..+++|+.|+|++|++++..|..|..+++|+.|+
T Consensus       214 --~~~l~~L~~L~L-------------------s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  272 (452)
T 3zyi_A          214 --LTPLVGLEELEM-------------------SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN  272 (452)
T ss_dssp             --CTTCTTCCEEEC-------------------TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             --ccccccccEEEC-------------------cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence              222233322222                   11223344556667789999999999999988899999999999999


Q ss_pred             ccCCccCCC
Q 019924          236 ISHNNLTGL  244 (334)
Q Consensus       236 Ls~N~l~~l  244 (334)
                      |++|+++++
T Consensus       273 L~~N~l~~~  281 (452)
T 3zyi_A          273 LAHNNLSSL  281 (452)
T ss_dssp             CCSSCCSCC
T ss_pred             CCCCcCCcc
Confidence            999999854

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=6e-24  Score=189.34  Aligned_cols=237  Identities=15%  Similarity=0.105  Sum_probs=143.7

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      +++++|++++|.++++++   ..+++|++|++++|             ++|++|++++|+++ .+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            456777777777776655   44566777777766             46677777777776 4444443  56777777


Q ss_pred             CCCccccCCCccccCCCCCCEEEccCCcCCc--CCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924           71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (334)
Q Consensus        71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  148 (334)
                      ++|++++..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|+++. ++...    .++|+.|++++|.
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~----~~~L~~L~l~~n~  203 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL----PPSLTELHLDGNK  203 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC----CTTCSEEECTTSC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc----cccCCEEECCCCc
Confidence            7777775555566777777777777777643  455666677777777777776643 33322    2566677777776


Q ss_pred             cccccchhhHHhHHhhhhcCCcccccccc-----cCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCch
Q 019924          149 FTGVLLTGYLDNFKAMMHGNNISVEVDYM-----TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE  223 (334)
Q Consensus       149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  223 (334)
                      +++..+.. +..+++|+.++...+.+...     ........+....+.+..++. .+..+++|++|++++|++++..+.
T Consensus       204 l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          204 ITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             CCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-hhccCCCcCEEECCCCcCCccChh
Confidence            66554322 44555555444433322221     111222222222222333332 234578999999999999977666


Q ss_pred             hhhC------cCCCCeeeccCCccCCCCCCCccCCC
Q 019924          224 VVGK------LNLLKGLNISHNNLTGLCGFPLLESC  253 (334)
Q Consensus       224 ~l~~------l~~L~~L~Ls~N~l~~l~~~~~~~~c  253 (334)
                      .|..      .+.++.|++++|++...+..|....|
T Consensus       282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~  317 (330)
T 1xku_A          282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  317 (330)
T ss_dssp             SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             hcCCcccccccccccceEeecCcccccccCcccccc
Confidence            6643      47889999999998765544433333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=7.8e-25  Score=210.64  Aligned_cols=239  Identities=14%  Similarity=0.117  Sum_probs=147.4

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-----------CCCCEEeCCCCcCccc--cCcCccCCCCccEEeCC
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLN   71 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~   71 (334)
                      .+++|++|++++|.++.++...+++|+.|++++|           ++|++|++++|++++.  .|..+..+++|++|+++
T Consensus       305 ~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~  384 (606)
T 3vq2_A          305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS  384 (606)
T ss_dssp             TTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred             ccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence            4456777777777775544345666777777766           5777777777777754  36667777777777777


Q ss_pred             CCccccCCCccccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924           72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      +|.+++ +|..+.++++|++|++++|++.+..| ..+..+++|++|++++|++++..+..+  ..+++|+.|++++|.++
T Consensus       385 ~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~  461 (606)
T 3vq2_A          385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFK  461 (606)
T ss_dssp             SCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEG
T ss_pred             CCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCC
Confidence            777763 55667777777777777777776655 566777777777777777766666554  67777777777777777


Q ss_pred             cccchhhHHhHHhhhhcCCcccccccc-----cCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhh
Q 019924          151 GVLLTGYLDNFKAMMHGNNISVEVDYM-----TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV  225 (334)
Q Consensus       151 ~~~~~~~~~~l~~L~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  225 (334)
                      +......+..+++|+.++...+.+...     ........+....+.+.++.+..+..+++|+.|++++|+++ .+|..+
T Consensus       462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~  540 (606)
T 3vq2_A          462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL  540 (606)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred             CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence            632223355555555554433322211     11112222222222233333444455666667777777666 555556


Q ss_pred             hCcC-CCCeeeccCCccCCCCCC
Q 019924          226 GKLN-LLKGLNISHNNLTGLCGF  247 (334)
Q Consensus       226 ~~l~-~L~~L~Ls~N~l~~l~~~  247 (334)
                      ..++ +|+.|++++|++.+.|..
T Consensus       541 ~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          541 QHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             GGSCTTCCEEECCSCCCCCSSTT
T ss_pred             hhhcccCcEEEccCCCcccCCcc
Confidence            6665 467777777766665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=4.6e-24  Score=194.43  Aligned_cols=228  Identities=18%  Similarity=0.226  Sum_probs=146.1

Q ss_pred             CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   68 (334)
                      ++++|++|++++|.++++++   ..+++|++|++++|             ++|++|++++|+++...+..|..+++|++|
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            57899999999999988776   56788999999988             679999999999996555567999999999


Q ss_pred             eCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCccc------------------CCCC
Q 019924           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP------------------IGEN  130 (334)
Q Consensus        69 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~------------------~~~~  130 (334)
                      ++++|++++..|..+.++++|++|++++|++++..   +..+++|+.|++++|.+++.                  ++. 
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~-  222 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-  222 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC-
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccc-
Confidence            99999999888888999999999999999998753   33445554444444443221                  111 


Q ss_pred             CCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccc-----cCCCCCCceeeEEEEEeccchhhhhhhh
Q 019924          131 TTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM-----TPLNSSNYYESIILTIKGIDIKMERILT  205 (334)
Q Consensus       131 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~l~  205 (334)
                         ...++|+.|++++|.+++.   ..+..+++|..++...+.+...     ........+....+.+..++.. ...++
T Consensus       223 ---~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~  295 (390)
T 3o6n_A          223 ---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIP  295 (390)
T ss_dssp             ---CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSCCT
T ss_pred             ---cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCCCC
Confidence               1234566666666666654   2244444444444432222111     1111111111111112222111 12356


Q ss_pred             heeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       206 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      +|+.|++++|+++ .+|..+..+++|+.|++++|+++++
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence            6777777777776 5566666677777777777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=2.8e-24  Score=209.48  Aligned_cols=242  Identities=19%  Similarity=0.216  Sum_probs=159.0

Q ss_pred             cCCCcccEEEcCCCCCCCC--CCC-----CCCCCCeEECCCC-------------CCCCEEeCCCCcCccccC-cCccCC
Q 019924            4 LGIATLYYLDLSNNFLTNI--EYF-----PPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIP-RKFVKS   62 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~--~~~-----~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p-~~~~~l   62 (334)
                      .++++|++|++++|.++..  +..     ..++|+.|++++|             ++|++|++++|++++.+| ..|.++
T Consensus       350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l  429 (680)
T 1ziw_A          350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL  429 (680)
T ss_dssp             TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred             ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence            3567777777777764322  111     1246677777666             567777777777765544 567777


Q ss_pred             CCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCC--cCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCcc
Q 019924           63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLR  140 (334)
Q Consensus        63 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  140 (334)
                      ++|++|++++|++++..+..|..+++|+.|++++|.+.  +..|..+..+++|++|++++|++++..+..+  ..+++|+
T Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~  507 (680)
T 1ziw_A          430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EGLEKLE  507 (680)
T ss_dssp             TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCC
T ss_pred             ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh--ccccccC
Confidence            77777777777777666667777777777777777665  3456666777777777777777765444433  6667777


Q ss_pred             EEEecCCccccccch-------hhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEEEeccchhhhhhhhhee
Q 019924          141 IIDLSHNEFTGVLLT-------GYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILTIKGIDIKMERILTIFM  208 (334)
Q Consensus       141 ~L~Ls~N~l~~~~~~-------~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~  208 (334)
                      .|++++|.+++....       ..+..+++|+.++...+.+..++     .......+....+.+..++...+..+++|+
T Consensus       508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  587 (680)
T 1ziw_A          508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK  587 (680)
T ss_dssp             EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence            777777776654211       12444555554444333332222     222223333333345566667777789999


Q ss_pred             EEEccCcccccCCchhhh-CcCCCCeeeccCCccCCCCCC
Q 019924          209 TIDLSSNKFQGGIPEVVG-KLNLLKGLNISHNNLTGLCGF  247 (334)
Q Consensus       209 ~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~l~~~  247 (334)
                      .|+|++|++++..|..+. .+++|+.|++++|++.+-|..
T Consensus       588 ~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999988888887 789999999999999988874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=5.4e-24  Score=197.10  Aligned_cols=223  Identities=18%  Similarity=0.127  Sum_probs=180.2

Q ss_pred             ccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCC
Q 019924            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (334)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~   88 (334)
                      .+.++.+++.++.++..-.+           ++++|+|++|++++..+..|.++++|++|++++|++++..+..|.++++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~-----------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~  113 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIST-----------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN  113 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCT-----------TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred             CCEEEeCCCCcCcCCCCCCC-----------CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence            45677777777766553333           3478899999999888899999999999999999999888889999999


Q ss_pred             CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcC
Q 019924           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN  168 (334)
Q Consensus        89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~  168 (334)
                      |++|++++|+++...+..|..+++|++|++++|++++..+..+  ..+++|+.|++++|...+.++...+.++++|+.++
T Consensus       114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            9999999999999777789999999999999999976655545  88999999999996655566666677888887777


Q ss_pred             CcccccccccCCCCCCceeeEEE---EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          169 NISVEVDYMTPLNSSNYYESIIL---TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ...+.+..++.......++.+++   .+..+....+..+++|+.|+|++|++++..+..|.++++|+.|+|++|+++++
T Consensus       192 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          192 LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             CTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            65555555544444344444443   44455566777899999999999999988899999999999999999999853

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=1.8e-24  Score=206.34  Aligned_cols=136  Identities=16%  Similarity=0.158  Sum_probs=93.2

Q ss_pred             hcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc-hhhHHhHHhhhhcCCccccccc-ccC--CCCC
Q 019924          108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL-TGYLDNFKAMMHGNNISVEVDY-MTP--LNSS  183 (334)
Q Consensus       108 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~~~~~~~~~~~-~~~--~~~~  183 (334)
                      ..+++|++|++++|++++..+..+  ..+++|+.|++++|++++... ...+..+++|+.++...+.+.. ++.  ....
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence            567889999999999988777766  888999999999999987532 1235666666666554444333 221  1223


Q ss_pred             CceeeEEEEEeccchhhhhhh-hheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924          184 NYYESIILTIKGIDIKMERIL-TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~  246 (334)
                      ..++.+.+..+.+....+..+ ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++++..
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~  490 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD  490 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCT
T ss_pred             ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCH
Confidence            344455555555544444444 58888888888887 677777788888888888888876543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=4.6e-24  Score=191.30  Aligned_cols=228  Identities=19%  Similarity=0.236  Sum_probs=162.7

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      ++++|++|++++|.+++++. ..+++|++|++++|           ++|++|++++|.....++ .+..+++|++|++++
T Consensus        86 ~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~  164 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTE  164 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCS
T ss_pred             cCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecC
Confidence            57888999999998887654 67788888888888           678888888886654433 478888888888888


Q ss_pred             CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      |.+++..+  +..+++|++|++++|.+.+.. . +..+++|+.|++++|.+++..+    +..+++|+.|++++|.+++.
T Consensus       165 ~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~  236 (347)
T 4fmz_A          165 SKVKDVTP--IANLTDLYSLSLNYNQIEDIS-P-LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDL  236 (347)
T ss_dssp             SCCCCCGG--GGGCTTCSEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC
T ss_pred             CCcCCchh--hccCCCCCEEEccCCcccccc-c-ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCC
Confidence            88874432  778888888888888887743 3 7778888888888888754433    36677888888888887765


Q ss_pred             cchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEE---EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924          153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL---TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN  229 (334)
Q Consensus       153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  229 (334)
                      .+   +..+++|+.++...+.+..+........++.+.+   .+..+  ..+..+++|+.|++++|.+++..|..+..++
T Consensus       237 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  311 (347)
T 4fmz_A          237 SP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT  311 (347)
T ss_dssp             GG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred             cc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence            44   4455555544443333322222222222333332   23333  3456688999999999999988889999999


Q ss_pred             CCCeeeccCCccCCCCC
Q 019924          230 LLKGLNISHNNLTGLCG  246 (334)
Q Consensus       230 ~L~~L~Ls~N~l~~l~~  246 (334)
                      +|+.|++++|+++++..
T Consensus       312 ~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          312 NLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             TCSEEECCSSSCCCCGG
T ss_pred             cCCEEEccCCccccccC
Confidence            99999999999987644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=4.9e-24  Score=201.45  Aligned_cols=39  Identities=38%  Similarity=0.567  Sum_probs=23.8

Q ss_pred             hheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       205 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ++|+.|++++|+++ .+|..+..+++|+.|++++|+++++
T Consensus       421 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l  459 (520)
T 2z7x_B          421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV  459 (520)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc
Confidence            45666666666665 5555555666666666666666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=2.6e-24  Score=204.60  Aligned_cols=125  Identities=23%  Similarity=0.199  Sum_probs=94.3

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      ++|++|++++|.++++++   ..+++|++|++++|             ++|++|++++|++++..|..|+++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            578888888888887765   55677888888877             57888888888888776667888888888888


Q ss_pred             CCCccccC-CCccccCCCCCCEEEccCCc-CCcCCChhhhcCCCCCEEEeecccCcccCCCCC
Q 019924           71 NGNRLEGP-LPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENT  131 (334)
Q Consensus        71 ~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  131 (334)
                      ++|++++. .|..+.++++|++|++++|. ++...+..+..+++|++|++++|++++..+..+
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            88888752 45677888888888888887 444334567778888888888888776665544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.8e-23  Score=181.20  Aligned_cols=183  Identities=19%  Similarity=0.169  Sum_probs=144.8

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      .+++|+.|++++|.++....  +..+        ++|++|++++|++++.  ..+..+++|++|++++|++++..+..+.
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~--l~~l--------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~  106 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQG--IQYL--------PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD  106 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cccceeeeeeCCCCcccccc--cccC--------CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhc
Confidence            45788889999888876542  2222        4458888888888853  4788889999999999999877777788


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  164 (334)
                      ++++|++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|+.|++++|.+++..+.. +      
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~------  177 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQLQSLPEGV-F------  177 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-T------
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh--ccCccCCEEECCCCCcCccCHHH-h------
Confidence            89999999999999988777778889999999999999876655544  77889999999999888654321 1      


Q ss_pred             hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                                                           ..+++|+.|++++|++++..|..+..+++|+.|++++|++++.
T Consensus       178 -------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          178 -------------------------------------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             -------------------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             -------------------------------------cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence                                                 1257788999999999887777788899999999999988765


Q ss_pred             C
Q 019924          245 C  245 (334)
Q Consensus       245 ~  245 (334)
                      |
T Consensus       221 ~  221 (272)
T 3rfs_A          221 C  221 (272)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=9.2e-25  Score=209.76  Aligned_cols=229  Identities=20%  Similarity=0.146  Sum_probs=126.7

Q ss_pred             cCCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccE
Q 019924            4 LGIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS   67 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~   67 (334)
                      ..+++++.+++++|.++.+++   ..+++|+.|++++|             ++|++|+|++|.+++..|..|+++++|++
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            345778888888888887776   34556666665555             35566666666666655556666666666


Q ss_pred             EeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCC
Q 019924           68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN  147 (334)
Q Consensus        68 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  147 (334)
                      |++++|.+++..+..|.++++|++|++++|.+++..|..|+.+++|++|++++|.+++..     +..+++|+.|++++|
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccC
Confidence            666666666444444566666666666666666655556666666666666666664321     244566666666666


Q ss_pred             ccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc-hhhhhhhhheeEEEccCcccccCCchhhh
Q 019924          148 EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVG  226 (334)
Q Consensus       148 ~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  226 (334)
                      .+.+....   ..   +..++...+.+..+.... ...+..+.+..+.+. ...+..+++|+.|+|++|.+++.+|..+.
T Consensus       203 ~l~~l~~~---~~---L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          203 LLSTLAIP---IA---VEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             CCSEEECC---TT---CSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ccccccCC---ch---hheeeccCCccccccccc-CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            65543211   11   222221111111111100 011222222111111 13344566777777777777766677777


Q ss_pred             CcCCCCeeeccCCccCCC
Q 019924          227 KLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       227 ~l~~L~~L~Ls~N~l~~l  244 (334)
                      .+++|+.|+|++|+++++
T Consensus       276 ~l~~L~~L~Ls~N~l~~l  293 (597)
T 3oja_B          276 KMQRLERLYISNNRLVAL  293 (597)
T ss_dssp             TCSSCCEEECTTSCCCEE
T ss_pred             CccCCCEEECCCCCCCCC
Confidence            777777777777766643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.4e-25  Score=198.37  Aligned_cols=189  Identities=22%  Similarity=0.209  Sum_probs=114.4

Q ss_pred             CCCcccEEEcCCCCCCCCCCC-----CCCCCCeEECCCC-----------------CCCCEEeCCCCcCccccCcCccCC
Q 019924            5 GIATLYYLDLSNNFLTNIEYF-----PPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKS   62 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~-----~~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~~p~~~~~l   62 (334)
                      ++++|++|++++|.+++..|.     .+++|++|++++|                 ++|++|++++|++++..|..|..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            578999999999999876553     3455666665555                 245666666666655555556666


Q ss_pred             CCccEEeCCCCccccC--CCccc--cCCCCCCEEEccCCcCCcC---CChhhhcCCCCCEEEeecccCcccCCCCCCCCC
Q 019924           63 CNLTSLNLNGNRLEGP--LPPSL--VNCHHLEVLNVGNNQINDN---FPNWLEILPELQVLILRSNRFWGPIGENTTIVP  135 (334)
Q Consensus        63 ~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~~---~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  135 (334)
                      ++|++|++++|++.+.  .|..+  .++++|++|++++|++++.   ....+..+++|++|++++|++++..+... +..
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~  251 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDW  251 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhh
Confidence            6666666666655432  12222  5555666666666655521   11223345566666666666554442211 134


Q ss_pred             CCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCc
Q 019924          136 FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSN  215 (334)
Q Consensus       136 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  215 (334)
                      +++|+.|++++|.++. +|..                                           .   .++|+.|||++|
T Consensus       252 l~~L~~L~Ls~N~l~~-ip~~-------------------------------------------~---~~~L~~L~Ls~N  284 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQ-VPKG-------------------------------------------L---PAKLSVLDLSYN  284 (312)
T ss_dssp             CTTCCEEECTTSCCSS-CCSS-------------------------------------------C---CSEEEEEECCSS
T ss_pred             cCCCCEEECCCCccCh-hhhh-------------------------------------------c---cCCceEEECCCC
Confidence            5556666666665552 2211                                           1   156889999999


Q ss_pred             ccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          216 KFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       216 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                      ++++. |. +..+++|+.|++++|++++
T Consensus       285 ~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          285 RLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            99855 65 8889999999999998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=2.7e-24  Score=189.53  Aligned_cols=213  Identities=16%  Similarity=0.161  Sum_probs=153.7

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccc--cCcCccCCCCccEEeCCCCc
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLNGNR   74 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~n~   74 (334)
                      +.++++++.++.++....++++.|++++|             ++|++|++++|+++..  .|..+..+++|++|++++|.
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            57899999999888777788888888877             5788888888888732  35666678888888888888


Q ss_pred             cccCCCccccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus        75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      ++ .+|..+.++++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+  ..+++|+.|++++|.+.+..
T Consensus        90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGE
T ss_pred             cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCcccccc
Confidence            87 466678888888888888888877544 567788888888888888876666655  77888888888888887632


Q ss_pred             chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCe
Q 019924          154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG  233 (334)
Q Consensus       154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  233 (334)
                      ....+..+++|+.++...+                   .+..+....+..+++|+.|+|++|++++..+..+..+++|+.
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n-------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQC-------------------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTS-------------------CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             chhHHhhCcCCCEEECCCC-------------------CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence            2233444444444333221                   122233344445678888888888888766667788888888


Q ss_pred             eeccCCccCCC
Q 019924          234 LNISHNNLTGL  244 (334)
Q Consensus       234 L~Ls~N~l~~l  244 (334)
                      |++++|++++.
T Consensus       228 L~L~~N~l~~~  238 (306)
T 2z66_A          228 LDYSLNHIMTS  238 (306)
T ss_dssp             EECTTSCCCBC
T ss_pred             eECCCCCCccc
Confidence            88888887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.1e-23  Score=188.84  Aligned_cols=226  Identities=21%  Similarity=0.249  Sum_probs=175.5

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      .+++|++|++++|.++++++ ..+++|++|++++|           ++|++|++++|++++. +. +..+++|++|++++
T Consensus        64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGA  141 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTT
T ss_pred             hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCC
Confidence            57899999999999998876 77899999999998           7899999999999854 33 88999999999999


Q ss_pred             CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      |.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+    +..+++|+.|++++|.+.+.
T Consensus       142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCC
Confidence            97664444 58999999999999999987443  8899999999999999865433    37899999999999999876


Q ss_pred             cchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccch-hhhhhhhheeEEEccCcccccCCchhhhCcCCC
Q 019924          153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL  231 (334)
Q Consensus       153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  231 (334)
                      .+   +..+++|+.++...+.+...........++.+.+..+.+.. ..+..+++|+.|++++|.+++.  +.+..+++|
T Consensus       215 ~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L  289 (347)
T 4fmz_A          215 TP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL  289 (347)
T ss_dssp             GG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             ch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence            55   55556665555544433333333333333333333332221 3456689999999999999854  468899999


Q ss_pred             CeeeccCCccCCC
Q 019924          232 KGLNISHNNLTGL  244 (334)
Q Consensus       232 ~~L~Ls~N~l~~l  244 (334)
                      +.|++++|++++.
T Consensus       290 ~~L~L~~n~l~~~  302 (347)
T 4fmz_A          290 NSLFLNNNQLGNE  302 (347)
T ss_dssp             SEEECCSSCCCGG
T ss_pred             CEEECcCCcCCCc
Confidence            9999999999754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=2.4e-24  Score=214.68  Aligned_cols=123  Identities=20%  Similarity=0.181  Sum_probs=103.1

Q ss_pred             CCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC--------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924            6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   68 (334)
                      .+++++|||++|.++++.+   ..+++|++|++++|              ++|++|+|++|.+++..|..|.++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            4788999999999988766   56788889998888              578999999999998889999999999999


Q ss_pred             eCCCCccccCCCcc--ccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCC
Q 019924           69 NLNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIG  128 (334)
Q Consensus        69 ~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~  128 (334)
                      ++++|.+++..|..  +.++++|++|++++|.+++..+ ..|+.+++|++|++++|.+++..+
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            99999998766554  8889999999999999887654 578889999999999988765433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=205.64  Aligned_cols=136  Identities=16%  Similarity=0.176  Sum_probs=81.6

Q ss_pred             hcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc-hhhHHhHHhhhhcCCccccccc-cc-----C-
Q 019924          108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL-TGYLDNFKAMMHGNNISVEVDY-MT-----P-  179 (334)
Q Consensus       108 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~~~~~~~~~~~-~~-----~-  179 (334)
                      ..+++|++|++++|++++..+..+  ..+++|+.|++++|++++... ...+..+++|+.++...+.+.. ++     . 
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l  398 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT  398 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred             hhCCcccEEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence            455667777777777766555544  666677777777776664211 1224444444444332222111 10     0 


Q ss_pred             --------------------C-CCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchh-hhCcCCCCeeecc
Q 019924          180 --------------------L-NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV-VGKLNLLKGLNIS  237 (334)
Q Consensus       180 --------------------~-~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls  237 (334)
                                          . .....+....+.+..++.... .+++|++|++++|+++ .+|.. +..+++|+.|+++
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             ccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence                                0 111222222223334444444 6899999999999999 56655 8999999999999


Q ss_pred             CCccCCCCCC
Q 019924          238 HNNLTGLCGF  247 (334)
Q Consensus       238 ~N~l~~l~~~  247 (334)
                      +|++++.|..
T Consensus       477 ~N~~~c~c~~  486 (520)
T 2z7x_B          477 TNPWDCSCPR  486 (520)
T ss_dssp             SSCBCCCHHH
T ss_pred             CCCCcccCCc
Confidence            9999987753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=4.5e-24  Score=204.94  Aligned_cols=232  Identities=17%  Similarity=0.206  Sum_probs=166.6

Q ss_pred             CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   68 (334)
                      ++++|++|++++|.++++++   ..+++|+.|++++|             ++|++|+|++|.+++..+..|..+++|++|
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            47899999999999998876   56788999999988             689999999999997766778999999999


Q ss_pred             eCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCC-CC-------------CCC
Q 019924           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGE-NT-------------TIV  134 (334)
Q Consensus        69 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~-------------~~~  134 (334)
                      ++++|.+++..|..|.++++|++|++++|.+++..   +..+++|+.|++++|.+++.... .+             ...
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            99999999888889999999999999999998853   34556666666666655431100 00             001


Q ss_pred             CCCCccEEEecCCccccccchhhHHhHHhhhhcCCccccccc-----ccCCCCCCceeeEEEEEeccchhhhhhhhheeE
Q 019924          135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDY-----MTPLNSSNYYESIILTIKGIDIKMERILTIFMT  209 (334)
Q Consensus       135 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  209 (334)
                      ..++|+.|++++|.+++.   ..+..++.|..++...+.+..     +........+....+.+.+++. ....+++|+.
T Consensus       230 ~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~  305 (597)
T 3oja_B          230 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKV  305 (597)
T ss_dssp             CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCE
T ss_pred             cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcE
Confidence            235788888888888764   335666666665554433322     2222222222222222223222 2234778999


Q ss_pred             EEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       210 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      |+|++|.++ .+|..+..+++|+.|++++|+++++
T Consensus       306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc
Confidence            999999988 6787888889999999999988765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=2.1e-23  Score=185.97  Aligned_cols=231  Identities=16%  Similarity=0.174  Sum_probs=146.6

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      ++|++|++++|.++++++   ..+++|+.|++++|             ++|++|++++|+++ .+|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            567788888888777655   45677777887777             57788888888877 4555444  67788888


Q ss_pred             CCCccccCCCccccCCCCCCEEEccCCcCCc--CCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924           71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (334)
Q Consensus        71 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  148 (334)
                      ++|++++..+..|.++++|++|++++|.++.  ..+..+..+ +|++|++++|++++ +|...    .++|+.|++++|.
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~----~~~L~~L~l~~n~  204 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL----PETLNELHLDHNK  204 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS----CSSCSCCBCCSSC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc----cCCCCEEECCCCc
Confidence            8888776555667777888888888887753  455666665 67777777777654 33322    2566666666666


Q ss_pred             cccccchhhHHhHHhhhhcCCccccccccc-----CCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCch
Q 019924          149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMT-----PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE  223 (334)
Q Consensus       149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  223 (334)
                      +++..+.. +..+++|+.++...+.+....     .......+....+.+..++.. +..+++|+.|++++|++++..+.
T Consensus       205 i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          205 IQAIELED-LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             CCCCCTTS-STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCCTT
T ss_pred             CCccCHHH-hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccChh
Confidence            66544322 444455544444333222221     112222222222233333333 45588999999999999977777


Q ss_pred             hhhC------cCCCCeeeccCCccCCCCCCC
Q 019924          224 VVGK------LNLLKGLNISHNNLTGLCGFP  248 (334)
Q Consensus       224 ~l~~------l~~L~~L~Ls~N~l~~l~~~~  248 (334)
                      .+..      .+.|+.|++++|+++.....|
T Consensus       283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             SSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             HccccccccccccccceEeecCcccccccCc
Confidence            6655      367899999999987544433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=1.4e-23  Score=207.52  Aligned_cols=143  Identities=19%  Similarity=0.200  Sum_probs=119.1

Q ss_pred             CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCCC----------------------CCCEEeCCCCcCccccCc--
Q 019924            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNL----------------------THKVLDMRMNNFNGKIPR--   57 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n~----------------------~L~~L~Ls~N~l~~~~p~--   57 (334)
                      ++++|++|+|++|.+.+..|   ..+++|+.|++++|.                      +|++|++++|+++ .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            68999999999999888877   578899999999995                      8999999999999 8888  


Q ss_pred             CccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCC-CCEEEeecccCcccCCCCCCCCCC
Q 019924           58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPF  136 (334)
Q Consensus        58 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l  136 (334)
                      .|..+++|+.|++++|+++ .+| .|.++++|+.|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+.....
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~  643 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV  643 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence            8999999999999999998 778 8899999999999999998 57888888888 999999999986 56654422222


Q ss_pred             CCccEEEecCCccccc
Q 019924          137 PSLRIIDLSHNEFTGV  152 (334)
Q Consensus       137 ~~L~~L~Ls~N~l~~~  152 (334)
                      ++|+.|++++|.+.+.
T Consensus       644 ~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             SCEEEEECCSSCTTTT
T ss_pred             CCCCEEECcCCcCCCc
Confidence            3366666666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.3e-23  Score=180.61  Aligned_cols=178  Identities=21%  Similarity=0.159  Sum_probs=148.8

Q ss_pred             cCCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924            4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l   83 (334)
                      ..+++|++|++++|.+++..  .+..+        ++|++|++++|++++..+..|..+++|++|++++|++++..+..+
T Consensus        60 ~~l~~L~~L~l~~n~l~~~~--~l~~l--------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  129 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDIS--ALKEL--------TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF  129 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCCG--GGTTC--------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             ccCCCCcEEECCCCCCCCch--hhcCC--------CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh
Confidence            35799999999999998753  23333        445999999999998888889999999999999999998777789


Q ss_pred             cCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHh
Q 019924           84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA  163 (334)
Q Consensus        84 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  163 (334)
                      .++++|++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|+.|++++|.+++..+.. +     
T Consensus       130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~-----  201 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF--DKLTQLKDLRLYQNQLKSVPDGV-F-----  201 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-T-----
T ss_pred             ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh--cCCccCCEEECCCCcCCccCHHH-H-----
Confidence            999999999999999999878888999999999999999987666544  78999999999999998765422 1     


Q ss_pred             hhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       164 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                                                            ..+++|+.|++++|.+.+.       ++.|+.|+++.|.++|
T Consensus       202 --------------------------------------~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          202 --------------------------------------DRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG  236 (272)
T ss_dssp             --------------------------------------TTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGG
T ss_pred             --------------------------------------hCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCC
Confidence                                                  1267789999999988754       4568889999998876


Q ss_pred             C
Q 019924          244 L  244 (334)
Q Consensus       244 l  244 (334)
                      .
T Consensus       237 ~  237 (272)
T 3rfs_A          237 V  237 (272)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=3.6e-23  Score=197.44  Aligned_cols=218  Identities=15%  Similarity=0.184  Sum_probs=164.3

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-----------CCCCEEeCCCCcCcccc--CcCccCCCCccEEeCC
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKI--PRKFVKSCNLTSLNLN   71 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~   71 (334)
                      ++ +|++|++++|.++.++...+++|+.|++++|           ++|++|++++|++++..  |..+..+++|++|+++
T Consensus       303 ~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  381 (570)
T 2z63_A          303 NF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS  381 (570)
T ss_dssp             CC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred             cC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence            44 7889999999988776677888888888776           67888999988888543  6778888888889998


Q ss_pred             CCccccCCCccccCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924           72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        72 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      +|++++. |..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..+..+  ..+++|+.|++++|.+.
T Consensus       382 ~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~  458 (570)
T 2z63_A          382 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQ  458 (570)
T ss_dssp             SCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEG
T ss_pred             CCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCc
Confidence            8888854 4448888888888888888877555 467788888888888888877766655  77888888888888886


Q ss_pred             -cccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924          151 -GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN  229 (334)
Q Consensus       151 -~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  229 (334)
                       +.+| ..+..+++|+.++...+                   .+.++.+..+..+++|++|++++|++++..|..+.+++
T Consensus       459 ~~~~p-~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          459 ENFLP-DIFTELRNLTFLDLSQC-------------------QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             GGEEC-SCCTTCTTCCEEECTTS-------------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             cccch-hhhhcccCCCEEECCCC-------------------ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence             3344 22444444444433221                   12223333444578899999999999987778888999


Q ss_pred             CCCeeeccCCccCCCCC
Q 019924          230 LLKGLNISHNNLTGLCG  246 (334)
Q Consensus       230 ~L~~L~Ls~N~l~~l~~  246 (334)
                      +|+.|++++|++++-|.
T Consensus       519 ~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          519 SLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TCCEEECCSSCBCCCTT
T ss_pred             CCcEEEecCCcccCCCc
Confidence            99999999999887664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=3.6e-24  Score=189.79  Aligned_cols=213  Identities=18%  Similarity=0.091  Sum_probs=110.6

Q ss_pred             CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCc
Q 019924            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP   81 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~   81 (334)
                      .+++|++|++++|.+++.++   ..+++|+.|++           ++|++++..+  +..+++|++|++++|++++. + 
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-----------s~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~-   96 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNL-----------SSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L-   96 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEEC-----------TTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E-
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEEC-----------CCCcCCcchh--hhhcCCCCEEECcCCccccc-c-
Confidence            35689999999999998876   44555555554           4444443322  44444455555555544421 1 


Q ss_pred             cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhH
Q 019924           82 SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNF  161 (334)
Q Consensus        82 ~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  161 (334)
                         ..++|++|++++|++++..+.   .+++|++|++++|++++..+..+  ..+++|+.|++++|.+++..+..+...+
T Consensus        97 ---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  168 (317)
T 3o53_A           97 ---VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASS  168 (317)
T ss_dssp             ---ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred             ---CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhcc
Confidence               124444444444444442222   23444444444444443333222  3444444444444444443333333333


Q ss_pred             HhhhhcCCcccccccccCCCCCCceeeEE---EEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccC
Q 019924          162 KAMMHGNNISVEVDYMTPLNSSNYYESII---LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH  238 (334)
Q Consensus       162 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  238 (334)
                      +.|+.++...+.+...........++.++   +.+..++.. +..+++|+.|+|++|+++ .+|..+..+++|+.|++++
T Consensus       169 ~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred             CcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence            33333333222222111111111122222   223333333 455788999999999988 5777888888999999999


Q ss_pred             CccC
Q 019924          239 NNLT  242 (334)
Q Consensus       239 N~l~  242 (334)
                      |+++
T Consensus       247 N~~~  250 (317)
T 3o53_A          247 NGFH  250 (317)
T ss_dssp             CCCB
T ss_pred             CCcc
Confidence            9887

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=3.2e-24  Score=207.35  Aligned_cols=234  Identities=18%  Similarity=0.202  Sum_probs=154.1

Q ss_pred             cCCCcccEEEcCCCCCCC------------------CCC--C--CCCCCCeEECCCC-------------CCCCEEeCCC
Q 019924            4 LGIATLYYLDLSNNFLTN------------------IEY--F--PPTNMTQLNFDSN-------------LTHKVLDMRM   48 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~------------------~~~--~--~~~~L~~L~l~~n-------------~~L~~L~Ls~   48 (334)
                      .++++|++|+|++|.+++                  ++.  .  .+++|++|++++|             ++|++|++++
T Consensus       203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            368999999999999999                  444  4  5777888887777             5777888888


Q ss_pred             Cc-Ccc-ccCcCccCC------CCccEEeCCCCccccCCCc--cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924           49 NN-FNG-KIPRKFVKS------CNLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (334)
Q Consensus        49 N~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  118 (334)
                      |+ +++ .+|..++.+      ++|++|++++|+++ .+|.  .+.++++|++|++++|++++.+| .++.+++|++|++
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            87 776 677776665      77888888888877 6776  77778888888888888776667 6777778888888


Q ss_pred             ecccCcccCCCCCCCCCCCC-ccEEEecCCccccccchhhHHhH--HhhhhcCCccccccccc--CCC-------CCCce
Q 019924          119 RSNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGVLLTGYLDNF--KAMMHGNNISVEVDYMT--PLN-------SSNYY  186 (334)
Q Consensus       119 ~~N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~~~~~~~~~~~~~--~~~-------~~~~l  186 (334)
                      ++|+++ .+|..+  ..+++ |+.|++++|.++. +|.. +..+  .+|..++...+.+....  ...       ....+
T Consensus       361 ~~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~~-lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L  435 (636)
T 4eco_A          361 AYNQIT-EIPANF--CGFTEQVENLSFAHNKLKY-IPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV  435 (636)
T ss_dssp             CSSEEE-ECCTTS--EEECTTCCEEECCSSCCSS-CCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred             CCCccc-cccHhh--hhhcccCcEEEccCCcCcc-cchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence            888776 555554  67777 8888888888773 3332 2221  13433333222221110  011       11122


Q ss_pred             eeEE---EEEeccchhhhhhhhheeEEEccCcccccCCchhhhC--------cCCCCeeeccCCccCCCC
Q 019924          187 ESII---LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK--------LNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       187 ~~~~---~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~l~  245 (334)
                      ..+.   +.+..++...+..+++|+.|+|++|+++ .+|.....        +++|+.|++++|+++.+.
T Consensus       436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp  504 (636)
T 4eco_A          436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS  504 (636)
T ss_dssp             EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred             CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence            2222   2334455555666778888888888887 55544322        227888888888887543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=185.41  Aligned_cols=188  Identities=18%  Similarity=0.133  Sum_probs=126.6

Q ss_pred             CCcccEEEcCCCCCCCCCCCC-----CCCCCeEECCCC-----------------CCCCEEeCCCCcCccccCcCccCCC
Q 019924            6 IATLYYLDLSNNFLTNIEYFP-----PTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKSC   63 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~~~-----~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~~p~~~~~l~   63 (334)
                      +++|++|++++|.+++..+..     +++|+.|++++|                 ++|++|++++|++++..|..|..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            467999999999999877633     566777777766                 3677777777777766667777777


Q ss_pred             CccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcCCCh----hhhcCCCCCEEEeecccCcccCCCCC-CCC
Q 019924           64 NLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFPN----WLEILPELQVLILRSNRFWGPIGENT-TIV  134 (334)
Q Consensus        64 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~~~~-~~~  134 (334)
                      +|++|++++|++.+.    .+..+..+++|++|++++|+++. ++.    .++.+++|++|++++|++++..|..+ .+.
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            777777777776531    12233566777777777777754 222    24566777777777777766655443 111


Q ss_pred             CCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccC
Q 019924          135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS  214 (334)
Q Consensus       135 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  214 (334)
                      .+++|+.|++++|+++.. |...                                              .++|+.|||++
T Consensus       249 ~~~~L~~L~Ls~N~l~~l-p~~~----------------------------------------------~~~L~~L~Ls~  281 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQV-PKGL----------------------------------------------PAKLRVLDLSS  281 (310)
T ss_dssp             CCTTCCCEECCSSCCCSC-CSCC----------------------------------------------CSCCSCEECCS
T ss_pred             CcCcCCEEECCCCCCCch-hhhh----------------------------------------------cCCCCEEECCC
Confidence            225777777777777632 2210                                              24678888888


Q ss_pred             cccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          215 NKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       215 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                      |++++. |. +..+++|+.|++++|+|++
T Consensus       282 N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          282 NRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            888843 43 5777888888888888764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=4.3e-24  Score=211.08  Aligned_cols=143  Identities=17%  Similarity=0.235  Sum_probs=123.6

Q ss_pred             cCCCcccEEEcCCCCCCC------------------CCC--C--CCCCCCeEECCCC-------------CCCCEEeCCC
Q 019924            4 LGIATLYYLDLSNNFLTN------------------IEY--F--PPTNMTQLNFDSN-------------LTHKVLDMRM   48 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~------------------~~~--~--~~~~L~~L~l~~n-------------~~L~~L~Ls~   48 (334)
                      .++++|++|+|++|.+++                  ++.  .  .+++|+.|++++|             ++|++|++++
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence            367999999999999999                  554  3  6889999999988             6899999999


Q ss_pred             Cc-Ccc-ccCcCccCC-------CCccEEeCCCCccccCCCc--cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924           49 NN-FNG-KIPRKFVKS-------CNLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI  117 (334)
Q Consensus        49 N~-l~~-~~p~~~~~l-------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  117 (334)
                      |+ +++ .+|..++.+       ++|+.|++++|+++ .+|.  .+.++++|++|++++|+++ .+| .++.+++|++|+
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence            98 887 788766555       49999999999999 7888  8999999999999999998 577 888999999999


Q ss_pred             eecccCcccCCCCCCCCCCCC-ccEEEecCCccccc
Q 019924          118 LRSNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGV  152 (334)
Q Consensus       118 L~~N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~  152 (334)
                      +++|+++ .+|..+  ..+++ |+.|++++|.++..
T Consensus       602 Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~~l  634 (876)
T 4ecn_A          602 LDYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLKYI  634 (876)
T ss_dssp             CCSSCCS-CCCTTS--CEECTTCCEEECCSSCCCSC
T ss_pred             CcCCccc-cchHHH--hhccccCCEEECcCCCCCcC
Confidence            9999997 677655  78888 99999999999843

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=7.6e-24  Score=198.31  Aligned_cols=215  Identities=18%  Similarity=0.097  Sum_probs=113.7

Q ss_pred             CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccC
Q 019924            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN   85 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~   85 (334)
                      +++|++|+|++|.+++.++..+..+..|        ++|+|++|.+++..|  |..+++|++|++++|.+++..     .
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~   97 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKL--------ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----V   97 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTC--------CEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----E
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCC--------CEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----C
Confidence            4589999999999999877433333332        555555555554333  455555555555555554221     1


Q ss_pred             CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhh
Q 019924           86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM  165 (334)
Q Consensus        86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  165 (334)
                      .++|++|++++|.+++..+.   .+++|++|++++|.+++..+..+  ..+++|+.|++++|.+++..+..+...++.|.
T Consensus        98 ~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           98 GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence            14555555555555443222   23445555555555544444333  44455555555555555444433333344444


Q ss_pred             hcCCcccccccccCCC---CCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924          166 HGNNISVEVDYMTPLN---SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       166 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      .++...+.+.......   ....+....+.+.+++.. +..+++|+.|+|++|.++ .+|..+..+++|+.|++++|+++
T Consensus       173 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             EEecCCCccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            3333222222211111   111111112223333333 445778888888888887 46777888888888888888876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=2.5e-25  Score=196.81  Aligned_cols=217  Identities=16%  Similarity=0.102  Sum_probs=150.2

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------------------CCCCEEeCCCCcCccccCcCc--cC
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPRKF--VK   61 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------------------~~L~~L~Ls~N~l~~~~p~~~--~~   61 (334)
                      +.++|+.|++++|.+ .++..-...|+.|++++|                     ++|++|++++|++++..|..+  ..
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             cCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            446788888999988 443322222555555554                     468899999999988888876  88


Q ss_pred             CCCccEEeCCCCccccCCCccccCC-----CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccC--CCCCCCC
Q 019924           62 SCNLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI--GENTTIV  134 (334)
Q Consensus        62 l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~~  134 (334)
                      +++|++|++++|++++. |..+..+     ++|++|++++|++++..|..++.+++|++|++++|++.+.+  +....+.
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            89999999999999866 7777776     88999999999998877788889999999999999876542  2223336


Q ss_pred             CCCCccEEEecCCcccccc--chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEc
Q 019924          135 PFPSLRIIDLSHNEFTGVL--LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL  212 (334)
Q Consensus       135 ~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L  212 (334)
                      .+++|++|++++|.+++..  +...+..+++|+.++...+.+....+                  ......+++|+.|+|
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------------------APSCDWPSQLNSLNL  260 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC------------------CSCCCCCTTCCEEEC
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc------------------hhhhhhcCCCCEEEC
Confidence            7889999999999887432  22333344444444432222211110                  011122567888888


Q ss_pred             cCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       213 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ++|+++ .+|..+.  ++|+.|++++|+|+++
T Consensus       261 s~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          261 SFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             TTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred             CCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence            888887 6676665  7788888888887765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=9.2e-23  Score=179.93  Aligned_cols=194  Identities=18%  Similarity=0.231  Sum_probs=112.1

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l   83 (334)
                      ++++|++|++++|.++.++. ..+++|           ++|++++|++++..+  +..+++|++|++++|++++ ++ .+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L-----------~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~  103 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNL-----------IGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AI  103 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTC-----------CEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GG
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCC-----------CEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hh
Confidence            46789999999999987643 334444           555555555553322  5555555555555555553 22 45


Q ss_pred             cCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHh
Q 019924           84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA  163 (334)
Q Consensus        84 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  163 (334)
                      ..+++|++|++++|++++. +. +..+++|++|++++|++++..+    +..+++|+.|++++|.+++..+   +..+++
T Consensus       104 ~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~  174 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---LANLSK  174 (308)
T ss_dssp             TTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCTT
T ss_pred             cCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcCCCChh---hcCCCC
Confidence            5555555555555555542 22 5555555555555555543322    2455555555555555554322   223333


Q ss_pred             hhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       164 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                      |..++...+.+                   .+++.  +..+++|+.|++++|++++..  .+..+++|+.|++++|++++
T Consensus       175 L~~L~l~~n~l-------------------~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          175 LTTLKADDNKI-------------------SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEECCSSCC-------------------CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCEEECCCCcc-------------------CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            32222211111                   11111  234788999999999998554  38999999999999999976


Q ss_pred             CC
Q 019924          244 LC  245 (334)
Q Consensus       244 l~  245 (334)
                      ..
T Consensus       232 ~~  233 (308)
T 1h6u_A          232 QP  233 (308)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=4.8e-22  Score=172.01  Aligned_cols=171  Identities=22%  Similarity=0.215  Sum_probs=138.3

Q ss_pred             CCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc
Q 019924           29 NMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ   98 (334)
Q Consensus        29 ~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~   98 (334)
                      +.+.++++++          +++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++|+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            3556666665          468889999999887777788888999999999998886666667888899999999999


Q ss_pred             CCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCccccccccc
Q 019924           99 INDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT  178 (334)
Q Consensus        99 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~  178 (334)
                      +++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++|.+++..+..                      
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~----------------------  152 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGV----------------------  152 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT----------------------
T ss_pred             CCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCHhH----------------------
Confidence            888777778888899999999998876665544  78888999999999887643321                      


Q ss_pred             CCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                                            +..+++|+.|+|++|++++..+..|.++++|+.|++++|+++++.
T Consensus       153 ----------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          153 ----------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             ----------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ----------------------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence                                  223678999999999999777778999999999999999998654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=3.5e-23  Score=175.91  Aligned_cols=182  Identities=18%  Similarity=0.156  Sum_probs=113.7

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCc-CccccCcCccCCCCccEEeCCC-CccccCCCccccC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVN   85 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~   85 (334)
                      +|++|++++|.++++++..+.++..|        ++|++++|+ ++...+..|.++++|++|++++ |++++..+..|.+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L--------~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~  103 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNI--------SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE  103 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTC--------CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred             cccEEEEeCCcceEECHHHccCCCCC--------cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence            45666666666665555444444433        666666664 5544445566666666666665 6666545555666


Q ss_pred             CCCCCEEEccCCcCCcCCChhhhcCCCCC---EEEeecc-cCcccCCCCCCCCCCCCcc-EEEecCCccccccchhhHHh
Q 019924           86 CHHLEVLNVGNNQINDNFPNWLEILPELQ---VLILRSN-RFWGPIGENTTIVPFPSLR-IIDLSHNEFTGVLLTGYLDN  160 (334)
Q Consensus        86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~  160 (334)
                      +++|++|++++|++++ +|. +..+++|+   +|++++| ++++..+..+  ..+++|+ .|++++|.++.. +      
T Consensus       104 l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~~i-~------  172 (239)
T 2xwt_C          104 LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFTSV-Q------  172 (239)
T ss_dssp             CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCCEE-C------
T ss_pred             CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCccc-C------
Confidence            6666666666666655 343 55555555   6666666 5544333333  5566666 666666665522 2      


Q ss_pred             HHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcc-cccCCchhhhCc-CCCCeeeccC
Q 019924          161 FKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKL-NLLKGLNISH  238 (334)
Q Consensus       161 l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~  238 (334)
                                                           ...+. .++|+.|++++|+ +++..+..|..+ ++|+.|++++
T Consensus       173 -------------------------------------~~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          173 -------------------------------------GYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             -------------------------------------TTTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             -------------------------------------HhhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence                                                 11122 2579999999995 987777889999 9999999999


Q ss_pred             CccCCCCC
Q 019924          239 NNLTGLCG  246 (334)
Q Consensus       239 N~l~~l~~  246 (334)
                      |+++++..
T Consensus       215 N~l~~l~~  222 (239)
T 2xwt_C          215 TSVTALPS  222 (239)
T ss_dssp             CCCCCCCC
T ss_pred             CccccCCh
Confidence            99987543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.7e-22  Score=192.76  Aligned_cols=135  Identities=21%  Similarity=0.236  Sum_probs=114.0

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCC
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN   73 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n   73 (334)
                      ...+++|+++|.+++++...+++++.|++++|             ++|++|++++|++++..|..|.++++|++|++++|
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            44578999999999877766689999999988             68999999999999888999999999999999999


Q ss_pred             ccccCCCccccCCCCCCEEEccCCcCCcC-CChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCc--cEEEecCCcc
Q 019924           74 RLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL--RIIDLSHNEF  149 (334)
Q Consensus        74 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L--~~L~Ls~N~l  149 (334)
                      +++ .+|..  .+++|++|++++|++++. .|..|+.+++|++|++++|++++.   .  +..+++|  +.|++++|.+
T Consensus       111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~--~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D--LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T--TGGGTTSCEEEEEEEESSC
T ss_pred             cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c--hhhhhhceeeEEEeecccc
Confidence            998 56665  799999999999999883 468899999999999999998642   2  2455555  8999998887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=6.8e-23  Score=194.78  Aligned_cols=148  Identities=18%  Similarity=0.128  Sum_probs=128.7

Q ss_pred             CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      ++...+.|.+++.++.++...+++|++|++++|             ++|++|++++|++++..|..|..+++|++|++++
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence            445556799999999988877789999999999             7899999999999988889999999999999999


Q ss_pred             CccccCCCccccCCCCCCEEEccCCcCCcC-CChhhhcCCCCCEEEeecccCcccCC-CCCCCCCCCCccEEEecCCccc
Q 019924           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      |++++..|..|.++++|++|++++|.+++. .|..++.+++|++|++++|++.+.++ ..+  ..+++|++|++++|.++
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF--AGLTSLNELEIKALSLR  161 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCC
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh--hcccccCeeeccCCccc
Confidence            999977777799999999999999999863 56788999999999999998555555 334  88999999999999988


Q ss_pred             cccch
Q 019924          151 GVLLT  155 (334)
Q Consensus       151 ~~~~~  155 (334)
                      +..+.
T Consensus       162 ~~~~~  166 (549)
T 2z81_A          162 NYQSQ  166 (549)
T ss_dssp             EECTT
T ss_pred             ccChh
Confidence            76543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=1.1e-21  Score=188.68  Aligned_cols=153  Identities=16%  Similarity=0.135  Sum_probs=114.3

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (334)
                      ++++.+++.++.++..-.+++++|++++|             ++|++|++++|++++..|..|.++++|++|++++|+++
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             TEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence            34555555555554444455555555555             45688888888888777888888888888888888888


Q ss_pred             cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc-cCCCCCCCCCCCCccEEEecCCccccccch
Q 019924           77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLT  155 (334)
Q Consensus        77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  155 (334)
                      +..|..|.++++|++|++++|++++..+..++.+++|++|++++|++++ .+|..+  ..+++|++|++++|.+++..+.
T Consensus        94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~--~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A           94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF--SNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG--GTCTTCCEEECCSSCCCEECTT
T ss_pred             ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH--hhcCCCCEEEccCCcceecChh
Confidence            7778888888888888888888888776778888888888888888865 345544  7888888888888888876553


Q ss_pred             hhHHhHHhhh
Q 019924          156 GYLDNFKAMM  165 (334)
Q Consensus       156 ~~~~~l~~L~  165 (334)
                      . ++.+.++.
T Consensus       172 ~-~~~l~~L~  180 (606)
T 3vq2_A          172 D-LQFLRENP  180 (606)
T ss_dssp             T-THHHHHCT
T ss_pred             h-hhhhhccc
Confidence            3 55666553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=5.2e-22  Score=189.45  Aligned_cols=226  Identities=16%  Similarity=0.116  Sum_probs=131.8

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l   86 (334)
                      +++++||+++|.++++++..+.++..        |++|++++|++++..|..|.++++|++|++++|++++..|..|.++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~--------L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPE--------LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSS--------CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             ccccEEEccCCccCccChhHhhCCCC--------ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            45777788888777766543333333        3666666666665556666666666666666666665555666666


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc-cCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh-
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-  164 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-  164 (334)
                      ++|++|++++|++++..+..++.+++|++|++++|.+++ .+|..+  ..+++|+.|++++|.+++..+. .++.+.++ 
T Consensus       100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~  176 (570)
T 2z63_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMP  176 (570)
T ss_dssp             TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECTTSCCCEECGG-GGHHHHTCT
T ss_pred             cccccccccccccccCCCccccccccccEEecCCCccceecChhhh--cccCCCCEEeCcCCccceecHH-Hccchhccc
Confidence            666666666666666444456666666666666666654 234433  5666666666666666654432 24444444 


Q ss_pred             ---hhcCCcccccccccCCC--------------------------------------------------------CCCc
Q 019924          165 ---MHGNNISVEVDYMTPLN--------------------------------------------------------SSNY  185 (334)
Q Consensus       165 ---~~~~~~~~~~~~~~~~~--------------------------------------------------------~~~~  185 (334)
                         ..++.....+.......                                                        ....
T Consensus       177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~  256 (570)
T 2z63_A          177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN  256 (570)
T ss_dssp             TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred             hhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence               11111111111000000                                                        0000


Q ss_pred             eeeEEE------EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          186 YESIIL------TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       186 l~~~~~------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      +....+      ...+.....+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.++.+.
T Consensus       257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~  320 (570)
T 2z63_A          257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFP  320 (570)
T ss_dssp             SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCC
T ss_pred             cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccC
Confidence            011111      122333445566788999999999988 688888888 8889999988887543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=2.3e-22  Score=187.44  Aligned_cols=203  Identities=22%  Similarity=0.249  Sum_probs=107.9

Q ss_pred             CCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCC
Q 019924            6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN   73 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n   73 (334)
                      +++|++|++++|.+++... ..+++|+.|++++|           ++|++|++++|++++.  ..+..+++|+.|++++|
T Consensus       176 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN  253 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             CCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCC
Confidence            4555555555555554433 34445555555544           3455555555555422  23444555555555555


Q ss_pred             ccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924           74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus        74 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      ++++..|  +..+++|++|++++|.+++..+  +..+++|++|++++|++++..+    +..+++|+.|++++|++++..
T Consensus       254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~  325 (466)
T 1o6v_A          254 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDIS  325 (466)
T ss_dssp             CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCG
T ss_pred             ccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCch
Confidence            5543322  4455555555555555544222  4455555555555555543222    244555555555555555443


Q ss_pred             chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCe
Q 019924          154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG  233 (334)
Q Consensus       154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  233 (334)
                      +   +..+++|+.++..                   .+.+.++  ..+..+++|+.|++++|++++..|  +..+++|+.
T Consensus       326 ~---~~~l~~L~~L~l~-------------------~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  379 (466)
T 1o6v_A          326 P---VSSLTKLQRLFFY-------------------NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQ  379 (466)
T ss_dssp             G---GGGCTTCCEEECC-------------------SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred             h---hccCccCCEeECC-------------------CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence            3   2222222222221                   1111222  234457889999999999987766  788999999


Q ss_pred             eeccCCccCCC
Q 019924          234 LNISHNNLTGL  244 (334)
Q Consensus       234 L~Ls~N~l~~l  244 (334)
                      |++++|+++++
T Consensus       380 L~l~~n~~~~~  390 (466)
T 1o6v_A          380 LGLNDQAWTNA  390 (466)
T ss_dssp             EECCCEEEECC
T ss_pred             EeccCCcccCC
Confidence            99999998875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6e-22  Score=173.14  Aligned_cols=170  Identities=19%  Similarity=0.149  Sum_probs=138.5

Q ss_pred             CCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEcc
Q 019924           26 PPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVG   95 (334)
Q Consensus        26 ~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls   95 (334)
                      .+++++.++++++          +.+++|++++|++++..+..|..+++|++|++++|++++..+  ...+++|++|+++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls   85 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS   85 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred             ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECC
Confidence            3566777777776          578899999999988888889999999999999999885433  2678899999999


Q ss_pred             CCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccc
Q 019924           96 NNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD  175 (334)
Q Consensus        96 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~  175 (334)
                      +|+++. +|..+..+++|++|++++|++++..+..+  ..+++|+.|++++|++++..+..                   
T Consensus        86 ~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-------------------  143 (290)
T 1p9a_G           86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELKTLPPGL-------------------  143 (290)
T ss_dssp             SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCCCCCTTT-------------------
T ss_pred             CCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCCccChhh-------------------
Confidence            999886 67778888999999999999876655555  78889999999999888654321                   


Q ss_pred             cccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          176 YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                                               +..+++|+.|+|++|++++..+..+..+++|+.|++++|+++.+
T Consensus       144 -------------------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i  187 (290)
T 1p9a_G          144 -------------------------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI  187 (290)
T ss_dssp             -------------------------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             -------------------------cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence                                     12267899999999999966667788999999999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=3.2e-22  Score=186.50  Aligned_cols=138  Identities=24%  Similarity=0.295  Sum_probs=78.9

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      .+++|++|++++|.+++.++ ..+++|++|++++|           ++|++|++++|++++..+  +..+++|++|++++
T Consensus        66 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~  143 (466)
T 1o6v_A           66 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS  143 (466)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEE
T ss_pred             hhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCC
Confidence            45677777777777776655 55667777777666           567777777777764322  66666666666666


Q ss_pred             CccccCCCc--------------------cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCC
Q 019924           73 NRLEGPLPP--------------------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT  132 (334)
Q Consensus        73 n~l~~~~p~--------------------~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  132 (334)
                      |++++. +.                    .+.++++|++|++++|.+++.  ..+..+++|++|++++|.+++..+    
T Consensus       144 n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----  216 (466)
T 1o6v_A          144 NTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----  216 (466)
T ss_dssp             EEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----
T ss_pred             CccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc----
Confidence            665532 11                    134455555566666655542  234555556666666555543322    


Q ss_pred             CCCCCCccEEEecCCcccc
Q 019924          133 IVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus       133 ~~~l~~L~~L~Ls~N~l~~  151 (334)
                      +..+++|+.|++++|.+++
T Consensus       217 ~~~l~~L~~L~l~~n~l~~  235 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKD  235 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCC
T ss_pred             ccccCCCCEEECCCCCccc
Confidence            1334445555555554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=2.9e-22  Score=166.58  Aligned_cols=170  Identities=21%  Similarity=0.169  Sum_probs=122.3

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCC
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L   89 (334)
                      +.++++++.++.++....+++           ++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l-----------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQT-----------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL   78 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTC-----------SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEecCCCccCCCCCCCCCC-----------cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence            567788888777665433333           677888888886666677888888888888888886666667788888


Q ss_pred             CEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCC
Q 019924           90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN  169 (334)
Q Consensus        90 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~  169 (334)
                      ++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|+.|++++|.+++..+.. +           
T Consensus        79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~-~-----------  144 (208)
T 2o6s_A           79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLKSVPDGV-F-----------  144 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-T-----------
T ss_pred             CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccceeCHHH-h-----------
Confidence            888888888887666667888888888888888875554434  67888888888888887543321 1           


Q ss_pred             cccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                                                      ..+++|+.|++++|.+.+       .++.|+.|+++.|+++|
T Consensus       145 --------------------------------~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          145 --------------------------------DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             --------------------------------TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             --------------------------------ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence                                            125567777777777663       34467777777777765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=2.1e-23  Score=184.85  Aligned_cols=207  Identities=18%  Similarity=0.154  Sum_probs=169.4

Q ss_pred             cCCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC--------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924            4 LGIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN--------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n--------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~   74 (334)
                      .++++|++|++++|.+++.++ ..+++|+.|++++|        ++|++|++++|++++..+..   +++|++|++++|+
T Consensus        55 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~  131 (317)
T 3o53_A           55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNK  131 (317)
T ss_dssp             TTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSC
T ss_pred             hCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCC
Confidence            367999999999999987766 77899999999999        79999999999999765544   5789999999999


Q ss_pred             cccCCCccccCCCCCCEEEccCCcCCcCCChhh-hcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus        75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      +++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++....    ..+++|+.|++++|.+++..
T Consensus       132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~  207 (317)
T 3o53_A          132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMG  207 (317)
T ss_dssp             CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEEC
T ss_pred             CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----cccccCCEEECCCCcCCcch
Confidence            998778889999999999999999998777766 4789999999999999765222    35899999999999999765


Q ss_pred             chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccc-cCCchhhhCcCCCC
Q 019924          154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLK  232 (334)
Q Consensus       154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~  232 (334)
                      +.  +..+++|..++...+.+..                   ++. .+..+++|+.|++++|.++ +.+|..+..+++|+
T Consensus       208 ~~--~~~l~~L~~L~L~~N~l~~-------------------l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          208 PE--FQSAAGVTWISLRNNKLVL-------------------IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             GG--GGGGTTCSEEECTTSCCCE-------------------ECT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             hh--hcccCcccEEECcCCcccc-------------------hhh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence            43  5666666665553332221                   111 1234789999999999998 78899999999999


Q ss_pred             eeeccCC
Q 019924          233 GLNISHN  239 (334)
Q Consensus       233 ~L~Ls~N  239 (334)
                      .+++++|
T Consensus       266 ~l~l~~~  272 (317)
T 3o53_A          266 TVAKQTV  272 (317)
T ss_dssp             HHHHHHH
T ss_pred             EEECCCc
Confidence            9999954

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=9.3e-22  Score=182.65  Aligned_cols=135  Identities=25%  Similarity=0.247  Sum_probs=104.3

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCC
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN   73 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n   73 (334)
                      ++++|++|++++|.+++.+. ..+++|++|++++|          ++|++|++++|++++. |  ++.+++|++|++++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred             HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence            46888999999999888754 56778888888887          6788888888888854 3  778888888888888


Q ss_pred             ccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924           74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        74 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      ++++ +|  +..+++|++|++++|++++. +  ++.+++|++|++++|+..+.+    .+..+++|+.|++++|++++.
T Consensus       117 ~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          117 KLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             CCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCC
T ss_pred             cCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCcccee
Confidence            8885 44  77888888888888888873 3  667788888888888544443    236677888888888887764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=5.9e-23  Score=192.29  Aligned_cols=205  Identities=18%  Similarity=0.159  Sum_probs=169.5

Q ss_pred             cCCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC--------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924            4 LGIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN--------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n--------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~   74 (334)
                      .++++|++|+|++|.+++.++ ..+++|+.|++++|        ++|++|++++|.+++..+..   +++|+.|++++|.
T Consensus        55 ~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~  131 (487)
T 3oja_A           55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNK  131 (487)
T ss_dssp             TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSC
T ss_pred             hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCC
Confidence            468999999999999987766 77899999999999        78999999999999766543   5789999999999


Q ss_pred             cccCCCccccCCCCCCEEEccCCcCCcCCChhhh-cCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus        75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      +++..|..+.++++|++|++++|.+++..|..+. .+++|++|+|++|.+++..+.    ..+++|+.|++++|.+++.+
T Consensus       132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEEC
T ss_pred             CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc----ccCCCCCEEECCCCCCCCCC
Confidence            9988888999999999999999999998888776 799999999999999766332    45899999999999999865


Q ss_pred             chhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccc-cCCchhhhCcCCCC
Q 019924          154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLK  232 (334)
Q Consensus       154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~  232 (334)
                      +.  +..++.|..++...+.+..                   ++. .+..+++|+.|++++|.+. +.+|..+..++.|+
T Consensus       208 ~~--~~~l~~L~~L~Ls~N~l~~-------------------lp~-~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          208 PE--FQSAAGVTWISLRNNKLVL-------------------IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             GG--GGGGTTCSEEECTTSCCCE-------------------ECT-TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred             Hh--HcCCCCccEEEecCCcCcc-------------------cch-hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence            53  5666666665553332221                   111 1233688999999999998 67888899999999


Q ss_pred             eeecc
Q 019924          233 GLNIS  237 (334)
Q Consensus       233 ~L~Ls  237 (334)
                      .++++
T Consensus       266 ~l~~~  270 (487)
T 3oja_A          266 TVAKQ  270 (487)
T ss_dssp             HHHHH
T ss_pred             EEecc
Confidence            99886

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=8.3e-22  Score=182.97  Aligned_cols=225  Identities=20%  Similarity=0.182  Sum_probs=153.7

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~   74 (334)
                      ++++|++|++++|.+++++...+++|+.|++++|          ++|++|++++|+..+.+  .+..+++|++|++++|+
T Consensus       104 ~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             CCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            5788999999999998876677888888888887          67888999888655454  47788889999999998


Q ss_pred             cccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus        75 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      +++ +|  +..+++|+.|++++|++++.   .++.+++|++|++++|++++ +|  +  ..+++|+.|++++|++++..+
T Consensus       182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~--~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--V--TPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C--TTCTTCSEEECCSSCCSCCCC
T ss_pred             cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--c--cccCCCCEEEeeCCcCCCcCH
Confidence            885 44  77888888999988888874   37788888888888888876 33  3  678888888888888887643


Q ss_pred             hhhHHhHHhh-------hhcCCccccc-cc--ccCCCCCC--------ceeeEEEEEeccchhhhhhhhheeEEEccCcc
Q 019924          155 TGYLDNFKAM-------MHGNNISVEV-DY--MTPLNSSN--------YYESIILTIKGIDIKMERILTIFMTIDLSSNK  216 (334)
Q Consensus       155 ~~~~~~l~~L-------~~~~~~~~~~-~~--~~~~~~~~--------~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  216 (334)
                       ..+.+++.+       ..++...... ..  ........        ...........+..-.+..+++|++|++++|+
T Consensus       251 -~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~  329 (457)
T 3bz5_A          251 -STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE  329 (457)
T ss_dssp             -TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred             -HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence             223333322       1111111000 00  00001111        11111111111111123446889999999999


Q ss_pred             cccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924          217 FQGGIPEVVGKLNLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       217 l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~  246 (334)
                      +++. +  +.++++|+.|++++|+++++..
T Consensus       330 l~~l-~--l~~l~~L~~L~l~~N~l~~l~~  356 (457)
T 3bz5_A          330 LTEL-D--VSHNTKLKSLSCVNAHIQDFSS  356 (457)
T ss_dssp             CSCC-C--CTTCTTCSEEECCSSCCCBCTT
T ss_pred             cccc-c--cccCCcCcEEECCCCCCCCccc
Confidence            9974 3  8899999999999999998643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.7e-21  Score=166.66  Aligned_cols=192  Identities=22%  Similarity=0.200  Sum_probs=150.6

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l   86 (334)
                      ++++.|++++|.+++..+..+.++..|        ++|++++|++++..+..|..+++|++|++++|++++..+..|..+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L--------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  106 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKL--------TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL  106 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTC--------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccC--------CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhccc
Confidence            579999999999999888777777665        999999999998888889999999999999999998778889999


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      ++|++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|+.|++++|++++..+.. +        
T Consensus       107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~--------  175 (251)
T 3m19_A          107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF--DKLTNLQTLSLSTNQLQSVPHGA-F--------  175 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-T--------
T ss_pred             CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc--CcCcCCCEEECCCCcCCccCHHH-H--------
Confidence            999999999999999777788999999999999999986666555  88999999999999998765422 1        


Q ss_pred             cCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCc------hhhhCcCCCCeeeccCCc
Q 019924          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP------EVVGKLNLLKGLNISHNN  240 (334)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p------~~l~~l~~L~~L~Ls~N~  240 (334)
                                                         ..+++|+.|+|++|.++...+      .++.. ...+..+..++.
T Consensus       176 -----------------------------------~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~-~~~~~~~~~~~~  219 (251)
T 3m19_A          176 -----------------------------------DRLGKLQTITLFGNQFDCSRCEILYLSQWIRE-NSNKVKDGTGQN  219 (251)
T ss_dssp             -----------------------------------TTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH-SGGGBCC-----
T ss_pred             -----------------------------------hCCCCCCEEEeeCCceeCCccccHHHHHHHHh-cccceeeccCcc
Confidence                                               126789999999999986632      22221 122233444544


Q ss_pred             cCCCCCCCccCCCCCC
Q 019924          241 LTGLCGFPLLESCNID  256 (334)
Q Consensus       241 l~~l~~~~~~~~c~~~  256 (334)
                         +++.|....|...
T Consensus       220 ---~~~~~~~~~C~~~  232 (251)
T 3m19_A          220 ---LHESPDGVTCSDG  232 (251)
T ss_dssp             -----CCGGGCBBTTS
T ss_pred             ---cccCCCcCccCCC
Confidence               3556666667653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.88  E-value=5.6e-22  Score=178.78  Aligned_cols=183  Identities=25%  Similarity=0.228  Sum_probs=152.8

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCcc-CCCCccEEeCCCCccccCCCccccCCCC
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~   88 (334)
                      ++++++++.++.++..-...           +++|+|++|+|++..+..|. .+++|++|+|++|+|++..+..|.++++
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~-----------l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   89 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSY-----------TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN   89 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTT-----------CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEEEeCCCCcCccCccCCCC-----------CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence            57899999998876533333           37889999999988888887 9999999999999999888888999999


Q ss_pred             CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcC
Q 019924           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN  168 (334)
Q Consensus        89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~  168 (334)
                      |++|+|++|+++...+..|..+++|++|+|++|++++..+..+  ..+++|+.|+|++|.+++..+.. +..+       
T Consensus        90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~-------  159 (361)
T 2xot_A           90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRFPVEL-IKDG-------  159 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCSCCGGG-TC---------
T ss_pred             CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCeeCHHH-hcCc-------
Confidence            9999999999999888889999999999999999987767655  88999999999999998654321 1110       


Q ss_pred             CcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCC--CCeeeccCCccCCCCC
Q 019924          169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLNISHNNLTGLCG  246 (334)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~l~~  246 (334)
                                                       ..+++|+.|||++|+|++..+..+..++.  ++.|++++|++.+-|.
T Consensus       160 ---------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          160 ---------------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             ---------------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence                                             12678999999999999766678888887  4889999999987664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=1e-21  Score=170.41  Aligned_cols=203  Identities=21%  Similarity=0.163  Sum_probs=156.1

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCC
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L   89 (334)
                      ...+.++..++.++..-.+           ++++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|
T Consensus        10 ~~~~c~~~~l~~ip~~l~~-----------~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLPF-----------STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL   78 (276)
T ss_dssp             TEEECTTSCCSSCCSSSCT-----------TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred             ceEEecCCCccccCCCCCC-----------CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC
Confidence            3567777777766543222           34888999999998777799999999999999999997778889999999


Q ss_pred             CEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCC
Q 019924           90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN  169 (334)
Q Consensus        90 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~  169 (334)
                      ++|++++|.+++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++|.+++......+..+++|+.++.
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L  156 (276)
T 2z62_A           79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             CEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence            999999999999888899999999999999999977655544  889999999999999987532233566666555444


Q ss_pred             cccccccccCCCCCCceeeEEEEEeccchhhhhhhhhee----EEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFM----TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      ..+                   .+..++...+..+++|+    .|++++|.+++..+..+ ...+|+.|++++|+++++.
T Consensus       157 s~N-------------------~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~  216 (276)
T 2z62_A          157 SSN-------------------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVP  216 (276)
T ss_dssp             CSS-------------------CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCC
T ss_pred             CCC-------------------CCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecC
Confidence            222                   12223334444556666    89999999985555444 4458999999999998654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=2.8e-21  Score=162.00  Aligned_cols=156  Identities=20%  Similarity=0.264  Sum_probs=94.5

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  121 (334)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|++++..|..|..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45566666665 4444433  45666666666666555555666666666666666666655666666666666666666


Q ss_pred             cCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhh
Q 019924          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (334)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (334)
                      ++++..+..+  ..+++|+.|++++|.+++..+..                                            +
T Consensus        91 ~l~~l~~~~f--~~l~~L~~L~L~~N~l~~~~~~~--------------------------------------------~  124 (220)
T 2v9t_B           91 KITELPKSLF--EGLFSLQLLLLNANKINCLRVDA--------------------------------------------F  124 (220)
T ss_dssp             CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT--------------------------------------------T
T ss_pred             cCCccCHhHc--cCCCCCCEEECCCCCCCEeCHHH--------------------------------------------c
Confidence            6653333322  55666666666666666543321                                            1


Q ss_pred             hhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~  246 (334)
                      ..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.|.
T Consensus       125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            114566777777777776666667777777777777777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=1.2e-20  Score=178.69  Aligned_cols=177  Identities=24%  Similarity=0.280  Sum_probs=125.5

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcccc
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG   77 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~   77 (334)
                      .+|+.|++++|.++++++..+++|+.|++++|         ++|++|++++|+|++ +|. +..  +|++|++++|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred             CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence            38999999999999977656677877777776         467777777777775 555 544  77777777777774


Q ss_pred             CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhh
Q 019924           78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY  157 (334)
Q Consensus        78 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  157 (334)
                       +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|++++ +|. +  .  ++|+.|++++|.++....  +
T Consensus       135 -lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--~--~~L~~L~Ls~N~L~~lp~--~  198 (571)
T 3cvr_A          135 -LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--P--ESLEALDVSTNLLESLPA--V  198 (571)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--C--TTCCEEECCSSCCSSCCC--C
T ss_pred             -CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--h--CCCCEEECcCCCCCchhh--H
Confidence             554   56777777777777776 444   46677777777777765 444 3  3  677777777777763321  1


Q ss_pred             HHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeecc
Q 019924          158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS  237 (334)
Q Consensus       158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  237 (334)
                      ..   +|                                    ....+.|+.|+|++|+|+ .+|..+.++++|+.|+++
T Consensus       199 ~~---~L------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~  238 (571)
T 3cvr_A          199 PV---RN------------------------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE  238 (571)
T ss_dssp             C-----------------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred             HH---hh------------------------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence            10   00                                    011344599999999998 788888889999999999


Q ss_pred             CCccCC
Q 019924          238 HNNLTG  243 (334)
Q Consensus       238 ~N~l~~  243 (334)
                      +|++++
T Consensus       239 ~N~l~~  244 (571)
T 3cvr_A          239 DNPLSS  244 (571)
T ss_dssp             SSSCCH
T ss_pred             CCcCCC
Confidence            999985

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=4.2e-21  Score=185.13  Aligned_cols=219  Identities=18%  Similarity=0.229  Sum_probs=125.3

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC---------------CCCCEEeCCCCcCccccCcCccCCCCccEE
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n---------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L   68 (334)
                      .++.|+.+++++|.+..... ..+++|+.|++++|               .+|++++++.|.+. ..+..+..+++|+.+
T Consensus       347 ~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l  425 (635)
T 4g8a_A          347 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHL  425 (635)
T ss_dssp             BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEE
T ss_pred             cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccch
Confidence            34556666666665554433 34556666666655               34555666555554 233445555555555


Q ss_pred             eCCCCccccCC-CccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc-cCCCCCCCCCCCCccEEEecC
Q 019924           69 NLNGNRLEGPL-PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSH  146 (334)
Q Consensus        69 ~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~  146 (334)
                      +++.|...... +..+..+.+++.++++.|.+....+..+..++.|++|++++|.+.+ ..+..+  ..+++|+.|++++
T Consensus       426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~--~~l~~L~~L~Ls~  503 (635)
T 4g8a_A          426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQ  503 (635)
T ss_dssp             ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTT
T ss_pred             hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh--hhccccCEEECCC
Confidence            55555443322 2334455555555555555555555555555555555555554322 233333  4555555555555


Q ss_pred             CccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhh
Q 019924          147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG  226 (334)
Q Consensus       147 N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  226 (334)
                      |++++..+.. +.++++|+.++...+                   .+.+++...+..+++|++|||++|+|++..|..+.
T Consensus       504 N~L~~l~~~~-f~~l~~L~~L~Ls~N-------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  563 (635)
T 4g8a_A          504 CQLEQLSPTA-FNSLSSLQVLNMSHN-------------------NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  563 (635)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECTTS-------------------CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred             CccCCcChHH-HcCCCCCCEEECCCC-------------------cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence            5555443322 333333333332111                   11223333344578899999999999999999999


Q ss_pred             Cc-CCCCeeeccCCccCCCCC
Q 019924          227 KL-NLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       227 ~l-~~L~~L~Ls~N~l~~l~~  246 (334)
                      .+ ++|+.|++++|++++-|.
T Consensus       564 ~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          564 HFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CCCTTCCEEECTTCCBCCSGG
T ss_pred             hhhCcCCEEEeeCCCCcccCC
Confidence            88 689999999999998886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=3.3e-21  Score=185.91  Aligned_cols=146  Identities=21%  Similarity=0.205  Sum_probs=114.7

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~   87 (334)
                      ++++|||++|+|+++++..|.+++.|        ++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L--------~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~  124 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  124 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTC--------CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCC--------CEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence            56777777777777766666666555        8899999999877778889999999999999999876677788899


Q ss_pred             CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCccc-CCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (334)
Q Consensus        88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  164 (334)
                      +|++|++++|++++..+..|+.+++|++|++++|++++. .+..  +..+++|++|++++|++++..+.. +..+..+
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l  199 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM  199 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG--GGGCTTCCEEECCSSCCCEECGGG-GHHHHTC
T ss_pred             CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh--hccchhhhhhcccCcccccccccc-ccchhhh
Confidence            999999999999887777788899999999999988643 3333  377888999999999988765543 5555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=3.9e-21  Score=161.18  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=49.7

Q ss_pred             CEEeCCCCcCccccC-cCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           42 KVLDMRMNNFNGKIP-RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      ++|++++|++++..| ..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  114 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS  114 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence            344455555543322 2344555555555555555544444455555555555555555544444444455555555555


Q ss_pred             ccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus       121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      |++++..+..+  ..+++|+.|++++|+++
T Consensus       115 N~l~~~~~~~~--~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A          115 NRITCVGNDSF--IGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             SCCCCBCTTSS--TTCTTCSEEECTTSCCC
T ss_pred             CcCCeECHhHc--CCCccCCEEECCCCcCC
Confidence            55444333322  33444444444444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=1.5e-20  Score=180.02  Aligned_cols=40  Identities=18%  Similarity=0.316  Sum_probs=36.2

Q ss_pred             hhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          203 ILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       203 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                      .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|++++
T Consensus       259 ~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence            4678999999999998 788899999999999999999985

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=2.2e-20  Score=157.61  Aligned_cols=154  Identities=20%  Similarity=0.207  Sum_probs=96.9

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  121 (334)
                      +.++.+++.++ .+|..+.  ++|++|++++|++++..|..|.++++|++|++++|+++...+..|..+++|++|++++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            45666666665 4444433  56666777777666666666666667777777777666655555666667777777777


Q ss_pred             cCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhh
Q 019924          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (334)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (334)
                      ++++..+..+  ..+++|+.|++++|+++.. |..+                                            
T Consensus        99 ~l~~l~~~~~--~~l~~L~~L~Ls~N~l~~l-p~~~--------------------------------------------  131 (229)
T 3e6j_A           99 QLTVLPSAVF--DRLVHLKELFMCCNKLTEL-PRGI--------------------------------------------  131 (229)
T ss_dssp             CCCCCCTTTT--TTCTTCCEEECCSSCCCSC-CTTG--------------------------------------------
T ss_pred             cCCccChhHh--CcchhhCeEeccCCccccc-Cccc--------------------------------------------
Confidence            6654444433  5666777777777766632 2210                                            


Q ss_pred             hhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      ..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.|
T Consensus       132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            11456677777777777555566777777777777777777655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.85  E-value=2.2e-20  Score=173.29  Aligned_cols=129  Identities=27%  Similarity=0.331  Sum_probs=92.4

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcccc
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG   77 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~   77 (334)
                      ++|++|++++|.+++++ ..+++|+.|++++|         ++|++|++++|++++ +| .|+.+++|++|++++|++++
T Consensus        91 ~~L~~L~l~~n~l~~lp-~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~  167 (454)
T 1jl5_A           91 PHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK  167 (454)
T ss_dssp             TTCSEEECCSSCCSSCC-CCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred             CCCCEEEccCCcCCccc-cccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence            56788888888888744 44578888888888         478889999998885 66 58888889999998888884


Q ss_pred             CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924           78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        78 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                       +|..+   .+|++|++++|++++ +| .++.+++|++|++++|++++ ++..     .++|+.|++++|.++
T Consensus       168 -lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          168 -LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-----PLSLESIVAGNNILE  228 (454)
T ss_dssp             -CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-----CTTCCEEECCSSCCS
T ss_pred             -cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-----cCcccEEECcCCcCC
Confidence             55433   478888888888877 45 47777777777777777754 2221     134555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.6e-20  Score=156.06  Aligned_cols=135  Identities=25%  Similarity=0.207  Sum_probs=93.6

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l   86 (334)
                      ++|++|++++|.++++++..+..+..|        ++|++++|++++..+..|..+++|++|++++|++++..+..+.++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   99 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSL--------TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL   99 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTC--------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccC--------cEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence            467777777777776665555555444        777777777776555566777777777777777775555556777


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                      ++|++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|+.|++++|.+.+
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCC
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCeec
Confidence            777777777777777666666777777777777777765444333  667777777777776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.85  E-value=9.4e-21  Score=175.74  Aligned_cols=219  Identities=22%  Similarity=0.273  Sum_probs=125.8

Q ss_pred             CcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924            7 ATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (334)
                      ++|++|++++|.+++++. ..+++|++|++++|         .+|++|++++|++++ +| .++.+++|++|++++|+++
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence            466667777776666443 45666777777776         467777777777774 44 4777777777777777776


Q ss_pred             cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchh
Q 019924           77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG  156 (334)
Q Consensus        77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  156 (334)
                      + +|...   ++|++|++++|.++. +|. ++.+++|++|++++|++++ ++.     .+++|+.|++++|.+++... .
T Consensus       209 ~-l~~~~---~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~~l~~-~  275 (454)
T 1jl5_A          209 K-LPDLP---LSLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLTDLPE-L  275 (454)
T ss_dssp             S-CCCCC---TTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCSCCCC-C
T ss_pred             c-CCCCc---CcccEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCcccccCc-c
Confidence            4 34322   467777777777764 453 6677777777777777754 222     12455555555555554211 1


Q ss_pred             hHHhHHhhhhcCC-----------------cccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCccccc
Q 019924          157 YLDNFKAMMHGNN-----------------ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG  219 (334)
Q Consensus       157 ~~~~l~~L~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  219 (334)
                       ..+++.+...++                 ..+.+..+....  ..+..+.+..+.+.. ....+++|+.|++++|+++ 
T Consensus       276 -~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~--~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~-  350 (454)
T 1jl5_A          276 -PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP--PSLEELNVSNNKLIE-LPALPPRLERLIASFNHLA-  350 (454)
T ss_dssp             -CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC--TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-
T ss_pred             -cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCc--CcCCEEECCCCcccc-ccccCCcCCEEECCCCccc-
Confidence             122222211111                 011111111110  122223322222221 2223578999999999998 


Q ss_pred             CCchhhhCcCCCCeeeccCCccCCCCCCC
Q 019924          220 GIPEVVGKLNLLKGLNISHNNLTGLCGFP  248 (334)
Q Consensus       220 ~~p~~l~~l~~L~~L~Ls~N~l~~l~~~~  248 (334)
                      .+|.   .+++|+.|++++|+++++...|
T Consensus       351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip  376 (454)
T 1jl5_A          351 EVPE---LPQNLKQLHVEYNPLREFPDIP  376 (454)
T ss_dssp             CCCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred             cccc---hhhhccEEECCCCCCCcCCCCh
Confidence            5666   4788999999999998865443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=4.9e-20  Score=154.43  Aligned_cols=147  Identities=20%  Similarity=0.191  Sum_probs=129.5

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCC--------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCcc
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL   75 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l   75 (334)
                      +.+++++|.++.++......++.|++++|              ++|++|++++|++++..+..|..+++|++|++++|++
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence            57888888888776655666778888877              6789999999999988888999999999999999999


Q ss_pred             ccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccch
Q 019924           76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT  155 (334)
Q Consensus        76 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  155 (334)
                      ++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..+  ..+++|+.|++++|.+....+.
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGG
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCch
Confidence            98888889999999999999999999889999999999999999999988777766  8899999999999999876554


Q ss_pred             hhH
Q 019924          156 GYL  158 (334)
Q Consensus       156 ~~~  158 (334)
                      .++
T Consensus       172 ~~l  174 (220)
T 2v70_A          172 AWL  174 (220)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=1e-20  Score=165.42  Aligned_cols=171  Identities=22%  Similarity=0.265  Sum_probs=139.5

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      .+++|+.|++++|.+++++.  +..+        ++|++|++++|++++..+  +..+++|++|++++|++++ +| .+.
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~--~~~l--------~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~  109 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG--IQYL--------PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLK  109 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGT
T ss_pred             hcCcccEEEccCCCcccChh--HhcC--------CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhc
Confidence            45788999999998876632  2223        445899999999996544  8999999999999999984 34 489


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  164 (334)
                      .+++|++|++++|++++.  ..+..+++|++|++++|++++.  .  .+..+++|+.|++++|.+++..+   +      
T Consensus       110 ~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~L~~N~l~~~~~---l------  174 (291)
T 1h6t_A          110 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISDIVP---L------  174 (291)
T ss_dssp             TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G--GGGGCTTCSEEECCSSCCCCCGG---G------
T ss_pred             cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h--hhccCCCCCEEEccCCccccchh---h------
Confidence            999999999999999884  4688999999999999999754  2  34789999999999999987543   1      


Q ss_pred             hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                                                           ..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++
T Consensus       175 -------------------------------------~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          175 -------------------------------------AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -------------------------------------TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -------------------------------------cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence                                                 126789999999999984 55 48999999999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=4.7e-21  Score=162.73  Aligned_cols=177  Identities=18%  Similarity=0.175  Sum_probs=145.0

Q ss_pred             cCCCcccEEEcCCCC-CCCCCCCCCCCCCeEECCCCCCCCEEeCCC-CcCccccCcCccCCCCccEEeCCCCccccCCCc
Q 019924            4 LGIATLYYLDLSNNF-LTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP   81 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~   81 (334)
                      .++++|++|++++|. ++++++..+.++..|        ++|++++ |++++..+..|.++++|++|++++|++++ +|.
T Consensus        52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L--------~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~  122 (239)
T 2xwt_C           52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKV--------THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD  122 (239)
T ss_dssp             TTCTTCCEEEEECCSSCCEECTTTEESCTTC--------CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC
T ss_pred             cCCCCCcEEeCCCCCCcceeCHhHcCCCcCC--------cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc
Confidence            368999999999997 988877666666555        9999998 99997777899999999999999999995 676


Q ss_pred             cccCCCCCC---EEEccCC-cCCcCCChhhhcCCCCC-EEEeecccCcccCCCCCCCCCCCCccEEEecCCc-cccccch
Q 019924           82 SLVNCHHLE---VLNVGNN-QINDNFPNWLEILPELQ-VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLT  155 (334)
Q Consensus        82 ~l~~l~~L~---~L~Ls~N-~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~  155 (334)
                       +..+++|+   +|++++| .+++..+..|..+++|+ +|++++|+++ .++... +.. ++|+.|++++|+ +++..+.
T Consensus       123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~-~~~-~~L~~L~L~~n~~l~~i~~~  198 (239)
T 2xwt_C          123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA-FNG-TKLDAVYLNKNKYLTVIDKD  198 (239)
T ss_dssp             -CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT-TTT-CEEEEEECTTCTTCCEECTT
T ss_pred             -cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh-cCC-CCCCEEEcCCCCCcccCCHH
Confidence             88899998   9999999 99997778899999999 9999999997 455433 233 899999999995 8754332


Q ss_pred             hhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhh-hheeEEEccCcccccCCchhhhCcCCCCee
Q 019924          156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL-TIFMTIDLSSNKFQGGIPEVVGKLNLLKGL  234 (334)
Q Consensus       156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  234 (334)
                      . +                                           ..+ ++|+.|++++|+++ .+|..  .+++|+.|
T Consensus       199 ~-~-------------------------------------------~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L  231 (239)
T 2xwt_C          199 A-F-------------------------------------------GGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKEL  231 (239)
T ss_dssp             T-T-------------------------------------------TTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEE
T ss_pred             H-h-------------------------------------------hccccCCcEEECCCCccc-cCChh--HhccCcee
Confidence            2 1                                           125 67999999999998 45544  67889999


Q ss_pred             eccCCc
Q 019924          235 NISHNN  240 (334)
Q Consensus       235 ~Ls~N~  240 (334)
                      +++++.
T Consensus       232 ~l~~~~  237 (239)
T 2xwt_C          232 IARNTW  237 (239)
T ss_dssp             ECTTC-
T ss_pred             eccCcc
Confidence            998763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=6e-21  Score=168.27  Aligned_cols=171  Identities=18%  Similarity=0.201  Sum_probs=135.1

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  118 (334)
                      ++|++|++++|.++. +| .+..+++|++|++++|++++. +. +.++++|++|++++|++++. + .+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence            455889999999984 45 688999999999999999954 44 99999999999999999883 3 6889999999999


Q ss_pred             ecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccch
Q 019924          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI  198 (334)
Q Consensus       119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (334)
                      ++|++++..+    +..+++|+.|++++|.+++..+   +..+++|+.++...+.+                   ..++.
T Consensus       115 ~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l-------------------~~~~~  168 (308)
T 1h6u_A          115 TSTQITDVTP----LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQV-------------------SDLTP  168 (308)
T ss_dssp             TTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCC-------------------CCCGG
T ss_pred             CCCCCCCchh----hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcC-------------------CCChh
Confidence            9999976432    4889999999999999987654   44555554444422211                   11222


Q ss_pred             hhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       199 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                        +..+++|+.|++++|++++..+  +..+++|+.|++++|+++++.
T Consensus       169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence              4457899999999999985433  889999999999999998765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=9.3e-21  Score=167.25  Aligned_cols=197  Identities=15%  Similarity=0.092  Sum_probs=142.7

Q ss_pred             CCCeEECCCC----------------CCCCEEeCCCCcCccccCcCc--cCCCCccEEeCCCCccccCCC----ccccCC
Q 019924           29 NMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKF--VKSCNLTSLNLNGNRLEGPLP----PSLVNC   86 (334)
Q Consensus        29 ~L~~L~l~~n----------------~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l   86 (334)
                      .++.+.+.++                ++|++|++++|++++..|..+  ..+++|++|++++|++++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            3566777665                569999999999999999888  899999999999999997555    345578


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCccc--CCCCCCCCCCCCccEEEecCCccccccc--hhhHHhHH
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP--IGENTTIVPFPSLRIIDLSHNEFTGVLL--TGYLDNFK  162 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~l~  162 (334)
                      ++|++|++++|++++..+..++.+++|++|++++|++.+.  ++....+..+++|++|++++|+++....  ...+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            9999999999999998888999999999999999997653  2222223678999999999999974322  11234455


Q ss_pred             hhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924          163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       163 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                      +|+.++...+.+....+...                .....+++|++|+|++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~----------------~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSA----------------PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCC----------------SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             CCCEEECCCCCCCccchhhH----------------HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence            55555443332222100000                00001367888888888888 6676664  78888888888887


Q ss_pred             CC
Q 019924          243 GL  244 (334)
Q Consensus       243 ~l  244 (334)
                      ++
T Consensus       286 ~~  287 (310)
T 4glp_A          286 RA  287 (310)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=2.6e-19  Score=149.96  Aligned_cols=141  Identities=22%  Similarity=0.267  Sum_probs=114.2

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (334)
                      +.++++++.++.++..-.++++.|++++|             ++|++|+|++|++++..|..|.++++|++|+|++|+++
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            34566666666555444455555555555             45699999999999888999999999999999999999


Q ss_pred             cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924           77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      ...+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..+  ..+++|+.|++++|.+...
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECS
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCC
Confidence            6666678889999999999999999888899999999999999999987666545  7889999999999998754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=9.7e-22  Score=178.85  Aligned_cols=219  Identities=16%  Similarity=0.134  Sum_probs=156.0

Q ss_pred             CCCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC-----------------------CCCCEEeCCCCcCcc-
Q 019924            5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNG-   53 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n-----------------------~~L~~L~Ls~N~l~~-   53 (334)
                      .+++|++|++++|.++...+       ..+++|+.|++++|                       ++|++|+|++|.+++ 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            46889999999999886532       46788999988875                       678999999999986 


Q ss_pred             ---ccCcCccCCCCccEEeCCCCccccCCCcc----ccCC---------CCCCEEEccCCcCC-cCCC---hhhhcCCCC
Q 019924           54 ---KIPRKFVKSCNLTSLNLNGNRLEGPLPPS----LVNC---------HHLEVLNVGNNQIN-DNFP---NWLEILPEL  113 (334)
Q Consensus        54 ---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l---------~~L~~L~Ls~N~l~-~~~~---~~l~~l~~L  113 (334)
                         .+|..+..+++|++|++++|.++...+..    +..+         ++|++|++++|+++ ...+   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               46778888899999999999987443333    3333         89999999999987 3344   356688899


Q ss_pred             CEEEeecccCcc-----cCCCCCCCCCCCCccEEEecCCcccc----ccchhhHHhHHhhhhcCCcccccccccCCCCCC
Q 019924          114 QVLILRSNRFWG-----PIGENTTIVPFPSLRIIDLSHNEFTG----VLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN  184 (334)
Q Consensus       114 ~~L~L~~N~l~~-----~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~  184 (334)
                      ++|++++|+++.     ..+..+  ..+++|+.|++++|.++.    .++. .+..+++|..++...+            
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n------------  254 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDC------------  254 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTC------------
T ss_pred             CEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCC------------
Confidence            999999998862     223233  678899999999998863    2221 2333333333332111            


Q ss_pred             ceeeEEEEEeccc----hhhhhh--hhheeEEEccCccccc----CCchhh-hCcCCCCeeeccCCccCCCC
Q 019924          185 YYESIILTIKGID----IKMERI--LTIFMTIDLSSNKFQG----GIPEVV-GKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       185 ~l~~~~~~~~~~~----~~~~~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~l~  245 (334)
                             .+....    ...+..  +++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..
T Consensus       255 -------~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          255 -------LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             -------CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             -------CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                   111111    112212  6889999999999997    478877 66899999999999998655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=2.2e-19  Score=171.97  Aligned_cols=212  Identities=19%  Similarity=0.215  Sum_probs=107.4

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP   78 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~   78 (334)
                      +++.|++++|.++.++...+++|+.|++++|         ++|++|++++|+++ .+|.   .+++|++|++++|++++ 
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-  115 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-  115 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-
T ss_pred             CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-
Confidence            4566666666666555444456666666666         45666666666665 3333   44566666666666653 


Q ss_pred             CCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCC-CC--------------CCCCCccEEE
Q 019924           79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT-TI--------------VPFPSLRIID  143 (334)
Q Consensus        79 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~--------------~~l~~L~~L~  143 (334)
                      +|.   .+++|+.|++++|+++. +|..   +++|++|++++|++++. +... .+              ..+++|+.|+
T Consensus       116 l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~  187 (622)
T 3g06_A          116 LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSGLQELS  187 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCCCcEEE
Confidence            333   34555555555555554 2321   25555555555555431 1110 00              1236667777


Q ss_pred             ecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCch
Q 019924          144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE  223 (334)
Q Consensus       144 Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  223 (334)
                      +++|.+++... . ..++..|   ....+.+..++..  ...+..+.+..+.+.. ....+++|+.|+|++|+|+ .+|.
T Consensus       188 Ls~N~l~~l~~-~-~~~L~~L---~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~  258 (622)
T 3g06_A          188 VSDNQLASLPT-L-PSELYKL---WAYNNRLTSLPAL--PSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM  258 (622)
T ss_dssp             CCSSCCSCCCC-C-CTTCCEE---ECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC
T ss_pred             CCCCCCCCCCC-c-cchhhEE---ECcCCcccccCCC--CCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCc
Confidence            77777665322 1 2222222   2211122222111  1122222222222221 1134567888888888887 4554


Q ss_pred             hhhCcCCCCeeeccCCccCCC
Q 019924          224 VVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       224 ~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                         .+++|+.|++++|+|+.+
T Consensus       259 ---~~~~L~~L~Ls~N~L~~l  276 (622)
T 3g06_A          259 ---LPSGLLSLSVYRNQLTRL  276 (622)
T ss_dssp             ---CCTTCCEEECCSSCCCSC
T ss_pred             ---ccccCcEEeCCCCCCCcC
Confidence               567788888888887754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=3.8e-21  Score=173.43  Aligned_cols=145  Identities=23%  Similarity=0.233  Sum_probs=71.3

Q ss_pred             CcccEEEcCCCCCCCCCC-------CCCC-CCCeEECCCC------------------CCCCEEeCCCCcCccccCcCc-
Q 019924            7 ATLYYLDLSNNFLTNIEY-------FPPT-NMTQLNFDSN------------------LTHKVLDMRMNNFNGKIPRKF-   59 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~-------~~~~-~L~~L~l~~n------------------~~L~~L~Ls~N~l~~~~p~~~-   59 (334)
                      ++|++||+++|.+++..+       ..++ +|++|++++|                  ++|++|++++|++++..+..+ 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            347777777777766553       2233 5656655555                  245555666555554443322 


Q ss_pred             ---cCC-CCccEEeCCCCccccCCCccc----cC-CCCCCEEEccCCcCCcCCC----hhhhcCC-CCCEEEeecccCcc
Q 019924           60 ---VKS-CNLTSLNLNGNRLEGPLPPSL----VN-CHHLEVLNVGNNQINDNFP----NWLEILP-ELQVLILRSNRFWG  125 (334)
Q Consensus        60 ---~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~~~~~----~~l~~l~-~L~~L~L~~N~l~~  125 (334)
                         ..+ ++|++|++++|++++..+..+    .. .++|++|++++|.+++..+    ..+..++ +|++|++++|++++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence               222 555556665555554433222    22 2455556666555553222    2223333 55566665555543


Q ss_pred             cCCCCC--CCCCC-CCccEEEecCCcccc
Q 019924          126 PIGENT--TIVPF-PSLRIIDLSHNEFTG  151 (334)
Q Consensus       126 ~~~~~~--~~~~l-~~L~~L~Ls~N~l~~  151 (334)
                      ..+..+  .+..+ ++|+.|++++|.+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            322111  01222 355566666655554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=1.1e-20  Score=168.38  Aligned_cols=183  Identities=16%  Similarity=0.166  Sum_probs=108.2

Q ss_pred             CCCCEEeCCCCcCccc-cCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCC-cCCc-CCChhhhcCCCCCE
Q 019924           39 LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN-QIND-NFPNWLEILPELQV  115 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~-~~~~~l~~l~~L~~  115 (334)
                      ++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|++|++++| .+++ .++..+..+++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            4557777777777654 6666777777777777777777666667777777777777777 5654 24555667777777


Q ss_pred             EEeecc-cCccc-CCCCCCCCCCC-CccEEEecCC--ccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEE
Q 019924          116 LILRSN-RFWGP-IGENTTIVPFP-SLRIIDLSHN--EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII  190 (334)
Q Consensus       116 L~L~~N-~l~~~-~~~~~~~~~l~-~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~  190 (334)
                      |++++| .+++. ++..+  ..++ +|+.|++++|  .+++......+..+++|+.++......                
T Consensus       173 L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----------------  234 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM----------------  234 (336)
T ss_dssp             EECCCCTTCCHHHHHHHH--HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT----------------
T ss_pred             EcCCCCCCcChHHHHHHH--HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc----------------
Confidence            777777 66532 22222  5566 7777777777  343211112234444444333311110                


Q ss_pred             EEEeccchhhhhhhhheeEEEccCcc-cccCCchhhhCcCCCCeeeccCCccC
Q 019924          191 LTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       191 ~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                        +.......+..+++|+.|++++|. ++......+.++++|+.|++++| ++
T Consensus       235 --l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          235 --LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             --CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             --CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence              001111222345777788888774 33232335677778888888877 44

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=1.4e-19  Score=173.09  Aligned_cols=172  Identities=22%  Similarity=0.262  Sum_probs=138.4

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      .+++|+.|++++|.+..++.  +..+        ++|+.|+|++|++++..|  +..+++|+.|+|++|++++ +| .+.
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~--l~~l--------~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~  106 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQG--IQYL--------PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLK  106 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTT--GGGC--------TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TST
T ss_pred             cCCCCCEEECcCCCCCCChH--HccC--------CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhc
Confidence            35778888888888776532  2222        455899999999986554  8899999999999999984 44 688


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  164 (334)
                      .+++|++|+|++|.+.+.  ..+..+++|+.|+|++|++++.  .  .+..+++|+.|+|++|.+.+..+   +.     
T Consensus       107 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~~~~---l~-----  172 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISDIVP---LA-----  172 (605)
T ss_dssp             TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G--GGGSCTTCSEEECCSSCCCCCGG---GT-----
T ss_pred             cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h--hhcccCCCCEEECcCCcCCCchh---hc-----
Confidence            999999999999999873  4588999999999999999754  2  34789999999999999987644   11     


Q ss_pred             hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                                                            .+++|+.|+|++|+|++ +| .+..+++|+.|+|++|++++.
T Consensus       173 --------------------------------------~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          173 --------------------------------------GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             --------------------------------------TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             --------------------------------------cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence                                                  26789999999999985 44 688999999999999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=1.2e-19  Score=149.39  Aligned_cols=151  Identities=15%  Similarity=0.169  Sum_probs=113.9

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  118 (334)
                      ++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..++.+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            45688888888887 555 5788888888888888776  2346788888888888888888766777888888888888


Q ss_pred             ecccCcccCCCCCCCCCCCCccEEEecCCc-cccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccc
Q 019924          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID  197 (334)
Q Consensus       119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (334)
                      ++|++++..+..+  ..+++|+.|++++|. ++.. + .                                         
T Consensus       120 s~n~i~~~~~~~l--~~l~~L~~L~L~~n~~i~~~-~-~-----------------------------------------  154 (197)
T 4ezg_A          120 SHSAHDDSILTKI--NTLPKVNSIDLSYNGAITDI-M-P-----------------------------------------  154 (197)
T ss_dssp             CSSBCBGGGHHHH--TTCSSCCEEECCSCTBCCCC-G-G-----------------------------------------
T ss_pred             cCCccCcHhHHHH--hhCCCCCEEEccCCCCcccc-H-h-----------------------------------------
Confidence            8888876555544  678888888888887 5433 1 1                                         


Q ss_pred             hhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       198 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                         +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus       155 ---l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          155 ---LKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ---GGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ---hcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence               1126778899999999984 44 78889999999999998753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.80  E-value=2.6e-20  Score=167.96  Aligned_cols=220  Identities=17%  Similarity=0.176  Sum_probs=144.7

Q ss_pred             EEEcCCCCCCCCCC---CCCCCCCeEECCCC-----------------C-CCCEEeCCCCcCccccCcCccCC-----CC
Q 019924           11 YLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------L-THKVLDMRMNNFNGKIPRKFVKS-----CN   64 (334)
Q Consensus        11 ~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-----------------~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~   64 (334)
                      ++++++|.+++..+   ...++|++|++++|                 + +|++|++++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            57899999998776   55566999999988                 3 78999999999887767666664     88


Q ss_pred             ccEEeCCCCccccCCCcc----ccCC-CCCCEEEccCCcCCcCCChhhh----c-CCCCCEEEeecccCcccCCCCC--C
Q 019924           65 LTSLNLNGNRLEGPLPPS----LVNC-HHLEVLNVGNNQINDNFPNWLE----I-LPELQVLILRSNRFWGPIGENT--T  132 (334)
Q Consensus        65 L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~Ls~N~l~~~~~~~l~----~-l~~L~~L~L~~N~l~~~~~~~~--~  132 (334)
                      |++|++++|++++..+..    +..+ ++|++|++++|++++..+..+.    . .++|++|++++|++++.....+  .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999988665553    3444 7899999999998876665543    3 3689999999998864322111  1


Q ss_pred             CCCCC-CccEEEecCCccccccchhhHHhHH----hhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhhe
Q 019924          133 IVPFP-SLRIIDLSHNEFTGVLLTGYLDNFK----AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIF  207 (334)
Q Consensus       133 ~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~----~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L  207 (334)
                      +..++ +|+.|++++|++++..+..+...+.    +|+.++...+.+...              ....+........++|
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~--------------~~~~l~~~l~~~~~~L  227 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK--------------SYAELAYIFSSIPNHV  227 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS--------------CHHHHHHHHHHSCTTC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh--------------HHHHHHHHHhcCCCCc
Confidence            13344 8899999999888766544322222    232222211111100              0000111111223588


Q ss_pred             eEEEccCcccccCCc----hhhhCcCCCCeeeccCCccCCC
Q 019924          208 MTIDLSSNKFQGGIP----EVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       208 ~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ++|||++|.+++..+    ..+..+++|+.|++++|.++++
T Consensus       228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i  268 (362)
T 3goz_A          228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM  268 (362)
T ss_dssp             CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred             eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence            999999999886554    3346678899999999986543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=1e-18  Score=147.36  Aligned_cols=141  Identities=22%  Similarity=0.158  Sum_probs=104.5

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCC-------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (334)
                      +.++.+++.++.++....++|+.|++++|             ++|++|+|++|+++...+..|..+++|++|++++|+++
T Consensus        22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT  101 (229)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence            44555555555554444444544444444             45588888888888666677888888999999999888


Q ss_pred             cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924           77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus        77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      +..+..|..+++|++|++++|+++. +|..+..+++|++|++++|++++..+..+  ..+++|+.|++++|.+....
T Consensus       102 ~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          102 VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBCTTB
T ss_pred             ccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCccCCc
Confidence            7666777888889999999998885 67778888889999999988875554444  77888889999988887543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=2.2e-20  Score=160.91  Aligned_cols=171  Identities=18%  Similarity=0.305  Sum_probs=133.2

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      ++.+++.+++++|.++++..  +..+        ++|++|++++|+++ .+| .+..+++|++|++++|++++. +. +.
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~--~~~l--------~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~   82 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVS--QKEL--------SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LK   82 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEEC--HHHH--------TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred             HHHHHHHHHhcCCCcccccc--hhhc--------CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hc
Confidence            45667778888888876542  2223        34488899999988 455 688899999999999999854 43 88


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  164 (334)
                      ++++|++|++++|++++ +|.. .. ++|++|++++|++++. + .  +..+++|+.|++++|++++...   +      
T Consensus        83 ~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~--l~~l~~L~~L~Ls~N~i~~~~~---l------  146 (263)
T 1xeu_A           83 DLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-S--LIHLKNLEILSIRNNKLKSIVM---L------  146 (263)
T ss_dssp             TCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-G--GTTCTTCCEEECTTSCCCBCGG---G------
T ss_pred             cCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-h--hcCcccccEEECCCCcCCCChH---H------
Confidence            99999999999999988 4433 23 8899999999998753 2 2  4789999999999999886421   1      


Q ss_pred             hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                                                           ..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       147 -------------------------------------~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          147 -------------------------------------GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -------------------------------------GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -------------------------------------ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence                                                 1267789999999999865  6788999999999999998754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.80  E-value=1.1e-18  Score=142.96  Aligned_cols=133  Identities=22%  Similarity=0.217  Sum_probs=115.0

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCc-CccCCCCccEEeCCCCccccCCCccccCCCC
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPR-KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~   88 (334)
                      +++++++|.++.++.....           ++++|++++|++++..+. .|..+++|++|++++|++++..|..|.++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~-----------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL-----------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT-----------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEcCCCCcCcCccCCCC-----------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence            6899999999877653333           237889999999866654 4899999999999999999888999999999


Q ss_pred             CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccch
Q 019924           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT  155 (334)
Q Consensus        89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  155 (334)
                      |++|++++|++++..+..|..+++|++|++++|++++..+..+  ..+++|+.|++++|.+.+..+.
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcc
Confidence            9999999999999888889999999999999999988878766  8899999999999999876543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=2.5e-19  Score=147.55  Aligned_cols=140  Identities=17%  Similarity=0.213  Sum_probs=96.5

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      .+++|++|++++|.++.++. ..+++|+.|++++|           ++|++|++++|++++..+..+..+++|++|++++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            46789999999999987654 55677777777766           5677777777777766666777777777777777


Q ss_pred             CccccCCCccccCCCCCCEEEccCCc-CCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924           73 NRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus        73 n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      |++++..|..+..+++|++|++++|. ++. +| .+..+++|++|++++|++++. +   .+..+++|+.|++++|++.
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~---~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R---GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T---TGGGCSSCCEEEECBC---
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H---HhccCCCCCEEEeeCcccC
Confidence            77776566667777777777777776 544 33 466777777777777776542 2   2356677777777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=5.1e-19  Score=159.40  Aligned_cols=140  Identities=29%  Similarity=0.230  Sum_probs=119.4

Q ss_pred             CcccEEEcCCCCCCCCCCCCCC-CCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccC
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN   85 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~-~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~   85 (334)
                      +.++.|+|++|.++++++..+. ++..|        ++|+|++|+|++..+..|..+++|++|+|++|+++...+..|.+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L--------~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  110 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNL--------HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD  110 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTC--------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCCCEEECCCCCCCccChhhhhhccccc--------CEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC
Confidence            4589999999999998876665 66555        99999999999888889999999999999999999877888999


Q ss_pred             CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCC-CCCCCCccEEEecCCccccccc
Q 019924           86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT-IVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus        86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      +++|++|+|++|+++...|..|..+++|++|+|++|++++..+..+. +..+++|+.|++++|.+++..+
T Consensus       111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred             CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence            99999999999999998889999999999999999999754333221 1468999999999999986543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=1.6e-20  Score=174.57  Aligned_cols=237  Identities=17%  Similarity=0.170  Sum_probs=129.6

Q ss_pred             CCCcccEEEcCCCCCCCCCC--------CCCCCCCeEECCCC-----------------CCCCEEeCCCCcCccccCcCc
Q 019924            5 GIATLYYLDLSNNFLTNIEY--------FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKF   59 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~--------~~~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~~p~~~   59 (334)
                      ++++|++|++++|.+++..+        ...++|++|++++|                 ++|++|++++|.++...+..+
T Consensus       111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  190 (461)
T 1z7x_W          111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL  190 (461)
T ss_dssp             SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred             cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence            56777777777777764322        22446777777776                 567777777777664433333


Q ss_pred             c-----CCCCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcCC-----ChhhhcCCCCCEEEeecccCcc
Q 019924           60 V-----KSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNF-----PNWLEILPELQVLILRSNRFWG  125 (334)
Q Consensus        60 ~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-----~~~l~~l~~L~~L~L~~N~l~~  125 (334)
                      .     ..++|++|++++|.++..    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|++++
T Consensus       191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            2     245677777777776643    3555566677777777777665422     1222245667777777776643


Q ss_pred             c----CCCCCCCCCCCCccEEEecCCccccccchhhHHhH----HhhhhcCCcccccccc-----c-CCCCCCceeeEEE
Q 019924          126 P----IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNF----KAMMHGNNISVEVDYM-----T-PLNSSNYYESIIL  191 (334)
Q Consensus       126 ~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l----~~L~~~~~~~~~~~~~-----~-~~~~~~~l~~~~~  191 (334)
                      .    ++..+  ..+++|+.|++++|.+.+..+..+...+    +.|+.++...+.+...     . .......+..+++
T Consensus       271 ~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  348 (461)
T 1z7x_W          271 KGCGDLCRVL--RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI  348 (461)
T ss_dssp             HHHHHHHHHH--HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHHHH--hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence            2    22222  3456666777776666543322221111    1222222211111100     0 0000112223333


Q ss_pred             EEeccchhh---h-hh----hhheeEEEccCccccc----CCchhhhCcCCCCeeeccCCccCC
Q 019924          192 TIKGIDIKM---E-RI----LTIFMTIDLSSNKFQG----GIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       192 ~~~~~~~~~---~-~~----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                      ..+.+....   . ..    .++|+.|++++|.+++    .+|..+..+++|++|++++|++++
T Consensus       349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            333332221   1 11    4588888888888885    677788888888888888888875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=7.4e-19  Score=157.69  Aligned_cols=129  Identities=14%  Similarity=0.090  Sum_probs=86.6

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCC-ccccCCCC
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP-PSLVNCHH   88 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~   88 (334)
                      ++++.++++++.++..-++++           ++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l-----------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNA-----------IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTC-----------SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             CEEEecCCCCCccCcCcCCCC-----------CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            567888888887764333333           667777788875555677888888888888887754443 45677777


Q ss_pred             CCE-EEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecC-Ccccc
Q 019924           89 LEV-LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH-NEFTG  151 (334)
Q Consensus        89 L~~-L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~  151 (334)
                      +++ +.++.|+++...|..|..+++|++|++++|++.+..+..+  ....++..|++.+ +.+..
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCE
T ss_pred             hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhcccccccc
Confidence            664 5556677777667777788888888888887765443333  4555667777755 34443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=2.2e-20  Score=166.55  Aligned_cols=182  Identities=16%  Similarity=0.146  Sum_probs=139.3

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccC-CCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEE
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI  117 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  117 (334)
                      +.++.|++++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4558899999999976655 56799999999999999865 788889999999999999999887888899999999999


Q ss_pred             eecc-cCccc-CCCCCCCCCCCCccEEEecCC-ccccccchhhHHhHH-hhhhcCCcccccccccCCCCCCceeeEEEEE
Q 019924          118 LRSN-RFWGP-IGENTTIVPFPSLRIIDLSHN-EFTGVLLTGYLDNFK-AMMHGNNISVEVDYMTPLNSSNYYESIILTI  193 (334)
Q Consensus       118 L~~N-~l~~~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~-~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (334)
                      +++| .+++. ++..+  ..+++|++|++++| .+++......+..++ +|+.++.......                 +
T Consensus       149 L~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~-----------------~  209 (336)
T 2ast_B          149 LSGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-----------------L  209 (336)
T ss_dssp             CTTCBSCCHHHHHHHH--HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-----------------S
T ss_pred             CCCCCCCCHHHHHHHH--hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc-----------------C
Confidence            9999 67542 33323  67899999999999 887643233355555 5544443211000                 0


Q ss_pred             e-ccchhhhhhhhheeEEEccCcc-cccCCchhhhCcCCCCeeeccCCc
Q 019924          194 K-GIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNN  240 (334)
Q Consensus       194 ~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~  240 (334)
                      . ..-......+++|+.|++++|. +++..+..+.++++|+.|++++|.
T Consensus       210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            0 0012234458899999999999 787888899999999999999995

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.9e-18  Score=163.70  Aligned_cols=161  Identities=25%  Similarity=0.276  Sum_probs=133.5

Q ss_pred             CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (334)
                      +++|++|++++|.|+.++ ..+++|+.|++++|         .+|++|++++|++++ +|.   .+++|+.|++++|+++
T Consensus        79 ~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A           79 PPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             CTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             cCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence            367999999999999877 77899999999999         289999999999996 666   6899999999999999


Q ss_pred             cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCc-------cEEEecCCcc
Q 019924           77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL-------RIIDLSHNEF  149 (334)
Q Consensus        77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-------~~L~Ls~N~l  149 (334)
                      + +|.   .+++|++|++++|++++ +|. +.  ++|+.|++++|+|+ .+|. +  ..  +|       +.|++++|.+
T Consensus       154 ~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~--~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          154 M-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V--PV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             C-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C--C----------CCEEEECCSSCC
T ss_pred             c-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H--HH--hhhcccccceEEecCCCcc
Confidence            5 665   57899999999999998 666 65  99999999999997 5555 4  32  66       9999999999


Q ss_pred             ccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924          150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN  229 (334)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  229 (334)
                      +.. |...+                                            .+++|+.|+|++|.+++.+|..+..++
T Consensus       220 ~~l-p~~l~--------------------------------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          220 THI-PENIL--------------------------------------------SLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CCC-CGGGG--------------------------------------------GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             eec-CHHHh--------------------------------------------cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            853 33211                                            167789999999999999999887764


Q ss_pred             C
Q 019924          230 L  230 (334)
Q Consensus       230 ~  230 (334)
                      .
T Consensus       255 ~  255 (571)
T 3cvr_A          255 A  255 (571)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.76  E-value=5.7e-21  Score=177.62  Aligned_cols=240  Identities=15%  Similarity=0.097  Sum_probs=146.6

Q ss_pred             CCCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC--------------C----CCCEEeCCCCcCcc----cc
Q 019924            5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN--------------L----THKVLDMRMNNFNG----KI   55 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n--------------~----~L~~L~Ls~N~l~~----~~   55 (334)
                      .+++|++|++++|.++....       ..+++|++|++++|              +    +|++|++++|+++.    .+
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            46788889999888874321       45678889999888              2    68999999998884    45


Q ss_pred             CcCccCCCCccEEeCCCCccccCCCccc-----cCCCCCCEEEccCCcCCcCC----ChhhhcCCCCCEEEeecccCccc
Q 019924           56 PRKFVKSCNLTSLNLNGNRLEGPLPPSL-----VNCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFWGP  126 (334)
Q Consensus        56 p~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~  126 (334)
                      +..+..+++|++|++++|.+++..+..+     ...++|++|++++|++++..    +..+..+++|++|++++|.+++.
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            7788888899999999998874433322     23567999999999887643    45566788999999999987543


Q ss_pred             CCCCCC---CCCCCCccEEEecCCccccccch---hhHHhHHhhhhcCCcccccccc------cCC-CCCCceeeEEEEE
Q 019924          127 IGENTT---IVPFPSLRIIDLSHNEFTGVLLT---GYLDNFKAMMHGNNISVEVDYM------TPL-NSSNYYESIILTI  193 (334)
Q Consensus       127 ~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~~~~~~~~~~~~------~~~-~~~~~l~~~~~~~  193 (334)
                      .+..+.   ....++|+.|++++|.+++....   ..+..++.|+.++...+.+...      ... .....++.+.+..
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence            222110   01256889999999988764211   2234445555444433222110      000 0112222222222


Q ss_pred             eccch-------hhhhhhhheeEEEccCcccccCCchhhhCc-----CCCCeeeccCCccCCC
Q 019924          194 KGIDI-------KMERILTIFMTIDLSSNKFQGGIPEVVGKL-----NLLKGLNISHNNLTGL  244 (334)
Q Consensus       194 ~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~l  244 (334)
                      +.+..       ..+..+++|++|++++|.+++..+..+...     ++|+.|++++|.+++.
T Consensus       266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence            22222       122235667777777776665444444322     5677777777776643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=4e-18  Score=148.92  Aligned_cols=128  Identities=27%  Similarity=0.307  Sum_probs=109.6

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      .+++|++|++++|.+++.++  +..+.        +|++|++++|++++ +| .+..+++|++|++++|++++.  +.+.
T Consensus        66 ~l~~L~~L~L~~n~l~~~~~--l~~l~--------~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~  131 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIKP--LANLK--------NLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLV  131 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCT--------TCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGG
T ss_pred             cCCCCCEEEccCCccCCCcc--cccCC--------CCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhc
Confidence            57899999999999998765  44444        44999999999985 33 489999999999999999853  5688


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      .+++|++|++++|++++.  ..+..+++|++|++++|++++..+    +..+++|+.|++++|.+++.
T Consensus       132 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCCC
Confidence            999999999999999884  678999999999999999976554    47899999999999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=6e-18  Score=138.61  Aligned_cols=108  Identities=24%  Similarity=0.253  Sum_probs=77.1

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCc-cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      +++++++|+++ .+|..+..  ++++|++++|++++..+. .|.++++|++|++++|++++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67788888876 56665543  778888888888755543 377778888888888888777677777777888888888


Q ss_pred             ccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus       121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      |++++..+..+  ..+++|++|++++|++++..+
T Consensus        88 N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           88 NKIKEISNKMF--LGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             CCCCEECSSSS--TTCTTCCEEECCSSCCCEECT
T ss_pred             CcCCccCHHHh--cCCCCCCEEECCCCcCCeeCH
Confidence            87766655544  667777777777777765543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=2.9e-17  Score=134.56  Aligned_cols=131  Identities=20%  Similarity=0.163  Sum_probs=114.5

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCC
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L   89 (334)
                      +++++++|.++.++...+++           +++|++++|+++ .+|..|..+++|+.|++++|+|++..+..|.++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~-----------l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRD-----------VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTT-----------CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEcCCCCCCcCCCCCCCC-----------CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            67999999999876543333           378899999998 778999999999999999999998888899999999


Q ss_pred             CEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924           90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus        90 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      ++|++++|++++..+..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|.+...-.
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGG
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCc
Confidence            999999999999888899999999999999999976555444  789999999999999976433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.2e-17  Score=159.57  Aligned_cols=158  Identities=25%  Similarity=0.264  Sum_probs=128.0

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      .+++|+.|+|++|.++++++  +..+        ++|+.|+|++|++++ +| .+..+++|+.|+|++|++++ + +.+.
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~--l~~l--------~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~  128 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP--LTNL--------KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLV  128 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG--GGGC--------TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGG
T ss_pred             cCCCCCEEEeeCCCCCCChh--hccC--------CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-cccc
Confidence            57999999999999998765  3333        445999999999985 33 78999999999999999985 3 4688


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  164 (334)
                      .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+..+    +..+++|+.|+|++|.+++...   +      
T Consensus       129 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l~~---l------  193 (605)
T 1m9s_A          129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLRA---L------  193 (605)
T ss_dssp             GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBCGG---G------
T ss_pred             CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCChH---H------
Confidence            999999999999999885  678899999999999999987655    3789999999999999986411   1      


Q ss_pred             hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCc
Q 019924          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL  228 (334)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  228 (334)
                                                           ..+++|+.|+|++|.+++.....+..+
T Consensus       194 -------------------------------------~~l~~L~~L~L~~N~l~~~p~~~~~~l  220 (605)
T 1m9s_A          194 -------------------------------------AGLKNLDVLELFSQECLNKPINHQSNL  220 (605)
T ss_dssp             -------------------------------------TTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred             -------------------------------------ccCCCCCEEEccCCcCcCCcccccccE
Confidence                                                 126778999999999986544433433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.74  E-value=9.3e-20  Score=165.71  Aligned_cols=43  Identities=12%  Similarity=0.088  Sum_probs=33.8

Q ss_pred             hhhhhheeEEEccCcccccC----CchhhhC--cCCCCeeeccCCccCC
Q 019924          201 ERILTIFMTIDLSSNKFQGG----IPEVVGK--LNLLKGLNISHNNLTG  243 (334)
Q Consensus       201 ~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~  243 (334)
                      +..+++|+.|+|++|.+++.    +|..+..  +++|+.|+|++|++++
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            44567899999999998865    5666644  8889999999998886

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=6.2e-17  Score=130.70  Aligned_cols=133  Identities=19%  Similarity=0.146  Sum_probs=114.1

Q ss_pred             ccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCC
Q 019924            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (334)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~   88 (334)
                      .+.+++++|.++.++...+++           |++|++++|++++..+..|..+++|++|++++|++++..+..+.++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~~~-----------l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIPSS-----------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCCTT-----------CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEecCCCCccCCCCCCCC-----------CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence            578999999998876544333           378899999999777778899999999999999999777777899999


Q ss_pred             CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus        89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      |++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|+.|++++|.+.+..+
T Consensus        78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred             cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence            9999999999999877788999999999999999986555434  779999999999999987644

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=8.4e-18  Score=134.65  Aligned_cols=80  Identities=28%  Similarity=0.270  Sum_probs=40.3

Q ss_pred             CEEeCCCCcCc-cccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           42 KVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        42 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      ++|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|++++
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  104 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG  104 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence            45555555554 34444455555555555555555432  3445555555555555555544444444455555555555


Q ss_pred             ccC
Q 019924          121 NRF  123 (334)
Q Consensus       121 N~l  123 (334)
                      |++
T Consensus       105 N~l  107 (168)
T 2ell_A          105 NKL  107 (168)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=8.2e-18  Score=164.46  Aligned_cols=112  Identities=23%  Similarity=0.265  Sum_probs=102.0

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  118 (334)
                      ..|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|.|+. +|..|+.+++|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEEC
Confidence            56799999999998 77877889999999999999999 889999999999999999999995 7999999999999999


Q ss_pred             ecccCcccCCCCCCCCCCCCccEEEecCCccccccchh
Q 019924          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG  156 (334)
Q Consensus       119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  156 (334)
                      ++|.++ .+|..+  ..+++|+.|+|++|.+++.++..
T Consensus       301 ~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          301 FDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             CSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHH
Confidence            999995 667665  89999999999999999877755

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=6.9e-17  Score=132.34  Aligned_cols=103  Identities=25%  Similarity=0.389  Sum_probs=53.1

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  121 (334)
                      +++++++|+++ .+|..+.  .+|++|++++|+++ .+|..|.++++|++|++++|++++..+..|..+++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45556666655 4444332  35556666666555 44555555555555555555555554455555555555555555


Q ss_pred             cCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      ++++..+..+  ..+++|+.|++++|.++
T Consensus        89 ~l~~i~~~~f--~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           89 RLRCIPPRTF--DGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             CCCBCCTTTT--TTCTTCCEEECCSSCCC
T ss_pred             ccCEeCHHHh--CCCCCCCEEECCCCCCC
Confidence            5544333322  44444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=9.9e-18  Score=134.21  Aligned_cols=137  Identities=20%  Similarity=0.089  Sum_probs=114.3

Q ss_pred             CCCcccEEEcCCCCCC-CCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924            5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l   83 (334)
                      ..++|+.|++++|.++ +..+..+..+..|        ++|++++|.+++.  ..+..+++|++|++++|++++.+|..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L--------~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNL--------EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGC--------CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCC--------CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence            4578999999999998 4444444555544        9999999999865  789999999999999999997788888


Q ss_pred             cCCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCC---CCCCCCCCCCccEEEecCCcccccc
Q 019924           84 VNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus        84 ~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      .++++|++|++++|.+++..+ ..+..+++|++|++++|++++..+   ..  +..+++|+.|++++|.+....
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV--FKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH--HTTCSSCCEETTEETTSCBCC
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH--HHhCccCcEecCCCCChhhcc
Confidence            889999999999999988432 788999999999999999975543   23  378999999999999987543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.4e-16  Score=137.08  Aligned_cols=137  Identities=21%  Similarity=0.294  Sum_probs=85.5

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      ++++|++|++++|.++.++. ..+++|+.|++++|           ++|++|++++|++++ +|.. .. ++|+.|++++
T Consensus        39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~  115 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDN  115 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCS
T ss_pred             hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccC
Confidence            46899999999999987764 45666666666666           456666666666663 2322 22 5666666666


Q ss_pred             CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      |++++. + .+..+++|++|++++|++++. + .+..+++|++|++++|++++.  ..  +..+++|+.|++++|.+.+.
T Consensus       116 N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~--l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          116 NELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG--LTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT--STTCCCCCEEEEEEEEEECC
T ss_pred             CccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH--hccCCCCCEEeCCCCcccCC
Confidence            666632 2 466666666666666666653 2 456666666666666666543  22  25566666666666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=1.8e-17  Score=130.03  Aligned_cols=82  Identities=22%  Similarity=0.198  Sum_probs=46.9

Q ss_pred             CCEEeCCCCcCc-cccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924           41 HKVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (334)
Q Consensus        41 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  119 (334)
                      ++.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+.++++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            355566666665 45555555666666666666666533  445556666666666666655455555555555555555


Q ss_pred             cccCc
Q 019924          120 SNRFW  124 (334)
Q Consensus       120 ~N~l~  124 (334)
                      +|+++
T Consensus        97 ~N~i~  101 (149)
T 2je0_A           97 GNKIK  101 (149)
T ss_dssp             TSCCC
T ss_pred             CCcCC
Confidence            55553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=1.9e-17  Score=129.83  Aligned_cols=130  Identities=22%  Similarity=0.161  Sum_probs=107.9

Q ss_pred             CCCcccEEEcCCCCCC-CCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924            5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l   83 (334)
                      ..++|+.|++++|.++ +..+..+..+..|        ++|++++|++++.  ..+..+++|++|++++|++++.+|..+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L--------~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~   84 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEEL--------EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA   84 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTC--------CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCC--------cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence            4578999999999998 4445444555444        9999999999865  788999999999999999997788888


Q ss_pred             cCCCCCCEEEccCCcCCcC-CChhhhcCCCCCEEEeecccCcccCC---CCCCCCCCCCccEEEecC
Q 019924           84 VNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSH  146 (334)
Q Consensus        84 ~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~Ls~  146 (334)
                      .++++|++|++++|++++. .+..++.+++|++|++++|++++..+   ..  +..+++|+.||+++
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~L~~L~l~d  149 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV--FKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHH--HHHCTTCCEETTBC
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHH--HHHCCCcccccCCC
Confidence            8899999999999999883 33788999999999999999976544   22  37789999998864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.69  E-value=3.5e-17  Score=146.79  Aligned_cols=138  Identities=15%  Similarity=0.022  Sum_probs=110.1

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccC-cCccCCCCccE-EeCCCCccccCCCcccc
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP-RKFVKSCNLTS-LNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~l~   84 (334)
                      +++++|+|++|+|+.+++..|.+|..|        ++|+|++|++.+.+| ..|.++++++. +.+++|+++...|..|.
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L--------~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~  101 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDL--------EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  101 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTC--------CEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCC--------CEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence            579999999999999888778887766        999999999866554 57889988775 66677999988888999


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec-ccCcccCCCCCCCCCC-CCccEEEecCCccccccc
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS-NRFWGPIGENTTIVPF-PSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~  154 (334)
                      ++++|++|++++|++....+..+....++..|++.+ +++....+..+  ..+ ..++.|++++|+++.+.+
T Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i~~i~~  171 (350)
T 4ay9_X          102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGIQEIHN  171 (350)
T ss_dssp             CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCCCEECT
T ss_pred             hccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccccccCCCh
Confidence            999999999999999987776777777888999976 45543333333  444 468999999999986543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=5.3e-18  Score=165.81  Aligned_cols=148  Identities=15%  Similarity=0.103  Sum_probs=84.9

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l   86 (334)
                      +.++.|+|++|.+...+.   ..++.++|+.| .+..++++.|.+. ..|..|..+..|+.|+|++|.+. .+|..+.++
T Consensus       173 ~~~~~l~L~~n~~~~~~~---~~l~~l~Ls~~-~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l  246 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQ---ALLQHKKLSQY-SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKY  246 (727)
T ss_dssp             ------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC
T ss_pred             CccceEEeeCCCCCcchh---hHhhcCccCcc-cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCC
Confidence            457788888888776433   22333444433 2356677777776 77889999999999999999998 778888899


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      ++|++|+|++|.++ .+|..|+.+++|++|+|++|+|+ .+|..+  ..+++|++|+|++|.++. +|.. +..+++|..
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~-lp~~-~~~l~~L~~  320 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLKYFYFFDNMVTT-LPWE-FGNLCNLQF  320 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCSEEECCSSCCCC-CCSS-TTSCTTCCC
T ss_pred             CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCCEEECCCCCCCc-cChh-hhcCCCccE
Confidence            99999999999999 58899999999999999999997 667765  889999999999999974 4444 444444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=3.4e-16  Score=126.39  Aligned_cols=105  Identities=18%  Similarity=0.243  Sum_probs=68.2

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  121 (334)
                      +.+++++|+++ .+|..+.  ++|+.|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            56777777776 4444332  56777777777777555556677777777777777777655556667777777777777


Q ss_pred             cCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                      ++++..+..+  ..+++|+.|++++|.+++
T Consensus        87 ~l~~~~~~~~--~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           87 KLQSLPNGVF--DKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             CCCCCCTTTT--TTCTTCCEEECCSSCCSC
T ss_pred             CccccCHHHh--hCCcccCEEECcCCcceE
Confidence            7765444333  556666666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=3.6e-18  Score=162.24  Aligned_cols=109  Identities=28%  Similarity=0.377  Sum_probs=97.2

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  118 (334)
                      ..|++|++++|++++ +|. |+.+++|+.|++++|+++ .+|..+.++++|++|++++|++++ +| .++.+++|++|++
T Consensus       441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            468899999999995 666 999999999999999999 789999999999999999999998 56 7899999999999


Q ss_pred             ecccCcccC-CCCCCCCCCCCccEEEecCCccccccc
Q 019924          119 RSNRFWGPI-GENTTIVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus       119 ~~N~l~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      ++|++++.. |..+  ..+++|+.|++++|.+++.++
T Consensus       516 s~N~l~~~~~p~~l--~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          516 CNNRLQQSAAIQPL--VSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CSSCCCSSSTTGGG--GGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCCCcHHH--hcCCCCCEEEecCCcCCCCcc
Confidence            999998776 6655  889999999999999987654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=3.9e-16  Score=125.91  Aligned_cols=134  Identities=15%  Similarity=0.192  Sum_probs=71.4

Q ss_pred             ccCCCCccEEeCCCCccccCCCccccCCC-CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCC
Q 019924           59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCH-HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP  137 (334)
Q Consensus        59 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  137 (334)
                      +..+.+|+.|++++|+++ .+|. +..+. +|++|++++|.+++.  ..+..+++|++|++++|++++..+..  +..++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL--DQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH--HHHCT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch--hhcCC
Confidence            444555666666666655 2333 33332 566666666666553  34555566666666666654332221  14556


Q ss_pred             CccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCccc
Q 019924          138 SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF  217 (334)
Q Consensus       138 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  217 (334)
                      +|+.|++++|.+........                                           +..+++|+.|++++|.+
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~-------------------------------------------l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDP-------------------------------------------LASLKSLTYLCILRNPV  125 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGG-------------------------------------------GGGCTTCCEEECCSSGG
T ss_pred             CCCEEECCCCcCCcchhhHh-------------------------------------------hhcCCCCCEEEecCCCC
Confidence            66666666666543211000                                           11145566677777766


Q ss_pred             ccCCchh----hhCcCCCCeeeccCCccC
Q 019924          218 QGGIPEV----VGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       218 ~~~~p~~----l~~l~~L~~L~Ls~N~l~  242 (334)
                      + .+|..    +..+++|+.||+++|.+.
T Consensus       126 ~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          126 T-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             G-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             C-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            6 44443    666777777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=2.3e-16  Score=127.24  Aligned_cols=135  Identities=19%  Similarity=0.129  Sum_probs=106.8

Q ss_pred             cCCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccc
Q 019924            4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l   83 (334)
                      .++++|+.|++++|.++.++.  +..+.       ++|++|++++|++++.  ..|..+++|++|++++|++++..+..+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~--~~~~~-------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN--LGATL-------DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC--GGGGT-------TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             CCcCCceEEEeeCCCCchhHH--hhhcC-------CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh
Confidence            357889999999999986532  11111       2458899999999865  678999999999999999996655556


Q ss_pred             cCCCCCCEEEccCCcCCcCCCh--hhhcCCCCCEEEeecccCcccCCCC--CCCCCCCCccEEEecCCcccc
Q 019924           84 VNCHHLEVLNVGNNQINDNFPN--WLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus        84 ~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                      ..+++|++|++++|+++. +|.  .+..+++|++|++++|+++. ++..  ..+..+++|+.||++.|....
T Consensus        85 ~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            899999999999999976 555  78899999999999999963 3432  013778999999999998764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.62  E-value=2.9e-18  Score=141.18  Aligned_cols=149  Identities=23%  Similarity=0.265  Sum_probs=103.4

Q ss_pred             CEEeCCCCcCccccCc------CccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCE
Q 019924           42 KVLDMRMNNFNGKIPR------KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV  115 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  115 (334)
                      +.++++.+.+++..|.      .|..+++|++|++++|++++ +| .+.++++|++|++++|.++. +|..+..+++|++
T Consensus        21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~   97 (198)
T 1ds9_A           21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEE   97 (198)
T ss_dssp             CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSE
T ss_pred             cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCE
Confidence            4455555555555444      77788888888888888874 56 77788888888888888875 5667777788888


Q ss_pred             EEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEec
Q 019924          116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKG  195 (334)
Q Consensus       116 L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (334)
                      |++++|++++. + .  +..+++|+.|++++|++++......                                      
T Consensus        98 L~L~~N~l~~l-~-~--~~~l~~L~~L~l~~N~i~~~~~~~~--------------------------------------  135 (198)
T 1ds9_A           98 LWISYNQIASL-S-G--IEKLVNLRVLYMSNNKITNWGEIDK--------------------------------------  135 (198)
T ss_dssp             EEEEEEECCCH-H-H--HHHHHHSSEEEESEEECCCHHHHHH--------------------------------------
T ss_pred             EECcCCcCCcC-C-c--cccCCCCCEEECCCCcCCchhHHHH--------------------------------------
Confidence            88888888653 3 2  3667788888888888765322111                                      


Q ss_pred             cchhhhhhhhheeEEEccCcccccCCch----------hhhCcCCCCeeeccCCccC
Q 019924          196 IDIKMERILTIFMTIDLSSNKFQGGIPE----------VVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       196 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~  242 (334)
                           +..+++|++|++++|.+++.+|.          .+..+++|+.||  +|+++
T Consensus       136 -----l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          136 -----LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             -----HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             -----HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence                 11256788888888888766554          267788888876  56554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=4.7e-15  Score=118.83  Aligned_cols=107  Identities=20%  Similarity=0.171  Sum_probs=84.3

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  121 (334)
                      +++++++|+++ .+|..+.  ++|++|++++|+|++..|..|.++++|++|++++|++++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            67888888887 4665553  67888888888888777778888888888888888888877777788888888888888


Q ss_pred             cCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      ++++..+..+  ..+++|+.|++++|.+....
T Consensus        89 ~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAF--DNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTT--TTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHh--cCCCCCCEEEeCCCCCCCCc
Confidence            8876555444  77888888888888887553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=7.3e-15  Score=117.72  Aligned_cols=107  Identities=23%  Similarity=0.198  Sum_probs=94.4

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~   87 (334)
                      ..+.+++++|.++.++....+           +|++|++++|+|++..|..|..+++|++|++++|+|++..+..|.+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~~-----------~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~   78 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIPT-----------TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT   78 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEEeCCCCcCccCccCCC-----------CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence            357899999999987654333           338899999999988899999999999999999999977777889999


Q ss_pred             CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc
Q 019924           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG  125 (334)
Q Consensus        88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  125 (334)
                      +|++|++++|++++..+..|..+++|++|++++|+++.
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            99999999999999777789999999999999999853

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=1.3e-14  Score=116.67  Aligned_cols=107  Identities=18%  Similarity=0.156  Sum_probs=86.9

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  121 (334)
                      +.+++++|+++ .+|..+.  ++|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67888888887 6666554  78889999999998777888888999999999999998866667788899999999999


Q ss_pred             cCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      ++++..+..+  ..+++|+.|++++|.+....
T Consensus        92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence            9875554434  78889999999999887543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.59  E-value=1.4e-14  Score=116.54  Aligned_cols=105  Identities=20%  Similarity=0.185  Sum_probs=92.2

Q ss_pred             ccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCC
Q 019924            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (334)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~   88 (334)
                      -+.+++++|.++.++..-.+           +|++|++++|+|++..|..|..+++|++|+|++|+|++..+..|.++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~~-----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIPT-----------DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CcEEEeCCCCCCccCCCcCC-----------CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            36899999999877653333           3388999999999888999999999999999999999766667899999


Q ss_pred             CCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc
Q 019924           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW  124 (334)
Q Consensus        89 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  124 (334)
                      |++|++++|++++..+..|..+++|++|++++|++.
T Consensus        83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            999999999999977777999999999999999985

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.59  E-value=3.4e-17  Score=156.84  Aligned_cols=115  Identities=17%  Similarity=0.261  Sum_probs=84.3

Q ss_pred             CCCcccEEEcCCCCCCCCCC----CCCCC-CCeEECCCC---------------CCCCEEeCCCCcCccc----cCcCcc
Q 019924            5 GIATLYYLDLSNNFLTNIEY----FPPTN-MTQLNFDSN---------------LTHKVLDMRMNNFNGK----IPRKFV   60 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~----~~~~~-L~~L~l~~n---------------~~L~~L~Ls~N~l~~~----~p~~~~   60 (334)
                      .+++|++|+|++|.+++...    ..++. |++|++++|               ++|++|+|++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            56888888888887765433    11333 888888877               6889999999887654    333455


Q ss_pred             CCCCccEEeCCCCcccc----CCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           61 KSCNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        61 ~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      .+++|++|++++|.+++    .++..+.++++|++|++++|.+.+ .|..+..+++|++|+++.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            67888888998888862    234445678889999998888876 567777778888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=4.6e-15  Score=140.92  Aligned_cols=125  Identities=23%  Similarity=0.234  Sum_probs=106.2

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l   86 (334)
                      ..|+.|++++|.+++++.  +..+.        +|++|+|++|+|+ .+|..|+.+++|+.|+|++|++++ +| .+.++
T Consensus       441 ~~L~~L~Ls~n~l~~lp~--~~~l~--------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l  507 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH--LEQLL--------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANL  507 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC--GGGGT--------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             cCceEEEecCCCCCCCcC--ccccc--------cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence            368899999999998643  44444        4499999999999 889999999999999999999995 67 89999


Q ss_pred             CCCCEEEccCCcCCcCC-ChhhhcCCCCCEEEeecccCcccCCCCCC-CCCCCCccEEEe
Q 019924           87 HHLEVLNVGNNQINDNF-PNWLEILPELQVLILRSNRFWGPIGENTT-IVPFPSLRIIDL  144 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~L  144 (334)
                      ++|++|++++|++++.. |..++.+++|+.|++++|++++..+.... +..+++|+.|++
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999999999976 99999999999999999999876654321 234789998864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.58  E-value=7.3e-17  Score=154.55  Aligned_cols=217  Identities=17%  Similarity=0.080  Sum_probs=109.2

Q ss_pred             CCCcccEEEcCCCCCCCCCC--CCCCCCCeEECCCC--------------CCCCEEeCCCCcCc-cccCcCccCCCCccE
Q 019924            5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFN-GKIPRKFVKSCNLTS   67 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n--------------~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~   67 (334)
                      .+++|+.|+++++.....+.  ..+++|++|++++|              ++|++|+++ +.+. +.++..+..+++|++
T Consensus       268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence            34555556655543322222  33445555555554              456666666 3333 222333344566666


Q ss_pred             EeCCC-----------CccccC-CCccccCCCCCCEEEccCCcCCcCCChhhhc-CCCCCEEEee----cccCcccCCCC
Q 019924           68 LNLNG-----------NRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEI-LPELQVLILR----SNRFWGPIGEN  130 (334)
Q Consensus        68 L~L~~-----------n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~L~----~N~l~~~~~~~  130 (334)
                      |++++           |.++.. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++    .|.+++...+.
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            66662           344322 1122334566666666666665544444443 6666666664    34443211000


Q ss_pred             ---CCCCCCCCccEEEecCCc--cccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccch----hhh
Q 019924          131 ---TTIVPFPSLRIIDLSHNE--FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI----KME  201 (334)
Q Consensus       131 ---~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~  201 (334)
                         ..+..+++|+.|++++|.  +++.........+++|+.++                      +..+.+..    ...
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~----------------------L~~n~l~~~~~~~~~  484 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML----------------------LGYVGESDEGLMEFS  484 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE----------------------ECSCCSSHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee----------------------ccCCCCCHHHHHHHH
Confidence               001345666666665432  33222211111112121111                      11111111    122


Q ss_pred             hhhhheeEEEccCcccccC-CchhhhCcCCCCeeeccCCccCCC
Q 019924          202 RILTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       202 ~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ..+++|+.|++++|.+++. ++..+..+++|+.|++++|++++.
T Consensus       485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            3468899999999998755 444556799999999999998864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=1.8e-14  Score=127.93  Aligned_cols=205  Identities=15%  Similarity=0.070  Sum_probs=128.1

Q ss_pred             CCcccEEEcCCCCCC--CCCCCCCCCCCeE----------ECCC--------CCCCCEEeCCCCcCccccCcCccCCCCc
Q 019924            6 IATLYYLDLSNNFLT--NIEYFPPTNMTQL----------NFDS--------NLTHKVLDMRMNNFNGKIPRKFVKSCNL   65 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~--~~~~~~~~~L~~L----------~l~~--------n~~L~~L~Ls~N~l~~~~p~~~~~l~~L   65 (334)
                      +++|+.|||++|++.  ......++.+..+          -+.+        +++|+.+++.+ .++...+.+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            688999999999998  2222222221111          1223        56778899988 8887777889999999


Q ss_pred             cEEeCCCCccccCCCccccCCCCCCEEEccCCcC----CcCC----------------------Ch--------------
Q 019924           66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI----NDNF----------------------PN--------------  105 (334)
Q Consensus        66 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l----~~~~----------------------~~--------------  105 (334)
                      +.+++++|.++...+.+|.++.++..+....+..    ....                      +.              
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            9999999988767777888877777776655221    0000                      00              


Q ss_pred             -------------hh-hcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhh-hcCCc
Q 019924          106 -------------WL-EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM-HGNNI  170 (334)
Q Consensus       106 -------------~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~~~~~  170 (334)
                                   .+ ..+++|+.+++++|+++......  |..+++|+.+++.+| +.. ++...|.++.+|+ .+...
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a--F~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT--FAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT--TTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEEC
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh--hhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEc
Confidence                         00 13789999999999886544443  488999999999998 553 3434455544433 22110


Q ss_pred             ccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeee
Q 019924          171 SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN  235 (334)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  235 (334)
                      .                    .+..++...+..+++|+.+++++|.++...+.+|.++++|+.+.
T Consensus       283 ~--------------------~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          283 A--------------------SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             T--------------------TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             c--------------------cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            0                    12233444455566666666666666655555666666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=1.3e-15  Score=145.75  Aligned_cols=64  Identities=19%  Similarity=0.188  Sum_probs=38.7

Q ss_pred             CCCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC----------------CCCCEEeCCCC-cCccccCcCcc
Q 019924            5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN----------------LTHKVLDMRMN-NFNGKIPRKFV   60 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n----------------~~L~~L~Ls~N-~l~~~~p~~~~   60 (334)
                      ++++|++|++++|.+++..+       ..+++|+.|++++|                ++|++|++++| .++ .+|..+.
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~  232 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQ  232 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHh
Confidence            46788888888887665432       35667777777766                57777777776 222 2333333


Q ss_pred             CCCCccEEe
Q 019924           61 KSCNLTSLN   69 (334)
Q Consensus        61 ~l~~L~~L~   69 (334)
                      .+++|+.|+
T Consensus       233 ~~~~L~~L~  241 (594)
T 2p1m_B          233 RAPQLEELG  241 (594)
T ss_dssp             HCTTCSEEE
T ss_pred             cCCcceEcc
Confidence            344444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=5.1e-16  Score=127.69  Aligned_cols=136  Identities=21%  Similarity=0.250  Sum_probs=109.7

Q ss_pred             ccCCCCccEEeCCCCccccCCCc------cccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCC
Q 019924           59 FVKSCNLTSLNLNGNRLEGPLPP------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT  132 (334)
Q Consensus        59 ~~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  132 (334)
                      +.....++.++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .++..+ 
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-
Confidence            44556777777888888777666      89999999999999999998 66 8889999999999999996 455433 


Q ss_pred             CCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEc
Q 019924          133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL  212 (334)
Q Consensus       133 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L  212 (334)
                       ..+++|+.|++++|++++. + . +.                                           .+++|+.|++
T Consensus        90 -~~~~~L~~L~L~~N~l~~l-~-~-~~-------------------------------------------~l~~L~~L~l  122 (198)
T 1ds9_A           90 -AVADTLEELWISYNQIASL-S-G-IE-------------------------------------------KLVNLRVLYM  122 (198)
T ss_dssp             -HHHHHCSEEEEEEEECCCH-H-H-HH-------------------------------------------HHHHSSEEEE
T ss_pred             -hcCCcCCEEECcCCcCCcC-C-c-cc-------------------------------------------cCCCCCEEEC
Confidence             5568999999999999863 2 1 22                                           2678899999


Q ss_pred             cCcccccCCc-hhhhCcCCCCeeeccCCccCCCC
Q 019924          213 SSNKFQGGIP-EVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       213 s~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      ++|++++..+ ..+..+++|+.|++++|++++.+
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            9999985332 57899999999999999997754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.46  E-value=1.7e-15  Score=136.61  Aligned_cols=165  Identities=13%  Similarity=0.025  Sum_probs=113.6

Q ss_pred             CCCCEEeCCCCcCccccCcCccC-----CCCccEEeCCCCccccCCCccc-cCCCCCCEEEccCCcCCcCCChhhh----
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVK-----SCNLTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLE----  108 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~~~l~----  108 (334)
                      +.|++|++++|.++......+..     .++|+.|+|++|.++......+ ..+++|++|++++|.++......+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            67899999999998543333332     3689999999999874322222 3356899999999999765444442    


Q ss_pred             -cCCCCCEEEeecccCcccCCCCC--CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCc
Q 019924          109 -ILPELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY  185 (334)
Q Consensus       109 -~l~~L~~L~L~~N~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~  185 (334)
                       ..++|++|+|++|.++......+  .+..+++|++|+|++|.+++.........                         
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-------------------------  206 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-------------------------  206 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-------------------------
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-------------------------
Confidence             46889999999999854221111  12467889999999999875322111111                         


Q ss_pred             eeeEEEEEeccchhhhhhhhheeEEEccCcccccC----CchhhhCcCCCCeeeccCCccCC
Q 019924          186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       186 l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                                     +...++|++|+|++|.|++.    ++..+...++|+.|+|++|+|++
T Consensus       207 ---------------L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          207 ---------------LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             ---------------GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             ---------------HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence                           11245789999999999854    34455667899999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.45  E-value=3.5e-15  Score=142.89  Aligned_cols=40  Identities=13%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             hhhheeEEEccCcccccCCch-hhhCcCCCCeeeccCCccC
Q 019924          203 ILTIFMTIDLSSNKFQGGIPE-VVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       203 ~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~  242 (334)
                      .+++|+.|+|++|.+++..+. ....+++|+.|++++|+++
T Consensus       479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            368899999999999755444 3456899999999999885

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.44  E-value=5.9e-13  Score=118.95  Aligned_cols=107  Identities=18%  Similarity=0.130  Sum_probs=74.5

Q ss_pred             EEeCCCC-cCccccCcCccCCCCccEEeCCC-CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           43 VLDMRMN-NFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        43 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      .++++++ +++ .+|. +..+++|+.|+|++ |++++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566766 676 4666 77777777777775 777766666777777777777777777777777777777777777777


Q ss_pred             ccCcccCCCCCCCCCCCCccEEEecCCccccccc
Q 019924          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (334)
Q Consensus       121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  154 (334)
                      |+|++..+..+  ..++ |+.|++++|.+...-.
T Consensus        90 N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTV--QGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHc--ccCC-ceEEEeeCCCccCCCc
Confidence            77765444433  3333 7788888877765433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.43  E-value=9e-16  Score=138.40  Aligned_cols=191  Identities=12%  Similarity=0.038  Sum_probs=121.6

Q ss_pred             CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCc-cCCCCccEEeCCCCccccCCCccc-
Q 019924            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKF-VKSCNLTSLNLNGNRLEGPLPPSL-   83 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l-   83 (334)
                      +++|+.|++++|.++......+...   -...+++|++|+|++|.++......+ ..+.+|+.|+|++|+++......+ 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~---L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAV---LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHH---HSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHH---HhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            3678999999999875432111000   00111345889999999875433333 345689999999999975433333 


Q ss_pred             ----cCCCCCCEEEccCCcCCcC----CChhhhcCCCCCEEEeecccCcccC----CCCCCCCCCCCccEEEecCCcccc
Q 019924           84 ----VNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPI----GENTTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus        84 ----~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~----~~~~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                          ...++|++|++++|.++..    ++..+..+++|++|+|++|.+++..    +..  +...++|+.|++++|.+++
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~--L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ--LDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH--GGGCSCCCEEECCSSCCCH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH--HhcCCCcCeEECCCCCCCH
Confidence                3468899999999998653    3344567899999999999986432    222  2556789999999999875


Q ss_pred             ccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCC-
Q 019924          152 VLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL-  230 (334)
Q Consensus       152 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-  230 (334)
                      .........+                                        ...++|++|||++|.|++.....+..+.. 
T Consensus       226 ~g~~~l~~~L----------------------------------------~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~  265 (372)
T 3un9_A          226 TAALALARAA----------------------------------------REHPSLELLHLYFNELSSEGRQVLRDLGGA  265 (372)
T ss_dssp             HHHHHHHHHH----------------------------------------HHCSSCCEEECTTSSCCHHHHHHHHHCC--
T ss_pred             HHHHHHHHHH----------------------------------------HhCCCCCEEeccCCCCCHHHHHHHHHHhcC
Confidence            4322211111                                        12467899999999998665555544321 


Q ss_pred             ----CCeee--ccCCcc
Q 019924          231 ----LKGLN--ISHNNL  241 (334)
Q Consensus       231 ----L~~L~--Ls~N~l  241 (334)
                          |+.+.  +..|.+
T Consensus       266 ~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          266 AEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             ----CEEECCCC----C
T ss_pred             CCccchhhHhhhcCCcc
Confidence                55555  555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.41  E-value=7.4e-13  Score=118.30  Aligned_cols=104  Identities=18%  Similarity=0.126  Sum_probs=91.5

Q ss_pred             cEEEcCCC-CCCCCCCCCCCCCCeEECCCCCCCCEEeCCC-CcCccccCcCccCCCCccEEeCCCCccccCCCccccCCC
Q 019924           10 YYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (334)
Q Consensus        10 ~~L~Ls~n-~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~   87 (334)
                      ..++++++ .+++++.  +..++.|        ++|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.+++
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L--------~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENL--------TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCC--------SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCe--------eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence            35799998 8988665  6666555        9999996 999988889999999999999999999998999999999


Q ss_pred             CCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc
Q 019924           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW  124 (334)
Q Consensus        88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  124 (334)
                      +|++|+|++|+|++..+..+..++ |+.|+|.+|.+.
T Consensus        81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            999999999999997777776666 999999999985

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.30  E-value=1.8e-11  Score=108.47  Aligned_cols=100  Identities=13%  Similarity=-0.013  Sum_probs=81.0

Q ss_pred             CCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCC-EEEeecccCcccCCCCCCCCCCCCcc
Q 019924           62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ-VLILRSNRFWGPIGENTTIVPFPSLR  140 (334)
Q Consensus        62 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~l~~L~  140 (334)
                      +++|+.+++++|+++...+.+|.++++|+.+++.+| ++...+.+|.++++|+ .+++.+ .++...+..  |.++++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a--F~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA--FMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTT--TTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhh--hhCCccCC
Confidence            678999999999998777788999999999999998 8887788999999999 999988 665444444  48899999


Q ss_pred             EEEecCCccccccchhhHHhHHhhhh
Q 019924          141 IIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus       141 ~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      .++++.|.++.... ..|.++.+|+.
T Consensus       301 ~l~l~~n~i~~I~~-~aF~~~~~L~~  325 (329)
T 3sb4_A          301 YVLATGDKITTLGD-ELFGNGVPSKL  325 (329)
T ss_dssp             EEEECSSCCCEECT-TTTCTTCCCCE
T ss_pred             EEEeCCCccCccch-hhhcCCcchhh
Confidence            99999999886544 44666666544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.28  E-value=6.2e-11  Score=107.74  Aligned_cols=77  Identities=9%  Similarity=0.074  Sum_probs=37.6

Q ss_pred             CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      |+.+.+.. .++...+..|.++.+|+.+++++|+++......|. +.+|+.+.+..+ ++.....+|..+++|+.+++..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            45555543 44434445555555555555555555533333333 345555555432 4444444555555555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.21  E-value=1.5e-10  Score=105.22  Aligned_cols=185  Identities=10%  Similarity=0.100  Sum_probs=133.8

Q ss_pred             cccEEEcCCCCCCCCCC---CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      +|+.+++.+ .++.+..   ..+.+|+.+++++|            ..|+.+.+..+ ++......|.++.+|+.+++..
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            466666665 4554444   34556666666654            56788888844 7767778999999999999987


Q ss_pred             CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcc----cCCCCCCCCCCCCccEEEecCCc
Q 019924           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG----PIGENTTIVPFPSLRIIDLSHNE  148 (334)
Q Consensus        73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~----~~~~~~~~~~l~~L~~L~Ls~N~  148 (334)
                      + ++..-..+|.+ .+|+.+.+ .+.++......|..+++|+.+++.+|.+..    .++. .+|..+++|+.+++.+ .
T Consensus       236 ~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~~-~  310 (401)
T 4fdw_A          236 N-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLARFEIPE-S  310 (401)
T ss_dssp             T-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCEECCCT-T
T ss_pred             C-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCeEEeCC-c
Confidence            5 55466677877 79999999 455777778899999999999999987641    1222 2458899999999984 3


Q ss_pred             cccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCc
Q 019924          149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL  228 (334)
Q Consensus       149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  228 (334)
                      ++.... .                                           .+..+++|+.++|..| ++...+.+|.++
T Consensus       311 i~~I~~-~-------------------------------------------aF~~c~~L~~l~lp~~-l~~I~~~aF~~~  345 (401)
T 4fdw_A          311 IRILGQ-G-------------------------------------------LLGGNRKVTQLTIPAN-VTQINFSAFNNT  345 (401)
T ss_dssp             CCEECT-T-------------------------------------------TTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred             eEEEhh-h-------------------------------------------hhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence            543222 2                                           2233677888888655 665667788888


Q ss_pred             CCCCeeeccCCccCCCC
Q 019924          229 NLLKGLNISHNNLTGLC  245 (334)
Q Consensus       229 ~~L~~L~Ls~N~l~~l~  245 (334)
                       +|+.+++++|.+..+.
T Consensus       346 -~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          346 -GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             -CCCEEEECCSSCCBCC
T ss_pred             -CCCEEEEcCCCCcccc
Confidence             8999999998876654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.03  E-value=3.7e-10  Score=101.03  Aligned_cols=145  Identities=20%  Similarity=0.233  Sum_probs=98.0

Q ss_pred             cCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhh--cCCCCCEEEeec--ccCccc----
Q 019924           55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE--ILPELQVLILRS--NRFWGP----  126 (334)
Q Consensus        55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~L~~L~L~~--N~l~~~----  126 (334)
                      ++..+..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+.  .+|+|++|+|+.  |...+.    
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            3455677899999999988411 2343 43 88999999999988654434444  789999999964  222111    


Q ss_pred             -CCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhh
Q 019924          127 -IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILT  205 (334)
Q Consensus       127 -~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  205 (334)
                       +...+....+++|+.|++++|.+.+......+       ...                                  .++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la-------~a~----------------------------------~~~  279 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL-------ESD----------------------------------ILP  279 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH-------HCS----------------------------------SGG
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH-------hCc----------------------------------cCC
Confidence             01112113579999999999988743221111       001                                  167


Q ss_pred             heeEEEccCcccccCC----chhhhCcCCCCeeeccCCccCC
Q 019924          206 IFMTIDLSSNKFQGGI----PEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       206 ~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                      +|+.|||+.|.+++..    +..+..+++|+.|++++|.+++
T Consensus       280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            8999999999998643    3444567999999999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=7.2e-10  Score=99.12  Aligned_cols=157  Identities=18%  Similarity=0.162  Sum_probs=99.8

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc--CCCCCCEEEccC--CcCCcC-----CChhh--
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV--NCHHLEVLNVGN--NQINDN-----FPNWL--  107 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~--N~l~~~-----~~~~l--  107 (334)
                      ++|+.|++++|.-. .++. +. +++|+.|++..|.++......+.  .+++|++|+|+.  |...+.     +...+  
T Consensus       172 P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            56778888776311 2233 33 78999999999988643333343  689999999863  222111     11122  


Q ss_pred             hcCCCCCEEEeecccCcccCCCCC-CCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCce
Q 019924          108 EILPELQVLILRSNRFWGPIGENT-TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY  186 (334)
Q Consensus       108 ~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l  186 (334)
                      ..+++|++|++++|.+.+..+..+ ....+++|++|+|+.|.+.+.........+                         
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-------------------------  303 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-------------------------  303 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-------------------------
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc-------------------------
Confidence            257999999999999864322111 013478999999999998764322211111                         


Q ss_pred             eeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhC-cCCCCeeeccCCc
Q 019924          187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK-LNLLKGLNISHNN  240 (334)
Q Consensus       187 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~  240 (334)
                                     ..+++|+.|+|++|.+++..-..+.. +  ...+++++++
T Consensus       304 ---------------~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          304 ---------------DKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             ---------------HHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ---------------ccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence                           12678999999999988655555544 2  3567888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.79  E-value=3.4e-10  Score=91.65  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=86.7

Q ss_pred             CCCCCCCCEEeCCCC-cCccc----cCcCccCCCCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcC---
Q 019924           35 FDSNLTHKVLDMRMN-NFNGK----IPRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDN---  102 (334)
Q Consensus        35 l~~n~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---  102 (334)
                      +..++.|++|+|++| .+...    +...+...++|++|+|++|+|...    +...+...++|++|+|++|.|+..   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344577899999999 88742    445566788999999999998743    345566678999999999999764   


Q ss_pred             -CChhhhcCCCCCEEEe--ecccCcccCCCCC--CCCCCCCccEEEecCCcccc
Q 019924          103 -FPNWLEILPELQVLIL--RSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus       103 -~~~~l~~l~~L~~L~L--~~N~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~  151 (334)
                       +...+...++|++|+|  ++|.+.......+  .+...++|+.|++++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence             2455667789999999  8899854321111  12456889999999998863

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=3.4e-09  Score=85.67  Aligned_cols=97  Identities=19%  Similarity=0.207  Sum_probs=74.4

Q ss_pred             ccCcCccCCCCccEEeCCCC-ccccC----CCccccCCCCCCEEEccCCcCCcCC----ChhhhcCCCCCEEEeecccCc
Q 019924           54 KIPRKFVKSCNLTSLNLNGN-RLEGP----LPPSLVNCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFW  124 (334)
Q Consensus        54 ~~p~~~~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~  124 (334)
                      .+...+...++|++|+|++| .+...    +...+...++|++|+|++|.++...    ...+...++|++|+|++|.|.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34456777899999999999 88742    4556777899999999999997632    344556789999999999986


Q ss_pred             cc----CCCCCCCCCCCCccEEEe--cCCccccc
Q 019924          125 GP----IGENTTIVPFPSLRIIDL--SHNEFTGV  152 (334)
Q Consensus       125 ~~----~~~~~~~~~l~~L~~L~L--s~N~l~~~  152 (334)
                      ..    +...  +...++|++|++  ++|.+...
T Consensus       107 ~~g~~~l~~~--L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          107 GSGILALVEA--LQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHHHHHHG--GGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHHHH--HHhCCCceEEEecCCCCCCCHH
Confidence            43    1222  366788999999  88998754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.60  E-value=3.1e-09  Score=90.52  Aligned_cols=66  Identities=24%  Similarity=0.305  Sum_probs=34.0

Q ss_pred             CCCCCCEEEccCCcCCc--CCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccc
Q 019924           85 NCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  152 (334)
                      ++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.. ....+..+ +|+.|++++|.+.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l-~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGL-KLEELWLDGNSLCDT  235 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTS-CCSEEECTTSTTGGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccC-CcceEEccCCcCccc
Confidence            45556666666666655  22344555666666666666654331 10011222 566666666666543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=5.9e-08  Score=82.58  Aligned_cols=98  Identities=23%  Similarity=0.335  Sum_probs=68.5

Q ss_pred             EeCCCCcCc---cccCcCccCCCCccEEeCCCCcccc--CCCccccCCCCCCEEEccCCcCCcCCChhhhcCC--CCCEE
Q 019924           44 LDMRMNNFN---GKIPRKFVKSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILP--ELQVL  116 (334)
Q Consensus        44 L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L  116 (334)
                      ++++.|...   ..++....++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            677777543   2222223457889999999999986  3456667889999999999999874  3344444  89999


Q ss_pred             EeecccCcccCCCC-----CCCCCCCCccEEE
Q 019924          117 ILRSNRFWGPIGEN-----TTIVPFPSLRIID  143 (334)
Q Consensus       117 ~L~~N~l~~~~~~~-----~~~~~l~~L~~L~  143 (334)
                      +|++|.+.+.++..     ..+..+++|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99999987655421     1235678888876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.35  E-value=4e-06  Score=75.85  Aligned_cols=227  Identities=13%  Similarity=0.099  Sum_probs=112.0

Q ss_pred             CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC------------CCCCEEeCCCC--------------------
Q 019924            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMN--------------------   49 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~N--------------------   49 (334)
                      ++++|+.+++..+ ++.+..   ..+.+|+.+++.++            ..|+.+.+..+                    
T Consensus        69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~  147 (394)
T 4fs7_A           69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP  147 (394)
T ss_dssp             TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred             CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence            5677778877644 555544   34556777766544            33333333211                    


Q ss_pred             -cCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCc----
Q 019924           50 -NFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW----  124 (334)
Q Consensus        50 -~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~----  124 (334)
                       .+......+|.++.+|+.+.+..+..+ .....|.++.+|+.+++..| ++......|..++.|+.+.+..+...    
T Consensus       148 ~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~  225 (394)
T 4fs7_A          148 EGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDF  225 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTT
T ss_pred             ccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehh
Confidence             111123356778888888888765433 55567888888888888665 44434445555555555444332110    


Q ss_pred             ----------------ccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceee
Q 019924          125 ----------------GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYES  188 (334)
Q Consensus       125 ----------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~  188 (334)
                                      ..+.. .++..+..++.+.+..+...  +....+..+..+.........+.... ......+..
T Consensus       226 ~~~~~~l~~i~ip~~~~~i~~-~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~~~~-F~~~~~L~~  301 (394)
T 4fs7_A          226 ALSKTGVKNIIIPDSFTELGK-SVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVPEKT-FYGCSSLTE  301 (394)
T ss_dssp             TTTTCCCCEEEECTTCCEECS-STTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEECTTT-TTTCTTCCE
T ss_pred             hcccCCCceEEECCCceeccc-ccccccccceeEEcCCCcce--eeccccccccccceeccCceeecccc-ccccccccc
Confidence                            01111 13467788888888776432  12222333333222111000000000 000001111


Q ss_pred             EEE--EEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCC
Q 019924          189 IIL--TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN  239 (334)
Q Consensus       189 ~~~--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  239 (334)
                      ...  .++.+....+..+.+|+.+++.++ ++.....+|.++.+|+.+++..|
T Consensus       302 i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          302 VKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             EEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            111  123344455555666666666543 44344556666666666666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.33  E-value=5.1e-06  Score=75.13  Aligned_cols=202  Identities=11%  Similarity=0.112  Sum_probs=121.0

Q ss_pred             CCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC------------CCCCEEeCCCCcCccccCcCccCCCCccEEe
Q 019924            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~   69 (334)
                      ++++|+.+++.++. ..+..   ..+.+|+.+.+..+            ..|+.+.+..+...  +...+....+|+.+.
T Consensus       160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~  236 (394)
T 4fs7_A          160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNII  236 (394)
T ss_dssp             TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEE
T ss_pred             ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEE
Confidence            56889999997653 33333   34455666655444            44555555444322  222333445667766


Q ss_pred             CCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcc
Q 019924           70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus        70 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      +..+ ++......+.++..++.+.+..+.. ......|..+..++.+....+.+    +. ..+..+.+|+.+.+..+ +
T Consensus       237 ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i----~~-~~F~~~~~L~~i~l~~~-i  308 (394)
T 4fs7_A          237 IPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV----PE-KTFYGCSSLTEVKLLDS-V  308 (394)
T ss_dssp             ECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE----CT-TTTTTCTTCCEEEECTT-C
T ss_pred             ECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee----cc-ccccccccccccccccc-c
Confidence            6543 2223445677788888888877643 33556677778888877766543    22 23466778888877654 3


Q ss_pred             ccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcC
Q 019924          150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN  229 (334)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  229 (334)
                      +. +....|.++.+|...... .                   .+..+....+..+.+|+.+++..+ ++.....+|.+++
T Consensus       309 ~~-I~~~aF~~c~~L~~i~lp-~-------------------~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          309 KF-IGEEAFESCTSLVSIDLP-Y-------------------LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             CE-ECTTTTTTCTTCCEECCC-T-------------------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             ce-echhhhcCCCCCCEEEeC-C-------------------cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            32 233335555544433220 0                   122344556666888999999876 6656667899999


Q ss_pred             CCCeeeccCC
Q 019924          230 LLKGLNISHN  239 (334)
Q Consensus       230 ~L~~L~Ls~N  239 (334)
                      +|+.+++..+
T Consensus       367 ~L~~i~lp~~  376 (394)
T 4fs7_A          367 NLKKVELPKR  376 (394)
T ss_dssp             TCCEEEEEGG
T ss_pred             CCCEEEECCC
Confidence            9999998754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=2.4e-07  Score=73.41  Aligned_cols=92  Identities=12%  Similarity=0.059  Sum_probs=63.0

Q ss_pred             cCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCc-CCcCCChhhhcC----CCCCEEEeeccc-CcccCC
Q 019924           55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEIL----PELQVLILRSNR-FWGPIG  128 (334)
Q Consensus        55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~L~~N~-l~~~~~  128 (334)
                      +|.....-.+|+.||+++|.|+..--..+.++++|++|+|++|. +++..-..+..+    ++|++|++++|. ++..-.
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            34433333468888888888875544556788889999998884 665444445554    368999998875 654333


Q ss_pred             CCCCCCCCCCccEEEecCCc
Q 019924          129 ENTTIVPFPSLRIIDLSHNE  148 (334)
Q Consensus       129 ~~~~~~~l~~L~~L~Ls~N~  148 (334)
                      ..+  ..+++|+.|+++++.
T Consensus       133 ~~L--~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          133 IAL--HHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHG--GGCTTCCEEEEESCT
T ss_pred             HHH--hcCCCCCEEECCCCC
Confidence            323  568899999998885

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=3.8e-07  Score=72.26  Aligned_cols=83  Identities=11%  Similarity=-0.001  Sum_probs=63.4

Q ss_pred             CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCc-cccCCCccccCC----CCCCEEEccCCc-CCcCCChhhhcCCCC
Q 019924           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLVNC----HHLEVLNVGNNQ-INDNFPNWLEILPEL  113 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~L  113 (334)
                      .|+.||++++.++...-..+.++++|++|+|++|. ++..--..+..+    ++|++|++++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45889999998886666677889999999999985 664322334443    479999999974 776555667789999


Q ss_pred             CEEEeeccc
Q 019924          114 QVLILRSNR  122 (334)
Q Consensus       114 ~~L~L~~N~  122 (334)
                      ++|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999885

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.96  E-value=0.00031  Score=63.34  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=66.1

Q ss_pred             ChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCC
Q 019924          104 PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS  183 (334)
Q Consensus       104 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~  183 (334)
                      ...|..+..|+.+.+..+..  .+.. .++..+++|+.+.+.. .++. ++...|.++.+|+......            
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~--~I~~-~aF~~c~~L~~i~l~~-~i~~-I~~~aF~~c~~L~~i~lp~------------  320 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV--SIGT-GAFMNCPALQDIEFSS-RITE-LPESVFAGCISLKSIDIPE------------  320 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC--EECT-TTTTTCTTCCEEECCT-TCCE-ECTTTTTTCTTCCEEECCT------------
T ss_pred             cceeeecccccEEecccccc--eecC-cccccccccccccCCC-cccc-cCceeecCCCCcCEEEeCC------------
Confidence            34566777777777765532  1222 2346677777777753 3332 2333355444443322200            


Q ss_pred             CceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCcc
Q 019924          184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL  241 (334)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  241 (334)
                              .++.+....+..+.+|+.+.+..+ ++.....+|.++++|+.+++.+|..
T Consensus       321 --------~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          321 --------GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             --------TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             --------cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence                    123344556666888888888654 6645567888899999999888753

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.91  E-value=7e-07  Score=72.04  Aligned_cols=114  Identities=12%  Similarity=0.105  Sum_probs=80.3

Q ss_pred             CCCCCCCCEEeCCCC-cCcc----ccCcCccCCCCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcCCC-
Q 019924           35 FDSNLTHKVLDMRMN-NFNG----KIPRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFP-  104 (334)
Q Consensus        35 l~~n~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~-  104 (334)
                      +.+|+.|++|+|++| +|..    .+.+.+..-+.|+.|+|++|+|...    +.+.+..-+.|++|+|++|.|+.... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345578899999985 8763    2445566778999999999999743    44455667899999999999976433 


Q ss_pred             ---hhhhcCCCCCEEEeecc---cCccc----CCCCCCCCCCCCccEEEecCCccc
Q 019924          105 ---NWLEILPELQVLILRSN---RFWGP----IGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus       105 ---~~l~~l~~L~~L~L~~N---~l~~~----~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                         ..+..-+.|++|+|++|   .+...    +..  .+...+.|+.|+++.|.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~--aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH--HHHhCCCcCeEeccCCCcc
Confidence               33445677999999865   33211    111  1245678999999888754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.90  E-value=0.00031  Score=63.33  Aligned_cols=135  Identities=13%  Similarity=0.130  Sum_probs=80.6

Q ss_pred             ccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCC
Q 019924           54 KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI  133 (334)
Q Consensus        54 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  133 (334)
                      .....|.++..|+.+.+..+..+ ....+|.++++|+.+.+. +.++......|.++.+|+.+++..+ ++. +.. .+|
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~-~aF  330 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ-ILD-DAF  330 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE-ECT-TTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE-ehH-hHh
Confidence            44556777788888887665443 455677778888888875 4455555667777888888887654 322 222 234


Q ss_pred             CCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEcc
Q 019924          134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLS  213 (334)
Q Consensus       134 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls  213 (334)
                      .++.+|+.+.+..+ ++..                                            ....+..+++|+.+++.
T Consensus       331 ~~C~~L~~i~ip~s-v~~I--------------------------------------------~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          331 AGCEQLERIAIPSS-VTKI--------------------------------------------PESAFSNCTALNNIEYS  365 (394)
T ss_dssp             TTCTTCCEEEECTT-CCBC--------------------------------------------CGGGGTTCTTCCEEEES
T ss_pred             hCCCCCCEEEECcc-cCEE--------------------------------------------hHhHhhCCCCCCEEEEC
Confidence            77778888877543 3322                                            22334447788899998


Q ss_pred             CcccccCCchhhhCcCCCCeeeccCCcc
Q 019924          214 SNKFQGGIPEVVGKLNLLKGLNISHNNL  241 (334)
Q Consensus       214 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  241 (334)
                      ++....   ..+.....|+.+.+..|.+
T Consensus       366 ~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          366 GSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             SCHHHH---HTCBCCCCC----------
T ss_pred             Cceeeh---hhhhccCCCCEEEeCCCCE
Confidence            876541   4566778888888876653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.71  E-value=0.00072  Score=60.45  Aligned_cols=138  Identities=9%  Similarity=0.051  Sum_probs=82.5

Q ss_pred             CcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCC
Q 019924           56 PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVP  135 (334)
Q Consensus        56 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  135 (334)
                      ...+..+.+|+.+.+..+ ++......+.++..|+.+.+..+ ++......|..+.+|+.+.+..+ +. .++. .++..
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~-~aF~~  284 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPY-LLCSG  284 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECT-TTTTT
T ss_pred             ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccc-ccccc
Confidence            344555666666666544 33244456666777777777654 44445556667777777776543 32 1222 13366


Q ss_pred             CCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCc
Q 019924          136 FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSN  215 (334)
Q Consensus       136 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  215 (334)
                      +++|+.+.+.++.++...                                            ...+..+.+|+.++|..+
T Consensus       285 c~~L~~i~l~~~~i~~I~--------------------------------------------~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLE--------------------------------------------PRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CTTCCEEEECCTTCCEEC--------------------------------------------TTTTTTCTTCCEEECCTT
T ss_pred             ccccccccccccccceeh--------------------------------------------hhhhcCCCCCCEEEcCcc
Confidence            677777777666554322                                            222334677888888654


Q ss_pred             ccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          216 KFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       216 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                       ++.....+|.++++|+.+.+..+ ++.+
T Consensus       321 -l~~I~~~aF~~C~~L~~i~ip~~-v~~I  347 (379)
T 4h09_A          321 -LKTIQVYAFKNCKALSTISYPKS-ITLI  347 (379)
T ss_dssp             -CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred             -ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence             55455667888888998888654 5443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.66  E-value=2.1e-05  Score=63.38  Aligned_cols=113  Identities=12%  Similarity=0.062  Sum_probs=74.4

Q ss_pred             CcccEEEcCCC-CCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccC----cCccCCCCccEEeCCCCccccC---
Q 019924            7 ATLYYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP----RKFVKSCNLTSLNLNGNRLEGP---   78 (334)
Q Consensus         7 ~~L~~L~Ls~n-~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~---   78 (334)
                      +.|+.|+|++| .|.......   |-. -|..|..|+.|+|++|+|.....    ..+..-+.|++|+|+.|.|+..   
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~---la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRS---LIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHH---HHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHH---HHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            45677777764 554321100   000 11234677999999999985433    3444568899999999999743   


Q ss_pred             -CCccccCCCCCCEEEccCC---cCCcC----CChhhhcCCCCCEEEeecccC
Q 019924           79 -LPPSLVNCHHLEVLNVGNN---QINDN----FPNWLEILPELQVLILRSNRF  123 (334)
Q Consensus        79 -~p~~l~~l~~L~~L~Ls~N---~l~~~----~~~~l~~l~~L~~L~L~~N~l  123 (334)
                       +.+++..-+.|++|+|++|   .+...    +...+..-+.|+.|+++.|.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             4456677788999999865   44432    234556778999999987765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.56  E-value=0.0004  Score=62.12  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=47.6

Q ss_pred             CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  119 (334)
                      .|+.+.+..+ ++......|.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++......|.++.+|+.+.+.
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            3444554433 33333445555555555555432 332333445555555555555555554444555555555555554


Q ss_pred             cccCcccCCCCCCCCCCCCccEEEec
Q 019924          120 SNRFWGPIGENTTIVPFPSLRIIDLS  145 (334)
Q Consensus       120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls  145 (334)
                      .+ ++. +.. .+|.++.+|+.+.+.
T Consensus       319 ~~-l~~-I~~-~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          319 TA-LKT-IQV-YAFKNCKALSTISYP  341 (379)
T ss_dssp             TT-CCE-ECT-TTTTTCTTCCCCCCC
T ss_pred             cc-ccE-EHH-HHhhCCCCCCEEEEC
Confidence            33 221 111 123455555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.35  E-value=0.00049  Score=51.64  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=16.4

Q ss_pred             CCCEEEccCCcCCcCCChhhhcCCCCCEEEeeccc
Q 019924           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR  122 (334)
Q Consensus        88 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~  122 (334)
                      +|++|+|++|+|+...+..|..+++|++|+|++|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            34455555555544444444444444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.16  E-value=0.001  Score=49.85  Aligned_cols=57  Identities=25%  Similarity=0.352  Sum_probs=42.8

Q ss_pred             CEEeCCCCcCc-cccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCC
Q 019924           42 KVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN  100 (334)
Q Consensus        42 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  100 (334)
                      ..++.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46778888776 34554433  36888899999888666777888888999999988774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 2e-12
 Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 15/240 (6%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
                LDL NN +T I+     N+  L          L +  N  +   P  F     L 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKISKISPGAFAPLVKLE 82

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L L+ N+L+  LP  +     L+ L V  N+I     +    L ++ V+ L +N     
Sbjct: 83  RLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS-VEVDYMTPLNSSN 184
             EN        L  I ++    T  +  G   +   + + GN I+ V+   +  LN+  
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL 244
                  +I  +D            + L++NK    +P  +     ++ + + +NN++ +
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 2/182 (1%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           +   L+L  N++         N  +L  L + NN+I+   P     L +L+ L L  N+ 
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
                          LR+ +    +    +  G        +  N +             
Sbjct: 92  KELP--EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                I +    I    + +      + L  NK        +  LN L  L +S N+++ 
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 244 LC 245
           + 
Sbjct: 210 VD 211

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.8 bits (143), Expect = 8e-11
 Identities = 54/260 (20%), Positives = 86/260 (33%), Gaps = 27/260 (10%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
           LDLS   L      P +    L     L    +   +NN  G IP    K   L  L + 
Sbjct: 55  LDLSGLNLPKPYPIPSS----LANLPYLNFLYI-GGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
              + G +P  L     L  L+   N ++   P  +  LP L  +    NR  G I ++ 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191
                    +    +     +  T    N   +    N+      +   +  N  +  + 
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 192 -TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG------- 243
                 D+    +      +DL +N+  G +P+ + +L  L  LN+S NNL G       
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 244 --------------LCGFPL 249
                         LCG PL
Sbjct: 290 LQRFDVSAYANNKCLCGSPL 309

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 3e-09
 Identities = 38/261 (14%), Positives = 78/261 (29%), Gaps = 33/261 (12%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI----------- 55
           A    + L  N ++++          L      ++ +  +    F G             
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 56  ------PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI 109
                 P  F     L +L+L+   L+   P        L+ L + +N +     +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169
           L  L  L L  NR               SL  + L  N    V    +   F+ +     
Sbjct: 152 LGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMT 205

Query: 170 ISVEVDYMTPLNSSNYYESIILTIKGI-------DIKMERILTIFMTIDLSSNKFQGGIP 222
           + +  + ++ L +        L    +       D +   +         SS++    +P
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

Query: 223 EVVGKLNLLKGLNISHNNLTG 243
           + +   +L     ++ N+L G
Sbjct: 266 QRLAGRDL---KRLAANDLQG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 20/150 (13%)

Query: 9   LYYLDLSNNFLTNIEYFP-PTNMTQLNFDS----------NLTHKVLDMRMNNFNGKIPR 57
           L  LDL+NN ++N+      T +T+L   +           LT         N   +   
Sbjct: 243 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDIS 301

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117
                 NLT L L  N +    P  + +   L+ L   NN+++D   + L  L  +  L 
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147
              N+          +     +  + L+  
Sbjct: 358 AGHNQISDLTP----LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 5e-09
 Identities = 44/244 (18%), Positives = 80/244 (32%), Gaps = 13/244 (5%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           +  +   +   +  +      +T L   +NLT        +N    I     K  NL SL
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA-KLTNLESL 202

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
               N++    P       +L+ L++  NQ+ D     L  L  L  L L +N+      
Sbjct: 203 IATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYES 188
               +     L  + L  N+ + +     L     +    N   ++  ++ L +  Y   
Sbjct: 259 ----LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 189 IILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFP 248
               I  I       LT    +  ++NK        +  L  +  L+  HN ++ L    
Sbjct: 315 YFNNISDISPVSS--LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 370

Query: 249 LLES 252
            L  
Sbjct: 371 NLTR 374

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 5e-08
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 21/243 (8%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHK-VLDMRMNNFNGKIPRKF 59
               G        L+N             ++ ++  + LT+   L    N  +   P   
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
           +   NL  L+LNGN+L+     +L +  +L  L++ NNQI++  P  L  L +L  L L 
Sbjct: 218 L--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 271

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS--VEVDY 176
           +N+          +    +L  ++L+ N+   +     L N   + ++ NNIS    V  
Sbjct: 272 ANQISNISP----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327

Query: 177 MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236
           +T L    +  + +  +  +       LT    +    N+     P  +  L  +  L +
Sbjct: 328 LTKLQRLFFANNKVSDVSSL-----ANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

Query: 237 SHN 239
           +  
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 46/293 (15%), Positives = 79/293 (26%), Gaps = 57/293 (19%)

Query: 9   LYYLDLSNNFLTNIE---------------------------------YFPPTNMTQLNF 35
           L  ++ SNN LT+I                                        +T ++ 
Sbjct: 68  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 36  DSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVG 95
             NLT+       +N    I      +        N      PL             N  
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187

Query: 96  NNQINDNFPNWLEIL----------------PELQVLILRSNRFWGPIGENTTIVPFPSL 139
           ++         LE L                  L  L L  N+         T+    +L
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI----GTLASLTNL 243

Query: 140 RIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199
             +DL++N+ + +     L     +  G N    +  +  L +    E      +  DI 
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE--NQLEDIS 301

Query: 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLES 252
               L     + L  N      P  V  L  L+ L  ++N ++ +     L +
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTN 352

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 15/122 (12%)

Query: 11  YLDLSNNFLTNIEYFPP-TNMTQLNFDSNL----------THKVLDMRMNNFNGKIPRKF 59
            L L++  LT + +      +T L+   N              +  ++ ++   +     
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 60  VKSCNLTSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQIN--DNFPNWL-EILPELQV 115
                L  L L  NRL+       LV+C  L +LN+  N +   +     L E+LP +  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121

Query: 116 LI 117
           ++
Sbjct: 122 IL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 140 RIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198
           R++ L+H + T +     L     + +  N +      +  L      ++    ++ +D 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 199 KMERILTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNISHNNLTGLCGFP 248
                      + L +N+ Q     + +     L  LN+  N+L    G  
Sbjct: 61  VANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 42  KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
           +VL +   +    +     +   +T L+L+ NRL    PP+L     LEVL   +N + +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN 57

Query: 102 NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
                       Q L+L +NR          +V  P L +++L  N     
Sbjct: 58  VDGVANLPRL--QELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 4/183 (2%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           + T L+L+ N L      +L+    L  LN+   ++     +    LP L  L L  N+ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL 89

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS-VEVDYMTPLNS 182
                   T+     L +            L G  +  +  + GN +  +    +TP   
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
                     +  +   +   L    T+ L  N     IP+     +LL    +  N   
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

Query: 243 GLC 245
             C
Sbjct: 209 CNC 211

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 6/113 (5%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV 60
                +       L       ++      +           + L +  NN          
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 61  KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN-----FPNWLE 108
              NL +L L  N L   +P      H L    +  N    N     F  WL+
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 54  KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL 113
           ++     K  + +   L+   L     P LV  +   VLN  ++          E +PEL
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPEL 67

Query: 114 QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT---GVLLTGYLDNFKAMMHGNNI 170
             L L +NR +     ++ +   P+L+I++LS NE      +     L   +  + GN++
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 171 SVEVDYMTPLNSSNYYESII 190
           S      T  + S Y  +I 
Sbjct: 128 S-----DTFRDQSTYISAIR 142

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 9e-06
 Identities = 27/189 (14%), Positives = 59/189 (31%), Gaps = 12/189 (6%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
                NL    +   +  +    + ++ +   N+ I       ++ LP +  L L  N+ 
Sbjct: 25  ETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
                      P  +L+ +     +   V     L + K +   +     +  +  L   
Sbjct: 81  TDIK-------PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
              ES+ L    I           +      +     I  +   L  L+ L +S N+++ 
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISD 192

Query: 244 LCGFPLLES 252
           L     L++
Sbjct: 193 LRALAGLKN 201

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 42  KVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGPLPPSLV-----NCHHLEVL 92
           +VL +   + +      +    + + +L  L+L+ N L       LV         LE L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 93  NVGNNQINDNFPNWLEIL----PELQVL 116
            + +   ++   + L+ L    P L+V+
Sbjct: 432 VLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 6e-05
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 42  KVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGN 96
           + LD++    +     + +        + L+   L       +  +L     L  LN+ +
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 97  NQINDNFPNWL-----EILPELQVLILRSNRFW 124
           N++ D   + +         ++Q L L++    
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 63  CNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPE----L 113
             L  L L    +       L  +L+  H L  L++ NN + D     L E + +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 114 QVLILRSNRFWGPIGENTTIVP--FPSLRII 142
           + L+L    +   + +    +    PSLR+I
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 23/91 (25%)

Query: 62  SCNLTSLNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
           S ++ SL++    L +      L      +V+ + +  + +      + +       LR 
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR---CKDISSA----LRV 53

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151
           N               P+L  ++L  NE   
Sbjct: 54  N---------------PALAELNLRSNELGD 69

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 15/227 (6%)

Query: 27  PTNMTQLNFDSNLTHKV-LDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85
           PT +  +  D  L + + +    +N    + +  +    +T+L+  G  +       +  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTI--EGVQY 61

Query: 86  CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS 145
            ++L  L + +NQI D  P           L     +    I    +I            
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 146 HNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILT 205
                G+     L      +   +    +  +  L+  N   S +       +     LT
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-----TPLANLSKLT 176

Query: 206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGFPLLES 252
                    NK     P  +  L  L  +++ +N ++ +       +
Sbjct: 177 TLKA---DDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSN 218

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 15/109 (13%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117
           ++  +     L+L G ++   +          + ++  +N+I     +   +L  L+ L+
Sbjct: 13  QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166
           + +NR           +P      + L++N    +     L + K++ +
Sbjct: 70  VNNNRICRIGEGLDQALPDL--TELILTNNSLVELGDLDPLASLKSLTY 116

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 41/115 (35%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV 60
                  +L  L++SNN L  +   PP                                 
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPALPP--------------------------------- 304

Query: 61  KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
               L  L  + N L   +P       +L+ L+V  N + + FP+  E + +L++
Sbjct: 305 ---RLERLIASFNHLAE-VPELP---QNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 12/153 (7%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV 60
                +  L  +   NN L  +   PP+       D+ LT      +   F       F 
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 61  KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
               L       N     +         LE LNV NN++ +  P      P L+ LI   
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF 313

Query: 121 NRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGV 152
           N           +   P +L+ + + +N     
Sbjct: 314 NHL-------AEVPELPQNLKQLHVEYNPLREF 339

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 44/177 (24%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM----------------------- 48
           +D +   L  I    P + T+L  + N   ++    +                       
Sbjct: 13  VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 49  ---------------NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLN 93
                          N       + F+    L +LNL  N++   +P S  + + L  LN
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 94  VGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150
           + +N  N N          L+   L                    ++I DL H+EF 
Sbjct: 133 LASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPS-----KVRDVQIKDLPHSEFK 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.27
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.24
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.61
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.36

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=6.9e-26  Score=198.35  Aligned_cols=223  Identities=23%  Similarity=0.295  Sum_probs=169.0

Q ss_pred             cccEEEcCCCCCCCC--CCCCCCCCCeEECCCCCCCCEEeCCC-CcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            8 TLYYLDLSNNFLTNI--EYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~--~~~~~~~L~~L~l~~n~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      +++.|||++|.+++.  .|..+.+|+.|        ++|+|++ |+++|.+|..|+++++|++|++++|++++..+..+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L--------~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~  122 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYL--------NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTC--------SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccc--------cccccccccccccccccccccccccchhhhcccccccccccccc
Confidence            689999999999874  34455555555        8999986 899999999999999999999999999988899999


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCc-cEEEecCCccccccchhhHHhHHh
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL-RIIDLSHNEFTGVLLTGYLDNFKA  163 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~l~~  163 (334)
                      .+.+|+++++++|.+.+.+|..+..++.|+++++++|.+.+.+|..+  ..+..+ +.+++++|++++..+.. +..+..
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~  199 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-FANLNL  199 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-GGGCCC
T ss_pred             chhhhcccccccccccccCchhhccCcccceeecccccccccccccc--cccccccccccccccccccccccc-cccccc
Confidence            99999999999999999899999999999999999999988888765  566665 88999999999877654 333322


Q ss_pred             hhhcCCcccccc-----cccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccC
Q 019924          164 MMHGNNISVEVD-----YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH  238 (334)
Q Consensus       164 L~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  238 (334)
                      .. ++.......     ..........+......+.+.. .....+++|+.|+|++|+++|.+|+.++++++|++|+|++
T Consensus       200 ~~-l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         200 AF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             SE-EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             cc-cccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence            21 111111110     1111122222222222232222 2334478999999999999999999999999999999999


Q ss_pred             CccCC
Q 019924          239 NNLTG  243 (334)
Q Consensus       239 N~l~~  243 (334)
                      |+|+|
T Consensus       278 N~l~g  282 (313)
T d1ogqa_         278 NNLCG  282 (313)
T ss_dssp             SEEEE
T ss_pred             Ccccc
Confidence            99885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.6e-24  Score=180.28  Aligned_cols=205  Identities=20%  Similarity=0.146  Sum_probs=126.8

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      +...+..+|.+++.++.+|+.-.+++           ++|+|++|+|++..+..|.++++|++|+|++|+|+. +| .++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp~~l-----------~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~   74 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLPKDT-----------TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDG   74 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCCTTC-----------CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCS
T ss_pred             ccCCCeEEEccCCCCCeeCcCcCcCC-----------CEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccc
Confidence            44667778999999998765433445           555666666665444556666666666666666652 22 244


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  164 (334)
                      .+++|++|++++|+++. .+..+..+++|++|++++|.+.+..+..+  ..+.+++.|++++|.+....+ ..+..+..+
T Consensus        75 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~l~~L~l~~n~l~~l~~-~~~~~l~~l  150 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELKTLPP-GLLTPTPKL  150 (266)
T ss_dssp             CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccceeecccc--ccccccccccccccccceecc-ccccccccc
Confidence            56666666666666655 34455566666666666666544333333  455666666666666554332 223333333


Q ss_pred             hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ..++...+                   .+..++...+..+++|++|||++|+|+ .+|+.+..+++|+.|+|++|++.+-
T Consensus       151 ~~l~l~~N-------------------~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         151 EKLSLANN-------------------NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CEEECTTS-------------------CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             hhcccccc-------------------cccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            22222111                   122233344455789999999999999 8898899999999999999999877


Q ss_pred             CC
Q 019924          245 CG  246 (334)
Q Consensus       245 ~~  246 (334)
                      |.
T Consensus       211 C~  212 (266)
T d1p9ag_         211 CE  212 (266)
T ss_dssp             GG
T ss_pred             cc
Confidence            74

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.2e-24  Score=182.81  Aligned_cols=210  Identities=17%  Similarity=0.135  Sum_probs=124.7

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCC-CCccccCCCccccCC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN-GNRLEGPLPPSLVNC   86 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~l~~l   86 (334)
                      ++++|+|++|+|+++++..+.+++.|        ++|++++|++....+..+..+..++.+... .+.++...+..|.++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L--------~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  104 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNL--------TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTC--------CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccc--------cccccccccccccccccccccccccccccccccccccccchhhccc
Confidence            56778888888877766444433322        555666555555555555555555555443 344444445555555


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      ++|++|++++|.+....+..+...++|+.+++++|++++..+..+  ..+++|+.|++++|++++..+ ..+.++++|..
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f--~~~~~L~~L~l~~N~l~~l~~-~~f~~l~~L~~  181 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDR  181 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECT-TTTTTCTTCCE
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh--ccccchhhcccccCcccccch-hhhccccccch
Confidence            556666666555555444455555555666666655544333333  455555566666555554333 22333333322


Q ss_pred             cCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~  246 (334)
                      +....                   +.+..+....+..+++|++||+++|++++..|+.|..+++|++|++++|++.+.|+
T Consensus       182 l~l~~-------------------N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         182 LLLHQ-------------------NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             EECCS-------------------SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhhhh-------------------ccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            22211                   11122233334457889999999999998888999999999999999999998776


Q ss_pred             C
Q 019924          247 F  247 (334)
Q Consensus       247 ~  247 (334)
                      .
T Consensus       243 ~  243 (284)
T d1ozna_         243 A  243 (284)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=1.3e-23  Score=183.66  Aligned_cols=235  Identities=23%  Similarity=0.295  Sum_probs=136.7

Q ss_pred             cCCCcccEEEcCC-CCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcc
Q 019924            4 LGIATLYYLDLSN-NFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPS   82 (334)
Q Consensus         4 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~   82 (334)
                      .++++|++|+|++ |.+++..|..+.+|+.|        ++|+|++|++.+..+..+..+.+|+.+++++|.+.+.+|..
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L--------~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~  144 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQL--------HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTC--------SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             hcCcccccccccccccccccccccccccccc--------chhhhccccccccccccccchhhhcccccccccccccCchh
Confidence            3689999999997 88987776444444433        55566666666555555555666666666666655555556


Q ss_pred             ccCCCCCCEEEccCCcCCcCCChhhhcCCCC-CEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhH
Q 019924           83 LVNCHHLEVLNVGNNQINDNFPNWLEILPEL-QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNF  161 (334)
Q Consensus        83 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  161 (334)
                      +.++++++++++++|.+.+.+|..+..+..+ +.++++.|++++..+..+  ..+. ...++++++...+.++.. ...+
T Consensus       145 l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~--~~l~-~~~l~l~~~~~~~~~~~~-~~~~  220 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSRNMLEGDASVL-FGSD  220 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCSSEEEECCGGG-CCTT
T ss_pred             hccCcccceeeccccccccccccccccccccccccccccccccccccccc--cccc-cccccccccccccccccc-cccc
Confidence            6666666666666666655555555555543 555556665555444433  2232 224555555554444322 2233


Q ss_pred             HhhhhcCCccccc----ccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeecc
Q 019924          162 KAMMHGNNISVEV----DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS  237 (334)
Q Consensus       162 ~~L~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  237 (334)
                      ..+..++......    ..+........+....+.+.+..+..+..+++|++|||++|+|+|.+|+ ++++++|+.++++
T Consensus       221 ~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~  299 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA  299 (313)
T ss_dssp             SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTC
T ss_pred             ccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhC
Confidence            3332222211111    1111111222222222333433344566689999999999999999985 6889999999999


Q ss_pred             CCccCCCCCCCccCCCC
Q 019924          238 HNNLTGLCGFPLLESCN  254 (334)
Q Consensus       238 ~N~l~~l~~~~~~~~c~  254 (334)
                      +|+.  +||.|+ ..|+
T Consensus       300 ~N~~--l~g~pl-p~c~  313 (313)
T d1ogqa_         300 NNKC--LCGSPL-PACT  313 (313)
T ss_dssp             SSSE--EESTTS-SCCC
T ss_pred             CCcc--ccCCCC-CCCC
Confidence            9984  788775 3563

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-20  Score=162.28  Aligned_cols=203  Identities=19%  Similarity=0.105  Sum_probs=161.4

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCC
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L   89 (334)
                      ..++.+++.++.++..-+++           +++|+|++|+|+...+..|.++++|++|++++|+++...+..+.++..+
T Consensus        14 ~~v~c~~~~L~~iP~~ip~~-----------~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~   82 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIPAA-----------SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL   82 (284)
T ss_dssp             CEEECCSSCCSSCCTTCCTT-----------CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             eEEEcCCCCCCccCCCCCCC-----------CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccc
Confidence            35678888888765433322           3788999999997777889999999999999999998888888999999


Q ss_pred             CEEEcc-CCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcC
Q 019924           90 EVLNVG-NNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN  168 (334)
Q Consensus        90 ~~L~Ls-~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~  168 (334)
                      +.++.. .|.++...+..|..+++|++|++++|.+....+..+  ...++|+.+++++|++++..+ ..+..+..+..++
T Consensus        83 ~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~~i~~-~~f~~~~~L~~L~  159 (284)
T d1ozna_          83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLF  159 (284)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEE
T ss_pred             cccccccccccccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhccccccccCh-hHhccccchhhcc
Confidence            999875 667788778899999999999999999865555544  778899999999999987654 3344444444333


Q ss_pred             CcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      ...                   ..+..++...+..+++|+.+++++|++++..|..|..+++|++|++++|+++++.
T Consensus       160 l~~-------------------N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         160 LHG-------------------NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             CCS-------------------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccc-------------------CcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            211                   1233455566677899999999999999889999999999999999999998653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.2e-21  Score=163.06  Aligned_cols=142  Identities=25%  Similarity=0.248  Sum_probs=106.7

Q ss_pred             CcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      +++++|+|++|.|+++++   ..+++|++|++++|           ++|++|++++|+++ ..+..+..+++|+.|++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            479999999999998876   45667777777777           67777777777777 4466677777777777777


Q ss_pred             CccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus        73 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                      |.+....+..+..+.++++|++++|.++...+..+..+++|+.+++++|++++..+..+  ..+++|++|+|++|+++.
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL--NGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT--TTCTTCCEEECCSSCCCC
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcccc--ccccccceeecccCCCcc
Confidence            77776666667777777777777777777666667777777777777777766555544  667777777777777773

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=4e-21  Score=167.02  Aligned_cols=226  Identities=20%  Similarity=0.219  Sum_probs=133.4

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l   86 (334)
                      +++++|++++|+|+.+++..+.++..        |++|++++|.+....|..|..+++|++|++++|+++ .+|..+  .
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~--------L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~   99 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKN--------LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--P   99 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTT--------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--C
T ss_pred             CCCCEEECcCCcCCCcChhHhhcccc--------ccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--h
Confidence            34555555555555554444444433        377777777777666677777777777777777777 344432  3


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      ..++.|++.+|.+.+..+..+.....++.++...|...........+..+++|+.+++++|.+... +...+.+++.+..
T Consensus       100 ~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~L~~L~l  178 (305)
T d1xkua_         100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLPPSLTELHL  178 (305)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCCTTCSEEEC
T ss_pred             hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-CcccCCccCEEEC
Confidence            456777777777666444444455555555555554322222222235566677777777766543 2232333333322


Q ss_pred             cCCcccc--cccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          167 GNNISVE--VDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       167 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ..+....  ...+........+......+..++...+..+++|++|+|++|+|+ .+|+.+.++++|++|++++|+|+.+
T Consensus       179 ~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            2211110  111122222222222233445566667777899999999999998 7788999999999999999999876


Q ss_pred             C
Q 019924          245 C  245 (334)
Q Consensus       245 ~  245 (334)
                      .
T Consensus       258 ~  258 (305)
T d1xkua_         258 G  258 (305)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=2.1e-20  Score=151.33  Aligned_cols=175  Identities=19%  Similarity=0.209  Sum_probs=140.5

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCcc-ccCcCccCCCCccEEeCCCCccccCCCccccCC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l   86 (334)
                      +.++++.++++++.++..-+++           +++|+|++|+|+. ..+..|.++++|+.|++++|+++...+..+..+
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp~~-----------l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~   77 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIPLH-----------TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTT-----------CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             cCCEEEEeCCCcCccCCCCCCC-----------CCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc
Confidence            3568999999999876543333           3788999999985 446778999999999999999998899999999


Q ss_pred             CCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhh
Q 019924           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (334)
Q Consensus        87 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  166 (334)
                      ++|++|++++|+++...+.+|.++++|++|+|++|+|++..+..+  ..+++|++|++++|.+.......++.       
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~~~~~~-------  148 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFA-------  148 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHH-------
T ss_pred             cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccchHHHh-------
Confidence            999999999999999888999999999999999999987767655  88999999999999987654333221       


Q ss_pred             cCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCC
Q 019924          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                                                            ..++.+.+..|.++...|..   +..++.++++.|.+++
T Consensus       149 --------------------------------------~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         149 --------------------------------------EWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             --------------------------------------HHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCC
T ss_pred             --------------------------------------hhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcC
Confidence                                                  11233456667777666654   4556788999998863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=3.7e-20  Score=165.59  Aligned_cols=228  Identities=21%  Similarity=0.237  Sum_probs=156.4

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCcccc-----------------
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKI-----------------   55 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~-----------------   55 (334)
                      .+++|++||+++|+++++++ ..+++|++|++++|           ++|+.|++++|.+++..                 
T Consensus        64 ~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT  143 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEE
T ss_pred             cCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46778888888888877765 66777888888777           56777777766654211                 


Q ss_pred             ----------------------------------------------CcCccCCCCccEEeCCCCccccCCCccccCCCCC
Q 019924           56 ----------------------------------------------PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (334)
Q Consensus        56 ----------------------------------------------p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L   89 (334)
                                                                    ...+..+++++.+++++|.+++..|  +..+++|
T Consensus       144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L  221 (384)
T d2omza2         144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNL  221 (384)
T ss_dssp             ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTC
T ss_pred             ccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccccCCC
Confidence                                                          1124445778888888888885543  4667899


Q ss_pred             CEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCC
Q 019924           90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN  169 (334)
Q Consensus        90 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~  169 (334)
                      ++|++++|+++. + ..+..+++|+.|++++|++++..+    +..+++|+.|++++|.+++..+   +..+..+..+..
T Consensus       222 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~~~l~~~~~---~~~~~~l~~l~~  292 (384)
T d2omza2         222 DELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISP---LAGLTALTNLEL  292 (384)
T ss_dssp             CEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEEC
T ss_pred             CEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc----ccccccCCEeeccCcccCCCCc---cccccccccccc
Confidence            999999999987 3 467889999999999999876443    3678999999999999987644   333333333332


Q ss_pred             cccccccccCCCCCCceeeEEEEEeccch-hhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          170 ISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      .......+........+..+.+..+.+.. ..+..+++|+.|++++|+++ .++ .+.++++|++|++++|+++++.
T Consensus       293 ~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         293 NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             cccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCCh
Confidence            22222222222222222233332222221 22566899999999999998 454 6899999999999999998865

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=8.4e-20  Score=163.25  Aligned_cols=229  Identities=22%  Similarity=0.252  Sum_probs=167.4

Q ss_pred             CCCcccEEEcCCCCCCCCCC-CCCCCCCeEECCCC-----------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCC
Q 019924            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~   72 (334)
                      .+.+|++|+++++.++.+.. ..+++|++|++++|           ++|++|++++|++.+..  .+..+++|+.|++++
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~  119 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFN  119 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccccc--ccccccccccccccc
Confidence            35789999999999988754 67899999999999           78999999999998543  388999999999998


Q ss_pred             CccccCC---------------------------------------------------------------CccccCCCCC
Q 019924           73 NRLEGPL---------------------------------------------------------------PPSLVNCHHL   89 (334)
Q Consensus        73 n~l~~~~---------------------------------------------------------------p~~l~~l~~L   89 (334)
                      |.+++..                                                               +..+..++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (384)
T d2omza2         120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL  199 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence            8875310                                                               1234566789


Q ss_pred             CEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCC
Q 019924           90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN  169 (334)
Q Consensus        90 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~  169 (334)
                      +.+++++|.+++..|  +..+++|++|++++|+++.. + .  +..+++|+.|++++|.+++..+   +..+++|+.++.
T Consensus       200 ~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~-~-~--l~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l  270 (384)
T d2omza2         200 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G-T--LASLTNLTDLDLANNQISNLAP---LSGLTKLTELKL  270 (384)
T ss_dssp             SEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G-G--GGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEEC
T ss_pred             ceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc-c-h--hhcccccchhccccCccCCCCc---ccccccCCEeec
Confidence            999999999988544  46789999999999998643 2 2  3778999999999999998765   344455544444


Q ss_pred             cccccccccCCCCCCceeeEEEEEeccc-hhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCC
Q 019924          170 ISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCG  246 (334)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~  246 (334)
                      .......+................+.+. ......+++++.|++++|++++. + .+..+++|+.|++++|+++++.+
T Consensus       271 ~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l~~  346 (384)
T d2omza2         271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDVSS  346 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCCGG
T ss_pred             cCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCChh
Confidence            3333322222222222222222222221 23356688999999999999954 3 38899999999999999987653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1.9e-18  Score=149.88  Aligned_cols=224  Identities=18%  Similarity=0.136  Sum_probs=143.0

Q ss_pred             cCCCcccEEEcCCCCCCCCCC---CCCCCCCeEECCCC----------CCCCEEeCCCCcCccccCcCccCCCCccEEeC
Q 019924            4 LGIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L   70 (334)
                      .++++|++|++++|.+..+++   ..++.|+.|++++|          ..++.|++++|.+.+..+..+.....+..++.
T Consensus        52 ~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~  131 (305)
T d1xkua_          52 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL  131 (305)
T ss_dssp             TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred             hccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhcccccccccc
Confidence            468999999999999999877   45678888999887          46788888888887655555555556666666


Q ss_pred             CCCccc--cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCc
Q 019924           71 NGNRLE--GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (334)
Q Consensus        71 ~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  148 (334)
                      ..|...  ...+..+..+++|+.+++++|.+.. +|..  .+++|++|++++|..++..+..+  ..++.++.|++++|.
T Consensus       132 ~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~--~~~~~l~~L~~s~n~  206 (305)
T d1xkua_         132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNS  206 (305)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSC
T ss_pred             ccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHh--hcccccccccccccc
Confidence            655432  2234456666666666666666655 2322  24566666666666655544433  556666666666666


Q ss_pred             cccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchh----
Q 019924          149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV----  224 (334)
Q Consensus       149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----  224 (334)
                      +.+..+ ..+.++++|+.++...+.                   +..++. .+..+++|++|+|++|+|+......    
T Consensus       207 l~~~~~-~~~~~l~~L~~L~L~~N~-------------------L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         207 ISAVDN-GSLANTPHLRELHLNNNK-------------------LVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             CCEECT-TTGGGSTTCCEEECCSSC-------------------CSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             cccccc-ccccccccceeeeccccc-------------------cccccc-ccccccCCCEEECCCCccCccChhhccCc
Confidence            665433 334444444433332211                   111221 2334789999999999998543333    


Q ss_pred             --hhCcCCCCeeeccCCccCCCCCCCccCCC
Q 019924          225 --VGKLNLLKGLNISHNNLTGLCGFPLLESC  253 (334)
Q Consensus       225 --l~~l~~L~~L~Ls~N~l~~l~~~~~~~~c  253 (334)
                        ...+++|+.|++++|+++.....|..-.|
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~  296 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  296 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             chhcccCCCCEEECCCCcCccCcCCHhHhcc
Confidence              35678899999999998766555555455

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=9.8e-19  Score=143.40  Aligned_cols=165  Identities=22%  Similarity=0.261  Sum_probs=113.4

Q ss_pred             CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccC
Q 019924            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN   85 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~   85 (334)
                      +.+|+.|++++|.++...+  +..+        ++|++|++++|++++..  .++.+++|++|++++|++++ +| .+.+
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l~~l--------~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~  110 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--IQYL--------PNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKD  110 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred             hcCccEEECcCCCCCCchh--HhhC--------CCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccc
Confidence            4567777777777765432  1112        44577788888887533  35677888888888888873 44 4777


Q ss_pred             CCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhh
Q 019924           86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM  165 (334)
Q Consensus        86 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  165 (334)
                      +++|+.|++++|.+..  ...+..++.++.+++++|.+++..    .+..+++|+.+++++|++++..+   +       
T Consensus       111 l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~----~~~~l~~L~~l~l~~n~l~~i~~---l-------  174 (210)
T d1h6ta2         111 LKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP---L-------  174 (210)
T ss_dssp             CTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG---G-------
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccc----ccccccccccccccccccccccc---c-------
Confidence            8888888888887765  235677788888888888775322    12567788888888888765422   1       


Q ss_pred             hcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccC
Q 019924          166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH  238 (334)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  238 (334)
                                                          ..+++|+.|+|++|+++ .+| .+.++++|++|+|++
T Consensus       175 ------------------------------------~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 ------------------------------------AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ------------------------------------TTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             ------------------------------------cCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence                                                12567888888888887 454 578888888888863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=8.8e-18  Score=139.34  Aligned_cols=173  Identities=20%  Similarity=0.282  Sum_probs=120.6

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      ++.+|+.|++.+|.++.+.+  +..+        ++|++|++++|++++..|  +..+++++++++++|.++ .++ .+.
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~--l~~l--------~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~  104 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEG--VQYL--------NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA  104 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT
T ss_pred             HcCCcCEEECCCCCCCcchh--HhcC--------CCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccc
Confidence            46788999999998876532  2233        344888888888875433  788888888888888887 333 577


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  164 (334)
                      ++++|++++++++...+.  ..+...+.++.+.++.+.+....+    +...++|+.|++++|.+.+..+   +.     
T Consensus       105 ~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~---l~-----  170 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---LA-----  170 (227)
T ss_dssp             TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GT-----
T ss_pred             cccccccccccccccccc--chhccccchhhhhchhhhhchhhh----hccccccccccccccccccchh---hc-----
Confidence            888888888888887653  345667788888888877643322    3567788888888887764322   11     


Q ss_pred             hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCC
Q 019924          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                                                            .+++|++|+|++|++++ ++ .++++++|++|++++|+++++
T Consensus       171 --------------------------------------~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         171 --------------------------------------NLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             --------------------------------------TCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             --------------------------------------ccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC
Confidence                                                  14567777777777763 33 367777777777777777765


Q ss_pred             C
Q 019924          245 C  245 (334)
Q Consensus       245 ~  245 (334)
                      .
T Consensus       211 ~  211 (227)
T d1h6ua2         211 S  211 (227)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.4e-17  Score=135.31  Aligned_cols=146  Identities=26%  Similarity=0.295  Sum_probs=88.8

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecc
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  121 (334)
                      ++|++++|.++. + +.++.+++|++|++++|++++. + .+.++++|++|++++|.+... + .+..+++|++|++++|
T Consensus        43 ~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          43 TTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNN  116 (199)
T ss_dssp             CEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSS
T ss_pred             CEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-c-cccCCcccccccccccccccc-c-cccccccccccccccc
Confidence            566666666663 2 2356667777777777777643 2 266777777777777766552 2 3666777777777776


Q ss_pred             cCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhh
Q 019924          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (334)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  201 (334)
                      .+....    .+..+++|+.|++++|++.....   +                                           
T Consensus       117 ~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~---l-------------------------------------------  146 (199)
T d2omxa2         117 QITDID----PLKNLTNLNRLELSSNTISDISA---L-------------------------------------------  146 (199)
T ss_dssp             CCCCCG----GGTTCTTCSEEECCSSCCCCCGG---G-------------------------------------------
T ss_pred             cccccc----ccchhhhhHHhhhhhhhhccccc---c-------------------------------------------
Confidence            654321    12556777777777776653211   0                                           


Q ss_pred             hhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       202 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      ..+++++.|++++|++++ ++ .+.++++|+.|++++|+++++.
T Consensus       147 ~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             TTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCCCc
Confidence            014556677777777663 22 3666777777777777766543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.1e-17  Score=138.83  Aligned_cols=127  Identities=20%  Similarity=0.269  Sum_probs=62.8

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      .+++|++|++++|.+++..+  +..+.        +++++++++|.++. + ..+.++++|+.++++++...+.  ..+.
T Consensus        61 ~l~~L~~L~ls~n~i~~~~~--l~~l~--------~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~  126 (227)
T d1h6ua2          61 YLNNLIGLELKDNQITDLAP--LKNLT--------KITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLA  126 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCC--------SCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGT
T ss_pred             cCCCCcEeecCCceeecccc--ccccc--------cccccccccccccc-c-cccccccccccccccccccccc--chhc
Confidence            35556666666665554432  22222        22555555555542 2 2345555566666655555422  2244


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                      ..+.++.+.++++.+...  ..+..+++|++|++++|.+.+..    .+..+++|+.|++++|++++
T Consensus       127 ~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT----PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC
T ss_pred             cccchhhhhchhhhhchh--hhhccccccccccccccccccch----hhcccccceecccCCCccCC
Confidence            455555566655555432  22445555666666655553221    12455556666666655543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=1.6e-17  Score=134.05  Aligned_cols=151  Identities=21%  Similarity=0.220  Sum_probs=113.4

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCCccccC-CCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      ++++.++++++ .+|..+.  +++++|+|++|+|++. .+..|.++++|++|++++|.+....+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            67889999998 6676653  6889999999999753 456778899999999999999888888888899999999999


Q ss_pred             ccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhh
Q 019924          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM  200 (334)
Q Consensus       121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  200 (334)
                      |++++..+..+  .++++|++|+|++|++++..+.. |                                          
T Consensus        88 N~l~~l~~~~F--~~l~~L~~L~L~~N~l~~i~~~~-f------------------------------------------  122 (192)
T d1w8aa_          88 NKIKEISNKMF--LGLHQLKTLNLYDNQISCVMPGS-F------------------------------------------  122 (192)
T ss_dssp             CCCCEECSSSS--TTCTTCCEEECCSSCCCEECTTS-S------------------------------------------
T ss_pred             ccccccCHHHH--hCCCcccccccCCccccccCHHH-h------------------------------------------
Confidence            99976666654  88899999999999988654422 1                                          


Q ss_pred             hhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccC
Q 019924          201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (334)
Q Consensus       201 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  242 (334)
                       ..+++|++|+|++|.+...... ..-...++.+.+..|.++
T Consensus       123 -~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_         123 -EHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             -TTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCB
T ss_pred             -cCCcccccccccccccccccch-HHHhhhhhhhcccCCCeE
Confidence             2256788889998888743321 111233556666766654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4e-17  Score=132.50  Aligned_cols=162  Identities=27%  Similarity=0.322  Sum_probs=128.0

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      .++++++|++++|.++.+..  +..+        ++|++|++++|++++..|  ++++++|++|++++|.+. .++ .+.
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~--l~~l--------~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~  103 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDG--VEYL--------NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLA  103 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT
T ss_pred             HhcCCCEEECCCCCCCCccc--cccC--------CCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccc
Confidence            35788889999888876432  1222        556999999999986443  899999999999999998 344 488


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhh
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  164 (334)
                      ++++|+.|++++|.+...  ..+..+++|+.|++++|++.. ++ .  +..+++|+.|++++|++++..+   +      
T Consensus       104 ~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~--l~~~~~L~~L~l~~n~l~~l~~---l------  168 (199)
T d2omxa2         104 NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-A--LSGLTSLQQLNFSSNQVTDLKP---L------  168 (199)
T ss_dssp             TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-G--GTTCTTCSEEECCSSCCCCCGG---G------
T ss_pred             cccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-c--ccccccccccccccccccCCcc---c------
Confidence            999999999999998763  457889999999999999853 22 2  3788999999999999986532   1      


Q ss_pred             hhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCee
Q 019924          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL  234 (334)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  234 (334)
                                                           ..+++|++|++++|++++ ++ .++++++|+.|
T Consensus       169 -------------------------------------~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         169 -------------------------------------ANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             -------------------------------------TTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             -------------------------------------cCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence                                                 126789999999999984 44 58889998876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.3e-16  Score=130.57  Aligned_cols=148  Identities=26%  Similarity=0.321  Sum_probs=117.4

Q ss_pred             CCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEee
Q 019924           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (334)
Q Consensus        40 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  119 (334)
                      +|++|++++|.++.. + .+..+++|++|++++|++++. + .+..+++|++|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            448889999988743 3 477899999999999999853 3 36789999999999999987 44 47889999999999


Q ss_pred             cccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchh
Q 019924          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK  199 (334)
Q Consensus       120 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  199 (334)
                      +|.+...  .  .+..++.++.+++++|.+++....                                            
T Consensus       121 ~~~~~~~--~--~l~~l~~l~~l~~~~n~l~~~~~~--------------------------------------------  152 (210)
T d1h6ta2         121 HNGISDI--N--GLVHLPQLESLYLGNNKITDITVL--------------------------------------------  152 (210)
T ss_dssp             TSCCCCC--G--GGGGCTTCCEEECCSSCCCCCGGG--------------------------------------------
T ss_pred             ccccccc--c--cccccccccccccccccccccccc--------------------------------------------
Confidence            9987432  2  237788999999999988754221                                            


Q ss_pred             hhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       200 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                        ..+++|+.+++++|++++ ++ .+.++++|+.|++++|+++++.
T Consensus       153 --~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         153 --SRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             --GGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCBCG
T ss_pred             --cccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCCCh
Confidence              126779999999999984 44 3889999999999999998764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.8e-17  Score=134.12  Aligned_cols=204  Identities=13%  Similarity=0.005  Sum_probs=132.3

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccC-CCccccCCCC
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP-LPPSLVNCHH   88 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~   88 (334)
                      +.++.+++.++.+++.-++++           ++|++++|+|+...+..|.++++|++|++++|.+... .+..|.++++
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~l-----------~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRNA-----------IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSCC-----------SEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             CEEEEeCCCCCCcCCCCCCCC-----------CEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccc
Confidence            678888888887665333333           7788889999866666789999999999999988754 3556888899


Q ss_pred             CCEEEccC-CcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCCCCCCCccEEEecCCccccccchhhHHhHH-hhhh
Q 019924           89 LEVLNVGN-NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK-AMMH  166 (334)
Q Consensus        89 L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~  166 (334)
                      ++++++.. |.+....+..|..+++|+++++++|++....+ ......+..+..+..+++.+....+.. +..+. .+..
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~~-~~~~~~~l~~  157 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNS-FVGLSFESVI  157 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECTTS-STTSBSSCEE
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccc-ccccccccccccccccccccccccccc-ccccccccee
Confidence            99988764 67777777888899999999999998854322 222244566666666666665443222 11111 1111


Q ss_pred             cCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCC
Q 019924          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLC  245 (334)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~  245 (334)
                      +..                   ....+..+....+......+.+++++|+++...+..|.++++|++|++++|+|+.+.
T Consensus       158 L~l-------------------~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         158 LWL-------------------NKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             EEC-------------------CSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             eec-------------------ccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence            111                   001122223333332223344567788888544556888999999999999988654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=3.2e-15  Score=131.25  Aligned_cols=86  Identities=28%  Similarity=0.354  Sum_probs=50.2

Q ss_pred             cccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccC
Q 019924            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP   78 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~   78 (334)
                      ++++|||++|.++.++ ..+++|++|++++|         .+|+.|++++|+++ .++..   .+.|++|++++|.++ .
T Consensus        39 ~l~~LdLs~~~L~~lp-~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~  112 (353)
T d1jl5a_          39 QAHELELNNLGLSSLP-ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-K  112 (353)
T ss_dssp             TCSEEECTTSCCSCCC-SCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-S
T ss_pred             CCCEEEeCCCCCCCCC-CCCCCCCEEECCCCCCcccccchhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-c
Confidence            4666677777666544 34456666666666         45666666666665 22221   134666666666665 3


Q ss_pred             CCccccCCCCCCEEEccCCcCC
Q 019924           79 LPPSLVNCHHLEVLNVGNNQIN  100 (334)
Q Consensus        79 ~p~~l~~l~~L~~L~Ls~N~l~  100 (334)
                      +|. ++.+++|++|++++|.+.
T Consensus       113 lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         113 LPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccc-hhhhccceeecccccccc
Confidence            443 455666666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.7e-17  Score=136.10  Aligned_cols=202  Identities=13%  Similarity=0.047  Sum_probs=143.2

Q ss_pred             CcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCcccc-CcCccCCCCccEEeCCC-CccccCCCcccc
Q 019924            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI-PRKFVKSCNLTSLNLNG-NRLEGPLPPSLV   84 (334)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~   84 (334)
                      +++++||+++|.++.+++..+.++..|        ++|++++|.+...+ +..|.++++++++.+.. |++....+..|.
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L--------~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~  100 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDL--------EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  100 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTC--------CEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchh--------hhhhhccccccceeecccccccccccccccccccccccccccccc
Confidence            479999999999998887777777655        99999999987544 56788999999998764 678777888899


Q ss_pred             CCCCCCEEEccCCcCCcCCCh-hhhcCCCCCEEEeecccCcccCCCCCCCCCC-CCccEEEecCCccccccchhhHHhHH
Q 019924           85 NCHHLEVLNVGNNQINDNFPN-WLEILPELQVLILRSNRFWGPIGENTTIVPF-PSLRIIDLSHNEFTGVLLTGYLDNFK  162 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~  162 (334)
                      ++++|+++++++|++....+. .+..++.+..+...++.+....+..+  ..+ ..++.|++++|+++...... +.. .
T Consensus       101 ~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~--~~~~~~l~~L~l~~n~l~~i~~~~-~~~-~  176 (242)
T d1xwdc1         101 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGIQEIHNCA-FNG-T  176 (242)
T ss_dssp             CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCCCEECTTT-TTT-C
T ss_pred             ccccccccccchhhhccccccccccccccccccccccccccccccccc--ccccccceeeeccccccccccccc-ccc-h
Confidence            999999999999999764332 33455666666777777754433333  444 47889999999998654322 211 1


Q ss_pred             hhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcccccCCchhhhCcCCCCeeeccC
Q 019924          163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH  238 (334)
Q Consensus       163 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  238 (334)
                      .+.....       .           ....+..++...+..+++|++|+|++|+++...+..|.+++.|+.+++.+
T Consensus       177 ~l~~~~~-------l-----------~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         177 QLDELNL-------S-----------DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CEEEEEC-------T-----------TCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             hhhcccc-------c-----------cccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            1100000       0           00112344555667789999999999999965566788888888887754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.1e-16  Score=116.84  Aligned_cols=103  Identities=29%  Similarity=0.456  Sum_probs=54.7

Q ss_pred             EEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeeccc
Q 019924           43 VLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR  122 (334)
Q Consensus        43 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~  122 (334)
                      +|++++|+++ .++ .+..+++|++|++++|+++ .+|+.+..+++|++|++++|++++ +| .++.+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4555555555 333 2555555666666666655 345555555666666666666554 22 35555666666666665


Q ss_pred             CcccCCCCCCCCCCCCccEEEecCCcccc
Q 019924          123 FWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus       123 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  151 (334)
                      +++. +....+..+++|+.|++++|.+++
T Consensus        77 i~~~-~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQS-AAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSS-STTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCC-CCchhhcCCCCCCEEECCCCcCCc
Confidence            5422 211123455566666666666543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=4.7e-16  Score=115.85  Aligned_cols=120  Identities=23%  Similarity=0.244  Sum_probs=93.9

Q ss_pred             cEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCC
Q 019924           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (334)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L   89 (334)
                      |+||+++|+++..+.  +.++.        .|++|++++|+|+ .+|..|+.+++|+.|++++|+|++ +| .+.++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~--------~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L   67 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLL--------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRL   67 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGT--------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSC
T ss_pred             CEEEcCCCCCCCCcc--cccCC--------CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-cccccccc
Confidence            689999999986642  34444        4499999999998 678889999999999999999994 44 58999999


Q ss_pred             CEEEccCCcCCcCC-ChhhhcCCCCCEEEeecccCcccCCCCC-CCCCCCCccEE
Q 019924           90 EVLNVGNNQINDNF-PNWLEILPELQVLILRSNRFWGPIGENT-TIVPFPSLRII  142 (334)
Q Consensus        90 ~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L  142 (334)
                      ++|++++|+++... ...+..+++|++|++++|+++....... ....+|+|+.|
T Consensus        68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999999998743 2568899999999999999864321111 12335666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.8e-16  Score=122.83  Aligned_cols=106  Identities=23%  Similarity=0.263  Sum_probs=50.0

Q ss_pred             CCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        41 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      +++|+|++|+|+ .++..+..+++|+.|++++|+|+. ++ .+..+++|++|++++|+++...+..+..+++|++|++++
T Consensus        20 lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          20 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             CEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             CcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            355555555555 334444445555555555555552 22 345555555555555555554333444455555555555


Q ss_pred             ccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus       121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      |+++.. +....+..+++|++|++++|.++
T Consensus        97 N~i~~~-~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          97 NSLVEL-GDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCCCCG-GGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccc-ccccccccccccchhhcCCCccc
Confidence            554321 11111234444444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=1.5e-14  Score=126.91  Aligned_cols=226  Identities=21%  Similarity=0.205  Sum_probs=129.8

Q ss_pred             CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCC---------CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccc
Q 019924            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (334)
                      +++|++|++++|+|+.++ ..+.+|+.|++++|         +.|++|++++|.++ .+|. +..+++|+.|++++|.++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp-~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CTTCSEEECCSSCCSSCC-CCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCCCcccc-cchhhhhhhhhhhcccchhhhhccccccccccccccc-cccc-hhhhccceeecccccccc
Confidence            478999999999999764 56789999999999         57999999999998 5564 678999999999999887


Q ss_pred             cCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCC----------------CCCCCCCCCCcc
Q 019924           77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG----------------ENTTIVPFPSLR  140 (334)
Q Consensus        77 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~----------------~~~~~~~l~~L~  140 (334)
                      .. +..   ...+..+.+..+....  +..+..++.++.+++++|.+.....                .......++.|+
T Consensus       134 ~~-~~~---~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~  207 (353)
T d1jl5a_         134 KL-PDL---PPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT  207 (353)
T ss_dssp             CC-CCC---CTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             cc-ccc---cccccchhhccccccc--cccccccccceeccccccccccccccccccccccccccccccccccccccccc
Confidence            33 322   2345555555544432  2334455555666655554422110                000124566777


Q ss_pred             EEEecCCccccccchhhHHhHHhhhhcCCccccccc-c-------------cCCCCCC-ceeeEEEEEeccchhhhhhhh
Q 019924          141 IIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDY-M-------------TPLNSSN-YYESIILTIKGIDIKMERILT  205 (334)
Q Consensus       141 ~L~Ls~N~l~~~~~~~~~~~l~~L~~~~~~~~~~~~-~-------------~~~~~~~-~l~~~~~~~~~~~~~~~~~l~  205 (334)
                      .+++++|.......  ....+..+............ .             ....... ........... .......++
T Consensus       208 ~l~l~~n~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~  284 (353)
T d1jl5a_         208 TIYADNNLLKTLPD--LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE-IRSLCDLPP  284 (353)
T ss_dssp             EEECCSSCCSSCCS--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSC-CSEECCCCT
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccchhcccccccCc-cccccccCC
Confidence            77777776553321  11111111111110000000 0             0000000 00000000000 011122357


Q ss_pred             heeEEEccCcccccCCchhhhCcCCCCeeeccCCccCCCCCC
Q 019924          206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGLCGF  247 (334)
Q Consensus       206 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~l~~~  247 (334)
                      +|++|+|++|+++ .+|..   +++|+.|++++|+|+.+...
T Consensus       285 ~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~l~~~  322 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAEVPEL  322 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCC
T ss_pred             CCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCccccc
Confidence            8999999999998 66653   57888999999998877654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.1e-16  Score=120.19  Aligned_cols=127  Identities=21%  Similarity=0.159  Sum_probs=100.4

Q ss_pred             CCCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         5 ~l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      ++.+++.|||++|+|+.++. .+..+..|        ++|++++|+|+. + +.|..+++|++|++++|+++...+..+.
T Consensus        16 n~~~lr~L~L~~n~I~~i~~-~~~~l~~L--------~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~   84 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIEN-LGATLDQF--------DAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQ   84 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCC--------SEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             CcCcCcEEECCCCCCCccCc-cccccccC--------CEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccc
Confidence            56789999999999998743 22344444        899999999984 4 3588999999999999999966666677


Q ss_pred             CCCCCCEEEccCCcCCcCCC-hhhhcCCCCCEEEeecccCcccCCC--CCCCCCCCCccEEE
Q 019924           85 NCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGE--NTTIVPFPSLRIID  143 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~  143 (334)
                      .+++|++|++++|+++.... ..+..+++|++|++++|+++.. +.  ...+..+++|+.||
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~-~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEET
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCCccccc-cchHHHHHHHCCCcCeeC
Confidence            89999999999999987422 4678999999999999998543 22  11236789999887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=8.1e-15  Score=128.83  Aligned_cols=214  Identities=15%  Similarity=0.120  Sum_probs=135.5

Q ss_pred             CCcccEEEcCCCCCCCCCC-------CCCCCCCeEECCCC-----------------------CCCCEEeCCCCcCccc-
Q 019924            6 IATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------------LTHKVLDMRMNNFNGK-   54 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n-----------------------~~L~~L~Ls~N~l~~~-   54 (334)
                      .++|+.|+|++|.++....       ...++|+.++++++                       ++|++|++++|.++.. 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            5778999999998864321       56778888888765                       6799999999988753 


Q ss_pred             ---cCcCccCCCCccEEeCCCCccccCCC----c---------cccCCCCCCEEEccCCcCCcCC----ChhhhcCCCCC
Q 019924           55 ---IPRKFVKSCNLTSLNLNGNRLEGPLP----P---------SLVNCHHLEVLNVGNNQINDNF----PNWLEILPELQ  114 (334)
Q Consensus        55 ---~p~~~~~l~~L~~L~L~~n~l~~~~p----~---------~l~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~  114 (334)
                         +...+...++|+.|++++|.++..-.    .         .....+.|+.+++++|.++...    ...+...+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               33445567899999999998752110    1         1135678899999998886432    23455678899


Q ss_pred             EEEeecccCccc-----CCCCCCCCCCCCccEEEecCCccccccchhhHH---hHHhhhhcCCcccccccccCCCCCCce
Q 019924          115 VLILRSNRFWGP-----IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLD---NFKAMMHGNNISVEVDYMTPLNSSNYY  186 (334)
Q Consensus       115 ~L~L~~N~l~~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~l~~L~~~~~~~~~~~~~~~~~~~~~l  186 (334)
                      +|++++|+++..     +...  +...++|+.|++++|.++.........   ..+.|+.++.                 
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~--l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L-----------------  250 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEG--LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL-----------------  250 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTT--GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC-----------------
T ss_pred             ccccccccccccccccchhhh--hcchhhhcccccccccccccccccccccccccccchhhhh-----------------
Confidence            999999987532     1222  366788999999999876432211111   1111211111                 


Q ss_pred             eeEEEEEeccchh-------hhh--hhhheeEEEccCcccccCC----chhhh-CcCCCCeeeccCCccCC
Q 019924          187 ESIILTIKGIDIK-------MER--ILTIFMTIDLSSNKFQGGI----PEVVG-KLNLLKGLNISHNNLTG  243 (334)
Q Consensus       187 ~~~~~~~~~~~~~-------~~~--~l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L~~L~Ls~N~l~~  243 (334)
                           ..+.+...       ...  ..+.|++||+++|.++...    ...+. +++.|+.|++++|+++.
T Consensus       251 -----s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         251 -----NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             -----TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             -----hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence                 11111111       011  1246888888888887432    33332 56788888888888754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.48  E-value=2.9e-16  Score=127.01  Aligned_cols=91  Identities=24%  Similarity=0.341  Sum_probs=55.3

Q ss_pred             ccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCCCCC
Q 019924           54 KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI  133 (334)
Q Consensus        54 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  133 (334)
                      .+|..+..+++|++|+|++|+|+ .++ .+.++++|++|++++|+++. +|..+..+++|++|++++|+++.. + .  +
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l-~-~--~  111 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL-S-G--I  111 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH-H-H--H
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccc-cccccccccccccccccccccccc-c-c--c
Confidence            34455666677777777777776 333 46666777777777777665 444444455677777777766432 1 1  2


Q ss_pred             CCCCCccEEEecCCcccc
Q 019924          134 VPFPSLRIIDLSHNEFTG  151 (334)
Q Consensus       134 ~~l~~L~~L~Ls~N~l~~  151 (334)
                      ..+++|+.|++++|+++.
T Consensus       112 ~~l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHHHSSEEEESEEECCC
T ss_pred             cccccccccccccchhcc
Confidence            455666666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=9.1e-15  Score=128.49  Aligned_cols=197  Identities=14%  Similarity=0.088  Sum_probs=125.9

Q ss_pred             CCCCCCCeEECCCC-----------------CCCCEEeCCCCcCccc----------cCcCccCCCCccEEeCCCCcccc
Q 019924           25 FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGK----------IPRKFVKSCNLTSLNLNGNRLEG   77 (334)
Q Consensus        25 ~~~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~----------~p~~~~~l~~L~~L~L~~n~l~~   77 (334)
                      .....++.|++++|                 ++|+.++++++.....          +...+..+++|+.|++++|.++.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            34678999999998                 7899999998765421          22335678899999999999875


Q ss_pred             C----CCccccCCCCCCEEEccCCcCCcCCChh-------------hhcCCCCCEEEeecccCcccCCCCC--CCCCCCC
Q 019924           78 P----LPPSLVNCHHLEVLNVGNNQINDNFPNW-------------LEILPELQVLILRSNRFWGPIGENT--TIVPFPS  138 (334)
Q Consensus        78 ~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-------------l~~l~~L~~L~L~~N~l~~~~~~~~--~~~~l~~  138 (334)
                      .    +...+..+++|++|++++|.++......             ....+.|+.+++++|+++......+  .+...+.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence            4    3345567899999999999875321111             1356789999999998753221111  1245688


Q ss_pred             ccEEEecCCccccccchhh----HHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccch-------hhhhhhhhe
Q 019924          139 LRIIDLSHNEFTGVLLTGY----LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-------KMERILTIF  207 (334)
Q Consensus       139 L~~L~Ls~N~l~~~~~~~~----~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~l~~L  207 (334)
                      |+.|++++|.+........    +...+.|..                      +++..+.+..       ......++|
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~----------------------L~Ls~N~i~~~g~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV----------------------LDLQDNTFTHLGSSALAIALKSWPNL  245 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE----------------------EECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             hcccccccccccccccccchhhhhcchhhhcc----------------------cccccccccccccccccccccccccc
Confidence            9999999999874311111    111111111                      1111122211       123346778


Q ss_pred             eEEEccCcccccCCchh----hhC--cCCCCeeeccCCccCC
Q 019924          208 MTIDLSSNKFQGGIPEV----VGK--LNLLKGLNISHNNLTG  243 (334)
Q Consensus       208 ~~L~Ls~N~l~~~~p~~----l~~--l~~L~~L~Ls~N~l~~  243 (334)
                      ++|+|++|.+++.....    +..  .+.|+.|++++|+|+.
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            88888888887543333    332  3568888998888763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.9e-15  Score=126.74  Aligned_cols=183  Identities=16%  Similarity=0.130  Sum_probs=107.6

Q ss_pred             CCCCEEeCCCCcCccc-cCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCC-cCCcC-CChhhhcCCCCCE
Q 019924           39 LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN-QINDN-FPNWLEILPELQV  115 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~~~~l~~l~~L~~  115 (334)
                      .+|++||++++.++.. ++..+..+++|++|++++|.+++..+..++.+++|++|+++++ .+++. .......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4568888888777643 3445677788888888888877666667777788888888874 45432 1223346788888


Q ss_pred             EEeeccc-CcccCCCCCCCCCCCCccEEEecCC--ccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEE
Q 019924          116 LILRSNR-FWGPIGENTTIVPFPSLRIIDLSHN--EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT  192 (334)
Q Consensus       116 L~L~~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (334)
                      |+++++. ++............++|+.|+++++  .++.........++++|+.++.....                  .
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~------------------~  187 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV------------------M  187 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT------------------T
T ss_pred             cccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc------------------C
Confidence            8887753 3211100000022457788888764  23322222223333344333321100                  0


Q ss_pred             EeccchhhhhhhhheeEEEccCc-ccccCCchhhhCcCCCCeeeccCC
Q 019924          193 IKGIDIKMERILTIFMTIDLSSN-KFQGGIPEVVGKLNLLKGLNISHN  239 (334)
Q Consensus       193 ~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N  239 (334)
                      +++........+++|++|++++| .+++.....++++++|+.|+++++
T Consensus       188 itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            01111122334678899999985 677777777888899999999887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-12  Score=101.47  Aligned_cols=105  Identities=19%  Similarity=0.093  Sum_probs=84.0

Q ss_pred             CEEeCCCCcCccccCcCccCCCCccEEeCCCC-ccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeec
Q 019924           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN-RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (334)
Q Consensus        42 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  120 (334)
                      +.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+...+.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            56788888887 56777888889999999766 48866667888999999999999999888788899999999999999


Q ss_pred             ccCcccCCCCCCCCCCCCccEEEecCCccc
Q 019924          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus       121 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  150 (334)
                      |+++...+..+   ...+|+.|++++|.+.
T Consensus        90 N~l~~l~~~~~---~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTV---QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTT---CSCCCCEEECCSSCCC
T ss_pred             CCCcccChhhh---ccccccccccCCCccc
Confidence            99864333333   3446889999999885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.3e-12  Score=98.61  Aligned_cols=108  Identities=16%  Similarity=0.038  Sum_probs=88.3

Q ss_pred             CCcccEEEcCCCCCCCCCCCCCCCCCeEECCCCCCCCEEeCCCC-cCccccCcCccCCCCccEEeCCCCccccCCCcccc
Q 019924            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMN-NFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (334)
Q Consensus         6 l~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~   84 (334)
                      +...+.++.+++.+...+ ..++.++.|        ++|++++| .++...+..|.++++|+.|++++|+|+...|.+|.
T Consensus         7 c~~~~~l~c~~~~~~~~p-~~l~~l~~l--------~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~   77 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSL-HHLPGAENL--------TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH   77 (156)
T ss_dssp             CSSSSCEECCSSCCCTTT-TTSCSCSCC--------SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred             cCCCCeEEecCCCCccCc-ccccCcccc--------CeeecCCCccccccCchhhccccccCcceeeccccCCccccccc
Confidence            345667899998887654 334444444        88899766 58877778899999999999999999988888999


Q ss_pred             CCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccC
Q 019924           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF  123 (334)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l  123 (334)
                      ++++|++|+|++|+++...+..+.. ..|++|+|++|.+
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          78 FTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             SCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             ccccccceeccCCCCcccChhhhcc-ccccccccCCCcc
Confidence            9999999999999999866666654 4799999999987

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=1.8e-15  Score=122.22  Aligned_cols=109  Identities=25%  Similarity=0.216  Sum_probs=86.2

Q ss_pred             CCCCEEeCCCCcCccccCcCccCCCCccEEeCCCCccccCCCccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEe
Q 019924           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (334)
Q Consensus        39 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  118 (334)
                      ++|++|+|++|+|+ .++ .+..+++|+.|++++|+|+ .+|..+..+++|++|++++|+++..  ..+..+++|++|++
T Consensus        48 ~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEE
T ss_pred             cccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccccccccc
Confidence            55699999999998 444 5888999999999999998 5666556667899999999999873  45778899999999


Q ss_pred             ecccCcccCCCCCCCCCCCCccEEEecCCcccccc
Q 019924          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (334)
Q Consensus       119 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  153 (334)
                      ++|+++... ....+..+++|+.|++++|.+....
T Consensus       123 ~~N~i~~~~-~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         123 SNNKITNWG-EIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             SEEECCCHH-HHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccchhcccc-ccccccCCCccceeecCCCccccCc
Confidence            999986432 1112377899999999999886543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.2e-13  Score=123.43  Aligned_cols=93  Identities=19%  Similarity=0.313  Sum_probs=56.1

Q ss_pred             cccEEEcCCCCCCCCCC----CCCCCCCeEECCCC-----------------CCCCEEeCCCCcCccc----cCcCcc-C
Q 019924            8 TLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGK----IPRKFV-K   61 (334)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-----------------~~L~~L~Ls~N~l~~~----~p~~~~-~   61 (334)
                      +|+.||+++|++++...    ..+++++.|+|++|                 ++|++|||++|+|+..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            56777777777765322    34566666776666                 5677777777776521    122222 2


Q ss_pred             CCCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCC
Q 019924           62 SCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQIN  100 (334)
Q Consensus        62 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  100 (334)
                      ..+|++|++++|+++..    ++..+..+++|++|++++|.++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            34677777777776533    3445566677777777777653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.4e-12  Score=109.72  Aligned_cols=191  Identities=14%  Similarity=0.156  Sum_probs=129.6

Q ss_pred             cCCCcccEEEcCCCCCCCCCC----CCCCCCCeEECCCC-------------CCCCEEeCCCC-cCccc-cCcCccCCCC
Q 019924            4 LGIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-------------LTHKVLDMRMN-NFNGK-IPRKFVKSCN   64 (334)
Q Consensus         4 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-------------~~L~~L~Ls~N-~l~~~-~p~~~~~l~~   64 (334)
                      ....+|++||++++.++....    ..+++|++|++++|             ++|++|+++++ .++.. +...+..+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            356789999999998875332    67899999999988             78999999995 56632 2233456899


Q ss_pred             ccEEeCCCC-ccccC-CCcccc-CCCCCCEEEccCC--cCCcC-CChhhhcCCCCCEEEeeccc-CcccCCCCCCCCCCC
Q 019924           65 LTSLNLNGN-RLEGP-LPPSLV-NCHHLEVLNVGNN--QINDN-FPNWLEILPELQVLILRSNR-FWGPIGENTTIVPFP  137 (334)
Q Consensus        65 L~~L~L~~n-~l~~~-~p~~l~-~l~~L~~L~Ls~N--~l~~~-~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~  137 (334)
                      |++|++++| .++.. ++..+. ..++|+.|+++++  .++.. +......+++|++|++++|. +++.....+  ..++
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l--~~~~  200 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLN  200 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCT
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh--cccC
Confidence            999999997 44422 222233 3578999999975  34332 23344678999999999874 665554444  7889


Q ss_pred             CccEEEecCC-ccccccchhhHHhHHhhhhcCCcccccccccCCCCCCceeeEEEEEeccchhhhhhhhheeEEEccCcc
Q 019924          138 SLRIIDLSHN-EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK  216 (334)
Q Consensus       138 ~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  216 (334)
                      +|++|++++| .+++...    ..+                                        ..+++|+.|+++++ 
T Consensus       201 ~L~~L~L~~C~~i~~~~l----~~L----------------------------------------~~~~~L~~L~l~~~-  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETL----LEL----------------------------------------GEIPTLKTLQVFGI-  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGG----GGG----------------------------------------GGCTTCCEEECTTS-
T ss_pred             cCCEEECCCCCCCChHHH----HHH----------------------------------------hcCCCCCEEeeeCC-
Confidence            9999999996 4553211    111                                        12678999999987 


Q ss_pred             cccCC-chhhhCcCCCCeeeccCCccCCC
Q 019924          217 FQGGI-PEVVGKLNLLKGLNISHNNLTGL  244 (334)
Q Consensus       217 l~~~~-p~~l~~l~~L~~L~Ls~N~l~~l  244 (334)
                      ++... +.....+++|   .+..++++++
T Consensus       236 ~~d~~l~~l~~~lp~L---~i~~~~ls~~  261 (284)
T d2astb2         236 VPDGTLQLLKEALPHL---QINCSHFTTI  261 (284)
T ss_dssp             SCTTCHHHHHHHSTTS---EESCCCSCCT
T ss_pred             CCHHHHHHHHHhCccc---cccCccCCCC
Confidence            44332 2223445554   4677777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.1e-13  Score=119.57  Aligned_cols=158  Identities=16%  Similarity=0.140  Sum_probs=91.6

Q ss_pred             CCccEEeCCCCcccc-----CCCccccCCCCCCEEEccCCcCCcCC----ChhhhcCCCCCEEEeecccCcccCCCCC--
Q 019924           63 CNLTSLNLNGNRLEG-----PLPPSLVNCHHLEVLNVGNNQINDNF----PNWLEILPELQVLILRSNRFWGPIGENT--  131 (334)
Q Consensus        63 ~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~~~~--  131 (334)
                      ..++.+++++|++..     ..+........++.+++++|.+....    ...+...+.++.+++++|.++......+  
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            445555555554421     12233445678999999999886532    2345567889999999998753211100  


Q ss_pred             -CCCCCCCccEEEecCCccccccchhhHHhH----HhhhhcCCcccccccccCCCCCCceeeEEEEEeccchh-------
Q 019924          132 -TIVPFPSLRIIDLSHNEFTGVLLTGYLDNF----KAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK-------  199 (334)
Q Consensus       132 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l----~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------  199 (334)
                       .......|+.+++++|.++...... +..+    ..|..++                      +..+.+..+       
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~~~~~-l~~~~~~~~~L~~L~----------------------Ls~N~i~~~g~~~l~~  362 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAACCSH-FSSVLAQNRFLLELQ----------------------ISNNRLEDAGVRELCQ  362 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHH-HHHHHHHCSSCCEEE----------------------CCSSBCHHHHHHHHHH
T ss_pred             cccccccccccccccccchhhhhhhh-cccccccccchhhhh----------------------eeeecccCcccchhhh
Confidence             0123457888999988876543222 1111    1122221                      111222211       


Q ss_pred             -hhhhhhheeEEEccCcccccC----CchhhhCcCCCCeeeccCCccCC
Q 019924          200 -MERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTG  243 (334)
Q Consensus       200 -~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  243 (334)
                       .....+.|++|+|++|.|++.    +++.+..+++|++|++++|+|++
T Consensus       363 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence             111245688999999998753    44556677899999999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.1e-10  Score=87.82  Aligned_cols=88  Identities=23%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             CcCccCCCCccEEeCCCCccccCC--CccccCCCCCCEEEccCCcCCcCCChhhhcCCCCCEEEeecccCcccCCCC---
Q 019924           56 PRKFVKSCNLTSLNLNGNRLEGPL--PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGEN---  130 (334)
Q Consensus        56 p~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~---  130 (334)
                      +..+..+++|++|++++|+|+...  +..+..+++|+.|++++|.++...+-.+.....|++|++++|++.......   
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            333445666777777777666331  233455666777777777766533323334445666666666664332221   


Q ss_pred             --CCCCCCCCccEEE
Q 019924          131 --TTIVPFPSLRIID  143 (334)
Q Consensus       131 --~~~~~l~~L~~L~  143 (334)
                        ..+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              0123456666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.1e-09  Score=84.72  Aligned_cols=15  Identities=47%  Similarity=0.804  Sum_probs=7.1

Q ss_pred             CCCccEEEecCCccc
Q 019924          136 FPSLRIIDLSHNEFT  150 (334)
Q Consensus       136 l~~L~~L~Ls~N~l~  150 (334)
                      +++|+.|++++|.++
T Consensus        90 l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          90 APNLKILNLSGNELK  104 (162)
T ss_dssp             STTCCCCCCTTSCCC
T ss_pred             CCcccccccccCccc
Confidence            444444444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.10  E-value=1.2e-06  Score=67.42  Aligned_cols=110  Identities=14%  Similarity=0.103  Sum_probs=70.4

Q ss_pred             CCCCCEEeCCCC-cCccc----cCcCccCCCCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcCCC----
Q 019924           38 NLTHKVLDMRMN-NFNGK----IPRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFP----  104 (334)
Q Consensus        38 n~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~----  104 (334)
                      ++.|++|+|+++ .++..    +...+...++|++|++++|.++..    +.+.+...+.|++|++++|.++....    
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            356677788763 45532    334566677788888888887632    33445566788888888888865322    


Q ss_pred             hhhhcCCCCCEEEeecccCccc-------CCCCCCCCCCCCccEEEecCCcc
Q 019924          105 NWLEILPELQVLILRSNRFWGP-------IGENTTIVPFPSLRIIDLSHNEF  149 (334)
Q Consensus       105 ~~l~~l~~L~~L~L~~N~l~~~-------~~~~~~~~~l~~L~~L~Ls~N~l  149 (334)
                      ..+...++|++|++++|.+...       +..  .+...++|+.|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~--~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHH--HHHhCCCccEeeCcCCCc
Confidence            2345667788888888765321       111  124467888898877654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=4.9e-07  Score=69.66  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=52.1

Q ss_pred             CCCCccEEeCCCC-ccccC----CCccccCCCCCCEEEccCCcCCcC----CChhhhcCCCCCEEEeecccCcccCCCCC
Q 019924           61 KSCNLTSLNLNGN-RLEGP----LPPSLVNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIGENT  131 (334)
Q Consensus        61 ~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  131 (334)
                      +.++|++|+|+++ .++..    +...+...++|++|++++|.++..    +...+...+.|++|++++|.++......+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4567788888764 45422    233456667778888887777532    22334456677777777777643211110


Q ss_pred             --CCCCCCCccEEEecCCccc
Q 019924          132 --TIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus       132 --~~~~l~~L~~L~Ls~N~l~  150 (334)
                        ++...++|+.|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence              2245566777777766554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.43  E-value=8.8e-06  Score=62.24  Aligned_cols=64  Identities=20%  Similarity=0.248  Sum_probs=33.7

Q ss_pred             cCCCCccEEeCCC-CccccC----CCccccCCCCCCEEEccCCcCCcCCC----hhhhcCCCCCEEEeecccC
Q 019924           60 VKSCNLTSLNLNG-NRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFP----NWLEILPELQVLILRSNRF  123 (334)
Q Consensus        60 ~~l~~L~~L~L~~-n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L~~L~L~~N~l  123 (334)
                      .+.++|++|++++ +.++..    +...+...++|++|++++|.++....    ..+...+.++.+++++|.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            4456677777765 344321    22334556666677777666654221    2233445555555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.36  E-value=3e-05  Score=59.12  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=74.0

Q ss_pred             CCCCCCEEeCCC-CcCcc----ccCcCccCCCCccEEeCCCCccccC----CCccccCCCCCCEEEccCCcCCcCC----
Q 019924           37 SNLTHKVLDMRM-NNFNG----KIPRKFVKSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNF----  103 (334)
Q Consensus        37 ~n~~L~~L~Ls~-N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~----  103 (334)
                      +++.|++|++++ +.++.    .+...+...++|++|++++|.++..    +...+...++++.+++++|.++...    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            346678888886 45652    2334566788899999999988643    3345566788999999998886532    


Q ss_pred             ChhhhcCCCCCEEEee--cccCcccCCCCC--CCCCCCCccEEEecCCccc
Q 019924          104 PNWLEILPELQVLILR--SNRFWGPIGENT--TIVPFPSLRIIDLSHNEFT  150 (334)
Q Consensus       104 ~~~l~~l~~L~~L~L~--~N~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~  150 (334)
                      ...+...++|+.++|+  +|.+.......+  .+...++|+.|+++.+...
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            2445677888876664  555532111111  1246788999999877653