Citrus Sinensis ID: 019956

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccHHccccccEHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcc
Coil and Loop (DISEMBL)
meyrkikdedndgggsssgdleslrgkpisvtnvasksselanwkRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNhegvtddnrlsttldevivyPIPAVLYLVKNLLQYYIFAyvdapgyqilknlNIISTGVLYRIILKKKLSEIQWAAFILLCCGcttaqlnsnsdrvlqtPLQGWIMAIVMALLSGFAGVYTEAIMkkrpsrninvqNFWLYVFGMAFNAVAIVIQDFDavmnkgffhgYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM
Flexible Loop (DISEMBL)
meyrkikdedndgggsssgdleslrgkpisvtnvasksselanwkrkSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHegvtddnrlsttlDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM
Low Complexity Region (SEG)
MEYRKIKdedndgggsssgdleslRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM
Disordered region (IsUnstruct)
****************************************LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFL***
Disordered Region (DISOPRED)
***********************************************SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM
Disordered Region (DISEMBL)
*********************ESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM
Disordered Region (DISPRO)
*****************************************ANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
F4JN00	352	CMP-sialic acid transport	yes	no	0.987	0.934	0.849	1e-164
Q8LGE9	340	CMP-sialic acid transport	no	no	0.834	0.817	0.426	4e-53
P78382	337	CMP-sialic acid transport	yes	no	0.834	0.824	0.296	2e-31
O08520	336	CMP-sialic acid transport	no	no	0.834	0.827	0.285	2e-30
Q93890	368	UDP-galactose/UDP-N-acety	yes	no	0.927	0.839	0.312	3e-30
Q9C5H6	405	CMP-sialic acid transport	no	no	0.816	0.671	0.303	3e-30
Q8GY97	406	CMP-sialic acid transport	no	no	0.816	0.669	0.317	3e-30
Q61420	336	CMP-sialic acid transport	yes	no	0.834	0.827	0.285	4e-30
Q9R0M8	390	UDP-galactose translocato	no	no	0.624	0.533	0.366	5e-30
Q8WMS0	397	UDP-galactose translocato	no	no	0.624	0.523	0.361	7e-30

>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1

 Score =  576 bits (1485), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/339 (84%), Positives = 301/339 (88%), Gaps = 10/339 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMVM
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVM 297

Query: 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           KYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS
Sbjct: 298 KYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGS 336

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score =  208 bits (530), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 125/293 (42%), Positives = 173/293 (59%), Gaps = 15/293 (5%)

Query: 50  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
           V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L   W     +  
Sbjct: 9   VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFL---WREMRTSSS 65

Query: 110 NRLSTTLD--EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIIL 167
                T D   V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ L
Sbjct: 66  TTSRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFL 125

Query: 168 KKKLSEIQWAAFILLCCGCTTAQL----NSNSDRVLQTPLQGWIMAIVMALLSGFAGVYT 223
           K+KLS++QW A  LL  G TT+Q+     ++ D +   P+QG+++ I+ A LS  AG+YT
Sbjct: 126 KRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYT 185

Query: 224 EAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKG-----FFHGYSFITVLM 278
           E +M KR +  +  QN  LY FG  FN   ++  DF     KG      F GYS  T L+
Sbjct: 186 EFLM-KRNNDTLYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLV 244

Query: 279 ILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG 331
           +LN   +G+ VS +MKYADNIVKVYSTS+AMLLT V S++LF F  +L  FLG
Sbjct: 245 VLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLG 297

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|P78382|S35A1_HUMAN CMP-sialic acid transporter OS=Homo sapiens GN=SLC35A1 PE=2 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 160/287 (55%), Gaps = 9/287 (3%)

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
           +T++ +   I + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct: 20  MTLMAAVYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRE 79

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct: 80  NVLGSP-KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query: 170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
            LS++QW +  +LC G T  Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct: 139 TLSKLQWVSVFMLCAGVTLVQWKPAQATKVVVEQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
           +K   + ++ V+N  +Y+ G+      + + D   +  KGFF+GY++    +I   ++ G
Sbjct: 199 LKSSDT-SLWVRNIQMYLSGIIVTLAGVYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query: 287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
           +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG++
Sbjct: 258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTL 304

Transports CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Homo sapiens (taxid: 9606)

>sp|O08520|S35A1_CRIGR CMP-sialic acid transporter OS=Cricetulus griseus GN=SLC35A1 PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 161/287 (56%), Gaps = 9/287 (3%)

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
           +T++ ++  + + +++   K  Y  TTA  + E +K  +S+  LA+    +   +    +
Sbjct: 20  MTLVAAAYTVALRYTRTTAKELYFSTTAVCVTEVIKLLISVGLLAKETGSLGRFKASLSE 79

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct: 80  NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query: 170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
            LS++QW +  +LC G    Q   + + +V+  Q+PL G+    +  L SGFAGVY E +
Sbjct: 139 TLSKLQWVSVFMLCGGVILVQWKPAQATKVVVEQSPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
           +K   + ++ V+N  +Y+ G+    V   + D   +  KGFF+GY++    +I   ++ G
Sbjct: 199 LKSSDT-SLWVRNIQMYLSGIVVTLVGTYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query: 287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
           +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L+F +G++
Sbjct: 258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLSFAMGAL 304

Transports CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Cricetulus griseus (taxid: 10029)

>sp|Q93890|SRF3_CAEEL UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 OS=Caenorhabditis elegans GN=srf-3 PE=1 SV=5

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 168/317 (52%), Gaps = 8/317 (2%)

Query: 22  ESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTT 80
           ES    P+ + +V  +SS+ +    K+ + + LT+  S   +LI +S+ R     +  T 
Sbjct: 18  ESSVKIPVPLVSVGRESSQ-SKGNMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTV 76

Query: 81  ANFLVETLKCALSLAALARIWNHEGVTDDNR---LSTTLDEVIVYPIPAVLYLVKNLLQY 137
           A +L E +KC + L  +A+           R   L    D + V  IPA++Y+V+N L Y
Sbjct: 77  AVWLTEVIKCFICLFLVAQEETPRRFIHALRTQILEQPYDTLKVC-IPAMIYIVQNNLFY 135

Query: 138 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR 197
              +++DA  + I   L I +  +   IIL++ L+  QW A  +L  G +  QL     +
Sbjct: 136 VAASHLDAATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAK 195

Query: 198 VL--QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIV 255
               ++P  G++  +V   LSGFAG+Y E I+K     ++ ++N  + VF +  +  AI 
Sbjct: 196 ESSGESPFVGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIY 255

Query: 256 IQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVV 315
           +QD   V   G  +G+  I  L +L + + G++V++ +KYADNI K ++TSVA++L+ + 
Sbjct: 256 MQDSKTVNEYGLLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIG 315

Query: 316 SVFLFGFHLSLAFFLGS 332
           S+FLF F  S  F LG+
Sbjct: 316 SIFLFDFIPSFTFLLGA 332

Acts as a transporter of both UDP-galactose and UDP-N-acetylglucosamine into the Golgi lumen.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9C5H6|CSTR3_ARATH CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 148/290 (51%), Gaps = 18/290 (6%)

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
           +L   Q +L+  SK  GK+ +S  + NFL E  K   ++  L     H+ V +   LS +
Sbjct: 51  MLVGLQPVLVYMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVS 110

Query: 116 L-----DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
                    ++  +PA+LY + N L++ +  Y +    ++L NL ++   VL ++++K++
Sbjct: 111 TFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRR 170

Query: 171 LSEIQWAAFILLCCGCTTAQLNSNSD--RVLQTPLQ--GWIMAIVMALLSGFAGVYTEAI 226
            S IQW A  LL  G +  QL S  +    +  PL    ++  ++   +   A V+ E  
Sbjct: 171 FSIIQWEALALLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYA 230

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKG-----FFHGYSFITVLMILN 281
           +K +   +I +QN +LY +G  FN + I+      V+ KG        G+S  T+ +ILN
Sbjct: 231 LKSQYDTSIYLQNLFLYGYGAIFNFLGIL----GTVIYKGPGSFDILQGHSRATMFLILN 286

Query: 282 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG 331
           +A  GI  S   KYAD I+K YS++VA + T + S  LFG  +++ F LG
Sbjct: 287 NAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHVITMNFLLG 336

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY97|CSTR2_ARATH CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 148/290 (51%), Gaps = 18/290 (6%)

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-T 114
           +L   Q +L+  SK  GK+ +S  + NFL E  K   ++  L     H+ V +   LS +
Sbjct: 53  MLVGLQPVLVYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLS 112

Query: 115 TLDEV----IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
           T  +     ++  +PA LY + N L++ +  Y +    ++L NL ++   VL ++I+K++
Sbjct: 113 TFVQAARNNMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRR 172

Query: 171 LSEIQWAAFILLCCGCTTAQLNSNSD--RVLQTPLQ--GWIMAIVMALLSGFAGVYTEAI 226
            S IQW A  LL  G +  QL S  +    +  P+    +I   +   +   A VY E  
Sbjct: 173 FSIIQWEALALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSLASVYNEYA 232

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKG-----FFHGYSFITVLMILN 281
           +K +   +I +QN +LY +G  FN + I+      V+ KG        G+S  T+ +ILN
Sbjct: 233 LKSQYDTSIYLQNLFLYGYGAIFNFLGIL----GTVIYKGPGSFDILQGHSRATMFLILN 288

Query: 282 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG 331
           +A  GI  S   KYAD I+K YS++VA + T + S  LFG  L++ F LG
Sbjct: 289 NAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHILTMNFLLG 338

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q61420|S35A1_MOUSE CMP-sialic acid transporter OS=Mus musculus GN=Slc35a1 PE=1 SV=2

 Score =  132 bits (332), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 156/287 (54%), Gaps = 9/287 (3%)

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
           +T++ ++  + + +++   +  Y  TTA  + E +K  +S+  LA+    +   +    +
Sbjct: 20  MTLVAAAYTVALRYTRTTAEELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSE 79

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           N L +   E+    +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct: 80  NVLGSP-KELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query: 170 KLSEIQWAAFILLCCGCTTAQ---LNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAI 226
            LS++QW +  +LC G T  Q     +    V Q PL G+    +  L SGFAGVY E +
Sbjct: 139 TLSKLQWISVFMLCGGVTLVQWKPAQATKVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
           +K   + ++ V+N  +Y+ G+        + D   +  KGFF+GY++    +I   ++ G
Sbjct: 199 LKSSDT-SLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGG 257

Query: 287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
           +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L+F LG++
Sbjct: 258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGAL 304

Transport CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Mus musculus (taxid: 10090)

>sp|Q9R0M8|S35A2_MOUSE UDP-galactose translocator OS=Mus musculus GN=Slc35a2 PE=2 SV=1

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 126/213 (59%), Gaps = 5/213 (2%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +P+++Y ++N LQY   + + A  +Q+   L I++T +   ++L + LS +QWA+ +LL 
Sbjct: 117 VPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLF 176

Query: 184 CGCT---TAQLNSNSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 239
            G       Q   +  R L Q P  G    +   L SGFAGVY E I+K   S ++ ++N
Sbjct: 177 TGVAIVQAQQAGGSGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRN 235

Query: 240 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 299
             L +FG A   V +   +  AV ++GFF GY+     ++LN A  G+ V++V+KYADNI
Sbjct: 236 LQLGLFGTALGLVGLWWAEGTAVASQGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNI 295

Query: 300 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           +K ++TS++++L+ V S+ LFGFHL   F LG+
Sbjct: 296 LKGFATSLSIVLSTVASIRLFGFHLDPLFALGA 328

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Mus musculus (taxid: 10090)

>sp|Q8WMS0|S35A2_CANFA UDP-galactose translocator OS=Canis familiaris GN=SLC35A2 PE=2 SV=2

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 124/213 (58%), Gaps = 5/213 (2%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +P+++Y ++N LQY   + + A  +Q+   L I++T +   ++L + LS +QWA+ +LL 
Sbjct: 117 VPSLIYTLQNNLQYVAISNMPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLF 176

Query: 184 CGCT---TAQLNSNSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 239
            G       Q      R L Q P  G    +   L SGFAGVY E I+K   S ++ ++N
Sbjct: 177 TGVAIVQAQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRN 235

Query: 240 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 299
             L +FG A   V +   +  AV  +GFF GY+     ++LN A  G+ V++V+KYADNI
Sbjct: 236 LQLGLFGTALGLVGLWWAEGTAVARRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNI 295

Query: 300 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           +K ++TS++++L+ V S+ LFGFH+   F LG+
Sbjct: 296 LKGFATSLSIVLSTVASIRLFGFHVDPLFALGA 328

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
449444425	360	PREDICTED: CMP-sialic acid transporter 4	0.996	0.922	0.845	1e-167
255564904	356	CMP-sialic acid transporter, putative [R	0.993	0.929	0.866	1e-165
395486311	354	CMP-sialic acid transporter-like protein	0.993	0.935	0.852	1e-164
297802420	352	At4g35335 [Arabidopsis lyrata subsp. lyr	0.987	0.934	0.855	1e-163
50198781	352	At4g35335 [Arabidopsis thaliana] gi|5197	0.987	0.934	0.852	1e-163
240256164	352	Nucleotide-sugar transporter family prot	0.987	0.934	0.849	1e-162
356501771	355	PREDICTED: probable UDP-sugar transporte	0.996	0.935	0.838	1e-159
297744466	354	unnamed protein product [Vitis vinifera]	0.993	0.935	0.855	1e-159
356554409	355	PREDICTED: probable UDP-sugar transporte	1.0	0.938	0.825	1e-158
225428328	707	PREDICTED: cysteine proteinase-like [Vit	0.993	0.468	0.855	1e-157

>gi|449444425|ref|XP_004139975.1| PREDICTED: CMP-sialic acid transporter 4-like [Cucumis sativus]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/343 (84%), Positives = 313/343 (91%), Gaps = 11/343 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSG-------DLESLR-GKPISVTNVA---SKSSELANWKRKSV 49
           MEYR+IKD++ DG G  SG       D+ESLR GKPIS +NVA   + S + + W++KS+
Sbjct: 1   MEYRRIKDQEKDGNGDGSGVGVAVADDIESLRAGKPISGSNVAKLGANSFDRSKWQQKSI 60

Query: 50  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
           VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKC LSLAAL+RIW  EGVT+D
Sbjct: 61  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCVLSLAALSRIWGSEGVTED 120

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           NRLSTT DEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTG+LYRIILKK
Sbjct: 121 NRLSTTYDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGILYRIILKK 180

Query: 170 KLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKK 229
           KLSEIQWAAFILLC GCTTAQLNSNSD VLQTP QGW+MAI+MALLSGFAGVYTEAI+KK
Sbjct: 181 KLSEIQWAAFILLCAGCTTAQLNSNSDHVLQTPFQGWVMAIIMALLSGFAGVYTEAIIKK 240

Query: 230 RPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAV 289
           RPSRN+NVQNFWLYVFGMAFNA+A+VIQDFDA+ NKGFFHGYSFITVLMILNHALSGIAV
Sbjct: 241 RPSRNVNVQNFWLYVFGMAFNAIAMVIQDFDAIANKGFFHGYSFITVLMILNHALSGIAV 300

Query: 290 SMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           SMV+KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS
Sbjct: 301 SMVLKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 343

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564904|ref|XP_002523445.1| CMP-sialic acid transporter, putative [Ricinus communis] gi|223537273|gb|EEF38904.1| CMP-sialic acid transporter, putative [Ricinus communis]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/337 (86%), Positives = 310/337 (91%), Gaps = 6/337 (1%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPISV--TNVAS---KSSELANWKRKSVVTLALT 55
           MEYRKIKDED D G +   D+ESLR K +SV  +NVA+    S++ + WKRKS+VTLALT
Sbjct: 1   MEYRKIKDEDKDEGATGD-DIESLRNKSLSVAASNVAALGGGSNDRSKWKRKSIVTLALT 59

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
            LTSSQAILIVWSKRAG+YEYSVTTANFLVETLKC LSLAALARIW +EGVT+DNRLSTT
Sbjct: 60  FLTSSQAILIVWSKRAGRYEYSVTTANFLVETLKCVLSLAALARIWKNEGVTEDNRLSTT 119

Query: 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQ 175
           LDEV VYPIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLY++ILK+KLSEIQ
Sbjct: 120 LDEVSVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYQMILKRKLSEIQ 179

Query: 176 WAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNI 235
           WAAFILLC GCTTAQLN +SD VLQTP QGWIMAIVMALLSGFAGVYTEAI+KKRPSRNI
Sbjct: 180 WAAFILLCAGCTTAQLNPSSDHVLQTPYQGWIMAIVMALLSGFAGVYTEAIIKKRPSRNI 239

Query: 236 NVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKY 295
           NVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMILNHALSGIAVSMVMKY
Sbjct: 240 NVQNFWLYVFGMIFNAVAIVIQDFDAVMNKGFFHGYSLITVLMILNHALSGIAVSMVMKY 299

Query: 296 ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           ADNIVKVY+TSVAMLLTAVVSVFLFGFHLSLAFFLGS
Sbjct: 300 ADNIVKVYATSVAMLLTAVVSVFLFGFHLSLAFFLGS 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395486311|gb|AFN67104.1| CMP-sialic acid transporter-like protein [Vitis vinifera]

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/338 (85%), Positives = 304/338 (89%), Gaps = 7/338 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D D G     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDDGAVGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 180 QWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRN 239

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 294
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMI+NHALSGIAVSMVMK
Sbjct: 240 INVQNFWLYVFGMVFNAVAIVIQDFDAVMNKGFFHGYSLITVLMIVNHALSGIAVSMVMK 299

Query: 295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           YADNIVKVYSTSVAMLLTA+VSVFLFGFHLSLAFFLGS
Sbjct: 300 YADNIVKVYSTSVAMLLTALVSVFLFGFHLSLAFFLGS 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802420|ref|XP_002869094.1| At4g35335 [Arabidopsis lyrata subsp. lyrata] gi|297314930|gb|EFH45353.1| At4g35335 [Arabidopsis lyrata subsp. lyrata]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/339 (85%), Positives = 303/339 (89%), Gaps = 10/339 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+   G+   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVGA---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE
Sbjct: 118 TTYDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFITVLMILNHALSGIAVSMVM
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITVLMILNHALSGIAVSMVM 297

Query: 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           KYADNIVKVYSTSVAMLLTAVVSVFLF +HLSLAFFLGS
Sbjct: 298 KYADNIVKVYSTSVAMLLTAVVSVFLFNYHLSLAFFLGS 336

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50198781|gb|AAT70424.1| At4g35335 [Arabidopsis thaliana] gi|51971024|dbj|BAD44204.1| unnamed protein product [Arabidopsis thaliana] gi|53828601|gb|AAU94410.1| At4g35335 [Arabidopsis thaliana]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 289/339 (85%), Positives = 302/339 (89%), Gaps = 10/339 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMVM
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVM 297

Query: 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           KYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS
Sbjct: 298 KYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGS 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256164|ref|NP_680766.5| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|380876874|sp|F4JN00.1|CSTR4_ARATH RecName: Full=CMP-sialic acid transporter 4; Short=CMP-SA-Tr 4; Short=CMP-Sia-Tr 4 gi|332661100|gb|AEE86500.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/339 (84%), Positives = 301/339 (88%), Gaps = 10/339 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMVM
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVM 297

Query: 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           KYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS
Sbjct: 298 KYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGS 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501771|ref|XP_003519697.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/340 (83%), Positives = 300/340 (88%), Gaps = 8/340 (2%)

Query: 1   MEYRKIKDEDN--DGGGSSSGD--LESLRGKPISV---TNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED   D G    G   L S+    +S    T + S   E   WKRKSVVTLA
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLSAEAETKIDSHR-EKVKWKRKSVVTLA 59

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LTVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL+
Sbjct: 60  LTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRLT 119

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TTLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKKKLSE
Sbjct: 120 TTLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKKLSE 179

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWAAF+LL  GCTTAQLNSNSDRVLQTP QGW+MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 180 IQWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPSR 239

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293
           NINVQNFWLYVFGM FNAVAI++QDFDAVMNKGFFHGYSFITVLMI NHALSGIAVSMVM
Sbjct: 240 NINVQNFWLYVFGMCFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVM 299

Query: 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
           KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG++
Sbjct: 300 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTV 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744466|emb|CBI37728.3| unnamed protein product [Vitis vinifera]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/338 (85%), Positives = 305/338 (90%), Gaps = 7/338 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D DGG     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 180 QWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRN 239

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 294
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMI+NHALSGIAVSMVMK
Sbjct: 240 INVQNFWLYVFGMVFNAVAIVIQDFDAVMNKGFFHGYSLITVLMIVNHALSGIAVSMVMK 299

Query: 295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           YADNIVKVYSTSVAMLLTA+VSVFLFGFHLSLAFFLGS
Sbjct: 300 YADNIVKVYSTSVAMLLTALVSVFLFGFHLSLAFFLGS 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554409|ref|XP_003545539.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/339 (82%), Positives = 297/339 (87%), Gaps = 6/339 (1%)

Query: 1   MEYRKIKDEDN--DGGGSSSGD--LESLRGKPISVTNVASKSS--ELANWKRKSVVTLAL 54
           MEYRKIKDED   D G    G   L S+    ++        S  E   WKRKSVVTLAL
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLTSEGETKIDSHREKVKWKRKSVVTLAL 60

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQ ILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL+T
Sbjct: 61  TVLTSSQGILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRLTT 120

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           TLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKK+LSEI
Sbjct: 121 TLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKRLSEI 180

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAF+LL  GCTTAQLNSNSDRVLQTP QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 181 QWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPSRN 240

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 294
           INVQNFWLYVFGM FNAVA+++QDFDAVMNKGFFHGYSFITVLMI NHALSGIAVSMVMK
Sbjct: 241 INVQNFWLYVFGMCFNAVAMLVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMK 300

Query: 295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
           YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG++
Sbjct: 301 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTV 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428328|ref|XP_002279940.1| PREDICTED: cysteine proteinase-like [Vitis vinifera]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/338 (85%), Positives = 305/338 (90%), Gaps = 7/338 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D DGG     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 180 QWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRN 239

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 294
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMI+NHALSGIAVSMVMK
Sbjct: 240 INVQNFWLYVFGMVFNAVAIVIQDFDAVMNKGFFHGYSLITVLMIVNHALSGIAVSMVMK 299

Query: 295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           YADNIVKVYSTSVAMLLTA+VSVFLFGFHLSLAFFLGS
Sbjct: 300 YADNIVKVYSTSVAMLLTALVSVFLFGFHLSLAFFLGS 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:504955503	352	AT4G35335 [Arabidopsis thalian	0.993	0.940	0.830	4.3e-141
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	0.840	0.823	0.432	7.8e-55
UNIPROTKB|P78382	337	SLC35A1 "CMP-sialic acid trans	0.834	0.824	0.296	3.1e-35
UNIPROTKB|F1S0G0	339	SLC35A1 "Uncharacterized prote	0.834	0.820	0.296	4e-35
WB|WBGene00005153	368	srf-3 [Caenorhabditis elegans	0.909	0.823	0.311	4e-35
UNIPROTKB|Q93890	368	srf-3 "UDP-galactose/UDP-N-ace	0.909	0.823	0.311	4e-35
ZFIN|ZDB-GENE-080716-17	337	slc35a1 "solute carrier family	0.834	0.824	0.313	4e-35
RGD|1311359	336	Slc35a1 "solute carrier family	0.834	0.827	0.296	6.5e-35
UNIPROTKB|Q3SZP1	337	SLC35A1 "Solute carrier family	0.834	0.824	0.296	1.7e-34
UNIPROTKB|Q8WMR9	337	SLC35A1 "Uncharacterized prote	0.834	0.824	0.299	1.7e-34

TAIR|locus:504955503 AT4G35335 [Arabidopsis thaliana (taxid:3702)]

 Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
 Identities = 280/337 (83%), Positives = 291/337 (86%)

Query:     1 MEYRKIKXXXXXXXXXXXXXXXXXRGKPISVTNVASK-----SSELANWKRKSVVTLALT 55
             MEYRKIK                 +   ++ +N+A       SSE  NWKRK VVT ALT
Sbjct:     1 MEYRKIKDEDDHDVASDIESVKG-KSHTVASSNIAMATLGVGSSERINWKRKGVVTCALT 59

Query:    56 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
             +LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLSTT
Sbjct:    60 ILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLSTT 119

Query:   116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQ 175
              DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSEIQ
Sbjct:   120 FDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSEIQ 179

Query:   176 WAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNI 235
             WA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSRNI
Sbjct:   180 WAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSRNI 239

Query:   236 NVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKY 295
             NVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMVMKY
Sbjct:   240 NVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVMKY 299

Query:   296 ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
             ADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS
Sbjct:   300 ADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGS 336

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 126/291 (43%), Positives = 176/291 (60%)

Query:    50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
             V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L R       T  
Sbjct:     9 VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLWREMRTSSSTT- 67

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             +R++T    V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ LK+
Sbjct:    68 SRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKR 127

Query:   170 KLSEIQWAAFILLCCGCTTAQLN----SNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEA 225
             KLS++QW A  LL  G TT+Q+     ++ D +   P+QG+++ I+ A LS  AG+YTE 
Sbjct:   128 KLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYTEF 187

Query:   226 IMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKG-----FFHGYSFITVLMIL 280
             +MK R +  +  QN  LY FG  FN   ++  DF     KG      F GYS  T L++L
Sbjct:   188 LMK-RNNDTLYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLVVL 246

Query:   281 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG 331
             N   +G+ VS +MKYADNIVKVYSTS+AMLLT V S++LF F  +L  FLG
Sbjct:   247 NLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLG 297

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

UNIPROTKB|P78382 SLC35A1 "CMP-sialic acid transporter" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 85/287 (29%), Positives = 160/287 (55%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ +   I + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    20 MTLMAAVYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRE 79

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G T  Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct:   139 TLSKLQWVSVFMLCAGVTLVQWKPAQATKVVVEQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+      + + D   +  KGFF+GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIIVTLAGVYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
             +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG++
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTL 304

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0015782 "CMP-N-acetylneuraminate transport" evidence=TAS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1S0G0 SLC35A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 85/287 (29%), Positives = 162/287 (56%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ ++  + + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    22 MTLVAAAYTVALRYTRTSDKELYFSTTAVCITEVIKLFLSVGILAKETGNLGRFKASLRE 81

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    82 NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 140

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G    Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct:   141 TLSKLQWISVFMLCGGVILVQWKPAEATKVMVEQNPLLGFGAIAIAVLCSGFAGVYFEKV 200

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+    V + + D   +  KGFF+GY++   L+I   ++ G
Sbjct:   201 LKSSDT-SLWVRNIQMYLSGIVVTLVGVYLSDGAEIKEKGFFYGYTYYVWLVIFLASVGG 259

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
             +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG++
Sbjct:   260 LYTSIVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTL 306

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

WB|WBGene00005153 srf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 97/311 (31%), Positives = 166/311 (53%)

Query:    28 PISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTTANFLVE 86
             P+ + +V  +SS+ +    K+ + + LT+  S   +LI +S+ R     +  T A +L E
Sbjct:    24 PVPLVSVGRESSQ-SKGNMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTVAVWLTE 82

Query:    87 TLKCALSLAALARIWNHEGVTDDNR---LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYV 143
              +KC + L  +A+           R   L    D + V  IPA++Y+V+N L Y   +++
Sbjct:    83 VIKCFICLFLVAQEETPRRFIHALRTQILEQPYDTLKVC-IPAMIYIVQNNLFYVAASHL 141

Query:   144 DAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL--QT 201
             DA  + I   L I +  +   IIL++ L+  QW A  +L  G +  QL     +    ++
Sbjct:   142 DAATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGES 201

Query:   202 PLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDA 261
             P  G++  +V   LSGFAG+Y E I+K     ++ ++N  + VF +  +  AI +QD   
Sbjct:   202 PFVGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDSKT 261

Query:   262 VMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFG 321
             V   G  +G+  I  L +L + + G++V++ +KYADNI K ++TSVA++L+ + S+FLF 
Sbjct:   262 VNEYGLLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFD 321

Query:   322 FHLSLAFFLGS 332
             F  S  F LG+
Sbjct:   322 FIPSFTFLLGA 332

GO:0016020 "membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015785 "UDP-galactose transport" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IC

UNIPROTKB|Q93890 srf-3 "UDP-galactose/UDP-N-acetylglucosamine transporter srf-3" [Caenorhabditis elegans (taxid:6239)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 97/311 (31%), Positives = 166/311 (53%)

Query:    28 PISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTTANFLVE 86
             P+ + +V  +SS+ +    K+ + + LT+  S   +LI +S+ R     +  T A +L E
Sbjct:    24 PVPLVSVGRESSQ-SKGNMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTVAVWLTE 82

Query:    87 TLKCALSLAALARIWNHEGVTDDNR---LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYV 143
              +KC + L  +A+           R   L    D + V  IPA++Y+V+N L Y   +++
Sbjct:    83 VIKCFICLFLVAQEETPRRFIHALRTQILEQPYDTLKVC-IPAMIYIVQNNLFYVAASHL 141

Query:   144 DAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL--QT 201
             DA  + I   L I +  +   IIL++ L+  QW A  +L  G +  QL     +    ++
Sbjct:   142 DAATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGES 201

Query:   202 PLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDA 261
             P  G++  +V   LSGFAG+Y E I+K     ++ ++N  + VF +  +  AI +QD   
Sbjct:   202 PFVGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDSKT 261

Query:   262 VMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFG 321
             V   G  +G+  I  L +L + + G++V++ +KYADNI K ++TSVA++L+ + S+FLF 
Sbjct:   262 VNEYGLLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFD 321

Query:   322 FHLSLAFFLGS 332
             F  S  F LG+
Sbjct:   322 FIPSFTFLLGA 332

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015785 "UDP-galactose transport" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

ZFIN|ZDB-GENE-080716-17 slc35a1 "solute carrier family 35 (CMP-sialic acid transporter), member A1" [Danio rerio (taxid:7955)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 90/287 (31%), Positives = 159/287 (55%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEG---VTDDN 110
             +T++ ++  + + +++      Y  TTA  L E +K  LSL  L R     G        
Sbjct:    18 MTLIAATYTVALRYTRTVSTELYFSTTAVCLAEIIKLLLSLIMLVRETGDVGRCRAALVT 77

Query:   111 RLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
              +  +  E++   +P+V+Y ++N + +   + +DA  YQ+   L I  T +   ++L + 
Sbjct:    78 HIFRSPKELLKLSVPSVVYAIQNNMAFVALSNLDAAVYQVTYQLKIPCTALCTVLMLNRS 137

Query:   171 LSEIQWAAFILLCCGCTTAQL---NSNSDRVLQTPLQGWIMAIVMALL-SGFAGVYTEAI 226
             LS +QW +  +LC G T  Q    +S   +V Q P  G+ MAI +A+L SGFAGVY E +
Sbjct:   138 LSRLQWFSVFMLCAGVTLVQWTPPHSTKVQVEQNPFLGF-MAIAVAVLCSGFAGVYFEKV 196

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+A   + + + D   V+ KGFF+GY+    L++   ++ G
Sbjct:   197 LKSSDT-SLWVRNIQMYLSGIAVTLMGVYMTDGARVLEKGFFYGYTPWVCLVVFLASVGG 255

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
             +  S+V+KY DNI+K +S + A++L+ V SV LFG  ++L F  G++
Sbjct:   256 MYTSVVVKYTDNIMKGFSAAAAIVLSTVASVLLFGLQITLTFISGAL 302

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

RGD|1311359 Slc35a1 "solute carrier family 35 (CMP-sialic acid transporter), member A1" [Rattus norvegicus (taxid:10116)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 85/287 (29%), Positives = 161/287 (56%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ ++  I + +++   +  Y  TTA  + E +K  +S+  LA+    +   +    +
Sbjct:    20 MTLVAAAYTIALRYTRTTAEGLYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSE 79

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G T  Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct:   139 SLSKLQWISVFMLCGGVTLVQWKPAQATKVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+A       + D   +  KGFF+GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIAVTLAGTYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
             +  S+V+KY DNI+K +S + A++L+ V SV LFG  ++L+F LG++
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTVASVILFGLQITLSFTLGAL 304

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q3SZP1 SLC35A1 "Solute carrier family 35 (CMP-sialic acid transporter), member A1" [Bos taurus (taxid:9913)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 85/287 (29%), Positives = 160/287 (55%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ ++  + + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    20 MTLVAAAYTVALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGNLGRFKASLRE 79

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G    Q   + + +V+  Q PL G+    V  L SGFAGVY E +
Sbjct:   139 TLSKLQWISVFMLCGGVILVQWKPAQATKVVVEQNPLLGFGAIAVAVLCSGFAGVYFEKV 198

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+    V + + D   +  KGFF GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIVVTLVGVYLSDGAEIKEKGFFFGYTYYVWFVIFLASVGG 257

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
             +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG++
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTL 304

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|Q8WMR9 SLC35A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 86/287 (29%), Positives = 160/287 (55%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ ++  I + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    20 MTLVAAAYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKEAGSLGRFKASLKE 79

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G    Q   + + +V+  Q PL G+    V  L SGFAGVY E +
Sbjct:   139 TLSKLQWISVFMLCGGVILVQWKPAQATKVVVEQNPLLGFGAIAVAVLCSGFAGVYFEKV 198

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+    V + + D   +  KGFF+GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIVVTLVGVYLSDGAEINEKGFFYGYTYYVWFVIFLASVGG 257

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
             +  S+V+KY DNI+K +S + A++L+   SV LFG  ++L F LG++
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTFASVMLFGLQITLTFALGTL 304

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93890	SRF3_CAEEL	No assigned EC number	0.3123	0.9279	0.8396	yes	no
P87041	GMS1_SCHPO	No assigned EC number	0.3094	0.8618	0.8130	yes	no
F4JN00	CSTR4_ARATH	No assigned EC number	0.8495	0.9879	0.9346	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	6e-56
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	3e-23
pfam08449	303	pfam08449, UAA, UAA transporter family	2e-07
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.002

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score =  181 bits (462), Expect = 6e-56
 Identities = 80/216 (37%), Positives = 124/216 (57%), Gaps = 7/216 (3%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +PA +Y ++N L Y   + +DA  YQ+   L I++T +   ++L +KLS  QWA+ +LL 
Sbjct: 22  VPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVLMLGRKLSWYQWASLLLLF 81

Query: 184 CGCTTAQLNSNSDR------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINV 237
            G    QL+  S          Q P  G    +     SGFAGVY E I+K   + +I +
Sbjct: 82  LGVAIVQLDQKSSETNSKRGAEQNPGLGLSAVLAACFTSGFAGVYFEKILKG-SNTSIWI 140

Query: 238 QNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYAD 297
           +N  LY FG+ F  +   + D  A+  KGFF GY+     ++L  A+ G+ V++V+KYAD
Sbjct: 141 RNIQLYFFGIFFALLTCWLYDGSAISEKGFFFGYTAFVWAVVLLQAVGGLVVAVVVKYAD 200

Query: 298 NIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
           NI+K ++TS+A++L+ V SV LF F  +L F LG++
Sbjct: 201 NILKGFATSLAIILSTVASVLLFDFRPTLTFLLGAI 236

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 95.5 bits (238), Expect = 3e-23
 Identities = 65/214 (30%), Positives = 108/214 (50%), Gaps = 8/214 (3%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +P  +   +N L       + A G Q+ + L I+ST ++    L   L + QW +  LL 
Sbjct: 4   VPIHIIFKQNNLVLIALGNLLAAGKQVTQ-LKILSTALMTLGSLVASLGDDQWFSLKLLK 62

Query: 184 CGCTTAQLNSNSDRVL--QTPLQGWIMAIVMALLS-GFAGVYTEAIMK-KRPSRNINVQN 239
            G    Q+  +S + L    P+ G + A++ ALLS GFAGVY E I+K           N
Sbjct: 63  LGVAIVQMVQSSAKTLMFGNPVVG-LSAVLSALLSSGFAGVYFEKILKDGDTMFWSR--N 119

Query: 240 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 299
             L +FG+      ++  D   + N GFF GY     ++ L +   G+ +  V++YADN 
Sbjct: 120 LQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYADNT 179

Query: 300 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
            K + T+++++L+ + SV LF   +S  F+LG++
Sbjct: 180 TKSFVTALSIILSTLASVRLFDAKISSTFYLGAI 213

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 41/224 (18%), Positives = 87/224 (38%), Gaps = 20/224 (8%)

Query: 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFIL 181
           Y +    + + ++L      Y+  P + I K+  +I   +L  +I  K+ S +Q+ + +L
Sbjct: 67  YVLIVATFFLSSVLNNEALKYISYPTHVIFKSCKLIPVMILGILIYGKRYSSLQYLSALL 126

Query: 182 LCCGCTTAQLNSNSDRVLQ-----TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNIN 236
           +  G     L S  D         +   G  +     L+    G   E + KK    +  
Sbjct: 127 ITLGVIIFTLASAKDSKNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYKKYGKHSKE 186

Query: 237 VQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT-----VLMILNHALSGIA--- 288
           +  F+ ++  + F  + ++            F   SF       +  +L ++L+      
Sbjct: 187 MM-FYSHLLSLPFFLLGLLDIR-----TGLLFSAESFCLRHPSVLFYLLLNSLTQYVGQF 240

Query: 289 -VSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG 331
            V  ++     +     T++   ++ ++SV LFG  L+L  +LG
Sbjct: 241 FVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLG 284

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 43/292 (14%), Positives = 91/292 (31%), Gaps = 17/292 (5%)

Query: 43  NWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWN 102
             +   +  LAL +      +  +  K A +       A  L   +   L L  L     
Sbjct: 1   MKRALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPR 60

Query: 103 HEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVL 162
                           +++  +  +   +  LL +    Y  A    ++  L  + T +L
Sbjct: 61  G-------LRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALL 113

Query: 163 YRIIL-KKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGV 221
             ++L  ++LS +Q    +L   G     L           L G ++A+  ALL      
Sbjct: 114 AVLLLLGERLSLLQILGILLALAGVLLILLGGGGG--GILSLLGLLLALAAALLWALYTA 171

Query: 222 YTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILN 281
             + + +  P          L +  +      +                +  +  L + +
Sbjct: 172 LVKRLSRLGPV--TLALLLQLLLALLLLLLFFLSGFGAPI-----LSRAWLLLLYLGVFS 224

Query: 282 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM 333
             L+ +     ++     +    + +  +  A++ V L G  LS A  LG+ 
Sbjct: 225 TGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAA 276

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	100.0
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.93
PLN00411	358	nodulin MtN21 family protein; Provisional	99.9
PRK15430	296	putative chloramphenical resistance permease RarD;	99.88
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.88
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.87
PRK11272	292	putative DMT superfamily transporter inner membran	99.87
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.86
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.86
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.86
PRK11689	295	aromatic amino acid exporter; Provisional	99.85
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.83
KOG1581	327	consensus UDP-galactose transporter related protei	99.82
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.81
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.79
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.77
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.73
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.73
KOG1580	337	consensus UDP-galactose transporter related protei	99.71
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.45
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.37
COG2962	293	RarD Predicted permeases [General function predict	99.35
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.3
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.09
KOG1582	367	consensus UDP-galactose transporter related protei	99.06
KOG2765	416	consensus Predicted membrane protein [Function unk	99.05
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.03
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.0
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.97
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.95
COG2510	140	Predicted membrane protein [Function unknown]	98.88
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.84
KOG2766	336	consensus Predicted membrane protein [Function unk	98.76
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.56
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.53
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.49
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.49
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.48
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.43
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.39
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.39
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.18
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.14
PRK11689	295	aromatic amino acid exporter; Provisional	98.14
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.06
PLN00411	358	nodulin MtN21 family protein; Provisional	98.06
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.97
PRK11272	292	putative DMT superfamily transporter inner membran	97.97
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.94
COG2510	140	Predicted membrane protein [Function unknown]	97.92
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.82
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.75
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.71
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.71
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.65
PRK11431	105	multidrug efflux system protein; Provisional	97.65
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.65
PRK13499	345	rhamnose-proton symporter; Provisional	97.63
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.62
PRK15430	296	putative chloramphenical resistance permease RarD;	97.61
COG2076	106	EmrE Membrane transporters of cations and cationic	97.61
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.56
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.41
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.35
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.19
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.16
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.94
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.93
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.85
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.79
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.23
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.12
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.94
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.77
PF13536	113	EmrE: Multidrug resistance efflux transporter	95.58
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.15
PRK13499	345	rhamnose-proton symporter; Provisional	94.59
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	94.36
KOG1580	337	consensus UDP-galactose transporter related protei	94.04
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.88
COG2962	293	RarD Predicted permeases [General function predict	93.83
KOG1581	327	consensus UDP-galactose transporter related protei	93.78
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	91.83
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	91.63
PRK09541	110	emrE multidrug efflux protein; Reviewed	90.71
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	89.63
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	88.58
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	87.83
PRK10650	109	multidrug efflux system protein MdtI; Provisional	87.3
COG2076	106	EmrE Membrane transporters of cations and cationic	86.82
PRK11431	105	multidrug efflux system protein; Provisional	85.81
KOG4831	125	consensus Unnamed protein [Function unknown]	85.24
KOG4510	346	consensus Permease of the drug/metabolite transpor	83.46
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	82.63
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	81.32
KOG2922	335	consensus Uncharacterized conserved protein [Funct	81.11
KOG2765	416	consensus Predicted membrane protein [Function unk	80.97

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-56  Score=412.10  Aligned_cols=286  Identities=38%  Similarity=0.606  Sum_probs=259.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC--CCCCcccccchhhhh
Q 019956           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNH--EGV--TDDNRLSTTLDEVIV  121 (333)
Q Consensus        46 ~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~--~~~--~~~~~~~~~~~~~~~  121 (333)
                      .+++.++.+++++++.++..|++++.++++|.|++++++.|++|+++|..+++++.++  ++.  ...+.....|++.++
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            7899999999999999999999999889999999999999999999999999654322  111  011122245678999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc---CCC---
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN---SNS---  195 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~---~~~---  195 (333)
                      .++|+++|++||+++|++++|+|+++||+.+|+|+++||++++++|+||++++||.++++++.|++++|.+   +.+   
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999943   211   


Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHH
Q 019956          196 DRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT  275 (333)
Q Consensus       196 ~~~~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  275 (333)
                      +...+++..|...++++|++||+++||+||++|+.+. +.|+||+||+++|++++++..+..|++++.+.|||+||+..+
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~-s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v  253 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNV-SLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV  253 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence            2234578899999999999999999999999999876 899999999999999999999889998888889999999999


Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          276 VLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       276 ~~~i~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      |.+++.+|+||+++++++||+|||.|.|++++++++++++|+.+||.+||..|++|+
T Consensus       254 w~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~  310 (345)
T KOG2234|consen  254 WLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGA  310 (345)
T ss_pred             HHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999996

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=100.00  E-value=1.6e-45  Score=334.55  Aligned_cols=219  Identities=41%  Similarity=0.738  Sum_probs=204.7

Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccC
Q 019956          114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (333)
Q Consensus       114 ~~~~~~~~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~  193 (333)
                      .++|+.+++++||++|++||++.|++++++||++||+++|+|+++||++++++||||++++||.|++++++|+++++.++
T Consensus        12 ~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   12 KSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999764


Q ss_pred             CCC------c------cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019956          194 NSD------R------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDA  261 (333)
Q Consensus       194 ~~~------~------~~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~  261 (333)
                      ..+      +      ...++..|+++++++++++|+++||+||++|+.+. ++|.||+|++++|++++++.....|+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~-s~~~~N~qL~~~gi~~~~~~~~~~~~~~  170 (244)
T PF04142_consen   92 SQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV-SLWIQNMQLYLFGILFNLLALLLSDGSA  170 (244)
T ss_pred             ccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            322      0      12356789999999999999999999999999874 8999999999999999999887888888


Q ss_pred             hhhcCccccchHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhcccC
Q 019956          262 VMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM  333 (333)
Q Consensus       262 ~~~~~~~~g~~~~~~~~i~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~~  333 (333)
                      +.+.|||+||++++|.+++.+++||+++++++||+||+.|.|++.++++++.++|+++||.++|..+++|+.
T Consensus       171 ~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~  242 (244)
T PF04142_consen  171 ISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA  242 (244)
T ss_pred             cccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence            889999999999999999999999999999999999999999999999999999999999999999999974

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00803 nst UDP-galactose transporter

Probab=99.93  E-value=2.5e-25  Score=199.98  Aligned_cols=209  Identities=29%  Similarity=0.441  Sum_probs=188.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCC--ccc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD--RVL  199 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~--~~~  199 (333)
                      +.+|+..|+.+|.+.++++.+.++...+.. |.|++.++++...+++++++..||.++.++..|+..++.++..+  ...
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~   80 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMF   80 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccc
Confidence            578999999999999999999999999999 99999999999999999999999999999999999888664321  112


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHH
Q 019956          200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI  279 (333)
Q Consensus       200 ~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i  279 (333)
                      ++...|..+++.++++++++++|+|+..|+++. +.|.+|+++++++.+.+.......+++...+.+++++++...|..+
T Consensus        81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (222)
T TIGR00803        81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG  159 (222)
T ss_pred             ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence            356789999999999999999999999887654 7999999999999998766665566666667788999999999999


Q ss_pred             HHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          280 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       280 ~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +.++++|+++++++||+|++.|.+++..+++++.++|+++|||+++..+++|+
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~  212 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGA  212 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999986

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.90  E-value=2.3e-21  Score=185.73  Aligned_cols=272  Identities=13%  Similarity=0.118  Sum_probs=191.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhH
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  126 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipa  126 (333)
                      .|..+++.=+.+++..++.|..-++|-   +|....+.|..+..++.+++.+  +++++.   ++.+.+|++...+++.+
T Consensus        14 ~~~~~~~~q~~~~~~~~~~k~a~~~G~---~~~~~~~~R~~iA~l~Ll~~~~--~~~~~~---~~~~~~~~~~~~l~l~g   85 (358)
T PLN00411         14 FLTAMLATETSVVGISTLFKVATSKGL---NIYPFLGYSYLLASLLLLPSLF--FTNRSR---SLPPLSVSILSKIGLLG   85 (358)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHHHHHHHH--HHHHhc---ccCcchHHHHHHHHHHH
Confidence            456666666677777778888765554   4666789999888777666553  222211   11123467777788888


Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHH------hcCccCHHHHHHHHHHHhhhhcccccCCCC----
Q 019956          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII------LKKKLSEIQWAAFILLCCGCTTAQLNSNSD----  196 (333)
Q Consensus       127 lly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~------Lkekls~~qw~al~ll~~Gv~~v~~~~~~~----  196 (333)
                      ++.+.++.+.|.+++|++++..+++.++.|++|+++++++      +|||++++||+++++.++|+.++..+++..    
T Consensus        86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~  165 (358)
T PLN00411         86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA  165 (358)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence            8776788899999999999999999999999999999999      699999999999999999999876432110    


Q ss_pred             ----------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHH-HHHHHHHHHHHHHhhh
Q 019956          197 ----------------RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLY-VFGMAFNAVAIVIQDF  259 (333)
Q Consensus       197 ----------------~~~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~-~~~~~~~~~~~~~~~~  259 (333)
                                      ....+...|.+++++++++||++.+..++..++++.  ....+.+.. +.+..+..+....++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~  243 (358)
T PLN00411        166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKN  243 (358)
T ss_pred             cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccC
Confidence                            001123559999999999999999999999888764  323233333 3333333333322211


Q ss_pred             hhhhhcCccccchHHHHHHHHHHH----HHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          260 DAVMNKGFFHGYSFITVLMILNHA----LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       260 ~~~~~~~~~~g~~~~~~~~i~~~a----~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +..   .....++... ..+++.+    ++..+....+|+.++..........|++++++|++++||++++.+++|+
T Consensus       244 ~~~---~~~~~~~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~  316 (358)
T PLN00411        244 NPS---VWIIHFDITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGG  316 (358)
T ss_pred             Ccc---cceeccchHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            100   0011222222 2233333    3455555677889999999999999999999999999999999999986

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.88  E-value=2.6e-20  Score=174.45  Aligned_cols=264  Identities=13%  Similarity=0.109  Sum_probs=183.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 019956           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (333)
Q Consensus        46 ~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ip  125 (333)
                      +..+..++..+.|+.+.+..|..     ++++|.+.++.|.++..++.+++..  .+++.. ...+..+++++.......
T Consensus         8 ~g~~~~l~a~~~wg~~~~~~k~~-----~~~~~~~~~~~R~~~a~~~l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~   79 (296)
T PRK15430          8 QGVLLALAAYFIWGIAPAYFKLI-----YYVPADEILTHRVIWSFFFMVVLMS--ICRQWS-YLKTLIQTPQKIFMLAVS   79 (296)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHH--HHccHH-HHHHHHcCHHHHHHHHHH
Confidence            34566667788999999999875     3478999999999998765555442  221110 000111234554444566


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhH
Q 019956          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (333)
Q Consensus       126 ally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G  205 (333)
                      ++...+++.+.|++++++|+++.+++.++.|+++++++++++|||++++||.++++.++|+.++..+.+ +    .    
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-~----~----  150 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-S----L----  150 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-C----c----
Confidence            677889999999999999999999999999999999999999999999999999999999998764321 1    1    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHH--HHHHHHHHH
Q 019956          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFI--TVLMILNHA  283 (333)
Q Consensus       206 ~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~i~~~a  283 (333)
                      ....+++++++|++.++.||..++... .....+.+...++.+....  ...+......   ......+  .....+..+
T Consensus       151 ~~~~l~aa~~~a~~~i~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~g~~t~  224 (296)
T PRK15430        151 PIIALGLAFSFAFYGLVRKKIAVEAQT-GMLIETMWLLPVAAIYLFA--IADSSTSHMG---QNPMSLNLLLIAAGIVTT  224 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHHHHHHHHH--HccCCccccc---CCcHHHHHHHHHHHHHHH
Confidence            145778899999999999886432211 2233333333333322111  1111000000   0011111  111222456


Q ss_pred             HHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          284 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       284 ~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ++..+....+|+.++......++..|+++.+++++++||+++..+++|.
T Consensus       225 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~  273 (296)
T PRK15430        225 VPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTF  273 (296)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            7788888999999999999999999999999999999999999999885

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.88  E-value=4.9e-20  Score=173.20  Aligned_cols=246  Identities=20%  Similarity=0.288  Sum_probs=189.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHH
Q 019956           77 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI  156 (333)
Q Consensus        77 ~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~  156 (333)
                      .|....++..+.-.+++.....   ..+.   ++   .+......+.++++++.+.+.+.+.+++|+|.+++++++++|+
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~---~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~  101 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLS---LFKF---PK---SRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKP  101 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH---hccc---cC---CCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHH
Confidence            4777788888887777766552   2111   01   1123345688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCcc-----ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019956          157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRV-----LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP  231 (333)
Q Consensus       157 l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~-----~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~  231 (333)
                      ++|++++++++|||++++||.++++.++|+++....+..+..     ......|+++++++.++.|+.++++||++++++
T Consensus       102 i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~  181 (303)
T PF08449_consen  102 IPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG  181 (303)
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999998765432211     112234999999999999999999999999887


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcCccccchHHHH---HHHHHHHHHhHHHHHHhhhhhhHHHHHHHHH
Q 019956          232 SRNINVQNFWLYVFGMAFNAVAIVIQ-DFDAVMNKGFFHGYSFITV---LMILNHALSGIAVSMVMKYADNIVKVYSTSV  307 (333)
Q Consensus       232 ~~~~~~~n~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~---~~i~~~a~gg~~v~~v~k~~~~i~k~~~~~~  307 (333)
                      . +.+....+..+++.++.++..... .++......+...++...+   ...+.+++|...+....|..++......+++
T Consensus       182 ~-~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~  260 (303)
T PF08449_consen  182 K-SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTL  260 (303)
T ss_pred             C-cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHH
Confidence            6 567777778888888877665541 1111111112223333222   2223677888888888999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcchhhhccc
Q 019956          308 AMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       308 ~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +.++++++|+++||+++++.+++|.
T Consensus       261 Rk~~sillS~~~f~~~~~~~~~~G~  285 (303)
T PF08449_consen  261 RKFLSILLSVIIFGHPLSPLQWIGI  285 (303)
T ss_pred             HHHHHHHHHHHhcCCcCChHHHHHH
Confidence            9999999999999999999999986

; GO: 0055085 transmembrane transport

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.87  E-value=2.4e-19  Score=168.11  Aligned_cols=262  Identities=14%  Similarity=0.115  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHH
Q 019956           49 VVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL  128 (333)
Q Consensus        49 ~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipall  128 (333)
                      +..++.++.|+++.+.+|..    -++.+|...+++|..+..++.+++.    ++++        ..++....+   +++
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~----~~~~~p~~~~~~R~~~a~~~l~~~~----~~~~--------~~~~~~~~~---g~~   67 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVG----LHNMPPLMLAGLRFMLVAFPAIFFV----ARPK--------VPLNLLLGY---GLT   67 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHHHh----cCCC--------CchHHHHHH---HHH
Confidence            45667789999999999986    3468899999999987654433322    2111        112322222   332


Q ss_pred             -HHHHHHHHHHHHHc-CChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhHH
Q 019956          129 -YLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  206 (333)
Q Consensus       129 -y~~~n~l~~~al~~-l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G~  206 (333)
                       +..+..+.|.+++| +|++...++.++.|+++.+++++++|||++++||+++++.++|+.++..++..+  .+....|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--~~~~~~G~  145 (299)
T PRK11453         68 ISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG--QHVAMLGF  145 (299)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC--cchhHHHH
Confidence             34566677889987 789999999999999999999999999999999999999999998876432211  12234699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHHHHHHHh
Q 019956          207 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG  286 (333)
Q Consensus       207 ~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~a~gg  286 (333)
                      ++.+++++++++++++.||..++.+.......+.+....+.+.........+.+..... .+..++...|..+++.++.+
T Consensus       146 ~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~i~~  224 (299)
T PRK11453        146 MLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIH-SLVTIDMTTILSLMYLAFVA  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhh-hhccCCHHHHHHHHHHHHHH
Confidence            99999999999999999998765432111111122222222211111111221110000 01123444555555544444


Q ss_pred             -----HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          287 -----IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       287 -----~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                           .+....+++.++..........|+++.++|++++||+++..+++|+
T Consensus       225 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~  275 (299)
T PRK11453        225 TIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGA  275 (299)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence                 4444555777888888888999999999999999999999999986

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.87  E-value=1.5e-19  Score=168.95  Aligned_cols=256  Identities=13%  Similarity=0.053  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHH
Q 019956           49 VVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL  128 (333)
Q Consensus        49 ~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipall  128 (333)
                      +.+++.++.|+++.+.+|...    ++.+|.+.++.|.....++.+++..  .++++   .    .+.++.....+.+.+
T Consensus        11 ~~~~~~~~iWg~~~~~~K~~~----~~~~p~~~~~~R~~~a~l~ll~~~~--~~~~~---~----~~~~~~~~~~~~g~~   77 (292)
T PRK11272         11 GALFALYIIWGSTYLVIRIGV----ESWPPLMMAGVRFLIAGILLLAFLL--LRGHP---L----PTLRQWLNAALIGLL   77 (292)
T ss_pred             HHHHHHHHHHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHHH--HhCCC---C----CcHHHHHHHHHHHHH
Confidence            456678899999999999873    3568999999999998776655542  22211   1    112333345556655


Q ss_pred             H-HHHHHHHHHHH-HcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhHH
Q 019956          129 Y-LVKNLLQYYIF-AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  206 (333)
Q Consensus       129 y-~~~n~l~~~al-~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G~  206 (333)
                      . ..++.+.+.+. +++++++..++.++.|+++++++.+ +|||++++||.++++.++|+.++..+++.    +....|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----~~~~~G~  152 (292)
T PRK11272         78 LLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----SGNPWGA  152 (292)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc----ccchHHH
Confidence            4 56888999999 9999999999999999999999985 79999999999999999999887543221    1335799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHH-----HH
Q 019956          207 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI-----LN  281 (333)
Q Consensus       207 ~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i-----~~  281 (333)
                      ++.+++++++|+++++.||..+++   +......++...+.+.... ....+.. .     ....+...|..+     +.
T Consensus       153 l~~l~a~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-----~~~~~~~~~~~i~~l~i~~  222 (292)
T PRK11272        153 ILILIASASWAFGSVWSSRLPLPV---GMMAGAAEMLAAGVVLLIA-SLLSGER-L-----TALPTLSGFLALGYLAVFG  222 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHH-HHHcCCc-c-----cccCCHHHHHHHHHHHHHH
Confidence            999999999999999999875432   2333333433333333222 2211111 0     001122333333     34


Q ss_pred             HHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          282 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       282 ~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ++++..+....+|+.++..........|+++.+++++++||++|..+++|+
T Consensus       223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~  273 (292)
T PRK11272        223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLAL  273 (292)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            455556666777888888888889999999999999999999999999985

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.86  E-value=2.6e-19  Score=168.77  Aligned_cols=264  Identities=17%  Similarity=0.221  Sum_probs=191.3

Q ss_pred             HHHHHhHHHHHHH-HhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 019956           54 LTVLTSSQAILIV-WSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK  132 (333)
Q Consensus        54 l~l~~~~~~ll~~-~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~~  132 (333)
                      +.++.++...... .+++ |- + -|..-.+..++.-.++-.....  +|++..   +......++.++|.+.|+++...
T Consensus        21 lsl~~~~t~~~s~~l~~~-~~-~-~P~~Qs~~~Y~~l~~vy~~~~~--~r~~~~---~~~~~~~~~~w~y~lla~~Dv~a   92 (334)
T PF06027_consen   21 LSLCITGTGTFSSLLANK-GV-N-IPTFQSFFNYVLLALVYTPILL--YRRGFK---KWLKVLKRPWWKYFLLALLDVEA   92 (334)
T ss_pred             HHHHHHhHHHHHHHHHhc-Cc-c-CcHHHHHHHHHHHHHHHhhhhh--hccccc---cchhhcchhHHHHHHHHHHHHHH
Confidence            4444444444443 3433 22 2 2555566666554333222221  332211   11111235567899999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCC----CCccccchhhHHHH
Q 019956          133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN----SDRVLQTPLQGWIM  208 (333)
Q Consensus       133 n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~----~~~~~~~~~~G~~l  208 (333)
                      |.+...|++|++.+..|++.++.++++.++|+++||+|+++.||+|+++.+.|+.++...+.    ++...+++..|+++
T Consensus        93 N~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll  172 (334)
T PF06027_consen   93 NYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLL  172 (334)
T ss_pred             HHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHH
Confidence            99999999999999999999999999999999999999999999999999999888765532    11234578899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHH----HHHH
Q 019956          209 AIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL----NHAL  284 (333)
Q Consensus       209 ~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~----~~a~  284 (333)
                      +++++++.|+++|+.|+..|+.+   ......++.++|.+++.+.....|+++..+.    .|++..+...+    ...+
T Consensus       173 ~l~~a~lya~~nV~~E~~v~~~~---~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~----~w~~~~~~~~v~~~~~lf~  245 (334)
T PF06027_consen  173 ALLGAILYAVSNVLEEKLVKKAP---RVEFLGMLGLFGFIISGIQLAILERSGIESI----HWTSQVIGLLVGYALCLFL  245 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHheehhhhhcc----CCChhhHHHHHHHHHHHHH
Confidence            99999999999999999998765   3444567788998888876665666554431    12333222221    2344


Q ss_pred             HhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          285 SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       285 gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ...++..++++.++...+.....+.+++.+.++++||+++++..++|.
T Consensus       246 ~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af  293 (334)
T PF06027_consen  246 FYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAF  293 (334)
T ss_pred             HHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHH
Confidence            556778889999999888888889999999999999999999888763

Some of the sequences in this family are annotated as putative membrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.86  E-value=1.5e-18  Score=166.25  Aligned_cols=247  Identities=13%  Similarity=0.146  Sum_probs=171.9

Q ss_pred             cch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc-hhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 019956           75 EYS-VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTL-DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILK  152 (333)
Q Consensus        75 ~~~-~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~ipally~~~n~l~~~al~~l~~~~~~vl~  152 (333)
                      .++ |.+...++.++..+++..+..  .+.+   ..++. .++ ++.......|+++...+...+.++++.+++.+++++
T Consensus        74 ~~~~P~~l~~~~~~~~~l~~~~~~~--~~~~---~~~~~-~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iik  147 (350)
T PTZ00343         74 MLPLPWTISSLQLFVGWLFALLYWA--TGFR---KIPRI-KSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVK  147 (350)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHH--hCCC---CCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            356 999999999988766544321  1111   11221 112 234456677777777777788999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 019956          153 NLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS  232 (333)
Q Consensus       153 ~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~  232 (333)
                      .+.|++|++++++++|||+++++|.++++.++|+.+...++.     +....|+++.+++++++++++++.||.+++.+.
T Consensus       148 a~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~  222 (350)
T PTZ00343        148 AAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-----HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSE  222 (350)
T ss_pred             HhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999999999999764311     123569999999999999999999999876431


Q ss_pred             C--chHHHHHHH--HHHHHHHHHHHHHHhhhhhhhh---c--CccccchH-HHHHHHHHHHHHhHHHH----HHhhhhhh
Q 019956          233 R--NINVQNFWL--YVFGMAFNAVAIVIQDFDAVMN---K--GFFHGYSF-ITVLMILNHALSGIAVS----MVMKYADN  298 (333)
Q Consensus       233 ~--~~~~~n~~l--~~~~~~~~~~~~~~~~~~~~~~---~--~~~~g~~~-~~~~~i~~~a~gg~~v~----~v~k~~~~  298 (333)
                      .  +....|.+.  ...|.++.++.....|+.....   .  ..+..+.. ..+..++.+++.+.+..    +.+++.++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~  302 (350)
T PTZ00343        223 IGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQ  302 (350)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            0  111223333  4466666665544333211100   0  00111111 12223334444444444    47788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          299 IVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       299 i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +....+..+.+++++++|+++|||++|..+++|.
T Consensus       303 ~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~  336 (350)
T PTZ00343        303 VTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGM  336 (350)
T ss_pred             hHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHH
Confidence            9999999999999999999999999999999986

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.86  E-value=2.4e-19  Score=164.08  Aligned_cols=249  Identities=14%  Similarity=0.119  Sum_probs=178.4

Q ss_pred             HhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHH-HHHHHHHH
Q 019956           58 TSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLLQ  136 (333)
Q Consensus        58 ~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipall-y~~~n~l~  136 (333)
                      |+...+..|+.-++   ..++....+.|-+...++..+..   +++ .      .   .++...+.+.+.+ ..+++.+.
T Consensus         1 Wg~~~~~~k~~~~~---~~~~~~~~~~r~~~~~l~l~~~~---~~~-~------~---~~~~~~~~~~~~~~~~l~~~~~   64 (260)
T TIGR00950         1 WGTTGVVIGQYLEG---QVPLYFAVFRRLIFALLLLLPLL---RRR-P------P---LKRLLRLLLLGALQIGVFYVLY   64 (260)
T ss_pred             CcchHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---Hhc-c------C---HhHHHHHHHHHHHHHHHHHHHH
Confidence            67788888886432   34677777877777655544443   222 1      1   1122234444444 57899999


Q ss_pred             HHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhHHHHHHHHHHHH
Q 019956          137 YYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLS  216 (333)
Q Consensus       137 ~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G~~l~l~aa~~s  216 (333)
                      |.|++|+|+++..++.++.|+++++++.+++|||++++||.++.+.++|+.++..+++.    +....|+.+.+++++++
T Consensus        65 ~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~----~~~~~G~~~~l~a~~~~  140 (260)
T TIGR00950        65 FVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL----SINPAGLLLGLGSGISF  140 (260)
T ss_pred             HHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc----cccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988654321    24567999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchH--HHHHHHHHHHHHhHHHHHHhh
Q 019956          217 GFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSF--ITVLMILNHALSGIAVSMVMK  294 (333)
Q Consensus       217 ala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~i~~~a~gg~~v~~v~k  294 (333)
                      ++++++.|+..++.+. +....+.+....+.++..+.....+.+ ..    .+...+  ..+..++.+.++..+....+|
T Consensus       141 a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  214 (260)
T TIGR00950       141 ALGTVLYKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAWFLGPN-PQ----ALSLQWGALLYLGLIGTALAYFLWNKGLT  214 (260)
T ss_pred             HHHHHHHhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998876543 222222233444544444433222111 00    111111  222333455667777888899


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       295 ~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +.+...........|+++++++++++||+++..+++|.
T Consensus       215 ~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~  252 (260)
T TIGR00950       215 LVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGG  252 (260)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999885

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.85  E-value=6.1e-19  Score=165.16  Aligned_cols=257  Identities=12%  Similarity=0.103  Sum_probs=178.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhH
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  126 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipa  126 (333)
                      .++..++.++.|+++.+..|..    .++++|....++|..+..++.+++.    ++.+      .++.++..  ...-+
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~----~~~~~P~~~~~~R~~~a~l~l~~~~----~~~~------~~~~~~~~--~~~~~   68 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGV----SESLGPVGGAAMIYSVSGLLLLLTV----GFPR------LRQFPKRY--LLAGG   68 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH----HccCChHHHHHHHHHHHHHHHHHHc----cccc------cccccHHH--HHHHh
Confidence            4566777889999999999987    5678899999999888765544332    1111      11112221  22234


Q ss_pred             HHHHHHHHHHHHHHH----cCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCc-----
Q 019956          127 VLYLVKNLLQYYIFA----YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR-----  197 (333)
Q Consensus       127 lly~~~n~l~~~al~----~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~-----  197 (333)
                      +.++.++.+.|.+++    ++++.+..++..+.|+++++++++++|||++++||.++++.++|+.++..++.+.+     
T Consensus        69 l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~  148 (295)
T PRK11689         69 LLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELI  148 (295)
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhh
Confidence            445677888888775    46888899999999999999999999999999999999999999988865432110     


Q ss_pred             -cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHH
Q 019956          198 -VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITV  276 (333)
Q Consensus       198 -~~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  276 (333)
                       .......|+++.+++++++|+++++.||..++.+.  ..   ......+..+ .+.....+ +..      ...++..|
T Consensus       149 ~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~--~~---~~~~~~~~~l-~~~~~~~~-~~~------~~~~~~~~  215 (295)
T PRK11689        149 NNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG--IT---LFFILTALAL-WIKYFLSP-QPA------MVFSLPAI  215 (295)
T ss_pred             hccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc--hh---HHHHHHHHHH-HHHHHHhc-Ccc------ccCCHHHH
Confidence             01123469999999999999999999998655442  21   1111222222 22111111 111      11233333


Q ss_pred             HHHH----HHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          277 LMIL----NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       277 ~~i~----~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ..++    ..+++..+....+|+.++.......+..|+++++++++++||+++..+++|.
T Consensus       216 ~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~  275 (295)
T PRK11689        216 IKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGV  275 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            3333    3445566677788999999999999999999999999999999999999986

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.83  E-value=3.4e-18  Score=160.46  Aligned_cols=261  Identities=12%  Similarity=0.160  Sum_probs=174.8

Q ss_pred             HHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHH
Q 019956           56 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLL  135 (333)
Q Consensus        56 l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~~n~l  135 (333)
                      ..+.+..+..|+.-++  . -.|....+.+.....+++.+.    ++...   .++.+.++++.......|++.+.++.+
T Consensus        12 ~~~~~~~~~NK~~l~~--~-~~P~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~   81 (302)
T TIGR00817        12 FLNVYFNIYNKKLLNV--F-PYPYFKTLISLAVGSLYCLLS----WSSGL---PKRLKISSALLKLLLPVAIVHTIGHVT   81 (302)
T ss_pred             HHHHHHHHHHHHHHhh--C-ChhHHHHHHHHHHHHHHHHHH----HHhCC---CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566665432  1 237777788877765554333    21111   111112345555677778888889999


Q ss_pred             HHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhHHHHHHHHHHH
Q 019956          136 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALL  215 (333)
Q Consensus       136 ~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G~~l~l~aa~~  215 (333)
                      .+.+++|+++++++++.++.|+++++++++++|||+++++|.++++.++|+.+...+ +.    +....|+++.++++++
T Consensus        82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~-~~----~~~~~G~~~~l~a~~~  156 (302)
T TIGR00817        82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT-EL----SFNWAGFLSAMISNIT  156 (302)
T ss_pred             HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC-cc----cccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999875322 11    1235699999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccc---cch-HHHHHHHHHHHHH-h----
Q 019956          216 SGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFH---GYS-FITVLMILNHALS-G----  286 (333)
Q Consensus       216 sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~-~~~~~~i~~~a~g-g----  286 (333)
                      +++++++.||..++.+. +....+.+....+.++.++.....+..+.......+   ..+ ...+..++..+++ .    
T Consensus       157 ~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (302)
T TIGR00817       157 FVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQ  235 (302)
T ss_pred             HHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999873221 223333444555665555544333221111100000   001 1122222222221 1    


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       287 ~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      .+....+|+.++..........+++++++|++++||++|..+++|+
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~  281 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGT  281 (302)
T ss_pred             HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHH
Confidence            2223468899999999999999999999999999999999999986

specificities overlap.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1e-17  Score=151.93  Aligned_cols=249  Identities=16%  Similarity=0.241  Sum_probs=203.1

Q ss_pred             Cccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 019956           73 KYEY-SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL  151 (333)
Q Consensus        73 ~~~~-~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~~n~l~~~al~~l~~~~~~vl  151 (333)
                      +++| ++.-.+++..+..++++..++.  +++...       ...+.+..|...++...+...++|.|++|++-++..+.
T Consensus        45 ~~rF~~~~fL~~~q~l~~~~~s~~~l~--~~k~~~-------~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~La  115 (327)
T KOG1581|consen   45 GERFEHSLFLVFCQRLVALLVSYAMLK--WWKKEL-------SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLA  115 (327)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHh--cccccC-------CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHH
Confidence            3444 5666779999999999977763  332211       12344556888899999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCc----cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 019956          152 KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR----VLQTPLQGWIMAIVMALLSGFAGVYTEAIM  227 (333)
Q Consensus       152 ~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~----~~~~~~~G~~l~l~aa~~sala~v~~e~~l  227 (333)
                      +++|.+.++++..++.|+|++..+.+..++...||.+....+++++    ...+..+|+.++...-+.+|+.+..+++++
T Consensus       116 KscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf  195 (327)
T KOG1581|consen  116 KSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLF  195 (327)
T ss_pred             HHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh
Confidence            9999999999999999999999999999999999999876544332    234677899999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHH---HHHHHhHHHHHHhhhhhhHHHHHH
Q 019956          228 KKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL---NHALSGIAVSMVMKYADNIVKVYS  304 (333)
Q Consensus       228 k~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~---~~a~gg~~v~~v~k~~~~i~k~~~  304 (333)
                      |++.. +.+.++..+.+|+.+.+....+.. +.......|...|+...+-+.+   ++++|+.++.+.++..++++-...
T Consensus       196 ~~~k~-s~~~mM~~vNLf~~i~~~~~li~q-g~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I  273 (327)
T KOG1581|consen  196 KKYKV-SSLHMMFGVNLFSAILNGTYLILQ-GHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTI  273 (327)
T ss_pred             ccCCc-cHhHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHH
Confidence            97765 677778888999999998886533 2211222344455665655554   689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          305 TSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       305 ~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +..+-++++.+|.+.||++++..+++|.
T Consensus       274 ~ttRk~~si~lS~i~f~h~~s~~q~~g~  301 (327)
T KOG1581|consen  274 MTTRKMVSIMLSCIVFGHPLSSEQWLGV  301 (327)
T ss_pred             HHHHHHHHHHHHHHHhCCccchhhccCe
Confidence            9999999999999999999999999985

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.81  E-value=4.2e-17  Score=152.61  Aligned_cols=257  Identities=13%  Similarity=-0.019  Sum_probs=180.3

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhh
Q 019956           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (333)
Q Consensus        45 ~~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  124 (333)
                      .+.+..+++.++.++++...+|+.    -.+++|...++.|.++..++.+++.   .+++.     +  .++++......
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~----~~~~~~~~~~~~R~~~a~l~l~~~~---~~~~~-----~--~~~~~~~~~~~   76 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSL----FPLVGAPGVTALRLALGTLILIAIF---KPWRL-----R--FAKEQRLPLLF   76 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHH----HHHcCHHHHHHHHHHHHHHHHHHHH---hHHhc-----c--CCHHHHHHHHH
Confidence            456778888889999999999987    3458899999999999876665543   22111     1  11233333455


Q ss_pred             hHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhh
Q 019956          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ  204 (333)
Q Consensus       125 pally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~  204 (333)
                      .++++...+.+.|++++|+|++...++..+.|+++++++.    ||.+..+  ++.+.++|+.++..++.+.  .+....
T Consensus        77 ~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~--~~~i~~~Gv~li~~~~~~~--~~~~~~  148 (293)
T PRK10532         77 YGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFV--WVVLAVLGLWFLLPLGQDV--SHVDLT  148 (293)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHH--HHHHHHHHHheeeecCCCc--ccCChH
Confidence            6667788899999999999999999999999999998873    5555444  4566789988765332211  122357


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcccc--chHHHHHHHHHH
Q 019956          205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHG--YSFITVLMILNH  282 (333)
Q Consensus       205 G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~i~~~  282 (333)
                      |+++.+++++++|++.++.||..++.+.  .. ...+ .+.+.+...+.....+.+ .    ..+.  +....++.++.+
T Consensus       149 G~ll~l~aa~~~a~~~v~~r~~~~~~~~--~~-~~~~-~~~~~~~l~~~~~~~~~~-~----~~~~~~~~~~l~lgv~~t  219 (293)
T PRK10532        149 GAALALGAGACWAIYILSGQRAGAEHGP--AT-VAIG-SLIAALIFVPIGALQAGE-A----LWHWSILPLGLAVAILST  219 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCc--hH-HHHH-HHHHHHHHHHHHHHccCc-c----cCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998766542  22 2333 233333333322222110 0    0110  111234555566


Q ss_pred             HHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          283 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       283 a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      .++..+....+++.++.......+..|++++++|+++|||+++..+++|+
T Consensus       220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~  269 (293)
T PRK10532        220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLAL  269 (293)
T ss_pred             HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            66677777888999999999999999999999999999999999999986

>TIGR00688 rarD rarD protein

Probab=99.79  E-value=5.6e-17  Score=148.63  Aligned_cols=249  Identities=14%  Similarity=0.058  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccch-hhhhhhh
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLD-EVIVYPI  124 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~-~~~~-~~~~~~i  124 (333)
                      .++..++.++.|+.+.+..|+.     .+.+|.+.++.|.++..++.+++..  .++++...+++.+ .+++ ......+
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-----~~~~~~~i~~~R~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-----KPLPATDILGHRMIWSFPFMLLSVT--LFRQWAALIERLKRIQKRPLILSLLL   75 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHhCcccchHHHHHHH
Confidence            4456677788999999999974     2378999999999987655444331  1111100001111 1112 2345677


Q ss_pred             hHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhh
Q 019956          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ  204 (333)
Q Consensus       125 pally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~  204 (333)
                      .+++..+++.+.+++++++|+++.+++.++.|+++++++++++|||++++||.++++.++|+.++..+++ +    ..  
T Consensus        76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-~----~~--  148 (256)
T TIGR00688        76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-S----LP--  148 (256)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-C----ch--
Confidence            8888889999999999999999999999999999999999999999999999999999999988754321 1    11  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHH--HHHHH
Q 019956          205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL--MILNH  282 (333)
Q Consensus       205 G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~i~~~  282 (333)
                        .+.++++++++++.++.|+..+++.. ...    ...+...++........++....+   ......+.++  ..+..
T Consensus       149 --~~~l~aa~~~a~~~i~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~t  218 (256)
T TIGR00688       149 --WEALVLAFSFTAYGLIRKALKNTDLA-GFC----LETLSLMPVAIYYLLQTDFATVQQ---TNPFPIWLLLVLAGLIT  218 (256)
T ss_pred             --HHHHHHHHHHHHHHHHHhhcCCCCcc-hHH----HHHHHHHHHHHHHHHHhccCcccc---cCchhHHHHHHHHHHHH
Confidence              35688999999999999986432211 111    101112222221111112211000   0011112221  11246


Q ss_pred             HHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019956          283 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFL  319 (333)
Q Consensus       283 a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~l  319 (333)
                      .++..+....+|+.++......++..|+++.++++++
T Consensus       219 ~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       219 GTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            7788888899999999999999999999999999875

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.77  E-value=3.8e-17  Score=146.42  Aligned_cols=278  Identities=19%  Similarity=0.251  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhc---cC----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc----c--ccc
Q 019956           49 VVTLALTVLTSSQAILIVWSKR---AG----KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNR----L--STT  115 (333)
Q Consensus        49 ~~l~ll~l~~~~~~ll~~~s~~---~~----~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~----~--~~~  115 (333)
                      ++-++++.-.+.|.++.||+.+   +|    ++++-.+..+|+.|+..+.+-..+-   .|.++.+....    +  .++
T Consensus         6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir---~~sn~~g~~s~~~~ilsq~~~   82 (372)
T KOG3912|consen    6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR---LRSNGQGVSSDLDSILSQDSS   82 (372)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCcccccccccccccC
Confidence            4455666777889999999774   33    3456677788999988554433322   33333221110    0  111


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccC--
Q 019956          116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS--  193 (333)
Q Consensus       116 ~~~~~~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~--  193 (333)
                      +-+...+..|+++......+.|+|+.+++++.||++....++||++++..+||++++.+||+++....+|++++...+  
T Consensus        83 pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~  162 (372)
T KOG3912|consen   83 PFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH  162 (372)
T ss_pred             CCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecc
Confidence            223345666999999999999999999999999999999999999999999999999999999999999999887541  


Q ss_pred             -CCC--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHH-HHHHHHh---hhhhh--hh
Q 019956          194 -NSD--RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFN-AVAIVIQ---DFDAV--MN  264 (333)
Q Consensus       194 -~~~--~~~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~-~~~~~~~---~~~~~--~~  264 (333)
                       .++  +..++...|+++++.+.++-|+.-|+.||.+|+++..+... --+-.+||.++. ++.....   .++..  ..
T Consensus       163 ~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~a-vg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~  241 (372)
T KOG3912|consen  163 LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQA-VGWEGLFGLVILSLLAIPMYYIPSGDSFSCNP  241 (372)
T ss_pred             cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHH-hhhhhhHHHHHHHHHHHHHhheecCCcCcCCC
Confidence             222  12346778999999999999999999999999987633333 334467774433 3322211   11111  11


Q ss_pred             cCccccchHHHHH-----HHHHHHHHhHHHHH---------HhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhc
Q 019956          265 KGFFHGYSFITVL-----MILNHALSGIAVSM---------VMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFL  330 (333)
Q Consensus       265 ~~~~~g~~~~~~~-----~i~~~a~gg~~v~~---------v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~l  330 (333)
                      .|.++.|.. +|.     ..+..+.+|..++.         +-|+.++..+.....++..+-.+++..+..|.....++.
T Consensus       242 ~g~~eD~~~-~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqil  320 (372)
T KOG3912|consen  242 RGVLEDWGD-AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQIL  320 (372)
T ss_pred             CcchhhHHH-HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence            222222211 111     11233444444443         347777777778888888888888888888888888887


Q ss_pred             c
Q 019956          331 G  331 (333)
Q Consensus       331 G  331 (333)
                      |
T Consensus       321 G  321 (372)
T KOG3912|consen  321 G  321 (372)
T ss_pred             H
Confidence            7

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.73  E-value=1.1e-15  Score=142.00  Aligned_cols=204  Identities=14%  Similarity=0.100  Sum_probs=140.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQT  201 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~  201 (333)
                      ...-++....++.+.+.++++.|+++...+.++.|+++++++++++|||++++||.|+.+.+.|+.++..++...    .
T Consensus        66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~----~  141 (281)
T TIGR03340        66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ----H  141 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc----c
Confidence            444555678899999999999999999999999999999999999999999999999999999999876432211    2


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ch-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHH
Q 019956          202 PLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR-NI-NVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI  279 (333)
Q Consensus       202 ~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~-~~-~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i  279 (333)
                      ...|+.+.++++++++++++..|+..++.++. +. .....+....+.++..... ..+.......  ...+-...+...
T Consensus       142 ~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~  218 (281)
T TIGR03340       142 RRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYL-KRHGRSMFPY--ARQILPSATLGG  218 (281)
T ss_pred             chhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHH-HHhccchhhh--HHHHHHHHHHHH
Confidence            23588889999999999999888764433211 11 1111111111122211111 1111100000  000011233344


Q ss_pred             HHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          280 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       280 ~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +..+++..+....+++.++.......+.+|+++.++|++++||+++..+++|.
T Consensus       219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~  271 (281)
T TIGR03340       219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGV  271 (281)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            45566666777778888877777778889999999999999999999999985

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.73  E-value=1.6e-14  Score=133.14  Aligned_cols=267  Identities=15%  Similarity=0.153  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhH
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  126 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipa  126 (333)
                      .....++..+.|+......|....+   +.++....+.+......+.+...   .++..  ...+..  .+........+
T Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~--~~~~~~~~~~~   77 (292)
T COG0697           8 GLLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLL---LLEPR--GLRPAL--RPWLLLLLLAL   77 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHH---Hhhcc--cccccc--cchHHHHHHHH
Confidence            4455556668888888887775333   34555656667777666622222   12111  011111  11123355556


Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHH-HHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhH
Q 019956          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (333)
Q Consensus       127 lly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~-l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G  205 (333)
                      +.....+.+.+.++++++++...++.++.|+++++++. +++|||+++++|.++++.++|+.++..++..+...  +..|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--~~~g  155 (292)
T COG0697          78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--SLLG  155 (292)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--HHHH
Confidence            66788999999999999999999999999999999997 77799999999999999999999998764433111  5689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHHHHHHH
Q 019956          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS  285 (333)
Q Consensus       206 ~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~a~g  285 (333)
                      +.+.++++++++++.++.|+.. +.+.  ....-.+... +...........+..   .......+....+..++..+++
T Consensus       156 ~~~~l~a~~~~a~~~~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~i~  228 (292)
T COG0697         156 LLLALAAALLWALYTALVKRLS-RLGP--VTLALLLQLL-LALLLLLLFFLSGFG---APILSRAWLLLLYLGVFSTGLA  228 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCCh--HHHHHHHHHH-HHHHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987 3221  1111101111 111111111111110   0000111222333444445567


Q ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          286 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       286 g~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ..+....+++.++..........++++.+++++++||+++..+++|+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~  275 (292)
T COG0697         229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGA  275 (292)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            77777888888888888888999999999999999999999999985

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.71  E-value=5e-17  Score=142.39  Aligned_cols=212  Identities=15%  Similarity=0.173  Sum_probs=170.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCC--C
Q 019956          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNS--D  196 (333)
Q Consensus       119 ~~~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~--~  196 (333)
                      ...|+..++.|.+.+.-...|++|+|.++..+-.++||+.+.++.+++.+++++++++.++++..+||++....++.  +
T Consensus        85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g  164 (337)
T KOG1580|consen   85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG  164 (337)
T ss_pred             chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999887432  2


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHH
Q 019956          197 RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITV  276 (333)
Q Consensus       197 ~~~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  276 (333)
                      ..+.....|.++.+++-...|+.++.+|++-+.+..++ .-.+..+.+|+.+....+++ ..++..+-..|-+.|+...|
T Consensus       165 ~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g-~~MM~~~NlwStL~Lg~g~l-fTGElweF~yF~~RhP~~~~  242 (337)
T KOG1580|consen  165 AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTG-TSMMFYTNLWSTLYLGAGLL-FTGELWEFFYFVQRHPYVFW  242 (337)
T ss_pred             CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCc-hhhHHHHHHHHHHHhhhhhe-ehhhHHHHHHHHHhccHHHH
Confidence            22346678999999999999999999999977755432 22335667788877666554 22221111112234444333


Q ss_pred             ---HHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          277 ---LMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       277 ---~~i~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                         +..+..++|++++...+.+.+.......++..-.+|++.|+++|+++++..+|+|+
T Consensus       243 ~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgt  301 (337)
T KOG1580|consen  243 DLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGT  301 (337)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence               23347889999999999999999999999999999999999999999999999986

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.45  E-value=1.1e-10  Score=109.07  Aligned_cols=259  Identities=11%  Similarity=0.102  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 019956           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (333)
Q Consensus        48 ~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipal  127 (333)
                      +++.++-++.|++.++..|..+     ..++...+  +..+...+....... .+ +.   +   ...++....-.+.++
T Consensus         3 ~l~~lia~~~wGs~g~~~k~~~-----g~~~~~~~--~~~~g~l~~~~~~~~-~~-~~---~---~~~~~~~~~g~l~G~   67 (290)
T TIGR00776         3 ILIALIPALFWGSFVLINVKIG-----GGPYSQTL--GTTFGALILSIAIAI-FV-LP---E---FWALSIFLVGLLSGA   67 (290)
T ss_pred             hHHHHHHHHHHhhhHHHHhccC-----CCHHHHHH--HHHHHHHHHHHHHHH-Hh-CC---c---ccccHHHHHHHHHHH
Confidence            3455566889999999988764     22333333  332222222222110 22 11   1   111233333445566


Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHh-hHHHHHHHHHHHHhcCccCHHH----HHHHHHHHhhhhcccccCCCCcc-c--
Q 019956          128 LYLVKNLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQ----WAAFILLCCGCTTAQLNSNSDRV-L--  199 (333)
Q Consensus       128 ly~~~n~l~~~al~~l~~~~~~vl~~-~k~l~talls~l~Lkekls~~q----w~al~ll~~Gv~~v~~~~~~~~~-~--  199 (333)
                      +..+.|.+++.+.++++.++...+.+ +.++..++++.+++|||.++++    +.|+++.++|+.++...++++.. .  
T Consensus        68 ~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~  147 (290)
T TIGR00776        68 FWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSE  147 (290)
T ss_pred             HHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccc
Confidence            68899999999999999999999999 9999999999999999999999    99999999999988654322111 0  


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHH--HHH
Q 019956          200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFI--TVL  277 (333)
Q Consensus       200 ~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~  277 (333)
                      .+...|+++.++++++.+++.+..|+. +..+.+..+.+..-+.+.+.+++.+..   +.+ +     +...+.+  ...
T Consensus       148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~-~-----~~~~~~~~~~~~  217 (290)
T TIGR00776       148 FNFKKGILLLLMSTIGYLVYVVVAKAF-GVDGLSVLLPQAIGMVIGGIIFNLGHI---LAK-P-----LKKYAILLNILP  217 (290)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHc-CCCcceehhHHHHHHHHHHHHHHHHHh---ccc-c-----hHHHHHHHHHHH
Confidence            233569999999999999999999976 222211122233333445554444320   000 0     0010111  112


Q ss_pred             HHHHHHHHhHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhh----ccc
Q 019956          278 MILNHALSGIAVSMVMK-YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFF----LGS  332 (333)
Q Consensus       278 ~i~~~a~gg~~v~~v~k-~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~----lG~  332 (333)
                      .++ ..++..+.....+ +.+...-...++..|+.+++.+++++||+.+..++    +|.
T Consensus       218 Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~  276 (290)
T TIGR00776       218 GLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGI  276 (290)
T ss_pred             HHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHH
Confidence            222 3445444444456 77777777778899999999999999999999988    774

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.37  E-value=5.9e-13  Score=119.03  Aligned_cols=203  Identities=12%  Similarity=0.140  Sum_probs=146.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCC----C--
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN----S--  195 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~----~--  195 (333)
                      +.++++.-+....+.|++++|++.+.+.++..+.|.+|.++++.+|||++|+..-++..+.+.||.++..++.    .  
T Consensus       100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~  179 (346)
T KOG4510|consen  100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTE  179 (346)
T ss_pred             EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcc
Confidence            4556777778889999999999999999999999999999999999999999999999999999999987741    1  


Q ss_pred             --Cccc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhcCcccc
Q 019956          196 --DRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS-RNINVQNFWLYVFGMAFNAVAIV-IQDFDAVMNKGFFHG  270 (333)
Q Consensus       196 --~~~~-~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~-~~~~~~n~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~g  270 (333)
                        +... ....+|.+..+.+++..+-.-+..|++-|+.+. -+++    +....+.+..++... ..+++.+..     |
T Consensus       180 g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvs----yf~~i~lV~s~I~~~~ig~~~lP~c-----g  250 (346)
T KOG4510|consen  180 GEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVS----YFSLITLVVSLIGCASIGAVQLPHC-----G  250 (346)
T ss_pred             ccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEeh----HHHHHHHHHHHHHHhhccceecCcc-----c
Confidence              1111 245678888888888877777888888777442 1233    222333333333322 122222210     1


Q ss_pred             chHHHH-HHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhcccC
Q 019956          271 YSFITV-LMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSM  333 (333)
Q Consensus       271 ~~~~~~-~~i~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~~  333 (333)
                      .+++.. ..-+..-+|++++.+-+....+--....++..++++.+..+++|||.||+..++|++
T Consensus       251 kdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~  314 (346)
T KOG4510|consen  251 KDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAV  314 (346)
T ss_pred             cceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhcee
Confidence            111111 122356778888888887666666678889999999999999999999999999974

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.35  E-value=7.4e-10  Score=100.89  Aligned_cols=258  Identities=16%  Similarity=0.177  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 019956           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (333)
Q Consensus        46 ~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ip  125 (333)
                      ++.++.+..-++|+..|.-.|+-     ++.++..+.-=|-+-...+.+.++.. .|+.+  +.....+++|....+.+.
T Consensus         7 ~Gil~~l~Ay~lwG~lp~y~kll-----~~~~~~eIlahRviwS~~~~l~ll~~-~r~~~--~~~~~~~~p~~~~~~~l~   78 (293)
T COG2962           7 KGILLALLAYLLWGLLPLYFKLL-----EPLPATEILAHRVIWSFPFMLALLFL-LRQWR--ELKQLLKQPKTLLMLALT   78 (293)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHHHHHHHHHH-HhhhH--HHHHHHhCcHHHHHHHHH
Confidence            45666667778899999999986     34455555544444444333333321 11111  112234567788888899


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhH
Q 019956          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (333)
Q Consensus       126 ally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G  205 (333)
                      +++-..|-.++-+|..+=..-..++=+..+|++..+++.+++|||+|+.||+|+++..+||..-....++     -+.  
T Consensus        79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~-----lpw--  151 (293)
T COG2962          79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS-----LPW--  151 (293)
T ss_pred             HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC-----CcH--
Confidence            9988889999999999988889999999999999999999999999999999999999999976543221     122  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhcCccc-cchHHHHHHHHHHH
Q 019956          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIV-IQDFDAVMNKGFFH-GYSFITVLMILNHA  283 (333)
Q Consensus       206 ~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~~~~~~~~i~~~a  283 (333)
                        ..+.-|+.+++|+..-|+ +|-.+.++....++.+.    +..+...+ ..|..+     +.. +.+...++.+....
T Consensus       152 --val~la~sf~~Ygl~RK~-~~v~a~~g~~lE~l~l~----p~al~yl~~l~~~~~-----~~~~~~~~~~~LLv~aG~  219 (293)
T COG2962         152 --VALALALSFGLYGLLRKK-LKVDALTGLTLETLLLL----PVALIYLLFLADSGQ-----FLQQNANSLWLLLVLAGL  219 (293)
T ss_pred             --HHHHHHHHHHHHHHHHHh-cCCchHHhHHHHHHHHh----HHHHHHHHHHhcCch-----hhhcCCchHHHHHHHhhH
Confidence              234557888999976444 34433324444333332    22222222 222221     111 22233333333333


Q ss_pred             HHh---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhc
Q 019956          284 LSG---IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFL  330 (333)
Q Consensus       284 ~gg---~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~l  330 (333)
                      +..   ++.+..-|...=...++.++.+|.+--++++++|||+++..+.+
T Consensus       220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~  269 (293)
T COG2962         220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLV  269 (293)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            333   23333346666677889999999999999999999999987764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.30  E-value=9.3e-11  Score=106.93  Aligned_cols=275  Identities=17%  Similarity=0.186  Sum_probs=182.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhh-hhhhhH
Q 019956           49 VVTLALTVLTSSQAILIVWSKRAGKYEYS-VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI-VYPIPA  126 (333)
Q Consensus        49 ~~l~ll~l~~~~~~ll~~~s~~~~~~~~~-~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ipa  126 (333)
                      ++.+.+++.|-.-.+..+++.++-++.|+ |.-++-+..++|+.++.....  .+++.. ++.|...+|++.+ +.+..|
T Consensus        15 V~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~--l~~~~~-~r~r~~~sw~~~Lr~~aPta   91 (349)
T KOG1443|consen   15 VLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRR--LYQCSV-PRARVVLSWRDYLRRLAPTA   91 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHH--HHhccC-CccccCCcHHHHHHHhhhhh
Confidence            44555667888877777887765444443 666677888889888766543  222222 2334556787554 566667


Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhHH
Q 019956          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  206 (333)
Q Consensus       127 lly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G~  206 (333)
                      +.-+.+-.+..++++|++.+.|.+.+++.++|+-+|+.++-=||.++.=...+++...|+.+...++..     -...|.
T Consensus        92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq-----f~i~Gf  166 (349)
T KOG1443|consen   92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ-----FNIEGF  166 (349)
T ss_pred             hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc-----eeehhH
Confidence            767789999999999999999999999999999999999888999999999999999999988876432     346799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hcCccccchH-HHHHHHHHH
Q 019956          207 IMAIVMALLSGFAGVYTEAIMKKRPS--RNINVQNFWLYVFGMAFNAVAIVIQDFDAVM-NKGFFHGYSF-ITVLMILNH  282 (333)
Q Consensus       207 ~l~l~aa~~sala~v~~e~~lk~~~~--~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~-~~~~~i~~~  282 (333)
                      .+++++++++|+.-.+.++++++.+.  +++.....++.-+-.+..++..+..|+.... ....|+.+++ ..+.++-.-
T Consensus       167 ~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i  246 (349)
T KOG1443|consen  167 FLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLI  246 (349)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHH
Confidence            99999999999999999999998651  1222222222222222223333333432111 1112222222 233444445


Q ss_pred             HHHhHHHHHHhhhhh--------hHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          283 ALSGIAVSMVMKYAD--------NIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       283 a~gg~~v~~v~k~~~--------~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +.||. .++.+-..+        .+..+.+-.+--+.+.+++....+++++..-++|.
T Consensus       247 ~l~g~-laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl  303 (349)
T KOG1443|consen  247 SLGGL-LAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGL  303 (349)
T ss_pred             HHHHH-HHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence            55554 334443333        33333333344478899999999999998888773

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=3.4e-08  Score=91.26  Aligned_cols=263  Identities=16%  Similarity=0.218  Sum_probs=164.5

Q ss_pred             HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHH
Q 019956           50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLY  129 (333)
Q Consensus        50 ~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally  129 (333)
                      .-+..++-...-.++-|+.-  ..++|+..-.+.+-.-+..++.+.++    ++-|.-+.+  .-+|+...+...++++|
T Consensus        16 sa~~Y~~sS~lm~vvNK~vl--s~y~f~~~l~l~~~Q~l~s~~~v~~l----k~~~lv~~~--~l~~~~~kk~~P~~~lf   87 (314)
T KOG1444|consen   16 SALFYCLSSILMTVVNKIVL--SSYNFPMGLLLMLLQSLASVLVVLVL----KRLGLVNFR--PLDLRTAKKWFPVSLLF   87 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHH----HHhceeecC--CcChHHHHHHccHHHHH
Confidence            33344444444555555532  25777766655444444444444444    333321222  23467777788888889


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhHHHHH
Q 019956          130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMA  209 (333)
Q Consensus       130 ~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G~~l~  209 (333)
                      .+.-...-.+++|++.+++.++++..|+.||+.-..++|.|.+..-|.++.+..+|......+..+     ....|+.++
T Consensus        88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s-----f~~~gY~w~  162 (314)
T KOG1444|consen   88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS-----FNLRGYSWA  162 (314)
T ss_pred             HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce-----ecchhHHHH
Confidence            888888889999999999999999999999999999999999999999999999998766544222     123489999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhcCccccc-hHHHHHHHHHHHH
Q 019956          210 IVMALLSGFAGVYTEAIMKKRPSR---NINVQNFWLYVFGMAFNAVAI-VIQDFDAVMNKGFFHGY-SFITVLMILNHAL  284 (333)
Q Consensus       210 l~aa~~sala~v~~e~~lk~~~~~---~~~~~n~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~i~~~a~  284 (333)
                      +..++..+...++.|+..+..+..   -.+..|    +.+.+...... +..|+++...+  +..+ ....|..+....+
T Consensus       163 ~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNn----l~~L~~l~~~~~~~ge~~~l~~~--~~~~~~~~~~~~~~lScv  236 (314)
T KOG1444|consen  163 LANCLTTAAFVVYVKKSVDSANLNKFGLVFYNN----LLSLPPLLILSFITGELDALSLN--FDNWSDSSVLVVMLLSCV  236 (314)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccceeEEeehh----HHHHHHHHHHHHHhcchHHHHhh--cccccchhHHHHHHHHHH
Confidence            999999999999999988764321   123332    33444433322 34455522211  1112 2445666666777


Q ss_pred             HhHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhcc
Q 019956          285 SGIAVSMVMKYA----DNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG  331 (333)
Q Consensus       285 gg~~v~~v~k~~----~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG  331 (333)
                      .|..+++.....    ++..-..........+.+...+++|++.++.-++|
T Consensus       237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~g  287 (314)
T KOG1444|consen  237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIG  287 (314)
T ss_pred             HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHH
Confidence            776666655321    11111111112234555555666688888776655

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.06  E-value=5.6e-09  Score=93.95  Aligned_cols=207  Identities=19%  Similarity=0.181  Sum_probs=151.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQT  201 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~  201 (333)
                      |.+.+.+-.....+..-++.|++-++..+.+.+|.+.+.+.+.++=|+|+......+-.+..+|.++..+.++..+ .+-
T Consensus       109 Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s-PNF  187 (367)
T KOG1582|consen  109 YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS-PNF  187 (367)
T ss_pred             hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC-CCc
Confidence            7777887788899999999999999999999999999999999999999999999999999999999887643221 122


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHHH
Q 019956          202 PLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILN  281 (333)
Q Consensus       202 ~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~  281 (333)
                      ...|+.++-+|-++.|+-+-.+||.+|.++.++ ...-++-+..|.++.++.+... ++-.+...|...++.-++...+.
T Consensus       188 ~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss-~EmvfySy~iG~vflf~~mvlT-ge~f~a~~fcaehp~~tyGy~~~  265 (367)
T KOG1582|consen  188 NLIGVMMISGALLADAVIGNVQEKAMKMNPASS-SEMVFYSYGIGFVFLFAPMVLT-GELFSAWTFCAEHPVRTYGYAFL  265 (367)
T ss_pred             ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCc-ceEEEeeecccHHHHHHHHHhc-ccchhhhHHHHhCcHhHHHHHHH
Confidence            357999999999999999999999999876533 2111233445555555554322 22111111222333334443332


Q ss_pred             H----HHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhcc
Q 019956          282 H----ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG  331 (333)
Q Consensus       282 ~----a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG  331 (333)
                      -    -+|...+--.+|..++......++.+--+|+++|.++|..|+|....-|
T Consensus       266 ~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~  319 (367)
T KOG1582|consen  266 FSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWS  319 (367)
T ss_pred             HHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhh
Confidence            2    2233334344588888888888999999999999999999999876544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.05  E-value=5.8e-09  Score=97.75  Aligned_cols=202  Identities=21%  Similarity=0.269  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCC---Cccccc
Q 019956          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNS---DRVLQT  201 (333)
Q Consensus       125 pally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~---~~~~~~  201 (333)
                      -+.+.++.|...+.||.+.+.+...+++++.=+||-.++.++.+||+|..+.+++++.+.||+++..+++.   +....+
T Consensus       165 fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~  244 (416)
T KOG2765|consen  165 FCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASR  244 (416)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccc
Confidence            45557899999999999999999999999999999999999999999999999999999999999876432   223456


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHH---HHHHHHHHhhhhhhhhcCccccch-HHHHH
Q 019956          202 PLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMA---FNAVAIVIQDFDAVMNKGFFHGYS-FITVL  277 (333)
Q Consensus       202 ~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~  277 (333)
                      +..|.++.+++|+..|+|.+..+|-..+++. -+-++ ......|+.   +..+..+..|.-....   |+--+ .....
T Consensus       245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~-rvdi~-lffGfvGLfnllllwP~l~iL~~~~~e~---F~lP~~~q~~~  319 (416)
T KOG2765|consen  245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGE-RVDIQ-LFFGFVGLFNLLLLWPPLIILDFFGEER---FELPSSTQFSL  319 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccHH-HHHHHHHHHHHHHHhHHHHHHHHhccCc---ccCCCCceeEe
Confidence            7899999999999999999998876555531 12222 122222322   2222222222110000   11101 11122


Q ss_pred             HHHHHHHHhHHHHHHh-----hhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          278 MILNHALSGIAVSMVM-----KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       278 ~i~~~a~gg~~v~~v~-----k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +++.+ +-|.+++=.+     -..++.+...+.+++++++++...++=|.++|+.+++|+
T Consensus       320 vv~~~-ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGs  378 (416)
T KOG2765|consen  320 VVFNN-LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGS  378 (416)
T ss_pred             eeHhh-HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHH
Confidence            22333 3333333222     234555555566677899999999999999999999996

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.03  E-value=1.3e-09  Score=102.04  Aligned_cols=206  Identities=17%  Similarity=0.251  Sum_probs=141.3

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCcc
Q 019956          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRV  198 (333)
Q Consensus       119 ~~~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~  198 (333)
                      +....-.|+.+++...+.+.+++++|.+.+|.++.+.|++|.++++++.+|+.++.-|++++....||.+....+.+   
T Consensus        83 ~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~---  159 (316)
T KOG1441|consen   83 LRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELS---  159 (316)
T ss_pred             hHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecccc---
Confidence            33456678888999999999999999999999999999999999999999999999999999999999988764221   


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH--HHHHHHHHH-HHHHHhhhhhhhhcC-ccccchHH
Q 019956          199 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWL--YVFGMAFNA-VAIVIQDFDAVMNKG-FFHGYSFI  274 (333)
Q Consensus       199 ~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l--~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~~  274 (333)
                        -...|.+..+++.+..++.+++.|+++++++. +..-.|...  +-.+.++.+ +.....+++.. . + ....++..
T Consensus       160 --fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~-~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~-~~~~~~~~~~  234 (316)
T KOG1441|consen  160 --FNLFGFISAMISNLAFALRNILSKKLLTSKGE-SLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-V-GFLTAPWFVT  234 (316)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccCchHHHHHhhhHHHHHHhcchHhhhcccce-e-eeeccccchh
Confidence              34689999999999999999999999964322 222122222  223333333 22222222211 0 1 11133332


Q ss_pred             HHHHHHHH---HHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          275 TVLMILNH---ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       275 ~~~~i~~~---a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      .+..++.+   -.-.+....++.+.+++.-..+..+--++.++.|+++|++++|+...+|.
T Consensus       235 ~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~  295 (316)
T KOG1441|consen  235 FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGY  295 (316)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHH
Confidence            22222222   11223444556666666555555555577788899999999999998885

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.00  E-value=2.1e-10  Score=103.20  Aligned_cols=207  Identities=16%  Similarity=0.274  Sum_probs=140.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHc-CChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCC---
Q 019956          121 VYPIPAVLYLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD---  196 (333)
Q Consensus       121 ~~~ipally~~~n~l~~~al~~-l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~---  196 (333)
                      .|++.-..+++.|....+++++ +|.+...+.++..++.+.+++++++|||+|.+|..++++.++|+.+.....+.|   
T Consensus        66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~  145 (330)
T KOG1583|consen   66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS  145 (330)
T ss_pred             hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence            4777777788999999999985 999999999999999999999999999999999999999999999876532211   


Q ss_pred             ------cc-----ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHH-HHHHHHHHHHHHHH--HHhhhhhh
Q 019956          197 ------RV-----LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNF-WLYVFGMAFNAVAI--VIQDFDAV  262 (333)
Q Consensus       197 ------~~-----~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~-~l~~~~~~~~~~~~--~~~~~~~~  262 (333)
                            +.     ......|+.+...+.+.+|..++|+|..+|++.++  |-.++ +.-+.+.++.+...  ....|...
T Consensus       146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh--~~EalFytH~LsLP~Flf~~~div~~~~~~  223 (330)
T KOG1583|consen  146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH--WKEALFYTHFLSLPLFLFMGDDIVSHWRLA  223 (330)
T ss_pred             hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHhccchHHHhcchHHHHHHHH
Confidence                  00     11234699999999999999999999999997752  22222 22233333332211  01112111


Q ss_pred             h--------hcCccccchHHHHHHHHHHHHH-hHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhc
Q 019956          263 M--------NKGFFHGYSFITVLMILNHALS-GIAVSMVMKY---ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFL  330 (333)
Q Consensus       263 ~--------~~~~~~g~~~~~~~~i~~~a~g-g~~v~~v~k~---~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~l  330 (333)
                      .        ..|+.   -+..|.-++.+.+. ..++..|.-.   .++........++..++.++|+.+|..++|+..++
T Consensus       224 ~~se~~~~p~~g~~---vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l  300 (330)
T KOG1583|consen  224 FKSESYLIPLLGFK---VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL  300 (330)
T ss_pred             hcCcceeccccCcc---ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence            1        11211   23344444444443 3455444421   12222333344566899999999999999999999


Q ss_pred             cc
Q 019956          331 GS  332 (333)
Q Consensus       331 G~  332 (333)
                      |+
T Consensus       301 Ga  302 (330)
T KOG1583|consen  301 GA  302 (330)
T ss_pred             HH
Confidence            96

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.97  E-value=5.7e-07  Score=80.47  Aligned_cols=249  Identities=15%  Similarity=0.075  Sum_probs=148.0

Q ss_pred             HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHH
Q 019956           50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLY  129 (333)
Q Consensus        50 ~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally  129 (333)
                      +++..+-.+.+..+....-     +..-+.-..-+|-.+.-++.+.+. |-||++      ..+.+|+....|   ++.-
T Consensus        17 ll~amvsiq~Gas~Ak~LF-----P~vG~~g~t~lRl~~aaLIll~l~-RPwr~r------~~~~~~~~~~~y---GvsL   81 (292)
T COG5006          17 LLVAMVSIQSGASFAKSLF-----PLVGAAGVTALRLAIAALILLALF-RPWRRR------LSKPQRLALLAY---GVSL   81 (292)
T ss_pred             HHHHHHHHHhhHHHHHHHc-----cccChhhHHHHHHHHHHHHHHHHh-hHHHhc------cChhhhHHHHHH---HHHH
Confidence            4555666677776654432     333455556666666555444443 112211      112334444444   4555


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhHHHHH
Q 019956          130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMA  209 (333)
Q Consensus       130 ~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G~~l~  209 (333)
                      ...|.++|.+++.+|-++...+-++-|+.+++++    .||..-.-|+++.++-++.+....+  +  ..+....|..+.
T Consensus        82 g~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vwvaLAvlGi~lL~p~~~--~--~~~lDp~Gv~~A  153 (292)
T COG5006          82 GGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVWVALAVLGIWLLLPLGQ--S--VWSLDPVGVALA  153 (292)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhhHHHHHHHHHHHHhheeccC--C--cCcCCHHHHHHH
Confidence            7899999999999999999999999999998865    5666666677776655555444322  1  112456899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHH-----HHHHHHH
Q 019956          210 IVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL-----MILNHAL  284 (333)
Q Consensus       210 l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~i~~~a~  284 (333)
                      +++..+|+.|-+..+|.-+..+-  .--...-+. .+.++.++.-..+.+..     ++   ++....     .++..++
T Consensus       154 l~AG~~Wa~YIv~G~r~g~~~~g--~~g~a~gm~-vAaviv~Pig~~~ag~~-----l~---~p~ll~laLgvavlSSal  222 (292)
T COG5006         154 LGAGACWALYIVLGQRAGRAEHG--TAGVAVGML-VAALIVLPIGAAQAGPA-----LF---SPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             HHHhHHHHHHHHHcchhcccCCC--chHHHHHHH-HHHHHHhhhhhhhcchh-----hc---ChHHHHHHHHHHHHhccc
Confidence            99999999999999999764332  111111111 11111111111111111     11   222111     2222333


Q ss_pred             HhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          285 SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       285 gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      -..+=-..++..+...-....+..|.++++.|++++||++|..+|+|.
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI  270 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAI  270 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            333333455666655555556677899999999999999999999875

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.95  E-value=8.4e-09  Score=82.92  Aligned_cols=123  Identities=16%  Similarity=0.087  Sum_probs=94.1

Q ss_pred             HHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHH-HHHHHHH
Q 019956           57 LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLL  135 (333)
Q Consensus        57 ~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipall-y~~~n~l  135 (333)
                      .|+...+..|..    .++++|...++.+.+...+ .+++..  ..+++.    ....++++.....+.+++ ..+.+.+
T Consensus         2 ~~a~~~~~~k~~----~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    2 SWAIYSVFSKKL----LKKISPLSITFWRFLIAGI-LLILLL--ILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             eeeeHHHHHHHH----hccCCHHHHHHHHHHHHHH-HHHHHH--hhcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence            466777777765    2347899999999998875 333332  111111    111234455556667776 4789999


Q ss_pred             HHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccc
Q 019956          136 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (333)
Q Consensus       136 ~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~  190 (333)
                      .+.+++++|++..+++.++.|+++++++++++||+++++||.|+++.+.|+.++.
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.88  E-value=3.4e-08  Score=79.36  Aligned_cols=132  Identities=13%  Similarity=0.089  Sum_probs=103.8

Q ss_pred             HHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHH
Q 019956           51 TLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYL  130 (333)
Q Consensus        51 l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~  130 (333)
                      -++..++++..++..|.-    -+..+|....++|.++...++..+.+.   .++. . ..-..+.|...-..+.|+.-.
T Consensus         8 ALLsA~fa~L~~iF~KIG----l~~vdp~~At~IRtiVi~~~l~~v~~~---~g~~-~-~~~~~~~k~~lflilSGla~g   78 (140)
T COG2510           8 ALLSALFAGLTPIFAKIG----LEGVDPDFATTIRTIVILIFLLIVLLV---TGNW-Q-AGGEIGPKSWLFLILSGLAGG   78 (140)
T ss_pred             HHHHHHHHHHHHHHHHHh----ccccCccHHHHHHHHHHHHHHHHHHHh---cCce-e-cccccCcceehhhhHHHHHHH
Confidence            345577889999998874    455778889999998888877776632   1211 0 000123455555667777677


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccc
Q 019956          131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (333)
Q Consensus       131 ~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~  191 (333)
                      ++-.++|.|++.=+++...-+..+.+++++++++++||||+|..||+++.+..+|+.++..
T Consensus        79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            8999999999999999999999999999999999999999999999999999999988753

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.84  E-value=2.6e-08  Score=80.00  Aligned_cols=71  Identities=24%  Similarity=0.359  Sum_probs=63.0

Q ss_pred             hhhhHHHH-HHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccC
Q 019956          122 YPIPAVLY-LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (333)
Q Consensus       122 ~~ipally-~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~  193 (333)
                      ...-+++. ..++.+.++|+++.| +...++.++.|+++++++++++|||+++++|.++++.++|+.++..++
T Consensus        37 ~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   37 LILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            33445554 489999999999999 588899999999999999999999999999999999999999988764

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.76  E-value=1.4e-09  Score=96.97  Aligned_cols=242  Identities=16%  Similarity=0.196  Sum_probs=166.8

Q ss_pred             HHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHcCC
Q 019956           65 IVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVD  144 (333)
Q Consensus        65 ~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~~n~l~~~al~~l~  144 (333)
                      ...++++..   -|+.-.|+..++-.++=-+++.  +|++      .....|+.   |.+.|+...-.|.+.--|.||.+
T Consensus        38 s~la~k~iN---~Pt~QtFl~Y~LLalVY~~~~~--fR~~------~~~~~~~h---Yilla~~DVEaNy~vV~AyQyTs  103 (336)
T KOG2766|consen   38 SELARKGIN---APTSQTFLNYVLLALVYGPIML--FRRK------YIKAKWRH---YILLAFVDVEANYFVVKAYQYTS  103 (336)
T ss_pred             HHHHhccCC---CccHHHHHHHHHHHHHHhhHHH--hhhH------HHHHHHHH---hhheeEEeecccEEEeeehhhcc
Confidence            344554333   2666677777654444333331  3321      12233555   88888888889999999999999


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccC---CCCccccchhhHHHHHHHHHHHHHHHHH
Q 019956          145 APGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS---NSDRVLQTPLQGWIMAIVMALLSGFAGV  221 (333)
Q Consensus       145 ~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~---~~~~~~~~~~~G~~l~l~aa~~sala~v  221 (333)
                      -...+++-.-.++.+.++++++||.|+.+.|..|+++-..|+.++..++   +++...+++..|+.++++++.+.|..++
T Consensus       104 mtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv  183 (336)
T KOG2766|consen  104 MTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNV  183 (336)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccc
Confidence            9999999999999999999999999999999999999999998876542   2233356899999999999999999999


Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHH--H-HHHHHHHHhHHHHHHhhhhhh
Q 019956          222 YTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITV--L-MILNHALSGIAVSMVMKYADN  298 (333)
Q Consensus       222 ~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~-~i~~~a~gg~~v~~v~k~~~~  298 (333)
                      ..|.+-|+.+   .....-++.++|.+...+-.. .+..+....    .|++...  + -++.+-+-..+...++|..++
T Consensus       184 ~EEflvkn~d---~~elm~~lgLfGaIIsaIQ~i-~~~~~~~tl----~w~~~i~~yl~f~L~MFllYsl~pil~k~~~a  255 (336)
T KOG2766|consen  184 SEEFLVKNAD---RVELMGFLGLFGAIISAIQFI-FERHHVSTL----HWDSAIFLYLRFALTMFLLYSLAPILIKTNSA  255 (336)
T ss_pred             cHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHh-hhccceeeE----eehHHHHHHHHHHHHHHHHHHhhHHheecCCc
Confidence            9999998865   344455778888888877643 332222110    1222111  1 112233344455566677666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCcchhhhc
Q 019956          299 IVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFL  330 (333)
Q Consensus       299 i~k~~~~~~~~v~t~lls~~lfge~lt~~~~l  330 (333)
                      ..-+.....+=+++.++  ..||-+.++..++
T Consensus       256 T~~nlslLTsDmwsl~i--~~FgYhv~wLY~l  285 (336)
T KOG2766|consen  256 TMFNLSLLTSDMWSLLI--RTFGYHVDWLYFL  285 (336)
T ss_pred             eEEEhhHhHHHHHHHHH--HHHhcchhhhhHH
Confidence            66566656666788777  7788888776554

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.56  E-value=1.7e-05  Score=72.77  Aligned_cols=201  Identities=11%  Similarity=0.128  Sum_probs=130.8

Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHH-HHhhHHHHHHHHHHHHhcCccCHHHHH----HHHHHHhhhhccc
Q 019956          116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQI-LKNLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTTAQ  190 (333)
Q Consensus       116 ~~~~~~~~ipally~~~n~l~~~al~~l~~~~~~v-l~~~k~l~talls~l~Lkekls~~qw~----al~ll~~Gv~~v~  190 (333)
                      .+.++.-.+.+++..+.+..+|.+.+++..+...= -...+++.+++..+++++|--+..+|.    |+++..+|+.+..
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            36677788899999999999999999999885544 447889999999999999999988887    8888999998887


Q ss_pred             ccCCCCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCc
Q 019956          191 LNSNSDRV---LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGF  267 (333)
Q Consensus       191 ~~~~~~~~---~~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~  267 (333)
                      ..++.++.   .++...|+...+++.+.+..|.+..+. .+-++.+-+..|.+-+.+.+.+++...     .+     .+
T Consensus       122 ~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~~~~~~~~lPqaiGm~i~a~i~~~~~-----~~-----~~  190 (269)
T PF06800_consen  122 YQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA-FHVSGWSAFLPQAIGMLIGAFIFNLFS-----KK-----PF  190 (269)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh-cCCChhHhHHHHHHHHHHHHHHHhhcc-----cc-----cc
Confidence            66443321   235567999999999999999998665 233222134444444433333333322     11     11


Q ss_pred             cccchHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchh
Q 019956          268 FHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLA  327 (333)
Q Consensus       268 ~~g~~~~~~~~i~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~  327 (333)
                      ++..++...+.-+.-+++.+..-+.....+...--..+..+++++++-|.++|+|+=+..
T Consensus       191 ~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k  250 (269)
T PF06800_consen  191 FEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK  250 (269)
T ss_pred             cccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence            222222222222223333333333333323222223356789999999999999986654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.53  E-value=3.8e-06  Score=70.41  Aligned_cols=139  Identities=12%  Similarity=0.170  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhcc---CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--Ccccc-----cchh
Q 019956           49 VVTLALTVLTSSQAILIVWSKRA---GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD--NRLST-----TLDE  118 (333)
Q Consensus        49 ~~l~ll~l~~~~~~ll~~~s~~~---~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~--~~~~~-----~~~~  118 (333)
                      ++.+.-++..+.+.+..|...++   .++..++....+.......++.++...  ..++.....  .....     +.+.
T Consensus         3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAF--LLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhHHHHhhhhhhcchHHH
Confidence            34455667777788777664333   346778888888888887777766543  222211000  00001     2344


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcc
Q 019956          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (333)
Q Consensus       119 ~~~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v  189 (333)
                      .......+++....|...|..+++++|.+++++.+.|.+.+.++++++++|+++..|+.|+.+.++|+.+-
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            55677788888999999999999999999999999999999999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.49  E-value=8.9e-06  Score=71.66  Aligned_cols=262  Identities=14%  Similarity=0.182  Sum_probs=155.5

Q ss_pred             HHHHhHHHHHHHHhhcc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 019956           55 TVLTSSQAILIVWSKRA--GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK  132 (333)
Q Consensus        55 ~l~~~~~~ll~~~s~~~--~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~~  132 (333)
                      .+.++...+++...++.  ....|+.--+.+...-+-+.+.+.++.+    .+.-+ -|    .++...+..|+++-.+.
T Consensus        11 ~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~----l~~~~-fR----~t~aK~WfpiSfLLv~M   81 (309)
T COG5070          11 SLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKF----LRLVE-FR----LTKAKKWFPISFLLVVM   81 (309)
T ss_pred             HHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHH----HhHhh-ee----hhhhhhhcCHHHHHHHH
Confidence            34566666776665432  2345665555555555556666666632    11101 11    22333355666665555


Q ss_pred             HHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCC--ccccchhhHHHHHH
Q 019956          133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD--RVLQTPLQGWIMAI  210 (333)
Q Consensus       133 n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~--~~~~~~~~G~~l~l  210 (333)
                      -.-.--+++|++.+.|.+.+++.++.+|..-++++|.|++.....+.++..+.-.+-...+...  -..+..+.|++.+.
T Consensus        82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~  161 (309)
T COG5070          82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMF  161 (309)
T ss_pred             HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEe
Confidence            5555668899999999999999999999999999999999999999888776654433221100  01235568999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhcCccccchHHHHHHHHHHHHHhH--
Q 019956          211 VMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVA-IVIQDFDAVMNKGFFHGYSFITVLMILNHALSGI--  287 (333)
Q Consensus       211 ~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~i~~~a~gg~--  287 (333)
                      ..|+.++..-...||..|-.+.. -+....+-...+.+..+.. .+.+||+..   +.-.+++.-....++-.++...  
T Consensus       162 ~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~---n~annl~~d~l~am~ISgl~svgi  237 (309)
T COG5070         162 TNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPG---NLANNLSVDSLMAMFISGLCSVGI  237 (309)
T ss_pred             hhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcc---hhhcCCChHHHHHHHHHHHHHhhh
Confidence            99999999988888877643211 1222223345566655533 345677532   1222344434333332233222  


Q ss_pred             --HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhh
Q 019956          288 --AVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFF  329 (333)
Q Consensus       288 --~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~  329 (333)
                        +.+..++-.++..-...-+..-....+.|.++|||+.+..-+
T Consensus       238 Sy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si  281 (309)
T COG5070         238 SYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSI  281 (309)
T ss_pred             hhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHH
Confidence              233334444444433334444466778889999999886544

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=8.7e-07  Score=80.14  Aligned_cols=201  Identities=17%  Similarity=0.229  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhH
Q 019956          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (333)
Q Consensus       126 ally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G  205 (333)
                      ++.+.+.-....+-++|++.+-|++-.++..+|+.++++++||+|=+..-..+-.+...|--+=. +.++ ....-...|
T Consensus       109 svVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv-dqE~-~~~~ls~~G  186 (347)
T KOG1442|consen  109 SVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV-DQEG-STGTLSWIG  186 (347)
T ss_pred             hheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecc-cccc-ccCccchhh
Confidence            33344455555667899999999999999999999999999999988776555444444432211 1110 112234579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcCccccchHHHHHHHHHHHH
Q 019956          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQ-DFDAVMNKGFFHGYSFITVLMILNHAL  284 (333)
Q Consensus       206 ~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~i~~~a~  284 (333)
                      .++-+.++++-|+-++|.+|.+-...+ .+|.-+++...++.++.++.+.+. |.+++  .+|-|-+...-|.+....++
T Consensus       187 vifGVlaSl~vAlnaiytkk~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v--~~~~~l~a~~Fw~~mtLsgl  263 (347)
T KOG1442|consen  187 VIFGVLASLAVALNAIYTKKVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAV--VGFPHLPAIKFWILMTLSGL  263 (347)
T ss_pred             hHHHHHHHHHHHHHHHhhheecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHH--cCcccchHHHHHHHHHHHHH
Confidence            999999999999999999987655444 689989999999888887766532 33332  24444556677888888888


Q ss_pred             HhHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhcc
Q 019956          285 SGIAVSMVM----KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG  331 (333)
Q Consensus       285 gg~~v~~v~----k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG  331 (333)
                      .|..+.++.    |-.+....+...+..-..-+++++.+++|..+..-|-|
T Consensus       264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwts  314 (347)
T KOG1442|consen  264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTS  314 (347)
T ss_pred             HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeee
Confidence            887777763    55566655555555556677888888999887765544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.48  E-value=7.5e-06  Score=74.69  Aligned_cols=132  Identities=14%  Similarity=-0.001  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 019956           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (333)
Q Consensus        46 ~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ip  125 (333)
                      +..++.++..+.|+.+.+..|...++.+  .++.+....+.....++.++..   ...+..  . .  .++++.......
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~---~~~~~~--~-~--~~~~~~~~~~~~  197 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKKEG--PELLQFTGWVLLLGALLLLPFA---WFLGPN--P-Q--ALSLQWGALLYL  197 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcCC--chHHHHHHHHHHHHHHHHHHHH---HhcCCC--C-C--cchHHHHHHHHH
Confidence            4556777788899999999887643211  1122333234445444444443   222211  1 1  123343334444


Q ss_pred             HHH-HHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhh
Q 019956          126 AVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT  187 (333)
Q Consensus       126 all-y~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~  187 (333)
                      +++ ..+...+.+.++++.++++.+++..+.|+++++++++++||++++.||.|..+.+.|++
T Consensus       198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            544 46788899999999999999999999999999999999999999999999999999874

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.43  E-value=5.6e-06  Score=69.41  Aligned_cols=128  Identities=15%  Similarity=0.211  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC----CCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--Cccc-cc--hHHH
Q 019956          205 GWIMAIVMALLSGFAGVYTEAIMKKR----PSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK--GFFH-GY--SFIT  275 (333)
Q Consensus       205 G~~l~l~aa~~sala~v~~e~~lk~~----~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~-g~--~~~~  275 (333)
                      |.+++++++++.|+..++.|+.+|+.    ...+.+....++...+.++.++..+..|+.+..+.  .... ..  +...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            67889999999999999999999984    22245555556667777777766655444322110  1111 00  2233


Q ss_pred             HHHHHHHH----HHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          276 VLMILNHA----LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       276 ~~~i~~~a----~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +..++..+    +.......++++.+++.......+..++++++|+++|||++|...++|.
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~  141 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGI  141 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHH
Confidence            33333222    3345556778999999999999999999999999999999999999885

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.39  E-value=3.5e-06  Score=72.87  Aligned_cols=100  Identities=16%  Similarity=0.143  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCCCCccccchhhHHH
Q 019956          128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWI  207 (333)
Q Consensus       128 ly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~~~~~~~~~~~G~~  207 (333)
                      +.+..|+++..+++.++++..+.+..++-.++=++++++||.|+...+.++.++..-|+.++.+.++.   ..+...|+.
T Consensus        62 ~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~---~a~e~iGi~  138 (290)
T KOG4314|consen   62 FWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE---HADEIIGIA  138 (290)
T ss_pred             EEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch---hhhhhhhHH
Confidence            45789999999999999999999999999999999999999999999999999999999998864322   235689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Q 019956          208 MAIVMALLSGFAGVYTEAIMKKR  230 (333)
Q Consensus       208 l~l~aa~~sala~v~~e~~lk~~  230 (333)
                      +.+.+++.+|++-|.+|+.....
T Consensus       139 ~AV~SA~~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen  139 CAVGSAFMAALYKVLFKMFIGNA  161 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999887653

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.39  E-value=2.9e-06  Score=67.98  Aligned_cols=75  Identities=11%  Similarity=0.080  Sum_probs=65.1

Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccc
Q 019956          116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (333)
Q Consensus       116 ~~~~~~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~  190 (333)
                      |+.....++.-+.|.+...+...+++.+|.+....+.++.++.+++++++++|||++++||+++.+.++|+.++.
T Consensus        34 ~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         34 KHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            333333444446688999999999999999999999999999999999999999999999999999999998775

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.18  E-value=6.6e-05  Score=72.12  Aligned_cols=142  Identities=11%  Similarity=0.114  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCC---ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CC----Cccc-ccc
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGK---YEYSVTTANFLVETLKCALSLAALARIWNHEGV-T-DD----NRLS-TTL  116 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~---~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~-~-~~----~~~~-~~~  116 (333)
                      +.++.++-.+.++.+.+..|...++.+   +++++.......-.+..++++++..  ..+... . ..    .... ..+
T Consensus       195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~--~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVL--FFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHhhhcccccch
Confidence            555566667888899988876433211   2456665544445555555555542  111100 0 00    0000 011


Q ss_pred             hh-hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccc
Q 019956          117 DE-VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (333)
Q Consensus       117 ~~-~~~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~  190 (333)
                      .. .......++.|.++|.+.|.+++.+++.++++...+||+++.++++++++|++++.|++|.++.+.|+.+.+
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            11 223445677789999999999999999999999999999999999999999999999999999999998754

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.14  E-value=1.6e-05  Score=74.57  Aligned_cols=141  Identities=9%  Similarity=0.017  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ccc-----ccchhhh
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN-RLS-----TTLDEVI  120 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~-~~~-----~~~~~~~  120 (333)
                      +.++.++..+.++.+.+..|...++  +++++.+..........++.+++..  .. ++..... ...     .......
T Consensus       146 G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~  220 (302)
T TIGR00817       146 GFLSAMISNITFVSRNIFSKKAMTI--KSLDKTNLYAYISIMSLFLLSPPAF--IT-EGPPFLPHGFMQAISGVNVTKIY  220 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHHH--HH-cchHHHHHHHHHhhcccCchHHH
Confidence            5556666778888888887654322  2466766666666555555555432  11 1110000 000     0011111


Q ss_pred             h-hhhhHH-HHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          121 V-YPIPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       121 ~-~~ipal-ly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      . ....+. .+...|.+.|.+++++++.++++....+|++++++++++++|+++..|++|..+.+.|+.+.+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            1 223333 46667788889999999999999999999999999999999999999999999999999988754

specificities overlap.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.14  E-value=9.8e-05  Score=69.13  Aligned_cols=132  Identities=10%  Similarity=-0.008  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhH
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  126 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipa  126 (333)
                      ..++.++..+.|+.+.++.|..++    ++++.+..+..  .. ++..+...  . .+.. .   ...++........-+
T Consensus       157 G~~~~l~aa~~~A~~~v~~k~~~~----~~~~~~~~~~~--~~-~~l~~~~~--~-~~~~-~---~~~~~~~~~~l~~~~  222 (295)
T PRK11689        157 SYGLAFIGAFIWAAYCNVTRKYAR----GKNGITLFFIL--TA-LALWIKYF--L-SPQP-A---MVFSLPAIIKLLLAA  222 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccC----CCCchhHHHHH--HH-HHHHHHHH--H-hcCc-c---ccCCHHHHHHHHHHH
Confidence            556677778899999999877642    23343332211  11 11111111  2 1111 1   112233333333334


Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       127 lly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      +.-.+...+.+.+++++|++..+++..+.|++.+++++++++|+++..||+|.++.+.|+.+....
T Consensus       223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            444568889999999999999999999999999999999999999999999999999999877643

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.06  E-value=0.00021  Score=66.85  Aligned_cols=134  Identities=13%  Similarity=0.042  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 019956           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (333)
Q Consensus        46 ~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ip  125 (333)
                      ...++.++..+.++.+.++.|...+    ++++.+... ..++..++..+..   ......     ...++.........
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~----~~~~~~~~~-~~~~~~~~l~~~~---~~~~~~-----~~~~~~~~~~~l~l  214 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGA----EHGPATVAI-GSLIAALIFVPIG---ALQAGE-----ALWHWSILPLGLAV  214 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc----cCCchHHHH-HHHHHHHHHHHHH---HHccCc-----ccCCHHHHHHHHHH
Confidence            3556666778889999998876632    233433322 2233222222222   111110     11122221111233


Q ss_pred             HHH-HHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          126 AVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       126 all-y~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      +++ -.++..+++.+++++++...+++..+.|++++++++++++|++++.||+|..+.+.|+......
T Consensus       215 gv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        215 AILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            333 3467789999999999999999999999999999999999999999999999999999887543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.06  E-value=0.0002  Score=69.01  Aligned_cols=62  Identities=19%  Similarity=0.124  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       131 ~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      +...+.++++++++|+..++...+.|++++++++++|+|++++.|++|.++.+.|+.+++.+
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            45667888999999999999999999999999999999999999999999999999998754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.97  E-value=6.4e-05  Score=69.82  Aligned_cols=62  Identities=13%  Similarity=0.119  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhc
Q 019956          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (333)
Q Consensus       127 lly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~  188 (333)
                      +...+.+.+.+.++++.|++....+.++.|+++.+++++++||++++.||.|..+.++|+.+
T Consensus       219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            33457888999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.97  E-value=0.00027  Score=66.00  Aligned_cols=135  Identities=13%  Similarity=0.019  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhH
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  126 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipa  126 (333)
                      ..+..++..+.|+...+..|...   ++ . +.......-.+...+..++.   ...+..  .. ...+++.......-+
T Consensus       151 G~l~~l~a~~~~a~~~~~~~~~~---~~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~-~~~~~~~~~~i~~l~  219 (292)
T PRK11272        151 GAILILIASASWAFGSVWSSRLP---LP-V-GMMAGAAEMLAAGVVLLIAS---LLSGER--LT-ALPTLSGFLALGYLA  219 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC---CC-c-chHHHHHHHHHHHHHHHHHH---HHcCCc--cc-ccCCHHHHHHHHHHH
Confidence            45555566778888887765532   11 1 22222222222222222222   111111  10 111223333333334


Q ss_pred             HH-HHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          127 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       127 ll-y~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      ++ -.+...+.+.+++++++++.+++..+.|+++++++++++||++++.||+|.++.+.|+.+....
T Consensus       220 i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        220 VFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            43 3467889999999999999999999999999999999999999999999999999999887653

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.94  E-value=4.3e-05  Score=61.07  Aligned_cols=114  Identities=15%  Similarity=0.229  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHHHHHHHhHHHHHHh
Q 019956          214 LLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM  293 (333)
Q Consensus       214 ~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~a~gg~~v~~v~  293 (333)
                      ++||.++++.|+..|+.+   +...+.+....+.+ .++.....+..+..+.. .+.+.......++..+++..+....+
T Consensus         1 ~~~a~~~~~~k~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS---PLSITFWRFLIAGI-LLILLLILGRKPFKNLS-PRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccCC---HHHHHHHHHHHHHH-HHHHHHhhccccccCCC-hhhhhhhhHhhccceehHHHHHHHHH
Confidence            468899999999998854   34344444555544 33322222221100000 00111122233334677778888889


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       294 k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      |+.+...........|+++.++++++++|+++...++|.
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~  114 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGI  114 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999885

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.92  E-value=4.1e-05  Score=61.85  Aligned_cols=118  Identities=17%  Similarity=0.248  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhcCccccchHHHHHHH---
Q 019956          205 GWIMAIVMALLSGFAGVYTEAIMKKRPS-RNINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVLMI---  279 (333)
Q Consensus       205 G~~l~l~aa~~sala~v~~e~~lk~~~~-~~~~~~n~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~i---  279 (333)
                      -.++.+++++.+|+..++.|--+++.++ .-..+++.-    ...+.....+. ..++...   -.   +.-.|.-+   
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiV----i~~~l~~v~~~~g~~~~~~---~~---~~k~~lflilS   73 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIV----ILIFLLIVLLVTGNWQAGG---EI---GPKSWLFLILS   73 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHH----HHHHHHHHHHhcCceeccc---cc---CcceehhhhHH
Confidence            3567899999999999998877776443 122333332    22222222221 1222111   11   22222222   


Q ss_pred             -HHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          280 -LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       280 -~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                       +..+++.++..+.+|..++....+....++++++++|++++||.+|..+++|.
T Consensus        74 Gla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~  127 (140)
T COG2510          74 GLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGI  127 (140)
T ss_pred             HHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHH
Confidence             35566777888889999999999999999999999999999999999999985

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.82  E-value=0.00033  Score=65.54  Aligned_cols=133  Identities=11%  Similarity=0.029  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhh
Q 019956           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (333)
Q Consensus        45 ~~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  124 (333)
                      ++..+..++..+.++.+.+..|...      ++|.+.++.....-++.+..+... .++.    ++.   ..+..+...+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~-~~~~----~~~---~~~~~~~~~~  216 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFG------VDGLSVLLPQAIGMVIGGIIFNLG-HILA----KPL---KKYAILLNIL  216 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcC------CCcceehhHHHHHHHHHHHHHHHH-Hhcc----cch---HHHHHHHHHH
Confidence            4455566666788888888888652      556555444443222223332211 2111    110   1223334455


Q ss_pred             hHHHHHHHHHHHHHHHH-cCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHH----HHHHHHHhhhhcccc
Q 019956          125 PAVLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQL  191 (333)
Q Consensus       125 pally~~~n~l~~~al~-~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw----~al~ll~~Gv~~v~~  191 (333)
                      .+++..+.|.+++.+.+ ++++++..++.+..|+..++++++++||+.+++|+    .+.++...|+.++..
T Consensus       217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            88888889999999999 99999999999999999999999999999999999    999999999887653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.75  E-value=0.0015  Score=61.23  Aligned_cols=63  Identities=13%  Similarity=0.102  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       130 ~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      .+...+.+.+++++++.+.+.+..+.|++.+++++++++|+++..||+|..+.++|+.+...+
T Consensus       226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            357778889999999999999999999999999999999999999999999999999887654

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.71  E-value=0.002  Score=60.54  Aligned_cols=65  Identities=20%  Similarity=0.328  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccc
Q 019956          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (333)
Q Consensus       127 lly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~  191 (333)
                      +++.+.+.+.+.|+.+.|++..+=+....+++.++++..++|||+++++|.|..+.++|..++..
T Consensus        58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            34678999999999999999999999999999999999999999999999999999999887654

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.71  E-value=0.00039  Score=56.30  Aligned_cols=71  Identities=11%  Similarity=0.178  Sum_probs=62.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHH-HhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~~~~vl-~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      ..+..++|.++..+...+++++|.+....+ ...-.+.+++.+++++||+++..|++++.+.++|+..+...
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            355667789999999999999999965555 57999999999999999999999999999999999988654

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.65  E-value=0.00036  Score=57.35  Aligned_cols=68  Identities=12%  Similarity=0.024  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHH--HhcCccCHHHHHHHHHHHhhhhcccccCC
Q 019956          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRI--ILKKKLSEIQWAAFILLCCGCTTAQLNSN  194 (333)
Q Consensus       127 lly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l--~Lkekls~~qw~al~ll~~Gv~~v~~~~~  194 (333)
                      ++|.+...+...+++.+|++...-+.+..+..+++.++.  ++||++|+.||+++.+.++|+.++..++.
T Consensus        56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            347889999999999999999998888888888888885  89999999999999999999999876533

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.65  E-value=0.00049  Score=54.42  Aligned_cols=70  Identities=13%  Similarity=0.212  Sum_probs=61.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChh-HHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~-~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~  191 (333)
                      ..+..+.|.++..+...+++.+|.+ .|.+-...-.+.+++.+++++||++++.|++++.+..+|+..+..
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            3445667899999999999999988 566666799999999999999999999999999999999988754

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.65  E-value=0.0012  Score=61.98  Aligned_cols=144  Identities=16%  Similarity=0.139  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhH
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  126 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipa  126 (333)
                      +++++++-.+..+.+.+.-+...+  +++.++...++...+..+++.......-...+.....+....++.......+-+
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~--~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s  232 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFK--KYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS  232 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence            677777777788888877654332  233457888888888888776665531001111101111112222223334445


Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       127 lly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      +..++.+...+.-.+..++.+..++..++-+.+.++|.++.++++++.||.|+++.+.|..+-...
T Consensus       233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence            555566666677789999999999999999999999999999999999999999999999876544

; GO: 0055085 transmembrane transport

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.63  E-value=0.056  Score=51.72  Aligned_cols=167  Identities=12%  Similarity=0.011  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccchhhhhhhh
Q 019956           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDEVIVYPI  124 (333)
Q Consensus        46 ~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~i  124 (333)
                      ..++.+++-.+.+++..+-.|..|+..=+.|+. ...++.+++--.. ...+    ..+..  ..... .+.+....-.+
T Consensus         7 ~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~-v~gi~~wl~~~~~-~g~~----~~~~f--~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          7 LGIIWHLIGGASSGSFYAPFKKVKKWSWETMWS-VGGIFSWLILPWL-IAAL----LLPDF--WAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             HHHHHHHHHHHHhhcccccccccCCCchhHHHH-HHHHHHHHHHHHH-HHHH----HhhhH--HHHHHhcCHHHHHHHHH
Confidence            467788888999999999988866543344544 2223333332111 0111    00000  00111 23455556677


Q ss_pred             hHHHHHHHHHHHHHHHHcCChh-HHHHHHhhHHHHHHHHHHHHhcCcc---CH----HHHHHHHHHHhhhhcccc----c
Q 019956          125 PAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKL---SE----IQWAAFILLCCGCTTAQL----N  192 (333)
Q Consensus       125 pally~~~n~l~~~al~~l~~~-~~~vl~~~k~l~talls~l~Lkekl---s~----~qw~al~ll~~Gv~~v~~----~  192 (333)
                      -+++..+.|..++.+.+++..+ +.-+-..+..+..+++..++++|=-   +.    .-..|+++..+|+.+...    .
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k  158 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK  158 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            8888999999999999999988 5556668889999999999988532   33    345677788889888776    3


Q ss_pred             CCCC----ccccchhhHHHHHHHHHHHHHHHH
Q 019956          193 SNSD----RVLQTPLQGWIMAIVMALLSGFAG  220 (333)
Q Consensus       193 ~~~~----~~~~~~~~G~~l~l~aa~~sala~  220 (333)
                      +..+    ....+...|+...+++.+.+++++
T Consensus       159 ~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        159 ERKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             ccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            2211    122356789999999999999999

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.62  E-value=0.00057  Score=54.38  Aligned_cols=69  Identities=16%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChh-HHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~-~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~  190 (333)
                      ..+..+.|.++..+.-.+++++|.+ .|.+-...-.+.+++.+++++||++++.|++++.+.+.|+....
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            4555667889999999999999988 56666778999999999999999999999999999999998764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.61  E-value=0.003  Score=59.17  Aligned_cols=65  Identities=8%  Similarity=-0.025  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       128 ly~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      .-.+...+.+.+++++|++..+.+....|++..++++++++|++++.|+.+..+.++|+.++..+
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34578889999999999999999999999999999999999999999999999998888877654

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.61  E-value=0.00056  Score=53.79  Aligned_cols=70  Identities=19%  Similarity=0.252  Sum_probs=62.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChh-HHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~-~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~  191 (333)
                      ..+..+.|.++..+.-.+++++|.+ .|.+-...-++.|++.+++++||++++.|++++.+..+|+.....
T Consensus        33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            4556667888999999999999988 677778899999999999999999999999999999999987654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.56  E-value=0.00074  Score=53.89  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHH-HhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~~~~vl-~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      ....-+.|.++..+...+++.+|.+....+ ...-.+.+++.+++++||++++.|++++.+.++|+..+...
T Consensus        33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            344566688899999999999999865555 66899999999999999999999999999999999988654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.41  E-value=0.0041  Score=56.20  Aligned_cols=60  Identities=18%  Similarity=0.209  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcc
Q 019956          130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (333)
Q Consensus       130 ~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v  189 (333)
                      .+-..+..++++.+|..+|.++.++.|.+.|+..+++|+|++|..||+++.+...+.+=.
T Consensus       221 alPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         221 ALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             ccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            456778889999999999999999999999999999999999999999999887776633

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.35  E-value=0.004  Score=57.29  Aligned_cols=124  Identities=12%  Similarity=0.014  Sum_probs=90.3

Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhh
Q 019956           41 LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI  120 (333)
Q Consensus        41 ~~~~~~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~  120 (333)
                      +.+.++....+++-++.+..+..+.|+...      ++.+ .++-+.+.++++..++.  ...+   ...+.    |..+
T Consensus       133 ~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~------~~~~-~~lPqaiGm~i~a~i~~--~~~~---~~~~~----k~~~  196 (269)
T PF06800_consen  133 KSNMKKGILALLISTIGYWIYSVIPKAFHV------SGWS-AFLPQAIGMLIGAFIFN--LFSK---KPFFE----KKSW  196 (269)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhcCC------ChhH-hHHHHHHHHHHHHHHHh--hccc---ccccc----cchH
Confidence            345556677777788899999999888533      3433 34455566666544442  1111   11111    2334


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHH
Q 019956          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFI  180 (333)
Q Consensus       121 ~~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~  180 (333)
                      +-.++++++.+.|.+.+++.+..-.++.-.++|+.++..++.+.++|||+=+++++..++
T Consensus       197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            457899999999999999999999999999999999999999999999999999886544

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=97.19  E-value=0.01  Score=54.17  Aligned_cols=125  Identities=11%  Similarity=0.144  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHH-hhhhhh-hhcCccccchHH--HHHHH
Q 019956          204 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI-QDFDAV-MNKGFFHGYSFI--TVLMI  279 (333)
Q Consensus       204 ~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~~g~~~~--~~~~i  279 (333)
                      .|++++++++++||..++..|. ..+.   ++......=.+++.++.++.... .+++.. .+....+.....  .....
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~---~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   77 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL---PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG   77 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC---CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence            3889999999999999999987 3332   23322222233444443332211 121110 000000000111  11111


Q ss_pred             HHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          280 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       280 ~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +..++...+....+++.+........+..|++++++++++++|+++...++|.
T Consensus        78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~  130 (256)
T TIGR00688        78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAV  130 (256)
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            22445556667778888877777888899999999999999999999998874

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.16  E-value=0.034  Score=50.74  Aligned_cols=77  Identities=22%  Similarity=0.228  Sum_probs=66.1

Q ss_pred             chhhhhhhhhHHHHH-HHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          116 LDEVIVYPIPAVLYL-VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       116 ~~~~~~~~ipally~-~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      ++........+++-. +...+.+.+++..++.....+..+.|++..++++++++|+.+..||.|..+.+.|+.+....
T Consensus       211 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            344445555555555 58899999999999999999999999999999999999999999999999999999887654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.94  E-value=0.002  Score=60.74  Aligned_cols=141  Identities=12%  Similarity=0.101  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCcccccch-hhhhhhh
Q 019956           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL-AALARIWNHEGVTDDNRLSTTLD-EVIVYPI  124 (333)
Q Consensus        47 ~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l-~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i  124 (333)
                      +.+....-++..+.+-++.+....+.+++.++.....-..-+.+++.+ ++..   .+++.....-....|. ....+..
T Consensus       164 G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~---~~~~~~~~~~~~~~~~~~~~~~~~  240 (316)
T KOG1441|consen  164 GFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLD---YVEGNKFVGFLTAPWFVTFLILLL  240 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHh---hhcccceeeeeccccchhhHHHHH
Confidence            444444556677777777766554445667777666555444444444 5442   2222111000111221 2334444


Q ss_pred             hHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccc
Q 019956          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (333)
Q Consensus       125 pally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~  190 (333)
                      -++++...|...|..+..++|-|+++....|-..+-..+++++++++|+.|..|.++.++|+..-.
T Consensus       241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence            558899999999999999999999999999999999999999999999999999999999998754

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.93  E-value=0.0035  Score=50.07  Aligned_cols=69  Identities=17%  Similarity=0.283  Sum_probs=61.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHcCChhHHHHH-HhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcc
Q 019956          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (333)
Q Consensus       121 ~~~ipally~~~n~l~~~al~~l~~~~~~vl-~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v  189 (333)
                      +|.+|-++|.....++|+.+...|.+...-+ +++.-++|++.++++.+|..+++.|+++.+.++|+.+.
T Consensus        43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            4889999999999999999999998865555 69999999999988888888999999999999998764

Many members are annotated as potential transmembrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.85  E-value=0.0056  Score=47.27  Aligned_cols=58  Identities=14%  Similarity=0.167  Sum_probs=36.1

Q ss_pred             hhHHHHHHHHHHHHHHHHcCChhHH-HHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHH
Q 019956          124 IPAVLYLVKNLLQYYIFAYVDAPGY-QILKNLNIISTGVLYRIILKKKLSEIQWAAFIL  181 (333)
Q Consensus       124 ipally~~~n~l~~~al~~l~~~~~-~vl~~~k~l~talls~l~Lkekls~~qw~al~l  181 (333)
                      ..-..|.++..+.-.+++++|.++. .+....-++.+++.+.+++||++|..||.++.+
T Consensus        34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            3344688999999999999999855 556679999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.79  E-value=0.026  Score=46.32  Aligned_cols=107  Identities=18%  Similarity=0.088  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHHHHH
Q 019956          204 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHA  283 (333)
Q Consensus       204 ~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~a  283 (333)
                      .|+++++.++++.+.+.+..|+-+++.++.+...       ..  ....... .            ....+.+..++..+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~-------~~--~~~~~~~-~------------~p~~~i~lgl~~~~   59 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW-------DF--IAALLAF-G------------LALRAVLLGLAGYA   59 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh-------HH--HHHHHHH-h------------ccHHHHHHHHHHHH
Confidence            3788999999999999999998887754311110       00  0000000 0            00125677777788


Q ss_pred             HHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--HcCCCcchhhhccc
Q 019956          284 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVF--LFGFHLSLAFFLGS  332 (333)
Q Consensus       284 ~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~--lfge~lt~~~~lG~  332 (333)
                      ++-.+..+++|..|.....+..+...++..+.++.  +|||++|...++|.
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi  110 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGV  110 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            88888899999888777776666666777777775  89999999999986

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.23  E-value=0.023  Score=53.41  Aligned_cols=108  Identities=13%  Similarity=0.136  Sum_probs=78.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHH
Q 019956          200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI  279 (333)
Q Consensus       200 ~~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i  279 (333)
                      ++..+|+.+.++++++.+.+..++||-.++.+..+..                     +.+...  ..  -.++.+|...
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~---------------------~~~~~~--~~--l~~~~W~~G~   57 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLR---------------------AGSGGR--SY--LRRPLWWIGL   57 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---------------------ccchhh--HH--HhhHHHHHHH
Confidence            3567899999999999999999999987764421110                     000000  00  0134455555


Q ss_pred             HHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          280 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       280 ~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +..++|.++-...+.+++..+..+...++++++.+++..+++|+++...++|.
T Consensus        58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~  110 (300)
T PF05653_consen   58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGC  110 (300)
T ss_pred             HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhH
Confidence            56666766666777889999999999999999999999999999999988885

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.12  E-value=0.13  Score=40.92  Aligned_cols=53  Identities=13%  Similarity=0.078  Sum_probs=42.5

Q ss_pred             HHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          280 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       280 ~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +..++...+...++|+.+-...-...+.+++++.++|+++|||++|...++|.
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi   97 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGV   97 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            33445566777888887766666666688999999999999999999999885

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.94  E-value=0.33  Score=46.39  Aligned_cols=140  Identities=12%  Similarity=-0.017  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 019956           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (333)
Q Consensus        46 ~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ip  125 (333)
                      .+-+++++-.++++.+-++-+..-    ++.++....-.-.+..++++.+....  -+..  +......+++....+..=
T Consensus       168 ~GDll~l~~a~lya~~nV~~E~~v----~~~~~~~~lg~~Glfg~ii~~iq~~i--le~~--~i~~~~w~~~~~~~~v~~  239 (334)
T PF06027_consen  168 LGDLLALLGAILYAVSNVLEEKLV----KKAPRVEFLGMLGLFGFIISGIQLAI--LERS--GIESIHWTSQVIGLLVGY  239 (334)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc----ccCCHHHHHHHHHHHHHHHHHHHHHh--eehh--hhhccCCChhhHHHHHHH
Confidence            344566666777888777766542    22345555555555566665544321  1111  111222222322211111


Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccC
Q 019956          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (333)
Q Consensus       126 ally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~  193 (333)
                      ++.-+....+.-+.++..+|..+++=.-+..+...++..++.|+++++..++|.++..+|..+....+
T Consensus       240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            11223333444566788888888888888899999999999999999999999999999999887653

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00803 nst UDP-galactose transporter

Probab=95.77  E-value=0.17  Score=45.11  Aligned_cols=67  Identities=18%  Similarity=0.135  Sum_probs=60.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~  188 (333)
                      .....+..+++..+..+.++|.|+.+......+.++++++++.++++++++..||.+..+.+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4445566788888999999999999999999999999999999999999999999999999988653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=95.58  E-value=0.14  Score=40.57  Aligned_cols=54  Identities=20%  Similarity=0.227  Sum_probs=43.2

Q ss_pred             HHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          278 MILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       278 ~i~~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      .++....+..+..+..++.++ .........|+++.++|+++|+|+++...++|.
T Consensus        41 g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~   94 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAI   94 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            334444666777788899885 555777889999999999999999999998874

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.15  Score=47.84  Aligned_cols=64  Identities=23%  Similarity=0.364  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          129 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       129 y~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      +.+.+...|.|+.+-|++...-+..+.++..|+++..+||||++....+|.++.++|-.++...
T Consensus        74 m~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   74 MIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            6789999999999999999999999999999999999999999999999999999997766543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.59  E-value=1.6  Score=41.90  Aligned_cols=75  Identities=9%  Similarity=0.158  Sum_probs=56.2

Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHH---HH-hhHHHHHHHHHHHHhcCccC------HHHHHHHHHHHhh
Q 019956          116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQI---LK-NLNIISTGVLYRIILKKKLS------EIQWAAFILLCCG  185 (333)
Q Consensus       116 ~~~~~~~~ipally~~~n~l~~~al~~l~~~~~~v---l~-~~k~l~talls~l~Lkekls------~~qw~al~ll~~G  185 (333)
                      +++...-.+.+++..++|.+.+++-+.++.+...+   +. |+.+++.++-.. +|||+=+      +.-+.++++..+|
T Consensus       257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g  335 (345)
T PRK13499        257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA  335 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence            56767778999999999999999999885443333   55 777788877777 5998876      4446677777777


Q ss_pred             hhcccc
Q 019956          186 CTTAQL  191 (333)
Q Consensus       186 v~~v~~  191 (333)
                      ..++..
T Consensus       336 ~~lig~  341 (345)
T PRK13499        336 ANIVGL  341 (345)
T ss_pred             HHHHhh
Confidence            776654

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=94.36  E-value=2.5  Score=34.96  Aligned_cols=121  Identities=13%  Similarity=-0.000  Sum_probs=70.4

Q ss_pred             HHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHH
Q 019956           54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKN  133 (333)
Q Consensus        54 l~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~~n  133 (333)
                      ..+|...|.-+.+..    +.++..+.+++....+-+.+...+.     ++.  +..+.+   +..+.+...+++-...-
T Consensus        13 i~~q~~~N~~L~~~~----gs~~~as~i~~~~G~i~~~i~~~~~-----~~~--~~~~~~---~~p~w~~lGG~lG~~~V   78 (138)
T PF04657_consen   13 IALQAAFNGQLGKAL----GSPLVASFISFGVGFILLLIILLIT-----GRP--SLASLS---SVPWWAYLGGLLGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHHHHHHHh-----ccc--ccchhc---cCChHHhccHHHHHHHH
Confidence            456666666664443    3344555555555444433333322     221  111111   11223344666666666


Q ss_pred             HHHHHHHHcCChhHHHHHHhhHHHHHHHH-HHH----HhcCccCHHHHHHHHHHHhhhhc
Q 019956          134 LLQYYIFAYVDAPGYQILKNLNIISTGVL-YRI----ILKKKLSEIQWAAFILLCCGCTT  188 (333)
Q Consensus       134 ~l~~~al~~l~~~~~~vl~~~k~l~tall-s~l----~Lkekls~~qw~al~ll~~Gv~~  188 (333)
                      .+..+....+.++...++.-+--+..+++ =.+    .-|+++++.|.+++.+..+|+.+
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            67777778899887776665544444444 443    46799999999999999999863

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.04  E-value=0.091  Score=47.18  Aligned_cols=68  Identities=13%  Similarity=0.173  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccc
Q 019956          124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (333)
Q Consensus       124 ipally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~  191 (333)
                      ..++.-.+...+.|.-..+..|-+-+++..++-.+|-+.|+++++..++.+||++-.+.|.|...=..
T Consensus       246 l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  246 LLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV  313 (337)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence            34444577888889999999999999999999999999999999999999999999999998766443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.88  E-value=0.0043  Score=55.84  Aligned_cols=247  Identities=11%  Similarity=0.114  Sum_probs=142.2

Q ss_pred             HHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 019956           53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK  132 (333)
Q Consensus        53 ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~~  132 (333)
                      +=.+.|++-+++   ....|+.+++..--   .-+-++++++...   +-..+     .  .+++....-.+.+++....
T Consensus         9 ~P~l~WGsip~v---~~k~GG~p~qQ~lG---tT~GALifaiiv~---~~~~p-----~--~T~~~~iv~~isG~~Ws~G   72 (288)
T COG4975           9 LPALGWGSIPLV---ANKFGGKPYQQTLG---TTLGALIFAIIVF---LFVSP-----E--LTLTIFIVGFISGAFWSFG   72 (288)
T ss_pred             HHHHHhccccee---eeecCCChhHhhhh---ccHHHHHHHHHHh---eeecC-----c--cchhhHHHHHHhhhHhhhh
Confidence            346789998887   44444555554433   3344555665555   22111     1  2356666777888889999


Q ss_pred             HHHHHHHHHcCChhHHHHH-HhhHHHHHHHHHHHHhcCccCHHHH----HHHHHHHhhhhcccccCCCCc---cccchhh
Q 019956          133 NLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQLNSNSDR---VLQTPLQ  204 (333)
Q Consensus       133 n~l~~~al~~l~~~~~~vl-~~~k~l~talls~l~Lkekls~~qw----~al~ll~~Gv~~v~~~~~~~~---~~~~~~~  204 (333)
                      ...+|-+.+++..+...=+ ..++.+-+.+++++.++|--+..|.    .|+++..+|+.+...++..++   ..++.-.
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kk  152 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKK  152 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhh
Confidence            9999999999888766544 4677889999999999998888875    578888889888766543222   1234556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHH---H
Q 019956          205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL---N  281 (333)
Q Consensus       205 G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~---~  281 (333)
                      |+...+.+.+..-.+.|..+... -..-+-+.-|.+-|.+.++.++.     ...+..        .+..+|.-++   .
T Consensus       153 gi~~L~iSt~GYv~yvvl~~~f~-v~g~saiLPqAiGMv~~ali~~~-----~~~~~~--------~~K~t~~nii~G~~  218 (288)
T COG4975         153 GIVILLISTLGYVGYVVLFQLFD-VDGLSAILPQAIGMVIGALILGF-----FKMEKR--------FNKYTWLNIIPGLI  218 (288)
T ss_pred             heeeeeeeccceeeeEeeecccc-ccchhhhhHHHHHHHHHHHHHhh-----cccccc--------hHHHHHHHHhhHHH
Confidence            88887778877777777665432 11111234333333332222221     111111        1223333332   3


Q ss_pred             HHHHhHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHcCCCcchhhhc
Q 019956          282 HALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFL  330 (333)
Q Consensus       282 ~a~gg~~v~~v~k~~~~i~k~~~-~~~~~v~t~lls~~lfge~lt~~~~l  330 (333)
                      -++|.+..-+.-+..+ +...|. +....+++++-++++++|+=|...+.
T Consensus       219 Wa~GNl~ml~a~~~~G-vAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~  267 (288)
T COG4975         219 WAIGNLFMLLAAQKVG-VATSFSLSQLGVIISTIGGILFLGEKKTKKEMV  267 (288)
T ss_pred             HHhhHHHHHHhhhhhc-eeeeeeHhhheeeeeecceEEEEeccCchhhhh
Confidence            3444432221111111 111111 23445888888899999987765543

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=93.83  E-value=3.5  Score=38.35  Aligned_cols=129  Identities=14%  Similarity=0.064  Sum_probs=89.9

Q ss_pred             HHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHH
Q 019956           53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLK-CALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLV  131 (333)
Q Consensus        53 ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~k-l~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~  131 (333)
                      .+++-++.+.++-|..+.+      +.+ -++-|.+- +..++..+.  +-+...  .--...+......+...|..-++
T Consensus       155 ~la~sf~~Ygl~RK~~~v~------a~~-g~~lE~l~l~p~al~yl~--~l~~~~--~~~~~~~~~~~~LLv~aG~vTav  223 (293)
T COG2962         155 ALALSFGLYGLLRKKLKVD------ALT-GLTLETLLLLPVALIYLL--FLADSG--QFLQQNANSLWLLLVLAGLVTAV  223 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCc------hHH-hHHHHHHHHhHHHHHHHH--HHhcCc--hhhhcCCchHHHHHHHhhHHHHH
Confidence            4566677777776665332      333 34445443 444555442  222211  00011234555666677777777


Q ss_pred             HHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          132 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       132 ~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      --.++-.|-+.+|-++.-++....|...-+++++++||+++..|+.+.+..-+|+++...+
T Consensus       224 pL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         224 PLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999999999999999999999999998877644

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.78  E-value=0.63  Score=43.42  Aligned_cols=108  Identities=18%  Similarity=0.229  Sum_probs=79.2

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC------cccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChh
Q 019956           73 KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN------RLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAP  146 (333)
Q Consensus        73 ~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~ipally~~~n~l~~~al~~l~~~  146 (333)
                      ++..++...++-..+...+.+..-+   . .++. ..+      +.+.-++|.++|...+   ++..++.|.-++...+-
T Consensus       197 ~~k~s~~~mM~~vNLf~~i~~~~~l---i-~qg~-~~~av~F~~~hp~~~~Di~l~s~~g---avGQ~FI~~TI~~FGsl  268 (327)
T KOG1581|consen  197 KYKVSSLHMMFGVNLFSAILNGTYL---I-LQGH-LLPAVSFIKEHPDVAFDILLYSTCG---AVGQLFIFYTIERFGSL  268 (327)
T ss_pred             cCCccHhHHHHHHHHHHHHHHHHhh---h-cCCC-CchHHHHHHcChhHHHHHHHHHHhh---hhhhheehhhHhhcccH
Confidence            5556677777777777666655443   1 2221 111      1112235655555444   78888888999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhc
Q 019956          147 GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (333)
Q Consensus       147 ~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~  188 (333)
                      ++..+.-++=++.-+++.++.+++++..||.++.+.|.|...
T Consensus       269 t~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  269 TFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            999999999999999999999999999999999988888765

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=91.83  E-value=0.018  Score=51.87  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=80.3

Q ss_pred             HHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 019956           53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK  132 (333)
Q Consensus        53 ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~~  132 (333)
                      .-++.+..+.++.+.-..+|-      + .++-..+.++++...+-   ..++  ++    +.-|+.++-.+|+++..+.
T Consensus       159 iSt~GYv~yvvl~~~f~v~g~------s-aiLPqAiGMv~~ali~~---~~~~--~~----~~~K~t~~nii~G~~Wa~G  222 (288)
T COG4975         159 ISTLGYVGYVVLFQLFDVDGL------S-AILPQAIGMVIGALILG---FFKM--EK----RFNKYTWLNIIPGLIWAIG  222 (288)
T ss_pred             eeccceeeeEeeeccccccch------h-hhhHHHHHHHHHHHHHh---hccc--cc----chHHHHHHHHhhHHHHHhh
Confidence            345566666666555443332      2 23334456666655552   2221  11    1135566678999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHH
Q 019956          133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFI  180 (333)
Q Consensus       133 n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~  180 (333)
                      |...+.+.+....++.--++|+-++..++-..++||||=++++|..+.
T Consensus       223 Nl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~  270 (288)
T COG4975         223 NLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVI  270 (288)
T ss_pred             HHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhh
Confidence            999999999999999999999999999999999999999999987654

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=91.63  E-value=1.6  Score=33.47  Aligned_cols=52  Identities=31%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             HHHHHhHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          281 NHALSGIAVSMVMKYADNIVKVY-STSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       281 ~~a~gg~~v~~v~k~~~~i~k~~-~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ..++.-.+.+..+|+.+-.+.-. .+..+.+.++++|.++|||++|...++|.
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi   90 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGI   90 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhe
Confidence            44445566777787755433322 24577899999999999999999999885

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=90.71  E-value=1.3  Score=35.23  Aligned_cols=55  Identities=22%  Similarity=0.283  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          277 LMILNHALSGIAVSMVMKYADNIVKVYS--TSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       277 ~~i~~~a~gg~~v~~v~k~~~~i~k~~~--~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ..++.-++.-.+.+.++|+.+ +-..++  +..+.+.++++|+++|||++|+..++|.
T Consensus        35 ~~~~~~~~sf~~l~~al~~ip-l~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi   91 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIP-TGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGM   91 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            344444555556677777744 333444  4467899999999999999999999875

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=89.63  E-value=1.7  Score=35.23  Aligned_cols=55  Identities=31%  Similarity=0.372  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          277 LMILNHALSGIAVSMVMKYADNIVKVYS--TSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       277 ~~i~~~a~gg~~v~~v~k~~~~i~k~~~--~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ..++.-++.-.+.+.++|+.+- -..++  +..+.+.++++|+++|||++|+..++|.
T Consensus        35 ~~i~~~~~sf~~ls~al~~lpl-siAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi   91 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIAL-GVAYALWEGIGILFITLFSVLLFDESLSLMKIAGL   91 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            3444555566677778877553 33333  4577899999999999999999998875

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=88.58  E-value=19  Score=32.76  Aligned_cols=128  Identities=16%  Similarity=0.105  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHH-HHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhh
Q 019956           46 RKSVVTLALTVLTSSQAILI-VWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (333)
Q Consensus        46 ~~~~~l~ll~l~~~~~~ll~-~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  124 (333)
                      .+.+..++.++..+.+.+.. |.-|+.+ .  +...-+.--.+...++.+....  .++.....+......|...  ..+
T Consensus       114 ~G~~~vl~~~~~S~~agVy~E~~lK~~~-~--s~~~~N~qL~~~gi~~~~~~~~--~~~~~~~~~~g~f~G~~~~--~~~  186 (244)
T PF04142_consen  114 LGLLAVLAAAFLSGFAGVYFEKLLKRSN-V--SLWIQNMQLYLFGILFNLLALL--LSDGSAISESGFFHGYSWW--VWI  186 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccc-h--hHHHHHHHHHHHHHHHHHHHHh--cccccccccCCchhhcchH--HHH
Confidence            45555555666777777776 4444332 1  2222222222333333333331  2211110111111223222  234


Q ss_pred             hHHHHHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHH
Q 019956          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFI  180 (333)
Q Consensus       125 pally~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~  180 (333)
                      +-++.++...+.-..++|.|.-.=.......++.+++++.++++.++|....+|..
T Consensus       187 ~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~  242 (244)
T PF04142_consen  187 VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA  242 (244)
T ss_pred             HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence            55567888888888999999999999999999999999999999999987766543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=87.83  E-value=4.9  Score=36.13  Aligned_cols=132  Identities=8%  Similarity=0.070  Sum_probs=88.3

Q ss_pred             HHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc--cchhhhhhhhhHHHHHH
Q 019956           54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST--TLDEVIVYPIPAVLYLV  131 (333)
Q Consensus        54 l~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~ipally~~  131 (333)
                      =++-.+...+.+|--  -.-..+.....++-..++.+.+.+.+-+  .-++. ++. .+..  ....+..+.+.+++-..
T Consensus       163 NclssaafVL~mrkr--i~ltNf~d~dtmfYnNllslPiL~~~s~--~~edw-s~~-n~annl~~d~l~am~ISgl~svg  236 (309)
T COG5070         163 NCLSSAAFVLIMRKR--IKLTNFKDFDTMFYNNLLSLPILLSFSF--LFEDW-SPG-NLANNLSVDSLMAMFISGLCSVG  236 (309)
T ss_pred             hhHhHHHHHHHHHHh--hcccccchhhHHHHhhhHHHHHHHHHHH--HhccC-Ccc-hhhcCCChHHHHHHHHHHHHHhh
Confidence            344444445555431  1122333455577777776665444432  12222 111 1111  12445678888888777


Q ss_pred             HHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccc
Q 019956          132 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (333)
Q Consensus       132 ~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~  191 (333)
                      -..+.-|-++-++..+++++..++-+..++-..+++++..+.....+++++++..++-..
T Consensus       237 iSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav  296 (309)
T COG5070         237 ISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV  296 (309)
T ss_pred             hhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            778888888999999999999999999999999999999999999999999877666443

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=87.30  E-value=13  Score=29.48  Aligned_cols=53  Identities=21%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             HHHHHHHhHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          279 ILNHALSGIAVSMVMKYADNIVKVYS--TSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       279 i~~~a~gg~~v~~v~k~~~~i~k~~~--~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      +..-++.-.+.+.++|+.+ +-..++  +-.+.+.++++|+++|||++|+..++|.
T Consensus        42 ~~~~~~sf~~Ls~al~~lp-vgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi   96 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGID-LSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGL   96 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3445555667778887644 333344  4566799999999999999999998874

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=86.82  E-value=3.1  Score=32.84  Aligned_cols=56  Identities=36%  Similarity=0.470  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          276 VLMILNHALSGIAVSMVMKYADNIVKVYS--TSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       276 ~~~i~~~a~gg~~v~~v~k~~~~i~k~~~--~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      .+.++...+.-.+.+..+|+.+ +-..++  +-..++.+++.|+++|||+++...++|.
T Consensus        34 il~~v~~~~sf~~Ls~alk~ip-vgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl   91 (106)
T COG2076          34 ILTIVGYGLSFYLLSLALKTIP-LGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGL   91 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            3344445555566778888754 333333  5577899999999999999999988774

>PRK11431 multidrug efflux system protein; Provisional

Probab=85.81  E-value=4.3  Score=32.01  Aligned_cols=53  Identities=21%  Similarity=0.229  Sum_probs=37.5

Q ss_pred             HHHHHHHhHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          279 ILNHALSGIAVSMVMKYADNIVKVYS--TSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       279 i~~~a~gg~~v~~v~k~~~~i~k~~~--~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ++.-++.-.+.+..+|+.+ +-..++  +-.+.+.++++|+++|||++|+..++|.
T Consensus        36 i~~~~~sf~~Ls~al~~ip-~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi   90 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLP-VGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSL   90 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCC-cHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            3344555556677777644 222333  5567899999999999999999998874

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=85.24  E-value=8.8  Score=30.22  Aligned_cols=67  Identities=16%  Similarity=0.211  Sum_probs=51.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHHhhHHHHHHHHHHHHhcCccC-HHHHHHHHHHHhhhhc
Q 019956          121 VYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLS-EIQWAAFILLCCGCTT  188 (333)
Q Consensus       121 ~~~ipally~~~n~l~~~al~~l~~~-~~~vl~~~k~l~talls~l~Lkekls-~~qw~al~ll~~Gv~~  188 (333)
                      .|.+|-+++-..+.++|.-++..|-+ ..-+.+++...+|+++...+ ||+.. .+-.++..+.++|..+
T Consensus        54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~L  122 (125)
T KOG4831|consen   54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWL  122 (125)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhh
Confidence            48899999999999999999999877 45567788999999999875 65554 4455666666666544

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=83.46  E-value=2.8  Score=38.60  Aligned_cols=125  Identities=8%  Similarity=0.068  Sum_probs=84.3

Q ss_pred             HHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHH
Q 019956           52 LALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLV  131 (333)
Q Consensus        52 ~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ipally~~  131 (333)
                      +.-++..++-.++.|+--++-++-.+.+-...+.-+..++.+..+-           .-.+...+|+.+.+...|+.-++
T Consensus       197 i~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig-----------~~~lP~cgkdr~l~~~lGvfgfi  265 (346)
T KOG4510|consen  197 ISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIG-----------AVQLPHCGKDRWLFVNLGVFGFI  265 (346)
T ss_pred             HHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhcc-----------ceecCccccceEEEEEehhhhhH
Confidence            3445556666667777633333333333333333333333322221           11222345666777888888899


Q ss_pred             HHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhh
Q 019956          132 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT  187 (333)
Q Consensus       132 ~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~  187 (333)
                      ...+...++|-=-++-.++...+.+++.-+.=.+++|+--+++.|.+.++......
T Consensus       266 gQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v  321 (346)
T KOG4510|consen  266 GQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV  321 (346)
T ss_pred             HHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence            99999999999999999999999999999999999999999999988765544433

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.63  E-value=28  Score=29.29  Aligned_cols=71  Identities=14%  Similarity=-0.008  Sum_probs=41.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhHHHHH-HhhHHHHHHHHHHHHh----cCccCHHHHHHHHHHHhhhhccccc
Q 019956          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIIL----KKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       122 ~~ipally~~~n~l~~~al~~l~~~~~~vl-~~~k~l~talls~l~L----kekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      ..+.+++-...-...-.....+-+++.+.+ ..-+.+.-.++=.+=+    +++++..++.++++..+|+.+++..
T Consensus        72 ~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          72 AWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             HHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence            444454433333333344456666654443 3444454444443333    4999999999999999997766543

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=81.32  E-value=29  Score=28.60  Aligned_cols=122  Identities=13%  Similarity=0.167  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHHHHHHH
Q 019956          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS  285 (333)
Q Consensus       206 ~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~a~g  285 (333)
                      .++.+.+-.+-++.+..+-++-|+..  +++..++.-...|.+...+..+..+.....   -..+.++|.|..-+..++.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~---~~~~~p~w~~lGG~lG~~~   77 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLA---SLSSVPWWAYLGGLLGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccc---hhccCChHHhccHHHHHHH
Confidence            45667777788888888888877754  356555665666666666555443322111   1234467777665555555


Q ss_pred             hHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHH-Hc---CCCcchhhhccc
Q 019956          286 GIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVF-LF---GFHLSLAFFLGS  332 (333)
Q Consensus       286 g~~v~~v~k~~~~i~k~~~-~~~~~v~t~lls~~-lf---ge~lt~~~~lG~  332 (333)
                      -....+.+...+....... ..-.++.+.++..+ +|   .++++...++|.
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~  129 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGL  129 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHH
Confidence            5555566665554444333 23345667777765 44   355777766664

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.11  E-value=2  Score=40.45  Aligned_cols=107  Identities=15%  Similarity=0.170  Sum_probs=79.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCccccchHHHHHHHH
Q 019956          201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL  280 (333)
Q Consensus       201 ~~~~G~~l~l~aa~~sala~v~~e~~lk~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~  280 (333)
                      +..+|.++.+.+++.-|..-+..||-+++...                     .-.++++    .|+-.-..++.|..++
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---------------------~~~ra~~----gg~~yl~~~~Ww~G~l   72 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---------------------SGLRAGE----GGYGYLKEPLWWAGML   72 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHHHhh---------------------hcccccC----CCcchhhhHHHHHHHH
Confidence            45678888888888777777777766655221                     0012111    1111112467888899


Q ss_pred             HHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          281 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       281 ~~a~gg~~v~~v~k~~~~i~k~~~~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ..++|-+.-...+-++.+++..+..+++++.+++++..+++|+++..-.+|.
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc  124 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGC  124 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence            9999998888888889999999999999999999999999999998877774

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=80.97  E-value=45  Score=32.36  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHH-HH-HhhcCCCCCCcccccchhhhhh
Q 019956           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALA-RI-WNHEGVTDDNRLSTTLDEVIVY  122 (333)
Q Consensus        45 ~~~~~~l~ll~l~~~~~~ll~~~s~~~~~~~~~~~~~v~l~e~~kl~i~l~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~  122 (333)
                      .++-++-.+-++.++.+..+.|.--.+.+.+.+.-..-=...+.-+++..+.+. .. ..++.    -.++... .....
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~----F~lP~~~-q~~~v  320 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEER----FELPSST-QFSLV  320 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCc----ccCCCCc-eeEee
Confidence            345556666688899998888764333323333222111122333333322111 11 11111    1121112 22223


Q ss_pred             hhhHHH-HHHHHHHHHHHHHcCChhHHHHHHhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhcccccCC
Q 019956          123 PIPAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN  194 (333)
Q Consensus       123 ~ipall-y~~~n~l~~~al~~l~~~~~~vl~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~~~  194 (333)
                      .+-+++ -+++..+.-.|.-..++-+..+-....+....+.=.++-+++.|+.+.+|-+..++|..++..+++
T Consensus       321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            333444 457999999999999999999999999988888888888999999999999999999888876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.33
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.12
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.29
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.17

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.33  E-value=3e-06  Score=66.56  Aligned_cols=70  Identities=16%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHcCChhHHHHH-HhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       123 ~ipally~~~n~l~~~al~~l~~~~~~vl-~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      ..-.+.|.++..+...+++++|.+....+ ..+.|+.+++++++++||++++.||+++.+..+|+..+...
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34455688889999999999999988777 89999999999999999999999999999999999988764

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.12  E-value=3.2e-06  Score=69.03  Aligned_cols=69  Identities=16%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHHHHHcCChhHHHHH-HhhHHHHHHHHHHHHhcCccCHHHHHHHHHHHhhhhccccc
Q 019956          124 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (333)
Q Consensus       124 ipally~~~n~l~~~al~~l~~~~~~vl-~~~k~l~talls~l~Lkekls~~qw~al~ll~~Gv~~v~~~  192 (333)
                      +-.+.|.+...+...+++++|++....+ ..+.|+++++++++++||++++.||+|+.+.++|+.++...
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4445688899999999999999977776 89999999999999999999999999999999999998764

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.29  E-value=0.0085  Score=46.59  Aligned_cols=57  Identities=21%  Similarity=0.238  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          276 VLMILNHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       276 ~~~i~~~a~gg~~v~~v~k~~~~i~k~~~-~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ...++...+...+....+|+.|....... +..++++++++++++|||++|...++|.
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi   91 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGM   91 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            34444556666777888998887766565 7889999999999999999999999885

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.17  E-value=0.0039  Score=50.58  Aligned_cols=57  Identities=21%  Similarity=0.238  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHcCCCcchhhhccc
Q 019956          276 VLMILNHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGS  332 (333)
Q Consensus       276 ~~~i~~~a~gg~~v~~v~k~~~~i~k~~~-~~~~~v~t~lls~~lfge~lt~~~~lG~  332 (333)
                      ++.++..+++..+....+|+.+....... +.+++++++++|+++|||++|+.+++|.
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi   91 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGM   91 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            44555667777788889999887766666 7899999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00