Citrus Sinensis ID: 019930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MGMKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRMLAWNNETSAETRGTGGFLFNSSSLSQQAALAFRGPLQSSFTQSVRAWDDIPVGKTHEMQQSSVFGMPAGFNIPARIHGEDHHQHSNRPSSSSPNNSHR
Secondary Structure (PSIPRED)
cccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccEEEccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccEEEccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHccccccccccccccccccccccccccccccccccccccccEEcccEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGMKGTEGEIVQVEGGhivrstgrkdrhskvytskgprdrrvrlSAHTAIQFYdvqdrlgydrpsKAVDWLIKKAKSSIDklaelppwqpstsnnnaateaepnmgssemaiqeqsessgysFQIHRQlgdhnanndstfmspppldtdaIADTiksffptsttasainfqnypagiltrstnptedlglslhtafqdpglihgqsrgnashtasadqtpfagsapvgfdsSFQRMLAWnnetsaetrgtggflfnsssLSQQAALAFrgplqssftqsvrawddipvgkthemqqssvfgmpagfniparihgedhhqhsnrpsssspnnshr
Flexible Loop (DISEMBL)
mgmkgtegeivqvegghivrstgrkdrhskvytskgprdrrvrlsahtaiqfydvqdrlgydrPSKAVDWLIKKAKSSIDKlaelppwqpstsnNNAATEAEPNMGSSEMAIQEQSESSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRMLAWNNETSAETRGTGGFLFNSSSLSQQAALAFRGPLQSSFTQSVRAWDDIPVGKTHEMQQSSVFGMPAGFNIPARIHGEDHHqhsnrpsssspnnshr
Low Complexity Region (SEG)
MGMKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRMLAWNNETSAETRGTGGflfnssslsqqaalafRGPLQSSFTQSVRAWDDIPVGKTHEMQQSSVFGMPAGFNIPARIHGEDHHQhsnrpsssspnnshr
Disordered region (IsUnstruct)
******************************************RLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA***************************************************************************IADTIKSFFPTSTTASAINFQNYPAGILTRS******LGLSLHTAF***************************************MLAW************GFLF**********LAF*******FTQSVRAWDDIPV*****************F****************************
Disordered Region (DISOPRED)
*********************************SKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDK**************************************************************************************************************************************************************************GFLF***************************************************NI**************************
Disordered Region (DISEMBL)
MGMKGTEGEIVQVEGGHIVRS*******************RVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNA************************SFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNPTEDLGLSLHTAFQDPGLIHG************DQTPFAGSAPVGFDSSFQRMLAWNNETSAETRGTGGFLFNSSSLSQQAALAFRGPLQSSFTQSVRAWDDIPVGKTHEMQQSSVFGMPAGFNIPARIHG********************
Disordered Region (DISPRO)
*******GEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAEL**************************************************************TDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNPTEDLGLSLHTAFQDPGLIHGQ*********************VGFDSSFQRMLAWNNE**AETRGTGGFLFNSSSLSQQAALAFRGPLQSSFTQSVRAWDDIPVGKTHEMQQSSVFGMPAGFNIPARIH*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRMLAWNNETSAETRGTGGFLFNSSSLSQQAALAFRGPLQSSFTQSVRAWDDIPVGKTHEMQQSSVFGMPAGFNIPARIHGEDHHQHSNRPSSSSPNNSHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q8LPR5	420	Transcription factor TCP4	yes	no	0.979	0.778	0.435	1e-63
Q9MAH8	391	Transcription factor TCP3	no	no	0.937	0.800	0.436	3e-59
A2WM14	582	Transcription factor PCF5	N/A	no	0.901	0.517	0.415	4e-51
Q8LT07	458	Transcription factor PCF5	yes	no	0.904	0.659	0.413	4e-51
O82277	361	Transcription factor TCP1	no	no	0.5	0.462	0.516	1e-43
Q8LT05	457	Transcription factor PCF7	no	no	0.799	0.584	0.365	3e-29
A2WV68	457	Transcription factor PCF7	N/A	no	0.799	0.584	0.365	4e-29
Q10CE8	357	Transcription factor PCF6	no	no	0.206	0.193	0.710	3e-23
Q93V43	365	Transcription factor TCP2	no	no	0.203	0.186	0.720	4e-23
A2XMN1	358	Transcription factor PCF6	N/A	no	0.200	0.187	0.716	1e-22

>sp|Q8LPR5|TCP4_ARATH Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 173/397 (43%), Positives = 234/397 (58%), Gaps = 70/397 (17%)

Query: 5   GTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRP 64
           G  GEIV+V+GGHIVRSTGRKDRHSKV T+KGPRDRRVRLSAHTAIQFYDVQDRLG+DRP
Sbjct: 26  GGCGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRP 85

Query: 65  SKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEM---------AIQEQ 115
           SKAVDWLIKKAK+SID+LAELPPW P+ +   AA  A+P   +++            Q+Q
Sbjct: 86  SKAVDWLIKKAKTSIDELAELPPWNPADAIRLAAANAKPRRTTAKTQISPSPPPPQQQQQ 145

Query: 116 SESSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPT--STTASAIN---F 170
            +   +    +    +H +NN+S+F+ PP +D+D+IADTIKSFFP   S+T +  N    
Sbjct: 146 QQQLQFGVGFNGGGAEHPSNNESSFL-PPSMDSDSIADTIKSFFPVIGSSTEAPSNHNLM 204

Query: 171 QNY----PAGILTRSTNPTEDLGLSLHTAFQD--PGLIHGQSRGNASHTASADQTPFAGS 224
            NY    P  +L+R+ +  +DL LSL + F D  P L+H Q   + S +AS     +  S
Sbjct: 205 HNYHHQHPPDLLSRTNSQNQDLRLSLQS-FPDGPPSLLHHQHHHHTSASASEPTLFYGQS 263

Query: 225 APVGFDSS-----------FQRMLAWNN---ETSAETRGTGGFLF---NSSSLSQQAAL- 266
            P+GFD+S            QR++AWN+     + +T   GGFLF     S+ S Q  L 
Sbjct: 264 NPLGFDTSSWEQQSSEFGRIQRLVAWNSGGGGGATDTGNGGGFLFAPPTPSTTSFQPVLG 323

Query: 267 ------AFRGPLQSSFTQSVRAW------------DDI--PVGKTHEMQQSSVFGM---- 302
                 + RGPLQSS++  +RAW            DD+         + QS++ G+    
Sbjct: 324 QSQQLYSQRGPLQSSYSPMIRAWFDPHHHHQSISTDDLNHHHHLPPPVHQSAIPGIGFAS 383

Query: 303 ---PAGFNIPARIHGEDHHQH---SNRPSSSSPNNSH 333
               +GF IPAR  G++  QH   +++PSS+S  + H
Sbjct: 384 GEFSSGFRIPARFQGQEEEQHDGLTHKPSSASSISRH 420

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Required during early steps of embryogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH8|TCP3_ARATH Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=2 SV=1

 Score =  229 bits (583), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 165/378 (43%), Positives = 218/378 (57%), Gaps = 65/378 (17%)

Query: 5   GTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRP 64
           G  GEIV+V+GGHIVRSTGRKDRHSKV T+KGPRDRRVRLSA TAIQFYDVQDRLG+DRP
Sbjct: 30  GGCGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRP 89

Query: 65  SKAVDWLIKKAKSSIDKLAELPPWQPSTS---NNNAATEAEPNMGSSEMAIQEQSESSGY 121
           SKAVDWLI KAKS+ID LA+LPPW P+ +   +  AA  A+P    + ++          
Sbjct: 90  SKAVDWLITKAKSAIDDLAQLPPWNPADTLRQHAAAAANAKPRKTKTLISPPPPQPEE-- 147

Query: 122 SFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRS 181
               H ++G+   +N+S+F+ P  +D+D+IADTIKSFFP ++T  + + Q    G    +
Sbjct: 148 --TEHHRIGEEE-DNESSFL-PASMDSDSIADTIKSFFPVASTQQSYHHQPPSRG----N 199

Query: 182 TNPTEDLGLSLHTAFQ---------DPGLIHGQSRGNA---SHTASADQTPFAGSAPVGF 229
           T   + L LSL + FQ         +P L  GQS       S TAS +Q+    S   G 
Sbjct: 200 TQNQDLLRLSLQS-FQNGPPFPNQTEPALFSGQSNNQLAFDSSTASWEQS--HQSPEFG- 255

Query: 230 DSSFQRMLAWNNETSAETRG-TGGFLFNSSS-----LSQQAALAFRGPLQSSFTQSVRAW 283
               QR+++WNN  +AE+ G TGGF+F S S      SQ   L+ RGPLQS  T  +RAW
Sbjct: 256 --KIQRLVSWNNVGAAESAGSTGGFVFASPSSLHPVYSQSQLLSQRGPLQSINTPMIRAW 313

Query: 284 ----------------DDIPVGKTHE----MQQSSVFGMP-------AGFNIPARIHGE- 315
                           DD+     +     + QS++ G+        +GF IPAR  GE 
Sbjct: 314 FDPHHHHHHHQQSMTTDDLHHHHPYHIPPGIHQSAIPGIAFASSGEFSGFRIPARFQGEQ 373

Query: 316 DHHQHSNRPSSSSPNNSH 333
           + H   N+PSS+S ++ H
Sbjct: 374 EEHGGDNKPSSASSDSRH 391

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).

Arabidopsis thaliana (taxid: 3702)

>sp|A2WM14|PCF5_ORYSI Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=4 SV=1

 Score =  202 bits (513), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 149/359 (41%), Positives = 181/359 (50%), Gaps = 58/359 (16%)

Query: 9   EIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV 68
           EIV V+GGHIVRSTGRKDRHSKV T++GPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV
Sbjct: 198 EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV 257

Query: 69  DWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQI-HR 127
           DWLIK AK +IDKL  LP WQP+     A   A P   S+     E S+    +  + H 
Sbjct: 258 DWLIKNAKDAIDKLDVLPAWQPTAGGAGAGNAAAPPSSSTHPDSAENSDDQAQAITVAHT 317

Query: 128 QLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASA-------------INFQNYP 174
                   +  T   PP LD+DAIADTIKSFFP   TA               + FQ+Y 
Sbjct: 318 AFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPMGGTAGGEASSSTTAAQSSAMGFQSYT 377

Query: 175 AGILTRSTNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQTP---FAGSAPVGF-- 229
             +L+R+ + +++L LSL +   DP   H Q R           T    F+G+A   F  
Sbjct: 378 PDLLSRTGSQSQELRLSLQS-LPDPMFHHQQHRHGGGGGGGNGTTQQALFSGAANYSFGG 436

Query: 230 --------DSSFQRMLAWNNETSAETRGTGGFLFNSSSLS------------QQAALAF- 268
                    +  QRML WN            +LFN S  +             Q+   F 
Sbjct: 437 GAMWATEQQAQNQRMLPWNVPDPGGGG-GAAYLFNVSQQAAHMQAAAAALGGHQSQFFFQ 495

Query: 269 RGPLQSSFTQSVRAWDDIPVGKTHEMQQ---------SSVFGMPA------GFNIPARI 312
           RGPLQSS   S R W +  V   ++M           S+  G  A      GF +PARI
Sbjct: 496 RGPLQSSNQPSERGWPET-VEADNQMSHHQGGLSPSVSAAIGFAAPGIGFSGFRLPARI 553

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8LT07|PCF5_ORYSJ Transcription factor PCF5 OS=Oryza sativa subsp. japonica GN=PCF5 PE=2 SV=1

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 149/360 (41%), Positives = 180/360 (50%), Gaps = 58/360 (16%)

Query: 9   EIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV 68
           EIV V+GGHIVRSTGRKDRHSKV T++GPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV
Sbjct: 74  EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV 133

Query: 69  DWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQI-HR 127
           DWLIK AK +IDKL  LP WQP+     A   A P   S+     E S+    +  + H 
Sbjct: 134 DWLIKNAKDAIDKLDVLPAWQPTAGGAGAGNAAAPPSSSTHPDSAENSDDQAQAITVAHT 193

Query: 128 QLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASA-------------INFQNYP 174
                   +  T   PP LD+DAIADTIKSFFP   TA               + FQ+Y 
Sbjct: 194 AFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPMGGTAGGEASSSTTAAQSSAMGFQSYT 253

Query: 175 AGILTRSTNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQTP---FAGSAPVGF-- 229
             +L+R+ + +++L LSL +   DP   H Q R           T    F+G+A   F  
Sbjct: 254 PDLLSRTGSQSQELRLSLQS-LPDPMFHHQQHRHGGGGGGGNGTTQQALFSGAANYSFGG 312

Query: 230 --------DSSFQRMLAWNNETSAETRGTGGFLFNSSSL------------SQQAALAF- 268
                    +  QRML WN            +LFN S                Q+   F 
Sbjct: 313 GAMWATEQQAQNQRMLPWNVPDPGGGG-GAAYLFNVSQQAAHMQAAAAALGGHQSQFFFQ 371

Query: 269 RGPLQSSFTQSVRAWDDIPVGKTHEMQQ---------SSVFGMPA------GFNIPARIH 313
           RGPLQSS   S R W +  V   ++M           S+  G  A      GF +PARI 
Sbjct: 372 RGPLQSSNQPSERGWPET-VEADNQMSHHQGGLSPSVSAAIGFAAPGIGFSGFRLPARIQ 430

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82277|TCP10_ARATH Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/211 (51%), Positives = 129/211 (61%), Gaps = 44/211 (20%)

Query: 1   MGMKGTE-----GEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDV 55
           MG+KG       GEIV+V+GGHI+R+TGRKDRHSKV+TSKGPRDRRVRLSAHTAIQFYDV
Sbjct: 1   MGLKGYSVGEGGGEIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDV 60

Query: 56  QDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQ 115
           QDRLGYDRPSKAVDWLIKKAK++IDKL EL             T  EP        +  +
Sbjct: 61  QDRLGYDRPSKAVDWLIKKAKTAIDKL-EL------GETTTTTTRQEP--------VNTK 105

Query: 116 SESSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPT-----STTASAINF 170
            ES    FQ          NND T      LD +   D +K+FFP          + INF
Sbjct: 106 PESPTLVFQ--------RENNDQTQFVAANLDPE---DAMKTFFPATTTTNGGGGTNINF 154

Query: 171 QNYP----AGILTRSTNP----TEDLGLSLH 193
           QNYP      +++R+T P    ++DLGLSLH
Sbjct: 155 QNYPHQDDNNMVSRTTTPPPNLSQDLGLSLH 185

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LT05|PCF7_ORYSJ Transcription factor PCF7 OS=Oryza sativa subsp. japonica GN=PCF7 PE=2 SV=2

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 157/315 (49%), Gaps = 48/315 (15%)

Query: 16  GHIVRST-GRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKK 74
           G IVRS  GRKDRHSKV T++G RDRRVRL+AHTAI+FYDVQDRLGYDRPSKAVDWL++ 
Sbjct: 131 GRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRN 190

Query: 75  AKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQIHRQLGDHNA 134
           AK++ID   ELP    +     AA+  +P     E   Q  S S G+       +    +
Sbjct: 191 AKAAID---ELPDRAEAPPPPAAASTEQP-----EATEQATSTSYGFGNTTGGTMTSAAS 242

Query: 135 NNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAI------NFQNYPAGILTRSTN--PTE 186
               +F+ P  L  D ++D++KS FP+S+TAS         ++  P  +L+R+T+    +
Sbjct: 243 AAAGSFL-PHSLGADRVSDSVKSLFPSSSTASGAASAGHDEYRGSPPDLLSRTTSNQQPQ 301

Query: 187 DLGLSL----HTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRMLAWN-- 240
           +L L+L    H  F              SH +S      + +   G+    QRM AW+  
Sbjct: 302 ELCLTLQSNQHQIF--------------SHVSSNHHGMISSAGVPGWPDHSQRMQAWHAP 347

Query: 241 ---NETSAETRGTGGFLFNSSS---LSQQAALAFRGPLQSSFT--QSVRAW-DDIPVGKT 291
                         G++F   S   L Q    +   PLQSS     S RAW D + V   
Sbjct: 348 ENSTGDGRGGGNGDGYMFAMPSRQGLDQSQLFSHGEPLQSSGRGWASARAWLDPLAVAAI 407

Query: 292 HEMQQSSVFGMPAGF 306
           H  Q S++     GF
Sbjct: 408 HH-QPSTMAAGQVGF 421

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WV68|PCF7_ORYSI Transcription factor PCF7 OS=Oryza sativa subsp. indica GN=PCF7 PE=4 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 157/315 (49%), Gaps = 48/315 (15%)

Query: 16  GHIVRST-GRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKK 74
           G IVRS  GRKDRHSKV T++G RDRRVRL+AHTAI+FYDVQDRLGYDRPSKAVDWL++ 
Sbjct: 131 GRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRN 190

Query: 75  AKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQIHRQLGDHNA 134
           AK++ID   ELP    +     AA+  +P     E   Q  S S G+       +    +
Sbjct: 191 AKAAID---ELPDRAEAPPPPAAASTEQP-----EGTEQANSTSYGFGNTTGGTMTSAAS 242

Query: 135 NNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAI------NFQNYPAGILTRSTN--PTE 186
               +F+ P  L  D ++D++KS FP+S+TAS         ++  P  +L+R+T+    +
Sbjct: 243 AAAGSFL-PHSLGADRVSDSVKSLFPSSSTASGAASAGHDEYRGSPPDLLSRTTSNQQPQ 301

Query: 187 DLGLSL----HTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRMLAWN-- 240
           +L L+L    H  F              SH +S      + +   G+    QRM AW+  
Sbjct: 302 ELCLTLQSNQHQIF--------------SHVSSNHHGMISSAGVPGWPDHSQRMQAWHAP 347

Query: 241 ---NETSAETRGTGGFLFNSSS---LSQQAALAFRGPLQSSFT--QSVRAW-DDIPVGKT 291
                         G++F   S   L Q    +   PLQSS     S RAW D + V   
Sbjct: 348 ENSTGDGRGGGNGDGYMFAMPSRQGLDQSQLFSHGEPLQSSGRGWASARAWLDPLAVAAI 407

Query: 292 HEMQQSSVFGMPAGF 306
           H  Q S++     GF
Sbjct: 408 HH-QPSTMAAGQVGF 421

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10CE8|PCF6_ORYSJ Transcription factor PCF6 OS=Oryza sativa subsp. japonica GN=PCF6 PE=2 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 57/69 (82%)

Query: 19  VRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSS 78
           VR+TG KDRHSKVYT+KG RDRRVRLS  TAIQFYD+QDRLG+D+PSKA++WLI  A  +
Sbjct: 47  VRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPA 106

Query: 79  IDKLAELPP 87
           ID L  L P
Sbjct: 107 IDTLPSLDP 115

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93V43|TCP2_ARATH Transcription factor TCP2 OS=Arabidopsis thaliana GN=TCP2 PE=2 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%)

Query: 18  IVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKS 77
           + R++G KDRHSKV TSKGPRDRRVRLS  TA+QFYD+QDRLGYD+PSKAV+WLIK A+ 
Sbjct: 36  VSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAED 95

Query: 78  SIDKLAEL 85
           SI +L  L
Sbjct: 96  SISELPSL 103

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).

Arabidopsis thaliana (taxid: 3702)

>sp|A2XMN1|PCF6_ORYSI Transcription factor PCF6 OS=Oryza sativa subsp. indica GN=PCF6 PE=4 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 56/67 (83%)

Query: 19  VRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSS 78
           VR+TG KDRHSKVYT+KG RDRRVRLS  TAIQFYD+QDRLG+D+PSKA++WLI  A  +
Sbjct: 47  VRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPA 106

Query: 79  IDKLAEL 85
           ID L  L
Sbjct: 107 IDTLPSL 113

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
255568329	349	transcription factor, putative [Ricinus	0.979	0.936	0.644	1e-116
224135825	345	predicted protein [Populus trichocarpa]	0.955	0.924	0.622	1e-111
224145265	346	predicted protein [Populus trichocarpa]	0.925	0.893	0.647	1e-111
356549866	344	PREDICTED: transcription factor TCP4-lik	0.970	0.941	0.614	1e-106
356543886	343	PREDICTED: transcription factor TCP4-lik	0.919	0.895	0.598	9e-99
255568327	409	transcription factor, putative [Ricinus	0.946	0.772	0.532	4e-91
225446543	329	PREDICTED: transcription factor TCP4 [Vi	0.853	0.866	0.543	7e-83
358344020	329	Transcription factor PCF5 [Medicago trun	0.886	0.899	0.510	1e-77
357474541	335	Transcription factor PCF5 [Medicago trun	0.880	0.877	0.5	8e-73
259130061	426	TCP4 [Citrus trifoliata]	0.976	0.765	0.461	1e-72

>gi|255568329|ref|XP_002525139.1| transcription factor, putative [Ricinus communis] gi|223535598|gb|EEF37266.1| transcription factor, putative [Ricinus communis]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/354 (64%), Positives = 274/354 (77%), Gaps = 27/354 (7%)

Query: 3   MKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYD 62
           MKG+ GEIVQV+GGHIVRSTGRKDRHSKVYT+KGPRDRRVRLSAHTAIQFYDVQDRLGYD
Sbjct: 1   MKGSGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYD 60

Query: 63  RPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNM-GSSEMAIQEQSESSGY 121
           RPSKAVDWLIKKAKS+IDKLAELPPW P+ ++ N A EA+ N  G+SEMAI EQSESSGY
Sbjct: 61  RPSKAVDWLIKKAKSAIDKLAELPPWHPTANDTNVAMEADHNAGGTSEMAIGEQSESSGY 120

Query: 122 SFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRS 181
           SFQ+HRQLG+ N +NDS+FM+ P +D DAI DT+KS FPTS+T S +NFQ+YP+ I++R+
Sbjct: 121 SFQLHRQLGESNPSNDSSFMT-PTIDPDAIPDTMKSLFPTSSTNSTMNFQSYPSDIISRT 179

Query: 182 TNPTEDLGLSLHTAFQDPGLIHGQS-RGNASHTASADQTPFAGSAPVGFDSSFQRMLAW- 239
           TN TEDLGLSLH+ FQD GLIHGQS + +  HTAS +Q  FA S    ++++FQRM+ W 
Sbjct: 180 TNHTEDLGLSLHS-FQDQGLIHGQSAQADTRHTASNNQNLFASSP---YEANFQRMVGWS 235

Query: 240 NNETSAETRGTGGFLFNSSSLSQQAAL-----AF--RGPLQSSFTQSVRAWDDIPVG--- 289
           N+ TS + RG GGF FN   ++ Q AL     AF  RG LQSSF QS+RAW+D+ +    
Sbjct: 236 NSSTSTDNRGGGGFSFNQPPMTTQQALLGQDSAFSQRGTLQSSFAQSIRAWNDLNMASSN 295

Query: 290 --KTHEMQQSSVFGMP------AGFNIPARIHGEDHHQ-HSNRPSSSSPNNSHR 334
             +  E+ QS +FG        AGFNIPARIHGE+ H   S+RPSSSSPN+ HR
Sbjct: 296 HHRPQEIHQSFIFGSRFAPEGLAGFNIPARIHGEEEHSVVSDRPSSSSPNSQHR 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135825|ref|XP_002327313.1| predicted protein [Populus trichocarpa] gi|222835683|gb|EEE74118.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/342 (62%), Positives = 263/342 (76%), Gaps = 23/342 (6%)

Query: 8   GEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 67
           GEI+QV+GGHIVRSTGRKDRHSKVYT+KGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA
Sbjct: 5   GEIIQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 64

Query: 68  VDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQIHR 127
           VDWLIKKAK+SID+LAELPPWQP  +N NA  E   N GSSEMAI E+ ESSGYSFQ+H 
Sbjct: 65  VDWLIKKAKNSIDRLAELPPWQPPANNINANLEENQNAGSSEMAIAEEPESSGYSFQLHG 124

Query: 128 QLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNPTED 187
           QL DHN +N S+F++ P +D D I DT++SFFPTS+T S++NFQ+YP  +++R+ N TED
Sbjct: 125 QLTDHNPSNGSSFLA-PTIDPDTIPDTMRSFFPTSSTNSSMNFQSYPT-VISRTANHTED 182

Query: 188 LGLSLHTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRMLAWNNETSAET 247
           LGLSLH+ FQD  L+H QS+ + +H  S DQT F GSAPVGFD++FQRM+AW+N+T+A+ 
Sbjct: 183 LGLSLHS-FQDQVLLHEQSQADTTHAPSTDQTLFEGSAPVGFDTNFQRMMAWSNDTNADN 241

Query: 248 RGTGGFLFN-------SSSLSQQAALAFRGPLQSSFTQSVRAWDDIPVG-----KTHEMQ 295
           R  GGF FN        + L+Q +A + RG LQSSF  S+RAW+D+ +      +T E+ 
Sbjct: 242 RVAGGFAFNPPPLTPHQAMLAQGSAFSQRGTLQSSFPISIRAWNDLHMASTDHHRTQELH 301

Query: 296 QSSVFGMP------AGFNIPARIHGEDHHQ-HSNRPSSSSPN 330
           QS +FG        AGF+IPA+IHGE+ H   S+RP  SSPN
Sbjct: 302 QSLIFGSRFASEGLAGFSIPAQIHGENEHNVVSDRP-PSSPN 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145265|ref|XP_002325583.1| predicted protein [Populus trichocarpa] gi|222862458|gb|EEE99964.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/335 (64%), Positives = 261/335 (77%), Gaps = 26/335 (7%)

Query: 1   MGMKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLG 60
           MGMK T GEI+QV+GGHIVRSTGRKDRHSKVYT+KGPRDRRVRLSAHTAIQFYDVQDRLG
Sbjct: 1   MGMKSTAGEIIQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLG 60

Query: 61  YDRPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSG 120
           YDRPSKAVDWLIKKAKSSIDKLAELPPWQP+ +N NA  EA  N GSSEM I E+ ESSG
Sbjct: 61  YDRPSKAVDWLIKKAKSSIDKLAELPPWQPTANNANANLEANQNAGSSEMTIAEEPESSG 120

Query: 121 YSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTR 180
           Y+FQ+HRQL DHN +NDS+F++ P +D DA    +KSFFPTS+T S++NFQ+YP  +++R
Sbjct: 121 YTFQLHRQLTDHNPSNDSSFLA-PTIDPDA----MKSFFPTSSTNSSMNFQSYPT-VISR 174

Query: 181 STNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASA-DQTPFAGSAPVGFDSSFQRMLAW 239
           +TN TEDLGLSLH +FQD GL+HGQS+ + +HT S  DQT F GSA VGFD +F RMLAW
Sbjct: 175 TTNHTEDLGLSLH-SFQDQGLLHGQSQADTTHTPSTDDQTLFEGSATVGFDVNFHRMLAW 233

Query: 240 NNETSAETRGTGGFLFN-------SSSLSQQAALAFRGPLQSSFTQSVRAWDDIPVG--- 289
           +N+T+AE R  GGF FN        + L+Q +A + RGPLQSSF  S+R+W+D+ +    
Sbjct: 234 SNDTNAENRVAGGFTFNPPPLTPHQAMLAQASAFSQRGPLQSSFPHSIRSWNDLHMASTD 293

Query: 290 --KTHEMQQSSVFGMP------AGFNIPARIHGED 316
             +T E  QSS+FG        +GF+IPARIHG D
Sbjct: 294 HHRTQEFHQSSIFGSRFVSDGLSGFSIPARIHGGD 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549866|ref|XP_003543311.1| PREDICTED: transcription factor TCP4-like [Glycine max]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/353 (61%), Positives = 265/353 (75%), Gaps = 29/353 (8%)

Query: 1   MGMKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLG 60
           MGMK T GEIVQV+GGHIVRSTGRKDRHSKVYT+KGPRDRRVRLSAHTAIQFYDVQDRLG
Sbjct: 1   MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLG 60

Query: 61  YDRPSKAVDWLIKKAKSSIDKLAELPPWQ--PSTSNNNAATEAEPNMGSSEMAIQEQSES 118
           YDRPSKAVDWLIKKAK++IDKLAELPPW   P+T+  +A      N GSS+MAI EQSES
Sbjct: 61  YDRPSKAVDWLIKKAKNAIDKLAELPPWHPNPNTTAADAENNNNNNAGSSDMAIAEQSES 120

Query: 119 SGYSFQIHRQLG-DHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGI 177
           SGY+FQ+ RQLG DH+ ++ S F+ P P+DTDAIA     FFPT+T  S+INFQ YP  I
Sbjct: 121 SGYNFQLQRQLGEDHDNHHHSAFI-PSPIDTDAIA-----FFPTTTATSSINFQTYPPDI 174

Query: 178 LTRSTNPTEDLGLSLHTAFQDPGLI-HGQSRGNASHTASADQTPFAGSAPVGFDSSFQRM 236
           ++R+ N TEDLGLSLH+ FQDPGLI HGQS+  A+ T S DQT F+GS  VGF++++ R+
Sbjct: 175 ISRTNNSTEDLGLSLHS-FQDPGLIHHGQSQAGANQTPSNDQTLFSGSTQVGFEANYPRI 233

Query: 237 LAWNNETSAETRGTGGFLFNSSS--LSQQAALAF--RGPLQSSFTQSVRAWDDIPVGKT- 291
           + WN++ S +   T GF+ NS S  L Q  + A+  RG LQSSF+ S+R W DIP+  + 
Sbjct: 234 VTWNSDASTDMNRT-GFMVNSPSALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSE 292

Query: 292 --HEMQQSSVFG-------MPAGFNIPARIHGED--HHQHSNRPSSSSPNNSH 333
             H+ QQ+S+FG       +P GF IPARI GED  H   ++RPSS+SPN+ H
Sbjct: 293 HHHKSQQASIFGSRFLSDALP-GFCIPARIQGEDEGHGVGNDRPSSASPNSHH 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543886|ref|XP_003540389.1| PREDICTED: transcription factor TCP4-like [Glycine max]

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 201/336 (59%), Positives = 249/336 (74%), Gaps = 29/336 (8%)

Query: 1   MGMKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLG 60
           MGMK T GEIVQV+GGHIVRSTGRKDRHSKVYT+KGPRDRRVRLSAHTAI+FYDVQDRLG
Sbjct: 1   MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIEFYDVQDRLG 60

Query: 61  YDRPSKAVDWLIKKAKSSIDKLAELPPWQPS--TSNNNAATEAEPNMGSSEMAI-QEQSE 117
           YDRPSKAVDWLIKKAK++IDKL ELPPW P+  T+ +        N GSS+MAI  EQSE
Sbjct: 61  YDRPSKAVDWLIKKAKNAIDKLGELPPWHPTPNTAADAENNNNNNNAGSSDMAIAAEQSE 120

Query: 118 SSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGI 177
           SSGY+FQ+ RQLG+ + N+ S F+ P P+DTDAIA     FFPT+T  S+INFQ YP  I
Sbjct: 121 SSGYNFQLQRQLGEDHDNHHSAFI-PSPIDTDAIA-----FFPTTTATSSINFQTYPPNI 174

Query: 178 LTRSTNPTEDLGLSLHTAFQDPGLIHGQSR--GNASHTASADQTPFAGSAPVGFDSSFQR 235
           ++R+ N TEDLGLSLH+ FQDPGLIHGQ++   N + T S DQ+ F+GS  VGF++++ R
Sbjct: 175 ISRTNNSTEDLGLSLHS-FQDPGLIHGQTQAGANQTQTPSNDQSLFSGSTQVGFEANYPR 233

Query: 236 MLAWNNETSAETRGTGGFLFNSSSLSQQ---AALAFRGPLQSSFTQSVRAWDDIPVG--- 289
           ++ WN++ S +   T GF+ NS +L  Q   AA + RG LQSSF+ S+R W +IP+    
Sbjct: 234 IVTWNSDASIDMNRT-GFMVNSPALLGQGGSAAFSQRGTLQSSFSPSLRPWSEIPMASSE 292

Query: 290 --KTHEMQQSSVFG-------MPAGFNIPARIHGED 316
             K+  +QQ+S+FG       +P GF IPARI GED
Sbjct: 293 HHKSQPIQQASIFGSRFLSDALP-GFCIPARIQGED 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568327|ref|XP_002525138.1| transcription factor, putative [Ricinus communis] gi|223535597|gb|EEF37265.1| transcription factor, putative [Ricinus communis]

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 187/351 (53%), Positives = 244/351 (69%), Gaps = 35/351 (9%)

Query: 2   GMKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGY 61
           GMKG  GEIVQ +GGHI+RSTGRKDRHSKV T+KGPRDRRVRLSAHTAI FYDVQDRLGY
Sbjct: 75  GMKGAVGEIVQAQGGHILRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIDFYDVQDRLGY 134

Query: 62  DRPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGY 121
           DRPSKAVDWLIKKAKS+IDKL ELPPW P+ ++ N A E + N+  +EM I EQ ESSGY
Sbjct: 135 DRPSKAVDWLIKKAKSAIDKLDELPPWHPTANDTNEAMETDQNVEPTEMPIGEQLESSGY 194

Query: 122 SFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRS 181
           +FQ H+       +N S+F+S P +D DA+ DT+KS FPTS+  S+++FQ+YP  I++R+
Sbjct: 195 TFQPHK-------SNYSSFVS-PTIDPDALNDTMKSLFPTSSANSSMHFQSYPPDIISRT 246

Query: 182 TNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRMLAWNN 241
            N TEDLGLSLH+ FQ+  LIHGQS+   SHT S +      SA V ++ +   ++ W+N
Sbjct: 247 INHTEDLGLSLHS-FQNQSLIHGQSQAGTSHTPSDE----LASAQVEYEPN---LIGWSN 298

Query: 242 ETSAETRGTGGFLFN-------SSSLSQQAALAFRGPLQSSFTQSVRAWDDIPVG----- 289
            TSA +R  G F FN        +  SQ +AL+ RG LQS+F+QS+  W+D+ +      
Sbjct: 299 NTSARSRAGGAFSFNPLPIPLQQAMFSQNSALSQRGSLQSNFSQSMHTWNDLTMSSPDHH 358

Query: 290 KTHEMQQSSVFG------MPAGFNIPARIHGEDHHQH-SNRPSSSSPNNSH 333
           +T  + Q  +FG        AG +IPA+IHG++  +  S+ PSS+SPN+ H
Sbjct: 359 RTQVIHQPFIFGSRFAPEALAGHSIPAQIHGQEEQRFVSDMPSSASPNSQH 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446543|ref|XP_002279328.1| PREDICTED: transcription factor TCP4 [Vitis vinifera]

 Score =  313 bits (802), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 181/333 (54%), Positives = 225/333 (67%), Gaps = 48/333 (14%)

Query: 8   GEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 67
           GEIVQV+GGHIVRSTGRKDRHSKVYT+KGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA
Sbjct: 7   GEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 66

Query: 68  VDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSF---Q 124
           VDWLIKKAKSSIDKLAELPPW P   + NA+       G+S++ + +QS+ S Y F    
Sbjct: 67  VDWLIKKAKSSIDKLAELPPWHPIALDPNASA------GTSDIGMAQQSQESNYVFPPLG 120

Query: 125 IHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNP 184
               +G  N +NDS F++ PPLD+D+IADT+KSFFPTS+  S+IN+QNYP      S + 
Sbjct: 121 GGGGVGGENPSNDSAFIA-PPLDSDSIADTMKSFFPTSSGTSSINYQNYP----PDSNHH 175

Query: 185 TEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRMLAWNNETS 244
            EDL LSLH+ FQDP               S  +  FA +A VG++++FQRM++W     
Sbjct: 176 NEDLCLSLHS-FQDP------------DAESNHKNLFASAAQVGYETNFQRMVSWGGGGG 222

Query: 245 -AETRGTGGFLFNSSS-----------LSQQAALAFRGPLQSSFTQSVRAWDDIPVGKTH 292
            +E+RG  GF+FNS             LSQ +  + RGPLQSSF  +VRAW+++P+  + 
Sbjct: 223 DSESRGGFGFMFNSPPMPMPQPQPPTLLSQGSEFSQRGPLQSSFAPAVRAWNELPIA-SG 281

Query: 293 EMQQSSVF-------GMPAGFNIPARIHGEDHH 318
            M QSS+        G+P GF IPARI GE+ H
Sbjct: 282 AMHQSSLSDGRFVPNGVP-GFRIPARIQGEEEH 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344020|ref|XP_003636092.1| Transcription factor PCF5 [Medicago truncatula] gi|355502027|gb|AES83230.1| Transcription factor PCF5 [Medicago truncatula]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/349 (51%), Positives = 223/349 (63%), Gaps = 53/349 (15%)

Query: 1   MGMKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLG 60
           MGMK T GEIVQV+GGHIVR+TGRKDRHSKVYT+KGPRDRRVRLSAHTAIQFYDVQDRLG
Sbjct: 1   MGMKSTGGEIVQVQGGHIVRATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLG 60

Query: 61  YDRPSKAVDWLIKKAKSSIDKLAELPPWQP----STSNNNAATEAEPNMGSSEMAI-QEQ 115
           YDRPSKAVDWLIKKAKS+IDKL +LPPW P    +             + ++EM I  EQ
Sbjct: 61  YDRPSKAVDWLIKKAKSAIDKLDQLPPWNPIPNATEELQEEENNNNNAVETNEMVIAAEQ 120

Query: 116 SESSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPA 175
           SESSGY+     Q  +H+ +N S F+    +D DAIA     FFPT++   ++NFQ+Y +
Sbjct: 121 SESSGYNL----QQNNHHNHNHSGFIQ-STIDNDAIA-----FFPTTSVGESMNFQSYSS 170

Query: 176 GILTRSTNPTEDLGLSLHTAFQDPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQR 235
            I++R+ N T+DLGLSLH+ FQD             ++AS DQT F+GS PVGFD+++ R
Sbjct: 171 DIISRTNNSTQDLGLSLHS-FQD-------------NSASNDQTLFSGSNPVGFDANYNR 216

Query: 236 MLAWNNETSAETRGTGGFLFNSSSLSQQAAL--AFRGPLQSSFTQSVRAWDDIPVGKT-- 291
           ++ WN      T    GF+ NS +   Q +   A RG LQSSF+ S+R W+DIP+     
Sbjct: 217 IVNWNTADMNRT----GFMVNSPAFLGQGSTFSAHRGTLQSSFSPSLRPWNDIPIADASV 272

Query: 292 --------HEMQQSSVFG------MPAGFNIPARIHGED--HHQHSNRP 324
                    ++ Q+S+FG         GF IPARI GED  H   S RP
Sbjct: 273 DHHNHKSQQQIHQASIFGSRFLSDALTGFCIPARIQGEDESHGVGSERP 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474541|ref|XP_003607555.1| Transcription factor PCF5 [Medicago truncatula] gi|358347183|ref|XP_003637639.1| Transcription factor PCF5 [Medicago truncatula] gi|355503574|gb|AES84777.1| Transcription factor PCF5 [Medicago truncatula] gi|355508610|gb|AES89752.1| Transcription factor PCF5 [Medicago truncatula]

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 167/334 (50%), Positives = 215/334 (64%), Gaps = 40/334 (11%)

Query: 3   MKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYD 62
           M+ T GEIVQVEGGHIVR+TG+KDRHSKVYTSKGPRDRRVRLSAHTAI+FYDVQDRLGYD
Sbjct: 1   MRSTGGEIVQVEGGHIVRATGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYD 60

Query: 63  RPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPN---MGSSEMAIQEQSESS 119
           RPSKAVDWLIKKAKSSIDKLAELPPW P + N       E       SS M + E SES+
Sbjct: 61  RPSKAVDWLIKKAKSSIDKLAELPPWHPISENQTLKPLEEVQNVVANSSGMVVGETSESN 120

Query: 120 GYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFP-TSTTASAINFQNYPAGIL 178
           GYSF + RQL ++  N++S F+SP  ++TD I      FFP TS+T+S+INFQNYP+   
Sbjct: 121 GYSFHLLRQLSENQGNHNSAFISPHNVETDPIP-----FFPTTSSTSSSINFQNYPS--- 172

Query: 179 TRSTNPTEDLGLSLHTAFQD-PGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRML 237
                  E+LGLSLH +FQD  G I  QS+    +  ++++          F++ + R+ 
Sbjct: 173 -------ENLGLSLH-SFQDHNGFIPWQSQQVCENHETSNEN--QNQNQTFFENQYHRIE 222

Query: 238 AWNNETSAETRGTGGFLFNSSSLSQQAALAFRGP---LQSSFTQSVRAWDDIPVG----- 289
            WNNET+ +     GF+ NS S   Q + +   P   LQS+F+ SVR W++IP+      
Sbjct: 223 NWNNETTNDYIKKVGFMVNSQSFLGQGSGSEYSPNETLQSNFSHSVRTWNEIPMDSSSEV 282

Query: 290 ---KTHEMQQSSVFGMP------AGFNIPARIHG 314
              ++ ++ Q+S+FG        AGF IP  + G
Sbjct: 283 HHHRSQQVHQASIFGSRFVSDGLAGFCIPDTVQG 316

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259130061|gb|ACV95483.1| TCP4 [Citrus trifoliata]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 194/420 (46%), Positives = 238/420 (56%), Gaps = 94/420 (22%)

Query: 1   MGMKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLG 60
           +GM+ T GEIV+V+GGHIVRSTGRKDRHSKV T+KGPRDRRVRLSAHTAIQFYDVQDRLG
Sbjct: 14  LGMRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLG 73

Query: 61  YDRPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSES-- 118
           YDRPSKAVDWLIKKAK++ID+LAELPPW P T  N  A+ A+     S  A  +Q+E+  
Sbjct: 74  YDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAK-----SRNAHHQQNEANE 128

Query: 119 --------SGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFP----TSTTAS 166
                   S    Q    +   N N  S+F+ PP LD+D+IADTIKSFFP    T TTAS
Sbjct: 129 ERNFPYPGSSNDVQNLPMVETPNQNQSSSFL-PPALDSDSIADTIKSFFPMGASTDTTAS 187

Query: 167 AINFQNYPAGILTRSTNP-TEDLGLSLHTAFQDPGLIHGQSRGNASHTASAD-------- 217
           +  FQNY   +L+R+T   ++DL LSL + FQ+P  I  Q          A         
Sbjct: 188 STQFQNYSPDLLSRTTTSHSQDLRLSLQS-FQEPNSILLQHHQQPHPHHHAHSHSHQHQQ 246

Query: 218 -----QTPFAGSAPV-GFD---------------SSFQRMLAWNN-----ETSAETRGTG 251
                Q  F+G+ P+ G+D               S FQRM+AWN+     + SA     G
Sbjct: 247 QNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMMAWNSGGGAADDSAGNASGG 306

Query: 252 GFLFNSSS------LSQQAAL--AFRGPLQSSFTQSVRAWDDIPVGKTHE---------- 293
           GF+FNS        L  Q  L    RGPLQSS T SVRAW D P+G T++          
Sbjct: 307 GFVFNSQQPPPVQPLFGQNQLFHTQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLH 366

Query: 294 ---------MQQSSVFGMP--------AGFNIPARIHGED-HHQHS--NRPSSSSPNNSH 333
                    + QS + G+         +GF IPARI GED  H H   NRPSS+S ++ H
Sbjct: 367 HHQILQQPAVHQSVISGIGFASPVGEFSGFCIPARIQGEDEEHDHGIHNRPSSASSDSRH 426

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2086350	420	TCP4 "AT3G15030" [Arabidopsis	0.482	0.383	0.612	1.5e-59
TAIR|locus:2009595	391	TCP3 "TEOSINTE BRANCHED 1, cyc	0.829	0.708	0.459	4.2e-57
TAIR|locus:2055861	361	TCP10 "AT2G31070" [Arabidopsis	0.538	0.498	0.492	5.8e-40
TAIR|locus:2076492	355	PTF1 "AT3G02150" [Arabidopsis	0.236	0.222	0.595	8.1e-24
TAIR|locus:2124539	365	TCP2 "AT4G18390" [Arabidopsis	0.302	0.276	0.537	7.8e-23
TAIR|locus:2009797	324	TCP24 "AT1G30210" [Arabidopsis	0.302	0.311	0.514	1e-20
UNIPROTKB|O49250	286	CYC "Transcription factor CYCL	0.212	0.248	0.52	4.5e-20
TAIR|locus:2181479	242	TCP17 "AT5G08070" [Arabidopsis	0.476	0.657	0.344	6.7e-17
TAIR|locus:2173557	360	TCP5 "AT5G60970" [Arabidopsis	0.206	0.191	0.597	7.9e-17
UNIPROTKB|Q9SNW8	314	DICH "Transcription factor DIC	0.314	0.334	0.396	1.4e-15

TAIR|locus:2086350 TCP4 "AT3G15030" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
 Identities = 106/173 (61%), Positives = 131/173 (75%)

Query:     8 GEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 67
             GEIV+V+GGHIVRSTGRKDRHSKV T+KGPRDRRVRLSAHTAIQFYDVQDRLG+DRPSKA
Sbjct:    29 GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKA 88

Query:    68 VDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAI-------QEQSESSG 120
             VDWLIKKAK+SID+LAELPPW P+ +   AA  A+P   +++  I       Q+Q +   
Sbjct:    89 VDWLIKKAKTSIDELAELPPWNPADAIRLAAANAKPRRTTAKTQISPSPPPPQQQQQQQQ 148

Query:   121 YSFQIHRQLG--DHNANNDSTFMSPPPLDTDAIADTIKSFFPT--STTASAIN 169
               F +    G  +H +NN+S+F+ PP +D+D+IADTIKSFFP   S+T +  N
Sbjct:   149 LQFGVGFNGGGAEHPSNNESSFL-PPSMDSDSIADTIKSFFPVIGSSTEAPSN 200

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0048366 "leaf development" evidence=IGI;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0003677 "DNA binding" evidence=IDA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2009595 TCP3 "TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 141/307 (45%), Positives = 180/307 (58%)

Query:     8 GEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 67
             GEIV+V+GGHIVRSTGRKDRHSKV T+KGPRDRRVRLSA TAIQFYDVQDRLG+DRPSKA
Sbjct:    33 GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKA 92

Query:    68 VDWLIKKAKSSIDKLAELPPWQPS-TSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQIH 126
             VDWLI KAKS+ID LA+LPPW P+ T   +AA  A      ++  I         +   H
Sbjct:    93 VDWLITKAKSAIDDLAQLPPWNPADTLRQHAAAAANAKPRKTKTLISPPPPQPEETE--H 150

Query:   127 RQLGDHNANNDSTFMSPPPLDTDAIADTIKSFFPTSTTASAINFQNYPAGILTRSTNPTE 186
              ++G+   +N+S+F+ P  +D+D+IADTIKSFFP ++T  + + Q  P    +R     +
Sbjct:   151 HRIGEEE-DNESSFL-PASMDSDSIADTIKSFFPVASTQQSYHHQ--PP---SRGNTQNQ 203

Query:   187 DL-GLSLHTAFQ---------DPGLIHGQSRGNASHTASADQTPFAGSAPVGFDSSFQRM 236
             DL  LSL + FQ         +P L  GQS    +  +S      +  +P  F    QR+
Sbjct:   204 DLLRLSLQS-FQNGPPFPNQTEPALFSGQSNNQLAFDSSTASWEQSHQSPE-F-GKIQRL 260

Query:   237 LAWNNETSAETRG-TGGXXXXXXXX-----XXXXXXXXRGPLQSSFTQSVRAWDDIPVGK 290
             ++WNN  +AE+ G TGG                     RGPLQS  T  +RAW D P   
Sbjct:   261 VSWNNVGAAESAGSTGGFVFASPSSLHPVYSQSQLLSQRGPLQSINTPMIRAWFD-PHHH 319

Query:   291 THEMQQS 297
              H  QQS
Sbjct:   320 HHHHQQS 326

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048366 "leaf development" evidence=IGI;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2055861 TCP10 "AT2G31070" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 101/205 (49%), Positives = 124/205 (60%)

Query:     1 MGMKGTE-----GEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDV 55
             MG+KG       GEIV+V+GGHI+R+TGRKDRHSKV+TSKGPRDRRVRLSAHTAIQFYDV
Sbjct:     1 MGLKGYSVGEGGGEIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDV 60

Query:    56 QDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAEP-NMGSSEMAIQE 114
             QDRLGYDRPSKAVDWLIKKAK++IDKL EL     +T      T  EP N       +  
Sbjct:    61 QDRLGYDRPSKAVDWLIKKAKTAIDKL-ELGETTTTT------TRQEPVNTKPESPTLVF 113

Query:   115 QSESSGYSFQIHRQLGDHNANNDSTFMSPPPLDTDAIADTIKSF--FPTSTTASAINFQN 172
             Q E++  +  +   L   +A    TF  P    T+    T  +F  +P     + ++   
Sbjct:   114 QRENNDQTQFVAANLDPEDAMK--TFF-PATTTTNGGGGTNINFQNYPHQDDNNMVSRTT 170

Query:   173 YPAGILTRSTNPTEDLGLSLHTAFQ 197
              P        N ++DLGLSLH  FQ
Sbjct:   171 TPP------PNLSQDLGLSLHP-FQ 188

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048366 "leaf development" evidence=IGI;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2076492 PTF1 "AT3G02150" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 8.1e-24, Sum P(2) = 8.1e-24
 Identities = 50/84 (59%), Positives = 59/84 (70%)

Query:     3 MKGTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYD 62
             MK  +  IV+V      R+ G KDRHSKV T +G RDRRVRLS  TAIQ YD+Q+RLG D
Sbjct:    58 MKSKDPRIVRVS-----RAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVD 112

Query:    63 RPSKAVDWLIKKAKSSIDKLAELP 86
             +PSKAVDWL+  AK  ID+L  LP
Sbjct:   113 QPSKAVDWLLDAAKEEIDELPPLP 136

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0048366 "leaf development" evidence=IGI

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2124539 TCP2 "AT4G18390" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 57/106 (53%), Positives = 69/106 (65%)

Query:    18 IVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKS 77
             + R++G KDRHSKV TSKGPRDRRVRLS  TA+QFYD+QDRLGYD+PSKAV+WLIK A+ 
Sbjct:    36 VSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAED 95

Query:    78 SIDKLAELP----PWQPSTSNNNAATEAEPNMGSSEMAIQEQSESS 119
             SI +L  L     P       N   T    N   S+ A    S++S
Sbjct:    96 SISELPSLNNTHFPTDDENHQNQTLTTVAAN-SLSKSACSSNSDTS 140

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0048366 "leaf development" evidence=IMP

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2009797 TCP24 "AT1G30210" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 52/101 (51%), Positives = 67/101 (66%)

Query:    18 IVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKS 77
             + R++G KDRHSKV TSKG RDRR+RLS  TAIQFYD+QDRLG+D+PSKAV+WLI  A  
Sbjct:    44 VSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASD 103

Query:    78 SIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSES 118
             SI  L  L         N   T++  + G+SE ++   S +
Sbjct:   104 SITDLPLLNTNFDHLDQNQNQTKSACSSGTSESSLLSLSRT 144

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048366 "leaf development" evidence=IMP;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|O49250 CYC "Transcription factor CYCLOIDEA" [Antirrhinum majus (taxid:4151)]

 Score = 212 (79.7 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 39/75 (52%), Positives = 59/75 (78%)

Query:    24 RKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLA 83
             +KDRHSK+YTS+GPRDRRVRLS   A +F+D+Q+ LG+D+PSK +DWL+ K+K++I +L 
Sbjct:    87 KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELV 146

Query:    84 ELPPWQPSTSNNNAA 98
             +      ST +N+++
Sbjct:   147 Q----SKSTKSNSSS 157

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

TAIR|locus:2181479 TCP17 "AT5G08070" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 60/174 (34%), Positives = 92/174 (52%)

Query:    18 IVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKS 77
             + R+ G KDRHSKV T +G RDRR+RLS  TAIQ YD+Q+RLG  +PSK +DWL++ AK+
Sbjct:    27 VSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKN 86

Query:    78 SIDKLAEL--PP-WQPSTSNNNAATEAEPNMGSSEMAIQEQSESSGYSFQIHRQLGDHNA 134
              +D L  L  PP +     N     E+ P +       +E  +     +     + DH  
Sbjct:    87 DVDLLPPLQFPPGFHQLNPNLTGLGESFPGVFDLGRTQREALDLEKRKWVNLDHVFDH-I 145

Query:   135 NNDSTFMSPPPLDTDAIADTIKSFFPTSTTASA---INFQNYPAGILTRSTNPT 185
             ++ + F       +++I    K +FPT T++S+    N  +    +L +S N T
Sbjct:   146 DHHNHF-------SNSIQSN-KLYFPTITSSSSSYHYNLGHLQQSLLDQSGNVT 191

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

TAIR|locus:2173557 TCP5 "AT5G60970" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 7.9e-17, P = 7.9e-17
 Identities = 43/72 (59%), Positives = 53/72 (73%)

Query:    18 IVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKS 77
             + R+ G KDRHSKV T +G RDRR+RLS  TAIQ YD+QDRLG  +PSK +DWL++ AK 
Sbjct:    57 VSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKD 116

Query:    78 SIDKLAELPPWQ 89
              +DKL   PP Q
Sbjct:   117 DVDKL---PPLQ 125

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0048366 "leaf development" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q9SNW8 DICH "Transcription factor DICHOTOMA" [Antirrhinum majus (taxid:4151)]

 Score = 208 (78.3 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 44/111 (39%), Positives = 70/111 (63%)

Query:     5 GTEGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRP 64
             GT G+ + +      + T +KDRHSK+   +GPRDRRVRLS   A +F+D+Q+ LG+D+P
Sbjct:    68 GTNGDPLVLANTLAKKHTPKKDRHSKINRPQGPRDRRVRLSIGIARKFFDLQEMLGFDKP 127

Query:    65 SKAVDWLIKKAKSSIDKLAELPPWQPSTSNNNAATEAE------PNMGSSE 109
             SK +DWL+ K+K +I +L +    + + SN+ +  + E      P +GSS+
Sbjct:   128 SKTLDWLLTKSKEAIKELVQSKSSKSNISNSPSECDQEVLSADLPYIGSSK 178

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
pfam03634	122	pfam03634, TCP, TCP family transcription factor	4e-34
PLN03106	447	PLN03106, TCP2, Protein TCP2; Provisional	3e-24
PLN03105	324	PLN03105, TCP24, transcription factor TCP24 (TEOSI	3e-19

>gnl|CDD|217650 pfam03634, TCP, TCP family transcription factor

 Score =  121 bits (305), Expect = 4e-34
 Identities = 37/88 (42%), Positives = 56/88 (63%)

Query: 21  STGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSID 80
           + G+KDRHSK +T  G RDRRVRLSA  A +F+D+QD LG+D PSK ++WL+++AK +I 
Sbjct: 1   AAGKKDRHSKRHTKVGGRDRRVRLSAECAARFFDLQDELGFDSPSKTIEWLLQQAKPAII 60

Query: 81  KLAELPPWQPSTSNNNAATEAEPNMGSS 108
            L          S+  +A ++  +   +
Sbjct: 61  ALTGTSTPPAKCSSAKSAAKSSKDPQQA 88

This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure. Length = 122

>gnl|CDD|215579 PLN03106, TCP2, Protein TCP2; Provisional

 Score =  102 bits (255), Expect = 3e-24
 Identities = 51/75 (68%), Positives = 59/75 (78%)

Query: 18  IVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKS 77
           + R++G KDRHSKV TSKG RDRRVRLS  TAIQFYD+QDRLGYD+PSKAV+WLIK A+ 
Sbjct: 68  VSRASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAED 127

Query: 78  SIDKLAELPPWQPST 92
           SI +L  L    P T
Sbjct: 128 SISELPSLNNSFPDT 142

Length = 447

>gnl|CDD|178652 PLN03105, TCP24, transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional

 Score = 86.5 bits (213), Expect = 3e-19
 Identities = 52/101 (51%), Positives = 67/101 (66%)

Query: 18  IVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKS 77
           + R++G KDRHSKV TSKG RDRR+RLS  TAIQFYD+QDRLG+D+PSKAV+WLI  A  
Sbjct: 44  VSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASD 103

Query: 78  SIDKLAELPPWQPSTSNNNAATEAEPNMGSSEMAIQEQSES 118
           SI  L  L         N   T++  + G+SE ++   S +
Sbjct: 104 SITDLPLLNTNFDHLDQNQNQTKSACSSGTSESSLLSLSRT 144

Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
PF03634	138	TCP: TCP family transcription factor; InterPro: IP	100.0
PLN03105	324	TCP24 transcription factor TCP24 (TEOSINTE BRANCHE	99.98
PLN03106	447	TCP2 Protein TCP2; Provisional	99.98

>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]

Probab=100.00  E-value=3.1e-38  Score=266.76  Aligned_cols=66  Identities=53%  Similarity=0.950  Sum_probs=63.7

Q ss_pred             cCCCCCCccccccCCCCCcceeecCHHHHHHHhhhhhhhCCCCCCchHHHHHHhcHHHHHHHhcCC
Q 019930           21 STGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELP   86 (334)
Q Consensus        21 ~~~~kDRHsKv~ta~g~RdRRvRls~~~A~~ff~lqd~LG~dk~skTv~WLL~~ak~aI~~l~~~~   86 (334)
                      .+++||||||||||+|+||||||||++||++|||||||||||||||||||||++||+||+||+...
T Consensus         1 ~~~~kdrhski~Ta~g~RdRRvRLs~~~Ar~FFdLQDmLGfDKaSKTveWLL~kSk~AIkeL~~~~   66 (138)
T PF03634_consen    1 AAGKKDRHSKIHTAQGPRDRRVRLSLEIARKFFDLQDMLGFDKASKTVEWLLTKSKKAIKELTQSS   66 (138)
T ss_pred             CCCCCCCCCccccccCCCCCceecCHHHHHHHHHHHHHhcCCCCCchHHHHHHhCHHHHHHHHHhh
Confidence            368999999999999999999999999999999999999999999999999999999999999873

The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].

>PLN03105 TCP24 transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional

Probab=99.98  E-value=2.2e-33  Score=262.66  Aligned_cols=76  Identities=63%  Similarity=0.973  Sum_probs=71.6

Q ss_pred             CCceEEeecceeeccCCCCCCccccccCCCCCcceeecCHHHHHHHhhhhhhhCCCCCCchHHHHHHhcHHHHHHHhcCC
Q 019930            7 EGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELP   86 (334)
Q Consensus         7 ~g~iv~~~~~~~~r~~~~kDRHsKv~ta~g~RdRRvRls~~~A~~ff~lqd~LG~dk~skTv~WLL~~ak~aI~~l~~~~   86 (334)
                      ..+||.|     .|+.++||||||||||+|+||||||||++||++|||||||||||||||||||||++||+||+||+.+.
T Consensus        38 ssrivrv-----sRa~g~KDRHSKI~TAqGpRDRRvRLSv~iArkFFdLQDmLGFDKaSKTVEWLL~kSk~AI~ELp~l~  112 (324)
T PLN03105         38 SSRIIRV-----SRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLLN  112 (324)
T ss_pred             cceEEEe-----eccCCCCCcccceecccCCcccceecCHHHHHHHhhHHHHhCCCCcchHHHHHHHHhHHHHHhcccCc
Confidence            3467777     79999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             C
Q 019930           87 P   87 (334)
Q Consensus        87 ~   87 (334)
                      .
T Consensus       113 ~  113 (324)
T PLN03105        113 T  113 (324)
T ss_pred             c
Confidence            4

>PLN03106 TCP2 Protein TCP2; Provisional

Probab=99.98  E-value=6.1e-33  Score=269.59  Aligned_cols=70  Identities=70%  Similarity=1.028  Sum_probs=66.7

Q ss_pred             eccCCCCCCccccccCCCCCcceeecCHHHHHHHhhhhhhhCCCCCCchHHHHHHhcHHHHHHHhcCCCC
Q 019930           19 VRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPW   88 (334)
Q Consensus        19 ~r~~~~kDRHsKv~ta~g~RdRRvRls~~~A~~ff~lqd~LG~dk~skTv~WLL~~ak~aI~~l~~~~~~   88 (334)
                      .|+.++||||||||||+|+||||||||++|||||||||||||||||||||||||++||+||+||+.++..
T Consensus        69 sRasg~KDRHSKI~Ta~G~RDRRvRLS~~~ArkFFdLQD~LGfDkaSKTvEWLL~~Sk~AI~EL~~l~~s  138 (447)
T PLN03106         69 SRASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLNNS  138 (447)
T ss_pred             ecccCCCCcccceecccCCcccceeccHHHHHHHHhHHHHhCCCCcchHHHHHHHHhHHHHHHhhccccc
Confidence            3678999999999999999999999999999999999999999999999999999999999999988753

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 55/422 (13%), Positives = 97/422 (22%), Gaps = 156/422 (36%)

Query: 3   MKGTEGEIVQVEGGHIVRSTGRK---DRHSKVYTSK--------GPRDRRVRL------- 44
            +    +I+ V     V +   K   D    + + +                        
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 45  -SAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK--------------SSIDKL----AEL 85
                  +F +   R+ Y        +L+   K                 D+L       
Sbjct: 74  KQEEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 86  PPW-----QPSTSNNNAATEAEPN-------M---GSSEMAI---QEQSESSGYSFQIH- 126
             +     QP      A  E  P        +   G + +A+             F+I  
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 127 --------------------RQLGDHNANNDSTFMSPPPLDTDAIADTIKSFF-----PT 161
                                Q+ D N  + S   S   L   +I   ++          
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 162 S----------TTASAINFQNYPAGIL--TRSTNPTEDLGLSLHTAF----QDPGLIHGQ 205
                         +A N       IL  TR    T+ L  +  T          L   +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 206 SRG---NASHTASAD---QT----PFAGSAPVGFDSSFQRMLA-WNNETSAETRGTGGFL 254
            +            D   +     P   S       S +  LA W+N             
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDN------------- 346

Query: 255 FNSSSLSQQAALAFRGPLQSSFTQSVRAWDDIPVGKTHEMQQS----SVFGMPAGFNIPA 310
           +   +  +         L +    S+   +        E ++     SVF  P   +IP 
Sbjct: 347 WKHVNCDK---------LTTIIESSLNVLE------PAEYRKMFDRLSVF--PPSAHIPT 389

Query: 311 RI 312
            +
Sbjct: 390 IL 391

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00