Citrus Sinensis ID: 019963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSGESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccEEEEEEcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEccccccHHcccccccccHccccccccccccccccccccccccccccccccHEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHEccccccccccccccccEEEEEEccccccEEHEcHHHcccHHHHHHHHHHHHcccEEcccccccccccccccHHHHHHHccccccEcEEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
mspppavgeekrgpgnvnllaspasmgsvcqkssvikernymglsdsssmdssvvssvsgessksslnlkatelrlglpgsqspergselcllgpaqldekplfplhptsdshypsqknvvsgnkrgfsdamdgflegkylsssellspraapnlglksgsiqenlgpqtakgkemanqkavqerphvnnetitnhngsasnsssapaakaqvvgwppirsfrknslatssknndevdgkagSSALFVKVSmdgapylrkvdlKNYSKYQELSSALEKMFscftigqygshgalgremlsesklkdllhgsefvltyedkdgdwmlvgdvpwe
Flexible Loop (DISEMBL)
mspppavgeekrgpgnvnllaspasmgsvCQKSSVIKERNYmglsdsssmdSSVVSSVsgessksslnlKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHngsasnsssapAAKAQVVGWPPIRSfrknslatssknndevdgkagsSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFvltyedkdgdwmlvgdvpwe
Low Complexity Region (SEG)
MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLsdsssmdssvvssvsgesskssLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGsasnsssapaakaQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE
Disordered region (IsUnstruct)
****************************************************************************************************************************************************************************************************************************************************ALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDV***
Disordered Region (DISOPRED)
***********************************************************************TELRLG*************************************************************************************************************************************************************************FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQY*******************LHGSEFVLTYEDKDGDWMLVGDVPW*
Disordered Region (DISEMBL)
************GPGNVNLLASP********KSSVIKERNYMGL**********************LNLKATELRLGL*********SELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGP****************RPHVNNETITNHN**************QVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE
Disordered Region (DISPRO)
*****AV*****GPGNV*******SMG**C*KSSVIK*R*Y*GL*********************SLNLKATELRLGLPG*********************PLF******************************************************************************************************PAAKAQVVGWPPIRSFRKNSLATSS***********SSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGS**A**REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSGESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
Q38826	321	Auxin-responsive protein	yes	no	0.804	0.834	0.609	2e-87
Q38827	338	Auxin-responsive protein	no	no	0.819	0.807	0.578	5e-87
Q9ZSY8	305	Auxin-responsive protein	no	no	0.780	0.852	0.474	1e-62
P0C132	277	Auxin-responsive protein	yes	no	0.396	0.476	0.633	4e-41
Q38832	228	Auxin-responsive protein	no	no	0.567	0.828	0.400	9e-41
Q5Z749	266	Auxin-responsive protein	no	no	0.363	0.454	0.634	5e-40
P13089	243	Auxin-induced protein AUX	no	no	0.381	0.522	0.620	7e-40
Q6AT33	281	Auxin-responsive protein	no	no	0.627	0.743	0.417	8e-40
O24407	236	Auxin-responsive protein	no	no	0.375	0.529	0.584	3e-39
Q38825	243	Auxin-responsive protein	no	no	0.585	0.802	0.415	3e-38

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  322 bits (826), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/305 (60%), Positives = 212/305 (69%), Gaps = 37/305 (12%)

Query: 33  SSVIKERNYMGLSDSSSMDSSVVSSVSGESSKSSLNLKATELRLGLPGSQSPERGSELCL 92
           S  +KERNY+GLSD SS+DSS + +V G   KS+LN KATELRLGLP SQSPER ++  L
Sbjct: 16  SPCLKERNYLGLSDCSSVDSSTIPNVVG---KSNLNFKATELRLGLPESQSPERETDFGL 72

Query: 93  LGPAQLDEKPLFPLHPTSD--SHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPR 150
           L P   DEK LFPL P+ D  S     KNVVSGNKRGF+D  D F       S    S R
Sbjct: 73  LSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEF-------SGVKGSVR 125

Query: 151 AAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQE-RPHVNNETITNHNGSASNSSSAPAA 209
                    G I   L P+    K+++  K++QE R H          G  +N   APAA
Sbjct: 126 PG-------GGINMMLSPKV---KDVS--KSIQEERSHAK--------GGLNN---APAA 162

Query: 210 KAQVVGWPPIRSFRKNSLATS-SKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSK 268
           KAQVVGWPPIRS+RKN++A+S SKN DEVDGK G   LFVKVSMDGAPYLRKVDL+ Y+ 
Sbjct: 163 KAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTS 222

Query: 269 YQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVG 328
           YQ+LSSALEKMFSCFT+GQ G HGA GRE +SE KLKDLLHGSEFVLTYEDKDGDWMLVG
Sbjct: 223 YQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVG 282

Query: 329 DVPWE 333
           DVPWE
Sbjct: 283 DVPWE 287

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  321 bits (823), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 173/299 (57%), Positives = 215/299 (71%), Gaps = 26/299 (8%)

Query: 36  IKERNYMGLSDSSSMDSSVVSSVSGESSKSSLNLKATELRLGLPGSQSPERGSELCLLGP 95
           +KE NY+GLSD SS+ SS +S ++ E  K++++LKATEL LGLPGSQSP R +EL LL P
Sbjct: 31  LKEHNYLGLSDCSSVGSSTLSPLA-EDDKATISLKATELTLGLPGSQSPARDTELNLLSP 89

Query: 96  AQLDEKPLFPLHPTSDSHYPS-QKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPN 154
           A+LDEKP FPL P+ D    S QKN  SGNKRGFSD MD F E K    +E         
Sbjct: 90  AKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAKSSVYTE--------- 140

Query: 155 LGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVV 214
                   +  + P+ A  + +  +   Q  P          + + +NSSS PAAKAQ+V
Sbjct: 141 --------KNWMFPEAAATQSVTKKDVPQNIPK-------GQSSTTNNSSSPPAAKAQIV 185

Query: 215 GWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSS 274
           GWPP+RS+RKN+LAT+ KN+DEVDG+ GS ALFVKVSMDGAPYLRKVDL++Y+ Y ELSS
Sbjct: 186 GWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSS 245

Query: 275 ALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           ALEKMF+ FT+GQ GS+GA G++MLSE+KLKDLL+G ++VLTYEDKDGDWMLVGDVPWE
Sbjct: 246 ALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWE 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 147/310 (47%), Positives = 192/310 (61%), Gaps = 50/310 (16%)

Query: 34  SVIKERNYMGLSDSSSMDSSVVSS-VSGESSKSSLNLKATELRLGLPGSQSPERGSELCL 92
           SV  E +Y+GLS+  +M+++ +S       + + LN KATELRLGLPGS+SPER      
Sbjct: 4   SVAAEHDYIGLSEFPTMEATTMSDKTKTRDNNNGLNFKATELRLGLPGSESPER------ 57

Query: 93  LGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAA 152
                +D + L      + S  P     VSG KR FSDA++        S+  + SP + 
Sbjct: 58  -----VDSRFL----ALNKSSCP-----VSGAKRVFSDAIND-------SNKWVFSPGST 96

Query: 153 PNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQ 212
                 +G +    GP+T+  K+   +     +P V  +          +S++APA+KAQ
Sbjct: 97  ----TATGDVGSGSGPRTSVVKD--GKSTTFTKPAVPVK-------EKKSSATAPASKAQ 143

Query: 213 VVGWPPIRSFRKNSLATSSK----NN---DEVDGKAG--SSALFVKVSMDGAPYLRKVDL 263
           VVGWPPIRSFRKNS+A+S      NN   +E + K+G     L+VKVSM+GAPYLRK+DL
Sbjct: 144 VVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDL 203

Query: 264 KNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD 323
           K Y  Y ELSSALEKMFSCFTIGQ+GSHG  GR+ L+ES+L DLL GSE+V+TYEDKD D
Sbjct: 204 KTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSD 263

Query: 324 WMLVGDVPWE 333
           WMLVGDVPWE
Sbjct: 264 WMLVGDVPWE 273

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  168 bits (426), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 101/142 (71%), Gaps = 10/142 (7%)

Query: 199 SASNSSSAPAAKAQVVGWPPIRSFRKNSLAT-SSKNNDEVDGKAGSSAL------FVKVS 251
           +A++     A KAQVVGWPP+RS+RKN LA  + K  D  DG    S        FVKVS
Sbjct: 107 AAADPEKPRAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVS 166

Query: 252 MDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGS 311
           MDGAPYLRKVDLK Y  Y ELS ALEKMFS FTIG  GSHG  G   ++ESK+ DLL+GS
Sbjct: 167 MDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG---MNESKIADLLNGS 223

Query: 312 EFVLTYEDKDGDWMLVGDVPWE 333
           E+V TYEDKDGDWMLVGDVPWE
Sbjct: 224 EYVPTYEDKDGDWMLVGDVPWE 245

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  167 bits (423), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 109/272 (40%), Positives = 140/272 (51%), Gaps = 83/272 (30%)

Query: 67  LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKR 126
           +NLK TEL LGLPG                            T     P++  V  GNKR
Sbjct: 1   MNLKETELCLGLPGG---------------------------TETVESPAKSGV--GNKR 31

Query: 127 GFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERP 186
           GFS+ +D  L                        ++Q N                  ++ 
Sbjct: 32  GFSETVDLKL------------------------NLQSN------------------KQG 49

Query: 187 HVNNETITNHNGSASNSS-----SAPAAKAQVVGWPPIRSFRKNSLATS-SKNNDEVDGK 240
           HV+     N NG+    +     S P AKAQVVGWPP+R++RKN +A   S   +E    
Sbjct: 50  HVD----LNTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSS 105

Query: 241 AGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLS 300
            G +  FVKVSMDGAPYLRKVDLK Y+ Y++LS AL KMFS FT+G YG+ G +  + ++
Sbjct: 106 GGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMN 163

Query: 301 ESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPW 332
           ESK+ DLL+ SE+V +YEDKDGDWMLVGDVPW
Sbjct: 164 ESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPW 195

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z749|IAA21_ORYSJ Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/126 (63%), Positives = 94/126 (74%), Gaps = 5/126 (3%)

Query: 213 VVGWPPIRSFRKNSLATSS-----KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYS 267
           VVGWPPIRS+RKN++A S      K++ E      S  L+VKVSMDGAPYLRKVDLK Y 
Sbjct: 109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYK 168

Query: 268 KYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327
            Y+ELS ALEKMFSCFT+G   S+G  GR+ LS+ +L DL +G+E VLTYEDKD DWMLV
Sbjct: 169 NYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLV 228

Query: 328 GDVPWE 333
           GDVPW 
Sbjct: 229 GDVPWR 234

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/129 (62%), Positives = 95/129 (73%), Gaps = 2/129 (1%)

Query: 205 SAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLK 264
           + P AK QVVGWPP+RSFRKN LA      +E +  +  +A FVKVSMDGAPYLRKVDLK
Sbjct: 83  AKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLK 142

Query: 265 NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDW 324
            Y  Y+ELS +L KMFS FT G   S G   ++ ++ESKL DLL+ S++V TYEDKDGDW
Sbjct: 143 MYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLNDLLNSSDYVPTYEDKDGDW 200

Query: 325 MLVGDVPWE 333
           MLVGDVPWE
Sbjct: 201 MLVGDVPWE 209

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|Q6AT33|IAA19_ORYSJ Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1

 Score =  164 bits (415), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 134/261 (51%), Gaps = 52/261 (19%)

Query: 74  LRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMD 133
           LRLGLPGS+SP R     ++  A L   P  P                 G KRGF D++D
Sbjct: 40  LRLGLPGSESPARAEAEAVVVDAALTLGPAPPPR--------------GGAKRGFVDSLD 85

Query: 134 GFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETI 193
              EG+          RAA   G                           +   V  E  
Sbjct: 86  RS-EGR----------RAAATAG--------------------------DDERGVREEEE 108

Query: 194 TNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATS-SKNNDEVDGKAGSSALFVKVSM 252
                  + + +  AAKAQVVGWPP+RS+RKN+LA S +K   E  GK+     +VKVSM
Sbjct: 109 EEKGLGEAAAGAPRAAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSM 168

Query: 253 DGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSE 312
           DGAPYLRKVDLK YS Y++LS ALEKMFSCF  G+  SH    R+ L++    D L   E
Sbjct: 169 DGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQE 228

Query: 313 FVLTYEDKDGDWMLVGDVPWE 333
           +VLTYEDKD DWMLVGD+PW+
Sbjct: 229 YVLTYEDKDADWMLVGDLPWD 249

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 104/142 (73%), Gaps = 17/142 (11%)

Query: 207 PAAKAQVVGWPPIRSFRKNSLA-------TSSKNNDEVDGKAG--------SSALFVKVS 251
           P AKAQVVGWPP+RSFRKN ++        +++ ND+  G +G        ++  +VKVS
Sbjct: 65  PPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVS 124

Query: 252 MDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGS 311
           MDGAPYLRK+DLK Y  YQ+LS+AL KMFS FTIG YG  G   ++ ++ESKL DLL+GS
Sbjct: 125 MDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGS 182

Query: 312 EFVLTYEDKDGDWMLVGDVPWE 333
           ++V TYEDKDGDWMLVGDVPWE
Sbjct: 183 DYVPTYEDKDGDWMLVGDVPWE 204

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/277 (41%), Positives = 147/277 (53%), Gaps = 82/277 (29%)

Query: 67  LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKR 126
           +NLKATEL LGLPG      G+E                         P++  V  G+KR
Sbjct: 6   MNLKATELCLGLPG------GAEAV---------------------ESPAKSAV--GSKR 36

Query: 127 GFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAV-QER 185
           GFS+ +D  L    L S+             K GS+            ++ N  AV +E+
Sbjct: 37  GFSETVDLMLN---LQSN-------------KEGSV------------DLKNVSAVPKEK 68

Query: 186 PHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLA---TSSKNNDEVDGKAG 242
             + +              S P AKAQVVGWPP+R++RKN +    TSS   +    KAG
Sbjct: 69  TTLKD-------------PSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAG 115

Query: 243 SSAL------FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGR 296
           +          VKVSMDGAPYLRKVDLK Y  YQ+LS AL KMFS FT+G YG+ G +  
Sbjct: 116 NFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI-- 173

Query: 297 EMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           + ++ESKL +LL+ SE+V +YEDKDGDWMLVGDVPWE
Sbjct: 174 DFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWE 210

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
359843557	359	indole-3-acetic acid-induced protein 4 [	0.966	0.896	0.739	1e-130
147816409	359	hypothetical protein VITISV_007399 [Viti	0.966	0.896	0.736	1e-130
225458994	359	PREDICTED: auxin-responsive protein IAA9	0.966	0.896	0.736	1e-130
29465672	359	Aux/IAA protein [Vitis vinifera]	0.966	0.896	0.733	1e-129
302398575	363	ARF domain class transcription factor [M	0.984	0.903	0.732	1e-127
429326556	365	hypothetical protein [Populus tomentosa]	0.990	0.904	0.747	1e-124
20269051	365	aux/IAA protein [Populus tremula x Popul	0.990	0.904	0.744	1e-123
255537856	374	Auxin-responsive protein IAA19, putative	0.981	0.874	0.712	1e-123
224067092	366	predicted protein [Populus trichocarpa]	0.990	0.901	0.744	1e-122
449461351	355	PREDICTED: auxin-responsive protein IAA9	0.963	0.904	0.689	1e-121

>gi|359843557|gb|AEV89794.1| indole-3-acetic acid-induced protein 4 [Vitis vinifera]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/338 (73%), Positives = 277/338 (81%), Gaps = 16/338 (4%)

Query: 1   MSPPP-AVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGEE+ G  NV +LAS ASM SVCQ SS +KERNYMGLS+ SS+DSS +S+ S
Sbjct: 1   MSPPLLGVGEEE-GQSNVTILASSASMESVCQISSGLKERNYMGLSECSSVDSSAISTDS 59

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +KSSLNLKATELRLGLPGS SP R  ELCLL   +LDEKPLFPLHP+ D  Y S QK
Sbjct: 60  -DGNKSSLNLKATELRLGLPGSLSPGREPELCLLSSTKLDEKPLFPLHPSKDLTYTSSQK 118

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKE 175
            VVSGNKRGF+DAM+GF EGK+L++SE   +LSPR +PN        +ENLG Q AK KE
Sbjct: 119 TVVSGNKRGFADAMNGFSEGKFLANSEVNVMLSPRPSPN--------KENLGSQPAKMKE 170

Query: 176 MANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNND 235
           MA+ K VQERP   NET  NH G+ +NSSSAPA KAQVVGWPPIRSFRKN+LAT+SKN  
Sbjct: 171 MASPKIVQERPRATNETPPNHTGTGNNSSSAPATKAQVVGWPPIRSFRKNTLATTSKNT- 229

Query: 236 EVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALG 295
           EVDGKAG  ALFVKVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA G
Sbjct: 230 EVDGKAGPGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPG 289

Query: 296 REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           REMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+
Sbjct: 290 REMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816409|emb|CAN77436.1| hypothetical protein VITISV_007399 [Vitis vinifera]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/338 (73%), Positives = 277/338 (81%), Gaps = 16/338 (4%)

Query: 1   MSPPP-AVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGEE+ G  NV +LAS ASM SVCQ SS +KERNYMGLS+ SS+DSS +S+ S
Sbjct: 1   MSPPLLGVGEEE-GQSNVTILASSASMESVCQISSGLKERNYMGLSECSSVDSSAISTDS 59

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +KSSLNLKATELRLGLPGS SP R  ELCLL   +LDEKPLFPLHP+ D  Y S QK
Sbjct: 60  -DGNKSSLNLKATELRLGLPGSLSPGREPELCLLSSTKLDEKPLFPLHPSKDLTYTSSQK 118

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKE 175
            VVSGNKRGF+DAM+GF EGK+L++SE   +LSPR +PN        +ENLG Q AK KE
Sbjct: 119 TVVSGNKRGFADAMNGFSEGKFLANSEVNVMLSPRPSPN--------KENLGSQPAKMKE 170

Query: 176 MANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNND 235
           MA+ K VQERP   NET  NH G+ +N+SSAPA KAQVVGWPPIRSFRKN+LAT+SKN  
Sbjct: 171 MASPKIVQERPRATNETPPNHTGTGNNNSSAPATKAQVVGWPPIRSFRKNTLATTSKNT- 229

Query: 236 EVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALG 295
           EVDGKAG  ALFVKVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA G
Sbjct: 230 EVDGKAGPGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPG 289

Query: 296 REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           REMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+
Sbjct: 290 REMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458994|ref|XP_002285589.1| PREDICTED: auxin-responsive protein IAA9 [Vitis vinifera] gi|313765825|gb|ADR80320.1| indole-3-acetic acid-induced protein 9 [Vitis vinifera]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/338 (73%), Positives = 277/338 (81%), Gaps = 16/338 (4%)

Query: 1   MSPPP-AVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGEE+ G  NV +LAS ASM SVCQ SS +KERNYMGLS+ SS+DSS +S+ S
Sbjct: 1   MSPPLLGVGEEE-GQSNVTILASSASMESVCQISSGLKERNYMGLSECSSVDSSAISTDS 59

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +KSSLNLKATELRLGLPGS SP R  ELCLL   +LDEKPLFPLHP+ D  Y S QK
Sbjct: 60  -DGNKSSLNLKATELRLGLPGSLSPGREPELCLLSSTKLDEKPLFPLHPSKDLTYTSSQK 118

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKE 175
            VVSGNKRGF+DAM+GF EGK+L++SE   +LSPR +PN        +ENLG Q AK KE
Sbjct: 119 TVVSGNKRGFADAMNGFSEGKFLANSEVNVMLSPRPSPN--------KENLGSQPAKMKE 170

Query: 176 MANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNND 235
           MA+ K VQERP   NET  NH G+ +N+SSAPA KAQVVGWPPIRSFRKN+LAT+SKN  
Sbjct: 171 MASPKIVQERPRATNETPPNHTGTGNNNSSAPATKAQVVGWPPIRSFRKNTLATTSKNT- 229

Query: 236 EVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALG 295
           EVDGKAG  ALFVKVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA G
Sbjct: 230 EVDGKAGPGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPG 289

Query: 296 REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           REMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+
Sbjct: 290 REMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29465672|gb|AAL92850.1| Aux/IAA protein [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/338 (73%), Positives = 276/338 (81%), Gaps = 16/338 (4%)

Query: 1   MSPPP-AVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGEE+ G  NV +LAS ASM SVCQ SS +KERNYMGLS+ SS+DSS +S+ S
Sbjct: 1   MSPPLLGVGEEE-GQSNVTILASSASMESVCQISSGLKERNYMGLSECSSVDSSAISTDS 59

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +KSSLNLKATELRLGLPG  SP R  ELCLL   +LDEKPLFPLHP+ D  Y S QK
Sbjct: 60  -DGNKSSLNLKATELRLGLPGFLSPGREPELCLLSSTKLDEKPLFPLHPSKDLTYTSSQK 118

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKE 175
            VVSGNKRGF+DAM+GF EGK+L++SE   +LSPR +PN        +ENLG Q AK KE
Sbjct: 119 TVVSGNKRGFADAMNGFSEGKFLANSEVNVMLSPRPSPN--------KENLGSQPAKMKE 170

Query: 176 MANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNND 235
           MA+ K VQERP   NET  NH G+ +N+SSAPA KAQVVGWPPIRSFRKN+LAT+SKN  
Sbjct: 171 MASPKIVQERPRATNETPPNHTGTGNNNSSAPATKAQVVGWPPIRSFRKNTLATTSKNT- 229

Query: 236 EVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALG 295
           EVDGKAG  ALFVKVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA G
Sbjct: 230 EVDGKAGPGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPG 289

Query: 296 REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           REMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+
Sbjct: 290 REMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398575|gb|ADL36582.1| ARF domain class transcription factor [Malus x domestica]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/336 (73%), Positives = 272/336 (80%), Gaps = 8/336 (2%)

Query: 1   MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSG 60
           MSPP    +E+ G  +V LLAS  SM SVCQ S  +KERNYMGLSD SS+DSS VS+VS 
Sbjct: 1   MSPPLLGVDEEEGQSDVTLLASSGSMESVCQNSLELKERNYMGLSDCSSVDSSKVSAVS- 59

Query: 61  ESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QKN 119
           + S+SSL+LKATELRLGLPGSQSPER SE  ++   QLDEKPLFPLHP  D HY S QK 
Sbjct: 60  DGSRSSLHLKATELRLGLPGSQSPERDSEARVIS-TQLDEKPLFPLHPLKDGHYSSLQKT 118

Query: 120 VVSGNKRGFSDAMDGFLEGKYLSSSE--LLSPRAAPNLGLKSGSIQENLGPQTAKGKEMA 177
           VVSGNKRGFSDAMD F EGKY +S    LLSPR +PN GLKSGS  EN G Q  K KE+A
Sbjct: 119 VVSGNKRGFSDAMDEFSEGKYANSEVNLLLSPRPSPNFGLKSGSALENPGTQPPKTKEVA 178

Query: 178 NQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEV 237
             K VQERPH  NE+  NHN   +++S APA+KAQVVGWPPIRSFRKNSLAT+SKN +EV
Sbjct: 179 PAKVVQERPHAVNESRPNHN--ENSTSGAPASKAQVVGWPPIRSFRKNSLATTSKNTEEV 236

Query: 238 DGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGRE 297
           DGK+G  ALFVKVS+DGAPYLRKVDLKNYS YQELSSALEKMF CFTIGQYGSHGA GRE
Sbjct: 237 DGKSGPGALFVKVSLDGAPYLRKVDLKNYSAYQELSSALEKMFRCFTIGQYGSHGAPGRE 296

Query: 298 MLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
            +SESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPW+
Sbjct: 297 -ISESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWD 331

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326556|gb|AFZ78618.1| hypothetical protein [Populus tomentosa]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/336 (74%), Positives = 273/336 (81%), Gaps = 6/336 (1%)

Query: 1   MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSG 60
           MSPP     E+ G  NV LLASPAS  S C     +KERNYMGLSD SS+DSS VS+ S 
Sbjct: 1   MSPPLLGVVEEEGHSNVTLLASPASAESACLNGLELKERNYMGLSDCSSVDSSAVSAASD 60

Query: 61  ESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNV 120
           E  K+SLNLKATELRLGLPGSQSPER  EL LL  A LDEKP FPLHP++D HY +QKNV
Sbjct: 61  ER-KTSLNLKATELRLGLPGSQSPERNHELSLLSSALLDEKPFFPLHPSNDGHYSTQKNV 119

Query: 121 VSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKEMA 177
           VSGNKR FSDAMD F E K+LS+SE   +LSPR +PN+GLK G + ENLG Q AK KE+ 
Sbjct: 120 VSGNKRVFSDAMDEFSESKFLSNSEVNAMLSPRPSPNMGLKPGML-ENLGVQQAKVKEIV 178

Query: 178 NQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEV 237
             KA QERPHV NET    N SA+NSS APA KAQVVGWPPI+SFRKNSLAT+SKN +EV
Sbjct: 179 TPKAGQERPHVANETRPLRNSSANNSS-APAPKAQVVGWPPIKSFRKNSLATTSKNTEEV 237

Query: 238 DGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGRE 297
           DGKAG  ALF+KVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA GRE
Sbjct: 238 DGKAGPGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPGRE 297

Query: 298 MLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           MLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPWE
Sbjct: 298 MLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWE 333

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20269051|emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/336 (74%), Positives = 272/336 (80%), Gaps = 6/336 (1%)

Query: 1   MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSG 60
           MSPP     E+ G  NV LLASPAS  S C     +KERNYMGLSD SS+DSS VS+ S 
Sbjct: 1   MSPPLLGVVEEEGQSNVTLLASPASAESACLNGLELKERNYMGLSDCSSVDSSAVSAASD 60

Query: 61  ESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNV 120
           E  K+SLNLKATELRLGLPGSQSPER  EL LL  A LDEKP FPLHP++D HY +QKNV
Sbjct: 61  ER-KASLNLKATELRLGLPGSQSPERNHELSLLSSALLDEKPFFPLHPSNDGHYSTQKNV 119

Query: 121 VSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKEMA 177
           VSGNKR FSDAMD F E K+LS+SE   +LSPR +PN+GLK G + ENLG Q AK KE+ 
Sbjct: 120 VSGNKRVFSDAMDEFSESKFLSNSEVNAMLSPRPSPNMGLKPGML-ENLGVQQAKVKEIV 178

Query: 178 NQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEV 237
             KA QERPH  NET    N SA+NSS APA KAQVVGWPPI+SFRKNSLAT+SKN +EV
Sbjct: 179 APKAGQERPHAANETRPLRNSSANNSS-APAPKAQVVGWPPIKSFRKNSLATTSKNTEEV 237

Query: 238 DGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGRE 297
           DGKAG  ALF+KVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA GRE
Sbjct: 238 DGKAGPGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPGRE 297

Query: 298 MLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           MLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPWE
Sbjct: 298 MLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWE 333

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537856|ref|XP_002509993.1| Auxin-responsive protein IAA19, putative [Ricinus communis] gi|223550694|gb|EEF52180.1| Auxin-responsive protein IAA19, putative [Ricinus communis]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/331 (71%), Positives = 266/331 (80%), Gaps = 4/331 (1%)

Query: 4   PPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSGESS 63
           PP +G  + G  NV +LAS  S  S+CQ  S +KERNYMGLSD SS+DSS+  S S ES 
Sbjct: 3   PPLIGVVEEGQSNVTVLASSTSAESICQNGSKLKERNYMGLSDCSSVDSSIAPSSSDES- 61

Query: 64  KSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QKNVVS 122
           K+ LNLKATELRLGLPGSQSP+R SEL LL   Q DEKP FPL+P++D HY S QKNVVS
Sbjct: 62  KTRLNLKATELRLGLPGSQSPQRNSELSLLNSTQFDEKPFFPLNPSNDGHYSSTQKNVVS 121

Query: 123 GNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAV 182
           GNKRGFSDAMDGF EGK L  + +LSPR +PNLGLK GS  EN GP+ AK K++   K  
Sbjct: 122 GNKRGFSDAMDGFSEGK-LEVNVMLSPRPSPNLGLKPGSALENFGPEAAKVKDVVTPKGA 180

Query: 183 QERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAG 242
            ER H  N+  +NHN SA+N+++  A KAQVVGWPP+R FRKNSLAT+SK  +EVDGKAG
Sbjct: 181 LERHHGTNDARSNHNASANNNNTL-ATKAQVVGWPPVRLFRKNSLATASKKTEEVDGKAG 239

Query: 243 SSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSES 302
             ALFVKVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYG+HG LGREMLSES
Sbjct: 240 PGALFVKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGAHGPLGREMLSES 299

Query: 303 KLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           KLKDLLHGSE+VLTYEDKDGDWMLVGDVPWE
Sbjct: 300 KLKDLLHGSEYVLTYEDKDGDWMLVGDVPWE 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067092|ref|XP_002302351.1| predicted protein [Populus trichocarpa] gi|118486701|gb|ABK95187.1| unknown [Populus trichocarpa] gi|222844077|gb|EEE81624.1| predicted protein [Populus trichocarpa]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/337 (74%), Positives = 272/337 (80%), Gaps = 7/337 (2%)

Query: 1   MSPPPAVGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVSG 60
           MSPP     E+ G  NV LLASPAS  S C     +KERNYMGLSD SS+DSS VS+ S 
Sbjct: 1   MSPPLLGVVEEEGHSNVTLLASPASAESACLNGLELKERNYMGLSDCSSVDSSAVSAASD 60

Query: 61  ESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QKN 119
           E  K+SLNLKATELRLGLPGSQSPER  EL LL  A LDEKP FPLHP++D HY S QKN
Sbjct: 61  ER-KTSLNLKATELRLGLPGSQSPERNHELSLLSSALLDEKPFFPLHPSNDGHYSSTQKN 119

Query: 120 VVSGNKRGFSDAMDGFLEGKYLSSSE---LLSPRAAPNLGLKSGSIQENLGPQTAKGKEM 176
           VVSGNKR FSDAMD F E K+LS+SE   +LSPR +PN+GLK G + ENLG Q AK KE+
Sbjct: 120 VVSGNKRVFSDAMDEFSESKFLSNSEVNAMLSPRPSPNMGLKPGML-ENLGVQQAKVKEI 178

Query: 177 ANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDE 236
              KA QERPH  NET    N SA+NSS APA KAQVVGWPPI+SFRKNSLAT+SKN +E
Sbjct: 179 VAPKAGQERPHAANETRPLRNSSANNSS-APAPKAQVVGWPPIKSFRKNSLATTSKNTEE 237

Query: 237 VDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGR 296
           VDGKAG  ALF+KVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYGSHGA GR
Sbjct: 238 VDGKAGPGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGSHGAPGR 297

Query: 297 EMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           EMLSESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPWE
Sbjct: 298 EMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWE 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461351|ref|XP_004148405.1| PREDICTED: auxin-responsive protein IAA9-like [Cucumis sativus] gi|6136832|dbj|BAA85821.1| Aux/IAA protein [Cucumis sativus]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/335 (68%), Positives = 264/335 (78%), Gaps = 14/335 (4%)

Query: 1   MSPPPA-VGEEKRGPGNVNLLASPASMGSVCQKSSVIKERNYMGLSDSSSMDSSVVSSVS 59
           MSPP   VGE +    NV LLAS  SM SV   +   +ERNYMGLSDSSS DS + ++ S
Sbjct: 1   MSPPLLDVGEVEESRSNVTLLASSNSMESVSPNNLEFEERNYMGLSDSSSEDSCMTATKS 60

Query: 60  GESSKSSLNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPS-QK 118
            + +K SLNLKATELRLGLPGS+SPER  + CL   +QLDEKPLFPLHP+SD  Y S QK
Sbjct: 61  -DGNKPSLNLKATELRLGLPGSESPERDPDNCLRSSSQLDEKPLFPLHPSSDGLYSSPQK 119

Query: 119 NVVSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMAN 178
            VVSGNKRGFSDAM+ F E KY +           N+GLK+GS+ ENLG Q  K KE   
Sbjct: 120 TVVSGNKRGFSDAMNEFSEEKYHA-----------NIGLKAGSLLENLGSQMGKVKEPTT 168

Query: 179 QKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVD 238
           QKAVQERP  N+E+  +HN +A+N++S P +KAQVVGWPPIRSFRKN+LAT+SKNNDEVD
Sbjct: 169 QKAVQERPQENSESRPSHNETANNNTSTPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVD 228

Query: 239 GKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREM 298
           GKA + ALF+KVSMDGAPYLRKVDL+NYS YQELSSALEKMFSCFTIGQYG+HGALG E 
Sbjct: 229 GKAMAGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGAHGALGMEK 288

Query: 299 LSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           +SESKLKDLLHGSE+VLTYEDKDGDWMLVGDVPWE
Sbjct: 289 MSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWE 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.477	0.470	0.608	2.9e-76
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.579	0.632	0.513	4.8e-54
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.357	0.521	0.598	1.7e-44
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.519	0.650	0.497	4.1e-43
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.360	0.493	0.595	4.9e-43
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.324	0.420	0.612	2.1e-42
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.360	0.508	0.598	2.5e-41
UNIPROTKB|Q6AT33	281	IAA19 "Auxin-responsive protei	0.579	0.686	0.449	3.2e-41
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.321	0.406	0.588	1.1e-38
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.345	0.502	0.545	7.2e-36

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
 Identities = 101/166 (60%), Positives = 127/166 (76%)

Query:   168 PQTAKGKEMANQKAVQERPHVNNETITNHNGXXXXXXXXXXXXXQVVGWPPIRSFRKNSL 227
             P+ A  + +  +   Q  P   + T TN++              Q+VGWPP+RS+RKN+L
Sbjct:   146 PEAAATQSVTKKDVPQNIPKGQSST-TNNSSSPPAAKA------QIVGWPPVRSYRKNTL 198

Query:   228 ATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQ 287
             AT+ KN+DEVDG+ GS ALFVKVSMDGAPYLRKVDL++Y+ Y ELSSALEKMF+ FT+GQ
Sbjct:   199 ATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQ 258

Query:   288 YGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
              GS+GA G++MLSE+KLKDLL+G ++VLTYEDKDGDWMLVGDVPWE
Sbjct:   259 CGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWE 304

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
 Identities = 114/222 (51%), Positives = 140/222 (63%)

Query:   121 VSGNKRGFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQK 180
             VSG KR FSDA++     K++ S    S  A  ++G  SGS     GP+T+  K+   + 
Sbjct:    72 VSGAKRVFSDAIND--SNKWVFSPG--STTATGDVG--SGS-----GPRTSVVKD--GKS 118

Query:   181 AVQERPHVNNETITNHNGXXXXXXXXXXXXXQVVGWPPIRSFRKNSLATSSK----NN-- 234
                 +P V  +                    QVVGWPPIRSFRKNS+A+S      NN  
Sbjct:   119 TTFTKPAVPVKE-------KKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSE 171

Query:   235 -DEVDGKAGSS--ALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSH 291
              +E + K+G     L+VKVSM+GAPYLRK+DLK Y  Y ELSSALEKMFSCFTIGQ+GSH
Sbjct:   172 TEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSH 231

Query:   292 GALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 333
             G  GR+ L+ES+L DLL GSE+V+TYEDKD DWMLVGDVPWE
Sbjct:   232 GGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-44, Sum P(3) = 1.7e-44
 Identities = 73/122 (59%), Positives = 92/122 (75%)

Query:   212 QVVGWPPIRSFRKNSLATSSKNN-DEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQ 270
             QVVGWPP+R++RKN +A       +E     G +  FVKVSMDGAPYLRKVDLK Y+ Y+
Sbjct:    76 QVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYK 135

Query:   271 ELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDV 330
             +LS AL KMFS FT+G YG+ G +  + ++ESK+ DLL+ SE+V +YEDKDGDWMLVGDV
Sbjct:   136 DLSDALAKMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDV 193

Query:   331 PW 332
             PW
Sbjct:   194 PW 195

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 414 (150.8 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 92/185 (49%), Positives = 109/185 (58%)

Query:   153 PNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGXXXXXXXXXXXXXQ 212
             P  G K G     +G    + +E A  KA         E                    Q
Sbjct:    56 PKGGAKRGFADAIVGGPAGQRREAAGGKAAAAAAEAEEEE-------EKKKAQAPAAKAQ 108

Query:   213 VVGWPPIRSFRKNSLATSS---KNNDEVDGKAG--SSALFVKVSMDGAPYLRKVDLKNYS 267
             VVGWPPIRS+RKN++A S    K  D+ + K    S  L+VKVSMDGAPYLRKVDLK Y 
Sbjct:   109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYK 168

Query:   268 KYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV 327
              Y+ELS ALEKMFSCFT+G   S+G  GR+ LS+ +L DL +G+E VLTYEDKD DWMLV
Sbjct:   169 NYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLV 228

Query:   328 GDVPW 332
             GDVPW
Sbjct:   229 GDVPW 233

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 4.9e-43, Sum P(3) = 4.9e-43
 Identities = 78/131 (59%), Positives = 95/131 (72%)

Query:   212 QVVGWPPIRSFRKNSLA---TSSKNNDEVDGKAGS------SALFVKVSMDGAPYLRKVD 262
             QVVGWPP+R++RKN +    TSS   +    KAG+       A  VKVSMDGAPYLRKVD
Sbjct:    82 QVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVD 141

Query:   263 LKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDG 322
             LK Y  YQ+LS AL KMFS FT+G YG+ G +  + ++ESKL +LL+ SE+V +YEDKDG
Sbjct:   142 LKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DFMNESKLMNLLNSSEYVPSYEDKDG 199

Query:   323 DWMLVGDVPWE 333
             DWMLVGDVPWE
Sbjct:   200 DWMLVGDVPWE 210

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 361 (132.1 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
 Identities = 76/124 (61%), Positives = 91/124 (73%)

Query:   212 QVVGWPPIRSFRKNSLATSS--KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKY 269
             QVVGWPPIRS+RKN++AT+    + ++ + K G   L+VKVSMDGAPYLRKVDLK Y  Y
Sbjct:   116 QVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNY 175

Query:   270 QELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGD 329
             ++LS+ALEKMF  FT G+ G         LSES+ KD     E+VLTYEDKDGDWMLVGD
Sbjct:   176 KDLSTALEKMFIGFTTGKDG---------LSESR-KD----GEYVLTYEDKDGDWMLVGD 221

Query:   330 VPWE 333
             VPWE
Sbjct:   222 VPWE 225

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
 Identities = 82/137 (59%), Positives = 101/137 (73%)

Query:   212 QVVGWPPIRSFRKNSLA-------TSSKNNDEVDGKAG--SSA------LFVKVSMDGAP 256
             QVVGWPP+RSFRKN ++        +++ ND+  G +G  SSA       +VKVSMDGAP
Sbjct:    70 QVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAP 129

Query:   257 YLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLT 316
             YLRK+DLK Y  YQ+LS+AL KMFS FTIG YG  G   ++ ++ESKL DLL+GS++V T
Sbjct:   130 YLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPT 187

Query:   317 YEDKDGDWMLVGDVPWE 333
             YEDKDGDWMLVGDVPWE
Sbjct:   188 YEDKDGDWMLVGDVPWE 204

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q6AT33 IAA19 "Auxin-responsive protein IAA19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 407 (148.3 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 89/198 (44%), Positives = 113/198 (57%)

Query:   137 EGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNH 196
             E   + ++  L P   P  G K G + ++L    ++G+  A      ER  V  E     
Sbjct:    56 EAVVVDAALTLGPAPPPRGGAKRGFV-DSL--DRSEGRRAAATAGDDERG-VREEEEEEK 111

Query:   197 NGXXXXXXXXXXXXXQVVGWPPIRSFRKNSLATSS-KNNDEVDGKAGSSALFVKVSMDGA 255
                            QVVGWPP+RS+RKN+LA S+ K   E  GK+     +VKVSMDGA
Sbjct:   112 GLGEAAAGAPRAAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGA 171

Query:   256 PYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVL 315
             PYLRKVDLK YS Y++LS ALEKMFSCF  G+  SH    R+ L++    D L   E+VL
Sbjct:   172 PYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVL 231

Query:   316 TYEDKDGDWMLVGDVPWE 333
             TYEDKD DWMLVGD+PW+
Sbjct:   232 TYEDKDADWMLVGDLPWD 249

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 349 (127.9 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 73/124 (58%), Positives = 89/124 (71%)

Query:   212 QVVGWPPIRSFRKNSLATSS--KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKY 269
             QVVGWPPIRS+RKN++AT+    N ++VD K G   L+VKVSMDGAPYLRKVDLK Y  Y
Sbjct:   123 QVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNY 182

Query:   270 QELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGD 329
             +++S  LEKMF  F+ G+ G+          E++ KD     E+VLTYEDKDGDWMLVGD
Sbjct:   183 KDMSLGLEKMFIGFSTGKEGA----------ENQ-KD----GEYVLTYEDKDGDWMLVGD 227

Query:   330 VPWE 333
             VPWE
Sbjct:   228 VPWE 231

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 66/121 (54%), Positives = 89/121 (73%)

Query:   212 QVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQE 271
             QVVGWPP+RS+RKN + +  K++   +     +A FVKVSMDGAPYLRK+DL+ Y  Y E
Sbjct:    82 QVVGWPPVRSYRKNVMVSCQKSSGGPE-----AAAFVKVSMDGAPYLRKIDLRMYKSYDE 136

Query:   272 LSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVP 331
             LS+AL  MFS FT+G++G    +  + ++E KL DL++  ++V +YEDKDGDWMLVGDVP
Sbjct:   137 LSNALSNMFSSFTMGKHGGEEGM-IDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVP 195

Query:   332 W 332
             W
Sbjct:   196 W 196

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38826	IAA8_ARATH	No assigned EC number	0.6098	0.8048	0.8348	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	4e-69

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  213 bits (545), Expect = 4e-69
 Identities = 108/267 (40%), Positives = 120/267 (44%), Gaps = 103/267 (38%)

Query: 67  LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKR 126
           LNLKATELRLGLPG   PE                                 + V+ NKR
Sbjct: 1   LNLKATELRLGLPGGSEPE----------------------------SEPSTSSVTSNKR 32

Query: 127 GFSDAMDGFLEGKYLSSSELLSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERP 186
           GFS+                                                        
Sbjct: 33  GFSE------------------------------------------------VTEDGISS 44

Query: 187 HVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSAL 246
            +  +  T    S  +S+  PA KAQVVGWPP+RS+RKNSL                S  
Sbjct: 45  SLGEDKSTISVSSNGDSAKPPA-KAQVVGWPPVRSYRKNSLR------------EKKSGS 91

Query: 247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKD 306
           +VKVSMDGAPYLRKVDLK Y  Y ELSSALEKMFSCFTIG              ES L D
Sbjct: 92  YVKVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIG--------------ESGLLD 137

Query: 307 LLHGSEFVLTYEDKDGDWMLVGDVPWE 333
           LL+GSE+V TYEDKDGDWMLVGDVPWE
Sbjct: 138 LLNGSEYVPTYEDKDGDWMLVGDVPWE 164

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.01
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	96.8
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	96.61
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	96.41
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.3
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	95.88
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.05
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	94.93
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.91
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	94.77
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	94.07
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	93.47
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	88.8

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=2.4e-57  Score=409.46  Aligned_cols=191  Identities=62%  Similarity=0.963  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCccCCccccccCCCccCCCCCCCCCCCCCCCCCCCcccccCCCcchhhhhcccccCcccccccc
Q 019963           67 LNLKATELRLGLPGSQSPERGSELCLLGPAQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSEL  146 (333)
Q Consensus        67 lnlk~TELRLGLPGs~sper~~~~~~~~~~~~~~~~~fpl~p~~~~~~~~~~~~~sG~KRGFsdai~~~~egk~~~~~~~  146 (333)
                      ||||+|||||||||+++|+....                         ..++...+++||||+++|+........     
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~~-------------------------~~~~~~~~~~kR~F~~aid~~~~~~~~-----   50 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASSS-------------------------SSSKKSSSGNKRGFSEAIDSSSSNSQS-----   50 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcccc-------------------------cccccccCcccccchhhhhhccccccc-----
Confidence            79999999999999999882210                         123456789999999999865411010     


Q ss_pred             cCCCCCCCCCCCccccccccCCCcccccccccccccccCCCCCcccccCCCCCCCCCCCCCcccCCcccCCCcccccccc
Q 019963          147 LSPRAAPNLGLKSGSIQENLGPQTAKGKEMANQKAVQERPHVNNETITNHNGSASNSSSAPAAKAQVVGWPPIRSFRKNS  226 (333)
Q Consensus       147 ~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~~~~n~~~~~~~~~~~p~akaqVVGWPPIrS~RKN~  226 (333)
                      ......                  .. ..     ...+....       ..........+|++++|+|||||||+||||.
T Consensus        51 ~~~~~~------------------~~-~~-----~~~~~~~~-------~~~~~~~~~~~p~~~~~~vgwpp~~s~r~n~   99 (215)
T PF02309_consen   51 SSSSSS------------------DS-SS-----SSSSSSTS-------SSSSDSSSSSPPASKAQVVGWPPVRSFRKNS   99 (215)
T ss_dssp             ------------------------------------------------------------------BTTBS----S----
T ss_pred             cccccc------------------cc-Cc-----cccccccc-------ccccccccCCCCcccccccCCCccccccccc
Confidence            000000                  00 00     00000000       0000112234577889999999999999998


Q ss_pred             cccccCCCccccCcCCCCcceeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhcc
Q 019963          227 LATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKD  306 (333)
Q Consensus       227 ~~~~sk~~~e~~~k~~~~~~fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~d  306 (333)
                      +...         +....++||||+|||+||||||||++|++|++|+.+|++||.+|.|++|++++      +++..+.+
T Consensus       100 ~~~~---------~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~------~~~~~~~~  164 (215)
T PF02309_consen  100 LSEK---------QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHG------LNESGLLD  164 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc---------ccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccc------ccchhhcc
Confidence            7621         11224789999999999999999999999999999999999999999998743      45566778


Q ss_pred             CCCCCCeEEEEEeCCCCeeecccCCCC
Q 019963          307 LLHGSEFVLTYEDKDGDWMLVGDVPWE  333 (333)
Q Consensus       307 ll~gseyvLtYEDkEGDwMLVGDVPWe  333 (333)
                      ++++++|+|||||+||||||||||||+
T Consensus       165 ~~~~~~~~l~Y~D~egd~mlvGD~PW~  191 (215)
T PF02309_consen  165 LLNGSEYVLVYEDKEGDWMLVGDVPWE  191 (215)
T ss_dssp             ---------------------------
T ss_pred             ccCCcceeEEEECCCCCEEEecCCCHH
Confidence            888899999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.01  E-value=0.0022  Score=49.11  Aligned_cols=56  Identities=29%  Similarity=0.530  Sum_probs=46.1

Q ss_pred             eeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeee
Q 019963          247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML  326 (333)
Q Consensus       247 fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwML  326 (333)
                      -|||+..|. +=|.+.+..--+|.+|...+++.|...                          ...+.|.|.|.||||..
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~Y~D~dgD~V~   55 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------------------DEDFQLKYKDEDGDLVT   55 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------------------TSSEEEEEEETTSSEEE
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------------------CccEEEEeeCCCCCEEE
Confidence            489999997 444588888889999999999999740                          24889999999999998


Q ss_pred             ccc
Q 019963          327 VGD  329 (333)
Q Consensus       327 VGD  329 (333)
                      +-+
T Consensus        56 i~s   58 (84)
T PF00564_consen   56 ISS   58 (84)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=96.80  E-value=0.0044  Score=50.81  Aligned_cols=57  Identities=26%  Similarity=0.330  Sum_probs=45.0

Q ss_pred             eeEEeecCCccceeeeCC---CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCC
Q 019963          247 FVKVSMDGAPYLRKVDLK---NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD  323 (333)
Q Consensus       247 fVKV~MDG~PiGRKVDL~---~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGD  323 (333)
                      -|||.-+|.-+=-++++.   ..-+|++|...+.+.|..                         ....+|+|.|.|.|||
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l-------------------------~~~~~~~l~Y~Dedgd   56 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL-------------------------SPDADLSLTYTDEDGD   56 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCC
Confidence            489999998555555554   467999999999999964                         0125899999999999


Q ss_pred             eeecc
Q 019963          324 WMLVG  328 (333)
Q Consensus       324 wMLVG  328 (333)
                      |+.+-
T Consensus        57 ~V~l~   61 (91)
T cd06398          57 VVTLV   61 (91)
T ss_pred             EEEEc
Confidence            98764

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=96.61  E-value=0.0076  Score=48.44  Aligned_cols=54  Identities=28%  Similarity=0.431  Sum_probs=43.4

Q ss_pred             eeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeee
Q 019963          247 FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWML  326 (333)
Q Consensus       247 fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwML  326 (333)
                      =|||...|.  -+.+-|..--+|++|...+.++|..              +           +...|.|-|.|.||||.+
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~--------------~-----------~~~~f~LkY~Ddegd~v~   54 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL--------------D-----------DMSAFDLKYLDDDEEWVL   54 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC--------------C-----------CCCeeEEEEECCCCCeEE
Confidence            389999887  4556666666999999999999974              0           125899999999999987


Q ss_pred             c
Q 019963          327 V  327 (333)
Q Consensus       327 V  327 (333)
                      +
T Consensus        55 l   55 (82)
T cd06407          55 L   55 (82)
T ss_pred             e
Confidence            6

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=96.41  E-value=0.014  Score=44.72  Aligned_cols=54  Identities=28%  Similarity=0.528  Sum_probs=43.7

Q ss_pred             eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963          248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV  327 (333)
Q Consensus       248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  327 (333)
                      |||.-.|  --|.+-+..--+|.+|...+.+.|..                          ....+.|.|+|.||||+.+
T Consensus         4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~--------------------------~~~~~~l~Y~Dedgd~v~l   55 (81)
T smart00666        4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGL--------------------------DNQSFTLKYQDEDGDLVSL   55 (81)
T ss_pred             EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCC--------------------------CCCCeEEEEECCCCCEEEe
Confidence            7887755  36777888889999999999999974                          0147899999999999876


Q ss_pred             cc
Q 019963          328 GD  329 (333)
Q Consensus       328 GD  329 (333)
                      .+
T Consensus        56 ~s   57 (81)
T smart00666       56 TS   57 (81)
T ss_pred             cC
Confidence            53

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.30  E-value=0.012  Score=47.74  Aligned_cols=52  Identities=15%  Similarity=0.295  Sum_probs=45.6

Q ss_pred             eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963          248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV  327 (333)
Q Consensus       248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  327 (333)
                      |||.-.|.-+--+++-+..-+|.+|...+.++|..                          +  .|.|.|-|.||||+++
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l--------------------------~--~f~lKYlDde~e~v~l   54 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL--------------------------N--DIQIKYVDEENEEVSV   54 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC--------------------------C--cceeEEEcCCCCEEEE
Confidence            89999998777788887788999999999999974                          1  6799999999999986

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=95.88  E-value=0.041  Score=41.82  Aligned_cols=55  Identities=27%  Similarity=0.477  Sum_probs=42.8

Q ss_pred             eeEEeecCCccceeeeCC-CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCee
Q 019963          247 FVKVSMDGAPYLRKVDLK-NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM  325 (333)
Q Consensus       247 fVKV~MDG~PiGRKVDL~-~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwM  325 (333)
                      -|||+-.|.  -|.+=+. ..-+|.+|...|.+.|...                          ...+.+.|.|.||||.
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~y~D~e~d~v   53 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD--------------------------AVSFKLKYPDEDGDLV   53 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC--------------------------CCcEEEEeeCCCCCEE
Confidence            378888765  3444444 8889999999999999741                          0378999999999998


Q ss_pred             eccc
Q 019963          326 LVGD  329 (333)
Q Consensus       326 LVGD  329 (333)
                      .+.+
T Consensus        54 ~l~s   57 (81)
T cd05992          54 TISS   57 (81)
T ss_pred             EeCC
Confidence            8764

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.05  E-value=0.095  Score=43.07  Aligned_cols=57  Identities=28%  Similarity=0.493  Sum_probs=42.2

Q ss_pred             ceeEEeecC---Cccceee--eCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeC
Q 019963          246 LFVKVSMDG---APYLRKV--DLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDK  320 (333)
Q Consensus       246 ~fVKV~MDG---~PiGRKV--DL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDk  320 (333)
                      +.||.+..|   .+==|++  |=....+|++|...+.+||..                         +.+..|+|.|.|.
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-------------------------l~~~~ftlky~De   55 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-------------------------LRGKNFQLFWKDE   55 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-------------------------cCCCcEEEEEECC
Confidence            368888877   2333444  446667999999999999963                         1235899999999


Q ss_pred             CCCeeec
Q 019963          321 DGDWMLV  327 (333)
Q Consensus       321 EGDwMLV  327 (333)
                      |||..-+
T Consensus        56 eGDlvtI   62 (87)
T cd06402          56 EGDLVAF   62 (87)
T ss_pred             CCCEEee
Confidence            9998654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.93  E-value=0.068  Score=43.65  Aligned_cols=54  Identities=22%  Similarity=0.396  Sum_probs=40.5

Q ss_pred             eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963          248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV  327 (333)
Q Consensus       248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  327 (333)
                      ||...|..=-=-.+|.....+|+++..-|++||..                          .+..|+|-|.|.+||.+-+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l--------------------------~~~~f~i~Y~D~~gDLLPI   56 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI--------------------------PNVDFLIGYTDPHGDLLPI   56 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC--------------------------CCCcEEEEEeCCCCCEecc
Confidence            56666665222245566679999999999999974                          1248999999999998754

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.91  E-value=0.057  Score=44.29  Aligned_cols=50  Identities=22%  Similarity=0.424  Sum_probs=37.2

Q ss_pred             CccceeeeC--CCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963          255 APYLRKVDL--KNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV  327 (333)
Q Consensus       255 ~PiGRKVDL--~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  327 (333)
                      .|-||-+=+  ....||.+|..++.+=|+.              +        +. ....|.|.|.|.||||+|.
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~--------------d--------~~-~~~~~~L~YlDDEgD~Vll   58 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGD--------------D--------DF-ETHLYALSYVDDEGDIVLI   58 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCC--------------c--------cc-cCCcccEEEEcCCCCEEEE
Confidence            456665544  4478999999999999864              1        00 0258999999999999986

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.77  E-value=0.083  Score=43.36  Aligned_cols=53  Identities=23%  Similarity=0.384  Sum_probs=42.5

Q ss_pred             eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963          248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV  327 (333)
Q Consensus       248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  327 (333)
                      ||++-.|.-+--.+|.  .-+|++|...+..||+.                         ..+..|++.|.|.|||-.-+
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-------------------------~~~q~ft~kw~DEEGDp~ti   55 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-------------------------HNDQPFTLKWIDEEGDPCTI   55 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCCceee
Confidence            7899999866556666  77899999999999974                         12358999999999996543

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=94.07  E-value=0.23  Score=40.58  Aligned_cols=58  Identities=24%  Similarity=0.539  Sum_probs=40.9

Q ss_pred             eeEEeecCCccceeeeCCCCC-ChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCee
Q 019963          247 FVKVSMDGAPYLRKVDLKNYS-KYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM  325 (333)
Q Consensus       247 fVKV~MDG~PiGRKVDL~~y~-sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwM  325 (333)
                      -+|+.-.|. | |++=+..-. +|.+|...+.+.|...    .+                   ....+++.|.|.|||+.
T Consensus         2 iiK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~----~~-------------------~~~~flIKYkD~dGDlV   56 (81)
T cd06401           2 ILKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGK----LG-------------------SSDDVLIKYKDEDGDLI   56 (81)
T ss_pred             eEEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccc----cC-------------------CcccEEEEEECCCCCEE
Confidence            367777665 3 555554433 9999999999999741    10                   12488999999999997


Q ss_pred             eccc
Q 019963          326 LVGD  329 (333)
Q Consensus       326 LVGD  329 (333)
                      =|-+
T Consensus        57 TIts   60 (81)
T cd06401          57 TIFD   60 (81)
T ss_pred             Eecc
Confidence            6543

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=93.47  E-value=0.22  Score=40.85  Aligned_cols=52  Identities=25%  Similarity=0.383  Sum_probs=42.2

Q ss_pred             eEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963          248 VKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV  327 (333)
Q Consensus       248 VKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  327 (333)
                      -||.-.|.  .|++-...-=+|..|++.|+.+|....                         . .+.|||.|.|||..=+
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~-------------------------~-~~~vtYiDeD~D~ITl   54 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE-------------------------I-KVGVTYIDNDNDEITL   54 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh-------------------------h-HeEEEEEcCCCCEEEe
Confidence            37877885  788888888899999999999998511                         1 3799999999998644

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=88.80  E-value=1.5  Score=36.12  Aligned_cols=54  Identities=19%  Similarity=0.377  Sum_probs=44.2

Q ss_pred             ceeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCee
Q 019963          246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM  325 (333)
Q Consensus       246 ~fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwM  325 (333)
                      .-|||+-.|.  .|-|-+..--+|++|...+.++|..                           ...+.|-|.|. ||..
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~---------------------------~~~~~iKykDE-GD~i   52 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF---------------------------KRRLKIKMKDD-GDMI   52 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCceEEEEEcC-CCCc
Confidence            4589998887  6667777777899999999999974                           13789999999 9987


Q ss_pred             eccc
Q 019963          326 LVGD  329 (333)
Q Consensus       326 LVGD  329 (333)
                      -++|
T Consensus        53 ti~s   56 (86)
T cd06408          53 TMGD   56 (86)
T ss_pred             cccC
Confidence            7765

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 50/346 (14%), Positives = 94/346 (27%), Gaps = 118/346 (34%)

Query: 51  DSSVVSSVSGESSK------SSLNLKATELR------LGLPGSQSPERGSELCLLGP--- 95
              V   +S  ++        S+ L   E++      L       P    E+    P   
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRL 330

Query: 96  ----AQLDEKPLFPLHPTSDSHYPSQKNVVSGNKRGFSDAMDGFLEGKYLSSSEL----- 146
                 + +        T D ++   K+V   N    +  ++  L    L  +E      
Sbjct: 331 SIIAESIRDGLA-----TWD-NW---KHV---NCDKLTTIIESSLN--VLEPAEYRKMFD 376

Query: 147 -LS--PRAAPNLGLKSGSIQ---ENLGPQTAKG--KEMANQKAVQERPHVNNETITNHNG 198
            LS  P   P+  + +  +     ++          ++     V+++P     TI+  + 
Sbjct: 377 RLSVFP---PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTISIPSI 431

Query: 199 SASNSSSAPAAKA---QVVG-WPPIRSFRKNSLATSSKNNDEVDG--------------K 240
                       A    +V  +   ++F  + L         +D                
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP-----PYLDQYFYSHIGHHLKNIEH 486

Query: 241 AGSSALF-----------VKVSMDGAPYLRK-------VDLKNYSKY--------QELSS 274
                LF            K+  D   +            LK Y  Y        + L +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 275 ALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDK 320
           A+   F    + +   +       L  SK  DLL      L  ED+
Sbjct: 547 AILD-F----LPKIEEN-------LICSKYTDLLR---IALMAEDE 577

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	95.38
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.2
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	94.62
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	93.44
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	82.95

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=95.38  E-value=0.03  Score=44.86  Aligned_cols=59  Identities=25%  Similarity=0.303  Sum_probs=45.6

Q ss_pred             CCcceeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCC
Q 019963          243 SSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDG  322 (333)
Q Consensus       243 ~~~~fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEG  322 (333)
                      .+..=||..-|+.--=-.+|-....+|++|..-|+++|..                          ....|++.|.|.||
T Consensus         4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L--------------------------~~~~f~i~Y~D~dG   57 (86)
T 1wmh_B            4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHG   57 (86)
T ss_dssp             -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTS
T ss_pred             CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC--------------------------CCCCEEEEEECCCC
Confidence            3457788888887433356666778999999999999963                          12479999999999


Q ss_pred             Ceeec
Q 019963          323 DWMLV  327 (333)
Q Consensus       323 DwMLV  327 (333)
                      |++-+
T Consensus        58 DLlpI   62 (86)
T 1wmh_B           58 DLLPL   62 (86)
T ss_dssp             CEEEC
T ss_pred             CEeee
Confidence            99754

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.20  E-value=0.056  Score=43.28  Aligned_cols=57  Identities=21%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             CcceeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCC
Q 019963          244 SALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD  323 (333)
Q Consensus       244 ~~~fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGD  323 (333)
                      +.+=|||+-.|.-+  .+.+...-+|++|...|..+|..                         ..+..+++.|.|.|||
T Consensus         5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~-------------------------~~~~~f~lky~DEeGD   57 (89)
T 1vd2_A            5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSF-------------------------DNEQLFTMKWIDEEGD   57 (89)
T ss_dssp             SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTC-------------------------CSSCCEEEEECCSSSC
T ss_pred             CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCC-------------------------CCCCeEEEEEECCCCC
Confidence            35678999999744  44445567999999999999974                         1134799999999999


Q ss_pred             eeec
Q 019963          324 WMLV  327 (333)
Q Consensus       324 wMLV  327 (333)
                      +.-+
T Consensus        58 ~iti   61 (89)
T 1vd2_A           58 PCTV   61 (89)
T ss_dssp             CEEC
T ss_pred             cccc
Confidence            8644

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=94.62  E-value=0.045  Score=44.81  Aligned_cols=59  Identities=22%  Similarity=0.315  Sum_probs=42.2

Q ss_pred             cceeEEeecCC----ccceeeeCCC-----------CCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCC
Q 019963          245 ALFVKVSMDGA----PYLRKVDLKN-----------YSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLH  309 (333)
Q Consensus       245 ~~fVKV~MDG~----PiGRKVDL~~-----------y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~  309 (333)
                      ++-||++..|.    .==|++=|..           ..+|++|...+.++|..                         +.
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-------------------------l~   59 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-------------------------LR   59 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------SC
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-------------------------cC
Confidence            46788888752    2335554431           24899999999999963                         12


Q ss_pred             CCCeEEEEEeCCCCeeecc
Q 019963          310 GSEFVLTYEDKDGDWMLVG  328 (333)
Q Consensus       310 gseyvLtYEDkEGDwMLVG  328 (333)
                      +..|.|.|.|.|||+.-+-
T Consensus        60 ~~~f~l~Y~DedGDlItiS   78 (102)
T 2kkc_A           60 PGGFQAHYRAERGDLVAFS   78 (102)
T ss_dssp             SSCEEEEEECTTCCEEEEC
T ss_pred             CCcEEEEEECCCCCEEEec
Confidence            4589999999999987543

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=93.44  E-value=0.12  Score=43.35  Aligned_cols=59  Identities=22%  Similarity=0.327  Sum_probs=42.5

Q ss_pred             CcceeEEeecCC----ccceeeeCC-----------CCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCC
Q 019963          244 SALFVKVSMDGA----PYLRKVDLK-----------NYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLL  308 (333)
Q Consensus       244 ~~~fVKV~MDG~----PiGRKVDL~-----------~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll  308 (333)
                      ..+-||++..|.    .==|++=|.           .-.+|+.|...+.++|..                         +
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-------------------------L   73 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-------------------------L   73 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------S
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc-------------------------c
Confidence            457899998752    123555443           245999999999999963                         1


Q ss_pred             CCCCeEEEEEeCCCCeeec
Q 019963          309 HGSEFVLTYEDKDGDWMLV  327 (333)
Q Consensus       309 ~gseyvLtYEDkEGDwMLV  327 (333)
                      .+..|.|.|.|.|||+.-+
T Consensus        74 ~~~~f~l~YkDEdGDlItI   92 (117)
T 2ktr_A           74 RPGGFQAHYRAERGDLVAF   92 (117)
T ss_dssp             CSSCEEEEEECTTCCEEEE
T ss_pred             CCCcEEEEEECCCCCEEEe
Confidence            2457999999999998754

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=82.95  E-value=2.8  Score=34.18  Aligned_cols=65  Identities=15%  Similarity=0.398  Sum_probs=46.2

Q ss_pred             CcceeEEeecCCc----c--ceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEE
Q 019963          244 SALFVKVSMDGAP----Y--LRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTY  317 (333)
Q Consensus       244 ~~~fVKV~MDG~P----i--GRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtY  317 (333)
                      ++.-|||+-+..-    +  .|.|=+..--+|++|...+.+-|..++      .     +        +.  .....|-|
T Consensus         4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~------~-----~--------~i--~~~~klkY   62 (98)
T 1q1o_A            4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH------N-----N--------NI--SPITKIKY   62 (98)
T ss_dssp             SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC------S-----S--------CC--CCCCCEEE
T ss_pred             ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc------c-----c--------cc--cceeEEEE
Confidence            4567888877421    2  366667788899999999999997521      0     0        00  12468999


Q ss_pred             EeCCCCeeeccc
Q 019963          318 EDKDGDWMLVGD  329 (333)
Q Consensus       318 EDkEGDwMLVGD  329 (333)
                      .|.|||+...++
T Consensus        63 kDEdGD~Vtl~s   74 (98)
T 1q1o_A           63 QDEDGDFVVLGS   74 (98)
T ss_dssp             ECSSSCEEEECS
T ss_pred             EcCCCCEEEEcC
Confidence            999999988776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.63
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.36
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	81.76

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0015  Score=50.42  Aligned_cols=55  Identities=9%  Similarity=0.201  Sum_probs=46.4

Q ss_pred             ceeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCee
Q 019963          246 LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWM  325 (333)
Q Consensus       246 ~fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwM  325 (333)
                      .=|||+..|..+=-+|-+....+|.+|...|.+.|..                            .++.|.|.|.|+||+
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l----------------------------~~~~lkY~Ddd~e~v   56 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV   56 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc----------------------------ccceEEEEcCCCCEE
Confidence            4589999998666677777889999999999999963                            147899999999999


Q ss_pred             ecc
Q 019963          326 LVG  328 (333)
Q Consensus       326 LVG  328 (333)
                      ++.
T Consensus        57 ~l~   59 (85)
T d2bkfa1          57 SIN   59 (85)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            875

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.016  Score=43.48  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=43.5

Q ss_pred             CcceeEEeecCCccceeeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCC
Q 019963          244 SALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGD  323 (333)
Q Consensus       244 ~~~fVKV~MDG~PiGRKVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGD  323 (333)
                      +..-|||+.++.-+-=+|  ..--+|.+|...+.+.|..                            ..++|-|.|.|||
T Consensus        11 ~~ikVKv~~~~D~~~~~l--~~~it~~dL~~kI~~rf~~----------------------------~~~~lkY~Dedgd   60 (85)
T d1ip9a_          11 KTTKIKFYYKDDIFALML--KGDTTYKELRSKIAPRIDT----------------------------DNFKLQTKLFDGS   60 (85)
T ss_dssp             CCEEEEECBTTCCEEEEE--CSCCCHHHHHHHHHHHHTS----------------------------SCEEEEECCSSSC
T ss_pred             CCEEEEEEECCcEEEEEe--CCCCCHHHHHHHHHHHhCC----------------------------CceEEEEEcCCCC
Confidence            457899999988544444  5557899999999999963                            1579999999999


Q ss_pred             eeecc
Q 019963          324 WMLVG  328 (333)
Q Consensus       324 wMLVG  328 (333)
                      |..+-
T Consensus        61 ~v~i~   65 (85)
T d1ip9a_          61 GEEIK   65 (85)
T ss_dssp             CSCCC
T ss_pred             EEEEe
Confidence            98654

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.76  E-value=1.5  Score=33.13  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=35.0

Q ss_pred             eeeCCCCCChHHHHHHHHHhhccccccccCCCCCcchhhhhhhhhccCCCCCCeEEEEEeCCCCeeec
Q 019963          260 KVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLV  327 (333)
Q Consensus       260 KVDL~~y~sY~eLs~aLekMF~~ftigq~gs~g~~g~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  327 (333)
                      .+|.....+|++...-|++|-..                          .+-+++|.|.|.+||.+-+
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l--------------------------~~~~f~i~Y~D~hgDLLPI   58 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHGDLLPL   58 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTSCEEEC
T ss_pred             eeccccccCHHHHHHHHHHHcCC--------------------------CCCcEEEEEecCCCCcccc
Confidence            57777889999999999998853                          1348999999999999854