Citrus Sinensis ID: 019968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTPQGGQVE
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccccccccccccccEEEEEEccccEEEEEEEccccHHHHHHHHHHcccccccccEEEEccEEEEcccccccccccccccEEEEEEEEccccEEEEEcccccEEEEEccccccHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccEEEEEEEEcccEEEEcccccEEEEEEEcccccccccccccccEEEEEcccccccccccccccccccEEEEccccccHHHHHHHHHHHHccccccccccEEccHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccEEEcccccEEEEccccccEEEEEEccccEEEEEEcccccHHHHHHHHHHcccccccccEEEEEccccccccccHHHcccccccEEEEEEEEccccEEEEEEccccEEEEEEcccccHHHHHHHHHHHccccccHHHcEEEEcccEcccccEHcHcccccccEEEEEEEEcccccEEEEEEEEcccHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEcEEEEcccccccHHHHHHHHHHHHHHHcccccccEcHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
msmacvalspvleeslnfpgnfthrpeklsndSILIFLSVggsvipmrvmesdsIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQelicdgeeleDQRLITDICKRNEAVIHLLVRKSAkvrakpvqkdFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQndllleplivesnfkLPLMIKRLISSTvdglergltpfdigcimcrktlkdESVIEQIVREAQdavlpgtsedgfLESVASIMDRhlddltpqggqve
Flexible Loop (DISEMBL)
MSMACVALSPVLEESLNFPGNFTHrpeklsndSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFhvergrnvgyvKQQIakkgrefvdlknqelicdgeeleDQRLITDICKRNEAVIHLlvrksakvrakpvqkdfeVSIEatelnekgadvvGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREaqdavlpgtsEDGFLESVASIMDRHLddltpqggqve
Low Complexity Region (SEG)
MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTPQGGQVE
Disordered region (IsUnstruct)
*****VALSPVL***LNFPGNFT****KLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVL*******************************
Disordered Region (DISOPRED)
****C*A*SPVLEE*LN**********KLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELN**************************LQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDD*********
Disordered Region (DISEMBL)
MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTPQGGQVE
Disordered Region (DISPRO)
*SMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTPQGGQVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
P0CG54	311	Polyubiquitin-B OS=Cavia	yes	no	0.465	0.498	0.345	6e-16
P22589	229	Polyubiquitin OS=Phytopht	N/A	no	0.594	0.864	0.312	1e-15
P0CG70	305	Polyubiquitin OS=Neurospo	N/A	no	0.435	0.475	0.355	3e-15
P0CH28	690	Polyubiquitin-C OS=Bos ta	yes	no	0.462	0.223	0.341	4e-15
P42740	457	Polyubiquitin OS=Aglaotha	N/A	no	0.435	0.317	0.355	5e-15
P0CG69	763	Polyubiquitin OS=Drosophi	yes	no	0.456	0.199	0.339	6e-15
P69315	305	Polyubiquitin (Fragment)	N/A	no	0.435	0.475	0.355	8e-15
P59669	457	Polyubiquitin OS=Geodia c	N/A	no	0.435	0.317	0.355	8e-15
P0CG76	381	Polyubiquitin-A OS=Dictyo	yes	no	0.435	0.380	0.355	8e-15
P0CG78	533	Polyubiquitin-F OS=Dictyo	no	no	0.435	0.272	0.355	9e-15

>sp|P0CG54|UBB_CAVPO Polyubiquitin-B OS=Cavia porcellus GN=UBB PE=2 SV=1

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 4/159 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 155 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 213

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 271

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPV 193
           I  G++LED R ++D   + E+ +HL++R    V A P+
Sbjct: 272 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYASPI 310

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Cavia porcellus (taxid: 10141)

>sp|P22589|UBIQP_PHYIN Polyubiquitin OS=Phytophthora infestans PE=1 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 13/211 (6%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SDSI +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE   ++  VKQ+I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDK--EGIPPDQQRL 119

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVR-------AKPVQKDFEVSIEATELN 207
           I  G++LED R ++D   + E+ +HL++R    ++        K +  D E S     + 
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVK 179

Query: 208 EKGADVVG--EHQFETLFMGYQIRERKLLQN 236
           +K  D  G    Q   +F G Q+ + + L +
Sbjct: 180 QKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Phytophthora infestans (taxid: 4787)

>sp|P0CG70|UBI4P_NEUCR Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ubi-4 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VKQ+I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDK--EGIPPDQQRL 119

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P0CH28|UBC_BOVIN Polyubiquitin-C OS=Bos taurus GN=UBC PE=1 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 4/158 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 535 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 593

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 594 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 651

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKP 192
           I  G++LED R ++D   + E+ +HL++R    V + P
Sbjct: 652 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVLSSP 689

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Bos taurus (taxid: 9913)

>sp|P42740|UBIQP_AGLNE Polyubiquitin OS=Aglaothamnion neglectum PE=2 SV=2

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY L
Sbjct: 231 IFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNL 289

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVKTKIQDK--EGIPPDQQRL 347

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 348 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 376

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Aglaothamnion neglectum (taxid: 2765)

>sp|P0CG69|UBIQP_DROME Polyubiquitin OS=Drosophila melanogaster GN=Ubi-p63E PE=3 SV=1

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 611 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 669

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 670 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 727

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRA 190
           I  G++LED R ++D   + E+ +HL++R    ++A
Sbjct: 728 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIQA 763

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Drosophila melanogaster (taxid: 7227)

>sp|P69315|UBIQP_LINUS Polyubiquitin (Fragment) OS=Linum usitatissimum PE=3 SV=2

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IFL ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 44  IFLKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LADYNI 102

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 103 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRL 160

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R + D   + E+ +HL++R
Sbjct: 161 IFAGKQLEDGRTLADYNIQKESTLHLVLR 189

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Linum usitatissimum (taxid: 4006)

>sp|P59669|UBIQP_GEOCY Polyubiquitin OS=Geodia cydonium PE=2 SV=2

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 155 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 213

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDK--EGIPPDQQRL 271

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL+VR
Sbjct: 272 IFAGKQLEDGRTLSDYNIQKESTLHLVVR 300

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Geodia cydonium (taxid: 6047)

>sp|P0CG76|UBIQA_DICDI Polyubiquitin-A OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1

 Score = 81.3 bits (199), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 155 IFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 213

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE   N+  VK +I  K  E +    Q L
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDK--EGIPPDQQRL 271

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 272 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Dictyostelium discoideum (taxid: 44689)

>sp|P0CG78|UBIQF_DICDI Polyubiquitin-F OS=Dictyostelium discoideum GN=ubqF PE=1 SV=1

 Score = 81.3 bits (199), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE   N+  VK +I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDK--EGIPPDQQRL 119

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
255551301	583	ubiquitin, putative [Ricinus communis] g	0.804	0.459	0.702	4e-97
225455384	585	PREDICTED: probable phosphatidylinositol	0.819	0.466	0.650	8e-94
356509263	583	PREDICTED: uncharacterized protein LOC10	0.804	0.459	0.634	6e-88
297812587	574	phosphatidylinositol 3-and 4-kinase fami	0.780	0.452	0.595	2e-76
225426304	583	PREDICTED: uncharacterized protein LOC10	0.804	0.459	0.572	2e-76
15237921	574	phosphatidylinositol 3- and 4-kinase fam	0.780	0.452	0.588	5e-76
255564699	585	protein with unknown function [Ricinus c	0.789	0.449	0.589	5e-74
357463917	593	Phosphatidylinositol 4-kinase type 2-bet	0.792	0.445	0.568	1e-73
297828377	566	phosphatidylinositol 3-and 4-kinase fami	0.771	0.454	0.545	2e-73
18407090	566	phosphoinositide 4-kinase gamma 4 [Arabi	0.765	0.450	0.541	2e-72

>gi|255551301|ref|XP_002516697.1| ubiquitin, putative [Ricinus communis] gi|223544192|gb|EEF45716.1| ubiquitin, putative [Ricinus communis]

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 191/272 (70%), Positives = 220/272 (80%), Gaps = 4/272 (1%)

Query: 3   MACVALSPVLEESLNFPGNFT--HRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MA VALS V EESLN   N    H P + SNDSILIFLSV GS+IPM VMESDSIASVKL
Sbjct: 1   MASVALSTVNEESLNLHCNLARWHGPPR-SNDSILIFLSVAGSLIPMHVMESDSIASVKL 59

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQ+  GFFVKKQKLVFEGRELARSNS VRDYG+ADG VLHLVLRLSDLQAITV TVCGK
Sbjct: 60  RIQASKGFFVKKQKLVFEGRELARSNSHVRDYGVADGKVLHLVLRLSDLQAITVRTVCGK 119

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
            F+FHV+RGRNVGYVKQQI+KKG+ F +L +QELICDGEELEDQR+I DICK N++VIHL
Sbjct: 120 EFKFHVQRGRNVGYVKQQISKKGKGF-NLIDQELICDGEELEDQRIIDDICKSNDSVIHL 178

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLL 240
           LVRKSAKVR K + +DFE+SIEA +L++    VVGEHQ + L + Y+  +RK L  D +L
Sbjct: 179 LVRKSAKVRTKTIDRDFELSIEALDLSDSADCVVGEHQKQALALEYRALDRKPLLQDFIL 238

Query: 241 EPLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
           EPLIV    +LPL++K+LI+ST  GLERG  P
Sbjct: 239 EPLIVNFKVELPLVLKKLINSTSLGLERGNEP 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455384|ref|XP_002277933.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Vitis vinifera]

 Score =  350 bits (897), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 179/275 (65%), Positives = 220/275 (80%), Gaps = 2/275 (0%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS+A V++SPV E+S NFP  FT R     ++SILI+L+VGGSVIPM V+ESDSIASVK 
Sbjct: 1   MSIASVSVSPVCEDSPNFPCYFTDRCGPCLSNSILIYLTVGGSVIPMHVLESDSIASVKR 60

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           +IQ++ G FVK QKLVFEGRELAR+NSRV+DYG+ DGNVLHLVLRLSDLQAITV +VCGK
Sbjct: 61  KIQTFKGSFVKMQKLVFEGRELARNNSRVQDYGVTDGNVLHLVLRLSDLQAITVRSVCGK 120

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
             EF VER RNVGYVKQQIAK G+ F DLK+QEL CDGEELEDQRLI DICK+N+ VIHL
Sbjct: 121 ELEFQVERSRNVGYVKQQIAKTGKGFFDLKDQELTCDGEELEDQRLIHDICKKNDVVIHL 180

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVG--EHQFETLFMGYQIRERKLLQNDL 238
           L+ +SAKVR KP++KDF+VSI A++L++K  DVV   E+Q+ T     ++ +RK L +D+
Sbjct: 181 LICRSAKVRTKPIKKDFKVSIVASDLSDKRDDVVDKEEYQWRTQSKEPEVVDRKSLLSDV 240

Query: 239 LLEPLIVESNFKLPLMIKRLISSTVDGLERGLTPF 273
           LLEPLIV  N +L  ++K LI+ST+DGL RG  P 
Sbjct: 241 LLEPLIVNPNIELSSVVKELITSTIDGLNRGNQPI 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509263|ref|XP_003523370.1| PREDICTED: uncharacterized protein LOC100812724 [Glycine max]

 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 172/271 (63%), Positives = 214/271 (78%), Gaps = 3/271 (1%)

Query: 3   MACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRI 62
           MACVAL PV EESLN  G FT        +SILI+L+VGGSVIPM +M++DSIASVKLRI
Sbjct: 1   MACVALHPVCEESLNR-GEFTSCFSPHLRESILIYLTVGGSVIPMHIMKTDSIASVKLRI 59

Query: 63  QSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVF 122
           Q++ GFFVKKQKLVFEG+ELAR+ S +RDYG+ DGNVLHLVLRLSDL+AITV T+CGK F
Sbjct: 60  QTFKGFFVKKQKLVFEGKELARNRSCIRDYGVGDGNVLHLVLRLSDLKAITVRTMCGKEF 119

Query: 123 EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182
             +VE+ R+VGYVKQQIAKKG+ F+D K+QELIC+GEELEDQRLI DICK N+AVIH LV
Sbjct: 120 GLYVEKSRSVGYVKQQIAKKGQGFLDHKDQELICEGEELEDQRLIEDICKDNDAVIHFLV 179

Query: 183 RKS-AKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLE 241
           RKS AKVR KPV KDFE+SIEA+ ++    ++  + Q  ++ +  ++ ER  L  D +LE
Sbjct: 180 RKSDAKVRTKPVDKDFELSIEASYVHNLVPNLHAD-QLGSVSVTNEVLERSQLTRDFVLE 238

Query: 242 PLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
           P+I+ SN K+PL+I+ LI ST +GLE+G  P
Sbjct: 239 PIIMNSNIKIPLVIQELIKSTSEGLEKGCKP 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812587|ref|XP_002874177.1| phosphatidylinositol 3-and 4-kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297320014|gb|EFH50436.1| phosphatidylinositol 3-and 4-kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/272 (59%), Positives = 196/272 (72%), Gaps = 12/272 (4%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS+A VALSP LEE +NFPG        L +D IL+FL++ GSVIP RVMESDSIASVKL
Sbjct: 1   MSVASVALSPALEELVNFPGTIGRFGLNL-DDPILVFLTIAGSVIPKRVMESDSIASVKL 59

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQS  GFFVKKQKL+++GRE  R++S++RDYGLADG +LHLV+RLSDLQAI+V TV GK
Sbjct: 60  RIQSIKGFFVKKQKLLYDGREPTRNDSQIRDYGLADGKLLHLVIRLSDLQAISVRTVDGK 119

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
            FE  VER RNVG+VKQQIA K +E    ++ EL  DGEEL+DQRLITD+CK  E VIHL
Sbjct: 120 EFELVVERSRNVGFVKQQIASKEKELGIPRDHELTLDGEELDDQRLITDLCKNGENVIHL 179

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLL 240
           L+RKS KVRAKPV KDFEV IE   +N K  +V G      L         +    +  +
Sbjct: 180 LIRKSVKVRAKPVGKDFEVFIE--NVNHK-HNVDGRRGKNIL--------SQAKPKEFFV 228

Query: 241 EPLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
           EP+IV    KLPL++K LISST++GLE+G  P
Sbjct: 229 EPVIVNPEIKLPLLLKELISSTLEGLEKGNGP 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426304|ref|XP_002268042.1| PREDICTED: uncharacterized protein LOC100249570 [Vitis vinifera]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/274 (57%), Positives = 197/274 (71%), Gaps = 6/274 (2%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS+A VA SP+  ES++ PG F  +PE  S++SIL++L+V GSVIP+RV+ESDSIASVK 
Sbjct: 1   MSVAAVASSPIRGESVHSPGFFHGQPEPCSSESILVYLTVAGSVIPLRVLESDSIASVKF 60

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQ   GF VKKQKLVF GRELAR++S VRDYG+  GNVLHLVL+LSDL AITV T CGK
Sbjct: 61  RIQICQGFVVKKQKLVFGGRELARNDSLVRDYGVTSGNVLHLVLKLSDLLAITVRTACGK 120

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
            FEFHV+R  NVGY+KQ+I K  + FVDL++ E  C+G +L+DQ LI DIC  ++ +IHL
Sbjct: 121 EFEFHVDRYSNVGYLKQRIVKTRKCFVDLEDHEFFCNGNKLDDQVLIDDICT-SDPIIHL 179

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVV--GEHQFETLFMGYQIRERKLLQNDL 238
           LV+KSAKVRAKPV KDFE+S+ A + NE   D    GE++ E      Q+ E++    D 
Sbjct: 180 LVQKSAKVRAKPVDKDFELSVVAEDRNEGTRDGANEGENRSEEQL---QVVEKEPPDRDF 236

Query: 239 LLEPLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
            LEP+IV    K P  I  LI+ST DGL+ G  P
Sbjct: 237 WLEPIIVNPKLKFPSFIWDLINSTFDGLDSGNHP 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237921|ref|NP_197812.1| phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein [Arabidopsis thaliana] gi|10177083|dbj|BAB10389.1| ubiquitin [Arabidopsis thaliana] gi|110741569|dbj|BAE98733.1| ubiquitin [Arabidopsis thaliana] gi|332005891|gb|AED93274.1| phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein [Arabidopsis thaliana]

 Score =  290 bits (743), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 160/272 (58%), Positives = 196/272 (72%), Gaps = 12/272 (4%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS+A VALSP LEE +NFPG        L +D IL+FL++ GSVIP RVMESDSIASVKL
Sbjct: 1   MSVASVALSPALEELVNFPGIIGRFGFNL-DDPILVFLTIAGSVIPKRVMESDSIASVKL 59

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQS  GFFVKKQKL+++GRE++R++S++RDYGLADG +LHLV+RLSDLQAI+V TV GK
Sbjct: 60  RIQSIKGFFVKKQKLLYDGREVSRNDSQIRDYGLADGKLLHLVIRLSDLQAISVRTVDGK 119

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
            FE  VER RNVGYVKQQIA K +E    ++ EL  DGEEL+DQRLITD+C+  + VIHL
Sbjct: 120 EFELVVERSRNVGYVKQQIASKEKELGIPRDHELTLDGEELDDQRLITDLCQNGDNVIHL 179

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLL 240
           L+ KSAKVRAKPV KDFEV IE         DV  +H  +         E K    +  +
Sbjct: 180 LISKSAKVRAKPVGKDFEVFIE---------DVNHKHNVDGRRGKNISSEAK--PKEFFV 228

Query: 241 EPLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
           EP IV    KLP+++K LISST++GLE+G  P
Sbjct: 229 EPFIVNPEIKLPILLKELISSTLEGLEKGNGP 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564699|ref|XP_002523344.1| protein with unknown function [Ricinus communis] gi|223537432|gb|EEF39060.1| protein with unknown function [Ricinus communis]

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 161/273 (58%), Positives = 194/273 (71%), Gaps = 10/273 (3%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS A VALSP+    +     F+ +P   S++ ILI+LSVG SVIPMRV+ SDSI SVKL
Sbjct: 1   MSSAGVALSPIQNGVVLPVDYFSAQPS--SDEYILIYLSVGRSVIPMRVLGSDSIESVKL 58

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQS  GF VK QKLV  GREL+RSNS +RDYG+ DGNVLHLVLRLSDLQ I V T  GK
Sbjct: 59  RIQSCKGFVVKNQKLVCGGRELSRSNSLIRDYGVTDGNVLHLVLRLSDLQVIKVKTTSGK 118

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIH 179
            + F VERGR+VGYVKQQ+AKK REF    + E++CDGEEL+DQRLI DICK  N+AVIH
Sbjct: 119 EYTFCVERGRDVGYVKQQVAKKEREFD--SDHEVVCDGEELDDQRLIDDICKYNNDAVIH 176

Query: 180 LLVRKSAKVRAKPVQKDFEVSIEATELNE----KGADVVGEHQFETLF-MGYQIRERKLL 234
            LVRKS KVR KPV K+FE+SI A  LNE    +  D+VGE    T + +  QI  RK  
Sbjct: 177 FLVRKSVKVRTKPVDKNFELSIVAPRLNEENGTRNCDIVGEENNGTKYDVDKQILFRKPP 236

Query: 235 QNDLLLEPLIVESNFKLPLMIKRLISSTVDGLE 267
             D L+EP+IV    +LP +IK ++++T DGLE
Sbjct: 237 DRDFLIEPIIVNPKIELPYVIKDMVNATFDGLE 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463917|ref|XP_003602240.1| Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] gi|355491288|gb|AES72491.1| Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula]

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/271 (56%), Positives = 195/271 (71%), Gaps = 7/271 (2%)

Query: 3   MACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRI 62
           MAC+ L P+ E      G FT        +SILI+L+VGGSVIPM ++E+DSIASVKLRI
Sbjct: 1   MACLVLHPMHEN-----GEFTSSFSPHMRESILIYLTVGGSVIPMHILETDSIASVKLRI 55

Query: 63  QSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVF 122
           Q+  GFFVKK KLVFEG+ELA + S V DYG+ADGNVLHLVLRLSDL+AITV T+ GK F
Sbjct: 56  QTLEGFFVKKLKLVFEGKELAHNKSCVGDYGVADGNVLHLVLRLSDLKAITVRTLSGKEF 115

Query: 123 EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182
            F+VE+ RNVGYVKQQIAKKGR   +L +QEL+ +GE LEDQRLI DICK N+AVIHLLV
Sbjct: 116 GFYVEKTRNVGYVKQQIAKKGRGVFNLADQELVWEGEALEDQRLIEDICKDNDAVIHLLV 175

Query: 183 RKS-AKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLE 241
           R S +KVR KPV+KD E+SIEA   ++   +   + Q   + +  ++ +R  L  + LLE
Sbjct: 176 RISDSKVRTKPVEKDLELSIEALFAHDTVPNSAVD-QLGPVSITNKVLKRNQLTREFLLE 234

Query: 242 PLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
           P+   SN K+P ++  LI  T++GLE+G  P
Sbjct: 235 PIFNNSNIKIPPVVHELIKVTLEGLEKGRKP 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828377|ref|XP_002882071.1| phosphatidylinositol 3-and 4-kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327910|gb|EFH58330.1| phosphatidylinositol 3-and 4-kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/273 (54%), Positives = 195/273 (71%), Gaps = 16/273 (5%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHR-PEKLSNDSILIFLSVGGSVIPMRVMESDSIASVK 59
           MS A VALSPV  E L  P    +   +   +D+I+I+L++ G+VIPMRV+ESDSI SVK
Sbjct: 1   MSSAGVALSPVRSEPLIMPLVRANSCADSYPDDTIMIYLTLPGTVIPMRVLESDSIESVK 60

Query: 60  LRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCG 119
           LRIQSY GF V+ QKLVF GRELARSNS +RDYG+++GN+LHLVL+LSDLQ + V T CG
Sbjct: 61  LRIQSYRGFVVRNQKLVFGGRELARSNSNMRDYGVSEGNILHLVLKLSDLQVLDVKTTCG 120

Query: 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIH 179
           K   FHVERGRN+GYVK+QI+KK  +FVD   QEL+ +GE+LEDQ LI DIC+ +++V+H
Sbjct: 121 KHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQELLYEGEKLEDQSLINDICRNDDSVLH 180

Query: 180 LLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLL 239
           LLVR+SAKVRAKPV+K+FE+SI A +  +K                 +  +R +    L 
Sbjct: 181 LLVRRSAKVRAKPVEKNFELSIVAPQAKDKKG---------------READRIVPPKKLS 225

Query: 240 LEPLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
           LEP+IV S  K+PL++K +I S  DGL+ G +P
Sbjct: 226 LEPVIVNSKAKVPLVVKDMIKSASDGLKSGNSP 258

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407090|ref|NP_566076.1| phosphoinositide 4-kinase gamma 4 [Arabidopsis thaliana] gi|42571253|ref|NP_973700.1| phosphoinositide 4-kinase gamma 4 [Arabidopsis thaliana] gi|16930425|gb|AAL31898.1|AF419566_1 At2g46500/F11C10.19 [Arabidopsis thaliana] gi|4415931|gb|AAD20161.1| expressed protein [Arabidopsis thaliana] gi|20197828|gb|AAM15268.1| expressed protein [Arabidopsis thaliana] gi|27363382|gb|AAO11610.1| At2g46500/F11C10.19 [Arabidopsis thaliana] gi|330255614|gb|AEC10708.1| phosphoinositide 4-kinase gamma 4 [Arabidopsis thaliana] gi|330255615|gb|AEC10709.1| phosphoinositide 4-kinase gamma 4 [Arabidopsis thaliana]

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/275 (54%), Positives = 194/275 (70%), Gaps = 20/275 (7%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRP-EKLSNDSILIFLSVGGSVIPMRVMESDSIASVK 59
           MS A VALSPV  E L  P    +   +   +D+I+I+L++ GSVIPMRV+ESDSI SVK
Sbjct: 1   MSSAGVALSPVRSEPLIMPLVRANSCLDSYPDDTIMIYLTLPGSVIPMRVLESDSIESVK 60

Query: 60  LRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCG 119
           LRIQSY GF V+ QKLVF GRELARSNS +RDYG+++GN+LHLVL+LSDLQ + V T CG
Sbjct: 61  LRIQSYRGFVVRNQKLVFGGRELARSNSNMRDYGVSEGNILHLVLKLSDLQVLDVKTTCG 120

Query: 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIH 179
           K   FHVERGRN+GYVK+QI+KK  +FVD   QE++ +GE+LEDQ LI DIC+ +++V+H
Sbjct: 121 KHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLH 180

Query: 180 LLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLL--QND 237
           LLVR+SAKVR KPV+K+FE+SI A +  +K                   RE K +     
Sbjct: 181 LLVRRSAKVRVKPVEKNFELSIVAPQAKDKKG-----------------REAKSIVPPKK 223

Query: 238 LLLEPLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
           L LEP++V S  K+PL++K +I S  DGL+ G +P
Sbjct: 224 LSLEPVVVNSKAKVPLVVKDMIQSASDGLKSGNSP 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2169774	574	AT5G24240 [Arabidopsis thalian	0.780	0.452	0.591	1e-88
TAIR|locus:2039064	566	PI4K GAMMA 4 "phosphoinositide	0.771	0.454	0.538	6.4e-87
TAIR|locus:2019459	213	AT1G64470 "AT1G64470" [Arabido	0.573	0.896	0.552	1.5e-49
DICTYBASE|DDB_G0286907	229	ubqD "ubiquitin D" [Dictyostel	0.594	0.864	0.303	1.3e-16
CGD|CAL0004945	229	UBI4 [Candida albicans (taxid:	0.594	0.864	0.298	1.7e-16
UNIPROTKB|Q5ADS0	229	UBI4 "Putative uncharacterized	0.594	0.864	0.298	1.7e-16
TAIR|locus:2138386	229	UBQ11 "AT4G05050" [Arabidopsis	0.588	0.855	0.306	3.9e-16
UNIPROTKB|F1PDG4	229	UBB "Uncharacterized protein"	0.594	0.864	0.293	3.9e-16
UNIPROTKB|P0CG47	229	UBB "Polyubiquitin-B" [Homo sa	0.594	0.864	0.293	3.9e-16
UNIPROTKB|A7U5U2	229	UBB "Uncharacterized protein"	0.594	0.864	0.293	3.9e-16

TAIR|locus:2169774 AT5G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
 Identities = 161/272 (59%), Positives = 199/272 (73%)

Query:     1 MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
             MS+A VALSP LEE +NFPG        L +D IL+FL++ GSVIP RVMESDSIASVKL
Sbjct:     1 MSVASVALSPALEELVNFPGIIGRFGFNL-DDPILVFLTIAGSVIPKRVMESDSIASVKL 59

Query:    61 RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
             RIQS  GFFVKKQKL+++GRE++R++S++RDYGLADG +LHLV+RLSDLQAI+V TV GK
Sbjct:    60 RIQSIKGFFVKKQKLLYDGREVSRNDSQIRDYGLADGKLLHLVIRLSDLQAISVRTVDGK 119

Query:   121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
              FE  VER RNVGYVKQQIA K +E    ++ EL  DGEEL+DQRLITD+C+  + VIHL
Sbjct:   120 EFELVVERSRNVGYVKQQIASKEKELGIPRDHELTLDGEELDDQRLITDLCQNGDNVIHL 179

Query:   181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLL 240
             L+ KSAKVRAKPV KDFEV IE  ++N K  +V G         G  I   +    +  +
Sbjct:   180 LISKSAKVRAKPVGKDFEVFIE--DVNHKH-NVDGRR-------GKNISS-EAKPKEFFV 228

Query:   241 EPLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
             EP IV    KLP+++K LISST++GLE+G  P
Sbjct:   229 EPFIVNPEIKLPILLKELISSTLEGLEKGNGP 260

GO:0009507 "chloroplast" evidence=ISM

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2039064 PI4K GAMMA 4 "phosphoinositide 4-kinase gamma 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
 Identities = 147/273 (53%), Positives = 196/273 (71%)

Query:     1 MSMACVALSPVLEESLNFP-GNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVK 59
             MS A VALSPV  E L  P        +   +D+I+I+L++ GSVIPMRV+ESDSI SVK
Sbjct:     1 MSSAGVALSPVRSEPLIMPLVRANSCLDSYPDDTIMIYLTLPGSVIPMRVLESDSIESVK 60

Query:    60 LRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCG 119
             LRIQSY GF V+ QKLVF GRELARSNS +RDYG+++GN+LHLVL+LSDLQ + V T CG
Sbjct:    61 LRIQSYRGFVVRNQKLVFGGRELARSNSNMRDYGVSEGNILHLVLKLSDLQVLDVKTTCG 120

Query:   120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIH 179
             K   FHVERGRN+GYVK+QI+KK  +FVD   QE++ +GE+LEDQ LI DIC+ +++V+H
Sbjct:   121 KHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLH 180

Query:   180 LLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLL 239
             LLVR+SAKVR KPV+K+FE+SI A +  +K        + +++     +  +KL      
Sbjct:   181 LLVRRSAKVRVKPVEKNFELSIVAPQAKDKKG-----REAKSI-----VPPKKLS----- 225

Query:   240 LEPLIVESNFKLPLMIKRLISSTVDGLERGLTP 272
             LEP++V S  K+PL++K +I S  DGL+ G +P
Sbjct:   226 LEPVVVNSKAKVPLVVKDMIQSASDGLKSGNSP 258

GO:0009507 "chloroplast" evidence=ISM

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004430 "1-phosphatidylinositol 4-kinase activity" evidence=IDA

GO:0046854 "phosphatidylinositol phosphorylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2019459 AT1G64470 "AT1G64470" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 106/192 (55%), Positives = 141/192 (73%)

Query:     1 MSMACVALSPVLEESLNFPGNFTHRPEK-LSNDSILIFLSVGGSVIPMRVMESDSIASVK 59
             MS+A VALSP+   S    G F        S  S+L+FLSV GS +PM ++ESDSIA VK
Sbjct:     1 MSVADVALSPIHRGSAFAVGGFGQSTTTHYSVKSVLVFLSVSGSTMPMLILESDSIAEVK 60

Query:    60 LRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCG 119
             LRIQ+ NGF V++QKLVF GRELAR+ SRV+DYG+  G+VLHLVL+L D   +TV T CG
Sbjct:    61 LRIQTCNGFRVRRQKLVFSGRELARNASRVKDYGVTGGSVLHLVLKLYDPLLVTVITTCG 120

Query:   120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIH 179
             KVF+FHV+R RNVGY+K++I+K+G+ F ++ +QE++  GE+L+D R+I  ICK   +VIH
Sbjct:   121 KVFQFHVDRRRNVGYLKKRISKEGKGFPEVDDQEILFKGEKLDDNRIIDGICKDGNSVIH 180

Query:   180 LLVRKSAKVRAK 191
             LLV+KS +   K
Sbjct:   181 LLVKKSVEDTVK 192

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0286907 ubqD "ubiquitin D" [Dictyostelium discoideum (taxid:44689)]

 Score = 207 (77.9 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 64/211 (30%), Positives = 103/211 (48%)

Query:    36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
             IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct:     3 IFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query:    95 ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
                + LHLVLRL     I V T+ GK     VE   N+  VK +I  K  E +    Q L
Sbjct:    62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDK--EGIPPDQQRL 119

Query:   155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVR-------AKPVQKDFEVSIEATELN 207
             I  G++LED R ++D   + E+ +HL++R    ++        K +  + E S     + 
Sbjct:   120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVK 179

Query:   208 EKGADVVG--EHQFETLFMGYQIRERKLLQN 236
              K  D  G    Q   +F G Q+ + + L +
Sbjct:   180 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

CGD|CAL0004945 UBI4 [Candida albicans (taxid:5476)]

 Score = 206 (77.6 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 63/211 (29%), Positives = 106/211 (50%)

Query:    36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
             IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct:     3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query:    95 ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
                + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct:    62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRL 119

Query:   155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSA--KVRAKPVQ-KDFEVSIEATE----LN 207
             I  G++LED R ++D   + E+ +HL++R     ++  K +  K   + +E+++    + 
Sbjct:   120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179

Query:   208 EKGADVVG--EHQFETLFMGYQIRERKLLQN 236
              K  D  G    Q   +F G Q+ + + L +
Sbjct:   180 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210

GO:0016567 "protein ubiquitination" evidence=IGI;ISS;IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0031386 "protein tag" evidence=IGI;ISS

GO:0030447 "filamentous growth" evidence=IMP

GO:0033554 "cellular response to stress" evidence=IEP;IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

UNIPROTKB|Q5ADS0 UBI4 "Putative uncharacterized protein UBI4" [Candida albicans SC5314 (taxid:237561)]

 Score = 206 (77.6 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 63/211 (29%), Positives = 106/211 (50%)

Query:    36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
             IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct:     3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query:    95 ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
                + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct:    62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRL 119

Query:   155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSA--KVRAKPVQ-KDFEVSIEATE----LN 207
             I  G++LED R ++D   + E+ +HL++R     ++  K +  K   + +E+++    + 
Sbjct:   120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179

Query:   208 EKGADVVG--EHQFETLFMGYQIRERKLLQN 236
              K  D  G    Q   +F G Q+ + + L +
Sbjct:   180 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009405 "pathogenesis" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IGI;ISS;IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0031386 "protein tag" evidence=IGI;ISS

GO:0033554 "cellular response to stress" evidence=IEP;IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

TAIR|locus:2138386 UBQ11 "AT4G05050" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 64/209 (30%), Positives = 104/209 (49%)

Query:    36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
             IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct:     3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LADYNI 61

Query:    95 ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
                + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct:    62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRL 119

Query:   155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSA--KVRAKPVQ-KDFEVSIEATEL--NEK 209
             I  G++LED R + D   + E+ +HL++R     ++  K +  K   + +E+++   N K
Sbjct:   120 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179

Query:   210 GA--DVVG--EHQFETLFMGYQIRERKLL 234
                 D  G    Q   +F G Q+ + + L
Sbjct:   180 AKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208

GO:0005622 "intracellular" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|F1PDG4 UBB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 203 (76.5 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 62/211 (29%), Positives = 104/211 (49%)

Query:    36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
             IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct:     3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query:    95 ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
                + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct:    62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 119

Query:   155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVR-------AKPVQKDFEVS--IEATE 205
             I  G++LED R ++D   + E+ +HL++R    ++        K +  + E S  IE  +
Sbjct:   120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVK 179

Query:   206 LNEKGADVVGEHQFETLFMGYQIRERKLLQN 236
                +  + +   Q   +F G Q+ + + L +
Sbjct:   180 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210

GO:0097009 "energy homeostasis" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

UNIPROTKB|P0CG47 UBB "Polyubiquitin-B" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 62/211 (29%), Positives = 104/211 (49%)

Query:    36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
             IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct:     3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query:    95 ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
                + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct:    62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 119

Query:   155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVR-------AKPVQKDFEVS--IEATE 205
             I  G++LED R ++D   + E+ +HL++R    ++        K +  + E S  IE  +
Sbjct:   120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVK 179

Query:   206 LNEKGADVVGEHQFETLFMGYQIRERKLLQN 236
                +  + +   Q   +F G Q+ + + L +
Sbjct:   180 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000080 "G1 phase of mitotic cell cycle" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0000187 "activation of MAPK activity" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002224 "toll-like receptor signaling pathway" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0002756 "MyD88-independent toll-like receptor signaling pathway" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0007220 "Notch receptor processing" evidence=TAS

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=TAS

GO:0007254 "JNK cascade" evidence=TAS

GO:0008063 "Toll signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0034130 "toll-like receptor 1 signaling pathway" evidence=TAS

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=TAS

GO:0034138 "toll-like receptor 3 signaling pathway" evidence=TAS

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=TAS

GO:0035666 "TRIF-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0046788 "egress of virus within host cell" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050852 "T cell receptor signaling pathway" evidence=TAS

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=TAS

GO:0051403 "stress-activated MAPK cascade" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0070423 "nucleotide-binding oligomerization domain containing signaling pathway" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A7U5U2 UBB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 62/211 (29%), Positives = 104/211 (49%)

Query:    36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
             IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct:     3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query:    95 ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
                + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct:    62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 119

Query:   155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVR-------AKPVQKDFEVS--IEATE 205
             I  G++LED R ++D   + E+ +HL++R    ++        K +  + E S  IE  +
Sbjct:   120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVK 179

Query:   206 LNEKGADVVGEHQFETLFMGYQIRERKLLQN 236
                +  + +   Q   +F G Q+ + + L +
Sbjct:   180 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210

GO:0097009 "energy homeostasis" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	2e-11
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	3e-07
cd01803	76	cd01803, Ubiquitin, Ubiquitin	8e-07
smart00213	72	smart00213, UBQ, Ubiquitin homologues	3e-06
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	3e-06
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	5e-05
cd01803	76	cd01803, Ubiquitin, Ubiquitin	5e-05
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	9e-05
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	1e-04
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	0.001
smart00213	72	smart00213, UBQ, Ubiquitin homologues	0.002
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	0.003
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	0.004

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
            G  I + V  SD+++ +K +I+   G  V +Q+L+F G+ L   ++ + +YG+ DG+ L
Sbjct: 4   DGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVL-EDDTTLSEYGIQDGSTL 62

Query: 101 HLVLRLS 107
           HLVLRL 
Sbjct: 63  HLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
            G    + V   D++A +K +I +  G   ++Q+L++ G+ L + +  + DYG+ DG+ L
Sbjct: 6   TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKIL-KDDKTLSDYGIQDGSTL 64

Query: 101 HLVLR 105
           HLVLR
Sbjct: 65  HLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L      + DY +   + LH
Sbjct: 10  GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLH 68

Query: 102 LVLRL 106
           LVLRL
Sbjct: 69  LVLRL 73

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
            G  I + V  SD+++ +K +I    G   ++Q+L+++G+ L   +  + DYG+ DG+ +
Sbjct: 9   DGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVL-EDDRTLADYGIQDGSTI 67

Query: 101 HLVLR 105
           HLVLR
Sbjct: 68  HLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
            G ++   +  SD ++ +K++I    G    KQKL +EG  +  SNS    Y LA+G ++
Sbjct: 6   NGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAY-YNLANGTII 64

Query: 101 HLVLR 105
           HL L+
Sbjct: 65  HLQLK 69

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNE 175
           T+ GK     V+    V  +K++I  K    + +  Q LI  G+ LED   +++   ++ 
Sbjct: 2   TLDGKTITLEVDPSDTVSELKEKIEDKEG--IPVDQQRLIFSGKVLEDDTTLSEYGIQDG 59

Query: 176 AVIHLLVR 183
           + +HL++R
Sbjct: 60  STLHLVLR 67

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 32  DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVR 90
           D++ +F+ ++ G+   +RV   +++ SVK +IQ   G  V +Q L++   EL      + 
Sbjct: 26  DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYC-LN 84

Query: 91  DYGLADGNVLHLVLRL 106
           DY +++G  L LVL +
Sbjct: 85  DYNISEGCTLKLVLAM 100

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + +  +D +  +K R++   G   ++Q+L++ G+++   +    DY L  G+VLH
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLH 68

Query: 102 LVLRL 106
           LVL L
Sbjct: 69  LVLAL 73

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 59  KLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105
           K +I    G  V++Q+L++ GR L + +  + +Y + DG+ +HLV R
Sbjct: 27  KEKIAEEVGIPVEQQRLIYSGRVL-KDDETLSEYKVEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T+ GK     V+    V  +K++IA+     +  + Q LI  G+ LED R + D  
Sbjct: 3   LTVKTLDGKTITLEVKPSDTVSELKEKIAE--LTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 172 KRNEAVIHLLVR 183
            ++ + IHL++R
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 52  SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106
            +++  VK+ +Q   G  VK+ +L++ G++++    ++ DY +  G+ +H+VL+L
Sbjct: 20  DNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDL-KLSDYKVVPGSTIHMVLQL 73

Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK 172
           TV T+ GK FE  V     V  +K +IA K  E V  + Q LI  G+ L+D + ++D   
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAK--EGVPPEQQRLIYAGKILKDDKTLSDYGI 58

Query: 173 RNEAVIHLLVR 183
           ++ + +HL++R
Sbjct: 59  QDGSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.78
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.75
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.71
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.69
PTZ00044	76	ubiquitin; Provisional	99.69
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.67
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.67
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.66
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.66
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.64
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.64
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.64
PTZ00044	76	ubiquitin; Provisional	99.63
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.63
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.63
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.62
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.62
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.61
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.6
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.6
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.6
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.59
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.59
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.58
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.58
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.58
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.58
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.56
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.56
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.55
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.55
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.54
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.54
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.53
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.53
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.5
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.49
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.49
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.48
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.48
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.47
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.47
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.47
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.46
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.46
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.43
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.43
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.43
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.4
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.34
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.34
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.34
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.32
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.32
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.31
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.29
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.28
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.27
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.24
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.17
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.16
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.11
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.1
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.07
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.04
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.04
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.0
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.99
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.97
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	98.96
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	98.94
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	98.92
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.89
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.83
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.72
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.71
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.71
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.65
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.59
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.48
PLN02560	308	enoyl-CoA reductase	98.44
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.4
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.36
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.35
PLN02560	308	enoyl-CoA reductase	98.27
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.16
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.15
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.1
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	97.99
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.97
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.96
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.94
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	97.9
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.75
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.75
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	97.66
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.61
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	97.26
KOG4495	110	consensus RNA polymerase II transcription elongati	97.14
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	96.76
KOG4495	110	consensus RNA polymerase II transcription elongati	96.45
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	96.34
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.18
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	96.04
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	95.9
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	95.75
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	95.73
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	95.66
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	95.65
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	95.6
KOG0013	231	consensus Uncharacterized conserved protein [Funct	95.52
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	95.47
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	95.02
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	94.92
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	94.9
KOG2381	286	consensus Phosphatidylinositol 4-kinase [Signal tr	94.9
PF13019	162	Telomere_Sde2: Telomere stability and silencing	94.63
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	94.6
PF13019	162	Telomere_Sde2: Telomere stability and silencing	94.48
COG5417	81	Uncharacterized small protein [Function unknown]	94.45
KOG0013	231	consensus Uncharacterized conserved protein [Funct	93.98
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	93.68
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	93.66
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	93.48
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	93.48
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	93.39
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	92.71
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	92.5
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	91.63
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	91.39
KOG1639	297	consensus Steroid reductase required for elongatio	91.21
KOG1639	297	consensus Steroid reductase required for elongatio	91.16
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	90.19
COG5417	81	Uncharacterized small protein [Function unknown]	89.73
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	89.69
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	89.46
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	88.55
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	88.42
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	88.3
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	87.73
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	87.65
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	87.52
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	87.23
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	86.91
KOG0012	380	consensus DNA damage inducible protein [Replicatio	86.54
KOG4583	391	consensus Membrane-associated ER protein involved	85.91
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	84.64
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	84.38
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	83.96
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	83.8
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	82.57

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.78  E-value=8.9e-19  Score=143.57  Aligned_cols=93  Identities=23%  Similarity=0.265  Sum_probs=87.6

Q ss_pred             ccccccccceeeeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCccccc
Q 019968           91 DYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI  170 (333)
Q Consensus        91 dygI~~gstV~Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy  170 (333)
                      -+++-+-+++|+.+++++.|+|+|++.+|++++++|++++||++||++|++++|+|  +++|+|+|+|+.|+|+.+|++|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy   86 (103)
T cd01802           9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIP--VAQQHLIWNNMELEDEYCLNDY   86 (103)
T ss_pred             ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHc
Confidence            35566678999999999999999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             CCCCCCEEEEEeecC
Q 019968          171 CKRNEAVIHLLVRKS  185 (333)
Q Consensus       171 ~I~~gsvIhLv~r~~  185 (333)
                      +|+++++||++++..
T Consensus        87 ~I~~~stL~l~~~l~  101 (103)
T cd01802          87 NISEGCTLKLVLAMR  101 (103)
T ss_pred             CCCCCCEEEEEEecC
Confidence            999999999998853

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.75  E-value=3.7e-18  Score=131.20  Aligned_cols=73  Identities=22%  Similarity=0.324  Sum_probs=71.1

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      |+|+|++.+|++++++|++++||++||++|++++|+|  +++|+|+|+|++|+|+.+|++|||+++++|||++|.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVP--EEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            7899999999999999999999999999999999999  999999999999999999999999999999999885

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.71  E-value=3.3e-17  Score=125.95  Aligned_cols=72  Identities=17%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+||+  +++++++|++++||++||++|++++|+|  +++|+|+|+|++|+|+++|++|+++++++||+++|+.
T Consensus         1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~   72 (74)
T cd01793           1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGID--VEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLL   72 (74)
T ss_pred             CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            7899998  4789999999999999999999999999  9999999999999999999999999999999999864

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.69  E-value=4.8e-17  Score=126.84  Aligned_cols=74  Identities=26%  Similarity=0.266  Sum_probs=70.4

Q ss_pred             cceeEeeeCCcE-EEEE-EecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKV-FEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~-~~l~-V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|++ ++++ +++++||++||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|||+++++|||++|..
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            799999999997 6895 899999999999999999999  9999999999999999999999999999999999864

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>PTZ00044 ubiquitin; Provisional

Probab=99.69  E-value=8.9e-17  Score=123.57  Aligned_cols=74  Identities=24%  Similarity=0.330  Sum_probs=71.6

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|+++++++++++||++||++|++..|+|  +++|+|+|+|+.|+|+.+|++|+++++++||+++++.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~   74 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID--VKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR   74 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999998853

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.67  E-value=1.7e-16  Score=120.62  Aligned_cols=70  Identities=21%  Similarity=0.343  Sum_probs=67.7

Q ss_pred             eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      |+|++.+|++++++|++++||++||++|++++|+|  +++|+|+|+|++|+|+.+|++|||++++++|++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVP--PDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            68899999999999999999999999999999999  99999999999999999999999999999999865

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.67  E-value=1.5e-16  Score=122.14  Aligned_cols=73  Identities=25%  Similarity=0.476  Sum_probs=69.7

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      |+|+|+ ..|++++++|++++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|++|||++|++|+|+++++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~l~l~~~~~   74 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRLSDYSIGPNAKLNLVVRPP   74 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCHHHCCCCCCCEEEEEEcCC
Confidence            789995 89999999999999999999999999999999999999999998 99999999999999999998853

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.66  E-value=2.5e-16  Score=121.07  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=69.4

Q ss_pred             eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|++..|++++++|++++||++||++|++..|+|  +++|+|+|+|+.|+|+.+|++|||+++++|+|++++.
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~   72 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR   72 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence            68999999999999999999999999999999999  9999999999999999999999999999999998853

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.66  E-value=2.2e-16  Score=121.39  Aligned_cols=74  Identities=18%  Similarity=0.332  Sum_probs=69.3

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      |+|+|+. +++++++|++++||+++|.+|++.+|+|+++|+|+|+|++|. |+.+|++|+|++++++|+++|+.++
T Consensus         1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~-D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLE-DDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence            7899975 478999999999999999999999999999999999999998 9999999999999999999987653

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=1.9e-17  Score=134.23  Aligned_cols=74  Identities=32%  Similarity=0.447  Sum_probs=71.5

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |++++++++|++++++|+|++||.+||++|++++|+|  +++|+|+|+|++|+|++|+++||++..++||++.|+.
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~   74 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCC--HHHHHHHhcccccccCCcccccCccchhhhhhhHHHh
Confidence            6789999999999999999999999999999999999  9999999999999999999999999999999998864

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.64  E-value=8e-16  Score=118.41  Aligned_cols=74  Identities=22%  Similarity=0.305  Sum_probs=71.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCC--CCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gi--p~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|++++++|++++||.+||++|++.+|+  |  +++|+|+|+|+.|+|+.+|++||+++|++|+++++++
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~   76 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYP--PEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP   76 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCC--hhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence            789999999999999999999999999999999998  7  9999999999999999999999999999999988754

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.64  E-value=8.1e-16  Score=117.58  Aligned_cols=74  Identities=26%  Similarity=0.388  Sum_probs=71.2

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|+++.++++++.||++||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|++++|++||++++..
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~   74 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR   74 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCC--hhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999998753

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>PTZ00044 ubiquitin; Provisional

Probab=99.63  E-value=7e-16  Score=118.57  Aligned_cols=74  Identities=23%  Similarity=0.560  Sum_probs=70.8

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      |+|+| +++|+++++++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|++++|++||+.+++.+
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~~~g   75 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKLSDYKVVPGSTIHMVLQLRG   75 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcHHHcCCCCCCEEEEEEEccC
Confidence            78999 589999999999999999999999999999999999999999998 999999999999999999998765

>cd01803 Ubiquitin Ubiquitin

Probab=99.63  E-value=9.6e-16  Score=117.19  Aligned_cols=74  Identities=32%  Similarity=0.447  Sum_probs=71.4

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|+++.++|++++||++||++|++.+|+|  ++.|+|+|+|+.|+|+.+|++|+++++++||++++..
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~   74 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999999853

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.63  E-value=7.8e-16  Score=117.59  Aligned_cols=68  Identities=21%  Similarity=0.254  Sum_probs=65.6

Q ss_pred             eEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       113 ~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      -|++.+|++++++|++++||++||++|++.+|+|  +++|+|+|+|+.|+|+.+|.+|+++++++||+++
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            4688999999999999999999999999999999  9999999999999999999999999999999986

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.62  E-value=9.7e-16  Score=118.09  Aligned_cols=70  Identities=14%  Similarity=0.079  Sum_probs=67.8

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      |.|+|++..|+.+.++|++++||++||++|+++.|+|  +++|||+|+|+.|+|+.+|++||+++|++|||.
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999999  999999999999999999999999999999985

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.62  E-value=1.4e-15  Score=124.77  Aligned_cols=77  Identities=30%  Similarity=0.562  Sum_probs=73.1

Q ss_pred             CCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        31 ~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      ...|+|+| ++.|++++++|++++||++||.+|++..|+|+++|+|+|+|+.|. |+.+|++|+|++|++||+.+++.+
T Consensus        25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~stL~l~~~l~G  102 (103)
T cd01802          25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELE-DEYCLNDYNISEGCTLKLVLAMRG  102 (103)
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEecCC
Confidence            55899999 489999999999999999999999999999999999999999998 999999999999999999998765

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.61  E-value=1.8e-15  Score=114.51  Aligned_cols=72  Identities=28%  Similarity=0.343  Sum_probs=69.5

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      |+|+|++.+|+++++++++++||++||++|++..|+|  ++.|+|+|+|+.|+|+.+|++||+++|+++|++.|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP--VEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            6899999999999999999999999999999999999  99999999999999999999999999999999865

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=5.3e-16  Score=133.75  Aligned_cols=74  Identities=32%  Similarity=0.452  Sum_probs=72.2

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++++|++++++|++++||..+|++||+++|||  +++|||+|+|++|+|+++++||+|+..++|||++++.
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp--~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~   74 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCC--chhhhhhhhhcccccCCccccccccccceEEEEEEec
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999999965

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.60  E-value=1.7e-15  Score=118.04  Aligned_cols=73  Identities=15%  Similarity=0.346  Sum_probs=68.6

Q ss_pred             EEEEE-EeCCeE-EEEE-ecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           34 ILIFL-SVGGSV-IPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        34 M~I~V-t~~G~~-~~i~-V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      |+|+| ++.|++ ++++ +.+++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++|+.
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~-D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQME-DGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence            89999 588886 7895 89999999999999999999999999999999998 99999999999999999999874

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.60  E-value=3e-15  Score=116.54  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=70.2

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .|+|+|++..|+.++++|+++.||++||++|+++.|++  +++|+|+|+|+.|+|+ +|++||+++|++|||+....
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~   74 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVP--KERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVE   74 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecc
Confidence            48899999999999999999999999999999999999  9999999999999998 99999999999999987753

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=9e-16  Score=112.10  Aligned_cols=70  Identities=26%  Similarity=0.384  Sum_probs=67.7

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      |.|-|+|++|+.+.++++|+++|+.+|++|++++|+|  |.+|||+|+|++|.|+.|-++|++..||++|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCC--chhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            5688999999999999999999999999999999999  999999999999999999999999999999985

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.59  E-value=3.9e-15  Score=113.44  Aligned_cols=71  Identities=24%  Similarity=0.298  Sum_probs=67.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      +.|+|++.+|+ .+++++++.||++||++|++..|++  +++|+|+|+|+.|+|+.+|++||+++|++||+++|
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKAN--QEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            46899999997 5899999999999999999999998  99999999999999999999999999999999875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.58  E-value=4.7e-15  Score=113.34  Aligned_cols=74  Identities=30%  Similarity=0.600  Sum_probs=70.3

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      |+|+| +++|+++.+++++++||.+||.+|+...|+|++.|+|+|+|+.|. |+.+|++|++++|++||++++.++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~-d~~tl~~~~i~~g~~i~l~~~~~g   75 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLHLVLALRG   75 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEcc-CCCCHHHcCCCCCCEEEEEEEccC
Confidence            78999 478999999999999999999999999999999999999999998 899999999999999999998765

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.58  E-value=4.2e-15  Score=113.61  Aligned_cols=75  Identities=36%  Similarity=0.619  Sum_probs=70.9

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      |+|+|+ +.|+.+.+++++++||++||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|++++|++|++.+++.++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence            789995 78999999999999999999999999999999999999999998 9999999999999999999987653

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.58  E-value=3.6e-15  Score=116.41  Aligned_cols=73  Identities=23%  Similarity=0.195  Sum_probs=70.5

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEE--EECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL--ICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrL--if~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      |+|+|++.+|+++.++|+++.||++||.+|++..|+|  +++|+|  +|+|+.|+|+.+|++||+++|++||+++++
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            7899999999999999999999999999999999999  999999  899999999999999999999999999884

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.58  E-value=3.8e-15  Score=114.50  Aligned_cols=72  Identities=24%  Similarity=0.392  Sum_probs=68.1

Q ss_pred             EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        36 I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      |+| ++.|+++++++++++||++||.+|++..|+|+++|+|+|+|+.|. |+.+|++|||+++++++|.+++.+
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~~l~g   73 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNLRLRG   73 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEEEccC
Confidence            578 488999999999999999999999999999999999999999998 999999999999999999988754

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.56  E-value=1.3e-14  Score=109.30  Aligned_cols=68  Identities=31%  Similarity=0.528  Sum_probs=65.5

Q ss_pred             eeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       115 kt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      ||.+|+.++++|++++||.+||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|++++|++|+++.++
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIP--PEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTST--GGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccc--cccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            57899999999999999999999999999999  999999999999999999999999999999998874

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.56  E-value=7.7e-15  Score=113.07  Aligned_cols=71  Identities=21%  Similarity=0.183  Sum_probs=67.1

Q ss_pred             cEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        33 ~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      .|.|+| ++.|+.+.+++++++||++||.+|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|||..
T Consensus         1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~-D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCC-CCCCHHHcCCCCCCEEEEEe
Confidence            488999 478999999999999999999999999999999999999999998 99999999999999999863

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.55  E-value=1.1e-14  Score=111.40  Aligned_cols=67  Identities=25%  Similarity=0.317  Sum_probs=63.8

Q ss_pred             eeEeee-CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEE
Q 019968          112 ITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHL  180 (333)
Q Consensus       112 I~Vkt~-~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~-~tL~dy~I~~gsvIhL  180 (333)
                      |+|++. +|+++.++|++++||++||++|++.+|+|  +++|+|+|+|+.|+|+ .+|++||+++|++|||
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l   69 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL   69 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence            578999 99999999999999999999999999999  9999999999999887 6899999999999997

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.55  E-value=1.3e-14  Score=112.95  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=70.0

Q ss_pred             cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      .|+|+|+ +.|+.+++++++++||++||.+|+++.++++++|+|+|+|+.|. |+ +|++|||++|++|+|+..+.++
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~~~~~~   76 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVPTVEAG   76 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEeecccc
Confidence            4899995 78999999999999999999999999999999999999999998 77 9999999999999999877654

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.54  E-value=1e-14  Score=110.70  Aligned_cols=69  Identities=22%  Similarity=0.470  Sum_probs=65.2

Q ss_pred             EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        36 I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      |+| +..|+++++++++++||+++|.+|+++.|+|+++|+|+|+|++|. |+.+|++|||++|++||++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~-d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELR-NTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEeC
Confidence            467 478999999999999999999999999999999999999999998 999999999999999999864

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.54  E-value=1.8e-14  Score=110.92  Aligned_cols=72  Identities=19%  Similarity=0.438  Sum_probs=68.4

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCC--CCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gi--p~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      |+|+| +.+|+++++++++++||.+||.+|++.+|+  |+++|+|+|+|+.|. |+.+|++|||++|++|+++++.
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCHHHcCCCCCCEEEEEEec
Confidence            78999 589999999999999999999999999999  999999999999998 9999999999999999988764

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.53  E-value=2e-14  Score=108.77  Aligned_cols=71  Identities=28%  Similarity=0.482  Sum_probs=67.4

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      |+|+|+ +.|+++++++++++||.+||.+|++.+|+|++.|+|+|+|+.|. |+.+|++||+++|+++|++.|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence            789995 78999999999999999999999999999999999999999998 899999999999999999864

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.53  E-value=1.6e-14  Score=110.34  Aligned_cols=67  Identities=18%  Similarity=0.352  Sum_probs=63.5

Q ss_pred             EEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           37 FLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        37 ~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      .|+ ++|+++++++++++||+++|.+|++..|+|+++|+|+|+|+.|+ |+.+|.+|+|++|++||+++
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~-D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLT-DKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence            454 68999999999999999999999999999999999999999998 99999999999999999975

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.50  E-value=4.4e-14  Score=109.24  Aligned_cols=70  Identities=27%  Similarity=0.476  Sum_probs=66.2

Q ss_pred             EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        39 t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      +++|+++++++++++||++||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|++++++.++
T Consensus         4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~g~~l~v~~~~~gg   73 (76)
T cd01800           4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIK-DSNSLAYYNLANGTIIHLQLKERGG   73 (76)
T ss_pred             ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence            468999999999999999999999999999999999999999998 8999999999999999999987653

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=4.2e-15  Score=120.63  Aligned_cols=75  Identities=36%  Similarity=0.622  Sum_probs=71.3

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      |++++ ++.|++.+++++|++||..+|.+|+...|+|+++|+|+|+|++|+ |+.|+++|||+..+|+|+++++.++
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LE-D~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccc-cCCcccccCccchhhhhhhHHHhcC
Confidence            45666 899999999999999999999999999999999999999999998 9999999999999999999998876

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.49  E-value=1e-13  Score=104.38  Aligned_cols=66  Identities=30%  Similarity=0.661  Sum_probs=63.6

Q ss_pred             eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ++|+.++++|++++||.+||.+|+...++|++.|+|+|+|+.|. |+.+|.+|||++|++|+|..++
T Consensus         3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~-d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELD-DDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEES-TTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeeccc-CcCcHHHcCCCCCCEEEEEEec
Confidence            57899999999999999999999999999999999999999997 9999999999999999998875

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.48  E-value=8.8e-14  Score=107.54  Aligned_cols=67  Identities=19%  Similarity=0.295  Sum_probs=64.1

Q ss_pred             eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ++|++++++|++++||++||++|+..+|+|  +++|+|+|+|+.|+|+++|++|++++|++||++++..
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~   71 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKER   71 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence            478999999999999999999999999999  9999999999999999999999999999999999864

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.48  E-value=8.1e-14  Score=108.90  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             cceeEeeeCCcEE--EEEEecCCchHHHHHHHHHhcC-CCCCCCceEEEECCeecCCCCcccccC--CCCCCEEEEEe
Q 019968          110 QAITVTTVCGKVF--EFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDIC--KRNEAVIHLLV  182 (333)
Q Consensus       110 m~I~Vkt~~Gk~~--~l~V~~sdTV~~LK~~I~~~~G-ip~~~~~QrLif~Gk~LeD~~tL~dy~--I~~gsvIhLv~  182 (333)
                      +.|.||+.+|+++  .+++++++||.+||++|++..+ .| ++++|||||+||.|.|+.+|++|+  +.++.+||||.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCC-ChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            5689999999984  4555899999999999999875 32 279999999999999999999996  99999999986

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.47  E-value=8.9e-14  Score=108.56  Aligned_cols=72  Identities=19%  Similarity=0.268  Sum_probs=68.3

Q ss_pred             cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEE--EECCeecccCCccccccccccccceeeeee
Q 019968           33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKL--VFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~L--if~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      .|+|+|+ +.|+++.+++++++||++||.+|++..|+|+++|+|  +|+|+.|. |+.+|++|||++|++|+|+++
T Consensus         2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL~~~gi~~gs~l~l~~~   76 (80)
T cd01792           2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPLVSQGLGPGSTVLLVVQ   76 (80)
T ss_pred             ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence            4899994 789999999999999999999999999999999999  89999998 999999999999999999987

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.47  E-value=9.8e-14  Score=105.70  Aligned_cols=70  Identities=19%  Similarity=0.290  Sum_probs=64.6

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      |+|+|+ ..|+ .++++++++||++||.+|++..|+++.+|+|+|+|+.|. |+.+|++||+++|++||+++|
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~-d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEEC
Confidence            468884 7776 589999999999999999999999999999999999998 999999999999999999875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.47  E-value=1.3e-13  Score=106.46  Aligned_cols=69  Identities=16%  Similarity=0.370  Sum_probs=65.7

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE---CCeecccCCccccccccccccceeee
Q 019968           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif---~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      |.|.|++.|+++++++++++||++||++|++.+|+|+++|+|+|   .|+.|. |+.+|++|+|++|+.|+|+
T Consensus         1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~-D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE-DDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC-CCcCHHHcCCCCCCEEEEE
Confidence            57889999999999999999999999999999999999999996   899998 9999999999999999886

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.46  E-value=1.7e-13  Score=103.62  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=66.1

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      +.|.|++. |+.++++++++.||++||++|++.+|+|  ++.|+|+|+|+.|+|+.+|++||+++|++|+++.
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            46889986 9999999999999999999999999999  9999999999999999999999999999999864

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.46  E-value=1.7e-13  Score=103.63  Aligned_cols=70  Identities=21%  Similarity=0.369  Sum_probs=66.2

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      |+|+|+..|+.+++++++++||++||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+++.
T Consensus         1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~-d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERD-DAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccC-ccCcHHHcCCCCCCEEEEec
Confidence            57889888999999999999999999999999999999999999999998 89999999999999998863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=5.3e-14  Score=121.40  Aligned_cols=75  Identities=35%  Similarity=0.620  Sum_probs=72.1

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      |+||| ++.++++++++.+++||..+|++|+...|||+++|+|+|.|++|+ |+++|+||+|+..+++||+++++++
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe-dgrtlSDY~Iqkestl~l~l~l~Gg   76 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   76 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc-cCCccccccccccceEEEEEEecCC
Confidence            78999 689999999999999999999999999999999999999999999 9999999999999999999998765

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.43  E-value=2.5e-13  Score=103.85  Aligned_cols=67  Identities=24%  Similarity=0.403  Sum_probs=61.4

Q ss_pred             EEEE-e-CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCC-ccccccccccccceeee
Q 019968           36 IFLS-V-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV  103 (333)
Q Consensus        36 I~Vt-~-~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~-~tL~dygI~~gstV~Lv  103 (333)
                      |+|+ . +|+++.+++++++||++||.+|++.+|+|+++|+|+|+|+.|. |+ .+|++|||++|++|+|.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~-D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELV-DNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEcc-CCcccHHHcCCCCCCEEEEe
Confidence            4563 5 8899999999999999999999999999999999999999998 65 78999999999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=9.3e-14  Score=101.60  Aligned_cols=69  Identities=28%  Similarity=0.587  Sum_probs=66.1

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      |.|.| +++|+.+.++++|+|+|..+|.+|+++.|+||.+|+|+|.|+++. |+.+-++|++.-|+++|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~-DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMN-DDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccc-ccccHHHhhhccceeEeeC
Confidence            67888 699999999999999999999999999999999999999999998 9999999999999999984

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.40  E-value=1.2e-12  Score=103.88  Aligned_cols=77  Identities=13%  Similarity=0.265  Sum_probs=73.1

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +..|.|.|++.+|+...++|.+++++..||.+++++.|+|  +++|+|+|+|+.|+++.|+.+|+++++++|++++++.
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~   85 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT   85 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC--ccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence            4568899999999999999999999999999999999999  9999999999999999999999999999999998753

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.34  E-value=4.9e-12  Score=100.43  Aligned_cols=79  Identities=15%  Similarity=0.348  Sum_probs=73.9

Q ss_pred             CCCCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        29 ~~~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      .....|+|+| ...|+.+.++|.+++|+..||.+++++.|+|+++|+|+|+|+.|. ++.|+.+|++.+|++|++++++.
T Consensus         7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~-~~~T~~~l~m~d~d~I~v~l~l~   85 (87)
T cd01763           7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR-DNQTPDDLGMEDGDEIEVMLEQT   85 (87)
T ss_pred             CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC-CCCCHHHcCCCCCCEEEEEEecc
Confidence            3577899999 478999999999999999999999999999999999999999998 99999999999999999998875


Q ss_pred             c
Q 019968          108 D  108 (333)
Q Consensus       108 d  108 (333)
                      +
T Consensus        86 G   86 (87)
T cd01763          86 G   86 (87)
T ss_pred             c
Confidence            4

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.34  E-value=2.2e-12  Score=127.64  Aligned_cols=74  Identities=20%  Similarity=0.327  Sum_probs=71.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC---CCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G---ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+||+..|+++.++|++++||.+||++|+...|   ++  +++|+|+|+|+.|+|+.+|++|+|+++++|++++++.
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~   77 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP   77 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence            78999999999999999999999999999999998   88  9999999999999999999999999999999998864

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.34  E-value=2.3e-12  Score=99.85  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=61.9

Q ss_pred             EEEE--E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccc-cccceeeee
Q 019968           35 LIFL--S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-DGNVLHLVL  104 (333)
Q Consensus        35 ~I~V--t-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~-~gstV~Lv~  104 (333)
                      .++|  + ..|.++++++.+++||++||.+|+.++|+|+++|+| |+|+.|.+|+.+|++||++ +|+++||.+
T Consensus         2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            4566  3 467899999999999999999999999999999999 9999997577999999998 889999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.32  E-value=3.9e-12  Score=93.35  Aligned_cols=64  Identities=27%  Similarity=0.343  Sum_probs=60.6

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEA  176 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gs  176 (333)
                      |+|+|++.+ +.+.++|+++.||++||++|++.+|+|  ++.|+|+|+|+.|.|+.+|++|++.+|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIP--VEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            679999988 789999999999999999999999999  9999999999999999999999999875

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.32  E-value=2.8e-12  Score=100.26  Aligned_cols=71  Identities=14%  Similarity=0.270  Sum_probs=61.7

Q ss_pred             cEEEEEE-eCCeE--EEEEecCCCCHHHHHHHHHHhhC--CCCcceEEEECCeecccCCccccccc--cccccceeeee
Q 019968           33 SILIFLS-VGGSV--IPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYG--LADGNVLHLVL  104 (333)
Q Consensus        33 ~M~I~Vt-~~G~~--~~i~V~~sdTV~~LK~kI~~~~g--ip~~~Q~Lif~G~~L~~D~~tL~dyg--I~~gstV~Lv~  104 (333)
                      .|.|+|+ .+++.  +++++++++||.+||.+|++..+  .++++|+|+|+|+.|. |+.+|++|.  +.+|.++||+.
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLk-D~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLP-DHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeecc-chhhHHHHhhcccCCceEEEEe
Confidence            3788895 67877  55566899999999999999874  4589999999999998 999999996  99999999974

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.31  E-value=5.9e-12  Score=97.20  Aligned_cols=69  Identities=19%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CCeecCCCCcccccCCCCCCEEEEEe
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      .|.|+ ..|+++.++|++++||++||++|++.+|+|  +++|+|+|   .|+.|.|+.+|++|++.+|+.|+|+-
T Consensus         2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG   73 (74)
T cd01813           2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG   73 (74)
T ss_pred             EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence            46664 478899999999999999999999999999  99999996   99999999999999999999999873

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.29  E-value=3.5e-12  Score=98.61  Aligned_cols=54  Identities=28%  Similarity=0.273  Sum_probs=48.9

Q ss_pred             cCCchHHHHHHHHHhc--CCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          128 RGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       128 ~sdTV~~LK~~I~~~~--Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      .++||.+||++|+++.  |++ ++++|||+|+|+.|+|++||++|||++|++|||+.
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            4889999999999995  453 28999999999999999999999999999999975

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.28  E-value=9.7e-12  Score=91.21  Aligned_cols=64  Identities=27%  Similarity=0.532  Sum_probs=59.3

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCcccccccccccc
Q 019968           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN   98 (333)
Q Consensus        34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gs   98 (333)
                      |+|+|+..++.+.+++++++||++||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|||++|+
T Consensus         1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence            68999654478999999999999999999999999999999999999998 88999999999875

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.27  E-value=8.5e-12  Score=96.64  Aligned_cols=65  Identities=17%  Similarity=0.066  Sum_probs=59.3

Q ss_pred             eeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecC-CCCcccccCCC-CCCEEEEEe
Q 019968          115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKR-NEAVIHLLV  182 (333)
Q Consensus       115 kt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~Le-D~~tL~dy~I~-~gsvIhLv~  182 (333)
                      +..+|++++++|++++||++||++|++++|+|  +++|+| |+|+.|. |+++|++||++ +|+++||.+
T Consensus         8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             cccCCCeEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            34578899999999999999999999999999  999999 9999995 77999999998 889999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.24  E-value=9.4e-12  Score=102.73  Aligned_cols=75  Identities=15%  Similarity=0.224  Sum_probs=61.5

Q ss_pred             ceeEeeeCCcEE-EEEEecCCchHHHHHHHHHhc-----CCCCCCCceEEEECCeecCCCCcccccC------CCCCCEE
Q 019968          111 AITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKG-----REFVDLKNQELICDGEELEDQRLITDIC------KRNEAVI  178 (333)
Q Consensus       111 ~I~Vkt~~Gk~~-~l~V~~sdTV~~LK~~I~~~~-----Gip~~~~~QrLif~Gk~LeD~~tL~dy~------I~~gsvI  178 (333)
                      .|-+|..+|..+ ++.+.+++||++||++|++.+     |+|.++++|+|||+|+.|+|++||++|+      +....|+
T Consensus         6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm   85 (113)
T cd01814           6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM   85 (113)
T ss_pred             EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence            344455566443 677889999999999999544     4555599999999999999999999999      7778999


Q ss_pred             EEEeecC
Q 019968          179 HLLVRKS  185 (333)
Q Consensus       179 hLv~r~~  185 (333)
                      |+++|.+
T Consensus        86 Hvvlr~~   92 (113)
T cd01814          86 HVVVQPP   92 (113)
T ss_pred             EEEecCC
Confidence            9999964

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.17  E-value=4.2e-11  Score=118.55  Aligned_cols=73  Identities=16%  Similarity=0.433  Sum_probs=68.7

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC---CCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~g---ip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      |+|+| ++.|+++.++|++++||.+||.+|+...|   +++++|+|+|+|+.|. |+.+|++|+|+++++|+++++..
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~-Dd~tL~dy~I~e~~~Ivvmv~k~   77 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILS-DDKTVREYKIKEKDFVVVMVSKP   77 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEeccC
Confidence            78999 58999999999999999999999999998   9999999999999998 99999999999999999887653

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.16  E-value=3.1e-11  Score=93.34  Aligned_cols=53  Identities=19%  Similarity=0.345  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHHHhh--CCC-CcceEEEECCeecccCCccccccccccccceeeee
Q 019968           51 ESDSIASVKLRIQSYN--GFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        51 ~sdTV~~LK~kI~~~~--gip-~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      .++||.+||.+|+++.  |++ +++|+|+|+|+.|. |+.+|++|||++|++|||+.
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~-D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLK-DDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCC-CCCcHHHcCCCCCCEEEEEe
Confidence            4789999999999995  575 99999999999998 99999999999999999974

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.11  E-value=1.1e-10  Score=94.12  Aligned_cols=64  Identities=16%  Similarity=0.194  Sum_probs=59.7

Q ss_pred             eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        43 ~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ...++.|++++||.+||.+|.+.+++++.+|+|+|+|+.|.+|.+||++|||..|++|+|.++.
T Consensus        15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            3567889999999999999999999999999999999999988999999999999999998754

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.10  E-value=2.6e-10  Score=84.62  Aligned_cols=67  Identities=31%  Similarity=0.469  Sum_probs=63.0

Q ss_pred             EeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       114 Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      |+..+|+.+.+++.++.||.+||.+|+...|+|  ++.|+|+|+|+.|+|+.+|.+|++.++++|++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVP--PEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            566789999999999999999999999999999  9999999999999999999999999999999864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.07  E-value=2.8e-10  Score=91.89  Aligned_cols=63  Identities=22%  Similarity=0.146  Sum_probs=58.4

Q ss_pred             EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeec-CCCCcccccCCCCCCEEEEEeecC
Q 019968          121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL-EDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~L-eD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ..++.|++++||.+||.+|+.+++++  |.+|+|+|+|+.| +|.+||++||+..+++|+|.+..+
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP   79 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVA--PFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP   79 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCC--cccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence            56788999999999999999999999  9999999999999 568899999999999999988643

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.04  E-value=3.2e-10  Score=108.60  Aligned_cols=74  Identities=23%  Similarity=0.309  Sum_probs=71.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC--CCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR--EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G--ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |.|+|||+.|.+|+++|.|++||.++|.+|+...|  .|  ..+|+|||+|+.|.|+.++.+|++.+++.|.+++.++
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYP--AEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCc--hhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            78999999999999999999999999999999999  77  9999999999999999999999999999999998865

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.04  E-value=1e-09  Score=83.36  Aligned_cols=71  Identities=21%  Similarity=0.290  Sum_probs=65.2

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCC-CceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL-KNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~-~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      |+|.|++.+|+.+.+.|.+++++..|++..+++.|++  + +..+|+|+|++|.++.|+++|++++|++|++++
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIP--PEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTT--T-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCC--ccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            5788999999999999999999999999999999999  8 999999999999999999999999999999864

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.00  E-value=4e-10  Score=112.89  Aligned_cols=75  Identities=23%  Similarity=0.280  Sum_probs=70.4

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ..+.|.|||.++ ++.+.|....||.+||+.|...++++  +++++|||+||.|.|+.||..|||++|.|||||.+..
T Consensus        14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAP--PDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCC--hhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            347799999888 78999999999999999999999999  9999999999999999999999999999999998854

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.99  E-value=3.1e-09  Score=78.36  Aligned_cols=72  Identities=29%  Similarity=0.400  Sum_probs=68.0

Q ss_pred             eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +++.+..|+++.+++.++++|..+|.+|+...|++  +.+|++.+.|+.|+|+.++.+|+|..+++++++.+..
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCC--CeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence            56788999999999999999999999999999999  9999999999999999999999999999999988753

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.97  E-value=2.9e-09  Score=84.11  Aligned_cols=71  Identities=17%  Similarity=0.304  Sum_probs=60.8

Q ss_pred             EEEEEEeC--CeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE-ECCe-----ecccCCccccccccccccceeeee
Q 019968           34 ILIFLSVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEGR-----ELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        34 M~I~Vt~~--G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li-f~G~-----~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      +.|+|+.+  ....+..+.++.||.+||.+++..+|+++..|+|. |.|+     .|.+|+.+|.+||+++|++||++-
T Consensus         2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            45666543  55566679999999999999999999999999995 7887     587799999999999999999874

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=98.96  E-value=1.6e-09  Score=80.42  Aligned_cols=64  Identities=33%  Similarity=0.658  Sum_probs=60.2

Q ss_pred             eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      .+|+.+.+++.+++||.+||.+|+..+|+|++.|+|+|+|+.|. |+.+|.+|++.+|++|++..
T Consensus         5 ~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~-d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           5 LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILK-DDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             cCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCC-CcCCHHHCCCCCCCEEEEEE
Confidence            46889999999999999999999999999999999999999997 99999999999999998764

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.94  E-value=1.3e-09  Score=109.17  Aligned_cols=75  Identities=23%  Similarity=0.382  Sum_probs=69.5

Q ss_pred             CcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        32 ~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      ..++|+||-.+..+.+.|..+.||.+||..|...++.++++++|+|+||.|+ |+.||..|||+||.||||+.+..
T Consensus        14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence            5689999755559999999999999999999999999999999999999999 99999999999999999998753

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=98.92  E-value=1.1e-09  Score=90.57  Aligned_cols=76  Identities=21%  Similarity=0.225  Sum_probs=62.4

Q ss_pred             CcEEEEEE-eCC-eEEEEEecCCCCHHHHHHHHHHh-----hCCC--CcceEEEECCeecccCCccccccc------ccc
Q 019968           32 DSILIFLS-VGG-SVIPMRVMESDSIASVKLRIQSY-----NGFF--VKKQKLVFEGRELARSNSRVRDYG------LAD   96 (333)
Q Consensus        32 ~~M~I~Vt-~~G-~~~~i~V~~sdTV~~LK~kI~~~-----~gip--~~~Q~Lif~G~~L~~D~~tL~dyg------I~~   96 (333)
                      +.+.|.++ .+| ..=+..+.+++||++||.+|++.     .++|  +++|+|+|+|+.|+ |+.||++|+      +..
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe-D~~TL~d~~~p~g~~~~~   81 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE-NSKTVGECRSPVGDIAGG   81 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC-CCCcHHHhCCcccccCCC
Confidence            45566665 355 44567888999999999999944     4555  99999999999998 999999999      677


Q ss_pred             ccceeeeeeccc
Q 019968           97 GNVLHLVLRLSD  108 (333)
Q Consensus        97 gstV~Lv~rlsd  108 (333)
                      ..|+|+++|++.
T Consensus        82 ~~TmHvvlr~~~   93 (113)
T cd01814          82 VITMHVVVQPPL   93 (113)
T ss_pred             ceEEEEEecCCC
Confidence            789999998753

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.89  E-value=6e-09  Score=79.07  Aligned_cols=70  Identities=21%  Similarity=0.459  Sum_probs=63.5

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCC-cceEEEECCeecccCCccccccccccccceeeee
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~-~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      |+|+|+ .+|+.+.+.|.+++++..|+.+.+++.|+|+ +..+|+|+|+.|. ++.|+++||+.+|++|++.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~-~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLD-PNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcC-CCCCHHHCCCCCCCEEEEEC
Confidence            788895 6789999999999999999999999999999 9999999999998 89999999999999998863

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.83  E-value=4.3e-09  Score=100.98  Aligned_cols=73  Identities=19%  Similarity=0.439  Sum_probs=68.4

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC--CCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~g--ip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      |+|+| ++.|.+|++++.|++||.++|.+|+...|  .|+.+|+|+|+|+.|. |+.++.+|+|.++.-|.+++..+
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~-D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILK-DETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceecc-CCcchhhhccccCceEEEEEecC
Confidence            78999 59999999999999999999999999999  9999999999999998 99999999999998887777654

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.72  E-value=5.5e-08  Score=71.57  Aligned_cols=71  Identities=38%  Similarity=0.700  Sum_probs=65.9

Q ss_pred             EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        36 I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      +++ +..|+++.+++.++++|..+|.+|+...|++.++|++.+.|+.|+ |+.++.+|+|..++++++..++.
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEecC
Confidence            345 588999999999999999999999999999999999999999998 88999999999999999987764

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.71  E-value=6.5e-08  Score=76.52  Aligned_cols=71  Identities=20%  Similarity=0.425  Sum_probs=58.5

Q ss_pred             EEEEEEeCC---eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC----C---eecccCCccccccccccccceeee
Q 019968           34 ILIFLSVGG---SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE----G---RELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        34 M~I~Vt~~G---~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~----G---~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      +.|+|+...   ...+..+.++.||++||.+|+..+|+|++.|+|.+.    +   ..+.+|+.+|.+||+++|.+||+.
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            567786433   489999999999999999999999999999999875    1   236668999999999999999886


Q ss_pred             e
Q 019968          104 L  104 (333)
Q Consensus       104 ~  104 (333)
                      -
T Consensus        82 D   82 (87)
T PF14560_consen   82 D   82 (87)
T ss_dssp             E
T ss_pred             e
Confidence            4

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.71  E-value=6.4e-08  Score=76.40  Aligned_cols=63  Identities=21%  Similarity=0.265  Sum_probs=55.0

Q ss_pred             CcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE-ECCe-----ec-CCCCcccccCCCCCCEEEEEee
Q 019968          119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDGE-----EL-EDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       119 Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi-f~Gk-----~L-eD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      ......++.++.||.+||++++..+|++  +..|+|. |.|+     +| +|..+|++|++++|..||++-.
T Consensus        12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~   81 (84)
T cd01789          12 SFSFEKKYSRGLTIAELKKKLELVVGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV   81 (84)
T ss_pred             ceeeeEecCCCCcHHHHHHHHHHHHCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence            3445667999999999999999999999  9999995 8888     56 6788999999999999999753

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.65  E-value=5.8e-08  Score=80.29  Aligned_cols=73  Identities=18%  Similarity=0.204  Sum_probs=64.1

Q ss_pred             EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCcccccccc-------ccccceeeeeecc
Q 019968           35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-------ADGNVLHLVLRLS  107 (333)
Q Consensus        35 ~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI-------~~gstV~Lv~rls  107 (333)
                      -+.|+....++.+++.++.||.+||++|+.....|++.|+|+..+..|+ |+.||++||+       +..++|-|.+|..
T Consensus         4 FlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLe-D~kTL~d~g~t~~~akaq~pA~vgLa~r~~   82 (119)
T cd01788           4 FLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLD-DGKTLGDCGFTSQTARPQAPATVGLAFRSS   82 (119)
T ss_pred             EEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeec-ccccHHHcCccccccccCCCCeEEEEEecC
Confidence            3444778888999999999999999999999999999999996677787 9999999999       7788988888754


Q ss_pred             c
Q 019968          108 D  108 (333)
Q Consensus       108 d  108 (333)
                      +
T Consensus        83 d   83 (119)
T cd01788          83 D   83 (119)
T ss_pred             C
Confidence            4

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.59  E-value=3.6e-07  Score=76.03  Aligned_cols=74  Identities=24%  Similarity=0.319  Sum_probs=56.0

Q ss_pred             eeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcC-----CCCCCCceEEEECCeecCCCCcccccCCCCCC------EEE
Q 019968          112 ITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGR-----EFVDLKNQELICDGEELEDQRLITDICKRNEA------VIH  179 (333)
Q Consensus       112 I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~G-----ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gs------vIh  179 (333)
                      |.++..+|+ ..++..++++||++||++|...+-     .|..+...||||.||.|+|+.+|++|.+..+.      ++|
T Consensus         5 lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmH   84 (111)
T PF13881_consen    5 LKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMH   84 (111)
T ss_dssp             EEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEE
T ss_pred             EEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEE
Confidence            444556888 788999999999999999998652     24357889999999999999999999887665      799


Q ss_pred             EEeecC
Q 019968          180 LLVRKS  185 (333)
Q Consensus       180 Lv~r~~  185 (333)
                      |+++..
T Consensus        85 lvvrp~   90 (111)
T PF13881_consen   85 LVVRPN   90 (111)
T ss_dssp             EEE-SS
T ss_pred             EEecCC
Confidence            999865

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=1.9e-07  Score=100.38  Aligned_cols=71  Identities=23%  Similarity=0.291  Sum_probs=68.8

Q ss_pred             eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +.|||++.++.+|-+...+||.++|..|.++..|+  .+.|||||.|+.|.|++++.+|+| +|.+|||+-|.+
T Consensus         5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp   75 (1143)
T KOG4248|consen    5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP   75 (1143)
T ss_pred             eeeeecccceeEEEechHHHHHHHHHHHHHhcccc--cccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence            78999999999999999999999999999999999  999999999999999999999999 999999999864

>PLN02560 enoyl-CoA reductase

Probab=98.44  E-value=4.5e-07  Score=87.84  Aligned_cols=70  Identities=20%  Similarity=0.327  Sum_probs=61.8

Q ss_pred             cceeEeeeCCcEE---EEEEecCCchHHHHHHHHHhcCC-CCCCCceEEEEC---C----eecCCCCcccccCCCCCCEE
Q 019968          110 QAITVTTVCGKVF---EFHVERGRNVGYVKQQIAKKGRE-FVDLKNQELICD---G----EELEDQRLITDICKRNEAVI  178 (333)
Q Consensus       110 m~I~Vkt~~Gk~~---~l~V~~sdTV~~LK~~I~~~~Gi-p~~~~~QrLif~---G----k~LeD~~tL~dy~I~~gsvI  178 (333)
                      |.|.|++.+|+.+   +++++++.||++||.+|+++.++ +  +++|||.+.   |    +.|+|+.+|+|||+++|++|
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~--~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstL   78 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYY--PSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTV   78 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCC--hhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceE
Confidence            6788988889887   79999999999999999999886 6  899999983   4    37899999999999999998


Q ss_pred             EEE
Q 019968          179 HLL  181 (333)
Q Consensus       179 hLv  181 (333)
                      ++-
T Consensus        79 y~k   81 (308)
T PLN02560         79 VFK   81 (308)
T ss_pred             EEE
Confidence            873

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.40  E-value=1.2e-06  Score=69.31  Aligned_cols=71  Identities=18%  Similarity=0.197  Sum_probs=55.5

Q ss_pred             ceeEeeeCC--cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC----C---eec-CCCCcccccCCCCCCEEEE
Q 019968          111 AITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD----G---EEL-EDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       111 ~I~Vkt~~G--k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~----G---k~L-eD~~tL~dy~I~~gsvIhL  180 (333)
                      .|+|.....  .....+++++.||.+||.+|+..+|+|  ++.|+|.+.    +   ..+ +|..+|.+|++++|.+||+
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V   80 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV   80 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC--cccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence            345544333  478899999999999999999999999  999999874    2   224 5689999999999999999


Q ss_pred             Eee
Q 019968          181 LVR  183 (333)
Q Consensus       181 v~r  183 (333)
                      .-.
T Consensus        81 ~D~   83 (87)
T PF14560_consen   81 VDT   83 (87)
T ss_dssp             EE-
T ss_pred             EeC
Confidence            754

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.36  E-value=1.1e-06  Score=72.77  Aligned_cols=74  Identities=18%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             cceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCC-------CCCCEEEEE
Q 019968          110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-------RNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I-------~~gsvIhLv  181 (333)
                      |.+|++-...| ++.+++.++.||.+||++|+.-...|  |++|+|+-.+..|+|++||+|||+       +..+++-|.
T Consensus         1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa   78 (119)
T cd01788           1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLA   78 (119)
T ss_pred             CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCC--hhHheeecCceeecccccHHHcCccccccccCCCCeEEEE
Confidence            34555444444 56789999999999999999999999  999999977788999999999999       668899998


Q ss_pred             eecC
Q 019968          182 VRKS  185 (333)
Q Consensus       182 ~r~~  185 (333)
                      +|..
T Consensus        79 ~r~~   82 (119)
T cd01788          79 FRSS   82 (119)
T ss_pred             EecC
Confidence            8853

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4.8e-07  Score=97.33  Aligned_cols=72  Identities=25%  Similarity=0.448  Sum_probs=68.1

Q ss_pred             EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        35 ~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      .|.| +++.++.++.|...+||.+||..|.++.+|+...|+|+|.|+.|. |++++++|+| +|.+|||+.|++.
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~-~~k~vq~~~v-dgk~~hlverppp   76 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQ-DDKKVQEYNV-DGKVIHLVERPPP   76 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeec-cchhhhhccC-CCeEEEeeccCCC
Confidence            3777 599999999999999999999999999999999999999999998 9999999999 9999999999754

>PLN02560 enoyl-CoA reductase

Probab=98.27  E-value=1.5e-06  Score=84.36  Aligned_cols=68  Identities=25%  Similarity=0.462  Sum_probs=58.5

Q ss_pred             EEEEEE-eCCeEE---EEEecCCCCHHHHHHHHHHhhCC-CCcceEEEEC---C----eecccCCcccccccccccccee
Q 019968           34 ILIFLS-VGGSVI---PMRVMESDSIASVKLRIQSYNGF-FVKKQKLVFE---G----RELARSNSRVRDYGLADGNVLH  101 (333)
Q Consensus        34 M~I~Vt-~~G~~~---~i~V~~sdTV~~LK~kI~~~~gi-p~~~Q~Lif~---G----~~L~~D~~tL~dygI~~gstV~  101 (333)
                      |+|.|+ .+|+.+   ++++++++||++||.+|+++.++ ++++|+|.+.   |    ..|. |+.+|++||+++|++++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy   79 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVV   79 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEE
Confidence            678885 567776   79999999999999999999986 8999999983   3    3677 88999999999999876


Q ss_pred             e
Q 019968          102 L  102 (333)
Q Consensus       102 L  102 (333)
                      +
T Consensus        80 ~   80 (308)
T PLN02560         80 F   80 (308)
T ss_pred             E
Confidence            5

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.16  E-value=9.9e-06  Score=56.13  Aligned_cols=64  Identities=27%  Similarity=0.296  Sum_probs=58.6

Q ss_pred             eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      .+|....+.+.+..|+++||.+|.++.|.+  +..|.|.++|..+.+...+.+|++.++++|++..
T Consensus         5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           5 NDGKTVELLVPSGTTVADLKEKLAKKLGLP--PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHHHHCcC--hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            367888899999999999999999999988  9999999999999988888899999999999864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.15  E-value=1.1e-05  Score=67.19  Aligned_cols=74  Identities=30%  Similarity=0.426  Sum_probs=54.7

Q ss_pred             cEEEEEE-eCCe-EEEEEecCCCCHHHHHHHHHHhh-------CCCCcceEEEECCeecccCCcccccccccccc-----
Q 019968           33 SILIFLS-VGGS-VIPMRVMESDSIASVKLRIQSYN-------GFFVKKQKLVFEGRELARSNSRVRDYGLADGN-----   98 (333)
Q Consensus        33 ~M~I~Vt-~~G~-~~~i~V~~sdTV~~LK~kI~~~~-------gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gs-----   98 (333)
                      .+.|.+. .+|. ..++..++++||++||..|...-       -..++..||+|.|+.|+ |+.+|++|++..|.     
T Consensus         2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~-d~~tL~~~~~~~~~~~~~~   80 (111)
T PF13881_consen    2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILE-DNKTLSDCRLPSGETPGGP   80 (111)
T ss_dssp             SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--
T ss_pred             eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecC-CcCcHHHhCCCCCCCCCCC
Confidence            4556664 5887 89999999999999999999741       12356789999999998 99999999987765     


Q ss_pred             -ceeeeeecc
Q 019968           99 -VLHLVLRLS  107 (333)
Q Consensus        99 -tV~Lv~rls  107 (333)
                       ++||++++.
T Consensus        81 ~vmHlvvrp~   90 (111)
T PF13881_consen   81 TVMHLVVRPN   90 (111)
T ss_dssp             EEEEEEE-SS
T ss_pred             EEEEEEecCC
Confidence             678887764

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.10  E-value=6.2e-06  Score=64.71  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             CcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC---eec-ccCCccccccccccccceeee
Q 019968           32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---REL-ARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        32 ~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G---~~L-~~D~~tL~dygI~~gstV~Lv  103 (333)
                      .+|.|.|+.....+.+++++++|+.+||.+|++..++|...|.|+.+-   ..| ..++.+|+++||++|+.|+|.
T Consensus         3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            478889976667888999999999999999999999999999986542   345 347899999999999999874

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=97.99  E-value=1.1e-05  Score=62.37  Aligned_cols=52  Identities=25%  Similarity=0.363  Sum_probs=46.0

Q ss_pred             cCCCCHHHHHHHHHHhhC-CCCcceEEE--ECCeecccCCccccccccccccceee
Q 019968           50 MESDSIASVKLRIQSYNG-FFVKKQKLV--FEGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        50 ~~sdTV~~LK~kI~~~~g-ip~~~Q~Li--f~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      .++.||.+||..|+...+ +++++|+|.  +.|+.|. |+.+|.+||+.+|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEE
Confidence            488999999999999876 579999985  7899998 889999999999998765

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.97  E-value=3.3e-05  Score=59.41  Aligned_cols=71  Identities=18%  Similarity=0.142  Sum_probs=60.5

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CC-e-ecCCCCcccccCCCCCCEEEEEee
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DG-E-ELEDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~G-k-~LeD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      ++++|+-..+...++.|+|..+|..+|++|....|++   ..|||.|   +| + .|.+..+|++|||-.+-.|.|+-.
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~---g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT   76 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS---GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET   76 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc---cceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence            4678888888899999999999999999999999986   7999999   33 2 358899999999987777777654

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.96  E-value=2.7e-05  Score=53.92  Aligned_cols=63  Identities=29%  Similarity=0.494  Sum_probs=57.3

Q ss_pred             CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        41 ~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      ++....+.+.++.|+.++|.++..+.|.++..+.|+++|..+. +...+.+|++.+++++++..
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence            5788889999999999999999999999999999999999998 77777899999999998764

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.94  E-value=1.4e-05  Score=62.69  Aligned_cols=70  Identities=17%  Similarity=0.211  Sum_probs=43.4

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CCeec--CCCCcccccCCCCCCEEEE
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEEL--EDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~Gk~L--eD~~tL~dy~I~~gsvIhL  180 (333)
                      +.|-|-|++.+| .+.+++++++|+.+||++|++..++|  ...|.|..   ...++  .++.+|+++|++.|+.|+|
T Consensus         3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL   77 (80)
T PF11543_consen    3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL   77 (80)
T ss_dssp             ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS-----TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred             ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCC--CcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence            456778888776 57889999999999999999999999  78888753   22345  4688999999999999987

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=97.90  E-value=2.9e-05  Score=59.98  Aligned_cols=52  Identities=21%  Similarity=0.261  Sum_probs=46.4

Q ss_pred             ecCCchHHHHHHHHHhcC-CCCCCCceEEE--ECCeecCCCCcccccCCCCCCEEEE
Q 019968          127 ERGRNVGYVKQQIAKKGR-EFVDLKNQELI--CDGEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       127 ~~sdTV~~LK~~I~~~~G-ip~~~~~QrLi--f~Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      .++.||.+||..|+...+ ++  ++.|||.  +.|+.|.|+.+|.+||+.+|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLT--VNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCC--cceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            478899999999999876 46  8999995  7999999999999999999999886

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.75  E-value=9.5e-05  Score=56.93  Aligned_cols=71  Identities=27%  Similarity=0.343  Sum_probs=59.6

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC---C-eecccCCccccccccccccceeeeee
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---G-RELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~---G-~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      ++|+|+ .+...+++.|+|..+|..+|.+|....|++- .|+|.|.   | ++|-++.++|++|||..+..|.|...
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT   76 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET   76 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence            478885 6668899999999999999999999999986 8999985   3 34444999999999998888776654

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=4.3e-05  Score=73.44  Aligned_cols=63  Identities=16%  Similarity=0.271  Sum_probs=58.2

Q ss_pred             cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE-eec
Q 019968          120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL-VRK  184 (333)
Q Consensus       120 k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv-~r~  184 (333)
                      ..++++|+.+.+|.+||+-++...|+|  +++-++||+||+|.|+.++..+.+...+++|++ +|+
T Consensus        14 h~l~v~v~~~t~I~~lke~Vak~~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen   14 HGLPVEVDSDTSIFQLKEVVAKRQGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             CceeEEEecCCCHHHHHHHHHHhhCCC--hhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence            457899999999999999999999999  999999999999999999999999999999998 444

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=7.9e-05  Score=74.98  Aligned_cols=72  Identities=13%  Similarity=0.215  Sum_probs=67.0

Q ss_pred             EEEEEEeCCeEEEEE-ecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           34 ILIFLSVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        34 M~I~Vt~~G~~~~i~-V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ..|.|+..|+.+.++ ++.++|+..||.++...+|++|++|++++.|..+. |+..+....|++|.+++|+-..
T Consensus         4 ~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt~   76 (473)
T KOG1872|consen    4 DTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGTA   76 (473)
T ss_pred             ceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeeccc
Confidence            457778999999998 99999999999999999999999999999999998 8889999999999999998654

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0001  Score=70.93  Aligned_cols=72  Identities=21%  Similarity=0.455  Sum_probs=62.5

Q ss_pred             EEEEEEeC----CeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee-eec
Q 019968           34 ILIFLSVG----GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV-LRL  106 (333)
Q Consensus        34 M~I~Vt~~----G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv-~rl  106 (333)
                      |.++|.+.    ...++++|+.+.+|.+||.-++..+|+|+++.+++|+|++|+ ++.+++.+.+...+.+|.+ +|+
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhhccCc
Confidence            45566432    355889999999999999999999999999999999999999 9999999999888888877 555

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0001  Score=55.17  Aligned_cols=68  Identities=22%  Similarity=0.211  Sum_probs=58.5

Q ss_pred             EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968           35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        35 ~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      .+.+ -+-|+...+..+++|||+++|..|+.++|..+++..|--.+.... |.-+|++|.|.+|..+.|.
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~k-d~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhh-cccceeeEEeccCccEEEe
Confidence            3444 356888999999999999999999999999999888876667777 9999999999999988764

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.14  E-value=0.00086  Score=54.11  Aligned_cols=60  Identities=17%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE-CC-eecccCCcccccccc
Q 019968           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-EG-RELARSNSRVRDYGL   94 (333)
Q Consensus        34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif-~G-~~L~~D~~tL~dygI   94 (333)
                      |-+.|+....++.++..++.||-+||.+++....-|++.|+|+. .. +.|. |..+|+++|.
T Consensus         3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~-D~ktL~d~gf   64 (110)
T KOG4495|consen    3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLD-DGKTLGDCGF   64 (110)
T ss_pred             eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhh-ccchhhhccc
Confidence            34455777788999999999999999999999999999999987 54 4565 9999999975

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=96.76  E-value=0.0039  Score=47.11  Aligned_cols=64  Identities=14%  Similarity=0.089  Sum_probs=47.1

Q ss_pred             EEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceee
Q 019968           38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        38 Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      |..+++.+.+.+.|+.|+.++-...++++|+.+++-.|.|+++.|+ -+.++.-.|+.+|+.+.|
T Consensus         2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ld-lslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLD-LSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             E-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEES-SS-BHHHH---SS-EEEE
T ss_pred             CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEec-cccceeecCCCCCCEEeC
Confidence            3467899999999999999999999999999999999999999997 889999999999998865

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=96.45  E-value=0.0038  Score=50.47  Aligned_cols=52  Identities=15%  Similarity=0.111  Sum_probs=45.1

Q ss_pred             cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE-CC-eecCCCCcccccCCC
Q 019968          120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-DG-EELEDQRLITDICKR  173 (333)
Q Consensus       120 k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif-~G-k~LeD~~tL~dy~I~  173 (333)
                      .++.++.+++.||-+||.+++....-|  ++.|+|.- +- +.|+|+.+|+|+|.+
T Consensus        12 ttif~da~es~tV~elK~~l~gi~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gft   65 (110)
T KOG4495|consen   12 TTIFTDAKESSTVFELKRKLEGILKRP--VNEQRLYKMDTEQLLDDGKTLGDCGFT   65 (110)
T ss_pred             eeEEeecCccccHHHHHHHHHHHHhCC--CcchheeecCHHHHhhccchhhhcccc
Confidence            357789999999999999999998889  99999986 44 456999999999864

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0016  Score=48.88  Aligned_cols=69  Identities=14%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      ++.++..-|+...+.+.+.+||+++|..|+..+|..  ++...|---+..+.|.-+|+||.+.+|-.+.|-
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~--~~kivl~k~~~i~kd~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCC--hhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence            345556668999999999999999999999999987  777666545556789999999999999877763

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.18  E-value=0.015  Score=44.99  Aligned_cols=68  Identities=22%  Similarity=0.325  Sum_probs=47.7

Q ss_pred             EEEEEEeC-CeEEEEEecCCCCHHHHHHHHHHhhCCCCcc------eEEE-ECCeecccCCccccccccccccceee
Q 019968           34 ILIFLSVG-GSVIPMRVMESDSIASVKLRIQSYNGFFVKK------QKLV-FEGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        34 M~I~Vt~~-G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~------Q~Li-f~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      .+|+|... |+.+.+.+..+.+|++|...+.+..+.+...      -.|. -+|..|. ++.+|++|||.+|+.++|
T Consensus         3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-PDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-TTSBCGGGT--TT-EEEE
T ss_pred             EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-CcCcHhHcCCCCCCEEEe
Confidence            45666554 5899999999999999999999988874332      2344 4689998 999999999999999876

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=96.04  E-value=0.027  Score=42.56  Aligned_cols=63  Identities=16%  Similarity=0.038  Sum_probs=46.4

Q ss_pred             eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 019968          116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       116 t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      +.+++.+++.|.|+.++.++-+....++|+.  +++-.|.|+++.|+-+.+++-.|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~--~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLD--PSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCC--ccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            4578899999999999999999999999998  88899999999999999999999999998875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=95.90  E-value=0.017  Score=46.96  Aligned_cols=51  Identities=18%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             EEEEEEe--cCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccC
Q 019968          121 VFEFHVE--RGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC  171 (333)
Q Consensus       121 ~~~l~V~--~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~  171 (333)
                      ..++++.  .+.||..||.+|.+..+-...-..+||+|+|+.|.|...++..-
T Consensus        13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l   65 (97)
T PF10302_consen   13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL   65 (97)
T ss_pred             CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence            3567776  78999999999999984332256679999999999988777543

They contain a characteristic GFDRL sequence motif.

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.016  Score=58.63  Aligned_cols=71  Identities=11%  Similarity=0.116  Sum_probs=62.8

Q ss_pred             eeEeeeCCcEEEEE-EecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          112 ITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       112 I~Vkt~~Gk~~~l~-V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |.|+ -.|+.++++ ++.++|+..+|+++...+|++  |+.|++.+.|..+.|+.......|++|.+++++-...
T Consensus         6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e   77 (473)
T KOG1872|consen    6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE   77 (473)
T ss_pred             Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCC--ccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence            3443 367888888 899999999999999999999  9999999999999998888889999999999987654

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=95.73  E-value=0.067  Score=41.26  Aligned_cols=71  Identities=15%  Similarity=0.124  Sum_probs=57.8

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCc-eEEE--ECCeecCC--CCcccccCCCCCCEEEE
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELI--CDGEELED--QRLITDICKRNEAVIHL  180 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~-QrLi--f~Gk~LeD--~~tL~dy~I~~gsvIhL  180 (333)
                      +...|.||..+|+.+.-...+++||.+|..-|......+  ... -.|+  |-.+.+.+  +.||.+.++.++++|++
T Consensus         5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~--~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSP--EESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCT--TTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCC--CCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            345678899999999999999999999999999887655  333 5676  67788844  36999999999999887

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=95.66  E-value=0.037  Score=42.81  Aligned_cols=70  Identities=17%  Similarity=0.170  Sum_probs=48.1

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCC-CCCc---eEEE-ECCeecCCCCcccccCCCCCCEEEE
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFV-DLKN---QELI-CDGEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~-~~~~---QrLi-f~Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      .|.|...+|+.+-+.+..+.+|++|...|.+..+.+. +...   -+|. -+|..|.++.+|++|+|.+|++++|
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            4566554568889999999999999999999877531 1222   3444 4789999999999999999999987

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.082  Score=43.05  Aligned_cols=77  Identities=14%  Similarity=0.338  Sum_probs=66.4

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      ..-+++.|. -++....+.|..+.+...|+..-++..|++.+..+..|+|+.+. ...|-.+.+..+|+.|.+.....+
T Consensus        18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~-~~~TP~~L~mEd~D~Iev~~~q~g   95 (99)
T KOG1769|consen   18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR-ETHTPADLEMEDGDEIEVVQEQTG   95 (99)
T ss_pred             cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC-CCCChhhhCCcCCcEEEEEeeccc
Confidence            345566664 56678899999999999999999999999999999999999998 999999999999999988765433

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=95.60  E-value=0.085  Score=40.68  Aligned_cols=73  Identities=22%  Similarity=0.236  Sum_probs=60.1

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcc-eEEE--ECCeecccCC-ccccccccccccceeee
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLV--FEGRELARSN-SRVRDYGLADGNVLHLV  103 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~-Q~Li--f~G~~L~~D~-~tL~dygI~~gstV~Lv  103 (333)
                      .....|-|+ .+|+.+.-...+++||.+|..-|......+... ..|+  |-.+.+..++ .+|++.|+.++++|++.
T Consensus         4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            456788886 588999999999999999999999987777654 6675  5678888555 79999999999998763

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=0.018  Score=52.86  Aligned_cols=66  Identities=15%  Similarity=0.237  Sum_probs=58.9

Q ss_pred             EEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968           37 FLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        37 ~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      .++.+++.+.+.+..-+|+.++|.++++..|+.+..|+++|.|..|- |...|..|+|..|+...+.
T Consensus       151 rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYvlq  216 (231)
T KOG0013|consen  151 RLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYVLQ  216 (231)
T ss_pred             HhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEEEE
Confidence            33456788999999999999999999999999999999999999999 9999999999999655443

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.12  Score=42.04  Aligned_cols=73  Identities=12%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      +.+-|+..++.+..+.|..+.....|+.--++..|+.  ...-|.+|+|+.+.+..|-++.+.++|+.|.++...
T Consensus        21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q   93 (99)
T KOG1769|consen   21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLS--MNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ   93 (99)
T ss_pred             EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCc--cceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence            3344555566778999999999999999999999999  899999999999999999999999999999987653

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=0.058  Score=49.45  Aligned_cols=103  Identities=17%  Similarity=0.266  Sum_probs=70.7

Q ss_pred             EEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE-ECC-----eecccCCccccccccccccceeeeee
Q 019968           34 ILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEG-----RELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        34 M~I~Vt~~G~--~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li-f~G-----~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      +.|+|+..-.  ...-...++.||.+||.|++..+|.+++.+.|. |.|     ..|++++..|..|+..+|-.||++-.
T Consensus         2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~   81 (234)
T KOG3206|consen    2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS   81 (234)
T ss_pred             eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence            4667753323  344567899999999999999999999999985 554     45887889999999999999998753


Q ss_pred             cccccceeEeeeCCcE-EEEEEe------cCCchHHHHHHH
Q 019968          106 LSDLQAITVTTVCGKV-FEFHVE------RGRNVGYVKQQI  139 (333)
Q Consensus       106 lsd~m~I~Vkt~~Gk~-~~l~V~------~sdTV~~LK~~I  139 (333)
                      ....  +. .+.+-.. -.+++.      +++||...|.+-
T Consensus        82 ~~~~--~~-~~~d~s~veky~iSee~Y~qRtdSvr~~kk~~  119 (234)
T KOG3206|consen   82 NAQS--IS-NTEDESIVEKYEISEEDYLQRTDSVRRFKKKH  119 (234)
T ss_pred             Cccc--cc-cccccccceeeecCHHHHhhhhHHHHHHHHHh
Confidence            3221  10 0111111 112222      578898888654

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=94.92  E-value=0.053  Score=44.11  Aligned_cols=51  Identities=16%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             eEEEEEec--CCCCHHHHHHHHHHhhC--CCCcceEEEECCeecccCCcccccccc
Q 019968           43 SVIPMRVM--ESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGL   94 (333)
Q Consensus        43 ~~~~i~V~--~sdTV~~LK~kI~~~~g--ip~~~Q~Lif~G~~L~~D~~tL~dygI   94 (333)
                      ..++++|.  .+.||..||..|.....  ..-..++|+|+|+.|. |+..|...-.
T Consensus        12 pDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~~l~   66 (97)
T PF10302_consen   12 PDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSSELK   66 (97)
T ss_pred             CCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhhhhc
Confidence            33667777  88999999999999873  4455788999999998 7776655443

They contain a characteristic GFDRL sequence motif.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=94.90  E-value=0.14  Score=39.65  Aligned_cols=70  Identities=6%  Similarity=-0.007  Sum_probs=55.8

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL  180 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~LeD---~~tL~dy~I~~gsvIhL  180 (333)
                      ...|.||..+|+.+.-....++||.+|.+-|....+..  ...-.|+  |-.+.+.+   +.||.+.++.+++++.+
T Consensus         4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            34678899999999999999999999999997666655  4556675  66777743   57999999988888775

Present in FAF1 and Shp1p.

>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]

Probab=94.90  E-value=0.012  Score=56.70  Aligned_cols=40  Identities=35%  Similarity=0.517  Sum_probs=37.6

Q ss_pred             hhhhccCCCceeeeeeeecccCCchhHHHHHHHHHhhccCC
Q 019968          263 VDGLERGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLP  303 (333)
Q Consensus       263 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (333)
                      ++++++|+++++||.+||||++.+ +..+.++.+|..++.+
T Consensus       246 k~~~~~~l~~~~~g~~~~re~~~~-~~~~~~~~~~~~~~~~  285 (286)
T KOG2381|consen  246 KKAFEKQLSVMRIGILNLREALKD-SKLEQLCVEAKASVVE  285 (286)
T ss_pred             HHHHHhCchHhhccceehHHHHhh-CccHHHHHhhhhcccC
Confidence            999999999999999999999998 9999999999887765

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=94.63  E-value=0.15  Score=45.22  Aligned_cols=73  Identities=12%  Similarity=0.185  Sum_probs=54.5

Q ss_pred             cceeEeeeCC----cEEEEEEecCCchHHHHHHHHHhcCCCCCCCce-EEEE-CCeec--CCCCcccccCCCCCC----E
Q 019968          110 QAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQ-ELIC-DGEEL--EDQRLITDICKRNEA----V  177 (333)
Q Consensus       110 m~I~Vkt~~G----k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~Q-rLif-~Gk~L--eD~~tL~dy~I~~gs----v  177 (333)
                      |+|+|.+++|    .++.+.+.++.||.+|+.+|.+..+++  ...| .|.+ .|+.|  .++..++.+.-.+.+    +
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~   78 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFIT   78 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCC--ccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceE
Confidence            5789999999    588899999999999999999999988  6664 4554 46666  456667766544433    5


Q ss_pred             EEEEeec
Q 019968          178 IHLLVRK  184 (333)
Q Consensus       178 IhLv~r~  184 (333)
                      ++|..++
T Consensus        79 l~l~~rl   85 (162)
T PF13019_consen   79 LRLSLRL   85 (162)
T ss_pred             EEEEEec
Confidence            6666664

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=94.60  E-value=0.17  Score=39.37  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=53.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC-CCCcccccCCCCCCEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE-DQRLITDICKRNEAVI  178 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le-D~~tL~dy~I~~gsvI  178 (333)
                      ..|.||..+|+.+.-....++||++|.+-|....+.+ +.....|.  |-.++|. ++.||.|.|+.+..++
T Consensus         5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~-~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF-AARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC-CCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            4578899999999999999999999999999875422 13455665  7788884 4889999999764443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=94.48  E-value=0.13  Score=45.63  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=53.4

Q ss_pred             EEEEE-EeCC----eEEEEEecCCCCHHHHHHHHHHhhCCCCcce-EEEE-CCeecc-cCCcccccccccccc----cee
Q 019968           34 ILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQ-KLVF-EGRELA-RSNSRVRDYGLADGN----VLH  101 (333)
Q Consensus        34 M~I~V-t~~G----~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q-~Lif-~G~~L~-~D~~tL~dygI~~gs----tV~  101 (333)
                      |+|+| +++|    .++.+.+.++.||.+|+.+|....+++...| .|.+ .++.|. .++..+..+.-.+.+    +++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            68899 5888    6899999999999999999999999998874 4555 355653 245555555543332    455


Q ss_pred             eeeeccc
Q 019968          102 LVLRLSD  108 (333)
Q Consensus       102 Lv~rlsd  108 (333)
                      +.+++.+
T Consensus        81 l~~rl~G   87 (162)
T PF13019_consen   81 LSLRLRG   87 (162)
T ss_pred             EEEeccC
Confidence            5555543

>COG5417 Uncharacterized small protein [Function unknown]

Probab=94.45  E-value=0.21  Score=38.75  Aligned_cols=69  Identities=17%  Similarity=0.302  Sum_probs=56.0

Q ss_pred             cEEEEE--E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCC-----cceEEEECCeecccCCccccccccccccceee
Q 019968           33 SILIFL--S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFV-----KKQKLVFEGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        33 ~M~I~V--t-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~-----~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      .|+|+|  + ..|.++.+.+....+|..|-..+.+...+..     .+.+..-.++.|. ++..|.+|+|.+|+.+.+
T Consensus         4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~lls-gd~kL~d~~IadGD~Lei   80 (81)
T COG5417           4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLS-GDDKLIDYQIADGDILEI   80 (81)
T ss_pred             eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEec-CCceEEeccccCCCEEEe
Confidence            355566  3 5789999999999999999988888766532     3557788899999 999999999999998754

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.98  E-value=0.082  Score=48.59  Aligned_cols=61  Identities=15%  Similarity=0.088  Sum_probs=55.3

Q ss_pred             CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 019968          118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      +++.+-+.+...+|+.++|.+++.+.|+.  +..|+++|+|+.|-|...|..|++.+|..-.+
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl  215 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVD--PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL  215 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccc--hhhheeeccCCceeccccceeeeecCCCEEEE
Confidence            56778899999999999999999999988  89999999999999999999999999954443

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=93.68  E-value=0.4  Score=37.14  Aligned_cols=68  Identities=9%  Similarity=0.123  Sum_probs=54.5

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL  180 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~LeD---~~tL~dy~I~~gsvIhL  180 (333)
                      ..|.||..+|+.+.-....++|+++|.+-|....+.   .....|+  |-.|.+.+   +.||.+.|+.+.++|.+
T Consensus         5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~---~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN---GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC---CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            457889999999888999999999999999876543   2445665  67788843   57999999999888876

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=93.66  E-value=0.41  Score=36.95  Aligned_cols=71  Identities=18%  Similarity=0.157  Sum_probs=56.1

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecccC--Cccccccccccccceee
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL  102 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~~D--~~tL~dygI~~gstV~L  102 (333)
                      ..-+|-|+ .+|+.+.-...+++||.+|..-|....+.......|+  |-.+.+.++  +.+|.+.|+.+++++.+
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            35677786 6889999999999999999999976666665566775  556777643  47999999998888765

Present in FAF1 and Shp1p.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=93.48  E-value=0.49  Score=36.18  Aligned_cols=66  Identities=14%  Similarity=0.145  Sum_probs=51.2

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC---CCCcccccCCCCCCEEEE
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVIHL  180 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le---D~~tL~dy~I~~gsvIhL  180 (333)
                      .|.||..+|+.+.-....++||.+|.+-|......   .....|+  |-.+.+.   ++.||.+.|+. .+++.+
T Consensus         4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~---~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~   74 (77)
T cd01767           4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP---AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ   74 (77)
T ss_pred             EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC---CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence            57789999999988999999999999999876543   3455666  5677774   47899999998 455444

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=93.48  E-value=0.37  Score=37.55  Aligned_cols=68  Identities=16%  Similarity=0.244  Sum_probs=53.2

Q ss_pred             cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCC-CcceEEE--ECCeecccCCccccccccccccce
Q 019968           33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLV--FEGRELARSNSRVRDYGLADGNVL  100 (333)
Q Consensus        33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip-~~~Q~Li--f~G~~L~~D~~tL~dygI~~gstV  100 (333)
                      .-+|-|+ .+|+.+.-.++.++||.+|..-|....+-+ .....|.  |-.+.|.+++.||.+.|+.+..++
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            4567776 588999999999999999999999875432 2445665  678889877899999999865443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=93.39  E-value=0.71  Score=42.49  Aligned_cols=112  Identities=17%  Similarity=0.158  Sum_probs=58.9

Q ss_pred             CcEEEEEEeC----CeEEEEEecCCCCHHHHHHHHHHhhCCCCc---ceEE--EECCee---cccCCccccccccccccc
Q 019968           32 DSILIFLSVG----GSVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKL--VFEGRE---LARSNSRVRDYGLADGNV   99 (333)
Q Consensus        32 ~~M~I~Vt~~----G~~~~i~V~~sdTV~~LK~kI~~~~gip~~---~Q~L--if~G~~---L~~D~~tL~dygI~~gst   99 (333)
                      ..|+|+....    -..+.+-|..+.||.+|..+++.+.+++..   ..+|  +++++.   +. .+..+.+.  .+...
T Consensus        19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l--~~~~~   95 (213)
T PF14533_consen   19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL--NDYIT   95 (213)
T ss_dssp             --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TTE
T ss_pred             eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc--cCcce
Confidence            3466666322    245888999999999999999999998765   3343  345543   54 55555554  22222


Q ss_pred             eeeeeecc----------cccceeEee-------eCCcEEEEEEecCCchHHHHHHHHHhcCCC
Q 019968          100 LHLVLRLS----------DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF  146 (333)
Q Consensus       100 V~Lv~rls----------d~m~I~Vkt-------~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip  146 (333)
                      +.+-.-+.          +.+.|.|-.       ..|-.|.+.|.+.+|..++|.||+++.|++
T Consensus        96 ~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~  159 (213)
T PF14533_consen   96 LRIEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVS  159 (213)
T ss_dssp             EEEEE--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---
T ss_pred             eeeecCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCC
Confidence            22221111          112233322       346778899999999999999999999976

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=92.71  E-value=0.75  Score=36.37  Aligned_cols=70  Identities=11%  Similarity=0.074  Sum_probs=55.2

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC--eecC--------CCCcccccCCCCCCE
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG--EELE--------DQRLITDICKRNEAV  177 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G--k~Le--------D~~tL~dy~I~~gsv  177 (333)
                      +...|.+|..+|+...-+...++||+.|..-|.. .+..  +....|+++=  +.+.        .+.||.+-|+.+..+
T Consensus         3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~--~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~   79 (85)
T cd01774           3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKET--PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEV   79 (85)
T ss_pred             ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCC--CCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccE
Confidence            3456888999999888888999999999999964 4444  6778888544  7775        367999999988887


Q ss_pred             EEE
Q 019968          178 IHL  180 (333)
Q Consensus       178 IhL  180 (333)
                      +.+
T Consensus        80 L~V   82 (85)
T cd01774          80 LFV   82 (85)
T ss_pred             EEE
Confidence            765

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=92.50  E-value=0.51  Score=37.78  Aligned_cols=66  Identities=24%  Similarity=0.280  Sum_probs=45.8

Q ss_pred             eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE-E---CCe-ecccCCccccccccccccceeeeeecccc
Q 019968           43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-F---EGR-ELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        43 ~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li-f---~G~-~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ..++-.+...|||+.++..+.+.+.+ ...-||- +   ++. .|.+.+.|+.+.+|.+|.+|.+-.|..||
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG   84 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG   84 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence            46778889999999999999999999 4556663 2   233 47656789999999999999888776654

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=91.63  E-value=1.1  Score=34.18  Aligned_cols=65  Identities=18%  Similarity=0.230  Sum_probs=49.4

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeeccc--CCccccccccccccc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGNV   99 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~~--D~~tL~dygI~~gst   99 (333)
                      -+|-|+ .+|+.+.-....++||.+|..-|.....- .....|+  |-.+.+.+  .+.+|.+.|+.+.+.
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~   72 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVV   72 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceE
Confidence            456776 58899999999999999999999876543 3445565  55677764  578999999995443

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=91.39  E-value=1.3  Score=35.03  Aligned_cols=70  Identities=7%  Similarity=0.013  Sum_probs=57.4

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEe
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~L---eD~~tL~dy~I~~gsvIhLv~  182 (333)
                      -+|.||.++|+...-....++++..|-.-+.. .|.+  ++...|+  |=-|.+   +.+.||.+.|+.+..+|.+--
T Consensus         6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~   80 (82)
T cd01773           6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE   80 (82)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence            36888999999999999999999999999888 4666  7878887  666766   235799999999999987743

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=91.21  E-value=0.26  Score=46.51  Aligned_cols=68  Identities=21%  Similarity=0.269  Sum_probs=48.5

Q ss_pred             EEEEE-EeCC-eEEE-EEecCCCCHHHHHHHHH-HhhCCCCcceEEE----ECCeecccCCccccccccccccceee
Q 019968           34 ILIFL-SVGG-SVIP-MRVMESDSIASVKLRIQ-SYNGFFVKKQKLV----FEGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        34 M~I~V-t~~G-~~~~-i~V~~sdTV~~LK~kI~-~~~gip~~~Q~Li----f~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      |.|++ +.++ -..+ .+...+.||.+++.++. +...+.+..+++.    -+|+.|. |+.+|++|+...|+++.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~-~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI-DNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc-chhHHHHhccCCCCEEEE
Confidence            56777 3433 3333 66788999999995554 4566777555443    3699999 999999999999977654

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=91.16  E-value=0.38  Score=45.43  Aligned_cols=69  Identities=14%  Similarity=0.127  Sum_probs=49.3

Q ss_pred             cceeEeeeCCc-EEE-EEEecCCchHHHHHHHHHh-cCCCCCCCceEEEE----CCeecCCCCcccccCCCCCCEEEE
Q 019968          110 QAITVTTVCGK-VFE-FHVERGRNVGYVKQQIAKK-GREFVDLKNQELIC----DGEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       110 m~I~Vkt~~Gk-~~~-l~V~~sdTV~~LK~~I~~~-~Gip~~~~~QrLif----~Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      |.|++...++. ..+ .....+.|+.+++..+..+ ..+.  +..+|+.+    .|+.|-|+++|++|+..+|++|.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~--~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKIT--PYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccC--ccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            45666554442 233 5566789999999766665 4565  55555543    899999999999999999987776

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=90.19  E-value=1.5  Score=33.90  Aligned_cols=69  Identities=17%  Similarity=0.299  Sum_probs=53.4

Q ss_pred             cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecccC--Cccccccccccccceee
Q 019968           33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL  102 (333)
Q Consensus        33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~~D--~~tL~dygI~~gstV~L  102 (333)
                      .-+|.|+ .+|..+.-....++|+.++..-|....+-. ....|+  |-.+.+.++  +.||.+.|+.+.+++.+
T Consensus         4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            3567776 688999999999999999999999765433 445565  556777622  57999999999988866

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=89.73  E-value=2  Score=33.43  Aligned_cols=66  Identities=8%  Similarity=0.125  Sum_probs=52.5

Q ss_pred             eeeCCcEEEEEEecCCchHHHHHHHHHhcCCCC-CC--CceEEEECCeecCCCCcccccCCCCCCEEEE
Q 019968          115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFV-DL--KNQELICDGEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       115 kt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~-~~--~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      +.-+|+++-+++....+|..|-..+.+...+.. +.  ++.+..-.++.|.++..|.||+|.+|+.+.+
T Consensus        12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417          12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            335689999999999999999888887665321 12  3457778889999999999999999998875

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=89.69  E-value=0.63  Score=36.05  Aligned_cols=58  Identities=24%  Similarity=0.326  Sum_probs=47.6

Q ss_pred             EecCCchHHHHHHHHHhcC-CCCCCCceEEEECCeecCCCCccccc-CCCCCCEEEEEeecC
Q 019968          126 VERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDI-CKRNEAVIHLLVRKS  185 (333)
Q Consensus       126 V~~sdTV~~LK~~I~~~~G-ip~~~~~QrLif~Gk~LeD~~tL~dy-~I~~gsvIhLv~r~~  185 (333)
                      |.++++|.++++-+..... ..  -..-.|.++|+.|+|...|+++ ++++++++.++..+.
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~--~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pY   60 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCY--LTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPY   60 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccc--eeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCC
Confidence            5678999999999988754 33  5667888999999999999888 588899999986543

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=89.46  E-value=2.5  Score=32.94  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=57.7

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc--cCCccccccccccccceeeee
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~--~D~~tL~dygI~~gstV~Lv~  104 (333)
                      ...+|-|+ .+|+...-....++|+.+|-.-|... |.++...+|+  |--+.+.  +.+.||.+.|+....++.+-.
T Consensus         3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Vee   79 (80)
T cd01771           3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEE   79 (80)
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEc
Confidence            35677887 68899999999999999999999875 7777778886  5567674  246799999999888887643

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=88.55  E-value=1.5  Score=35.24  Aligned_cols=73  Identities=11%  Similarity=0.256  Sum_probs=63.6

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      .+.+.+.|. .+|..+.+.|..+.|...|-..-+...|-..+..++.|+|+.+. -++|-.+++..+|+.|..+.
T Consensus        22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~-~dqTP~dldmEdnd~iEav~   95 (103)
T COG5227          22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRID-LDQTPGDLDMEDNDEIEAVT   95 (103)
T ss_pred             ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecC-CCCChhhcCCccchHHHHHH
Confidence            334666664 67889999999999999999999999999999999999999998 99999999999999876653

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=88.42  E-value=0.65  Score=35.97  Aligned_cols=59  Identities=22%  Similarity=0.340  Sum_probs=46.4

Q ss_pred             ecCCCCHHHHHHHHHHhhCC-CCcceEEEECCeecccCCcccccc-ccccccceeeeeeccc
Q 019968           49 VMESDSIASVKLRIQSYNGF-FVKKQKLVFEGRELARSNSRVRDY-GLADGNVLHLVLRLSD  108 (333)
Q Consensus        49 V~~sdTV~~LK~kI~~~~gi-p~~~Q~Lif~G~~L~~D~~tL~dy-gI~~gstV~Lv~rlsd  108 (333)
                      |.++++|.++++-+...... .-....|.++|..|. +...|++. |+++|.++.++..+..
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~-~~~el~~i~~~~~~~~L~lve~pYt   61 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLD-DFVELSEIEGIKDGCVLELVEEPYT   61 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccC-CchhhhhhhCCCCCcEEEEEecCCC
Confidence            56899999999999887442 344567889999997 88888888 4888888888876643

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=88.30  E-value=3.8  Score=30.97  Aligned_cols=59  Identities=19%  Similarity=0.141  Sum_probs=47.6

Q ss_pred             EeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE----CC--eecCCCCcccccCCC
Q 019968          114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DG--EELEDQRLITDICKR  173 (333)
Q Consensus       114 Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif----~G--k~LeD~~tL~dy~I~  173 (333)
                      |+.++|...++.|+++.|+.++=..|+++.|+. +.+---|.|    +|  .-|+.+++|.++...
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~   65 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK   65 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence            567889999999999999999999999999986 356667878    22  346788889888776

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=87.73  E-value=5.9  Score=37.31  Aligned_cols=123  Identities=15%  Similarity=0.237  Sum_probs=81.6

Q ss_pred             CCCcEEEEEE-e--CCeEEE----EEecCCCCHHHHHHHHHHhhCCCCcceEEEEC----C--eecccCCcccccccccc
Q 019968           30 SNDSILIFLS-V--GGSVIP----MRVMESDSIASVKLRIQSYNGFFVKKQKLVFE----G--RELARSNSRVRDYGLAD   96 (333)
Q Consensus        30 ~~~~M~I~Vt-~--~G~~~~----i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~----G--~~L~~D~~tL~dygI~~   96 (333)
                      ....+.||+| +  ..+++.    +-|..+++|+++-..|.+..|+|++...++|.    +  ..+. .+.++..+.+.+
T Consensus        65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~-~~~t~~~~el~~  143 (249)
T PF12436_consen   65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPID-PNQTFEKAELQD  143 (249)
T ss_dssp             TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--T
T ss_pred             CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcC-CCCchhhcccCC
Confidence            4568999997 2  223322    46899999999999999999999998877775    3  3465 889999999999


Q ss_pred             ccceeeeeeccc--------------------ccceeEee---eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceE
Q 019968           97 GNVLHLVLRLSD--------------------LQAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQE  153 (333)
Q Consensus        97 gstV~Lv~rlsd--------------------~m~I~Vkt---~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~Qr  153 (333)
                      |+.|-.-...+.                    -+.|.++-   ..+..|.+.+....|-.+|-++|++..++.  |..-|
T Consensus       144 GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~d--P~~lr  221 (249)
T PF12436_consen  144 GDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVD--PEHLR  221 (249)
T ss_dssp             TEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS---GGGEE
T ss_pred             CCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC--hHHEE
Confidence            999877664431                    13344433   233579999999999999999999999987  88877


Q ss_pred             EE
Q 019968          154 LI  155 (333)
Q Consensus       154 Li  155 (333)
                      |.
T Consensus       222 ~~  223 (249)
T PF12436_consen  222 FF  223 (249)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=87.65  E-value=4.2  Score=32.07  Aligned_cols=74  Identities=18%  Similarity=0.305  Sum_probs=59.0

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeeccc--CCccccccccccccceeeeee
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~~--D~~tL~dygI~~gstV~Lv~r  105 (333)
                      ...-+|.|+ .+|+...-....++|+.+|-.-+.. .|.++....|+  |--+.+..  .+.||.+.|+.+.+++.+.-|
T Consensus         3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r   81 (82)
T cd01773           3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER   81 (82)
T ss_pred             CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence            345578886 6899999999999999999999998 57788888886  45566542  357999999999999877543

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=87.52  E-value=3.8  Score=31.97  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=55.8

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC---CCCcccccCCCCCCEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVIHL  180 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le---D~~tL~dy~I~~gsvIhL  180 (333)
                      ..|.||.++|+...-+...++++..|-.-|... |.+  +...+|+  |=-+.+.   .+.||.+.|+.+..+|.+
T Consensus         5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V   77 (80)
T cd01771           5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL   77 (80)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence            467888999998888999999999999999765 666  6777887  6777773   357999999998888876

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=87.23  E-value=2.5  Score=34.04  Aligned_cols=70  Identities=10%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      +.+-|...+|.+..+.|..+.+...|-.--+...|-.  .+.-|++|+|+.++-++|-.|++..+++.|..+
T Consensus        25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~--m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav   94 (103)
T COG5227          25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKN--MSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAV   94 (103)
T ss_pred             cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcC--cceeEEEEcceecCCCCChhhcCCccchHHHHH
Confidence            3344444567888999999999999888778888877  888999999999999999999999998877653

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=86.91  E-value=4.4  Score=31.95  Aligned_cols=70  Identities=20%  Similarity=0.268  Sum_probs=54.0

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC--Ceecc-------cCCcccccccccccccee
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA-------RSNSRVRDYGLADGNVLH  101 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~--G~~L~-------~D~~tL~dygI~~gstV~  101 (333)
                      ...+|-++ .+|+.+.-....++||.+|..-|... +-.+....|+.+  -+.+.       +.+.||.+.|+.+.+++.
T Consensus         3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~   81 (85)
T cd01774           3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF   81 (85)
T ss_pred             ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence            46778887 68899999999999999999999754 445566777643  36664       246799999999888765


Q ss_pred             e
Q 019968          102 L  102 (333)
Q Consensus       102 L  102 (333)
                      +
T Consensus        82 V   82 (85)
T cd01774          82 V   82 (85)
T ss_pred             E
Confidence            5

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=86.54  E-value=0.9  Score=45.00  Aligned_cols=69  Identities=20%  Similarity=0.304  Sum_probs=61.8

Q ss_pred             CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccC-Cccccccccccccceeeeeecccc
Q 019968           41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARS-NSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        41 ~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D-~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ..+.+++++...-....++..++..+|++.+.--|+|+++++..+ ...+..||+++++.+.+.-+.++.
T Consensus        11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~   80 (380)
T KOG0012|consen   11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP   80 (380)
T ss_pred             ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence            458899999999999999999999999999999999999999855 578999999999999888777665

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=85.91  E-value=0.32  Score=47.70  Aligned_cols=74  Identities=20%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             cceeEeeeCCc--EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCC--CCCEEEEEee
Q 019968          110 QAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR--NEAVIHLLVR  183 (333)
Q Consensus       110 m~I~Vkt~~Gk--~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~--~gsvIhLv~r  183 (333)
                      ..++++..+.+  ...+..+...||++||..+....--.+=+.+|||+|.||.|.|...++|.-++  +.-+.|||..
T Consensus        10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn   87 (391)
T KOG4583|consen   10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN   87 (391)
T ss_pred             eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence            34566666654  45566677899999999999876322125889999999999999999887543  3345666654

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=84.64  E-value=3.9  Score=32.21  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=37.6

Q ss_pred             EEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCe
Q 019968           36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR   80 (333)
Q Consensus        36 I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~   80 (333)
                      |.|.+.+ ++.|.|.++.+..+|..+|.++.++|++...|.|...
T Consensus         5 vKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde   48 (80)
T cd06406           5 VKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE   48 (80)
T ss_pred             EEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence            4444554 9999999999999999999999999999999988543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=84.38  E-value=4.2  Score=31.92  Aligned_cols=45  Identities=16%  Similarity=0.078  Sum_probs=38.0

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCC-cceEEEEC
Q 019968           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFE   78 (333)
Q Consensus        34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~-~~Q~Lif~   78 (333)
                      |+|.+++.|..+.+.+.++.+..+|+.+|.++.++.. ....|.|.
T Consensus         1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~   46 (82)
T cd06407           1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL   46 (82)
T ss_pred             CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence            4677788999999999999999999999999999864 45566663

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=83.96  E-value=2.3  Score=39.20  Aligned_cols=65  Identities=14%  Similarity=0.128  Sum_probs=52.2

Q ss_pred             EEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE-ECC-----eecC-CCCcccccCCCCCCEEEEEeecCCcc
Q 019968          122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDG-----EELE-DQRLITDICKRNEAVIHLLVRKSAKV  188 (333)
Q Consensus       122 ~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi-f~G-----k~Le-D~~tL~dy~I~~gsvIhLv~r~~~~v  188 (333)
                      +..+..++.|++++|.+++-..|.+  ++.+.|. |.|     -.|. ++..|..|...+|-.||++-.-...+
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~   86 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSI   86 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccc
Confidence            3445678999999999999999999  9999986 665     3464 57789999999999999986544333

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=83.80  E-value=5.9  Score=31.61  Aligned_cols=60  Identities=12%  Similarity=0.192  Sum_probs=43.6

Q ss_pred             EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      .+...++-..++..||..++.+.++.-+...+++.+..|. ++.+|-+.+++-.-+|.+.+
T Consensus         4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~-~~k~L~dQcVqgeGlVQlnv   63 (88)
T PF11620_consen    4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLE-PHKSLVDQCVQGEGLVQLNV   63 (88)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEE
T ss_pred             eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceec-CCccHHHhhccccCEEEEEE
Confidence            4566788889999999999999999999999999998897 99999999998888887753

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>smart00666 PB1 PB1 domain

Probab=82.57  E-value=6.9  Score=29.67  Aligned_cols=45  Identities=16%  Similarity=0.220  Sum_probs=38.2

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC
Q 019968           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE   78 (333)
Q Consensus        34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~   78 (333)
                      +.|.+.+.+....+.+.++.|..+|+.+|....+++.....|.|.
T Consensus         2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~   46 (81)
T smart00666        2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ   46 (81)
T ss_pred             ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence            456666788999999999999999999999999988666777775

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	333
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		5e-16
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		8e-16
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-15
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		1e-15
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		1e-15
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		8e-07
3jvz_X	81	E2~ubiquitin-Hect Length = 81		3e-06
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-06
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		4e-06
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		4e-06
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		5e-06
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		6e-06
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		6e-06
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		6e-06
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		6e-06
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		7e-06
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		4e-04
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		7e-06
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		7e-06
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		7e-06
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		7e-06
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		7e-06
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		7e-06
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		8e-06
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		8e-06
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		8e-06
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-06
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		9e-06
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		9e-06
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		9e-06
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		1e-05
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-04
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		1e-05
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		1e-05
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		1e-05
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		1e-05
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-05
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		1e-05
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-05
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		1e-05
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		1e-05
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		1e-05
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		1e-05
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		1e-05
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		1e-05
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		1e-05
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		8e-04
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		2e-05
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		3e-04
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		2e-05
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		3e-05
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		1e-04
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-05
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		7e-04
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		3e-05
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-05
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		4e-05
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		3e-04
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		4e-05
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		5e-05
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		6e-05
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		6e-05
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		7e-05
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		8e-05
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		1e-04
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		1e-04
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		1e-04
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		2e-04
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		2e-04
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		2e-04
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		3e-04
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		3e-04

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 2   SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 60
Query: 92  YGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN 151
           Y +   + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQ 118
Query: 152 QELICDGEELEDQRLITDICKRNEAVIHLLVR 183
           Q LI  G++LED R ++D   + E+ +HL++R
Sbjct: 119 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 150

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 119
Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 119
Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 119
Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 23  IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 81
Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 82  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 139
Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 140 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 168

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 40  VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNV 99
           VGG  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + 
Sbjct: 15  VGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKEST 73
Query: 100 LHLVLRL 106
           LHLVLRL
Sbjct: 74  LHLVLRL 80

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
           S  S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + 
Sbjct: 2   SGGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT- 60
Query: 89  VRDYGLADGNVLHLVLRL 106
           + DY +   + LHLVLRL
Sbjct: 61  LSDYNIQKESTLHLVLRL 78

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F GR+L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G   ++Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F GR+L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QRESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           ++++ IF+ ++ G  I + V  +DSI ++K +IQ   G    +Q+L+F G++L    + +
Sbjct: 1   SNAMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKT-L 59
Query: 90  RDYGLADGNVLHLVLRL 106
            DY +   + LHLVLRL
Sbjct: 60  SDYNIQKESTLHLVLRL 76

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 62
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 63  QKESTLHLVLRL 74

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 172 KRNEAVIHLL--VRKSAKVRAKPVQKDF 197
            + E+ +HL+  +R  A +R  P ++D 
Sbjct: 62  IQKESTLHLVLRLRGYADLREDPDRQDH 89

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G+ I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 17  SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 75
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 76  YNIQKESTLHLVLRL 90

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRT-LADYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 291
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 292 YNIQKESTLHLVLRL 306

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 5   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 63
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 64  QKESTLHLVLRL 75

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +V+ RIQ   G    +Q+L+F GR+L    + + DY +   +
Sbjct: 14  TLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRT-LADYNIQRES 72
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 73  TLHLVLRL 80

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 64
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 65  QKESTLHLVLRL 76

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           ++++ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + +
Sbjct: 1   SNAMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-L 59
Query: 90  RDYGLADGNVLHLVLRL 106
            DY +   + LHLVLRL
Sbjct: 60  SDYNIQKESTLHLVLRL 76

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRL 166
           S+   I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R 
Sbjct: 1   SNAMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRT 58
Query: 167 ITDICKRNEAVIHLLVR 183
           ++D   + E+ +HL++R
Sbjct: 59  LSDYNIQKESTLHLVLR 75

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 62
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 63  QKESTLHLVLRL 74

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 17  SMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 75
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 76  YNIQKESTLHLVLRL 90

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           ++ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 35  AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 93
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 94  YNIQKESTLHLVLRL 108

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G+ I + V  SD+I +VK +IQ+  G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 64
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 65  QKESTLHLVLRL 76

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           ++ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 35  AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 93
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 94  YNIQKESTLHLVLRL 108

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QRESTLHLVLRL 73

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 7   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 65
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 66  QKESTLHLVLRL 77

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + +
Sbjct: 8   SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSE 66
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 67  YNIQKESTLHLVLRL 81

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLR 105
              + LHLVLR
Sbjct: 62  QKESTLHLVLR 72

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 64
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 65  QRESTLHLVLRL 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  +D++ +VK +I    G    +Q+L+F G++L  SN+ + D
Sbjct: 5   SMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNA-MSD 63
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 64  YNVQKESTLHLVLRL 78

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     V+    VG VK +I  K  E +    Q LI  G++LED   ++D  
Sbjct: 8   IFVKTLTGKTITIDVDHADTVGAVKAKIYDK--EGIPPDQQRLIFGGKQLEDSNAMSDYN 65
Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 66  VQKESTLHLVLR 77

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 13  EESLNFPGNFTHRPEKLSNDSILIFLS------------VGGSVIPMRVMESDSIASVKL 60
           E  +N+   F +    L +   LI+ +            + G  I + V  SD+I +VK 
Sbjct: 74  EADINYTSGFRNSDRILYSSDWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKA 133
Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106
           +IQ   G    +Q+L+F G++L    + + DY +   + LHLVLRL
Sbjct: 134 KIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKESTLHLVLRL 178

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 23  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 81
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 82  QKESTLHLVLRL 93

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL 161
           LV R S +Q I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++L
Sbjct: 14  LVPRGSHMQ-IFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQL 70
Query: 162 EDQRLITDICKRNEAVIHLLVR 183
           ED R ++D   + E+ +HL++R
Sbjct: 71  EDGRTLSDYNIQKESTLHLVLR 92

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 29  TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 87
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 88  TLHLVLRL 95

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 25  IFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 83  IQKESTLHLVLR 94

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G +L    + + DY +   +
Sbjct: 7   TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRT-LSDYNIQRES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L++ G++L    + + DY +   + LH
Sbjct: 19  GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRT-LSDYNIQRESTLH 77
Query: 102 LVLRL---SDLQAITVTTVCGKVFEFHVERGRNVG 133
           LVLRL   S   A     +  K  E  ++  RN G
Sbjct: 78  LVLRLRGGSMGGAADEEELIRKAIELSLKESRNSG 112

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 44  VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103
            I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + LHLV
Sbjct: 20  TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKESTLHLV 78
Query: 104 LRL 106
           LRL
Sbjct: 79  LRL 81

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ        +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ        +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + +  +D+I  +K R++   G    +Q+L++ G++LA  +   +DY +  G+
Sbjct: 7   TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTAKDYNIEGGS 65
Query: 99  VLHLVLRL 106
           VLHLVL L
Sbjct: 66  VLHLVLAL 73

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LH VLRL
Sbjct: 62  QKESTLHSVLRL 73

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++     + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              +  HLVLRL
Sbjct: 62  QKESTXHLVLRL 73

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           +FL ++ G  + + V  SD++ + K +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   VFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + +HLVLRL
Sbjct: 62  QKESTIHLVLRL 73

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-----KKQKLVFEGRELARSNSRV 89
           IF+ ++ G  I + V  SD+I +VK +IQ   G +       +Q+L+F G++L    + +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT-L 61
Query: 90  RDYGLADGNVLHLVLRL 106
            DY +   + LHLVLRL
Sbjct: 62  SDYNIQKESTLHLVLRL 78

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35  LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           L   ++ G  + + +  SD++ ++K +IQ   G    +Q+L+F G++L    + + DY L
Sbjct: 3   LFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNL 61
Query: 95  ADGNVLHLVLRL 106
              + +HLVLRL
Sbjct: 62  QKESTIHLVLRL 73

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 35  LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           L   ++ G    + +  SD+I ++K +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 12  LFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 70
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 71  QKESTLHLVLRL 82

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
           S  S+LI + ++ G  I + +  +D +  +K R++   G   ++Q+L++ G+++    + 
Sbjct: 9   SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA 68
Query: 89  VRDYGLADGNVLHLVLRL 106
             DY +  G+VLHLVLRL
Sbjct: 69  A-DYKILGGSVLHLVLRL 85

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +QKL+F  ++L    + + D
Sbjct: 2   SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRT-LSD 60
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + L+LVLRL
Sbjct: 61  YNIHKESFLYLVLRL 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	2e-25
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	2e-08
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	3e-25
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	2e-08
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-24
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	4e-09
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	2e-04
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	3e-14
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	2e-05
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	3e-13
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	1e-07
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	4e-13
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	3e-09
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	1e-12
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	4e-08
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	1e-12
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	8e-07
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	1e-12
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-08
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	1e-12
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-09
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-12
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-07
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-12
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-07
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-12
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	8e-09
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	4e-12
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	7e-09
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	4e-12
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	3e-07
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	7e-12
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	3e-06
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	7e-12
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	1e-06
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	1e-11
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	5e-07
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	2e-11
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	8e-07
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-11
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	1e-05
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-11
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	3e-08
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	3e-11
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-08
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	5e-11
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-05
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	7e-11
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	6e-08
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	7e-11
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-06
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	8e-11
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	1e-06
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-11
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-08
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	9e-11
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	2e-07
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	1e-10
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	4e-05
1we6_A	111	Splicing factor, putative; structural genomics, ub	1e-10
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	2e-10
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	1e-07
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-10
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	3e-10
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	2e-07
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	8e-10
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	4e-08
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	9e-10
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	5e-08
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-09
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-06
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	2e-09
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	8e-07
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-09
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	2e-07
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	3e-09
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-07
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-09
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-08
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	7e-09
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	2e-07
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	1e-08
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	8e-05
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	1e-08
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-07
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-08
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	7e-07
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	3e-08
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-07
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	3e-06
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	2e-07
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	5e-07
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	6e-05
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	4e-06
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	1e-04
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	6e-04

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 99.4 bits (247), Expect = 2e-25
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 20  GNFTHRPEKLS-----NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQ 73
           G+  H     S        + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 61

Query: 74  KLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVG 133
           +L+F G++L    + + DY +   + LHLVLRL     I V T+ GK     VE    + 
Sbjct: 62  RLIFAGKQLEDGRT-LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 120

Query: 134 YVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183
            VK +I  K  E +    Q LI  G++LED R ++D   + E+ +HL++R
Sbjct: 121 NVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + LH
Sbjct: 106 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKESTLH 164

Query: 102 LVLRL 106
           LVLRL
Sbjct: 165 LVLRL 169

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 98.2 bits (244), Expect = 3e-25
 Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDY 59

Query: 93  GLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQ 152
            +   + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q
Sbjct: 60  NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQ 117

Query: 153 ELICDGEELEDQRLITDICKRNEAVIHLLVR 183
            LI  G++LED R ++D   + E+ +HL++R
Sbjct: 118 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + LH
Sbjct: 86  GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKESTLH 144

Query: 102 LVLRL 106
           LVLRL
Sbjct: 145 LVLRL 149

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 95.8 bits (238), Expect = 3e-24
 Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR-VRDYGLADGNV 99
            G+   + +  S S++ +K +I    G    +Q+L      +A  +   +   GL  G+ 
Sbjct: 11  AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGST 70

Query: 100 LHLV-LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158
           + LV  +  +  +I V    G+   + V   + V ++KQQ++    E V      L  +G
Sbjct: 71  VLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL--EGVQDDLFWLTFEG 128

Query: 159 EELEDQRLITDICKRNEAVIHLLVR 183
           + LEDQ  + +   +  + + + +R
Sbjct: 129 KPLEDQLPLGEYGLKPLSTVFMNLR 153

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 18  FPGNFTHRPEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV 76
            PG+        S++ + I + +  G      V  + ++A +K ++    G       L 
Sbjct: 66  GPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 125

Query: 77  FEGRELARSNSRVRDYGLADGNVLHLVLRL 106
           FEG+ L      + +YGL   + + + LRL
Sbjct: 126 FEGKPLEDQLP-LGEYGLKPLSTVFMNLRL 154

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITD 169
           +TV  + G  F+  +    +V  +K QI +K    V    Q L     G  L+D+  +  
Sbjct: 5   LTVKMLAGNEFQVSLSSSMSVSELKAQITQK--IGVHAFQQRLAVHPSGVALQDRVPLAS 62

Query: 170 ICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIE 202
                 + + L+V KS +  +  V+ +   S  
Sbjct: 63  QGLGPGSTVLLVVDKSDEPLSILVRNNKGRSST 95

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 15/82 (18%), Positives = 38/82 (46%)

Query: 24  HRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELA 83
           H     +   I + +        + V  +++++S+K +I       +K+ +L + G ELA
Sbjct: 6   HHHSHAAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA 65

Query: 84  RSNSRVRDYGLADGNVLHLVLR 105
                + +YG+ + + + + L+
Sbjct: 66  DDYRNLNEYGITEFSEIVVFLK 87

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 98  NVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157
           +  H          +TV     K F   V+R   V  +K +I     E   +K  +L   
Sbjct: 4   HHHHHSHAAVRKIHVTVKF-PSKQFTVEVDRTETVSSLKDKIHIV--ENTPIKRMQLYYS 60

Query: 158 GEELEDQRLITDICK-RNEAVIHLLVRKSAKVR 189
           G EL D     +       + I + ++   + +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 23  THRPEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81
           + R    S  S+LI + ++ G  I + +  +D +  +K R++   G   ++Q+L++ G++
Sbjct: 2   SRRASVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ 61

Query: 82  LARSNSRVRDYGLADGNVLHLVLRL 106
           +    +   DY +  G+VLHLVLRL
Sbjct: 62  MNDEKT-AADYKILGGSVLHLVLRL 85

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK  E  +E    V  +K+++ +K  E +  + Q LI  G+++ D++   D  
Sbjct: 15  IKVKTLTGKEIEIDIEPTDKVERIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYK 72

Query: 172 KRNEAVIHLLVR 183
               +V+HL++R
Sbjct: 73  ILGGSVLHLVLR 84

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 16/78 (20%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
            +  + + + ++ G    ++V E + ++++K  +       V++Q+L+F+G+ LA     
Sbjct: 4   GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKR- 62

Query: 89  VRDYGLADGNVLHLVLRL 106
           + DY +   + L+LV++ 
Sbjct: 63  LSDYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV  + G+     V     V  +KQ +++K    V    Q L+  G+ L D + ++D  
Sbjct: 10  LTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVR--QQRLLFKGKALADGKRLSDYS 67

Query: 172 KRNEAVIHLLVR 183
               + ++L+V+
Sbjct: 68  IGPNSKLNLVVK 79

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 65.0 bits (158), Expect = 1e-12
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
             V P + +  D  ++ + ++   +G   ++  + +             D  L   + L 
Sbjct: 44  ADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRN------SDRILYSSDWLI 97

Query: 102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL 161
                     I V T+ GK     VE    +  VK +I  K     D   Q LI  G++L
Sbjct: 98  YKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ--QRLIFAGKQL 155

Query: 162 EDQRLITDICKRNEAVIHLLVR 183
           ED R ++D   + E+ +HL++R
Sbjct: 156 EDGRTLSDYNIQKESTLHLVLR 177

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 51.9 bits (124), Expect = 4e-08
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 18  FPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF 77
           +  ++            +   ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F
Sbjct: 91  YSSDWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 150

Query: 78  EGRELARSNSRVRDYGLADGNVLHLVLRL 106
            G++L    + + DY +   + LHLVLRL
Sbjct: 151 AGKQLEDGRT-LSDYNIQKESTLHLVLRL 178

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           +    IF  ++ G  I + V  SD+I +VK +IQ   G    +Q+L++ G++L    + +
Sbjct: 7   HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRT-L 65

Query: 90  RDYGLADGNVLHLVLRL---SDLQAITVTTVCGKVFEFHVERGRNVG 133
            DY +   + LHLVLRL   S   A     +  K  E  ++  RN G
Sbjct: 66  SDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESRNSG 112

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 100 LHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159
           +H      + Q I   T+ GK     VE    +  VK +I  K     D   Q LI  G+
Sbjct: 1   MHHHHHHGEFQ-IFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD--QQRLIWAGK 57

Query: 160 ELEDQRLITDICKRNEAVIHLLVR 183
           +LED R ++D   + E+ +HL++R
Sbjct: 58  QLEDGRTLSDYNIQRESTLHLVLR 81

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 5/74 (6%), Positives = 10/74 (13%), Gaps = 2/74 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           +      V        V E   +       +       + +       E           
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKD-ASLV 59

Query: 93  GLADGNVLHLVLRL 106
                     V   
Sbjct: 60  DYVQVRQPIFVAHT 73

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 6/72 (8%), Positives = 16/72 (22%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
            T   V  +     VE    V        +  +   +   +       E  + +  + + 
Sbjct: 3   DTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTE--IKLFNKWSFEEVEVKDASLVD 60

Query: 172 KRNEAVIHLLVR 183
                    +  
Sbjct: 61  YVQVRQPIFVAH 72

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + +  +D +  +K R++   G   ++Q+L++ G+++    +   DY +  G+VLH
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKT-AADYKILGGSVLH 68

Query: 102 LVLRL 106
           LVL L
Sbjct: 69  LVLAL 73

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 51.8 bits (125), Expect = 4e-09
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK  E  +E    V  +K+++ +K  E +  + Q LI  G+++ D++   D  
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 172 KRNEAVIHLLVR 183
               +V+HL++ 
Sbjct: 61  ILGGSVLHLVLA 72

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
            + I + ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 3   HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 61

Query: 92  YGLADGNVLHLVLRL 106
           Y + + + L+L+L+L
Sbjct: 62  YNIHNHSALYLLLKL 76

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ G+     VE    +  VK +I  K     D   Q LI  G++LED R ++D  
Sbjct: 6   IVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYN 63

Query: 172 KRNEAVIHLLVR 183
             N + ++LL++
Sbjct: 64  IHNHSALYLLLK 75

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
            + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 3   HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 61

Query: 92  YGLADGNVLHLVLRL 106
           Y +   + L L+LRL
Sbjct: 62  YNIQKWSTLFLLLRL 76

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K     D   Q LI  G++LED R ++D  
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYN 63

Query: 172 KRNEAVIHLLVR 183
            +  + + LL+R
Sbjct: 64  IQKWSTLFLLLR 75

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 11  VLEESLNFPGNFTHRPEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF 69
           ++EE  +        P   S     + L    G  + + V  +D++  +K R+ +  G  
Sbjct: 1   MIEEKSDIETLDIPEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE 60

Query: 70  VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106
              Q+  F GR L     +  +  +    V+ +++  
Sbjct: 61  PGSQRWFFSGRPLTDKM-KFEELKIPKDYVVQVIVSQ 96

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + +    GK  +  V     V ++K+++     E V+  +Q     G  L D+    ++ 
Sbjct: 26  LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA--EGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 172 KRNEAVIHLLVRK 184
              + V+ ++V +
Sbjct: 84  IPKDYVVQVIVSQ 96

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + +  +D +  +K R++   G   ++Q+L++ G+++    +   DY +  G+VLH
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKT-AADYKILGGSVLH 68

Query: 102 LVLRL 106
           LVL L
Sbjct: 69  LVLAL 73

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK  E  +E    V  +K+++ +K  E +  + Q LI  G+++ D++   D  
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 172 KRNEAVIHLLVR 183
               +V+HL++ 
Sbjct: 61  ILGGSVLHLVLA 72

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 32  DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVR 90
             + +F+ ++ G    + +  SD+I ++K +IQ   G    +Q+L+F G++L    + + 
Sbjct: 8   QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LS 66

Query: 91  DYGLADGNVLHLVLRL 106
           DY +   + LHLVLRL
Sbjct: 67  DYNIQKESTLHLVLRL 82

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 101 HLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160
           H          + + T+ GK F   +E    +  +K +I  K     D   Q LI  G++
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPD--QQRLIFAGKQ 58

Query: 161 LEDQRLITDICKRNEAVIHLLVR 183
           LED R ++D   + E+ +HL++R
Sbjct: 59  LEDGRTLSDYNIQKESTLHLVLR 81

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 62.3 bits (151), Expect = 7e-12
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 17/152 (11%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR-VRDYGLADGNVL 100
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L   + R + DY +   + L
Sbjct: 10  GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL--EDGRTLSDYNIQKESTL 67

Query: 101 HLVLRLSDLQAITVTTVCGKV---FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157
           HLVLRL      T+  V           ++   ++ + +  I  +  + VD     L   
Sbjct: 68  HLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-----LTFG 122

Query: 158 GEELEDQRLITDICKR------NEAVIHLLVR 183
            + L D    + +  R      +EA       
Sbjct: 123 AKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 154

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 60.6 bits (147), Expect = 7e-12
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 13  EESLNFPGNFTHRPEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK 71
            + L    N     E     ++ IF+ ++ G  I + V  SD+I +VK +IQ   G    
Sbjct: 15  GDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 74

Query: 72  KQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106
           +Q+L+F G++L    + + DY +   + LHLVLRL
Sbjct: 75  QQRLIFAGKQLEDGRT-LSDYNIQKESTLHLVLRL 108

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I    +E +    Q LI  G++LED R ++D  
Sbjct: 38  IFVKTLTGKTITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRTLSDYN 95

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 96  IQKESTLHLVLR 107

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY
Sbjct: 2   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDY 60

Query: 93  GLADGNVLHLVLRL 106
            +   + LHLVLRL
Sbjct: 61  NIQKESTLHLVLRL 74

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K     D   Q LI  G++LED R ++D  
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYN 61

Query: 172 KRNEAVIHLLVRK--SAKVRAKPVQKD 196
            + E+ +HL++R    A +R  P ++D
Sbjct: 62  IQKESTLHLVLRLRGYADLREDPDRQD 88

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDY 59

Query: 93  GLADGNVLHLVLRL 106
            +   + LHLVLRL
Sbjct: 60  NIQKESTLHLVLRL 73

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I    +E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  +   +  +D ++ +K++I    G    KQKL +EG  +  SNS +  Y +A G V+H
Sbjct: 45  GQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNS-LAYYNMASGAVIH 103

Query: 102 LVLRL 106
           L L+ 
Sbjct: 104 LALKE 108

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 100 LHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159
           + + +++ ++Q  T   + G+   F +     V  +K +I +     +    Q+L  +G 
Sbjct: 26  VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA--TGMPAGKQKLQYEGI 83

Query: 160 ELEDQRLITDICKRNEAVIHLLVR 183
            ++D   +      + AVIHL ++
Sbjct: 84  FIKDSNSLAYYNMASGAVIHLALK 107

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
               P+ V    SI  +K  +    G    + +++F G+EL    + V++  L   +++H
Sbjct: 10  SYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLT-VQNCDLEQQSIVH 68

Query: 102 LVLRL 106
           +V R 
Sbjct: 69  IVQRP 73

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V       F   V+   ++  +K+ +AK+  + V      +I  G+EL +   + +  
Sbjct: 3   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ--QGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 172 KRNEAVIHLLVR 183
              ++++H++ R
Sbjct: 61  LEQQSIVHIVQR 72

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           ++ + I + +  G      V  + ++A +K ++    G       L FEG+ L      +
Sbjct: 2   DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLP-L 60

Query: 90  RDYGLADGNVLHLVLRL 106
            +YGL   + + + LRL
Sbjct: 61  GEYGLKPLSTVFMNLRL 77

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V    G+   + V   + V ++KQQ++    E V      L  +G+ LEDQ  + +  
Sbjct: 7   ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL--EGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 172 KRNEAVIHLLVR 183
            +  + + + +R
Sbjct: 65  LKPLSTVFMNLR 76

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 57.3 bits (139), Expect = 5e-11
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 26  PEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELAR 84
                +  +   + ++ GS   + V   D++  VK +I+      V KQ L+ +G  + R
Sbjct: 3   HHHHHHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR 62

Query: 85  SNSRVRDYGLADGNVLHLVL 104
            +  V    +   + + L +
Sbjct: 63  EDLTVEQCQIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-EELEDQRLITDI 170
             V  + G  FE  V+    +  VKQ+I +   + + +  Q LI DG   L +   +   
Sbjct: 13  FLVENLNGSSFELEVDYRDTLLVVKQKIERS--QHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 171 CKRNEAVIHLLV 182
                + I L V
Sbjct: 71  QIVPTSDIQLEV 82

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDY 59

Query: 93  GLADGNVLHLVLRL 106
            +   + LHLVLRL
Sbjct: 60  NIQRESTLHLVLRL 73

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQRESTLHLVLR 72

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 44  VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103
                +     +  ++ +IQ         Q+L + G+++      + DY +   + + L+
Sbjct: 16  HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQM-EDGHTLFDYEVRLNDTIQLL 74

Query: 104 LRLS 107
           +R S
Sbjct: 75  VRQS 78

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 112 ITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITD 169
           I V T+ G+       + R   V  ++++I +          Q L   G+++ED   + D
Sbjct: 5   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPG--LQRLFYRGKQMEDGHTLFD 62

Query: 170 ICKRNEAVIHLLVRKS 185
              R    I LLVR+S
Sbjct: 63  YEVRLNDTIQLLVRQS 78

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 57.1 bits (138), Expect = 8e-11
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 23  THRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82
            H    +   S+ +F+     +    V   +++A +K  + S  G   + Q ++  G  L
Sbjct: 9   HHSSGLVPRGSMQLFVR-AQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPL 67

Query: 83  ARSNSRVRDYGLADGNVLHLVLRL 106
               + +   G+     L +  R+
Sbjct: 68  -EDEATLGQCGVEALTTLEVAGRM 90

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V     ++  F V     V  +K  +A       +  +Q ++  G  LED+  +    
Sbjct: 22  LFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPE--DQVVLLAGAPLEDEATLGQCG 77

Query: 172 KRNEAVIHLLVR 183
                 + +  R
Sbjct: 78  VEALTTLEVAGR 89

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 57.0 bits (138), Expect = 8e-11
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
            +  I +F+ +  G      +  +  I  +K +I+   G   K+Q+L F+G+ L      
Sbjct: 4   GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLG- 62

Query: 89  VRDYGLADGNVLHLVLRL 106
           +  YG+ D + L L  + 
Sbjct: 63  LGIYGIQDSDTLILSKKK 80

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V    G  + + +     +  +KQQI  +         Q+L   G+ L+D   +    
Sbjct: 10  VFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKK--QQQLEFQGQVLQDWLGLGIYG 67

Query: 172 KRNEAVIHLLVR 183
            ++   + L  +
Sbjct: 68  IQDSDTLILSKK 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           ++ + I + +  G      V  + ++A +K ++    G       L FEG+ L      +
Sbjct: 2   DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQL-PL 60

Query: 90  RDYGLADGNVLHLVLRL 106
            +YGL   + + + LRL
Sbjct: 61  GEYGLKPLSTVFMNLRL 77

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V    G+   + V   + V ++KQQ++       D     L  +G+ LEDQ  + +  
Sbjct: 7   ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD--LFWLTFEGKPLEDQLPLGEYG 64

Query: 172 KRNEAVIHLLVR 183
            +  + + + +R
Sbjct: 65  LKPLSTVFMNLR 76

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 30  SNDSILIF---LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN 86
            +  + I    +    +     V    +I  ++ R+ +      + Q+L + G++L    
Sbjct: 4   GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGY 63

Query: 87  SRVRDYGLADGNVLHLVLRL 106
           + + DY +   +++ L++R 
Sbjct: 64  T-LFDYDVGLNDIIQLLVRP 82

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 112 ITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITD 169
           I V T+ G        V R   +  +++++       V  + Q L   G++LE+   + D
Sbjct: 10  IQVRTIDGSKTCTIEDVSRKATIEELRERVWAL--FDVRPECQRLFYRGKQLENGYTLFD 67

Query: 170 ICKRNEAVIHLLVR 183
                  +I LLVR
Sbjct: 68  YDVGLNDIIQLLVR 81

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 33  SILIFLSVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
            +       G  + + V   S+++ S+K +I         KQKL  +   L  + S +  
Sbjct: 31  RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMS-LAH 89

Query: 92  YGLADGNVLHLVLRL 106
           Y +  G +L L LR 
Sbjct: 90  YNVGAGEILTLSLRE 104

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 34  ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYG 93
           + I +  G     + V    ++   K  I   NG  V  Q+L++ G+ L + +  V  Y 
Sbjct: 29  LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVESYH 87

Query: 94  LADGNVLHLVLR 105
           + DG+ +HLV  
Sbjct: 88  IQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 91  DYGLADGNVLHLVLRLSDLQAITVTTVCGKV-FEFHVERGRNVGYVKQQIAKKGREFVDL 149
           DY +     L+    +S    + +    G+  +E +V     V   K+ I K     + +
Sbjct: 12  DYDIPTTENLYFQGAMS----LNIHIKSGQDKWEVNVAPESTVLQFKEAINKA--NGIPV 65

Query: 150 KNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184
            NQ LI  G+ L+D + +     ++   +HL+  +
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 24  HRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELA 83
           H     S+ +I + +  GG  IP+ V    ++  +K ++Q       + QKL+F+G+ L 
Sbjct: 3   HHHHHHSHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV 62

Query: 84  RSNSRVRDYGLADGNVLHLV 103
              S ++   +  G  L L+
Sbjct: 63  -ETSTLKQSDVGSGAKLMLM 81

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 33  SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           S+ I +  G     + V    ++   K  I   NG  V  Q+L++ G+ L + +  V  Y
Sbjct: 4   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVESY 62

Query: 93  GLADGNVLHLVLR 105
            + DG+ +HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 112 ITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI 170
           + +    G+  +E +V     V   K+ I K     + + NQ LI  G+ L+D + +   
Sbjct: 5   LNIHIKSGQDKWEVNVAPESTVLQFKEAINKA--NGIPVANQRLIYSGKILKDDQTVESY 62

Query: 171 CKRNEAVIHLLVRK 184
             ++   +HL+  +
Sbjct: 63  HIQDGHSVHLVKSQ 76

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
             DS+ + + ++        V    ++   K  I +      +KQ+L+++GR L      
Sbjct: 2   EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKK- 60

Query: 89  VRDYGLADGNVLHLVLRL 106
           +++Y +  G V+HLV R 
Sbjct: 61  LQEYNV-GGKVIHLVERA 77

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V T+  +   F V    NV   K+ IA      +  + Q LI  G  L+D + + +  
Sbjct: 8   VLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQE-Y 64

Query: 172 KRNEAVIHLLVRK 184
                VIHL+ R 
Sbjct: 65  NVGGKVIHLVERA 77

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 53.8 bits (130), Expect = 9e-10
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 26  PEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELAR 84
                 DS+ + + ++        V    ++   K  I +      +KQ+L+++GR L  
Sbjct: 10  TAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 69

Query: 85  SNSRVRDYGLADGNVLHLVLR 105
               +++Y +  G V+HLV R
Sbjct: 70  DKK-LQEYNV-GGKVIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V T+  +   F V    NV   K+ IA      +  + Q LI  G  L+D + + +  
Sbjct: 20  VLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQE-Y 76

Query: 172 KRNEAVIHLLVR 183
                VIHL+ R
Sbjct: 77  NVGGKVIHLVER 88

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 23  THRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82
           +    + S   I + +          V ++ +I  +K  I         +  L+F G+ L
Sbjct: 12  SGLVPRGSPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKIL 71

Query: 83  ARSNSRVRDYGLADGNVLHLVLR 105
              +S +   G+ DG  +HLV++
Sbjct: 72  KDPDS-LAQCGVRDGLTVHLVIK 93

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  +F V     +  +K++I+++           LI  G+ L+D   +    
Sbjct: 25  VTVKTPKDK-EDFSVTDTCTIQQLKEEISQR--FKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 172 KRNEAVIHLLVRKSAK 187
            R+   +HL++++  +
Sbjct: 82  VRDGLTVHLVIKRQHR 97

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 30  SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
               I + +          V E+ S+   K  I         +  L+F G+ L +    +
Sbjct: 29  EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKIL-KDQDTL 87

Query: 90  RDYGLADGNVLHLVLR 105
             +G+ DG  +HLV++
Sbjct: 88  IQHGIHDGLTVHLVIK 103

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  EF V    +V   K+ I+K+           LI  G+ L+DQ  +    
Sbjct: 35  VTVKTPKEK-EEFAVPENSSVQQFKEAISKR--FKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 172 KRNEAVIHLLVRKSAKVRAKP 192
             +   +HL++++     +  
Sbjct: 92  IHDGLTVHLVIKRDPNSSSVD 112

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 23  THRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82
            +   +     + + +          V E+ S+   K  I         +  L+F G+ L
Sbjct: 15  ENLYFQGHPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKIL 74

Query: 83  ARSNSRVRDYGLADGNVLHLVLR 105
              ++ +  +G+ DG  +HLV++
Sbjct: 75  KDQDT-LSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  EF V    +V   K++I+K+           LI  G+ L+DQ  ++   
Sbjct: 28  VTVKTPKEK-EEFAVPENSSVQQFKEEISKR--FKSHTDQLVLIFAGKILKDQDTLSQHG 84

Query: 172 KRNEAVIHLLVRKSAK 187
             +   +HL+++   +
Sbjct: 85  IHDGLTVHLVIKTQNR 100

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 27  EKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN 86
            + S+  I + +          + E+ ++   K +I  Y      +  L+F G+ L R  
Sbjct: 11  REPSSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKIL-RDQ 69

Query: 87  SRVRDYGLADGNVLHLVLRL 106
             +   G+ DG+ +H+V+R 
Sbjct: 70  DILSQRGILDGSTVHVVVRS 89

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           ++V T      EF +    NV   K+QI+K      +     LI  G+ L DQ +++   
Sbjct: 20  VSVKTPQDC-HEFFLAENSNVRRFKKQISKY--LHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 172 KRNEAVIHLLVRKSAKVRA 190
             + + +H++VR  +   +
Sbjct: 77  ILDGSTVHVVVRSHSGPSS 95

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 51.5 bits (124), Expect = 6e-09
 Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIA-KKGREFVDLKNQELICDGEELEDQRLITDI 170
           +T+ T+  + F+  ++    V  +K++I  +KG++   +  Q+LI  G+ L D   + + 
Sbjct: 3   VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62

Query: 171 CKRNEAVIHLLVRKSAKV 188
               +  + ++V K   V
Sbjct: 63  KIDEKNFVVVMVTKPKAV 80

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
                + +   +++ ++K +I+S  G   F V  QKL++ G+ L    + +++Y + + N
Sbjct: 10  QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA-LKEYKIDEKN 68

Query: 99  VLHLVLRL 106
            + +++  
Sbjct: 69  FVVVMVTK 76

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 26  PEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARS 85
                   I + +          V ++ +I  +K  I         +  L+F G+ L + 
Sbjct: 10  APVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKIL-KD 68

Query: 86  NSRVRDYGLADGNVLHLVLRL 106
              +   G+ DG  +HLV++ 
Sbjct: 69  PDSLAQCGVRDGLTVHLVIKR 89

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  +F V     +  +K++I+++           LI  G+ L+D   +    
Sbjct: 20  VTVKTPKDK-EDFSVTDTCTIQQLKEEISQR--FKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 172 KRNEAVIHLLVRKSAKVRAKPVQ 194
            R+   +HL++++  +       
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECP 99

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 54.4 bits (130), Expect = 1e-08
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 21  NFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80
                   ++    +   ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G+
Sbjct: 222 LEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 281

Query: 81  ELARSNSR-VRDYGLADGNVLHLVLRL 106
           +L   + R + DY +   + LHLVLRL
Sbjct: 282 QL--EDGRTLSDYNIQKESTLHLVLRL 306

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-----RELARSNSRVRDYGLA 95
            G  +  ++  +    SV+L         +    ++         + A S          
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 96  DGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155
                     ++    I V T+ GK     VE    +  VK +I  K  E +    Q LI
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRLI 277

Query: 156 CDGEELEDQRLITDICKRNEAVIHLLVR 183
             G++LED R ++D   + E+ +HL++R
Sbjct: 278 FAGKQLEDGRTLSDYNIQKESTLHLVLR 305

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIA-KKGREFVDLKNQELICDGEELEDQRLITDI 170
           IT+ T+  + F+  +E    V  +K++I  +KGR+   +  Q+LI  G+ L D   I D 
Sbjct: 8   ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67

Query: 171 CKRNEAVIHLLVRK 184
               +  + ++V K
Sbjct: 68  RIDEKNFVVVMVTK 81

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 16/77 (20%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLVFEGRELARSNSR 88
           ++ I L ++      +R+   +++  +K +I++  G     V  QKL++ G+ L+     
Sbjct: 5   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP- 63

Query: 89  VRDYGLADGNVLHLVLR 105
           +RDY + + N + +++ 
Sbjct: 64  IRDYRIDEKNFVVVMVT 80

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
              +P+ +  S++I   K ++         + KL++ G+ L  S + V + GL DG+ + 
Sbjct: 11  KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKT-VSECGLKDGDQVV 69

Query: 102 LVLR 105
            ++ 
Sbjct: 70  FMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +T      +     +E    +   K ++A+      +    +LI  G+ L+D + +++  
Sbjct: 4   LTFKNFKKEKVPLDLEPSNTILETKTKLAQS--ISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 172 KRNEAVIHLLVRKSAKVRAKP 192
            ++   +  +V +    + K 
Sbjct: 62  LKDGDQVVFMVSQKKSTKTKV 82

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V T+ G+   + +E+G +V  +K QI++      ++    L+ +G    +  L+TD  
Sbjct: 3   VQVKTLEGETKIYTLEQGTSVLDLKSQISQD--MGFEIDMMTLVNNGFIAPNTELVTD-- 58

Query: 172 KRNEAVIHLLVR 183
              +   +L ++
Sbjct: 59  ---DVTYYLSLK 67

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 51.7 bits (123), Expect = 4e-08
 Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 7/120 (5%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           + + ++ G      + +  S+  +K +I    GF +    LV  G              +
Sbjct: 3   VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP------NTELV 56

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
            D    +L L+L   +            +                  +    V L+ +  
Sbjct: 57  TDDVTYYLSLKLLGGKKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQKGC 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 5e-08
 Identities = 47/317 (14%), Positives = 101/317 (31%), Gaps = 100/317 (31%)

Query: 74  KLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK----VFEFHVERG 129
           K +    E+        D+ +   + +   LRL         T+  K    V +F VE  
Sbjct: 43  KSILSKEEI--------DHIIMSKDAVSGTLRL-------FWTLLSKQEEMVQKF-VEEV 86

Query: 130 --RNVGYVKQQIAKKGRE-------FVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
              N  ++   I  + R+       +++ +++  + +  ++  +  ++    R +  + L
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVS----RLQPYLKL 140

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKG-------ADVVGEHQFETLF--------MG 225
             R++     +P +    V I+       G        DV   ++ +           + 
Sbjct: 141 --RQALL-ELRPAKN---VLIDGV----LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 226 YQIRERKLL--QNDLL--LEPLIVE-----SNFKLPL-----MIKRLISSTVDGLERGL- 270
                  +L     LL  ++P         SN KL +      ++RL+ S     E  L 
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLL 248

Query: 271 -----------TPFDIGCIMCRKTL---KDESVIEQI-----VREAQDAVLPGTSEDGFL 311
                        F++ C    K L   + + V + +        + D      + D   
Sbjct: 249 VLLNVQNAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 312 ESVASIMDRHLDDLTPQ 328
             +   +D    DL  +
Sbjct: 305 SLLLKYLDCRPQDLPRE 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 45/344 (13%), Positives = 92/344 (26%), Gaps = 93/344 (27%)

Query: 34  ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELAR---SNSRVR 90
               LS    ++   V E            +Y  F +   K       +        R R
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLR--------INY-KFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 91  DYG----LADGNV----LHLVLR--LSDLQAITVTTV-----CGK------V---FEFHV 126
            Y      A  NV     +L LR  L +L+      +      GK      V   ++   
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 127 ERGRNVGYVKQQIAKKGREFVDLKNQELIC-----DGEELEDQ--RLITDICKRNEAVIH 179
           +    + ++   +         L+  + +      +     D    +   I      +  
Sbjct: 179 KMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 180 LLVRKSAK--------VRAKPVQKDFEVS--IEATELNEKGADVVGEHQFETLFMGYQIR 229
           LL  K  +        V+       F +S  I  T   ++  D +       + +     
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL---DH 293

Query: 230 ERKLLQNDLLLEPL---IVESNFKLPLMIKRLISSTVDGLERGLTPFDIGCIMCRKTLKD 286
               L  D +   L   +      LP  +    +           P  +   +  ++++D
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TN-----------PRRLS--IIAESIRD 339

Query: 287 ESVIEQIVREAQDAVLPGTSE---DGFLESVASIMDRHLDDLTP 327
                             T +       + + +I++  L+ L P
Sbjct: 340 G---------------LATWDNWKHVNCDKLTTIIESSLNVLEP 368

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L      + DY +   + LH
Sbjct: 10  GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLH 68

Query: 102 LVLR 105
           LVLR
Sbjct: 69  LVLR 72

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K     D   Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIH 179
            + E+ +H
Sbjct: 61  IQKESTLH 68

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 10/66 (15%), Positives = 32/66 (48%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
                 ++V     +++ ++  +  +G   ++ ++V+  + L   +  +  YGL DG+++
Sbjct: 20  TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMV 79

Query: 101 HLVLRL 106
            L+ + 
Sbjct: 80  VLLQKD 85

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 50.0 bits (118), Expect = 5e-07
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIA-KKGREFVDLKNQELICDGEELEDQRLITDI 170
           IT+ T+  + F+  +E    V  +K++I  +KGR+   +  Q+LI  G+ L D   I D 
Sbjct: 10  ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69

Query: 171 CKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEAT 204
               +  + ++V K+   +      +   +    
Sbjct: 70  RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPE 103

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 43.4 bits (101), Expect = 6e-05
 Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 29  LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLVFEGRELAR 84
           L + ++ I L ++      +R+   +++  +K +I++  G     V  QKL++ G+ L+ 
Sbjct: 3   LGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD 62

Query: 85  SNSRVRDYGLADGNVLHLVLRLSDLQAIT 113
               +RDY + + N + +++  +     T
Sbjct: 63  DVP-IRDYRIDEKNFVVVMVTKTKAGQGT 90

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 12/78 (15%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 26  PEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARS 85
              +  + + + +    +   ++V    + + +K +I S  G     QK++++G  L   
Sbjct: 10  GGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKG--LVPE 67

Query: 86  NSRVRDYGLADGNVLHLV 103
           +  +R+  +  G  + +V
Sbjct: 68  DKTLREIKVTSGAKIMVV 85

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 35  LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQK---------------LVFEG 79
           +    + G V+P+ V+++ ++  +K  IQ Y     +++                L   G
Sbjct: 10  VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 69

Query: 80  RELARSNSRVRDYGLADGNVLHLVLRLSD 108
            +L     ++RDYG+ + + +  + +L  
Sbjct: 70  EKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEA--VIH 179
            E   +RG +VG++K  +++   E    ++Q LI  G+ L D + + D+  + E   V+H
Sbjct: 22  LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLH 81

Query: 180 LLVRKSA 186
           L+    +
Sbjct: 82  LVCNVKS 88

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 48  RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105
                D++ ++K +          + KL+++GR L      +    + +  V+H    
Sbjct: 23  VARPEDTVGTLKSKYFPGQE---SQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.94
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.94
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.92
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.78
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.75
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.74
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.73
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.71
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.7
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.7
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.7
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.7
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.69
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.69
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.68
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.68
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.68
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.68
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.68
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.67
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.67
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.67
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.67
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.67
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.67
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.66
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.66
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.66
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.66
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.66
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.66
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.66
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.65
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.65
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.65
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.65
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.65
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.65
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.65
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.65
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.65
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.65
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.65
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.64
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.64
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.64
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.64
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.64
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.63
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.63
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.63
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.63
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.63
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.63
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.62
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.62
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.62
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.62
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.62
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.62
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.61
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.61
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.61
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.61
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.61
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.61
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.61
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.61
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.61
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.4
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.61
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.6
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.6
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.6
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.6
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.6
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.59
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.59
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.59
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.59
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.59
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.59
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.59
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.59
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.59
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.58
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.58
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.58
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.58
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.57
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.57
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.57
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.57
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.56
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.56
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.56
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.55
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.55
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.55
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.55
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.32
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.55
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.55
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.54
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.54
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.54
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.54
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.54
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.53
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.53
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.53
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.52
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.52
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.52
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.52
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.51
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.51
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.51
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.51
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.5
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.5
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.49
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.49
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.49
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.49
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.48
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.48
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.48
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.47
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.47
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.47
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.46
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.46
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.46
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.45
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.45
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.45
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.44
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.44
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.43
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.43
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.4
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.4
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.4
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.4
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.39
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.38
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.38
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.36
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.36
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.35
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.34
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.31
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.31
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.3
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.29
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.28
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.27
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.27
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.26
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.25
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.22
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.2
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.19
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.16
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.15
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.15
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.07
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.07
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.04
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.04
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.02
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.01
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.01
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.0
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.98
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.98
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	98.97
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.96
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	98.95
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	98.94
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.86
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.52
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.48
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.4
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.39
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.34
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.18
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.09
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.02
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.01
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.96
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.91
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.9
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.88
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	97.87
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.73
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.64
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.64
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.49
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.43
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.4
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.26
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.23
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.19
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.1
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.09
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.01
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	96.91
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	96.82
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	96.73
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	96.48
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	96.3
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.19
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	95.94
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	95.73
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	95.47
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	95.37
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.19
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	94.86
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	94.82
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	94.73
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	94.16
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	93.98
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	93.96
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	93.88
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	93.8
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	93.6
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	93.36
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	93.36
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	92.57
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	92.55
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	91.41
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	91.13
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	90.75
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	90.51
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	89.97
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	89.87
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	89.85
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	87.9
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	86.14
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	84.14
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	83.55
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	83.19
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	82.99
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	82.8
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	82.67
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	82.23
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	82.22

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=4e-35  Score=257.60  Aligned_cols=159  Identities=32%  Similarity=0.483  Sum_probs=145.6

Q ss_pred             CCCCCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceee
Q 019968           24 HRPEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        24 ~~~~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      .+.++.+...|+|+|+ ++|++++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|
T Consensus        11 ~~~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l   89 (172)
T 3u30_A           11 SSGLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHL   89 (172)
T ss_dssp             --------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEE
T ss_pred             CCCCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeee
Confidence            3444556788999995 89999999999999999999999999999999999999999998 999999999999999999


Q ss_pred             eeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          103 VLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       103 v~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      +++..++|+|+|++.+|++++++|++++||.+||++|++++|+|  +++|+|+|+|++|+|+.+|++|+|++|++|||++
T Consensus        90 ~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~  167 (172)
T 3u30_A           90 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL  167 (172)
T ss_dssp             EECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred             eecccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCC--ceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence            99999999999999999999999999999999999999999999  9999999999999999999999999999999998


Q ss_pred             ecC
Q 019968          183 RKS  185 (333)
Q Consensus       183 r~~  185 (333)
                      |+.
T Consensus       168 rlr  170 (172)
T 3u30_A          168 RLR  170 (172)
T ss_dssp             ---
T ss_pred             ecC
Confidence            864

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=2e-34  Score=249.48  Aligned_cols=151  Identities=20%  Similarity=0.230  Sum_probs=144.7

Q ss_pred             cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE-E-CCeecccCCccccccccccccceeeeee-ccc
Q 019968           33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-F-EGRELARSNSRVRDYGLADGNVLHLVLR-LSD  108 (333)
Q Consensus        33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li-f-~G~~L~~D~~tL~dygI~~gstV~Lv~r-lsd  108 (333)
                      .|+|+|+ ++|++++++|++++||.+||.+|+..+|+|+++|+|+ | +|+.|. |+.+|++|+|++|++|+|+++ +++
T Consensus         2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~-d~~tL~~y~i~~~~~l~l~~~~~~~   80 (159)
T 3rt3_B            2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDKSDE   80 (159)
T ss_dssp             -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-TTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred             ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCC-CCCCHHHcCCCCCCEEEEEccCCCC
Confidence            4899995 8999999999999999999999999999999999999 9 799997 999999999999999999999 689


Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      +|+|+|++.+|++++++|++++||++||++|++++|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||++|+..
T Consensus        81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~G  156 (159)
T 3rt3_B           81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG  156 (159)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC--HHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            99999999999999999999999999999999999999  99999999999999999999999999999999998653

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=3.5e-32  Score=231.90  Aligned_cols=149  Identities=34%  Similarity=0.533  Sum_probs=144.7

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccccce
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI  112 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m~I  112 (333)
                      |+|+|+ ++|+.+++++++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++++++.+..++|+|
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~~~~~~~i   79 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGMQI   79 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECc-CcccHHHhccCCCCeeEEEeecccccce
Confidence            789995 78999999999999999999999999999999999999999998 9999999999999999999999999999


Q ss_pred             eEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       113 ~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +|++.+|+++.++|++++||++||.+|+++.|+|  +++|+|+|+|+.|+|+.+|++|++++|++|||++|+.
T Consensus        80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~  150 (152)
T 3b08_A           80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  150 (152)
T ss_dssp             EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred             eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            9999999999999999999999999999999999  9999999999999999999999999999999998864

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.94  E-value=8.5e-27  Score=201.51  Aligned_cols=139  Identities=19%  Similarity=0.173  Sum_probs=123.6

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE-E-CCeecCCCCcccccCCCCCCEEEEEee-cC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-C-DGEELEDQRLITDICKRNEAVIHLLVR-KS  185 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi-f-~Gk~LeD~~tL~dy~I~~gsvIhLv~r-~~  185 (333)
                      .|+|+|++.+|++++++|++++||++||++|++.+|+|  +++|+|+ | +|+.|+|+.+|++|+|.+|++|||+++ .+
T Consensus         2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~   79 (159)
T 3rt3_B            2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSD   79 (159)
T ss_dssp             -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCC--GGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCC
T ss_pred             ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--HHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCC
Confidence            38899999999999999999999999999999999999  9999999 9 899999999999999999999999998 34


Q ss_pred             C----ccccccCCceEEEEEeecccccc------CCCCCCCCceEEEeeceeccccccccccccce-----eeecccCCC
Q 019968          186 A----KVRAKPVQKDFEVSIEATELNEK------GADVVGEHQFETLFMGYQIRERKLLQNDLLLE-----PLIVESNFK  250 (333)
Q Consensus       186 ~----~v~t~~~gk~~~l~v~~~d~~~~------~~~gi~~~~q~Lif~Gk~L~d~~~l~~d~~i~-----~l~~~~~~~  250 (333)
                      .    .|++.. |++++++|.+++++..      .++|+|+++|+|+|+|+.|+|+++++ ||+|+     ||+++.+||
T Consensus        80 ~~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~-~y~i~~g~~l~l~~rl~GG  157 (159)
T 3rt3_B           80 EPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLG-EYGLKPLSTVFMNLRLRGG  157 (159)
T ss_dssp             CCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGG-GGTCCTTCEEEEEECCC--
T ss_pred             CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHH-HcCCCCCCEEEEEEecCCC
Confidence            3    345554 8999999999999653      35799999999999999999999999 99976     899999887


Q ss_pred             C
Q 019968          251 L  251 (333)
Q Consensus       251 ~  251 (333)
                      .
T Consensus       158 ~  158 (159)
T 3rt3_B          158 G  158 (159)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=203.43  Aligned_cols=139  Identities=25%  Similarity=0.358  Sum_probs=122.8

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC-
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA-  186 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~-  186 (333)
                      ..|+|+|++.+|++++++|++++||.+||++|++++|+|  +++|+|+|+|+.|+|+.+|++|+|.++++|||+++... 
T Consensus        19 ~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg   96 (172)
T 3u30_A           19 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   96 (172)
T ss_dssp             CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence            469999999999999999999999999999999999999  99999999999999999999999999999999998764 


Q ss_pred             ---ccccccCCceEEEEEeecccccc------CCCCCCCCceEEEeeceeccccccccccccce-----eeecccCCC
Q 019968          187 ---KVRAKPVQKDFEVSIEATELNEK------GADVVGEHQFETLFMGYQIRERKLLQNDLLLE-----PLIVESNFK  250 (333)
Q Consensus       187 ---~v~t~~~gk~~~l~v~~~d~~~~------~~~gi~~~~q~Lif~Gk~L~d~~~l~~d~~i~-----~l~~~~~~~  250 (333)
                         .|++.. |+++++.|.+++++..      .++|+|+++|+|+|+|++|+|+++|+ ||+|+     ||++|.+||
T Consensus        97 ~~i~Vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~-~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A           97 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS-DYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEEEEEESS-CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSG-GGTCCTTCEEEECC-----
T ss_pred             ccceeeccc-CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHH-HhCCCCCCEEEEEEecCCC
Confidence               355555 8999999999998643      34699999999999999999999999 99976     888888875

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.92  E-value=1.3e-24  Score=185.01  Aligned_cols=137  Identities=26%  Similarity=0.367  Sum_probs=123.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC---
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA---  186 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~---  186 (333)
                      |+|+|++.+|++++++|++++||++||++|++..|+|  +++|+|+|+|+.|+|+.+|++|++.+|++||++.+...   
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip--~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~   78 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ   78 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccc
Confidence            7899999999999999999999999999999999999  99999999999999999999999999999999998654   


Q ss_pred             -ccccccCCceEEEEEeecccccc------CCCCCCCCceEEEeeceeccccccccccccce-----eeecccCCC
Q 019968          187 -KVRAKPVQKDFEVSIEATELNEK------GADVVGEHQFETLFMGYQIRERKLLQNDLLLE-----PLIVESNFK  250 (333)
Q Consensus       187 -~v~t~~~gk~~~l~v~~~d~~~~------~~~gi~~~~q~Lif~Gk~L~d~~~l~~d~~i~-----~l~~~~~~~  250 (333)
                       .|++.. |+.+++.+.+++++..      .+.|+|+++|+|+|+|+.|+|++++. ||.|.     ||+++.+||
T Consensus        79 i~Vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~-~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           79 IFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS-DYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEEEESS-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTG-GGTCCTTCEEEEEECCCC-
T ss_pred             eeeeecC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHH-HcCCCCCCEEEEEEecCCC
Confidence             344444 8899999999888643      34699999999999999999999999 99975     888888875

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.78  E-value=6.5e-19  Score=137.63  Aligned_cols=88  Identities=25%  Similarity=0.282  Sum_probs=72.2

Q ss_pred             ccccccceeeeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCC
Q 019968           93 GLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK  172 (333)
Q Consensus        93 gI~~gstV~Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I  172 (333)
                      |+.+++++++..+.+..|+|+|++.+|+++.++|++++||++||++|++++|+|  +++|+|+|+|+.|+|+.+|++|+|
T Consensus         1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i   78 (88)
T 4eew_A            1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV   78 (88)
T ss_dssp             --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC
T ss_pred             CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCcHHHcCC
Confidence            456788999999999999999999999999999999999999999999999999  999999999999999999999999


Q ss_pred             CCCCEEEEEee
Q 019968          173 RNEAVIHLLVR  183 (333)
Q Consensus       173 ~~gsvIhLv~r  183 (333)
                       +|++|||++|
T Consensus        79 -~g~~i~lv~R   88 (88)
T 4eew_A           79 -GGKVIHLVER   88 (88)
T ss_dssp             -TTEEEEEEEC
T ss_pred             -CCcEEEEEEC
Confidence             8999999876

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.75  E-value=3.8e-18  Score=135.89  Aligned_cols=78  Identities=21%  Similarity=0.181  Sum_probs=70.5

Q ss_pred             eeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       102 Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      |+...+..|+|+|++.+|++++++|++++||.+||++|++++|+|  +++|||+|+|+.|+|..||+||+|++|++|||.
T Consensus        14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            445566789999999999999999999999999999999999999  999999999999999999999999999999985

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.74  E-value=5.8e-18  Score=129.50  Aligned_cols=75  Identities=20%  Similarity=0.171  Sum_probs=72.7

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      ..|+|+|++.+|++++++|++++||++||++|++++|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||++|+
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl   77 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   77 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC--HHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence            569999999999999999999999999999999999999  999999999999999999999999999999999985

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.73  E-value=4.8e-19  Score=146.10  Aligned_cols=103  Identities=30%  Similarity=0.488  Sum_probs=97.1

Q ss_pred             CCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        31 ~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ....+|+| +++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.++.++
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~~~~GG   85 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG   85 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            34689999 589999999999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             cceeEe---eeCCcEEEEEEecCCchHH
Q 019968          110 QAITVT---TVCGKVFEFHVERGRNVGY  134 (333)
Q Consensus       110 m~I~Vk---t~~Gk~~~l~V~~sdTV~~  134 (333)
                      ++++++   +.+|++++++|++++||..
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           86 SMGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             ceeeccccccccCceEEEEeccccccCC
Confidence            999998   7789999999999999864

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=2.9e-17  Score=125.11  Aligned_cols=76  Identities=26%  Similarity=0.253  Sum_probs=71.7

Q ss_pred             cccceeEeeeCCcEE-EEE-EecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVF-EFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~-~l~-V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +.|+|+|++.+|+++ +++ |++++||++||++|++..|+|  +++|+|+|+|+.|+|+.+|++|++++|++|||++|++
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~   78 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS   78 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            368999999999985 999 999999999999999999999  9999999999999999999999999999999999864

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.70  E-value=5.1e-17  Score=127.32  Aligned_cols=78  Identities=27%  Similarity=0.296  Sum_probs=73.3

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      +..|+|+|++.+|+++.++|++++||.+||++|++++|+|  +++|+|+|+|+.|+|+.+|++|+| +|++|||+++.+.
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~   79 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP   79 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence            3569999999999999999999999999999999999999  999999999999999999999999 8999999999765


Q ss_pred             c
Q 019968          187 K  187 (333)
Q Consensus       187 ~  187 (333)
                      .
T Consensus        80 ~   80 (90)
T 4dwf_A           80 Q   80 (90)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.70  E-value=3e-17  Score=128.21  Aligned_cols=75  Identities=24%  Similarity=0.258  Sum_probs=71.8

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCee-cCCCCcccccCCCCCCEEEEEeec
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-LEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~-LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      .-|+|+|++.+|++++++|++++||++||++|++++|+|  +++|+|+|+|+. |+|+.+|++|+|++|++|+|++++
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            359999999999999999999999999999999999999  999999999999 999999999999999999998863

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.70  E-value=5.2e-17  Score=124.16  Aligned_cols=75  Identities=23%  Similarity=0.360  Sum_probs=71.6

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      ..|+|+|+ ++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++|+.
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~l~l~~rl~   78 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLR   78 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCB
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecC
Confidence            47999996 78999999999999999999999999999999999999999998 99999999999999999999875

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.70  E-value=4.2e-17  Score=128.00  Aligned_cols=75  Identities=25%  Similarity=0.377  Sum_probs=71.9

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      |+|+|++.+|++++++|++++||++||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|+|++|+..
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~G   75 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG   75 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence            7899999999999999999999999999999999999  99999999999999999999999999999999999653

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.69  E-value=5.6e-17  Score=129.42  Aligned_cols=91  Identities=31%  Similarity=0.504  Sum_probs=72.5

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccccce
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI  112 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m~I  112 (333)
                      |+|+|+ .+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+..++.++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~gG~~i   79 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGRDP   79 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence            899995 68999999999999999999999999999999999999999998 9999999999999999999999999999


Q ss_pred             eEeeeCCcEEEEE
Q 019968          113 TVTTVCGKVFEFH  125 (333)
Q Consensus       113 ~Vkt~~Gk~~~l~  125 (333)
                      +.+|.+|+.-.++
T Consensus        80 ~~~~v~~~~~~~~   92 (98)
T 1yx5_B           80 NSSSVDKLAAALE   92 (98)
T ss_dssp             -------------
T ss_pred             ccccCCCchhhhh
Confidence            9999998765554

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.69  E-value=3.7e-17  Score=128.89  Aligned_cols=74  Identities=14%  Similarity=0.324  Sum_probs=70.3

Q ss_pred             cceeEeeeCCcEEEEEEe--cCCchHHHHHHH-HHhcCCCCCCCceEEEECCeecCCCCcccccCC-CCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVE--RGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~--~sdTV~~LK~~I-~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I-~~gsvIhLv~r~~  185 (333)
                      |+|+||+.+|++++++|+  +++||.+||++| +++.|+|  +++|||+|+|+.|+|+.+|++|+| ++|++|+|+.++.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~   79 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN   79 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSS--STTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence            899999999999999877  999999999999 9999999  999999999999999999999999 7999999998864

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.68  E-value=8.9e-17  Score=126.58  Aligned_cols=76  Identities=30%  Similarity=0.406  Sum_probs=72.9

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      ...|+|+|++.+|+++.++|++++||.+||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|||++|++|||++|+
T Consensus        15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl   90 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   90 (91)
T ss_dssp             CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence            3469999999999999999999999999999999999999  999999999999999999999999999999999885

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.68  E-value=9.8e-17  Score=124.61  Aligned_cols=82  Identities=29%  Similarity=0.520  Sum_probs=75.9

Q ss_pred             CCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           27 EKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        27 ~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      ++.+..+|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|+|+++
T Consensus         6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r   84 (88)
T 3dbh_I            6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLR   84 (88)
T ss_dssp             CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBGGGGTCCTTCEEEECCC
T ss_pred             CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence            3445678999996 79999999999999999999999999999999999999999998 999999999999999999998


Q ss_pred             cccc
Q 019968          106 LSDL  109 (333)
Q Consensus       106 lsd~  109 (333)
                      +.++
T Consensus        85 l~GG   88 (88)
T 3dbh_I           85 LRGG   88 (88)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8653

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.68  E-value=5.6e-17  Score=131.05  Aligned_cols=72  Identities=14%  Similarity=0.096  Sum_probs=69.6

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      .|+|+|++.+|++++++|++++||.+||++|++++|+|  +++|||+|+|+.|+|+.+|++|+|+++++|||+.
T Consensus        28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence            49999999999999999999999999999999999999  9999999999999999999999999999999964

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.68  E-value=9.3e-17  Score=122.74  Aligned_cols=75  Identities=12%  Similarity=0.232  Sum_probs=72.0

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .|+|+|++.+|+++.++|++++||.+||++|+++.|+|  +++|+|+|+|+.|+|+.|+++|++++|++||+++++.
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~   77 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   77 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence            48899999999999999999999999999999999999  9999999999999999999999999999999998853

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.68  E-value=1.3e-16  Score=128.50  Aligned_cols=77  Identities=13%  Similarity=0.308  Sum_probs=70.6

Q ss_pred             ccccceeEeeeCCcEEEE--EEecCCchHHHHHHH-HHhcCCCCCCCceEEEECCeecCCCCcccccCC-CCCCEEEEEe
Q 019968          107 SDLQAITVTTVCGKVFEF--HVERGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLV  182 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l--~V~~sdTV~~LK~~I-~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I-~~gsvIhLv~  182 (333)
                      ...|+|+|++.+|++|++  +|++++||++||++| ++..|+|  +++|||+|+|+.|+|+.+|++|+| ++|++|||++
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv   94 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI   94 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence            457999999999998877  455999999999999 8888999  999999999999999999999999 9999999998


Q ss_pred             ecC
Q 019968          183 RKS  185 (333)
Q Consensus       183 r~~  185 (333)
                      +++
T Consensus        95 skp   97 (98)
T 4a20_A           95 KPN   97 (98)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            864

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.67  E-value=1e-16  Score=127.57  Aligned_cols=73  Identities=21%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      ....|+|+|+ +.|+++.++++|+|||.+||++|+++.|+|+++|+|+|+|++|+ |+.+|++|+|++|++|+|.
T Consensus        18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~Lk-D~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEE
T ss_pred             CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEcc-CcCCHHHcCCCCCCEEEEE
Confidence            4678999996 89999999999999999999999999999999999999999998 9999999999999999986

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.67  E-value=1.6e-16  Score=125.11  Aligned_cols=79  Identities=35%  Similarity=0.618  Sum_probs=74.0

Q ss_pred             CCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           28 KLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        28 ~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      +.+...|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+|++|+
T Consensus        12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~rl   90 (91)
T 3v6c_B           12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRL   90 (91)
T ss_dssp             CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBTGGGTCCTTCEEEEECCC
T ss_pred             CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcCcHHHCCCCCCCEEEEEEec
Confidence            345779999996 79999999999999999999999999999999999999999998 9999999999999999999886


Q ss_pred             c
Q 019968          107 S  107 (333)
Q Consensus       107 s  107 (333)
                      +
T Consensus        91 r   91 (91)
T 3v6c_B           91 R   91 (91)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.67  E-value=2.2e-16  Score=122.05  Aligned_cols=77  Identities=23%  Similarity=0.302  Sum_probs=71.4

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHh---cCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~---~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      +..|+|+|++.+|+++.++|++++||++||++|++.   +|+|  +++|+|+|+|+.|+|+.+|++|+|++|++||++.+
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~   80 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT   80 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence            457999999999999999999999999999999997   8999  99999999999999999999999999999999987


Q ss_pred             cC
Q 019968          184 KS  185 (333)
Q Consensus       184 ~~  185 (333)
                      ++
T Consensus        81 ~~   82 (85)
T 2wyq_A           81 KT   82 (85)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=2e-16  Score=131.16  Aligned_cols=80  Identities=18%  Similarity=0.254  Sum_probs=71.6

Q ss_pred             cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHH------hcCCCCCCCceEEEECCeecCCCCcccccCCCCC--CE
Q 019968          106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNE--AV  177 (333)
Q Consensus       106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~------~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~g--sv  177 (333)
                      +.+.|+|+|+|.+|++++++|++++||++||++|++      ++|+|.++++|||+|+|+.|+|+.||++|+|+.+  ++
T Consensus        13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t   92 (116)
T 1wgh_A           13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV   92 (116)
T ss_dssp             CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence            456799999999999999999999999999999999      6675333999999999999999999999999766  68


Q ss_pred             EEEEeecC
Q 019968          178 IHLLVRKS  185 (333)
Q Consensus       178 IhLv~r~~  185 (333)
                      +||++|..
T Consensus        93 lhLvlr~~  100 (116)
T 1wgh_A           93 MHLVARET  100 (116)
T ss_dssp             EEEEECSS
T ss_pred             EEEEccCC
Confidence            99999864

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.67  E-value=1.5e-16  Score=127.26  Aligned_cols=78  Identities=12%  Similarity=0.224  Sum_probs=73.6

Q ss_pred             cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .+..|+|+|++.+|+++.++|.+++||.+||++|+++.|+|  +++|+|+|+|+.|+|+.||++|+|+++++|||++++.
T Consensus        18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~   95 (97)
T 1wyw_B           18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   95 (97)
T ss_dssp             -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence            34569999999999999999999999999999999999999  9999999999999999999999999999999998853

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.67  E-value=1.3e-16  Score=123.88  Aligned_cols=77  Identities=26%  Similarity=0.381  Sum_probs=73.3

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ...|+|+|++.+|+++.++|++++||.+||++|++..|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|||++|+.
T Consensus        10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~   86 (88)
T 3dbh_I           10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR   86 (88)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            3469999999999999999999999999999999999999  9999999999999999999999999999999998864

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.66  E-value=2.5e-16  Score=118.40  Aligned_cols=74  Identities=26%  Similarity=0.380  Sum_probs=71.2

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|+++.++|++++||++||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|++++|++||++++..
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~   74 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR   74 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999998853

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.66  E-value=1.5e-16  Score=124.75  Aligned_cols=76  Identities=20%  Similarity=0.168  Sum_probs=71.7

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ..|+|+|++.+|++++++|++++||++||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|+|+.++.
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~   78 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR   78 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC--TTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence            468999999999999999999999999999999999999  9999999999999999999999999999999998864

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.66  E-value=5e-17  Score=134.00  Aligned_cols=99  Identities=27%  Similarity=0.366  Sum_probs=86.8

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCCc
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK  187 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~~  187 (333)
                      +..+|+|++.+|+++.++|++++||++||++|++..|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|+|+.++...
T Consensus         8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG   85 (114)
T 2kdi_A            8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   85 (114)
T ss_dssp             CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred             CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            457899999999999999999999999999999999999  999999999999999999999999999999999996532


Q ss_pred             --ccccc----CCceEEEEEeeccccc
Q 019968          188 --VRAKP----VQKDFEVSIEATELNE  208 (333)
Q Consensus       188 --v~t~~----~gk~~~l~v~~~d~~~  208 (333)
                        +..+.    .|++++++|+++++.+
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~  112 (114)
T 2kdi_A           86 SMGGAADEEELIRKAIELSLKESRNSG  112 (114)
T ss_dssp             CCCSSCSSSHHHHHHHHSSSHHHHHGG
T ss_pred             ceeeccccccccCceEEEEeccccccC
Confidence              22221    2788888888887753

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=4.1e-16  Score=119.12  Aligned_cols=77  Identities=22%  Similarity=0.434  Sum_probs=72.6

Q ss_pred             CCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           29 LSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        29 ~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      .+...|+|+|+ .+|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|++++++
T Consensus         3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALA-DGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECC-TTSBGGGGTCCSSBCCEEECCC
T ss_pred             CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence            45778999995 78999999999999999999999999999999999999999998 9999999999999999999876

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.6e-16  Score=129.27  Aligned_cols=75  Identities=13%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      |+|+|++.+|+++.++|++++||.+||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|||++|++|||+++++.
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~   76 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK   76 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence            7899999999999999999999999999999999999  99999999999999999999999999999999998654

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.66  E-value=1.9e-16  Score=124.20  Aligned_cols=76  Identities=28%  Similarity=0.538  Sum_probs=70.8

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m  110 (333)
                      |+|+|+ ++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++++.++.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~l~l~~rl~Gg~   77 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGGG   77 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECBCC---
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEECCCCC
Confidence            789995 89999999999999999999999999999999999999999998 99999999999999999999988765

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.66  E-value=5.3e-17  Score=131.06  Aligned_cols=94  Identities=20%  Similarity=0.264  Sum_probs=68.4

Q ss_pred             CccccccccccccceeeeeecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCC
Q 019968           86 NSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQR  165 (333)
Q Consensus        86 ~~tL~dygI~~gstV~Lv~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~  165 (333)
                      ...+++|.|  +++.++.++..-.+.|+|++ +|+++.++|++++||++||++|++++|+|  +++|+|+|+|+.|+|+.
T Consensus         7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~   81 (101)
T 3m63_B            7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQ   81 (101)
T ss_dssp             ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCC--STTCCEEETTEECCTTS
T ss_pred             cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCcC
Confidence            356788987  56666666665567788887 89999999999999999999999999999  99999999999999999


Q ss_pred             cccccCCCCCCEEEEEeec
Q 019968          166 LITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       166 tL~dy~I~~gsvIhLv~r~  184 (333)
                      +|++|||++|++|+|+.+.
T Consensus        82 tL~~~gI~~g~tI~lv~~~  100 (101)
T 3m63_B           82 TVESYHIQDGHSVHLVKSQ  100 (101)
T ss_dssp             BTTTTTCCTTEEEEECCCC
T ss_pred             cHHHCCCCCCCEEEEEeCC
Confidence            9999999999999998764

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.65  E-value=3.3e-16  Score=123.94  Aligned_cols=76  Identities=32%  Similarity=0.418  Sum_probs=72.5

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      +|+|+|++.+|+++.++|++++||.+||++|++.+|+|  ++.|+|+|+|+.|+|+.+|++|+|.+|++|||+++...
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~g   76 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   76 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence            58999999999999999999999999999999999999  99999999999999999999999999999999998654

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=2.8e-16  Score=123.29  Aligned_cols=76  Identities=28%  Similarity=0.414  Sum_probs=70.0

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .+|+|+|++.+|+++.++|++++||++||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|++++|++|+|+++..
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~   83 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   83 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            479999999999999999999999999999999999999  9999999999999999999999999999999998854

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=5.7e-16  Score=123.17  Aligned_cols=75  Identities=19%  Similarity=0.310  Sum_probs=71.5

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHh---cCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~---~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      |+|+|++.+|+.+.++|++++||++||++|++.   +|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~   78 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence            789999999999999999999999999999999   8899  99999999999999999999999999999999988643

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=3.7e-16  Score=119.37  Aligned_cols=76  Identities=22%  Similarity=0.327  Sum_probs=72.4

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      +..|+|+|++.+|+++.++|++++||++||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|++++|++||+++++
T Consensus         5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP--VRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            3469999999999999999999999999999999999999  999999999999999999999999999999999875

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.6e-16  Score=125.89  Aligned_cols=81  Identities=33%  Similarity=0.573  Sum_probs=72.7

Q ss_pred             CCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           28 KLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        28 ~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      +..+..|+|+|+ ++|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++|+
T Consensus        17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~rl   95 (98)
T 4hcn_B           17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRL   95 (98)
T ss_dssp             -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBSGGGTCCTTEEEEEECBC
T ss_pred             CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEec
Confidence            345778999996 79999999999999999999999999999999999999999998 9999999999999999999988


Q ss_pred             ccc
Q 019968          107 SDL  109 (333)
Q Consensus       107 sd~  109 (333)
                      .++
T Consensus        96 ~GG   98 (98)
T 4hcn_B           96 RGG   98 (98)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            653

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.65  E-value=3e-16  Score=131.69  Aligned_cols=79  Identities=16%  Similarity=0.247  Sum_probs=71.6

Q ss_pred             ccccceeEeeeCCcEE-EEEEecCCchHHHHHHH-----HHhcCCCCCCCceEEEECCeecCCCCcccccCCCCC-----
Q 019968          107 SDLQAITVTTVCGKVF-EFHVERGRNVGYVKQQI-----AKKGREFVDLKNQELICDGEELEDQRLITDICKRNE-----  175 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~-~l~V~~sdTV~~LK~~I-----~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~g-----  175 (333)
                      .+.|+|.|+|.+|+.+ ++++++++||++||++|     ++++|+|+++++|||+|+|+.|+|++||++|+|+++     
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~   93 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   93 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence            4789999999999988 79999999999999999     567788844489999999999999999999999998     


Q ss_pred             -CEEEEEeecC
Q 019968          176 -AVIHLLVRKS  185 (333)
Q Consensus       176 -svIhLv~r~~  185 (333)
                       +++||++++.
T Consensus        94 v~tmhlVlrl~  104 (126)
T 1se9_A           94 VTTMHVIIQAP  104 (126)
T ss_dssp             CEEEEEEECCC
T ss_pred             cEEEEEEeccC
Confidence             6899999865

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.65  E-value=2.7e-16  Score=122.74  Aligned_cols=74  Identities=20%  Similarity=0.296  Sum_probs=70.3

Q ss_pred             CcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCee-cccCCccccccccccccceeeeeec
Q 019968           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-LARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        32 ~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~-L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      .-|+|+| ++.|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+. |+ |+.+|++|+|++|++|+|++++
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~-D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR-EDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC-SSSBHHHHTCCTTSCEEEEECC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC-CcCCHHHcCCCCCCEEEEEEcC
Confidence            3699999 5899999999999999999999999999999999999999999 97 9999999999999999998764

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=4.7e-16  Score=120.78  Aligned_cols=77  Identities=19%  Similarity=0.139  Sum_probs=73.5

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +..|+|+|++.+|+++.++|++++||.+||++|++..|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|||++++.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~   81 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKG   81 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSC
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC--hHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEecc
Confidence            3569999999999999999999999999999999999999  9999999999999999999999999999999999864

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=3.3e-16  Score=120.66  Aligned_cols=75  Identities=29%  Similarity=0.385  Sum_probs=71.8

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .|+|+|++.+|++++++|++++||.+||++|++.+++|  +++|+|+|+|+.|+|+.+|++|+|+++++||+++|+.
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~   77 (85)
T 3n3k_B            3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR   77 (85)
T ss_dssp             -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence            58999999999999999999999999999999999999  9999999999999999999999999999999999864

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.65  E-value=5.6e-16  Score=116.47  Aligned_cols=74  Identities=32%  Similarity=0.445  Sum_probs=71.2

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|+++.++|++++||.+||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|++.+|++||+++++.
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~   74 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR   74 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999998854

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3.6e-16  Score=125.03  Aligned_cols=77  Identities=31%  Similarity=0.429  Sum_probs=72.5

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ...|+|+|++.+|+++.++|++++||.+||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||++|+.
T Consensus        20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~   96 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   96 (98)
T ss_dssp             --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence            3469999999999999999999999999999999999999  9999999999999999999999999999999999864

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.64  E-value=4.7e-16  Score=128.87  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=70.0

Q ss_pred             cceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCC-------CCEEEEE
Q 019968          110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRN-------EAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~-------gsvIhLv  181 (333)
                      |.+|++...++ ++.++|++++||.+||++|+.++|+|  +++|||+|+|+.|+|++||++|||++       +++|||+
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv   78 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA   78 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence            66888887777 78899999999999999999999999  99999999999999999999999999       9999999


Q ss_pred             eecCC
Q 019968          182 VRKSA  186 (333)
Q Consensus       182 ~r~~~  186 (333)
                      +|...
T Consensus        79 lr~~~   83 (118)
T 4ajy_B           79 FRADD   83 (118)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            99743

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=8.1e-16  Score=120.05  Aligned_cols=76  Identities=24%  Similarity=0.232  Sum_probs=72.1

Q ss_pred             cccceeEeeeCC-cEEEE-EEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCG-KVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~G-k~~~l-~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ..|+|+|++.+| +++.+ +|++++||.+||++|++..|+|  +++|+|+|+|+.|+|+.+|++|+|.++++|||+++..
T Consensus         6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~   83 (89)
T 1wy8_A            6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR--PECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD   83 (89)
T ss_dssp             SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC--TTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred             CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence            469999999999 79999 5999999999999999999999  9999999999999999999999999999999999864

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.64  E-value=6.7e-16  Score=122.96  Aligned_cols=76  Identities=21%  Similarity=0.237  Sum_probs=72.1

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~-~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ...|+|+|++.+| +++++|++++||++||++|++++|+|  +++|+|+|+|+.|+|+ .+|++|+|++|++|+|++++.
T Consensus        13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~   89 (94)
T 2kan_A           13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP--IKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI   89 (94)
T ss_dssp             SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC--TTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred             CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence            4579999999888 89999999999999999999999999  9999999999999999 999999999999999999864

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.64  E-value=3.7e-16  Score=129.67  Aligned_cols=73  Identities=15%  Similarity=0.083  Sum_probs=68.1

Q ss_pred             cceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCC-------CCCEEEEE
Q 019968          110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR-------NEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~-------~gsvIhLv  181 (333)
                      |+++|+...|+ +++++|++++||++||++|+.++|+|  +++|||+|+|+.|+|++||++|||+       ++++|||+
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~   78 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA   78 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence            67778777776 58999999999999999999999999  9999999999999999999999999       79999999


Q ss_pred             eec
Q 019968          182 VRK  184 (333)
Q Consensus       182 ~r~  184 (333)
                      +|.
T Consensus        79 lr~   81 (118)
T 2fnj_B           79 FRA   81 (118)
T ss_dssp             EBS
T ss_pred             ecC
Confidence            994

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=6.5e-16  Score=118.86  Aligned_cols=75  Identities=31%  Similarity=0.380  Sum_probs=72.3

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .|+|+|++.+|+++.++|++++||.+||++|++..++|  ++.|+|+|+|+.|+|+.+|++|+|+++++|||++|+.
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~   77 (85)
T 3mtn_B            3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR   77 (85)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred             eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence            58999999999999999999999999999999999999  9999999999999999999999999999999999864

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.63  E-value=6.8e-16  Score=117.48  Aligned_cols=74  Identities=18%  Similarity=0.323  Sum_probs=69.5

Q ss_pred             cEEEEEE-eCCeEE-EEE-ecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           33 SILIFLS-VGGSVI-PMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        33 ~M~I~Vt-~~G~~~-~i~-V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      .|+|+|+ ++|+++ +++ +++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|++
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~-d~~tL~~~~i~~g~~i~l~~r~~   78 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVRQS   78 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEECCC
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence            6999995 678885 999 99999999999999999999999999999999998 99999999999999999998863

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.63  E-value=8.2e-16  Score=120.40  Aligned_cols=76  Identities=24%  Similarity=0.430  Sum_probs=71.6

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      ...|+|+|+ ++|+++.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+ |+.+|.+|+| +|++|||+++.+.
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~~~i-~g~~i~l~~~~~~   79 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVERAPP   79 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEECCCC
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECC-CCCCHHHcCC-CCcEEEEEecCCC
Confidence            358999995 78999999999999999999999999999999999999999998 9999999999 8999999998765

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.63  E-value=1e-15  Score=115.73  Aligned_cols=72  Identities=22%  Similarity=0.287  Sum_probs=69.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      |+|+|++ +|++++++|++++||++||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|++++|++||++.+.
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            8899999 99999999999999999999999999999  999999999999999999999999999999998764

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.63  E-value=9.3e-16  Score=119.73  Aligned_cols=79  Identities=16%  Similarity=0.336  Sum_probs=73.7

Q ss_pred             CCCcEEEEEE-eCC-eEEEE-EecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           30 SNDSILIFLS-VGG-SVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G-~~~~i-~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      +...|+|+|+ +.| +++.+ +|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||++++
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~   82 (89)
T 1wy8_A            4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVRP   82 (89)
T ss_dssp             CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEECC
T ss_pred             CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeC
Confidence            4678999995 678 79999 599999999999999999999999999999999998 9999999999999999999988


Q ss_pred             ccc
Q 019968          107 SDL  109 (333)
Q Consensus       107 sd~  109 (333)
                      .++
T Consensus        83 ~gG   85 (89)
T 1wy8_A           83 DSG   85 (89)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            765

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.63  E-value=1e-15  Score=119.40  Aligned_cols=73  Identities=25%  Similarity=0.454  Sum_probs=69.1

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      ...|+|+|+ ++|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++||| +|++|||++|
T Consensus        15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i-~g~~i~lv~R   88 (88)
T 4eew_A           15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER   88 (88)
T ss_dssp             CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCcHHHcCC-CCcEEEEEEC
Confidence            457999995 68999999999999999999999999999999999999999998 9999999999 8999999875

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.63  E-value=5.4e-16  Score=118.48  Aligned_cols=77  Identities=17%  Similarity=0.295  Sum_probs=72.0

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      +.|+|+|+ .+|+.+.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.++++|+|++|++|+++++..++
T Consensus         2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~-d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence            36999995 78999999999999999999999999999999999999999998 9999999999999999999987653

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.62  E-value=7.5e-16  Score=115.78  Aligned_cols=75  Identities=28%  Similarity=0.550  Sum_probs=69.9

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      |+|+|+ .+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|++.+++.++
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            789996 68999999999999999999999999999999999999999998 9999999999999999999987653

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.62  E-value=1.2e-15  Score=118.42  Aligned_cols=78  Identities=23%  Similarity=0.340  Sum_probs=73.7

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ...|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.++
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~~~i~~g~~i~l~~~~~GG   83 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEcc-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence            458999995 68999999999999999999999999999999999999999998 9999999999999999999998765

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.62  E-value=1.5e-15  Score=120.91  Aligned_cols=82  Identities=17%  Similarity=0.305  Sum_probs=74.5

Q ss_pred             CCCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCC-ccccccccccccceeee
Q 019968           26 PEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV  103 (333)
Q Consensus        26 ~~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~-~tL~dygI~~gstV~Lv  103 (333)
                      .+..+...|+|+|+ ..| +++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+ |+ .+|++|+|++|++|+|+
T Consensus         8 ~~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv   85 (94)
T 2kan_A            8 HSHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVF   85 (94)
T ss_dssp             CSCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEE
T ss_pred             ccccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEE
Confidence            34556778999997 555 8999999999999999999999999999999999999998 88 99999999999999999


Q ss_pred             eecccc
Q 019968          104 LRLSDL  109 (333)
Q Consensus       104 ~rlsd~  109 (333)
                      +++.++
T Consensus        86 ~r~~gg   91 (94)
T 2kan_A           86 LKSINR   91 (94)
T ss_dssp             ECCCSS
T ss_pred             EeCCCC
Confidence            988764

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=2.9e-16  Score=127.99  Aligned_cols=79  Identities=20%  Similarity=0.234  Sum_probs=72.5

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCC---------------CceEEEECCeecC-CCCcccccCC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---------------KNQELICDGEELE-DQRLITDICK  172 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~---------------~~QrLif~Gk~Le-D~~tL~dy~I  172 (333)
                      .|+|+|++++|++++++|++++||++||++|++++++|  +               ++|+|+|+|+.|. |+.+|++|||
T Consensus         7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~--~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI   84 (105)
T 1v2y_A            7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI   84 (105)
T ss_dssp             SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred             cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence            49999999999999999999999999999999999988  6               4679999999995 6799999999


Q ss_pred             CCCCEEEEEeecCCccc
Q 019968          173 RNEAVIHLLVRKSAKVR  189 (333)
Q Consensus       173 ~~gsvIhLv~r~~~~v~  189 (333)
                      ++|++|||+.++..+-+
T Consensus        85 ~~g~~l~lv~~lr~~~~  101 (105)
T 1v2y_A           85 RNRDEVSFIKKLGQKSG  101 (105)
T ss_dssp             CSSEEEEEEECSCSCCC
T ss_pred             CCCCEEEEEehhccCCC
Confidence            99999999999876543

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.62  E-value=2.3e-15  Score=132.17  Aligned_cols=74  Identities=32%  Similarity=0.456  Sum_probs=72.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|++++++|++++||.+||++|++++|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||++|+.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~   74 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEec
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999999965

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.62  E-value=6.3e-16  Score=121.16  Aligned_cols=77  Identities=22%  Similarity=0.333  Sum_probs=69.9

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ..|+|+|+ ++|++++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.++.++
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~~I~~g~~i~l~~~~~gg   80 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG   80 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC-TTSBHHHHHCSTTCEEEEEEC----
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCC
Confidence            47999995 68999999999999999999999999999999999999999998 9999999999999999999887654

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.61  E-value=8.3e-16  Score=124.15  Aligned_cols=74  Identities=20%  Similarity=0.181  Sum_probs=69.3

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      ....|+|+|+ +.|++++++|++++||.+||.+|+++.|+|+++|+|+|+|++|. |+.+|.+|+|++|++|+|..
T Consensus        25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~-D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEe
Confidence            3456999995 78999999999999999999999999999999999999999998 99999999999999999864

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.61  E-value=1.3e-15  Score=117.11  Aligned_cols=77  Identities=32%  Similarity=0.557  Sum_probs=72.3

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      .+|+|+|+ ++|+++.+++++++||.+||.+|++.+++|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.++
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~r~~GG   79 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKWSTLFLLLRLRGG   79 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEECcCC
Confidence            37999996 78999999999999999999999999999999999999999998 9999999999999999999988654

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.61  E-value=9.4e-16  Score=121.63  Aligned_cols=75  Identities=16%  Similarity=0.175  Sum_probs=69.5

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ...|+|+|++  |+++.++|++++||++||++|+++.|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|||++|+.
T Consensus        17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~   91 (93)
T 2l7r_A           17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIA--PEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML   91 (93)
T ss_dssp             ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCC--GGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred             CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence            4569999998  8999999999999999999999999999  9999999999999999999999999999999998864

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.61  E-value=9.2e-16  Score=128.69  Aligned_cols=79  Identities=18%  Similarity=0.262  Sum_probs=71.2

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHH------hcCCCCCCCceEEEECCeecCCCCcccccCCCCCC--EE
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNEA--VI  178 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~------~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gs--vI  178 (333)
                      ...|.|+|+|.+|++++++|++++||++||++|++      ++|+|.++++|||+|+|+.|+|+.||++|+|+.++  ++
T Consensus        15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl   94 (125)
T 2gow_A           15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   94 (125)
T ss_dssp             TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence            34588999999999999999999999999999999      77885448999999999999999999999999776  78


Q ss_pred             EEEeecC
Q 019968          179 HLLVRKS  185 (333)
Q Consensus       179 hLv~r~~  185 (333)
                      ||++|..
T Consensus        95 hlv~r~~  101 (125)
T 2gow_A           95 HLVARET  101 (125)
T ss_dssp             EEEECSC
T ss_pred             EEEecCC
Confidence            9999865

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.61  E-value=1.1e-15  Score=123.95  Aligned_cols=76  Identities=14%  Similarity=0.160  Sum_probs=72.8

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ..|+|+|++.+|+++.++|++++||.+||.+|+++.|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||+.+.+
T Consensus        22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~   97 (106)
T 1ttn_A           22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   97 (106)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC--STTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            459999999999999999999999999999999999999  9999999999999999999999999999999999864

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.61  E-value=1.6e-15  Score=113.94  Aligned_cols=75  Identities=36%  Similarity=0.615  Sum_probs=70.8

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      |+|+|+ .+|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|++.+++.++
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            789995 68999999999999999999999999999999999999999998 8999999999999999999987653

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.61  E-value=8.3e-16  Score=118.44  Aligned_cols=77  Identities=30%  Similarity=0.500  Sum_probs=70.5

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      .+|+|+|+ .+|+++++++++++||.+||.+|++.+++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~rl~GG   79 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIHNHSALYLLLKLRGG   79 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECC-TTCBTTTTTCCTTCEEEEEECCC--
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence            37999996 78999999999999999999999999999999999999999998 9999999999999999999988654

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.61  E-value=2.5e-15  Score=122.89  Aligned_cols=91  Identities=30%  Similarity=0.383  Sum_probs=81.0

Q ss_pred             ccccccceeeeeec--------ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC
Q 019968           93 GLADGNVLHLVLRL--------SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ  164 (333)
Q Consensus        93 gI~~gstV~Lv~rl--------sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~  164 (333)
                      ++.+|+++.+....        ...|+|+|++.+|+++.++|++++||.+||++|++..|+|  +++|+|+|+|+.|+|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~   88 (111)
T 2ojr_A           11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDG   88 (111)
T ss_dssp             SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCSS
T ss_pred             ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--cccEEEEECCEECCCC
Confidence            35566666666543        2469999999999999999999999999999999999999  9999999999999999


Q ss_pred             CcccccCCCCCCEEEEEeecC
Q 019968          165 RLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       165 ~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .+|++|++++|++|||++|+.
T Consensus        89 ~tL~~~gI~~gs~I~l~~rl~  109 (111)
T 2ojr_A           89 RTLSDYNIQKESTLHLVLRLR  109 (111)
T ss_dssp             CBTTTTTCCTTCEEEEEECCC
T ss_pred             CcHHHcCCCCCCEEEEEEeCC
Confidence            999999999999999998864

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.61  E-value=1.4e-15  Score=120.33  Aligned_cols=79  Identities=34%  Similarity=0.617  Sum_probs=71.6

Q ss_pred             cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccccc
Q 019968           33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA  111 (333)
Q Consensus        33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m~  111 (333)
                      .|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|+|++++.+++.
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r~~gG~~   79 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGYAD   79 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence            3899995 78999999999999999999999999999999999999999998 999999999999999999999988765


Q ss_pred             e
Q 019968          112 I  112 (333)
Q Consensus       112 I  112 (333)
                      .
T Consensus        80 ~   80 (96)
T 3k9o_B           80 L   80 (96)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.40  E-value=4.5e-17  Score=123.31  Aligned_cols=74  Identities=16%  Similarity=0.235  Sum_probs=71.3

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|+++.++|++++||++||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|++.+|++||+++|+.
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr   74 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR   74 (76)
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999998864

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.61  E-value=2.1e-15  Score=123.57  Aligned_cols=76  Identities=32%  Similarity=0.413  Sum_probs=72.9

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ..|+|+|++.+|+++.++|++++||.+||++|+++.|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|||++|+.
T Consensus        34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~  109 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  109 (111)
T ss_dssp             GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCC
T ss_pred             ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence            369999999999999999999999999999999999999  9999999999999999999999999999999999864

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.60  E-value=1.4e-15  Score=119.28  Aligned_cols=76  Identities=30%  Similarity=0.586  Sum_probs=68.3

Q ss_pred             cEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        33 ~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      .|+|+| +++|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.++
T Consensus         9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A            9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBSGGGTCCTTCEEEEEC-----
T ss_pred             ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            699999 689999999999999999999999999999999999999999998 9999999999999999999987764

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.60  E-value=1.2e-15  Score=121.89  Aligned_cols=79  Identities=16%  Similarity=0.290  Sum_probs=73.6

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      +...|+|+|+ ++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.+
T Consensus        18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~l~~~~~G   96 (97)
T 1wyw_B           18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTG   96 (97)
T ss_dssp             -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTCEEEEEESSSC
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcC-CCCCHHHCCCCCCCEEEEEEecCC
Confidence            3567999995 78999999999999999999999999999999999999999998 999999999999999999998765


Q ss_pred             c
Q 019968          109 L  109 (333)
Q Consensus       109 ~  109 (333)
                      +
T Consensus        97 G   97 (97)
T 1wyw_B           97 G   97 (97)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=121.25  Aligned_cols=78  Identities=17%  Similarity=0.310  Sum_probs=70.8

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ....|+|+|+. |+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++|+.++
T Consensus        16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence            36679999987 899999999999999999999999999999999999999998 9999999999999999999988753

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.60  E-value=1.7e-15  Score=119.71  Aligned_cols=76  Identities=24%  Similarity=0.355  Sum_probs=70.1

Q ss_pred             cccceeEeeeCCc--EEEEEEecCCchHHHHHHHHHhc--CCCCCCCceEEEECCeecCCCCccccc--CCCCCCEEEEE
Q 019968          108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL  181 (333)
Q Consensus       108 d~m~I~Vkt~~Gk--~~~l~V~~sdTV~~LK~~I~~~~--Gip~~~~~QrLif~Gk~LeD~~tL~dy--~I~~gsvIhLv  181 (333)
                      ..|+|+|++.+|+  ++.++|++++||.+||++|++++  |+|  +++|||+|+|+.|+|+.+|++|  +|+++++|||+
T Consensus         6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv   83 (93)
T 1wgd_A            6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV   83 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred             cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence            4589999999998  66777779999999999999998  999  9999999999999999999999  99999999999


Q ss_pred             eecC
Q 019968          182 VRKS  185 (333)
Q Consensus       182 ~r~~  185 (333)
                      +++.
T Consensus        84 ~~~~   87 (93)
T 1wgd_A           84 CNVK   87 (93)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            8854

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.60  E-value=3e-15  Score=119.32  Aligned_cols=74  Identities=32%  Similarity=0.447  Sum_probs=71.5

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|+++.++|++++||++||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|++.+|++|+|+.+..
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~   74 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999998864

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.59  E-value=3.1e-15  Score=122.53  Aligned_cols=78  Identities=35%  Similarity=0.570  Sum_probs=73.2

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ...|+|+|+ ++|+++.++|.+++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||++|+.++
T Consensus        33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence            457999996 78999999999999999999999999999999999999999998 9999999999999999999988653

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=1.3e-14  Score=121.45  Aligned_cols=78  Identities=21%  Similarity=0.237  Sum_probs=70.0

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ...|+|+|+..|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|+|+.+..++
T Consensus        30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~lv~~~~gg  107 (125)
T 1j8c_A           30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVIKRDPN  107 (125)
T ss_dssp             CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEEC----
T ss_pred             CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCCC
Confidence            45799999744999999999999999999999999999999999999999998 9999999999999999999987654

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.59  E-value=7.9e-16  Score=125.40  Aligned_cols=79  Identities=20%  Similarity=0.460  Sum_probs=72.3

Q ss_pred             CCCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc---------------ceEEEECCeecccCCccccccc
Q 019968           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---------------KQKLVFEGRELARSNSRVRDYG   93 (333)
Q Consensus        30 ~~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~---------------~Q~Lif~G~~L~~D~~tL~dyg   93 (333)
                      +...|+|+| +++|++++++|.+++||.+||.+|+++.++|+.               +|+|+|+|+.|.+|+.+|++||
T Consensus         4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg   83 (105)
T 1v2y_A            4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG   83 (105)
T ss_dssp             CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred             CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence            456799999 599999999999999999999999999999884               5799999999975779999999


Q ss_pred             cccccceeeeeeccc
Q 019968           94 LADGNVLHLVLRLSD  108 (333)
Q Consensus        94 I~~gstV~Lv~rlsd  108 (333)
                      |++|++||++.++.+
T Consensus        84 I~~g~~l~lv~~lr~   98 (105)
T 1v2y_A           84 IRNRDEVSFIKKLGQ   98 (105)
T ss_dssp             CCSSEEEEEEECSCS
T ss_pred             CCCCCEEEEEehhcc
Confidence            999999999998865

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.59  E-value=4.3e-15  Score=114.67  Aligned_cols=76  Identities=21%  Similarity=0.426  Sum_probs=69.3

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHh---hCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~---~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ...|+|+|+ .+|+.+.++|++++||.+||.+|+..   +|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+.+.
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC-TTSBGGGGCCCTTSEEEEEEC-
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc-CCCCHHHcCCCCCCEEEEEEcC
Confidence            357999995 67999999999999999999999998   899999999999999998 9999999999999999998875


Q ss_pred             c
Q 019968          107 S  107 (333)
Q Consensus       107 s  107 (333)
                      +
T Consensus        82 ~   82 (85)
T 2wyq_A           82 T   82 (85)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=2.3e-15  Score=122.20  Aligned_cols=83  Identities=18%  Similarity=0.298  Sum_probs=72.8

Q ss_pred             CCCCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968           25 RPEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        25 ~~~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      +|.+.+...|+|+|+ ++|+++.++|.+++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|||++|++|||+
T Consensus        15 ~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~ti~lv   93 (106)
T 1ttn_A           15 EPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVI   93 (106)
T ss_dssp             ------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEE
T ss_pred             CCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEE
Confidence            334445778999995 68999999999999999999999999999999999999999998 9999999999999999999


Q ss_pred             eeccc
Q 019968          104 LRLSD  108 (333)
Q Consensus       104 ~rlsd  108 (333)
                      .+.++
T Consensus        94 ~~~~~   98 (106)
T 1ttn_A           94 VSQPV   98 (106)
T ss_dssp             CCCSS
T ss_pred             EeCCC
Confidence            87654

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.59  E-value=3e-15  Score=131.48  Aligned_cols=82  Identities=34%  Similarity=0.571  Sum_probs=75.3

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccccce
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI  112 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m~I  112 (333)
                      |+|+| +++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++|+.++++.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~gstI~Lvlrl~GG~k~   79 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGGE   79 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcccc-CcCcHHHcCCCCCCEEEEEEEecccccc
Confidence            89999 479999999999999999999999999999999999999999998 9999999999999999999999988777


Q ss_pred             eEee
Q 019968          113 TVTT  116 (333)
Q Consensus       113 ~Vkt  116 (333)
                      .|+.
T Consensus        80 ~vkf   83 (169)
T 3l0w_B           80 TIKF   83 (169)
T ss_dssp             CEEE
T ss_pred             cccc
Confidence            7765

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=3.6e-15  Score=120.05  Aligned_cols=78  Identities=22%  Similarity=0.317  Sum_probs=72.7

Q ss_pred             cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .+..|+|+|++.+|+ +.++|++++||.+||++|++..|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|+|++++.
T Consensus        19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~   95 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ   95 (100)
T ss_dssp             CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred             CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence            345699999999886 7999999999999999999999999  9999999999999999999999999999999999865


Q ss_pred             C
Q 019968          186 A  186 (333)
Q Consensus       186 ~  186 (333)
                      .
T Consensus        96 ~   96 (100)
T 1yqb_A           96 H   96 (100)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.59  E-value=1e-15  Score=120.68  Aligned_cols=72  Identities=15%  Similarity=0.295  Sum_probs=67.5

Q ss_pred             EEEEE-EeCCeEEEEEec--CCCCHHHHHHHH-HHhhCCCCcceEEEECCeecccCCcccccccc-ccccceeeeeec
Q 019968           34 ILIFL-SVGGSVIPMRVM--ESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLRL  106 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~--~sdTV~~LK~kI-~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI-~~gstV~Lv~rl  106 (333)
                      |+|+| ++.|++++++|+  +++||.+||.+| +...|+|+++|+|+|+|+.|. |+.+|++|+| ++|++|+|..++
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECC-TTCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECc-CcCCHHHcCCCCCCCEEEEEcCC
Confidence            89999 589998988866  999999999999 999999999999999999998 9999999999 799999998875

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=2.9e-15  Score=120.97  Aligned_cols=68  Identities=9%  Similarity=-0.013  Sum_probs=61.7

Q ss_pred             eeEeeeC----CcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          112 ITVTTVC----GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       112 I~Vkt~~----Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      |.|+..+    +++++++|++++||.+||++|++++|+|  +++|+|+|+|+.|+|+.||++|+|++|++|+++
T Consensus        18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl   89 (100)
T 1wju_A           18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL   89 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred             EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcC--HHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence            4444444    6789999999999999999999999999  999999999999999999999999999999554

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.58  E-value=7.1e-15  Score=111.11  Aligned_cols=73  Identities=27%  Similarity=0.453  Sum_probs=68.4

Q ss_pred             cEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      .|+|+|+..|+.+.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++|++..+.
T Consensus         4 ~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            4 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEEcC
Confidence            488999668999999999999999999999999999999999999999998 8999999999999999998653

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.58  E-value=4.9e-15  Score=119.37  Aligned_cols=77  Identities=23%  Similarity=0.326  Sum_probs=72.0

Q ss_pred             cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ....|+|+|++. |+++.++|++++||++||++|++..|+|  ++.|+|+|+|+.|+|+.+|++|+|++|++|+|+.+++
T Consensus        22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC--GGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred             CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence            345799999998 8899999999999999999999999999  9999999999999999999999999999999998864

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.58  E-value=3.2e-15  Score=122.22  Aligned_cols=78  Identities=22%  Similarity=0.247  Sum_probs=73.5

Q ss_pred             cccccceeEeee---CCcEEEEEEec-CCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          106 LSDLQAITVTTV---CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       106 lsd~m~I~Vkt~---~Gk~~~l~V~~-sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      .+..|+|+|++.   +|+.+.++|++ ++||.+||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|.+|++|||+
T Consensus        24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~  101 (111)
T 1we6_A           24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLS  101 (111)
T ss_dssp             CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred             CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence            356799999998   89999999998 999999999999999999  999999999999999999999999999999999


Q ss_pred             eecC
Q 019968          182 VRKS  185 (333)
Q Consensus       182 ~r~~  185 (333)
                      +++.
T Consensus       102 ~r~~  105 (111)
T 1we6_A          102 LRER  105 (111)
T ss_dssp             CSSC
T ss_pred             EEcC
Confidence            9864

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.58  E-value=4.4e-15  Score=119.53  Aligned_cols=76  Identities=16%  Similarity=0.315  Sum_probs=68.1

Q ss_pred             CCCcEEEEE-EeCCeEEEE--EecCCCCHHHHHHHH-HHhhCCCCcceEEEECCeecccCCcccccccc-ccccceeeee
Q 019968           30 SNDSILIFL-SVGGSVIPM--RVMESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVL  104 (333)
Q Consensus        30 ~~~~M~I~V-t~~G~~~~i--~V~~sdTV~~LK~kI-~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI-~~gstV~Lv~  104 (333)
                      ...+|+|+| ++.|+.+++  ++.+++||.+||.+| +...|+|+++|+|+|+|+.|. |+.+|++|+| ++|++|+|++
T Consensus        16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~g~ti~lmv   94 (98)
T 4a20_A           16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMI   94 (98)
T ss_dssp             --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEEC-TTCBGGGSCCBTTBCEEEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECc-CcCCHHHcCcCCCCCEEEEEE
Confidence            356899999 578987777  556999999999999 888999999999999999998 9999999999 9999999998


Q ss_pred             ec
Q 019968          105 RL  106 (333)
Q Consensus       105 rl  106 (333)
                      +.
T Consensus        95 sk   96 (98)
T 4a20_A           95 KP   96 (98)
T ss_dssp             CC
T ss_pred             eC
Confidence            64

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.57  E-value=2.7e-15  Score=134.15  Aligned_cols=83  Identities=33%  Similarity=0.506  Sum_probs=79.2

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m  110 (333)
                      -.|+|+|+ ++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++++.++.
T Consensus       104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~LvlrlrGG~  182 (189)
T 3q3f_A          104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGG  182 (189)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred             cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECC-CCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence            35999996 78999999999999999999999999999999999999999998 99999999999999999999999999


Q ss_pred             ceeEe
Q 019968          111 AITVT  115 (333)
Q Consensus       111 ~I~Vk  115 (333)
                      .++|+
T Consensus       183 ~~fvk  187 (189)
T 3q3f_A          183 QTFTK  187 (189)
T ss_dssp             CCCCC
T ss_pred             cceEe
Confidence            99885

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=2.8e-15  Score=118.95  Aligned_cols=76  Identities=26%  Similarity=0.326  Sum_probs=71.7

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ...|+|+|++. |+++.++|++++||.+||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|||+++..
T Consensus        15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~   90 (96)
T 1wx8_A           15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH   90 (96)
T ss_dssp             SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC--TTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred             CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence            34689999998 9999999999999999999999999999  9999999999999999999999999999999998864

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.57  E-value=2.8e-15  Score=120.80  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=65.9

Q ss_pred             cccceeEeeeCCc--EEEEEEecCCchHHHHHHHHHh-cCCCCCCCceEEEECCeecCCCCccccc--CCCCCCEEEEE
Q 019968          108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKK-GREFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL  181 (333)
Q Consensus       108 d~m~I~Vkt~~Gk--~~~l~V~~sdTV~~LK~~I~~~-~Gip~~~~~QrLif~Gk~LeD~~tL~dy--~I~~gsvIhLv  181 (333)
                      ..|+|+||+.+|+  +++++|++++||.+||++|+++ .|.| ++++|||+|+|+.|+|+.+|++|  +|+++++|||+
T Consensus        22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKP-LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCC-CTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCC-ChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            4699999999998  6799999999999999999996 5665 15999999999999999999999  99999999985

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.57  E-value=7.4e-15  Score=121.69  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=68.2

Q ss_pred             EEEEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCcccccccccc-------ccceeeee
Q 019968           34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLAD-------GNVLHLVL  104 (333)
Q Consensus        34 M~I~V--t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~-------gstV~Lv~  104 (333)
                      |.+|+  +....++.+++.+++||.+||.+|+.+.|+|+++|+|+|+|+.|+ |+.||++|||++       +++|||++
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvl   79 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECC-CcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence            55666  567779999999999999999999999999999999999999998 999999999999       99999999


Q ss_pred             eccc
Q 019968          105 RLSD  108 (333)
Q Consensus       105 rlsd  108 (333)
                      |..+
T Consensus        80 r~~~   83 (118)
T 4ajy_B           80 RADD   83 (118)
T ss_dssp             CCSS
T ss_pred             ecCC
Confidence            9744

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.56  E-value=4.7e-15  Score=117.62  Aligned_cols=78  Identities=19%  Similarity=0.300  Sum_probs=72.8

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ...|+|+|+..|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|||+.++.++
T Consensus        15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~g   92 (96)
T 1wx8_A           15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVRSHSG   92 (96)
T ss_dssp             SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred             CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CcCCHHHCCCCCCCEEEEEEeCCCC
Confidence            46899999755999999999999999999999999999999999999999998 9999999999999999999987653

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.56  E-value=1e-14  Score=116.59  Aligned_cols=77  Identities=10%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             CCCcEEEEEEeCCeEE-EEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLSVGGSVI-PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~-~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      +...|+|+|+..|+.+ .+++++++||.+||.+|++.+|+|+++|+|+|.|+.|. |+ +|.+|+|++|++|+|+....+
T Consensus         4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~~~   81 (96)
T 1wgg_A            4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSADA   81 (96)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCCCC
T ss_pred             CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecchh
Confidence            4578999999899999 69999999999999999999999999999999999998 88 999999999999999876543

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=3.7e-15  Score=121.13  Aligned_cols=73  Identities=18%  Similarity=0.352  Sum_probs=68.5

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      |+|+|+ ++|+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++.+
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~i~~g~~i~lv~~~~   75 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSECGLKDGDQVVFMVSQK   75 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECCC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECC-CcCCHHHcCCCCCCEEEEEEcCC
Confidence            899996 79999999999999999999999999999999999999999998 99999999999999999998754

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.55  E-value=1.1e-14  Score=115.66  Aligned_cols=73  Identities=18%  Similarity=0.418  Sum_probs=68.7

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHh---hCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~---~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      |+|+|+ ++|+.+.++|++++||.+||.+|+..   +|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+.+
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~~i~l~~~~~   77 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEeCC
Confidence            899995 68999999999999999999999999   899999999999999998 99999999999999999988654

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.55  E-value=5.8e-15  Score=116.66  Aligned_cols=78  Identities=17%  Similarity=0.236  Sum_probs=70.5

Q ss_pred             CCcEEEEEE-eCCe--EEEEEecCCCCHHHHHHHHHHhh--CCCCcceEEEECCeecccCCcccccc--ccccccceeee
Q 019968           31 NDSILIFLS-VGGS--VIPMRVMESDSIASVKLRIQSYN--GFFVKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV  103 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~--~~~i~V~~sdTV~~LK~kI~~~~--gip~~~Q~Lif~G~~L~~D~~tL~dy--gI~~gstV~Lv  103 (333)
                      ...|+|+|+ .+|+  .+++++++++||.+||.+|++.+  ++|+++|+|+|+|+.|+ |+.+|++|  +|++|++|||+
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~~~i~lv   83 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV   83 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCCCEEEEE
Confidence            457999996 6676  67777889999999999999998  99999999999999998 99999999  99999999999


Q ss_pred             eecccc
Q 019968          104 LRLSDL  109 (333)
Q Consensus       104 ~rlsd~  109 (333)
                      +++.++
T Consensus        84 ~~~~gg   89 (93)
T 1wgd_A           84 CNVKSG   89 (93)
T ss_dssp             CCCCCC
T ss_pred             eCCCCC
Confidence            987653

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.55  E-value=2.5e-14  Score=116.98  Aligned_cols=78  Identities=35%  Similarity=0.570  Sum_probs=72.8

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ...|+|+|+ .+|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++|+.++
T Consensus        33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-SSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            458999996 68999999999999999999999999999999999999999998 9999999999999999999987653

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.55  E-value=2e-14  Score=119.05  Aligned_cols=78  Identities=24%  Similarity=0.304  Sum_probs=70.1

Q ss_pred             CCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHH------hhCC--CCcceEEEECCeecccCCccccccccccc--
Q 019968           29 LSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQS------YNGF--FVKKQKLVFEGRELARSNSRVRDYGLADG--   97 (333)
Q Consensus        29 ~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~------~~gi--p~~~Q~Lif~G~~L~~D~~tL~dygI~~g--   97 (333)
                      .+.+.|+|+|+ +.|++++++|++++||.+||.+|+.      +.++  |+++|+|+|+|+.|+ |+.+|++|+|+.+  
T Consensus        12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~Le-D~~TL~~y~I~~~~~   90 (116)
T 1wgh_A           12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKT   90 (116)
T ss_dssp             CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCE
T ss_pred             CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCc
Confidence            35678999995 7999999999999999999999999      6675  699999999999998 9999999999766  


Q ss_pred             cceeeeeecc
Q 019968           98 NVLHLVLRLS  107 (333)
Q Consensus        98 stV~Lv~rls  107 (333)
                      .++||++|+.
T Consensus        91 ~tlhLvlr~~  100 (116)
T 1wgh_A           91 TVMHLVARET  100 (116)
T ss_dssp             EEEEEEECSS
T ss_pred             eEEEEEccCC
Confidence            6899998875

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.32  E-value=3.6e-16  Score=118.33  Aligned_cols=74  Identities=22%  Similarity=0.422  Sum_probs=70.2

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      |+|+|+ .+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|+++
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            899995 78999999999999999999999999999999999999999998 999999999999999999998764

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.55  E-value=7.2e-15  Score=115.84  Aligned_cols=77  Identities=16%  Similarity=0.331  Sum_probs=72.2

Q ss_pred             CCCcEEEEEEeCCeEEEE-EecCCCCHHHHHHHHHHhhCCCCcceEEE---ECCeecccCCccccccccccccceeeeee
Q 019968           30 SNDSILIFLSVGGSVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i-~V~~sdTV~~LK~kI~~~~gip~~~Q~Li---f~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      +...|+|+|+..|+++.+ ++++++||.+||.+|++.+|+|+++|+|+   |+|+.|. |+.+|++|+|++|++|+|+..
T Consensus         4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~-D~~~L~~~~i~~g~~l~l~~~   82 (90)
T 1v5t_A            4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECC
T ss_pred             CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC-CCCCHHHcCCCCCCEEEEEec
Confidence            456899999989999999 99999999999999999999999999999   9999998 999999999999999999876


Q ss_pred             cc
Q 019968          106 LS  107 (333)
Q Consensus       106 ls  107 (333)
                      ..
T Consensus        83 ~~   84 (90)
T 1v5t_A           83 RE   84 (90)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.55  E-value=1.5e-14  Score=117.77  Aligned_cols=74  Identities=12%  Similarity=-0.048  Sum_probs=68.8

Q ss_pred             ccceeEeeeCC--cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCC-CCCCEEEEEeec
Q 019968          109 LQAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRK  184 (333)
Q Consensus       109 ~m~I~Vkt~~G--k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I-~~gsvIhLv~r~  184 (333)
                      .|+|+|++..+  .+++++|++++||++||++|++++|+|  +++|||+|+|+.++|++||.+||| ++|+++||++--
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~  100 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS  100 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence            48899999875  789999999999999999999999999  999999999999999999999999 699999998753

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.54  E-value=2.3e-14  Score=115.42  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=71.7

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      ...|+|+|+..|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+++.
T Consensus        23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~g~~I~l~~~~~~   99 (101)
T 2klc_A           23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTLSQHGIHDGLTVHLVIKTQN   99 (101)
T ss_dssp             CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCCTGGGTCCTTCEEEEEECCSS
T ss_pred             CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCC
Confidence            46899999755899999999999999999999999999999999999999998 999999999999999999987653

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.54  E-value=1.4e-14  Score=117.30  Aligned_cols=76  Identities=22%  Similarity=0.333  Sum_probs=71.2

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      ..|+|+|++.+|+ +.++|++++||.+||++|++.+|++  +++|+|+|+|+.|+|+.+|++|+|+++++|||+.++..
T Consensus        16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~   91 (106)
T 1wx7_A           16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   91 (106)
T ss_dssp             SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC--TTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred             ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence            4589999998886 7999999999999999999999999  99999999999999999999999999999999998653

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.54  E-value=8.7e-15  Score=130.86  Aligned_cols=76  Identities=32%  Similarity=0.418  Sum_probs=73.0

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      .|+|+|++.+|++++++|++++||.+||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|||++++..
T Consensus       105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrG  180 (189)
T 3q3f_A          105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  180 (189)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCC
T ss_pred             ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC--HHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCC
Confidence            49999999999999999999999999999999999999  99999999999999999999999999999999998653

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.54  E-value=1.7e-14  Score=120.79  Aligned_cols=75  Identities=24%  Similarity=0.321  Sum_probs=70.4

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ..|+|+|++. |+++.++|++++||.+||.+|+++.|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||+.++.
T Consensus        31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~  105 (125)
T 1j8c_A           31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRD  105 (125)
T ss_dssp             CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC--SSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred             CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence            4689999998 9999999999999999999999999999  9999999999999999999999999999999999864

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.54  E-value=1.5e-14  Score=120.09  Aligned_cols=71  Identities=17%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             EEEEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccc-------cccceeeee
Q 019968           34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-------DGNVLHLVL  104 (333)
Q Consensus        34 M~I~V--t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~-------~gstV~Lv~  104 (333)
                      |+++|  +....+++++|.+++||.+||.+|+.+.|+|+++|+|+|+|+.|+ |+.+|++|||+       .+++|||++
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le-D~~TLsdy~I~~~~a~~q~~stL~L~l   79 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCcccccccCCCCCEEEEEe
Confidence            44555  444467999999999999999999999999999999999999998 99999999999       799999999


Q ss_pred             e
Q 019968          105 R  105 (333)
Q Consensus       105 r  105 (333)
                      |
T Consensus        80 r   80 (118)
T 2fnj_B           80 R   80 (118)
T ss_dssp             B
T ss_pred             c
Confidence            8

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.53  E-value=1.5e-14  Score=116.50  Aligned_cols=76  Identities=13%  Similarity=0.118  Sum_probs=70.0

Q ss_pred             cccceeEeeeCC----cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEe
Q 019968          108 DLQAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLV  182 (333)
Q Consensus       108 d~m~I~Vkt~~G----k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~-~tL~dy~I~~gsvIhLv~  182 (333)
                      ..|+|+|++.++    ++++++|++++||++||++|++++|+|  +++|+|+|+|+.|+|+ .+|++|+|++|++|||+.
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~   83 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ   83 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC--hHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence            458999999754    799999999999999999999999999  9999999999999887 799999999999999998


Q ss_pred             ecC
Q 019968          183 RKS  185 (333)
Q Consensus       183 r~~  185 (333)
                      +..
T Consensus        84 ~~~   86 (102)
T 1v5o_A           84 KDN   86 (102)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.53  E-value=2.7e-14  Score=114.90  Aligned_cols=78  Identities=21%  Similarity=0.272  Sum_probs=71.4

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      .+..|+|+|+ ..|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.++..
T Consensus        19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~r~~~   96 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQH   96 (100)
T ss_dssp             CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEcCCC
Confidence            3568999996 5665 799999999999999999999999999999999999998 999999999999999999998765


Q ss_pred             c
Q 019968          109 L  109 (333)
Q Consensus       109 ~  109 (333)
                      +
T Consensus        97 ~   97 (100)
T 1yqb_A           97 R   97 (100)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.53  E-value=2.3e-14  Score=115.41  Aligned_cols=79  Identities=16%  Similarity=0.293  Sum_probs=70.5

Q ss_pred             CCCcEEEEEE-eCC----eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCC-ccccccccccccceeee
Q 019968           30 SNDSILIFLS-VGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV  103 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G----~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~-~tL~dygI~~gstV~Lv  103 (333)
                      +...|+|+|+ ..+    +.++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+ .+|.+|+|++|++|+|+
T Consensus         4 ~~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~-D~~~tL~~ygI~~g~~l~l~   82 (102)
T 1v5o_A            4 GSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLT-DDHCSLGSYGLKDGDMVVLL   82 (102)
T ss_dssp             CSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEEC-CSSSBHHHHTCCTTEEEEEC
T ss_pred             CCCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECC-CCcccHHHCCCCCCCEEEEE
Confidence            3457999995 333    79999999999999999999999999999999999999998 65 79999999999999999


Q ss_pred             eecccc
Q 019968          104 LRLSDL  109 (333)
Q Consensus       104 ~rlsd~  109 (333)
                      .+..++
T Consensus        83 ~~~~gg   88 (102)
T 1v5o_A           83 QKDNVG   88 (102)
T ss_dssp             BCCCCC
T ss_pred             ECCCCC
Confidence            887654

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.52  E-value=4.6e-14  Score=110.12  Aligned_cols=75  Identities=25%  Similarity=0.470  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      +..++.+.++++|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.+
T Consensus         9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A            9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV-ETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECC-TTCBTTTTTCCTTEEEEEECC
T ss_pred             cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECC-CcCCHHHCCCCCCCEEEEEEe
Confidence            345788888999999999999999999999999999999999999999999998 999999999999999998764

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.52  E-value=8.2e-16  Score=128.93  Aligned_cols=74  Identities=32%  Similarity=0.456  Sum_probs=0.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|++++++|++++||++||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||++++.
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~   74 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (128)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC--hHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999999864

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.52  E-value=1.8e-14  Score=117.68  Aligned_cols=77  Identities=26%  Similarity=0.298  Sum_probs=72.2

Q ss_pred             CcEEEEEE-e---CCeEEEEEecC-CCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           32 DSILIFLS-V---GGSVIPMRVME-SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        32 ~~M~I~Vt-~---~G~~~~i~V~~-sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ..|+|+|+ .   .|+.+.++|++ ++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++
T Consensus        26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~I~~g~~l~l~~r~  104 (111)
T 1we6_A           26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEECSS
T ss_pred             CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCcHHHCCCCCCCEEEEEEEc
Confidence            47999995 5   78999999998 99999999999999999999999999999998 9999999999999999999988


Q ss_pred             ccc
Q 019968          107 SDL  109 (333)
Q Consensus       107 sd~  109 (333)
                      .++
T Consensus       105 ~GG  107 (111)
T 1we6_A          105 RSG  107 (111)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            765

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.52  E-value=4.4e-14  Score=114.98  Aligned_cols=76  Identities=18%  Similarity=0.148  Sum_probs=68.6

Q ss_pred             CCCCcEEEEEE-eC--CeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCcccccccc-ccccceeeee
Q 019968           29 LSNDSILIFLS-VG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVL  104 (333)
Q Consensus        29 ~~~~~M~I~Vt-~~--G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI-~~gstV~Lv~  104 (333)
                      .++..|+|+|+ ..  +..++++|+|++||++||.+|+.+.|+|+++|||+|+|+.+. |+.+|.+||| ++|+++||++
T Consensus        20 ~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~-D~~TL~~ygI~~~G~t~hL~l   98 (105)
T 4dbg_A           20 TQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR-DQETLHSHGVRQNGDSAYLYL   98 (105)
T ss_dssp             CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC-TTCBTGGGTCCSTTCEEEEEE
T ss_pred             CCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc-CcCcHHHcCCCCCCCEEEEEE
Confidence            35778999994 54  489999999999999999999999999999999999999887 9999999999 6999999987


Q ss_pred             e
Q 019968          105 R  105 (333)
Q Consensus       105 r  105 (333)
                      -
T Consensus        99 ~   99 (105)
T 4dbg_A           99 L   99 (105)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.51  E-value=4.3e-14  Score=111.32  Aligned_cols=78  Identities=15%  Similarity=0.280  Sum_probs=70.7

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCC-----CCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           30 SNDSILIFLSVGGSVIPMRVMES-----DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~s-----dTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      +...|+|+|+..|+.+.++++++     +||.+||.+|+..+|+|+++|+|+|+|+.|.+++.+|.+|+|++|++|||+.
T Consensus         4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~   83 (92)
T 1wxv_A            4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG   83 (92)
T ss_dssp             CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred             CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence            35689999987889999999995     9999999999999999999999999999998337799999999999999987


Q ss_pred             ecc
Q 019968          105 RLS  107 (333)
Q Consensus       105 rls  107 (333)
                      +..
T Consensus        84 ~~~   86 (92)
T 1wxv_A           84 KKN   86 (92)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            653

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.51  E-value=4.9e-14  Score=109.95  Aligned_cols=72  Identities=18%  Similarity=0.192  Sum_probs=67.4

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      .+++++.+|+++.++|++++||++||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|+|+.++
T Consensus        13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~   84 (85)
T 2kd0_A           13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVL--PRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ   84 (85)
T ss_dssp             EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCC--TTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence            456778899999999999999999999999999999  999999999999999999999999999999998653

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.51  E-value=3.5e-14  Score=112.48  Aligned_cols=74  Identities=18%  Similarity=0.151  Sum_probs=68.9

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEeecCC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~-~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      ..|+|+|++.+|+.+.++|++++||.+||++|++..     +++|+|+|+|+.|+|+ .+|++|+|++|++|||+.+.+.
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ-----ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST-----TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC-----cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence            458999999999999999999999999999999987     4899999999999998 9999999999999999998653

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.51  E-value=3.4e-14  Score=115.51  Aligned_cols=76  Identities=18%  Similarity=0.159  Sum_probs=69.6

Q ss_pred             cccceeEeeeCC---cEEEEEE--------ecC-CchHHHHHHHHHhc--CCCCCCCc-eEEEECCeecCCCCcccccCC
Q 019968          108 DLQAITVTTVCG---KVFEFHV--------ERG-RNVGYVKQQIAKKG--REFVDLKN-QELICDGEELEDQRLITDICK  172 (333)
Q Consensus       108 d~m~I~Vkt~~G---k~~~l~V--------~~s-dTV~~LK~~I~~~~--Gip~~~~~-QrLif~Gk~LeD~~tL~dy~I  172 (333)
                      ..|+|+|++.+|   +++.+++        +++ +||.+||++|++.+  |+|  +++ |+|+|+|+.|+|+.+|++|+|
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip--~~~~qrLi~~Gk~L~D~~tL~~y~i   88 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP--DPELIDLIYCGRKLKDDQTLDFYGI   88 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC--CSSSEEEEETTEECCTTCBHHHHTC
T ss_pred             CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC--hhhcEEEEECCeECCCCCcHHHcCC
Confidence            358999999999   8899994        454 99999999999999  999  999 999999999999999999999


Q ss_pred             CCCCEEEEEeecC
Q 019968          173 RNEAVIHLLVRKS  185 (333)
Q Consensus       173 ~~gsvIhLv~r~~  185 (333)
                      ++|++|||+.+.+
T Consensus        89 ~~g~~i~lv~~~~  101 (107)
T 1x1m_A           89 QPGSTVHVLRKSW  101 (107)
T ss_dssp             CTTCEEEEEESSC
T ss_pred             CCCCEEEEEeCCC
Confidence            9999999998864

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.50  E-value=6.3e-14  Score=115.23  Aligned_cols=66  Identities=21%  Similarity=0.241  Sum_probs=63.5

Q ss_pred             CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +|++++++|++++||.+||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|.+|++|||++++.
T Consensus        44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~  109 (115)
T 1we7_A           44 NGQGLVFTLPLTDQVSVIKVKIHEATGMP--AGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKER  109 (115)
T ss_dssp             SSEEEEEEECSCSBTHHHHHHHHHHSSCC--TTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCC
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHCCC--hHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence            58899999999999999999999999999  9999999999999999999999999999999999864

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.50  E-value=6.1e-14  Score=113.52  Aligned_cols=77  Identities=19%  Similarity=0.266  Sum_probs=70.7

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ...|+|+|+ ..|+ +.++|++++||.+||.+|+..+|+++++|+|+|+|+.|. |+.+|.+|+|++|++|||+.++.++
T Consensus        15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~~   92 (106)
T 1wx7_A           15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQHR   92 (106)
T ss_dssp             SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC-TTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred             CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCCC
Confidence            567999996 5555 799999999999999999999999999999999999998 9999999999999999999987653

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.49  E-value=1.8e-14  Score=116.37  Aligned_cols=73  Identities=18%  Similarity=0.206  Sum_probs=64.1

Q ss_pred             cEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           33 SILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        33 ~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      +++|++.-   .++.++++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++| +++++.
T Consensus        17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~-D~~TL~~y~I~~gsti-~vl~lr   92 (100)
T 1wju_A           17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKA-MVLELK   92 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEE-EEECCC
T ss_pred             EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECC-CCCcHHHcCCCCCCEE-EEEEEC
Confidence            56666532   2688999999999999999999999999999999999999998 9999999999999999 555543

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.49  E-value=2e-15  Score=130.59  Aligned_cols=74  Identities=32%  Similarity=0.456  Sum_probs=0.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|++++++|++++||++||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||++++.
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~   74 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (152)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence            7899999999999999999999999999999999999  9999999999999999999999999999999999864

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.49  E-value=4e-14  Score=112.76  Aligned_cols=75  Identities=15%  Similarity=0.197  Sum_probs=69.8

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      +...|+|+|++.|+++.+++++++||.+||.+|+..+|+|+++|+|+|.|+.|+ |. +|.+|+|++|++|||+.+.
T Consensus        14 ~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~-tL~~~~i~~g~~i~lv~~~   88 (95)
T 1v86_A           14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DK-TLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SS-BHHHHCCCTTEEEEECCSS
T ss_pred             CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cC-cHHHCCCCCCCEEEEEecc
Confidence            467899999999999999999999999999999999999999999999999994 65 9999999999999998754

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.49  E-value=6.6e-14  Score=110.27  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=70.1

Q ss_pred             cccceeEeeeCCcEEEE-EEecCCchHHHHHHHHHhcCCCCCCCceEEE---ECCeecCCCCcccccCCCCCCEEEEEee
Q 019968          108 DLQAITVTTVCGKVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l-~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi---f~Gk~LeD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      ..|+|+|+. .|+++.+ +|++++||.+||++|++++|+|  +++|+|+   |+|+.|+|+.+|++|+|++|++|||+..
T Consensus         6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~   82 (90)
T 1v5t_A            6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred             ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence            458999986 7899999 9999999999999999999999  9999999   9999999999999999999999999876


Q ss_pred             cC
Q 019968          184 KS  185 (333)
Q Consensus       184 ~~  185 (333)
                      ..
T Consensus        83 ~~   84 (90)
T 1v5t_A           83 RE   84 (90)
T ss_dssp             CS
T ss_pred             Cc
Confidence            43

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=5.3e-14  Score=113.59  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=67.7

Q ss_pred             CCCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE--CCeecccCCccccccccccccceeeeeec
Q 019968           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        30 ~~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif--~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      +...|.+++ ++.|++++++|++++||.+||.+|++++|+|+++|+|+|  .|+ |. |+.+|++|+|+.|+++||+++.
T Consensus         5 ~~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            5 SSGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             CCCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSS
T ss_pred             CCcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecC
Confidence            344677776 799999999999999999999999999999999999986  455 87 9999999999999999998865


Q ss_pred             c
Q 019968          107 S  107 (333)
Q Consensus       107 s  107 (333)
                      .
T Consensus        83 ~   83 (100)
T 2dzm_A           83 L   83 (100)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.48  E-value=7.9e-14  Score=116.91  Aligned_cols=78  Identities=19%  Similarity=0.316  Sum_probs=70.3

Q ss_pred             CCcEEEEE-EeCCeEE-EEEecCCCCHHHHHHHH-----HHhhCCCC--cceEEEECCeecccCCccccccccccc----
Q 019968           31 NDSILIFL-SVGGSVI-PMRVMESDSIASVKLRI-----QSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADG----   97 (333)
Q Consensus        31 ~~~M~I~V-t~~G~~~-~i~V~~sdTV~~LK~kI-----~~~~gip~--~~Q~Lif~G~~L~~D~~tL~dygI~~g----   97 (333)
                      .+.|+|+| +++|+.+ ++++++++||.+||.+|     +.+.|+|+  ++|+|+|+|+.|+ |+.+|++|+|+.|    
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~Le-D~~TLsdy~I~~~~~~~   92 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG   92 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECc-CCCcHHHcCCCcCCccC
Confidence            57899999 5899888 79999999999999999     56778986  8999999999998 9999999999998    


Q ss_pred             --cceeeeeecccc
Q 019968           98 --NVLHLVLRLSDL  109 (333)
Q Consensus        98 --stV~Lv~rlsd~  109 (333)
                        .++||++++.++
T Consensus        93 ~v~tmhlVlrl~g~  106 (126)
T 1se9_A           93 AVTTMHVIIQAPVT  106 (126)
T ss_dssp             CCEEEEEEECCCSS
T ss_pred             CcEEEEEEeccCCc
Confidence              689999988754

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.5e-14  Score=116.71  Aligned_cols=75  Identities=27%  Similarity=0.426  Sum_probs=67.1

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ...|+|+|+.+|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|||++|++|+|+.+.
T Consensus        26 ~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~g~tI~lv~~~  100 (101)
T 3m63_B           26 AMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKSQ  100 (101)
T ss_dssp             ---CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECC-TTSBTTTTTCCTTEEEEECCCC
T ss_pred             CcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CcCcHHHCCCCCCCEEEEEeCC
Confidence            44566666668999999999999999999999999999999999999999998 9999999999999999998753

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.47  E-value=3.4e-15  Score=125.17  Aligned_cols=75  Identities=36%  Similarity=0.623  Sum_probs=0.0

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      |+|+| +++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|||++|++|+|++++.++
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~I~~gsti~l~~rl~GG   76 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   76 (128)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECC-CCCchhhhccCCCCEEEEEEEcCCC
Confidence            88999 578999999999999999999999999999999999999999998 9999999999999999999988765

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.47  E-value=1.2e-13  Score=109.39  Aligned_cols=75  Identities=15%  Similarity=0.218  Sum_probs=68.9

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCC-ccccccccccccceeeeeecc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~-~tL~dygI~~gstV~Lv~rls  107 (333)
                      +...|+|+|+ +.|+.+.++|++++||.+||.+|+...   +++|+|+|+|+.|. |+ .+|.+|+|++|++|||+.+.+
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~-D~~~tL~~y~i~~g~~i~l~~~~~   79 (95)
T 1wia_A            4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQ-DPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECC-CSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEcc-CCcCCHHHcCCCCCCEEEEEECCC
Confidence            4568999995 789999999999999999999999987   89999999999998 77 999999999999999998765


Q ss_pred             c
Q 019968          108 D  108 (333)
Q Consensus       108 d  108 (333)
                      .
T Consensus        80 ~   80 (95)
T 1wia_A           80 G   80 (95)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.47  E-value=1.3e-13  Score=113.25  Aligned_cols=77  Identities=26%  Similarity=0.424  Sum_probs=70.7

Q ss_pred             CcEEEEEEe-----------CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccce
Q 019968           32 DSILIFLSV-----------GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL  100 (333)
Q Consensus        32 ~~M~I~Vt~-----------~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV  100 (333)
                      ..++|+|+.           +|++++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~i~~g~~i  102 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMASGAVI  102 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC-TTSBHHHHTCCSSCEE
T ss_pred             CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC-CCCCHHHCCCCCCCEE
Confidence            367888853           4789999999999999999999999999999999999999998 9999999999999999


Q ss_pred             eeeeecccc
Q 019968          101 HLVLRLSDL  109 (333)
Q Consensus       101 ~Lv~rlsd~  109 (333)
                      ||++++.++
T Consensus       103 ~lv~rl~GG  111 (115)
T 1we7_A          103 HLALKERSG  111 (115)
T ss_dssp             EEEECCCSC
T ss_pred             EEEEEcCCC
Confidence            999988765

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.46  E-value=9e-14  Score=111.07  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=68.5

Q ss_pred             cccceeEeeeCCcEE-EEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~-~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +.|+|+|+. .|+++ .++|++++||.+||++|++++|+|  +++|+|+|+|+.|+|+ +|++|+|+++++|||+....
T Consensus         6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~   80 (96)
T 1wgg_A            6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred             cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence            458899985 78999 599999999999999999999999  9999999999999999 99999999999999987654

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.46  E-value=1e-13  Score=116.19  Aligned_cols=77  Identities=25%  Similarity=0.295  Sum_probs=69.1

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHH------hhCCC--CcceEEEECCeecccCCcccccccccccc--c
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQS------YNGFF--VKKQKLVFEGRELARSNSRVRDYGLADGN--V   99 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~------~~gip--~~~Q~Lif~G~~L~~D~~tL~dygI~~gs--t   99 (333)
                      ...|+|+|+ ++|++++++|++++||.+||.+|+.      +.|+|  +++|+|+|+|+.|+ |+.+|++|+|+.|+  +
T Consensus        15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~Le-D~~TL~~y~I~~~~~~t   93 (125)
T 2gow_A           15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV   93 (125)
T ss_dssp             TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEE-SSCBTGGGCCCTTSEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence            556999995 7899999999999999999999999      77884  89999999999998 99999999999765  7


Q ss_pred             eeeeeeccc
Q 019968          100 LHLVLRLSD  108 (333)
Q Consensus       100 V~Lv~rlsd  108 (333)
                      +||++|+..
T Consensus        94 lhlv~r~~~  102 (125)
T 2gow_A           94 MHLVARETL  102 (125)
T ss_dssp             EEEEECSCC
T ss_pred             EEEEecCCC
Confidence            888888753

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=5.2e-14  Score=113.64  Aligned_cols=73  Identities=14%  Similarity=0.121  Sum_probs=68.0

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE--CCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif--~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      .|++++++.+|++++++|++++||++||++|++++|+|  |++|+|+|  .|+ |+|+.+|++|+|++|++|||+++.
T Consensus         8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred             ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence            47888889999999999999999999999999999999  99999996  666 999999999999999999998874

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.45  E-value=2.2e-13  Score=107.28  Aligned_cols=75  Identities=19%  Similarity=0.214  Sum_probs=68.4

Q ss_pred             cccceeEeeeCCcEEEEEEecC-----CchHHHHHHHHHhcCCCCCCCceEEEECCeecCC-CCcccccCCCCCCEEEEE
Q 019968          108 DLQAITVTTVCGKVFEFHVERG-----RNVGYVKQQIAKKGREFVDLKNQELICDGEELED-QRLITDICKRNEAVIHLL  181 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~s-----dTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD-~~tL~dy~I~~gsvIhLv  181 (333)
                      ..|.|+|++ .|+.+.++|+++     .||.+||++|++.+|+|  +++|+|+|+|+.|.| +.+|++|+|++|++|||+
T Consensus         6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~   82 (92)
T 1wxv_A            6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI   82 (92)
T ss_dssp             SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred             CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC--HHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence            458899988 588999999995     99999999999999999  999999999999988 668999999999999998


Q ss_pred             eecC
Q 019968          182 VRKS  185 (333)
Q Consensus       182 ~r~~  185 (333)
                      .+..
T Consensus        83 ~~~~   86 (92)
T 1wxv_A           83 GKKN   86 (92)
T ss_dssp             SCCS
T ss_pred             ecCC
Confidence            8754

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.45  E-value=8.1e-14  Score=112.26  Aligned_cols=72  Identities=17%  Similarity=0.289  Sum_probs=63.4

Q ss_pred             CCcEEEEEE-eCCe--EEEEEecCCCCHHHHHHHHHHh-hCCC-CcceEEEECCeecccCCcccccc--ccccccceeee
Q 019968           31 NDSILIFLS-VGGS--VIPMRVMESDSIASVKLRIQSY-NGFF-VKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV  103 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~--~~~i~V~~sdTV~~LK~kI~~~-~gip-~~~Q~Lif~G~~L~~D~~tL~dy--gI~~gstV~Lv  103 (333)
                      ...|+|+|+ ++|+  .+++++++++||.+||.+|+++ .|.| +++|+|+|+|+.|+ |+.+|++|  +|++|++|||+
T Consensus        21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~-D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEEC-TTSBTHHHHTTTCSEEEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECC-CCCCHHHHhcCCCCCCEEEeC
Confidence            457999996 6676  6799999999999999999986 5666 59999999999998 99999999  99999999985

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.45  E-value=1.7e-13  Score=107.51  Aligned_cols=66  Identities=14%  Similarity=0.079  Sum_probs=60.4

Q ss_pred             CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE-------CCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-------DGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       118 ~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif-------~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .++.+..++++++||++||++|+.++|+|  +++|||+|       .|+.|+|+++|++|||++|++|||+-+.+
T Consensus        13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P   85 (86)
T 4b6w_A           13 RMRVPEKRYGLAQTIESIKENVFTHFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP   85 (86)
T ss_dssp             SCCEEEEEEETTSBHHHHHHHHHTTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred             CCeEEEEEcCccCcHHHHHHHHHHHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence            44667899999999999999999999999  99999996       58899999999999999999999987643

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.44  E-value=4.1e-13  Score=107.30  Aligned_cols=78  Identities=17%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             CCCCCCCcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC--Ce---ecccCCccccccccccc
Q 019968           26 PEKLSNDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GR---ELARSNSRVRDYGLADG   97 (333)
Q Consensus        26 ~~~~~~~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~--G~---~L~~D~~tL~dygI~~g   97 (333)
                      .+......+.|+|+.   .++.+++++.+++||++||.+|+..+|+|+++|+|+|.  |+   .|.+|+.+|++|+|++|
T Consensus         8 ~~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~g   87 (95)
T 2kjr_A            8 HSHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDG   87 (95)
T ss_dssp             CCCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSS
T ss_pred             cccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCC
Confidence            344456789999963   33589999999999999999999999999999999997  45   56449999999999999


Q ss_pred             cceeee
Q 019968           98 NVLHLV  103 (333)
Q Consensus        98 stV~Lv  103 (333)
                      ++|+|+
T Consensus        88 stihlv   93 (95)
T 2kjr_A           88 LRLHVV   93 (95)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            999986

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.44  E-value=3e-13  Score=108.11  Aligned_cols=74  Identities=11%  Similarity=0.161  Sum_probs=64.5

Q ss_pred             ccccceeEeeeCC--cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC--Ce---ec-CCCCcccccCCCCCCEE
Q 019968          107 SDLQAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD--GE---EL-EDQRLITDICKRNEAVI  178 (333)
Q Consensus       107 sd~m~I~Vkt~~G--k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~--Gk---~L-eD~~tL~dy~I~~gsvI  178 (333)
                      .+.+.|+|+...+  +.+++++++++||++||++|+.++|+|  +++|||+|.  |+   .| +|+++|++|+|++|++|
T Consensus        13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti   90 (95)
T 2kjr_A           13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL   90 (95)
T ss_dssp             CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred             CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence            4456777776555  478999999999999999999999999  999999997  55   55 89999999999999999


Q ss_pred             EEEe
Q 019968          179 HLLV  182 (333)
Q Consensus       179 hLv~  182 (333)
                      ||+-
T Consensus        91 hlvD   94 (95)
T 2kjr_A           91 HVVD   94 (95)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9963

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.43  E-value=9.5e-15  Score=126.37  Aligned_cols=75  Identities=36%  Similarity=0.623  Sum_probs=0.0

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      |+|+| +++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++++.++
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstL~Lvlrl~GG   76 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcc-ccCcHHHcCCCCCCEEEEEeeccCC
Confidence            88999 478999999999999999999999999999999999999999998 9999999999999999999987664

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.3e-13  Score=108.63  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=64.5

Q ss_pred             ccceeEeeeCCcEE--EE-EEecCCchHHHHHHHHH-hcCCCCCCCceEEEEC--CeecCCCCcccccCCCCCCEEEE
Q 019968          109 LQAITVTTVCGKVF--EF-HVERGRNVGYVKQQIAK-KGREFVDLKNQELICD--GEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~--~l-~V~~sdTV~~LK~~I~~-~~Gip~~~~~QrLif~--Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      .|+|+|++..|+.+  ++ +|++++||++||++|++ +.|+|  +++|||+|.  |+.|+|+.+|++|+|.++++||+
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            48999999998775  58 99999999999999999 48999  999999976  99999999999999999999886

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.40  E-value=2.1e-14  Score=128.15  Aligned_cols=69  Identities=20%  Similarity=0.237  Sum_probs=0.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|+|++|++++++|++++||.+||++|++.+|+|  +++|+|+|+|++|+|+.+|+     ++++|||++|+.
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLr   69 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFE--IDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLL   69 (189)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcC--hhHEEEEecCeECCCCCccc-----CCCEEEEEEecC
Confidence            7899999999999999999999999999999999999  99999999999999999999     899999999964

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.40  E-value=5.9e-13  Score=104.49  Aligned_cols=72  Identities=18%  Similarity=0.132  Sum_probs=63.9

Q ss_pred             cEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE-------CCeecccCCccccccccccccceee
Q 019968           33 SILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-------EGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        33 ~M~I~Vt---~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif-------~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      .++|+|+   .+.+.++..+++++||.+||.+|+..+|+|+++|+|+|       .|+.|+ |+++|++|||++|++|||
T Consensus         2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~-d~~tL~~Y~i~~g~~ihl   80 (86)
T 4b6w_A            2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMA-NDKQLGYYQCRDEFVIHV   80 (86)
T ss_dssp             EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCC-TTSBGGGGTCCTTCEEEE
T ss_pred             EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcC-CCCCHHHCCCCCCCEEEE
Confidence            3677776   34577899999999999999999999999999999996       478887 999999999999999999


Q ss_pred             eee
Q 019968          103 VLR  105 (333)
Q Consensus       103 v~r  105 (333)
                      +-+
T Consensus        81 vd~   83 (86)
T 4b6w_A           81 VDL   83 (86)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            864

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.40  E-value=6.4e-13  Score=126.79  Aligned_cols=77  Identities=31%  Similarity=0.440  Sum_probs=72.4

Q ss_pred             cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      .+..|+|+|++.+|+++.++|++++||++||++|+++.|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|||++|+
T Consensus       230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL  306 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  306 (307)
T ss_dssp             SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence            45679999999999999999999999999999999999999  999999999999999999999999999999999885

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.40  E-value=2.1e-13  Score=108.54  Aligned_cols=72  Identities=17%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      .|+|+|+ ..|+++.++|+++.||.+||++|++.+|+|  +++|+|+|.|+.|+| .+|++|+|+++++|||+.+.
T Consensus        17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~   88 (95)
T 1v86_A           17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP--PAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC--STTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred             eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence            4778887 578999999999999999999999999999  999999999999954 59999999999999998764

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=107.99  Aligned_cols=90  Identities=11%  Similarity=0.152  Sum_probs=76.8

Q ss_pred             CCCCcEEEEEE--eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           29 LSNDSILIFLS--VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        29 ~~~~~M~I~Vt--~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      .....+.|.|+  ..+..+++++.++.||.+||.+++...++|+++|+|+|+|+.|. |+.||.+|||++|.+|||+.+.
T Consensus        11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLK-D~eTL~~~gIk~g~TIhLvi~s   89 (118)
T 2daf_A           11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILK-NNETLVQHGVKPQEIVQVEIFS   89 (118)
T ss_dssp             CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEEC-SSCCHHHHSCCSSCEEEEEEEE
T ss_pred             ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcC-CcchHHHcCCCCCCEEEEEEec
Confidence            34556777775  45789999999999999999999999999999999999999998 9999999999999999999987


Q ss_pred             ccccceeEeeeCC
Q 019968          107 SDLQAITVTTVCG  119 (333)
Q Consensus       107 sd~m~I~Vkt~~G  119 (333)
                      .+.-..-+|...|
T Consensus        90 ~~p~~~p~~~~~~  102 (118)
T 2daf_A           90 TNPDLYPVRRIDG  102 (118)
T ss_dssp             SCTTTSCCCCCCS
T ss_pred             CCCccCcceeccC
Confidence            6654444455444

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.38  E-value=9.4e-13  Score=105.65  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=65.5

Q ss_pred             CCCcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCe---e---cccCCccccccccccccce
Q 019968           30 SNDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR---E---LARSNSRVRDYGLADGNVL  100 (333)
Q Consensus        30 ~~~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~---~---L~~D~~tL~dygI~~gstV  100 (333)
                      +...+.|+|+.   .+..+++++.+++||++||.+|+..+|+|+++|+|+|.|+   .   |.+|+.+|.+|+|++|++|
T Consensus        11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I   90 (97)
T 2kj6_A           11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL   90 (97)
T ss_dssp             CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred             CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence            46789999974   3357999999999999999999999999999999999883   3   4349999999999999999


Q ss_pred             eeee
Q 019968          101 HLVL  104 (333)
Q Consensus       101 ~Lv~  104 (333)
                      +|+-
T Consensus        91 hlvd   94 (97)
T 2kj6_A           91 HIID   94 (97)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9874

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.1e-12  Score=108.25  Aligned_cols=74  Identities=8%  Similarity=0.131  Sum_probs=67.5

Q ss_pred             cceeEe-eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVT-TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vk-t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +.|.|+ +..|+.+++.++++.||.+||+.++...++|  +++|+|+|+||.|.|+.||.+|||++|.+|||+.+..
T Consensus        16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~   90 (118)
T 2daf_A           16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP--HSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST   90 (118)
T ss_dssp             EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC--TTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred             EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC--hHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence            445554 5567889999999999999999999999999  9999999999999999999999999999999999864

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=8.5e-13  Score=103.91  Aligned_cols=72  Identities=13%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             CCCcEEEEE-EeCCeEE--EE-EecCCCCHHHHHHHHHHh-hCCCCcceEEEEC--CeecccCCccccccccccccceee
Q 019968           30 SNDSILIFL-SVGGSVI--PM-RVMESDSIASVKLRIQSY-NGFFVKKQKLVFE--GRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        30 ~~~~M~I~V-t~~G~~~--~i-~V~~sdTV~~LK~kI~~~-~gip~~~Q~Lif~--G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      +...|+|+| ++.|+.+  ++ +|.|++||.+||.+|++. .|+|+++|+|+|.  |+.|. |+.+|++|+|.+|++|++
T Consensus         7 ~~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~-D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A            7 GMKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK-DEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CCCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCC-TTCBTTTSSCCSEEEEEE
T ss_pred             ceEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcC-CCCCHHHcCCCCCCEEEE
Confidence            345699999 5777664  58 999999999999999994 8999999999976  99998 999999999999999775

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.36  E-value=6.6e-13  Score=107.84  Aligned_cols=76  Identities=16%  Similarity=0.185  Sum_probs=67.7

Q ss_pred             CCcEEEEEE-eCC---eEEEEEec--------C-CCCHHHHHHHHHHhh--CCCCcc-eEEEECCeecccCCcccccccc
Q 019968           31 NDSILIFLS-VGG---SVIPMRVM--------E-SDSIASVKLRIQSYN--GFFVKK-QKLVFEGRELARSNSRVRDYGL   94 (333)
Q Consensus        31 ~~~M~I~Vt-~~G---~~~~i~V~--------~-sdTV~~LK~kI~~~~--gip~~~-Q~Lif~G~~L~~D~~tL~dygI   94 (333)
                      ...|+|+|+ ..+   +.+.+++.        + ++||.+||.+|+..+  |+|+++ |+|+|+|+.|. |+.+|.+|+|
T Consensus        10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~-D~~tL~~y~i   88 (107)
T 1x1m_A           10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGI   88 (107)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTC
T ss_pred             CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECC-CCCcHHHcCC
Confidence            346999996 566   68999954        4 499999999999999  999999 99999999998 9999999999


Q ss_pred             ccccceeeeeecc
Q 019968           95 ADGNVLHLVLRLS  107 (333)
Q Consensus        95 ~~gstV~Lv~rls  107 (333)
                      ++|++|||+.+..
T Consensus        89 ~~g~~i~lv~~~~  101 (107)
T 1x1m_A           89 QPGSTVHVLRKSW  101 (107)
T ss_dssp             CTTCEEEEEESSC
T ss_pred             CCCCEEEEEeCCC
Confidence            9999999998754

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.35  E-value=1.2e-12  Score=104.99  Aligned_cols=72  Identities=15%  Similarity=0.093  Sum_probs=61.6

Q ss_pred             cceeEeeeCC--cEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCe---e---c-CCCCcccccCCCCCCEEEE
Q 019968          110 QAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE---E---L-EDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       110 m~I~Vkt~~G--k~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk---~---L-eD~~tL~dy~I~~gsvIhL  180 (333)
                      +.++|.....  ..++++|++++||++||++|+.++|+|  +++|||+|.|+   .   | +|+++|++|+|++|++|||
T Consensus        15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl   92 (97)
T 2kj6_A           15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI   92 (97)
T ss_dssp             EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred             EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence            4556654333  478999999999999999999999999  99999999883   3   4 8999999999999999999


Q ss_pred             Eee
Q 019968          181 LVR  183 (333)
Q Consensus       181 v~r  183 (333)
                      +-.
T Consensus        93 vd~   95 (97)
T 2kj6_A           93 IDL   95 (97)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            753

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.34  E-value=1e-12  Score=128.41  Aligned_cols=75  Identities=21%  Similarity=0.308  Sum_probs=69.7

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHH---hcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEE-EEEee
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK---KGREFVDLKNQELICDGEELEDQRLITDICKRNEAVI-HLLVR  183 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~---~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvI-hLv~r  183 (333)
                      ..|+|+||+.+|+++.++|++++||.+||.+|++   +.|+|  +++|||+|+|+.|+|+++|++|+|+++++| ||+.|
T Consensus         6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k   83 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   83 (368)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence            4599999999999999999999999999999999   67899  999999999999999999999999999998 66666


Q ss_pred             c
Q 019968          184 K  184 (333)
Q Consensus       184 ~  184 (333)
                      .
T Consensus        84 ~   84 (368)
T 1oqy_A           84 T   84 (368)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.31  E-value=1.6e-12  Score=105.76  Aligned_cols=74  Identities=15%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             ccceeEeeeCCcEEEEEEe-cCCchHHHHHHHHHhcCCCCCCCceEEEECCe-----------e----cCCCCcccccCC
Q 019968          109 LQAITVTTVCGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGE-----------E----LEDQRLITDICK  172 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~-~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk-----------~----LeD~~tL~dy~I  172 (333)
                      .|.|.||+.+|+. .++|+ +++||.+||++|++++|+|  +++|+|+|.|+           .    ++|+.+|++|||
T Consensus         7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi   83 (107)
T 1wf9_A            7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL   83 (107)
T ss_dssp             CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred             eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcC--cccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence            4889999999976 79999 9999999999999999999  99999999888           4    589999999999


Q ss_pred             CCCCEEEEEeecC
Q 019968          173 RNEAVIHLLVRKS  185 (333)
Q Consensus       173 ~~gsvIhLv~r~~  185 (333)
                      ++|++|||+....
T Consensus        84 ~~G~~L~l~~~~~   96 (107)
T 1wf9_A           84 AHGSMVYLAYEGE   96 (107)
T ss_dssp             CTTCEEECCCSSC
T ss_pred             CCCCEEEEEeCCC
Confidence            9999999986643

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.31  E-value=3.7e-12  Score=121.55  Aligned_cols=76  Identities=37%  Similarity=0.635  Sum_probs=70.5

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ....|+|+|+ ++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++|+
T Consensus       230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~-D~~TLsdygI~~gstL~LvlRL  306 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRL  306 (307)
T ss_dssp             SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC--
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC-CCCCHHHcCCCCCCEEEEEEeC
Confidence            3568999996 68999999999999999999999999999999999999999998 9999999999999999999876

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.30  E-value=5.4e-12  Score=100.21  Aligned_cols=72  Identities=21%  Similarity=0.285  Sum_probs=63.3

Q ss_pred             cEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC---ee---cccCCccccccccccccceeeee
Q 019968           33 SILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---RE---LARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        33 ~M~I~Vt~~G~--~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G---~~---L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      .+.|+|+..+.  .+++++.+++||.+||.+|+..+|+|+++|+|+|.|   +.   |.+|+.+|.+|||++|++||++-
T Consensus         7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            47888876555  699999999999999999999999999999999986   43   43499999999999999999875

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.29  E-value=2.8e-13  Score=120.85  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=0.4

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m  110 (333)
                      |+|+| +++|++++++|++++||.+||.+|+..+|+|+++|+|+|+|++|+ |+.+|+     ++++|||++|+.++.
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~Le-D~~TLs-----~~STLhLvlRLrGG~   72 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-NTELVT-----DDVTYYLSLKLLGGK   72 (189)
T ss_dssp             -----------------------------------------------------------------------------C
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECC-CCCccc-----CCCEEEEEEecCCCc
Confidence            89999 589999999999999999999999999999999999999999998 999998     899999999887753

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.28  E-value=1.1e-11  Score=103.10  Aligned_cols=74  Identities=16%  Similarity=0.248  Sum_probs=64.6

Q ss_pred             CcEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC---e---ecccCCccccccccccccceeee
Q 019968           32 DSILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---R---ELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        32 ~~M~I~Vt~~G~--~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G---~---~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      ..|.|+|+..+.  .+++++.+++||++||.+|+..+|+|+++|+|+|.|   +   .|.+|+.+|.+|||++|++|||+
T Consensus         5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv   84 (122)
T 1t0y_A            5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   84 (122)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence            368888875554  689999999999999999999999999999999987   4   34349999999999999999998


Q ss_pred             ee
Q 019968          104 LR  105 (333)
Q Consensus       104 ~r  105 (333)
                      ..
T Consensus        85 d~   86 (122)
T 1t0y_A           85 DV   86 (122)
T ss_dssp             EC
T ss_pred             eC
Confidence            64

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.27  E-value=1.4e-11  Score=98.16  Aligned_cols=76  Identities=13%  Similarity=0.268  Sum_probs=72.1

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ..|+|.|++.+|+.+.++|.+++++..|+..++++.|++  +++|||+|+|++|.++.|+++|++++|++||+++++.
T Consensus         6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~   81 (94)
T 2io1_B            6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   81 (94)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred             CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            458899999999999999999999999999999999999  9999999999999999999999999999999998753

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.27  E-value=3.7e-12  Score=124.41  Aligned_cols=79  Identities=23%  Similarity=0.462  Sum_probs=69.7

Q ss_pred             CCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHH---hhCCCCcceEEEECCeecccCCccccccccccccce-eee
Q 019968           29 LSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQS---YNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL-HLV  103 (333)
Q Consensus        29 ~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~---~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV-~Lv  103 (333)
                      .+...|+|+|+ ++|+++.++|++++||.+||.+|+.   +.|+|+++|+|+|+|+.|. |+.+|.+|+|++|++| +|+
T Consensus         3 ~~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv   81 (368)
T 1oqy_A            3 LGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV   81 (368)
T ss_dssp             ---CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred             CCCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC-CcCCHHHcCCCCCCEEEEEE
Confidence            35678999995 6899999999999999999999999   6789999999999999998 9999999999999998 666


Q ss_pred             eeccc
Q 019968          104 LRLSD  108 (333)
Q Consensus       104 ~rlsd  108 (333)
                      .|...
T Consensus        82 ~k~~~   86 (368)
T 1oqy_A           82 TKTKA   86 (368)
T ss_dssp             ECCCS
T ss_pred             ecCCC
Confidence            66643

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.26  E-value=7.5e-12  Score=99.38  Aligned_cols=72  Identities=13%  Similarity=0.047  Sum_probs=61.1

Q ss_pred             cceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC---ee----cCCCCcccccCCCCCCEEEEE
Q 019968          110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EE----LEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G---k~----LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      +.|.|+..... .+.+++++++||++||++|+.++|+|  +++|||+|.|   +.    ++|+++|++|+|++|++||++
T Consensus         8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~   85 (95)
T 1v6e_A            8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence            44556543332 68899999999999999999999999  9999999986   43    489999999999999999997


Q ss_pred             ee
Q 019968          182 VR  183 (333)
Q Consensus       182 ~r  183 (333)
                      -.
T Consensus        86 d~   87 (95)
T 1v6e_A           86 DH   87 (95)
T ss_dssp             CC
T ss_pred             EC
Confidence            54

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.25  E-value=5.7e-12  Score=102.43  Aligned_cols=76  Identities=18%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             CCCcEEEEEE-eCCeEEEEEec-CCCCHHHHHHHHHHhhCCCCcceEEEECCe-----------ec---ccCCccccccc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGR-----------EL---ARSNSRVRDYG   93 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~-~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~-----------~L---~~D~~tL~dyg   93 (333)
                      +...|+|+|+ .+|.. .++|+ +++||.+||.+|+..+|+|+++|+|+|.|+           .|   .+|+.+|++||
T Consensus         4 ~~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~g   82 (107)
T 1wf9_A            4 GSSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLN   82 (107)
T ss_dssp             SCCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTC
T ss_pred             CCCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCC
Confidence            3456999995 67765 79999 999999999999999999999999999888           43   34999999999


Q ss_pred             cccccceeeeeec
Q 019968           94 LADGNVLHLVLRL  106 (333)
Q Consensus        94 I~~gstV~Lv~rl  106 (333)
                      |++|++|||....
T Consensus        83 i~~G~~L~l~~~~   95 (107)
T 1wf9_A           83 LAHGSMVYLAYEG   95 (107)
T ss_dssp             CCTTCEEECCCSS
T ss_pred             CCCCCEEEEEeCC
Confidence            9999999998653

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.22  E-value=2.7e-11  Score=100.67  Aligned_cols=74  Identities=15%  Similarity=0.168  Sum_probs=63.1

Q ss_pred             ccceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC---e---ec-CCCCcccccCCCCCCEEEE
Q 019968          109 LQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---E---EL-EDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       109 ~m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G---k---~L-eD~~tL~dy~I~~gsvIhL  180 (333)
                      .+.|.|+...+. .+++++++++||++||++|+.++|+|  +++|||+|.|   +   +| +|+++|++|||++|++|||
T Consensus         6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv   83 (122)
T 1t0y_A            6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA   83 (122)
T ss_dssp             EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred             EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence            456667554432 68899999999999999999999999  9999999977   4   34 8999999999999999999


Q ss_pred             Eeec
Q 019968          181 LVRK  184 (333)
Q Consensus       181 v~r~  184 (333)
                      +...
T Consensus        84 vd~~   87 (122)
T 1t0y_A           84 VDVT   87 (122)
T ss_dssp             EECT
T ss_pred             EeCC
Confidence            8653

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.20  E-value=1.7e-11  Score=117.69  Aligned_cols=77  Identities=17%  Similarity=0.308  Sum_probs=69.3

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE---ECCeecccCCccccccccccccceeeeeecc
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li---f~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      .+.|.|+|+.+|+.+++++++++||++||.+|++.+|+|+++|+|+   |+|+.|. |+.+|++|+|++|++|+|+....
T Consensus         3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~-D~~~L~~~~ik~g~~l~L~gs~~   81 (320)
T 3shq_A            3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA-DNVKISALELKPNFKLMMVGSTE   81 (320)
T ss_dssp             -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC-TTSBTTSSCCC--CEEEEECCCC
T ss_pred             CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC-ccccHHHcCCCCCCEEEEEccch
Confidence            4578999999999999999999999999999999999999999999   8999998 99999999999999999987654


Q ss_pred             c
Q 019968          108 D  108 (333)
Q Consensus       108 d  108 (333)
                      +
T Consensus        82 ~   82 (320)
T 3shq_A           82 A   82 (320)
T ss_dssp             -
T ss_pred             h
Confidence            4

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.19  E-value=4.6e-11  Score=95.18  Aligned_cols=79  Identities=13%  Similarity=0.291  Sum_probs=73.2

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      ..+.|+|+|+ .+|+.+.+.|.+++++..|+.+++++.|+++++++|+|+|++|. ++.|.++|++.+|++|+++++..+
T Consensus         4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~~~G   82 (94)
T 2io1_B            4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTG   82 (94)
T ss_dssp             --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECCEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccC
Confidence            3567999995 78999999999999999999999999999999999999999998 999999999999999999998876


Q ss_pred             c
Q 019968          109 L  109 (333)
Q Consensus       109 ~  109 (333)
                      +
T Consensus        83 G   83 (94)
T 2io1_B           83 G   83 (94)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.16  E-value=3.1e-11  Score=94.05  Aligned_cols=71  Identities=11%  Similarity=0.076  Sum_probs=63.5

Q ss_pred             cceeEeeeCCcEEEEE-EecCCchHHHHHHHHHhcCCCCCCCceEEEEC--CeecC---CCCcccccCCCCCCEEEEEee
Q 019968          110 QAITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICD--GEELE---DQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~-V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~--Gk~Le---D~~tL~dy~I~~gsvIhLv~r  183 (333)
                      |+|.|++.+|+. .+. +++++||.+||++|++++|+|  +++|+|+|+  ++.|+   |+.+|++|||.+|++||+.-.
T Consensus         1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            789999999965 477 999999999999999999999  999999987  48874   688999999999999998654

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.15  E-value=1.1e-10  Score=88.10  Aligned_cols=70  Identities=13%  Similarity=0.264  Sum_probs=67.2

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      |.|.|++.+|+.+.+.|.+++++..|+...+++.|++  +.+++|+|+|++|.++.|.++|++++|++|+++
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            5688899999999999999999999999999999999  999999999999999999999999999999986

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.15  E-value=1.8e-10  Score=91.31  Aligned_cols=76  Identities=13%  Similarity=0.268  Sum_probs=71.7

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ..|.|.|++.+|+.+.+.|.+++++..|+...+++.|++  +.+++|+|+|++|.++.|.++|++++|++|+++....
T Consensus         4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~   79 (91)
T 2io0_B            4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   79 (91)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC--STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            457889999999999999999999999999999999999  9999999999999999999999999999999998754

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.07  E-value=4.5e-10  Score=86.46  Aligned_cols=73  Identities=12%  Similarity=0.124  Sum_probs=68.6

Q ss_pred             ccccceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          107 SDLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      +..|.|.|++.+|+ .+.+.|.+++++..|+...+++.|++  +++++|+|+|+.|.++.|..+|++++|++||+.
T Consensus         5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS--GHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT--TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            35688899999996 89999999999999999999999999  999999999999999999999999999999985

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.07  E-value=4.5e-10  Score=89.17  Aligned_cols=76  Identities=13%  Similarity=0.266  Sum_probs=71.3

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      ...|.|.|++.+|+.+.+.|.+++++..|+...+++.|++  +++++|+|+|+.|.++.|..+|++.+|++||+++++
T Consensus        15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q   90 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ   90 (93)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred             CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence            3457888899999999999999999999999999999999  999999999999999999999999999999998865

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.06  E-value=1.4e-10  Score=111.24  Aligned_cols=75  Identities=16%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE---ECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi---f~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .|.|.|+. +|++++++|++++||++||++|++++|+|  +++|+|+   |+|+.|.|+.+|++|+|++|++|||+....
T Consensus         5 ~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~   81 (320)
T 3shq_A            5 EVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE   81 (320)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred             eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence            36678874 79999999999999999999999999999  9999999   899999999999999999999999987755


Q ss_pred             C
Q 019968          186 A  186 (333)
Q Consensus       186 ~  186 (333)
                      .
T Consensus        82 ~   82 (320)
T 3shq_A           82 A   82 (320)
T ss_dssp             -
T ss_pred             h
Confidence            4

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.04  E-value=2.4e-10  Score=88.96  Aligned_cols=71  Identities=13%  Similarity=0.199  Sum_probs=61.3

Q ss_pred             EEEEEE-eCCeEEEEE-ecCCCCHHHHHHHHHHhhCCCCcceEEEEC--Ceecc--cCCccccccccccccceeeeee
Q 019968           34 ILIFLS-VGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA--RSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~-V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~--G~~L~--~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      |+|.|+ .+|+ ..+. +++++||.+||.+|++++|+|+++|+|+|+  ++.|.  +|+.+|++|||.+|++|++...
T Consensus         1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            789996 5664 4588 999999999999999999999999999986  47773  3688999999999999998754

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.04  E-value=6.7e-10  Score=87.96  Aligned_cols=78  Identities=13%  Similarity=0.301  Sum_probs=72.4

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      .+.|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|.++|++.+|++|+++.+..++
T Consensus         3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~gg   81 (91)
T 2io0_B            3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG   81 (91)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence            357899995 78999999999999999999999999999999999999999998 9999999999999999999887665

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.02  E-value=1.9e-09  Score=87.75  Aligned_cols=85  Identities=13%  Similarity=0.246  Sum_probs=74.4

Q ss_pred             CCCCCCCCCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceee
Q 019968           23 THRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        23 ~~~~~~~~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      +..+.......|+|.|+-+|+.+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|..+|++.+|++|++
T Consensus        21 ~~~~~~~~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl~medgD~Idv   99 (106)
T 2eke_C           21 EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEA   99 (106)
T ss_dssp             CCCCCCCCCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEE
T ss_pred             ccCCCCCCCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHcCCCCCCEEEE
Confidence            3444444567899999338999999999999999999999999999999999999999998 999999999999999999


Q ss_pred             eeeccc
Q 019968          103 VLRLSD  108 (333)
Q Consensus       103 v~rlsd  108 (333)
                      +++..+
T Consensus       100 ~~~q~G  105 (106)
T 2eke_C          100 HREQIG  105 (106)
T ss_dssp             EECC--
T ss_pred             Eeeccc
Confidence            887654

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.01  E-value=1.1e-09  Score=89.09  Aligned_cols=75  Identities=11%  Similarity=0.201  Sum_probs=70.7

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      +..|.|.|++ +|+.+.+.|.+++++..|+...+++.|++  +.+++|+|+|+.|.++.|.++|++++|++|++++++
T Consensus        29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q  103 (106)
T 2eke_C           29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ  103 (106)
T ss_dssp             CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred             CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC--cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence            3558899999 99999999999999999999999999999  999999999999999999999999999999998865

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.01  E-value=1.2e-09  Score=86.77  Aligned_cols=78  Identities=13%  Similarity=0.324  Sum_probs=71.0

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      +...|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|..+|++.+|++|+++++..+
T Consensus        14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G   92 (93)
T 2d07_B           14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTG   92 (93)
T ss_dssp             -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC--
T ss_pred             CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeeccC
Confidence            3568999995 78899999999999999999999999999999999999999998 999999999999999999987654

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.00  E-value=5.4e-10  Score=90.63  Aligned_cols=77  Identities=13%  Similarity=0.269  Sum_probs=71.9

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ...|.|.|++.+|+.+.+.|.+++++..|+...+++.|++  +.++||+|+|+.|.++.|..+|++++|++||+++++.
T Consensus        22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~   98 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   98 (104)
T ss_dssp             SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            3467888999999999999999999999999999999999  9999999999999999999999999999999987754

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.98  E-value=1e-09  Score=87.26  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             CCcEEEEEE----eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC-------eecccCCccccccccccccc
Q 019968           31 NDSILIFLS----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-------RELARSNSRVRDYGLADGNV   99 (333)
Q Consensus        31 ~~~M~I~Vt----~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G-------~~L~~D~~tL~dygI~~gst   99 (333)
                      ...++|+|+    .+|..+...+.+++||++||.+|+..+|+|+..|+|+|.+       ..|.+|+.+|.+|+|.+|++
T Consensus         7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~   86 (97)
T 1wjn_A            7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC   86 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred             CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence            345777775    4678899999999999999999999999999999999863       23767999999999999999


Q ss_pred             eeeeee
Q 019968          100 LHLVLR  105 (333)
Q Consensus       100 V~Lv~r  105 (333)
                      ||+...
T Consensus        87 I~V~d~   92 (97)
T 1wjn_A           87 LLVRWS   92 (97)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            999764

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.98  E-value=1.4e-09  Score=81.97  Aligned_cols=69  Identities=12%  Similarity=0.322  Sum_probs=65.7

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      |+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++++++++|+|+.|. ++.|.++|++.+|++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence            788885 78999999999999999999999999999999999999999998 9999999999999999885

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=98.97  E-value=2e-09  Score=88.12  Aligned_cols=80  Identities=10%  Similarity=0.237  Sum_probs=74.0

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      ....|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++.+++|+|+|++|. ++.|..+|++.+|++|++++...+
T Consensus        23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~-~~~Tp~dl~mEDgD~Idv~~~q~G  101 (110)
T 2k8h_A           23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPID-ETKTPEELGMEDDDVIDAMVEQTG  101 (110)
T ss_dssp             CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCC-SSSHHHHHHCSSEEEEEEECCCCC
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEcccC
Confidence            4578999995 78899999999999999999999999999999999999999998 999999999999999999988776


Q ss_pred             cc
Q 019968          109 LQ  110 (333)
Q Consensus       109 ~m  110 (333)
                      +.
T Consensus       102 g~  103 (110)
T 2k8h_A          102 GL  103 (110)
T ss_dssp             C-
T ss_pred             cc
Confidence            54

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.96  E-value=2e-09  Score=82.81  Aligned_cols=73  Identities=12%  Similarity=0.277  Sum_probs=68.0

Q ss_pred             CCCcEEEEEE-eCCe-EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968           30 SNDSILIFLS-VGGS-VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~-~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      ..+.|+|.|+ .+|+ .+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|..+|++.+|++|++.
T Consensus         4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHHTCCTTCEEEEE
T ss_pred             CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence            4568999995 7885 8999999999999999999999999999999999999998 9999999999999999874

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=98.95  E-value=8.1e-10  Score=90.49  Aligned_cols=78  Identities=15%  Similarity=0.275  Sum_probs=72.8

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      +..|.|.|++.+|+.+.+.|.+++++..|+...+++.|++  +.+++|+|+|++|.++.|..+|++++|++|++++....
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G  101 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS--RNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG  101 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence            4568899999999999999999999999999999999999  99999999999999999999999999999999887643

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.94  E-value=1.8e-09  Score=87.54  Aligned_cols=79  Identities=13%  Similarity=0.303  Sum_probs=73.3

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      ....|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++++++|+|+|+.|. ++.|..+|++.+|++|+++++..+
T Consensus        21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G   99 (104)
T 1wz0_A           21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTS   99 (104)
T ss_dssp             CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTTTTCCTTEEEEECCCCCC
T ss_pred             CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccC
Confidence            3568999995 78999999999999999999999999999999999999999998 999999999999999999987765


Q ss_pred             c
Q 019968          109 L  109 (333)
Q Consensus       109 ~  109 (333)
                      +
T Consensus       100 G  100 (104)
T 1wz0_A          100 G  100 (104)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.86  E-value=7.8e-09  Score=82.06  Aligned_cols=72  Identities=13%  Similarity=0.079  Sum_probs=61.1

Q ss_pred             cceeEee---eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC-------eec-CCCCcccccCCCCCCEE
Q 019968          110 QAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-------EEL-EDQRLITDICKRNEAVI  178 (333)
Q Consensus       110 m~I~Vkt---~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G-------k~L-eD~~tL~dy~I~~gsvI  178 (333)
                      +.|.|+.   .+|+.+..++.++.||++||.+|+..+|+|  +..|+|.|.+       ..| +|.++|++|++.+|++|
T Consensus        10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I   87 (97)
T 1wjn_A           10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL   87 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred             EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence            4455543   467788999999999999999999999999  9999999863       235 67899999999999999


Q ss_pred             EEEee
Q 019968          179 HLLVR  183 (333)
Q Consensus       179 hLv~r  183 (333)
                      |+...
T Consensus        88 ~V~d~   92 (97)
T 1wjn_A           88 LVRWS   92 (97)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            99764

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.52  E-value=4.6e-07  Score=74.60  Aligned_cols=75  Identities=12%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      +.+.|.|++.+|+.+.+.|.+++++..|+...+++.|++  +.+++++|+|+.|.++.|..++++.+|++|+++...
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q  113 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ  113 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--TTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC--hhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence            346777888889999999999999999999999999999  999999999999999999999999999999998753

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.48  E-value=5.1e-07  Score=81.10  Aligned_cols=78  Identities=12%  Similarity=0.234  Sum_probs=73.2

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      ....++|.|+.+|+...+.|.+++++..|+...+++.|+++++++++|+|++|. ++.|..++++.+|++|++.....+
T Consensus        26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~dL~MEdgD~Idv~~~q~g  103 (200)
T 3pge_A           26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIG  103 (200)
T ss_dssp             CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCSC
T ss_pred             CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCc
Confidence            366799999888999999999999999999999999999999999999999998 999999999999999999988754

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.40  E-value=1.6e-06  Score=77.90  Aligned_cols=76  Identities=11%  Similarity=0.178  Sum_probs=69.5

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .+-+.|.|+ .+|+...+.|.+++++..|+...+++.|++  +.++|++|+|++|.++.|..++++.+|++|+++....
T Consensus        27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~  102 (200)
T 3pge_A           27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI  102 (200)
T ss_dssp             CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCS
T ss_pred             CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence            345667776 488999999999999999999999999999  9999999999999999999999999999999988763

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.39  E-value=7.4e-07  Score=79.36  Aligned_cols=79  Identities=13%  Similarity=0.207  Sum_probs=74.1

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m  110 (333)
                      ...|+|.|..+|+.+.+.|.+++++..|+...+++.|+++.+++++|+|+.|. ++.|..++++.+|++|++.....++.
T Consensus        55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A           55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred             CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            56788888878999999999999999999999999999999999999999998 99999999999999999999887663

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.34  E-value=1.6e-06  Score=71.38  Aligned_cols=75  Identities=17%  Similarity=0.317  Sum_probs=68.5

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ...|+|.|+ .+|+.+.+.|.+++++..|+...+++.|+++.+++++|+|+.|. ++.|..++++.+|++|.+....
T Consensus        38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~-~~~TP~dL~MEDgD~IdV~~~Q  113 (115)
T 3kyd_D           38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQ  113 (115)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECC
T ss_pred             CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECC-CCCCHHHcCCCCCCEEEEEeec
Confidence            457888885 67888999999999999999999999999999999999999998 9999999999999999987653

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.18  E-value=3.8e-06  Score=74.83  Aligned_cols=77  Identities=12%  Similarity=0.189  Sum_probs=69.7

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      .+.+.|.|+ .+|+.+.+.|.+++++..|+...+++.|++  +.+++++|+|+.|.++.|..++++.+|++|+++.....
T Consensus        55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G  131 (207)
T 3tix_A           55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG  131 (207)
T ss_dssp             CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCC--GGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred             CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCC--cccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            344667775 488999999999999999999999999999  99999999999999999999999999999999887653

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.09  E-value=2.1e-06  Score=66.02  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=60.0

Q ss_pred             CcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCee-----cccCCccccccccccccceeee
Q 019968           32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-----LARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        32 ~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~-----L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      +.|.|.|+....++.+++++++|+.+|+.+|++.++++++.|.++++-.+     +. .+.+|+++||++|++|++.
T Consensus         3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~-~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITAS-SSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSC-CCCTTTTTCCCTTCCEEC-
T ss_pred             CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCC-CCCCHHHcCCCCCCEEEEe
Confidence            35888887666788899999999999999999999999999888765544     33 6789999999999999875

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.02  E-value=7.1e-07  Score=80.49  Aligned_cols=80  Identities=11%  Similarity=0.203  Sum_probs=0.9

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      ..+.|+|.|..+|+...+.|.+++++..|+...+++.|+++++++++|+|+.|. ++.|..++++.+|++|+++....++
T Consensus        18 p~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~-dddTPadL~MEDGDtIDV~leQ~GG   96 (227)
T 3v7o_A           18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG   96 (227)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CCCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecC-CCCCHHHcCCCCCCEEEEEecccCC
Confidence            466888888778899999999999999999999999999999999999999998 9999999999999999998877665


Q ss_pred             c
Q 019968          110 Q  110 (333)
Q Consensus       110 m  110 (333)
                      .
T Consensus        97 ~   97 (227)
T 3v7o_A           97 L   97 (227)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.01  E-value=2e-05  Score=62.50  Aligned_cols=66  Identities=21%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             eeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeec--CCCCcccccCC-CCCCEEEEEee
Q 019968          116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL--EDQRLITDICK-RNEAVIHLLVR  183 (333)
Q Consensus       116 t~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~L--eD~~tL~dy~I-~~gsvIhLv~r  183 (333)
                      ...+..+.+.+.+.+||..+|++|++++|+|  +.+|+|+|.|+.|  +.++.-..|-- ...+-|.|+.+
T Consensus        20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~   88 (94)
T 4efo_A           20 LQQMTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL   88 (94)
T ss_dssp             TTTTEEEEEEEETTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred             cccceEEEEEeccchHHHHHHHHHHHHhCCC--HHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence            3456788999999999999999999999999  9999999999876  55666666654 34455555443

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.96  E-value=2.8e-05  Score=61.74  Aligned_cols=50  Identities=16%  Similarity=0.267  Sum_probs=44.3

Q ss_pred             EEEEE-E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecc
Q 019968           34 ILIFL-S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELA   83 (333)
Q Consensus        34 M~I~V-t-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~   83 (333)
                      .-|+| . .++..+.+.+.+.+||..||.+|++++|||+.+|+|+|.|+.|.
T Consensus        13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~   64 (94)
T 4efo_A           13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV   64 (94)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred             eeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence            45566 3 46788999999999999999999999999999999999998765

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.91  E-value=7e-05  Score=57.29  Aligned_cols=70  Identities=9%  Similarity=0.123  Sum_probs=62.3

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCC-ceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~-~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      .+.++......+.+.|.++.+|..|-..-+.+.|++  ++ ..+|+|.|..|+.+.++.||.+.+|+.|.+++
T Consensus        11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~--~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKIS--FHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCC--CCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCC--cCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            345566556678999999999999999999999999  77 89999999999999999999999999999875

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.90  E-value=6.3e-06  Score=63.36  Aligned_cols=70  Identities=10%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCee---c--CCCCcccccCCCCCCEEEEE
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE---L--EDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~---L--eD~~tL~dy~I~~gsvIhLv  181 (333)
                      .|.|-|++.+| ++.+++++++|+.+|+.+|++..+++  ++.|.+.++...   |  .++.+|+++|++.|+.|++.
T Consensus         4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            47788888877 67788999999999999999999998  777777654433   3  47789999999999999873

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.88  E-value=0.00072  Score=65.19  Aligned_cols=142  Identities=15%  Similarity=0.149  Sum_probs=106.3

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhC----CCCcceEEEE------CCeecccCCccccccccccccceeee
Q 019968           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNG----FFVKKQKLVF------EGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        34 M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~g----ip~~~Q~Lif------~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      +.+.|.+.+.+.++.++|+.||.++-.+|.++..    .+.+..-|+.      .|+=|. ++++|..|++++|+.++..
T Consensus         4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~~   82 (371)
T 3ivf_A            4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEYR   82 (371)
T ss_dssp             EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeecc
Confidence            4455555588899999999999999999988764    3566777876      244487 7889999999999988776


Q ss_pred             eecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECC---------eecCCCCcccccCCCC
Q 019968          104 LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---------EELEDQRLITDICKRN  174 (333)
Q Consensus       104 ~rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~G---------k~LeD~~tL~dy~I~~  174 (333)
                      .+.   +.+.|..++|....+.|+++.|+.++=..|....|+. +.+.--|.+..         ..|+..+++.+.+...
T Consensus        83 ~~~---~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~  158 (371)
T 3ivf_A           83 KKQ---RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT-NHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEE  158 (371)
T ss_dssp             ECE---EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS-CGGGEEEECCC----------CCCTTSBTGGGTCCT
T ss_pred             Cce---eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CccccEEEEEecccccchHHHHHhcCchhHhhCCCC
Confidence            543   5688899999999999999999999999999999977 25555665532         2234455566555544


Q ss_pred             CCEEEE
Q 019968          175 EAVIHL  180 (333)
Q Consensus       175 gsvIhL  180 (333)
                      ...+++
T Consensus       159 ~~~l~f  164 (371)
T 3ivf_A          159 HETLLL  164 (371)
T ss_dssp             TCEEEE
T ss_pred             CceEEE
Confidence            444443

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=97.87  E-value=1.9e-06  Score=77.75  Aligned_cols=78  Identities=10%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             ecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          105 RLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       105 rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      .+.+.|.|.| +.+|+.+.+.|.+++.+..|+...+++.|++  +.++|++|+|+.+.++.|..++++++|++|+++...
T Consensus        17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ   93 (227)
T 3v7o_A           17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   93 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence            3455688888 7789999999999999999999999999999  999999999999999999999999999999998775


Q ss_pred             C
Q 019968          185 S  185 (333)
Q Consensus       185 ~  185 (333)
                      .
T Consensus        94 ~   94 (227)
T 3v7o_A           94 I   94 (227)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.73  E-value=0.00015  Score=55.45  Aligned_cols=70  Identities=20%  Similarity=0.265  Sum_probs=62.0

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-ceEEEECCeecccCCccccccccccccceeeee
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      +.+.++ .....+.+.|.++.||..|-..-+.+.|++++ ..+|.|.|..|. .+.++++|++.+|+.|.+++
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeeeee
Confidence            444554 34567899999999999999999999999999 999999999998 99999999999999998764

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.64  E-value=0.00059  Score=61.26  Aligned_cols=79  Identities=10%  Similarity=0.187  Sum_probs=69.8

Q ss_pred             ecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          105 RLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       105 rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      ...+.+.|.|++ +|+.+.+++.+++....|+...+++.|++  +.+++++|+|+.+.++.|..+....++++|++....
T Consensus        17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq   93 (209)
T 3uf8_A           17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   93 (209)
T ss_dssp             -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred             CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCC--hheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence            344556677766 77888999999999999999999999999  999999999999999999999999999999998775


Q ss_pred             CC
Q 019968          185 SA  186 (333)
Q Consensus       185 ~~  186 (333)
                      ..
T Consensus        94 ~G   95 (209)
T 3uf8_A           94 IG   95 (209)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.64  E-value=0.00036  Score=62.66  Aligned_cols=180  Identities=13%  Similarity=0.123  Sum_probs=116.5

Q ss_pred             CCCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           29 LSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        29 ~~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      .+.+.++|.|.-+|+...+.|..++++..|+...+++.|+++++++++|.|+.+. ++.+-.+..+.++++|.+.....+
T Consensus        17 ~~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~-~~~Tpk~L~~ed~d~I~~~~eq~G   95 (209)
T 3uf8_A           17 KPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIG   95 (209)
T ss_dssp             -CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC-TTCCTTTTTCCTTEEEEEECSCTT
T ss_pred             CCCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc-CCCChHHhhhcccccchhhccccc
Confidence            3467899999657888999999999999999999999999999999999999998 999999999999999999988877


Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC---
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS---  185 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~---  185 (333)
                      +.. ++.+.+|=.+.+-...+-..            .. .-+.-.+-|.|+. .|+..+.+ ....+..+.+.+...   
T Consensus        96 g~t-~~~~~sGl~~~vl~~G~G~~------------~~-~gd~V~v~Y~g~l-~dG~~fds-s~~~~~P~~f~lG~g~vi  159 (209)
T 3uf8_A           96 GST-VVTTESGLKYEDLTEGSGAE------------AR-AGQTVSVHYTGWL-TDGQKFDS-SKDRNDPFAFVLGGGMVI  159 (209)
T ss_dssp             CCC-CEECTTSCEEEEEECCCSCB------------CC-TTCEEEEEEEEEE-TTSCEEEE-SGGGTCCEEEETTSSSSC
T ss_pred             ccc-ccCCCCceEEEEEEcCCCCc------------CC-CCCEEEEEEEEEE-CCCCEEEE-ccccCCCEEEEeCCCccc
Confidence            653 33355553333222221100            01 0122344477764 45544433 222333444443321   


Q ss_pred             ----CccccccCCceEEEEEeeccccc-cCCCC-CCCCceEEEeece
Q 019968          186 ----AKVRAKPVQKDFEVSIEATELNE-KGADV-VGEHQFETLFMGY  226 (333)
Q Consensus       186 ----~~v~t~~~gk~~~l~v~~~d~~~-~~~~g-i~~~~q~Lif~Gk  226 (333)
                          ..+.....|...++.+.+...=. .+..+ ||+. .-|+|.=+
T Consensus       160 ~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~~~~IP~~-s~LvF~Ve  205 (209)
T 3uf8_A          160 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPN-ATLVFEVE  205 (209)
T ss_dssp             HHHHHHHTTCBTTCEEEEEECGGGTTTTTCBTTTBCTT-CCEEEEEE
T ss_pred             hhHHHHHhCCCCCCEEEEEECcHHhCCCCCCCCCcCCC-CeEEEEEE
Confidence                12445556888999776544422 22222 4443 45666533

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.49  E-value=0.00055  Score=54.52  Aligned_cols=72  Identities=13%  Similarity=0.146  Sum_probs=64.3

Q ss_pred             cccceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       108 d~m~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      ..+.|.|+..+|+ .+.+.|.++++...|...-+++.|++  +..-+++|+|..|..+.|..++++.+|++|.+.
T Consensus        24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS--GRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS--SSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            4456667777784 78999999999999999999999998  899999999999999999999999999999874

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.43  E-value=2e-05  Score=76.43  Aligned_cols=82  Identities=11%  Similarity=0.187  Sum_probs=2.3

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m  110 (333)
                      ...++|.|+-+|+...+.|..++++..|+...+++.|++++++++.|+|+.|. ++.|.+++++.+|++|.+.....++|
T Consensus        19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~-~~~TP~~L~MEDgD~Idv~~~Q~g~~   97 (360)
T 3ix6_A           19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGGM   97 (360)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC-CCCChHHcCCCccchhhhhhccCchH
Confidence            45788888557888999999999999999999999999999999999999998 99999999999999999999988776


Q ss_pred             cee
Q 019968          111 AIT  113 (333)
Q Consensus       111 ~I~  113 (333)
                      +.+
T Consensus        98 ~~Y  100 (360)
T 3ix6_A           98 RTY  100 (360)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.40  E-value=0.00071  Score=53.85  Aligned_cols=73  Identities=11%  Similarity=0.292  Sum_probs=65.5

Q ss_pred             CCCcEEEEEE-eCC-eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968           30 SNDSILIFLS-VGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G-~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      ..+.++|.|. .+| ..+.+.|.+++++..|...-+++.|+++..-+++|+|..|. .+.|..++++.+|++|.+.
T Consensus        22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~-~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS-GRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC-SCSCHHHHTCCTTEEEEEE
T ss_pred             CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence            3567888885 567 48999999999999999999999999999999999999998 8999999999999998764

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.26  E-value=0.0019  Score=51.13  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=69.0

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      ..+.++|.|+-.|....+.|..++....|...-+.+.|++++.-++.|+|..+. ++.|-.+.++.+|++|.+.+-
T Consensus        18 ~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~-~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           18 TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS-PTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC-TTSCHHHHTCCSSCEEEEEEC
T ss_pred             CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC-CCCCHhHcCCCCCCEEEEEEe
Confidence            355688888878899999999999999999999999999999999999999998 999999999999999988753

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.23  E-value=0.001  Score=52.28  Aligned_cols=76  Identities=12%  Similarity=0.013  Sum_probs=68.3

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      ..+|.+.|-..+|+..++.|.|+.++.++-+.-.+++|+.  +++..|.|+++.|+-.-.++-.|+.+|+.+.|+...
T Consensus         7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s   82 (90)
T 2al3_A            7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS   82 (90)
T ss_dssp             ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred             CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--hhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence            3568899988999999999999999999999999999998  899999999999988999999999999999998664

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.19  E-value=0.00044  Score=57.78  Aligned_cols=70  Identities=14%  Similarity=0.128  Sum_probs=57.1

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCC-----------------------------------ceEEE
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK-----------------------------------NQELI  155 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~-----------------------------------~QrLi  155 (333)
                      .+.|++++|...++.|+.+.+|.+++..|+.+.|++.+.+                                   .|+|-
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            4788999999999999999999999999999999883211                                   34442


Q ss_pred             E--CCeecCCCCcccccCCCCCCEEEE
Q 019968          156 C--DGEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       156 f--~Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      .  .+..|+++++|.++||.+++++-|
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllL  119 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLL  119 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence            2  236678899999999999999665

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.10  E-value=0.00064  Score=53.37  Aligned_cols=75  Identities=16%  Similarity=0.102  Sum_probs=66.5

Q ss_pred             CCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        31 ~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ...|.|.| ..+++...+.|.|+.|+.++-...++++|+.+++..|.|+++.|+ -...+.-.|+.+|+.+.|+...
T Consensus         7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD-LSlpfRlsgLpnnAkLELv~~s   82 (90)
T 2al3_A            7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPVS   82 (90)
T ss_dssp             ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECSS
T ss_pred             CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc-ccceeEecCCCCCCEEEEEEcc
Confidence            44677888 478899999999999999999999999999999999999999997 8899999999999999998654

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.09  E-value=7.8e-05  Score=72.31  Aligned_cols=78  Identities=10%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             ecccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          105 RLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       105 rlsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      .+...+.|.|++ .|+...+.|.++++...|+...+++.|++  +++++++|+|+.+.++.|.+++++++|++|+++...
T Consensus        17 ~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q   93 (360)
T 3ix6_A           17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   93 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCC--cceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence            344556777776 67889999999999999999999999999  999999999999999999999999999999999875


Q ss_pred             C
Q 019968          185 S  185 (333)
Q Consensus       185 ~  185 (333)
                      .
T Consensus        94 ~   94 (360)
T 3ix6_A           94 I   94 (360)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.01  E-value=0.0001  Score=71.85  Aligned_cols=83  Identities=11%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccccc
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~m  110 (333)
                      ...+.|.|.-+|....+.|..+++...|+...+++.|+++.++++.|+|+.|. ++.|-.++++.+|++|.+.....++.
T Consensus        28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~-~~~Tp~~l~med~d~i~~~~~q~gg~  106 (389)
T 4da1_A           28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQAPEDLDMEDNDIIEAHREQIGGE  106 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEeeeeecccccc
Confidence            45667777447788899999999999999999999999999999999999998 99999999999999999998876654


Q ss_pred             ceeE
Q 019968          111 AITV  114 (333)
Q Consensus       111 ~I~V  114 (333)
                      ..++
T Consensus       107 n~~~  110 (389)
T 4da1_A          107 NLYF  110 (389)
T ss_dssp             ----
T ss_pred             ccce
Confidence            4443

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=96.91  E-value=0.0048  Score=48.84  Aligned_cols=73  Identities=11%  Similarity=0.052  Sum_probs=65.7

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +.|-|+ ..|....+.+..++....|..--+++.|+.  +..-+++|+|..+.++.|-.+.+++++++|..++.++
T Consensus        22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~~   94 (95)
T 2l76_A           22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVS--PSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTS   94 (95)
T ss_dssp             EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSC--GGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECCC
T ss_pred             EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEecC
Confidence            556666 368899999999999999999999999999  9999999999999999999999999999999877543

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=96.82  E-value=0.0028  Score=48.83  Aligned_cols=70  Identities=17%  Similarity=0.288  Sum_probs=58.0

Q ss_pred             CcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-----ceEEEECCeecccCCccccccccccccceee
Q 019968           32 DSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVK-----KQKLVFEGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        32 ~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-----~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      ..++|++.+   .++.+.+++....||..|+..+.+..+++..     ..++.-.|..|. ++..|++|+|.+|+.+.+
T Consensus         3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~-~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS-GECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE-TTSBTGGGTCCTTCEEEE
T ss_pred             cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc-CCCEEeeCCcCCCCEEEE
Confidence            456666654   7899999999999999999999999888642     334556788898 999999999999998764

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=96.73  E-value=0.0014  Score=54.74  Aligned_cols=70  Identities=23%  Similarity=0.277  Sum_probs=56.6

Q ss_pred             EEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCc-------------------------------------ceEEE
Q 019968           35 LIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-------------------------------------KQKLV   76 (333)
Q Consensus        35 ~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~-------------------------------------~Q~Li   76 (333)
                      .+.|+ ++|...++.|+.+.||.+++..|+.+.|++..                                     +|+|.
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            56775 78999999999999999999999999999854                                     34442


Q ss_pred             E--CCeecccCCccccccccccccceeeeee
Q 019968           77 F--EGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        77 f--~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      .  .+.-|+ ++++|.++||.++++|.|.-+
T Consensus        93 ~dd~~~WLD-~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLD-HGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEEC-SSSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCccc-CCCcHHHcCCCCCCEEEEEEE
Confidence            2  124465 899999999999999877654

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=96.48  E-value=0.00044  Score=67.35  Aligned_cols=75  Identities=11%  Similarity=0.193  Sum_probs=0.0

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +.+.|.|++ +|+...+.|.++++...|+...+++.|++  +.++++.|+|+.+.++.|..++++.+|++|+++....
T Consensus        29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~  103 (389)
T 4da1_A           29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQI  103 (389)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccc
Confidence            345566666 67788899999999999999999999999  9999999999999999999999999999999987653

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=96.30  E-value=0.012  Score=45.24  Aligned_cols=64  Identities=11%  Similarity=0.093  Sum_probs=53.6

Q ss_pred             eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCC---ceEEEECCeecCCCCcccccCCCCCCEEEE
Q 019968          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK---NQELICDGEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~---~QrLif~Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      -.++.+-+++....||..|+..+.+..+++.+..   +-|+.-.|..|.++++|+||+|.+|+.|.+
T Consensus        14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A           14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            3688999999999999999999999998763222   345556778889999999999999999875

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.19  E-value=0.017  Score=44.01  Aligned_cols=69  Identities=10%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~L---eD~~tL~dy~I~~gsvIhLv  181 (333)
                      ..|.||..+|+.+.-....++||.+|..-|.. .+.+  .....|+  |-.+.+   +.+.||.+.|+.++++|.+-
T Consensus         8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            45778889998888889999999999999988 5555  7788888  567888   34789999999999998874

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=95.94  E-value=0.042  Score=41.79  Aligned_cols=73  Identities=21%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc--cCCccccccccccccceeeee
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~--~D~~tL~dygI~~gstV~Lv~  104 (333)
                      ....+|-|+ .+|+.+.-....++||.+|..-|.. .+.+.....|+  |-.+.|.  +.+.+|.+.|+.++++|.+..
T Consensus         5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            446778887 5788888899999999999999998 57777788887  5567784  467899999999999988754

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=95.73  E-value=0.067  Score=42.98  Aligned_cols=76  Identities=17%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc--cCCccccccccccccceeeee
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~--~D~~tL~dygI~~gstV~Lv~  104 (333)
                      .....+|-|+ .+|..+.-....++||.+|..-|....+.+.....|+  |-.+.+.  +.+.+|.+.|+.+.++|++..
T Consensus        10 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~   89 (109)
T 2dzk_A           10 RSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP   89 (109)
T ss_dssp             CSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence            3556888887 5889999999999999999999999988776777776  4567776  357899999999999988776


Q ss_pred             e
Q 019968          105 R  105 (333)
Q Consensus       105 r  105 (333)
                      .
T Consensus        90 ~   90 (109)
T 2dzk_A           90 A   90 (109)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=95.47  E-value=0.11  Score=42.64  Aligned_cols=73  Identities=16%  Similarity=0.265  Sum_probs=60.6

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeec--ccCCccccccccccccceeeee
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGREL--ARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L--~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      ....+|-|+ .+|..+.-....++||.+|..-|... +.+.....|+  |-.+.|  .+.+.+|.+.|+.+.++|++..
T Consensus        41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~  118 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence            556888887 57889999999999999999999887 7777777887  567888  4357999999999988887754

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=95.37  E-value=0.06  Score=44.34  Aligned_cols=71  Identities=10%  Similarity=0.042  Sum_probs=59.6

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeec--CC-CCcccccCCCCCCEEEEE
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL--ED-QRLITDICKRNEAVIHLL  181 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~L--eD-~~tL~dy~I~~gsvIhLv  181 (333)
                      +...|.||..+|+.+.-....++||.+|..-|... +.+  .....|+  |-.+.|  +| +.||.+.++.+.++|++.
T Consensus        42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            45778899999999999999999999999999887 665  6777787  568888  34 789999999998888874

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.19  E-value=0.082  Score=42.91  Aligned_cols=65  Identities=15%  Similarity=0.092  Sum_probs=46.7

Q ss_pred             CcEEEEEEecCCchHHHHHHHHHh--cCCCC----CCCceEEEE----CCeecCCC-------------CcccccCCCCC
Q 019968          119 GKVFEFHVERGRNVGYVKQQIAKK--GREFV----DLKNQELIC----DGEELEDQ-------------RLITDICKRNE  175 (333)
Q Consensus       119 Gk~~~l~V~~sdTV~~LK~~I~~~--~Gip~----~~~~QrLif----~Gk~LeD~-------------~tL~dy~I~~g  175 (333)
                      +..+++.|-..|||..+|++|-+.  .|.|.    .++...|-+    .|+.|.|.             +||+.|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            456889999999999999999885  35552    245666776    35666441             57899999999


Q ss_pred             CEEEEEee
Q 019968          176 AVIHLLVR  183 (333)
Q Consensus       176 svIhLv~r  183 (333)
                      +++-|+-+
T Consensus       103 atl~l~~~  110 (111)
T 4e71_A          103 ATLILSKV  110 (111)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEeC
Confidence            99988643

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=94.86  E-value=0.14  Score=49.03  Aligned_cols=87  Identities=15%  Similarity=0.077  Sum_probs=66.7

Q ss_pred             CcEEEEEEecCCchHHHHHHHHHhcCC--CCCCCceEEEE------CCeecCCCCcccccCCCCCCEEEEEeec-CCccc
Q 019968          119 GKVFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELIC------DGEELEDQRLITDICKRNEAVIHLLVRK-SAKVR  189 (333)
Q Consensus       119 Gk~~~l~V~~sdTV~~LK~~I~~~~Gi--p~~~~~QrLif------~Gk~LeD~~tL~dy~I~~gsvIhLv~r~-~~~v~  189 (333)
                      +-+.++.++++.||.++-.+|.++..-  +.+.++.-|..      .|+-|++.++|..|++++|+.|+..-+. ..+|+
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~   91 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIR   91 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEE
Confidence            667899999999999999999998642  22377888887      5677999999999999999999885442 23454


Q ss_pred             cccCCceEEEEEeeccc
Q 019968          190 AKPVQKDFEVSIEATEL  206 (333)
Q Consensus       190 t~~~gk~~~l~v~~~d~  206 (333)
                      ... |...++.++++.+
T Consensus        92 l~d-g~~~~~~vd~~tt  107 (371)
T 3ivf_A           92 MLD-GTVKTIMVDDSKT  107 (371)
T ss_dssp             CTT-SCEEEEEEETTSB
T ss_pred             CcC-CCEEEEEECCCCC
Confidence            444 6677777776655

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=94.82  E-value=0.09  Score=42.19  Aligned_cols=73  Identities=19%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC--C-CCcccccCCCCCCEEEEEee
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE--D-QRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le--D-~~tL~dy~I~~gsvIhLv~r  183 (333)
                      ...|.||..+|+.+.-....++||.+|..-|....+.+  .....|+  |-.+.+.  | +.||.+.|+.+.++|++...
T Consensus        13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT--YGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            35678899999988999999999999999999987655  5666776  5677785  3 78999999999988888654

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=94.73  E-value=0.082  Score=44.42  Aligned_cols=77  Identities=18%  Similarity=0.358  Sum_probs=53.7

Q ss_pred             CCcEEEEEE-eC------CeEEEEEecCCCCHHHHHHHHHHh--hCCCCc------ceEEEE----CCee-cccCC----
Q 019968           31 NDSILIFLS-VG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF----EGRE-LARSN----   86 (333)
Q Consensus        31 ~~~M~I~Vt-~~------G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~------~Q~Lif----~G~~-L~~D~----   86 (333)
                      ..+|.|+|. ..      ...+++.|...|||.++|.||-..  .|+|.+      ..-|-+    .|+. |. |.    
T Consensus        22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~-D~D~tS  100 (138)
T 2r2o_A           22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILS-DEDVTS  100 (138)
T ss_dssp             CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEEC-SSSTTC
T ss_pred             eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEee-ccCCcc
Confidence            557888883 21      256899999999999999999885  556543      233443    2433 55 32    


Q ss_pred             ---------ccccccccccccceeeeeeccc
Q 019968           87 ---------SRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        87 ---------~tL~dygI~~gstV~Lv~rlsd  108 (333)
                               .||+.|+|.+|+++-|+.+.+.
T Consensus       101 ~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~~  131 (138)
T 2r2o_A          101 EVQGLWRRLNTLQHYKVPDGATVALVPCLTK  131 (138)
T ss_dssp             CEETTEEECCBHHHHTCCTTCEEEEEEC---
T ss_pred             cccCCceeecchhccCCCCCCEEEEEECCCc
Confidence                     2899999999999999887654

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=94.16  E-value=0.15  Score=41.28  Aligned_cols=75  Identities=24%  Similarity=0.354  Sum_probs=51.1

Q ss_pred             CCcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHh--hCCCCc------ceEEEE----CCeecccCC---------
Q 019968           31 NDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF----EGRELARSN---------   86 (333)
Q Consensus        31 ~~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~------~Q~Lif----~G~~L~~D~---------   86 (333)
                      ..+|.++|..   .+..+++.|...|||.++|.||-..  .|+|.+      ...|-+    .|+.|.+.+         
T Consensus         9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w   88 (111)
T 4e71_A            9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW   88 (111)
T ss_dssp             CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred             eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence            4577788742   3466889999999999999999875  455544      444654    245565211         


Q ss_pred             ---ccccccccccccceeeeee
Q 019968           87 ---SRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        87 ---~tL~dygI~~gstV~Lv~r  105 (333)
                         .||+.|+|.+|+++-|+.+
T Consensus        89 krLNTL~HY~V~dgatl~l~~~  110 (111)
T 4e71_A           89 KRVNTLMHYNVRDGATLILSKV  110 (111)
T ss_dssp             CCCCBHHHHTCCTTCEEEEEEC
T ss_pred             eEecchhhcCCCCCCEEEEEeC
Confidence               3789999999999988654

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=93.98  E-value=0.23  Score=39.71  Aligned_cols=80  Identities=20%  Similarity=0.316  Sum_probs=61.5

Q ss_pred             CCCCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc-cCCccccccccccccce
Q 019968           25 RPEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA-RSNSRVRDYGLADGNVL  100 (333)
Q Consensus        25 ~~~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~-~D~~tL~dygI~~gstV  100 (333)
                      +|........+|-|+ .+|+.+.-....++||.+|..-|... +.......|+  |-.+.|. +.+.||.+.|+.+.++|
T Consensus        15 EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L   93 (109)
T 2cr5_A           15 EPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVL   93 (109)
T ss_dssp             CCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEE
T ss_pred             CCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEE
Confidence            333333457888887 57888889999999999999999965 5555667776  5577786 35789999999999998


Q ss_pred             eeeee
Q 019968          101 HLVLR  105 (333)
Q Consensus       101 ~Lv~r  105 (333)
                      .+..+
T Consensus        94 ~Ve~~   98 (109)
T 2cr5_A           94 NVEEK   98 (109)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            77543

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=93.96  E-value=0.31  Score=40.32  Aligned_cols=67  Identities=10%  Similarity=0.034  Sum_probs=50.1

Q ss_pred             CCcEEEEEEecCCchHHHHHHHHHh--cCCCC----CCCceEEEE----CCee-cCCC-------------CcccccCCC
Q 019968          118 CGKVFEFHVERGRNVGYVKQQIAKK--GREFV----DLKNQELIC----DGEE-LEDQ-------------RLITDICKR  173 (333)
Q Consensus       118 ~Gk~~~l~V~~sdTV~~LK~~I~~~--~Gip~----~~~~QrLif----~Gk~-LeD~-------------~tL~dy~I~  173 (333)
                      ++..+++.|-..|||.++|++|-+.  .+.|.    .+++..|.+    .|+. |.|.             +||+.|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            3456889999999999999999885  35553    246777876    3443 5431             578999999


Q ss_pred             CCCEEEEEeec
Q 019968          174 NEAVIHLLVRK  184 (333)
Q Consensus       174 ~gsvIhLv~r~  184 (333)
                      +|+++-|+.+.
T Consensus        95 dgatv~l~~~~  105 (127)
T 3h6n_A           95 EGASLAMSLID  105 (127)
T ss_dssp             TTCEEEEEECC
T ss_pred             CCCEEEEEEcc
Confidence            99999997654

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=93.88  E-value=0.22  Score=40.69  Aligned_cols=66  Identities=14%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             CcEEEEEEecCCchHHHHHHHHHh--cCCCC----CCCceEEEE-CC---ee-cCC--C-----------CcccccCCCC
Q 019968          119 GKVFEFHVERGRNVGYVKQQIAKK--GREFV----DLKNQELIC-DG---EE-LED--Q-----------RLITDICKRN  174 (333)
Q Consensus       119 Gk~~~l~V~~sdTV~~LK~~I~~~--~Gip~----~~~~QrLif-~G---k~-LeD--~-----------~tL~dy~I~~  174 (333)
                      ...+++.|-..|||..+|++|-+.  .|.|.    .+++..|.+ .|   +. |.|  .           +||+.|+|.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            345888999999999999999885  35553    245667776 33   32 433  1           5789999999


Q ss_pred             CCEEEEEeec
Q 019968          175 EAVIHLLVRK  184 (333)
Q Consensus       175 gsvIhLv~r~  184 (333)
                      |+++-|+-+.
T Consensus       106 gatl~l~~~~  115 (117)
T 4e74_A          106 GSVVALVSKQ  115 (117)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999997764

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=93.80  E-value=0.4  Score=43.28  Aligned_cols=66  Identities=20%  Similarity=0.288  Sum_probs=54.2

Q ss_pred             EEEEEecCCCCHHHHHHHHHHhhCCCCc-ceEEEE-C----CeecccCCccccccccccccceeeeeecccc
Q 019968           44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~-~Q~Lif-~----G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      .+++.++..+||.+|+.++...++++.+ .-||.. .    ...|.+.+.+|.++++.+|..|.+-++..|+
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg  224 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG  224 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            3567789999999999999999999987 577753 3    2457645799999999999999988886654

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=93.60  E-value=0.36  Score=40.53  Aligned_cols=66  Identities=12%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             cEEEEEEecCCchHHHHHHHHHhc--CCCC----CCCceEEEE----CCee-cCCC-------------CcccccCCCCC
Q 019968          120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEE-LEDQ-------------RLITDICKRNE  175 (333)
Q Consensus       120 k~~~l~V~~sdTV~~LK~~I~~~~--Gip~----~~~~QrLif----~Gk~-LeD~-------------~tL~dy~I~~g  175 (333)
                      ..+++.|-..|||.++|+||-+..  |.|.    .+++.-|.+    +|+. |.|.             +||+.|+|.+|
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg  120 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  120 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence            568899999999999999998863  5552    234456665    3443 5442             48999999999


Q ss_pred             CEEEEEeecC
Q 019968          176 AVIHLLVRKS  185 (333)
Q Consensus       176 svIhLv~r~~  185 (333)
                      +++-|+-+.+
T Consensus       121 a~l~l~~~~~  130 (138)
T 2r2o_A          121 ATVALVPCLT  130 (138)
T ss_dssp             CEEEEEEC--
T ss_pred             CEEEEEECCC
Confidence            9999987754

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=93.36  E-value=0.29  Score=43.76  Aligned_cols=66  Identities=23%  Similarity=0.369  Sum_probs=53.4

Q ss_pred             EEEEEecCCCCHHHHHHHHHHhhCCCCc-ceEEE--E-CC--eecccCCccccccccccccceeeeeecccc
Q 019968           44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLV--F-EG--RELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~-~Q~Li--f-~G--~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      .+++.++..+||.+|+.++...++++.+ .-||.  + .+  ..|.+.+.+|.++++.+|..|.+-++..|+
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg  212 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG  212 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            3668889999999999999999999987 57774  3 22  356645689999999999999888876654

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=93.36  E-value=0.25  Score=39.48  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=57.2

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeecC--CCCcccccCCCCCCEEEEEe
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE--DQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~Le--D~~tL~dy~I~~gsvIhLv~  182 (333)
                      ...|.||..+|+.+.-+...++||.+|..-|... +..  +....|+  |-.+.|.  .+.||.+.|+.+.++|++..
T Consensus        23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~--~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYH--KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCC--TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            4567888889988888889999999999999865 334  5667776  5678885  47899999999998887744

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=92.57  E-value=0.75  Score=38.05  Aligned_cols=75  Identities=19%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             CcEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHh--hCCCC------cceEEEE-C---Cee-cccCC---------
Q 019968           32 DSILIFLS---VGGSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-E---GRE-LARSN---------   86 (333)
Q Consensus        32 ~~M~I~Vt---~~G~~~~i~V~~sdTV~~LK~kI~~~--~gip~------~~Q~Lif-~---G~~-L~~D~---------   86 (333)
                      .++.+++-   .++..+++.|...|||.++|.||-..  .|+|.      +...|-+ .   |+. |.+.+         
T Consensus         3 ~~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~   82 (127)
T 3h6n_A            3 KPRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGR   82 (127)
T ss_dssp             CEEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTE
T ss_pred             eEEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCce
Confidence            35566663   23456889999999999999999875  45554      4555654 2   332 55211         


Q ss_pred             ---ccccccccccccceeeeeec
Q 019968           87 ---SRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        87 ---~tL~dygI~~gstV~Lv~rl  106 (333)
                         .||+.|+|.+|+++-|..+.
T Consensus        83 krLNTL~HY~V~dgatv~l~~~~  105 (127)
T 3h6n_A           83 KKLNTLAHYKIPEGASLAMSLID  105 (127)
T ss_dssp             ECCCBTTTTTCCTTCEEEEEECC
T ss_pred             eEeccccccCCCCCCEEEEEEcc
Confidence               38999999999999887664

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=92.55  E-value=0.29  Score=40.23  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=55.4

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhc-CCCCCCCceEEE--ECCeecCC-CCcccccCCCCCCEEE
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKG-REFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH  179 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~-Gip~~~~~QrLi--f~Gk~LeD-~~tL~dy~I~~gsvIh  179 (333)
                      ...|.||..+|+.+.-....++||.+|..-|.... +..  .....|+  |-.+.++| +.||.+.|+.+..++.
T Consensus        52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~  124 (127)
T 1s3s_G           52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ  124 (127)
T ss_dssp             CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--TSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--CCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence            46788899999999999999999999999999863 344  4666776  56888865 7899999998755443

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=91.41  E-value=0.83  Score=46.22  Aligned_cols=135  Identities=8%  Similarity=0.053  Sum_probs=89.2

Q ss_pred             EEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC-e------e-ccc----CCcccccccc-ccccceeeeeec-----
Q 019968           45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-R------E-LAR----SNSRVRDYGL-ADGNVLHLVLRL-----  106 (333)
Q Consensus        45 ~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G-~------~-L~~----D~~tL~dygI-~~gstV~Lv~rl-----  106 (333)
                      ..+.|..++|+.+||..|++..|+|+++|||-.-- +      + +.+    ...++.++.- .+...|.|-+..     
T Consensus        38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~  117 (530)
T 2ylm_A           38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAA  117 (530)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHT
T ss_pred             ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccCC
Confidence            35789999999999999999999999999985321 1      1 110    1112222211 111233332210     


Q ss_pred             ----------ccccceeEeeeCC--cEEE----EEEecCCchHHHHHHHHHhcCCCCCCCceEEEEC------CeecC-C
Q 019968          107 ----------SDLQAITVTTVCG--KVFE----FHVERGRNVGYVKQQIAKKGREFVDLKNQELICD------GEELE-D  163 (333)
Q Consensus       107 ----------sd~m~I~Vkt~~G--k~~~----l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~------Gk~Le-D  163 (333)
                                .+.+.||+|-.+-  ++..    +.|..+++|.++-..|.+..|+|  ++.--.+|.      -..|+ .
T Consensus       118 ~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p--~dt~l~lyEEi~~~~ie~l~~~  195 (530)
T 2ylm_A          118 SGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFI--QDTSLILYEEVKPNLTERIQDY  195 (530)
T ss_dssp             TTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCC--TTCCEEEEEEEETTEEEECCCS
T ss_pred             ccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCC--CCCceEEEEecCCCceeEcccc
Confidence                      1135677766432  2332    66889999999999999999999  766666663      34566 5


Q ss_pred             CCccccc--CCCCCCEEEEE
Q 019968          164 QRLITDI--CKRNEAVIHLL  181 (333)
Q Consensus       164 ~~tL~dy--~I~~gsvIhLv  181 (333)
                      ..|+.+.  .+.+|++|-.=
T Consensus       196 ~~t~~~~~~eL~~GdII~fQ  215 (530)
T 2ylm_A          196 DVSLDKALDELMDGDIIVFQ  215 (530)
T ss_dssp             SSBHHHHSTTCCTTEEEEEE
T ss_pred             cccHHHHHhcccCCCEEEEE
Confidence            7899999  99999987654

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=91.13  E-value=0.63  Score=37.99  Aligned_cols=76  Identities=21%  Similarity=0.417  Sum_probs=53.0

Q ss_pred             CCcEEEEEEe----CCeEEEEEecCCCCHHHHHHHHHHh--hCCCCc------ceEEEE-CC---e-ecccCC-------
Q 019968           31 NDSILIFLSV----GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF-EG---R-ELARSN-------   86 (333)
Q Consensus        31 ~~~M~I~Vt~----~G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~------~Q~Lif-~G---~-~L~~D~-------   86 (333)
                      ..+|.++|-.    ....+++.|...|||.++|.||-..  .|+|.+      ...|-+ .|   + .|.+.+       
T Consensus        11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~   90 (117)
T 4e74_A           11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN   90 (117)
T ss_dssp             CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred             cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence            4577777732    2345889999999999999999874  466544      445554 33   3 254211       


Q ss_pred             -----ccccccccccccceeeeeec
Q 019968           87 -----SRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        87 -----~tL~dygI~~gstV~Lv~rl  106 (333)
                           .||+.|+|.+|+++-|+.+.
T Consensus        91 ~wkrLNTL~HY~V~dgatl~l~~~~  115 (117)
T 4e74_A           91 DWKRLNTLAHYQVPDGSVVALVSKQ  115 (117)
T ss_dssp             -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred             cceEeccccccCCCCCCEEEEEeCC
Confidence                 37899999999999988764

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=90.75  E-value=1.1  Score=36.98  Aligned_cols=62  Identities=21%  Similarity=0.209  Sum_probs=44.0

Q ss_pred             cEEEEEEecCCchHHHHHHHHHh----cCCCCC--CCceEEEE-CC---eecCC----------C----CcccccCCCCC
Q 019968          120 KVFEFHVERGRNVGYVKQQIAKK----GREFVD--LKNQELIC-DG---EELED----------Q----RLITDICKRNE  175 (333)
Q Consensus       120 k~~~l~V~~sdTV~~LK~~I~~~----~Gip~~--~~~QrLif-~G---k~LeD----------~----~tL~dy~I~~g  175 (333)
                      ..+++.|-..|||.++|++|-+.    .|.|..  +++..|.+ .|   ..|.|          +    +||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            46889999999999999998764    376632  34556655 22   23322          1    46889999999


Q ss_pred             CEEEEE
Q 019968          176 AVIHLL  181 (333)
Q Consensus       176 svIhLv  181 (333)
                      +++-|+
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            999875

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=90.51  E-value=0.79  Score=35.17  Aligned_cols=48  Identities=8%  Similarity=0.064  Sum_probs=42.3

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECC
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG   79 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G   79 (333)
                      ...|.|.|.+. -++.|.|.++.+..+|..+|.++.+++++.-.|.|..
T Consensus         3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            44588888776 7999999999999999999999999999888998854

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=89.97  E-value=2.5  Score=30.63  Aligned_cols=64  Identities=8%  Similarity=0.114  Sum_probs=48.1

Q ss_pred             cEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      .|+|+|.-......+++..+.|+.+|...+    ++++..-.+..+|..+.+| .     -+++|+.|.++...
T Consensus         4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~~V   67 (70)
T 1ryj_A            4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIRVI   67 (70)
T ss_dssp             CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEECT
T ss_pred             eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEecc
Confidence            588888766666778888889999998875    5666666677889988733 2     67889988776543

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=89.87  E-value=0.4  Score=39.44  Aligned_cols=70  Identities=19%  Similarity=0.298  Sum_probs=55.3

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhh-CCCCcceEEE--ECCeecccCCccccccccccccce
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYN-GFFVKKQKLV--FEGRELARSNSRVRDYGLADGNVL  100 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~-gip~~~Q~Li--f~G~~L~~D~~tL~dygI~~gstV  100 (333)
                      ....+|-|+ .+|..+.-.+..++||.+|..-|.... +.......|+  |-.+.|.+++.+|.+.|+.+.+++
T Consensus        50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            446778886 578899999999999999999999863 3445566776  557889866899999999886554

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=89.85  E-value=1.9  Score=43.51  Aligned_cols=115  Identities=10%  Similarity=0.018  Sum_probs=74.8

Q ss_pred             CCcEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCC---CcceEEE--ECCe---ecccCCccccccccccccc
Q 019968           31 NDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLV--FEGR---ELARSNSRVRDYGLADGNV   99 (333)
Q Consensus        31 ~~~M~I~Vt~---~G~~~~i~V~~sdTV~~LK~kI~~~~gip---~~~Q~Li--f~G~---~L~~D~~tL~dygI~~gst   99 (333)
                      ...|+|+...   .-..+.+.+..+.||++|-..++++.+++   ..+.+|+  ++++   .+. ++.++...+=.....
T Consensus       337 ~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~~i~d~~~~~  415 (530)
T 2ylm_A          337 RRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLECLSPATSRT  415 (530)
T ss_dssp             BCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGGGSCCCTTCE
T ss_pred             CceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccccccccccce
Confidence            4567776632   22367788899999999999999999987   4566663  6775   354 555554432111223


Q ss_pred             eeeeeecc--------cccceeEee-------eCCcEEEEEEecCCchHHHHHHHHHhcCCC
Q 019968          100 LHLVLRLS--------DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF  146 (333)
Q Consensus       100 V~Lv~rls--------d~m~I~Vkt-------~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip  146 (333)
                      +.+-.-+.        +.+.|.|--       ..|..|.+.|.+..|..++|+||+++.|++
T Consensus       416 ~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~  477 (530)
T 2ylm_A          416 FRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQ  477 (530)
T ss_dssp             EEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCC
T ss_pred             EEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCC
Confidence            32221111        112233311       357789999999999999999999999986

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.90  E-value=1  Score=34.84  Aligned_cols=63  Identities=13%  Similarity=0.031  Sum_probs=52.5

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE---CCeecCCCCcccccCCCC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRN  174 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif---~Gk~LeD~~tL~dy~I~~  174 (333)
                      ..+.|+-...+.+.++|.|.-+..++--.|.++..+.  +..-.|.-   .+.+|+-+.+|.|||+++
T Consensus        11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefd--p~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A           11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFD--PLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCC--TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCC--hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            3455555566778899999999999999999999987  88877774   667888899999999985

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.14  E-value=2.2  Score=32.92  Aligned_cols=66  Identities=17%  Similarity=0.167  Sum_probs=55.8

Q ss_pred             CCCcEEEEEEeCC-eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE---CCeecccCCcccccccccc
Q 019968           30 SNDSILIFLSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLAD   96 (333)
Q Consensus        30 ~~~~M~I~Vt~~G-~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif---~G~~L~~D~~tL~dygI~~   96 (333)
                      +..++++.|.+.. ...-+.|+|..++.+|--.|+++-.+.+..-.|.-   .+..|+ -+.+|.+|||++
T Consensus         7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld-LskSLndlgirE   76 (91)
T 2daj_A            7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD-LTKSLNDLGLRE   76 (91)
T ss_dssp             CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC-TTSCHHHHTCSE
T ss_pred             CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc-hhcchhhhhhhh
Confidence            4678999997544 55668999999999999999999999999888864   356787 889999999987

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=84.14  E-value=5.6  Score=30.73  Aligned_cols=50  Identities=8%  Similarity=0.047  Sum_probs=42.0

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcc-eEEEECC
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFEG   79 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~-Q~Lif~G   79 (333)
                      +...|+|.+.+.|..+.+.++++.+..+|..+++...+++..+ ..+.|..
T Consensus         3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D   53 (89)
T 1vd2_A            3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID   53 (89)
T ss_dssp             CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred             CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence            3457899999999999999999999999999999999987654 5566643

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=83.55  E-value=3.8  Score=36.76  Aligned_cols=61  Identities=13%  Similarity=0.128  Sum_probs=50.3

Q ss_pred             EEEEEecCCchHHHHHHHHHhcCCCCCCC-ceEEEE-C----CeecCC-CCcccccCCCCCCEEEEEeec
Q 019968          122 FEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELIC-D----GEELED-QRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       122 ~~l~V~~sdTV~~LK~~I~~~~Gip~~~~-~QrLif-~----Gk~LeD-~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      ++..+...+||.+|+.++....+++  ++ +-||-. .    ...|.| +.+|.++++.++..|.+-++.
T Consensus       154 ~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~  221 (231)
T 3jyu_A          154 LSCHFSKADTIATIEKEMRKLFNIP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN  221 (231)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTTCC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred             EEEEecccCcHHHHHHHHHHHhCCC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence            5677899999999999999999998  66 578864 3    245665 689999999999999987774

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=83.19  E-value=4.9  Score=30.90  Aligned_cols=60  Identities=10%  Similarity=0.218  Sum_probs=52.3

Q ss_pred             EEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        44 ~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      .+.-.++-..++..||..++.+.|++-+...+.+.+..|. ++.+|.+.+++-.-.|.+.+
T Consensus         4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~-~~k~LvdQcVqgeGlVQinv   63 (89)
T 2juo_A            4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLD-PDRSLFDQGVKTDGTVQLSV   63 (89)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECC-TTSBTTTSSCCCCSEEEEEE
T ss_pred             hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccC-CCccHHHhhcccccEEEEEE
Confidence            3455678889999999999999999999999999999997 99999999998877777654

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=82.99  E-value=2.5  Score=31.30  Aligned_cols=64  Identities=9%  Similarity=0.158  Sum_probs=46.1

Q ss_pred             EEEEEEeCC-eEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           34 ILIFLSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        34 M~I~Vt~~G-~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      |+|.|++.| ....+++.++.||++|-.    ..|+++..-.+..+|+.+.+|.       +.+|+.|.++.-..+
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv~~V~G   65 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVLRLIKG   65 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEECSSCSC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-------CCCCCEEEEEEeecc
Confidence            788887544 456689999999987654    5789988887778999887444       335888877644333

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=82.80  E-value=7.4  Score=39.99  Aligned_cols=78  Identities=19%  Similarity=0.378  Sum_probs=53.2

Q ss_pred             CCcEEEEEE-eC---CeEEEEEecCCCCHHHHHHHHHHh--hCCCC------cceEEEE-C---Ce-ecccCC-------
Q 019968           31 NDSILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-E---GR-ELARSN-------   86 (333)
Q Consensus        31 ~~~M~I~Vt-~~---G~~~~i~V~~sdTV~~LK~kI~~~--~gip~------~~Q~Lif-~---G~-~L~~D~-------   86 (333)
                      ..+|.++|. ..   ...+++.|...|||.++|.||-..  .|+|.      +...|-+ .   |+ .|.+.+       
T Consensus       231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~  310 (627)
T 3ig3_A          231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC  310 (627)
T ss_dssp             CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred             ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence            557888884 22   356889999999999999999875  45554      3444543 2   33 244211       


Q ss_pred             -----ccccccccccccceeeeeeccc
Q 019968           87 -----SRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        87 -----~tL~dygI~~gstV~Lv~rlsd  108 (333)
                           .||+.|+|.+|++|-|+.+..+
T Consensus       311 ~wkrLNTL~HY~V~Dga~v~L~p~~~~  337 (627)
T 3ig3_A          311 DWKRVNSLAHYQVTDGSLVALVPKQVS  337 (627)
T ss_dssp             TEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred             ceeEecchhhcCCCCCceEEEEecccc
Confidence                 3799999999999999887654

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=82.67  E-value=6.2  Score=40.64  Aligned_cols=78  Identities=18%  Similarity=0.357  Sum_probs=52.8

Q ss_pred             CCcEEEEEE-eC------CeEEEEEecCCCCHHHHHHHHHHh--hCCCCc------ceEEEE-C---Ce-ecccCC----
Q 019968           31 NDSILIFLS-VG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF-E---GR-ELARSN----   86 (333)
Q Consensus        31 ~~~M~I~Vt-~~------G~~~~i~V~~sdTV~~LK~kI~~~--~gip~~------~Q~Lif-~---G~-~L~~D~----   86 (333)
                      ..++.++|- ..      ...+++.|...|||.++|.||-..  .|+|.+      ...|-+ .   |+ .|.+.+    
T Consensus       255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~  334 (644)
T 3hm6_X          255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE  334 (644)
T ss_dssp             CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred             ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence            557788874 22      245889999999999999999864  566654      334543 2   33 355212    


Q ss_pred             --------ccccccccccccceeeeeeccc
Q 019968           87 --------SRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        87 --------~tL~dygI~~gstV~Lv~rlsd  108 (333)
                              .||+.|+|.+|++|-|+.+...
T Consensus       335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~~  364 (644)
T 3hm6_X          335 VQGLWRRLNTLQHYKVPDGATVALVPCLTK  364 (644)
T ss_dssp             EETTEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred             ecCcceeecchhhcCCCCCcEEEEEecccc
Confidence                    3899999999999998877654

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=82.23  E-value=3.1  Score=34.26  Aligned_cols=73  Identities=19%  Similarity=0.347  Sum_probs=49.3

Q ss_pred             CCcEEEEEEe----C------CeEEEEEecCCCCHHHHHHHHHHh----hCCCCc----ceEEEE-CC---eeccc----
Q 019968           31 NDSILIFLSV----G------GSVIPMRVMESDSIASVKLRIQSY----NGFFVK----KQKLVF-EG---RELAR----   84 (333)
Q Consensus        31 ~~~M~I~Vt~----~------G~~~~i~V~~sdTV~~LK~kI~~~----~gip~~----~Q~Lif-~G---~~L~~----   84 (333)
                      ..++.++|..    .      ...+++.|...|||.++|.||-..    .|+|.+    ...|-+ .|   ..|.+    
T Consensus        17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t   96 (126)
T 3kuz_A           17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS   96 (126)
T ss_dssp             CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred             eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence            4567788754    2      246899999999999999999764    477654    334433 22   23331    


Q ss_pred             -----CC----ccccccccccccceeee
Q 019968           85 -----SN----SRVRDYGLADGNVLHLV  103 (333)
Q Consensus        85 -----D~----~tL~dygI~~gstV~Lv  103 (333)
                           ++    .||+.|+|.+|+++-|+
T Consensus        97 S~~~e~~wkrLNTL~HY~V~Dgatlal~  124 (126)
T 3kuz_A           97 SVILEDGITKLNTIGHYEISNGSTIKVF  124 (126)
T ss_dssp             CCBCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred             ceEecCCeeEeccccccCCCCCCEEEEe
Confidence                 11    26788999999998765

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=82.22  E-value=3.6  Score=36.55  Aligned_cols=62  Identities=15%  Similarity=0.125  Sum_probs=50.2

Q ss_pred             EEEEEEecCCchHHHHHHHHHhcCCCCCCC-ceEEE--E-CC--eecCC-CCcccccCCCCCCEEEEEeec
Q 019968          121 VFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELI--C-DG--EELED-QRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       121 ~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~-~QrLi--f-~G--k~LeD-~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      .+++.+...+||.+|+.++....+++  ++ +-||-  + .+  ..|+| +.||.++++.++..|.+-+|.
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~  209 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN  209 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence            35678899999999999999999998  65 57775  2 22  34555 579999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-13
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	9e-06
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	2e-12
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	1e-06
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	1e-11
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	3e-06
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	3e-11
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	4e-06
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	5e-11
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-07
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	6e-11
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	3e-09
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	2e-10
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	1e-07
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	2e-10
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	3e-10
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	1e-09
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	7e-10
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-08
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	1e-09
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	2e-09
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	1e-07
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	5e-09
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	5e-06
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	6e-09
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-08
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	1e-08
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-08
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	1e-08
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	1e-06
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	1e-08
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	3e-08
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-05
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-08
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	1e-06
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	4e-08
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-05
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	4e-08
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	6e-08
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	9e-08
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	2e-07
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-07
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	3e-05
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-07
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	1e-06
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	3e-05
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	6e-06
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	6e-06
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	0.004
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	9e-06
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	1e-05
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	7e-04
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-05
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-05
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	2e-04
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	0.001
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	2e-04
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	3e-04
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-04
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	0.001

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (153), Expect = 3e-13
 Identities = 11/75 (14%), Positives = 34/75 (45%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
                ++V     +++ ++  +  +G   ++ ++V+  + L   +  +  YGL DG+++ 
Sbjct: 21  EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVV 80

Query: 102 LVLRLSDLQAITVTT 116
           L+ + +        T
Sbjct: 81  LLQKDNVGLRTPGRT 95

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 9e-06
 Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 7/86 (8%)

Query: 112 ITVTTVC----GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-LEDQRL 166
           ITV  V        F   V     +   +     +     +    +++   +   +D   
Sbjct: 10  ITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAE--EAQIVYMEQLLTDDHCS 67

Query: 167 ITDICKRNEAVIHLLVRKSAKVRAKP 192
           +     ++  ++ LL + +  +R   
Sbjct: 68  LGSYGLKDGDMVVLLQKDNVGLRTPG 93

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 28  KLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNS 87
           ++ N        + G V+   +  +D ++ +K++I    G    KQKL +EG  +  SNS
Sbjct: 7   QVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNS 66

Query: 88  RVRDYGLADGNVLHLVLRL 106
            +  Y +A+G V+HL L+ 
Sbjct: 67  -LAYYNMANGAVIHLALKE 84

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVI 178
           G+V  F +     V  +K +I +     +    Q+L  +G  ++D   +      N AVI
Sbjct: 21  GQVLVFTLPLTDQVSVIKVKIHEA--TGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 179 HLLVRK 184
           HL +++
Sbjct: 79  HLALKE 84

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 1e-11
 Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDI 170
           +T+ T+  + F+  ++    V  +K++I  +   +   +  Q+LI  G+ L D   + + 
Sbjct: 3   VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62

Query: 171 CKRNEAVIHLLVRKSAKVRA 190
               +  + ++V K   V  
Sbjct: 63  KIDEKNFVVVMVTKPKAVST 82

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 12/70 (17%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 39  SVGGSVIPMRVMESDSIASVKLRIQS---YNGFFVKKQKLVFEGRELARSNSRVRDYGLA 95
           ++      + +   +++ ++K +I+S    + F V  QKL++ G+ L   ++ +++Y + 
Sbjct: 7   TLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKIL-NDDTALKEYKID 65

Query: 96  DGNVLHLVLR 105
           + N + +++ 
Sbjct: 66  EKNFVVVMVT 75

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (138), Expect = 3e-11
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 18/96 (18%)

Query: 30  SNDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQK------------ 74
           S+ S  + + V    G V+P+ V+++ ++  +K  IQ Y     +++             
Sbjct: 2   SSGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWR 61

Query: 75  ---LVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107
              L   G +L     ++RDYG+ + + +  + +L 
Sbjct: 62  TYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLG 97

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 14/90 (15%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKK-------------GREFVDLKNQELICDG 158
           + V  + G+V    V +   V  +K+ I +                     +   L   G
Sbjct: 10  VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 69

Query: 159 EELEDQR-LITDICKRNEAVIHLLVRKSAK 187
           E+L + R  + D   RN   +  + +   K
Sbjct: 70  EKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (135), Expect = 5e-11
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 33  SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           S+ I +  G     + V    ++   K  I   NG  V  Q+L++ G+ L    + V  Y
Sbjct: 1   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQT-VESY 59

Query: 93  GLADGNVLHLVLR 105
            + DG+ +HLV  
Sbjct: 60  HIQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I + +   K +E +V     V   K+ I K     + + NQ LI  G+ L+D + +    
Sbjct: 4   IHIKSGQDK-WEVNVAPESTVLQFKEAINKA--NGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 172 KRNEAVIHLLVRK 184
            ++   +HL+  +
Sbjct: 61  IQDGHSVHLVKSQ 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 6e-11
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           ++ + I + +  G      V  + ++A +K ++    G       L FEG+ L      +
Sbjct: 1   DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPL 59

Query: 90  RDYGLADGNVLHLVLRL 106
            +YGL   + + + LRL
Sbjct: 60  GEYGLKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V    G+   + V   + V ++KQQ++       DL       +G+ LEDQ  + +  
Sbjct: 6   ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWL--TFEGKPLEDQLPLGEYG 63

Query: 172 KRNEAVIHLLVR 183
            +  + + + +R
Sbjct: 64  LKPLSTVFMNLR 75

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           +F+        P+ V    SI  +K  +    G    + +++F G+EL    + V++  L
Sbjct: 5   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLT-VQNCDL 63

Query: 95  ADGNVLHLVLRL 106
              +++H+V R 
Sbjct: 64  EQQSIVHIVQRP 75

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V       F   V+   ++  +K+ +AK+  + V      +I  G+EL +   + +  
Sbjct: 5   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKR--QGVPADQLRVIFAGKELPNHLTVQNCD 62

Query: 172 KRNEAVIHLLVR 183
              ++++H++ R
Sbjct: 63  LEQQSIVHIVQR 74

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIA-KKGREFVDLKNQELICDGEELEDQRLITDI 170
           IT+ T+  + F+  +E    V  +K++I  +KGR+   +  Q+LI  G+ L D   I D 
Sbjct: 5   ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64

Query: 171 CKRNEAVIHLLV 182
               +  + ++V
Sbjct: 65  RIDEKNFVVVMV 76

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + +  +D+I  +K R++   G    +Q+L++ G++LA   +  +DY +  G+VLH
Sbjct: 10  GKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT-AKDYNIEGGSVLH 68

Query: 102 LVLRL 106
           LVL L
Sbjct: 69  LVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.2 bits (125), Expect = 1e-09
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK  E  +E    +  +K+++ +K  E +    Q LI  G++L D +   D  
Sbjct: 3   IKVKTLTGKEIEIDIEPTDTIDRIKERVEEK--EGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 172 KRNEAVIHLLVR 183
               +V+HL++ 
Sbjct: 61  IEGGSVLHLVLA 72

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 7e-10
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + LH
Sbjct: 10  GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKESTLH 68

Query: 102 LVLRL 106
           LVLRL
Sbjct: 69  LVLRL 73

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 1e-09
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 43  SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102
            V   +      +  +   ++   G     QKL+F+G+ L    + +   G+ DG  + L
Sbjct: 16  HVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVML 75

Query: 103 VLR 105
           + +
Sbjct: 76  IGK 78

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
            +  I +F+ +  G      +  +  I  +K +I+   G   K+Q+L F+G+ L +    
Sbjct: 4   GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVL-QDWLG 62

Query: 89  VRDYGLADGNVLHLVLRL 106
           +  YG+ D + L L  + 
Sbjct: 63  LGIYGIQDSDTLILSKKK 80

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V    G  + + +     +  +KQQI  +  + +  K Q+L   G+ L+D   +    
Sbjct: 10  VFVKNPDGGSYAYAINPNSFILGLKQQIEDQ--QGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 172 KRNEAVIHLLVRK 184
            ++   + L  +K
Sbjct: 68  IQDSDTLILSKKK 80

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (121), Expect = 5e-09
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 100 LHLVLRLSDLQAITVTTVCGKVFE--FHVERGRNVGYVKQQIAKKGREFV-DLKNQELIC 156
            HL ++L+D      + +     E   +   G ++ ++KQ IA K +E V D +  +LI 
Sbjct: 6   WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY 65

Query: 157 DGEELEDQRLITDICKRNEAVIHLLVR 183
            G +L+D + +     +  + +H+L +
Sbjct: 66  CGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 49  VMESDSIASVKLRIQ---SYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105
            +   SI+ +K  I      +    +   L++ GR+L    + +  YG+  G+ +H++ +
Sbjct: 34  SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQT-LDFYGIQPGSTVHVLRK 92

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 6e-09
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V T+  +   F V    NV   K+ IA      +  + Q LI  G  L+D + + +  
Sbjct: 3   VLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQE-Y 59

Query: 172 KRNEAVIHLLVRK 184
                VIHL+ R 
Sbjct: 60  NVGGKVIHLVERA 72

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++        V    ++   K  I +      +KQ+L+++GR L + + ++++Y +  G 
Sbjct: 7   TLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVL-QDDKKLQEYNV-GGK 64

Query: 99  VLHLVLR 105
           V+HLV R
Sbjct: 65  VIHLVER 71

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  + + V  +D++  +K R+ +  G     Q+  F GR L        +  +    V+ 
Sbjct: 13  GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMK-FEELKIPKDYVVQ 71

Query: 102 LVLRL 106
           +++  
Sbjct: 72  VIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + +    GK  +  V     V ++K+++     E V+  +Q     G  L D+    ++ 
Sbjct: 6   LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA--EGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 172 KRNEAVIHLLVRKSA 186
              + V+ ++V +  
Sbjct: 64  IPKDYVVQVIVSQPV 78

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  + ++    D+I  +K  I +  G    K  L           S + DY + DG  L 
Sbjct: 38  GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVS-LGDYEIHDGMNLE 96

Query: 102 LVLR 105
           L  +
Sbjct: 97  LYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +      GK           +G +K+ IA +           L       +D   + D  
Sbjct: 31  VVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ--TGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 172 KRNEAVIHLLVR 183
             +   + L  +
Sbjct: 89  IHDGMNLELYYQ 100

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
            +  I + L  +  +         D++ ++K +          + KL+++GR L      
Sbjct: 4   GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQE---SQMKLIYQGRLLQDPART 60

Query: 89  VRDYGLADGNVLHLVLR 105
           +    + +  V+H    
Sbjct: 61  LSSLNITNNCVIHCHRS 77

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 49  VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107
           +     +  ++ +IQ         Q+L + G+++   ++ + DY +   + + L++R S
Sbjct: 19  LSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHT-LFDYEVRLNDTIQLLVRQS 76

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 112 ITVTTVCGKVFEF--HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITD 169
           I V T+ G+       + R   V  ++++I +     V+   Q L   G+++ED   + D
Sbjct: 3   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL--FHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 170 ICKRNEAVIHLLVRKS 185
              R    I LLVR+S
Sbjct: 61  YEVRLNDTIQLLVRQS 76

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 30  SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           S+  I + +          + E+ ++   K +I  Y      +  L+F G+ L      +
Sbjct: 7   SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRD-QDIL 65

Query: 90  RDYGLADGNVLHLVLR 105
              G+ DG+ +H+V+R
Sbjct: 66  SQRGILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           ++V T      EF +    NV   K+QI+K      +     LI  G+ L DQ +++   
Sbjct: 13  VSVKTPQDC-HEFFLAENSNVRRFKKQISKY--LHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 172 KRNEAVIHLLVR 183
             + + +H++VR
Sbjct: 70  ILDGSTVHVVVR 81

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 4e-08
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 112 ITVTTVCGKVFEFHVERGRN--VGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITD 169
           + V +   +  +  +   R   VG++K  +++   E    ++Q LI  G+ L D + + D
Sbjct: 10  LLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRD 69

Query: 170 ICKRNEA--VIHLLVR 183
           +  + E   V+HL+  
Sbjct: 70  LLPKQEKRHVLHLVCN 85

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 45  IPMRVMESDSIASVKLRIQSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLA--DGNVL 100
           + +      S+  +K  +          + Q+L++ G+ L      +RD        +VL
Sbjct: 22  LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC-LRDLLPKQEKRHVL 80

Query: 101 HLVLRLS 107
           HLV  + 
Sbjct: 81  HLVCNVK 87

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 4e-08
 Identities = 16/74 (21%), Positives = 31/74 (41%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV  + G  F+  +    +V  +K QI +K       +   +   G  L+D+  +    
Sbjct: 3   LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 62

Query: 172 KRNEAVIHLLVRKS 185
               + + L+V KS
Sbjct: 63  LGPGSTVLLVVDKS 76

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 6e-08
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR-VRDYGLADGNV 99
            G+   + +  S S++ +K +I    G    +Q+L      +A  +   +   GL  G+ 
Sbjct: 9   AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGST 68

Query: 100 LHLVLRLS 107
           + LV+  S
Sbjct: 69  VLLVVDKS 76

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 9e-08
 Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 34  ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYG 93
           + + +    + I     ES ++  +K  ++        +Q+L  + + L    + + + G
Sbjct: 2   VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKT-LGECG 60

Query: 94  LADGN-------VLHLVLRLSD 108
                        + L  R  D
Sbjct: 61  FTSQTARPQAPATVGLAFRADD 82

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 38  LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADG 97
           +    +     V    +I  ++ R+ +      + Q+L + G++L    + + DY +   
Sbjct: 8   IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYT-LFDYDVGLN 66

Query: 98  NVLHLVLR 105
           +++ L++R
Sbjct: 67  DIIQLLVR 74

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 30  SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           S   I + +          V ++ +I  +K  I         +  L+F G+   +    +
Sbjct: 4   SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKI-LKDPDSL 62

Query: 90  RDYGLADGNVLHLVLRLS 107
              G+ DG  +HLV++  
Sbjct: 63  AQCGVRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  +F V     +  +K++I+++           LI  G+ L+D   +    
Sbjct: 10  VTVKTPKDK-EDFSVTDTCTIQQLKEEISQR--FKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 172 KRNEAVIHLLVRKSAK 187
            R+   +HL++++  +
Sbjct: 67  VRDGLTVHLVIKRQHR 82

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.2 bits (107), Expect = 4e-07
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 32  DSILIFLSVGGSVIPM--RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR------ELA 83
           +   + ++   +  PM  +     S+  +K +++   G  V   ++           EL 
Sbjct: 3   EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELT 62

Query: 84  RSNSRVRDYGLADGNVLHLVLR 105
                ++D G+ DG  +H V  
Sbjct: 63  DGAKSLKDLGVRDGYRIHAVDV 84

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 34  ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYG 93
           I + +          V E+ S+   K  I         +  L+F G+ L   ++ +  +G
Sbjct: 33  IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDT-LIQHG 91

Query: 94  LADGNVLHLVLR 105
           + DG  +HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  EF V    +V   K+ I+K+           LI  G+ L+DQ  +    
Sbjct: 35  VTVKTPKEK-EEFAVPENSSVQQFKEAISKR--FKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 172 KRNEAVIHLLVR 183
             +   +HL+++
Sbjct: 92  IHDGLTVHLVIK 103

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 35  LIFLSVGGSVI-PMRVMESDSIASVKLRIQSYNGFF-------VKKQKLVFEGRELARSN 86
           + F    GS I P    ++ +++++K  + S            VK+ KL+  G+ L  S 
Sbjct: 10  IKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSK 69

Query: 87  SRVRDYGLADG------NVLHLVLRLS 107
           + V+DY             +H++++  
Sbjct: 70  T-VKDYRSPVSNLAGAVTTMHVIIQAP 95

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 9/76 (11%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 31  NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVR 90
              I + +S G S I  ++ ++  +  +        G  +   + +++G  + +++    
Sbjct: 2   ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPE 60

Query: 91  DYGLADGNVLHLVLRL 106
           D  + D +++      
Sbjct: 61  DLDMEDNDIIEAHREQ 76

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVI 178
                F +++   +  + +  AK  R+  ++ +   + DG  ++  +   D+   +  +I
Sbjct: 13  SSEIFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 70

Query: 179 HLLVR 183
                
Sbjct: 71  EAHRE 75

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.9 bits (98), Expect = 9e-06
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 33  SILIFLSVGGSVIPMRV-MESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
            +       G  + + V   S+++ S+K +I         KQKL  +   L  + S +  
Sbjct: 31  RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMS-LAH 89

Query: 92  YGLADGNVLHLVLRL 106
           Y +  G +L L LR 
Sbjct: 90  YNVGAGEILTLSLRE 104

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  + ++ +  DS+   K  +    G    K  L   G  L + +  + DY + D   L 
Sbjct: 11  GKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVL-KDHISLEDYEVHDQTNLE 69

Query: 102 L 102
           L
Sbjct: 70  L 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (81), Expect = 7e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V    GK          +VG  K+ ++   +         L   G  L+D   + D  
Sbjct: 4   VVVNDRLGKKVRVKCLAEDSVGDFKKVLSL--QIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 172 KRNEAVIHL 180
             ++  + L
Sbjct: 62  VHDQTNLEL 70

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 35  LIFLSV--GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           L+ L +    +   ++V    + + +K +I S  G     QK+++  + L   +  +R+ 
Sbjct: 17  LVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY--KGLVPEDKTLREI 74

Query: 93  GLADGNVLHLVLR 105
            +  G  + +V  
Sbjct: 75  KVTSGAKIMVVGS 87

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 33  SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE------LARSN 86
            + I  S+       R   S +IA  K +++   G      +L   G +      L + +
Sbjct: 9   MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQED 68

Query: 87  SRVRDYGLADGNVLHLVLR 105
           + +  Y + DG  +H++  
Sbjct: 69  ALLGSYPVDDGCRIHVIDH 87

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVD-LKNQELICDGEELEDQRLITDI 170
           I V     +     +     V  +KQ +        +  K   L   G+  E+   +  +
Sbjct: 10  IIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL 69

Query: 171 CKRNEAVIHLLVRKSA 186
             +    I ++  + +
Sbjct: 70  KLKPNTKIMMMGTRES 85

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 30  SNDSILIFLSVGGSVIP-MRVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARS 85
            +  + I +  GG       + E D++  +K  +++  G   ++QKL+    +G+     
Sbjct: 4   GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND 63

Query: 86  NSRVRDYGLADGNVLHLVLR 105
              +    L     + ++  
Sbjct: 64  VK-LGALKLKPNTKIMMMGT 82

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELA-------RSNSRVRD 91
                ++  ++ +S ++  VK  +       V +  L +E  ++             ++ 
Sbjct: 19  QPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQF 78

Query: 92  YGLADGNVLHLV 103
           Y + +G+ L + 
Sbjct: 79  YSVENGDCLLVR 90

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 7/63 (11%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
                 + +   +     K ++ +  G    +QK++ +G  L   +    +  + +G  +
Sbjct: 16  KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTL--KDDDWGNIKMKNGMTV 73

Query: 101 HLV 103
            ++
Sbjct: 74  LMM 76

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 33  SILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           +I +FL           +      +   ++ +I    G      K+V   ++  +    +
Sbjct: 17  TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQ-LQLGKTL 75

Query: 90  RDYGLADGNVLHLVLR 105
            + G+A      ++  
Sbjct: 76  EEQGVAHNVKAMVLEL 91

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V         F V+   ++  +K+   +  R+ V + +   + +G+ + D     ++ 
Sbjct: 5   LKVIGQDSSEIHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 172 KRNEAVIHLLVR 183
              E VI +   
Sbjct: 63  MEEEDVIEVYQE 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.81
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.81
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.8
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.8
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.78
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.77
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.76
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.75
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.75
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.74
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.74
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.74
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.73
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.71
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.71
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.71
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.7
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.7
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.7
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.69
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.68
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.68
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.67
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.65
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.65
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.64
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.64
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.64
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.63
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.63
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.62
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.62
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.62
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.6
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.6
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.59
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.59
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.58
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.57
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.57
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.57
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.56
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.54
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.54
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.53
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.52
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.52
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.52
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.52
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.51
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.5
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.5
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.47
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.47
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.44
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.42
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.36
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.35
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.33
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.32
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.28
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.21
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.19
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.12
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.11
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.09
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.0
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.97
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	98.97
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.89
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.79
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.02
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	96.89
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	95.24
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.83
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.67
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	94.61
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.44
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.07
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	93.47
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	92.24
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	83.63
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	81.54
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	80.09

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=2.2e-20  Score=140.42  Aligned_cols=73  Identities=26%  Similarity=0.381  Sum_probs=71.4

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      |+|+||+.+|++++++|++++||+++|++|+++.|+|  +++|+|+|+|++|+|+.+|++|+|++|++|||++|+
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~--~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIP--PVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            7899999999999999999999999999999999999  999999999999999999999999999999999985

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.7e-20  Score=142.04  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=73.4

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      +|+|+|++.+|++++++|++++||++||++|++++|+|  +++|+|+|+|++|+|+.+|++|+|+++++|||+.|+..
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCC--GGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcC--hhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            69999999999999999999999999999999999999  99999999999999999999999999999999998753

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.6e-20  Score=139.16  Aligned_cols=75  Identities=20%  Similarity=0.171  Sum_probs=72.7

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      +.|+|+|++.+|++++++|++++||.+||++|+++.|+|  +++|+|+|+|+.|+|+.+|++|||++|++|||++|+
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCC--hhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            469999999999999999999999999999999999999  999999999999999999999999999999999885

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.5e-20  Score=141.84  Aligned_cols=79  Identities=19%  Similarity=0.122  Sum_probs=75.2

Q ss_pred             cccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      .++.|+|+|++.+|++++++|++++||.+||++|++++|+|  +++|+|+|+|++|+|+++|++|+|+++++|||+.|+.
T Consensus         4 ~s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~   81 (87)
T d1wh3a_           4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKG   81 (87)
T ss_dssp             CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSC
T ss_pred             CCCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcC--hHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCC
Confidence            35689999999999999999999999999999999999999  9999999999999999999999999999999999865


Q ss_pred             C
Q 019968          186 A  186 (333)
Q Consensus       186 ~  186 (333)
                      .
T Consensus        82 ~   82 (87)
T d1wh3a_          82 S   82 (87)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-19  Score=138.27  Aligned_cols=74  Identities=27%  Similarity=0.285  Sum_probs=70.7

Q ss_pred             cceeEeeeCCc-EEEEE-EecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGK-VFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk-~~~l~-V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|+|.+|+ +++++ +++++||++||++|+++.|+|  +++|+|+|+|++|+|+.+|++|||++|++|||++|++
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~s   76 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS   76 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcC--hHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEcC
Confidence            89999999996 78885 899999999999999999999  9999999999999999999999999999999999975

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.7e-19  Score=135.37  Aligned_cols=74  Identities=32%  Similarity=0.447  Sum_probs=72.1

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|++++++|++++||.+||++|+.+.|+|  +++|+|+|+|+.|+|+.+|++|||++|++|||++|+.
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlr   74 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTT
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCC--hHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecC
Confidence            7999999999999999999999999999999999999  9999999999999999999999999999999999864

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-19  Score=136.95  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=73.1

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      .++|+||+.+|++++++|++++||++||++|++++|+|  +++|+|+|+|++|+|+++|++|+|++|++|||+++++.
T Consensus         3 e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p~   78 (80)
T d1ttna1           3 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV   78 (80)
T ss_dssp             SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC--STTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             eEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC--cccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            57899999999999999999999999999999999999  99999999999999999999999999999999998754

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-19  Score=136.28  Aligned_cols=73  Identities=27%  Similarity=0.294  Sum_probs=70.0

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      |+|+|++.+|++++++|++++||++||++|+++.|+|  +++|+|+|+|+.|+|+++|+||+| ++++|||+.|.+
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~P   73 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP   73 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCC--TTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSSC
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCC--hHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecCC
Confidence            7899999999999999999999999999999999999  999999999999999999999999 589999998864

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.3e-19  Score=133.11  Aligned_cols=73  Identities=25%  Similarity=0.256  Sum_probs=69.5

Q ss_pred             cceeEeeeCC-cEEEE-EEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          110 QAITVTTVCG-KVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       110 m~I~Vkt~~G-k~~~l-~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      |+|+|++.+| +++++ +|++++||++||++|+++.|+|  +++|+|+|+|++|+|+++|++|||++|++|||++|+
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR--PECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC--TTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCC--chhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            7899999999 57887 5999999999999999999999  999999999999999999999999999999999884

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-18  Score=131.39  Aligned_cols=75  Identities=23%  Similarity=0.371  Sum_probs=71.6

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ++.|+|+|+ .+|++++++|++++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|+
T Consensus         1 d~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~-d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           1 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence            368999995 79999999999999999999999999999999999999999998 9999999999999999999875

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.6e-18  Score=132.07  Aligned_cols=75  Identities=21%  Similarity=0.418  Sum_probs=72.1

Q ss_pred             cEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           33 SILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        33 ~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      .|+|||+ .+|++++++|++++||++||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||+.|+++
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcC-CCCCHHHcCCCCCCEEEEEeccCC
Confidence            6999996 78999999999999999999999999999999999999999998 999999999999999999999864

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.1e-18  Score=133.88  Aligned_cols=79  Identities=23%  Similarity=0.338  Sum_probs=74.6

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      +...|+|+|+ ++|++++++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+ |+.+|.+|+|++|++|||+.|.+.
T Consensus         4 ~s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~stl~l~~r~~~   82 (87)
T d1wh3a_           4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEECSCC
T ss_pred             CCCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcC-CCCcHHHcCCCCCCEEEEEecCCC
Confidence            5679999995 79999999999999999999999999999999999999999998 999999999999999999998765


Q ss_pred             c
Q 019968          109 L  109 (333)
Q Consensus       109 ~  109 (333)
                      +
T Consensus        83 g   83 (87)
T d1wh3a_          83 G   83 (87)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.74  E-value=1.3e-18  Score=130.52  Aligned_cols=72  Identities=33%  Similarity=0.638  Sum_probs=69.6

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      |+|+|+ ++|++++++|++++||+++|.+|+...|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|+
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~-d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEeeC
Confidence            899995 89999999999999999999999999999999999999999998 9999999999999999999875

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.8e-18  Score=130.75  Aligned_cols=75  Identities=36%  Similarity=0.619  Sum_probs=71.9

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      |+|+|+ ++|++++++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++|+.+|
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence            899995 89999999999999999999999999999999999999999998 9999999999999999999998764

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.3e-18  Score=134.65  Aligned_cols=76  Identities=18%  Similarity=0.298  Sum_probs=71.6

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC---CCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G---ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      |+|+||+.+|++++++|++++||++||++|+++.|   +|  +++|+|+|+|+.|+|+.+|++|||.+|++|||+++++.
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~--~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~~   78 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCC--ccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCCC
Confidence            89999999999999999999999999999999876   77  99999999999999999999999999999999998654


Q ss_pred             c
Q 019968          187 K  187 (333)
Q Consensus       187 ~  187 (333)
                      .
T Consensus        79 ~   79 (95)
T d1uela_          79 A   79 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.1e-18  Score=129.08  Aligned_cols=73  Identities=25%  Similarity=0.290  Sum_probs=70.4

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEE--CCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif--~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +|.||+.+|++++++|++++||++||++|++..|+|  +++|+|+|  +|+.|+|+.+|++|||++|++|||+++++
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip--~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~s   76 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKS   76 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCC--GGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECCC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccC--CccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEECC
Confidence            689999999999999999999999999999999999  99999999  79999999999999999999999999864

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=6.5e-18  Score=127.00  Aligned_cols=70  Identities=17%  Similarity=0.152  Sum_probs=68.4

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      |+|+|++..|++++++|++++||++||++|+++.|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~--~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCT--TTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhccc--ccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999999  999999999999999999999999999999985

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.4e-17  Score=126.31  Aligned_cols=73  Identities=16%  Similarity=0.325  Sum_probs=68.9

Q ss_pred             EEEEE-EeCCe-EEEEE-ecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           34 ILIFL-SVGGS-VIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        34 M~I~V-t~~G~-~~~i~-V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      |+|+| +++|+ +++++ +++++||++||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|.+
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~~sti~lv~r~s   76 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVRQS   76 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEECCC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEecc-CCCcHHHcCCCCCCEEEEEEEcC
Confidence            89999 58885 88886 99999999999999999999999999999999998 99999999999999999999864

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.6e-17  Score=124.68  Aligned_cols=72  Identities=22%  Similarity=0.281  Sum_probs=67.6

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      |+|.|++. ++++.++|++++||.+||++|++.+|+|  +++|+|+|+|+.|+|+.+|++|||++|++||||.++
T Consensus         2 i~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~~   73 (73)
T d2bwfa1           2 LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   73 (73)
T ss_dssp             EEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcC--hHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEeeC
Confidence            78999875 5679999999999999999999999999  999999999999999999999999999999998763

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=2.3e-17  Score=123.84  Aligned_cols=72  Identities=28%  Similarity=0.467  Sum_probs=68.9

Q ss_pred             cEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        33 ~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      +|+|+|+..+..++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+ |+.+|++|||++|++|||+.+
T Consensus         1 si~I~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           1 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeCCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEcc-CCCcHHHCCCCCCCEEEEEee
Confidence            589999888889999999999999999999999999999999999999998 999999999999999999865

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.4e-18  Score=127.17  Aligned_cols=72  Identities=24%  Similarity=0.307  Sum_probs=69.1

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC---CCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G---ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      .|+|+|++.+|++++++|++++||++||++|+++.|   +|  +++|||+|+|++|+|+.+|++|||++|++|++++
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~--~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCC--hHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            589999999999999999999999999999999987   77  9999999999999999999999999999999976

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.5e-17  Score=127.00  Aligned_cols=76  Identities=17%  Similarity=0.297  Sum_probs=72.0

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      ..|+|+|+ .+|++++++|++++||++||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||+++.+.
T Consensus         2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~sti~lvi~~p~   78 (80)
T d1ttna1           2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIVSQPV   78 (80)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             CeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcC-CCCcHHHcCCCCCCEEEEEecCCC
Confidence            57999995 79999999999999999999999999999999999999999998 999999999999999999987653

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.3e-17  Score=127.12  Aligned_cols=76  Identities=21%  Similarity=0.312  Sum_probs=70.7

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecCC
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~~  186 (333)
                      ..|+|+|++.++ ++.++|++++||++||++|++++|+|  +++|+|+|+|++|+|+.+|++|||++|++|||++|.+.
T Consensus         6 ~~i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           6 HLIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             TEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CEEEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcC--chhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCC
Confidence            358999999755 58999999999999999999999999  99999999999999999999999999999999998653

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.9e-17  Score=124.49  Aligned_cols=72  Identities=18%  Similarity=0.382  Sum_probs=68.0

Q ss_pred             EEEEE-EeCC-eEEEE-EecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           34 ILIFL-SVGG-SVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        34 M~I~V-t~~G-~~~~i-~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      |+|+| +++| +++++ +|++++||++||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|+
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEec-CCCCHHHcCCCCCCEEEEEEcc
Confidence            89999 5787 67887 599999999999999999999999999999999998 9999999999999999999986

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3e-17  Score=130.80  Aligned_cols=91  Identities=15%  Similarity=0.087  Sum_probs=77.3

Q ss_pred             ccccccccceeeeeeccc----ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCc
Q 019968           91 DYGLADGNVLHLVLRLSD----LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRL  166 (333)
Q Consensus        91 dygI~~gstV~Lv~rlsd----~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~t  166 (333)
                      +|+....+.-.++.+...    .++|+|++..|+++.++|++++||++||++|++++|+|  +++|+|+|+|+.|+|+.+
T Consensus         6 ~~~~~~ss~~~~~p~~~~~~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~t   83 (100)
T d1uh6a_           6 HHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--WNKIVLKKWYTIFKDHVS   83 (100)
T ss_dssp             CCCCCCCCCCSSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCSSCB
T ss_pred             ccccccCCcccccCCCCCCCCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCC--cceEEEEEEeecccCcCC
Confidence            344444444444443322    26999999999999999999999999999999999999  999999999999999999


Q ss_pred             ccccCCCCCCEEEEEee
Q 019968          167 ITDICKRNEAVIHLLVR  183 (333)
Q Consensus       167 L~dy~I~~gsvIhLv~r  183 (333)
                      |++|+|++|++|+|..+
T Consensus        84 L~dygI~~GstI~L~~~  100 (100)
T d1uh6a_          84 LGDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             HHHHTCCTTEEEEEECC
T ss_pred             HHHcCCCCCCEEEEEEC
Confidence            99999999999999753

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.6e-17  Score=125.42  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=72.5

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      +..+|+|+|+..|..++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||.+|++|||++|.+.
T Consensus         4 ~~~~i~I~Vkt~~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           4 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CCCEEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeecc-ccCcHHHcCCCCCCEEEEEECCCC
Confidence            356899999866777899999999999999999999999999999999999998 999999999999999999998754

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-17  Score=125.08  Aligned_cols=72  Identities=22%  Similarity=0.429  Sum_probs=68.3

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      |+|+|+ ++|++++++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|+ |+.+|.+|+| +|++|||+.|.+
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-d~~tL~dy~i-~~~ti~lv~r~P   73 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVERAP   73 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECC-SSSBHHHHTC-TTEEEBCCCSSC
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEcc-CCCCHHHhCC-CCCEEEEEecCC
Confidence            899995 89999999999999999999999999999999999999999998 9999999999 589999998753

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4e-16  Score=124.46  Aligned_cols=76  Identities=21%  Similarity=0.262  Sum_probs=70.5

Q ss_pred             CCCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           29 LSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        29 ~~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      .....|+|+|+..+..++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|
T Consensus        28 ~~~~~i~V~Vk~~~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~-D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          28 AEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEEC
T ss_pred             CCCCeEEEEEECCCccEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeeccc-CCCcHHHcCCCCCCEEEEEEC
Confidence            3466899999766667899999999999999999999999999999999999998 999999999999999999976

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1e-16  Score=120.29  Aligned_cols=69  Identities=22%  Similarity=0.254  Sum_probs=66.6

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeee
Q 019968           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        34 M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      |+|+| +..|++++++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+ |+.+|++|||++|++|+|.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~-d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEEC-TTSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEec-ccCcHHHcCCCCCCEEEEE
Confidence            78999 478999999999999999999999999999999999999999998 9999999999999999986

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=3e-16  Score=124.94  Aligned_cols=79  Identities=15%  Similarity=0.230  Sum_probs=72.0

Q ss_pred             ccccceeEeeeCCcEE-EEEEecCCchHHHHHHHHHh-----cCCCCCCCceEEEECCeecCCCCcccccCCCCCC----
Q 019968          107 SDLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKK-----GREFVDLKNQELICDGEELEDQRLITDICKRNEA----  176 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~-~l~V~~sdTV~~LK~~I~~~-----~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gs----  176 (333)
                      .+.|.|.||+.+|+.+ ++.|++++||.+||++|++.     .|+|..+++|||+|+|+.|+|+.||++|+|.+|+    
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~   84 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   84 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCC
Confidence            4678999999999976 79999999999999999875     6787567899999999999999999999999997    


Q ss_pred             --EEEEEeecC
Q 019968          177 --VIHLLVRKS  185 (333)
Q Consensus       177 --vIhLv~r~~  185 (333)
                        ++|||+|.+
T Consensus        85 ~~tmHlVvrpp   95 (101)
T d1se9a_          85 VTTMHVIIQAP   95 (101)
T ss_dssp             CEEEEEEECCC
T ss_pred             ceEEEEEeCCC
Confidence              999999975

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-16  Score=118.99  Aligned_cols=71  Identities=21%  Similarity=0.312  Sum_probs=67.5

Q ss_pred             EEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE--CCeecccCCccccccccccccceeeeeec
Q 019968           35 LIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        35 ~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif--~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      +|+|+ ++|++++++|++++||.+||.+|+.++|+|+++|+|+|  +|+.|. |+.+|++|||++|++|||+++.
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~-D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-SSSCSGGGTCCTTCEEEEEECC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeecc-CCCcHHHcCCCCCCEEEEEEEC
Confidence            68894 89999999999999999999999999999999999999  699998 9999999999999999999864

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.1e-16  Score=123.09  Aligned_cols=75  Identities=27%  Similarity=0.323  Sum_probs=69.6

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      +..|+|+|++.++ .++++|++++||.+||++|++..|+|  +++|+|+|+|+.|+|+.+|++|||++|++|||++|.
T Consensus         8 ~~~i~v~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~--~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1           8 SRIIRVSVKTPQD-CHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             SCEEEEEEECSSS-EEEEEEETTCCHHHHHHHHHHHTCSC--TTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             CCeEEEEEEcCCC-cEEEEECCCChHHHHHHHHHHHhCCC--hhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEeC
Confidence            3468999999765 46899999999999999999999999  999999999999999999999999999999999874

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.2e-16  Score=125.63  Aligned_cols=77  Identities=19%  Similarity=0.167  Sum_probs=70.9

Q ss_pred             CCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           28 KLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        28 ~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      +.+...|+|+|+ ..|+.+.++|+|++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|..+
T Consensus        23 ~~~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~dygI~~GstI~L~~~  100 (100)
T d1uh6a_          23 EGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             SSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEECC
T ss_pred             CCCCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeeccc-CcCCHHHcCCCCCCEEEEEEC
Confidence            334566899995 78999999999999999999999999999999999999999998 999999999999999999753

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3e-16  Score=125.20  Aligned_cols=73  Identities=25%  Similarity=0.299  Sum_probs=68.7

Q ss_pred             cccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       108 d~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      ..|+|+|++.++ .++++|++++||.+||++|++.+|+|  +++|+|+|+|++|+|+.+|++|||++|++|||++|
T Consensus        31 ~~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~--~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          31 KIIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSC--SSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             CeEEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcC--HHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            358999999766 57999999999999999999999999  99999999999999999999999999999999986

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.8e-16  Score=121.72  Aligned_cols=76  Identities=21%  Similarity=0.336  Sum_probs=70.5

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      +...|+|+|+..+..++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|.
T Consensus         7 ~~~~i~v~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~-d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1           7 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBCC
T ss_pred             CCCeEEEEEEcCCCcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccc-cCCcHHHcCCCCCCEEEEEEeC
Confidence            356799999866667899999999999999999999999999999999999998 8999999999999999999873

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.3e-16  Score=122.35  Aligned_cols=74  Identities=19%  Similarity=0.435  Sum_probs=68.9

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhC---CCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~g---ip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      |+|+|+ +.|++++++|++++||.+||.+|+++.|   +|+++|+|+|+|+.|. |+.+|++|||.+|++|+|+++.+.
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~-d~~tL~~y~I~~~s~i~lv~~~~~   78 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEcc-CCCcHHHcCCCCCCEEEEEECCCC
Confidence            899994 8999999999999999999999999876   8999999999999998 999999999999999999887543

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.9e-16  Score=119.83  Aligned_cols=67  Identities=24%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ++|++++++|++++||++||++|++++|+|  +++|+|+|+|+.|+|+.+|++|||.+|++|||++|+.
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip--~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~R   85 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMP--AGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKER   85 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCC--TTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCC--hHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecC
Confidence            689999999999999999999999999999  9999999999999999999999999999999999864

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.2e-16  Score=118.59  Aligned_cols=71  Identities=24%  Similarity=0.506  Sum_probs=67.4

Q ss_pred             cEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC---CCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        33 ~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~g---ip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      +|+|+| +++|++++++|++++||.+||.+|+...|   +|+++|+|+|+|+.|. |+.+|++|||++|++|++++
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~-D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCcc-CCCcHHHcCCCCCCEEEEEE
Confidence            689999 48999999999999999999999999987   8999999999999998 99999999999999998875

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=6.4e-16  Score=123.35  Aligned_cols=78  Identities=13%  Similarity=0.148  Sum_probs=71.4

Q ss_pred             ccccceeE----eeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeec-CCCCcccccCCCCCCEEEEE
Q 019968          107 SDLQAITV----TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL-EDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       107 sd~m~I~V----kt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~L-eD~~tL~dy~I~~gsvIhLv  181 (333)
                      +.+|.|+|    +..+|.+|+++|+++.||.+||++|+.+.|+|  +++|+|+|+|++| +|..+|++|||++|++|||+
T Consensus         5 ~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip--~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~   82 (102)
T d1v5oa_           5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLL   82 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTEEEEEC
T ss_pred             cCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCC--cceEEEEeCCeEeecccCCHHHcCCCCCCEEEEE
Confidence            45789999    67789999999999999999999999999999  9999999999999 46789999999999999998


Q ss_pred             eecCC
Q 019968          182 VRKSA  186 (333)
Q Consensus       182 ~r~~~  186 (333)
                      .+...
T Consensus        83 ~r~~~   87 (102)
T d1v5oa_          83 QKDNV   87 (102)
T ss_dssp             BCCCC
T ss_pred             ECCCC
Confidence            87653

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.7e-16  Score=125.00  Aligned_cols=78  Identities=17%  Similarity=0.226  Sum_probs=70.6

Q ss_pred             cccccceeEeeeCCcEEEEEEecCCchHHHHHHH--------HHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCE
Q 019968          106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQI--------AKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAV  177 (333)
Q Consensus       106 lsd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I--------~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsv  177 (333)
                      ..+.|.|.|++.+|+++++.|++++||.+||++|        +++.++|  +++|||+|+|+.|+|+.+|++|+|.+|++
T Consensus        13 ~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~--~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~   90 (116)
T d1wgha_          13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSS--PNILRLIYQGRFLHGNVTLGALKLPFGKT   90 (116)
T ss_dssp             CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCC--TTTEEEEETTEEECSSCBTTTTTCCSSCE
T ss_pred             CCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCC--hHHeEEEECCEEecCCCCHHHcCCCCCCE
Confidence            4466889999999999999999999999999999        4667888  99999999999999999999999999986


Q ss_pred             --EEEEeecC
Q 019968          178 --IHLLVRKS  185 (333)
Q Consensus       178 --IhLv~r~~  185 (333)
                        |||+.|..
T Consensus        91 ~~lhlv~r~~  100 (116)
T d1wgha_          91 TVMHLVARET  100 (116)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEeCCC
Confidence              88887754

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1e-15  Score=122.10  Aligned_cols=83  Identities=14%  Similarity=0.257  Sum_probs=73.6

Q ss_pred             CCCcEEEEEE-----eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeee
Q 019968           30 SNDSILIFLS-----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        30 ~~~~M~I~Vt-----~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~  104 (333)
                      +...|.|+|+     +++.+++++|++++||.+||.+|+.++|+|+++|+|+|+|+.|.+|+.+|++|||++|++|+|+.
T Consensus         4 ~~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~   83 (102)
T d1v5oa_           4 GSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ   83 (102)
T ss_dssp             CSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred             CcCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEE
Confidence            4557888882     57899999999999999999999999999999999999999997577899999999999999998


Q ss_pred             ecccccce
Q 019968          105 RLSDLQAI  112 (333)
Q Consensus       105 rlsd~m~I  112 (333)
                      +.......
T Consensus        84 r~~~~~~~   91 (102)
T d1v5oa_          84 KDNVGLRT   91 (102)
T ss_dssp             CCCCCCSS
T ss_pred             CCCCCCCC
Confidence            87655443

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2e-16  Score=126.93  Aligned_cols=78  Identities=19%  Similarity=0.234  Sum_probs=72.5

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceE---------------EEECCeecCCC-Cccccc
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQE---------------LICDGEELEDQ-RLITDI  170 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~Qr---------------Lif~Gk~LeD~-~tL~dy  170 (333)
                      +.+|+|+|++.+|++++++|+++.||++||++|++..++|  +++|+               |+|+|+.|.|+ .+|++|
T Consensus         5 ss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip--~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~   82 (105)
T d1v2ya_           5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY   82 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC--HHHhcccccccccccccceEEEECCEECcccCCCHHHc
Confidence            5689999999999999999999999999999999999999  99987               99999999665 699999


Q ss_pred             CCCCCCEEEEEeecCC
Q 019968          171 CKRNEAVIHLLVRKSA  186 (333)
Q Consensus       171 ~I~~gsvIhLv~r~~~  186 (333)
                      +|.+|++|||+.|+..
T Consensus        83 gI~~g~~l~lv~r~~~   98 (105)
T d1v2ya_          83 GIRNRDEVSFIKKLGQ   98 (105)
T ss_dssp             TCCSSEEEEEEECSCS
T ss_pred             CCCCCCEEEEEEecCC
Confidence            9999999999988654

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.9e-15  Score=119.11  Aligned_cols=75  Identities=17%  Similarity=0.128  Sum_probs=68.2

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecC-CCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~Le-D~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      +.+|+|+||+.+|+.+.++|++++||.+||++|+   ..+  +++|+|+|+|+.|. |.++|++|+|.+|++|||+++++
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~--~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~   79 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQ--ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SST--TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCC--cceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCC
Confidence            4579999999999999999999999999999986   446  89999999999995 67899999999999999998865


Q ss_pred             C
Q 019968          186 A  186 (333)
Q Consensus       186 ~  186 (333)
                      .
T Consensus        80 ~   80 (95)
T d1wiaa_          80 G   80 (95)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.7e-16  Score=125.30  Aligned_cols=79  Identities=20%  Similarity=0.465  Sum_probs=72.8

Q ss_pred             CCCCcEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceE---------------EEECCeecccCCcccccc
Q 019968           29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQK---------------LVFEGRELARSNSRVRDY   92 (333)
Q Consensus        29 ~~~~~M~I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~---------------Lif~G~~L~~D~~tL~dy   92 (333)
                      .+...|+|+| +.+|+.++++|++++||.+||.+|+..+++|+++|+               |+|.|+.|.+|+.+|.+|
T Consensus         3 sgss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~   82 (105)
T d1v2ya_           3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY   82 (105)
T ss_dssp             CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred             CCCCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHc
Confidence            3567999999 589999999999999999999999999999999997               999999998456799999


Q ss_pred             ccccccceeeeeecc
Q 019968           93 GLADGNVLHLVLRLS  107 (333)
Q Consensus        93 gI~~gstV~Lv~rls  107 (333)
                      ||++|++|||+.|+.
T Consensus        83 gI~~g~~l~lv~r~~   97 (105)
T d1v2ya_          83 GIRNRDEVSFIKKLG   97 (105)
T ss_dssp             TCCSSEEEEEEECSC
T ss_pred             CCCCCCEEEEEEecC
Confidence            999999999998864

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=1.1e-15  Score=123.84  Aligned_cols=80  Identities=24%  Similarity=0.276  Sum_probs=72.2

Q ss_pred             CCCcEEEEEE--eCCeEEEEEecC-CCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           30 SNDSILIFLS--VGGSVIPMRVME-SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        30 ~~~~M~I~Vt--~~G~~~~i~V~~-sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      +..+++|+|+  .+|++++++|.+ ++||.+||.+|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++|+
T Consensus        26 g~~ti~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ynI~~gsti~L~lr~  104 (111)
T d1we6a_          26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEECSS
T ss_pred             CCEEEEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEcc-ccCCHHHcCCCCCCEEEEEeeC
Confidence            3456666663  579999999997 99999999999999999999999999999998 9999999999999999999998


Q ss_pred             cccc
Q 019968          107 SDLQ  110 (333)
Q Consensus       107 sd~m  110 (333)
                      +++.
T Consensus       105 rGG~  108 (111)
T d1we6a_         105 RSGP  108 (111)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            8753

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=1.4e-15  Score=123.11  Aligned_cols=74  Identities=20%  Similarity=0.239  Sum_probs=66.9

Q ss_pred             cceeEee-eCCcEEEEEEec-CCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          110 QAITVTT-VCGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       110 m~I~Vkt-~~Gk~~~l~V~~-sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ++|+|++ .+|+++++.|.+ ++||.+||++|++++|+|  +++|+|+|+|+.|+|+.+|++|||++|++|||++|..
T Consensus        30 i~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~r  105 (111)
T d1we6a_          30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER  105 (111)
T ss_dssp             EEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSC
T ss_pred             EEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCC--ccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCC
Confidence            3444444 368999999987 999999999999999999  9999999999999999999999999999999999965

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2e-15  Score=116.84  Aligned_cols=67  Identities=28%  Similarity=0.520  Sum_probs=64.7

Q ss_pred             eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        40 ~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      ++|++++++|++++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|.+
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~-D~~tL~dY~I~~gsti~l~~r~R   85 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMANGAVIHLALKER   85 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEEC-TTSBHHHHTCCTTEEEEEEESCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcC-CCCCHHHcCCCCCCEEEEEEecC
Confidence            58999999999999999999999999999999999999999998 99999999999999999999875

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=3.8e-15  Score=117.40  Aligned_cols=76  Identities=16%  Similarity=0.067  Sum_probs=70.4

Q ss_pred             ccccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeecC
Q 019968          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~~  185 (333)
                      ++.|+|.||+.+++.+.++|++++||.+||++|++.+|+|  +++|+|+|+|+.|.|+ +|++|+|++|++|||+.++.
T Consensus         5 s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp--~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t~~   80 (96)
T d1wgga_           5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred             CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCcc--ceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEeeCC
Confidence            4578999999888888999999999999999999999999  9999999999999886 79999999999999987644

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.4e-15  Score=112.60  Aligned_cols=75  Identities=16%  Similarity=0.280  Sum_probs=69.1

Q ss_pred             cEEEEEEeCCeEEEEEe-----cCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           33 SILIFLSVGGSVIPMRV-----MESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        33 ~M~I~Vt~~G~~~~i~V-----~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      .|+|.|+..+..++++|     ++++||++||.+|+..+|+|+++|+|+|+|+.|.+|+.+|++|||++|++|+|+.+.+
T Consensus         1 gi~i~V~~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~~   80 (81)
T d1wxva1           1 GLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN   80 (81)
T ss_dssp             SEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred             CEEEEEEECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEecC
Confidence            38899999999999998     5789999999999999999999999999999997678899999999999999998753

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.1e-14  Score=114.67  Aligned_cols=76  Identities=14%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             CCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeeccc
Q 019968           30 SNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd  108 (333)
                      +...|+|+|+ ++|+.+.++|++++||.+||.+|+   .+++++|+|+|+|+.|.+|.++|.+|+|.+|++|||+++.+.
T Consensus         4 ~~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~   80 (95)
T d1wiaa_           4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CCCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCC
Confidence            5679999995 799999999999999999999986   468899999999999975778999999999999999987654

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.2e-14  Score=118.33  Aligned_cols=79  Identities=23%  Similarity=0.285  Sum_probs=70.7

Q ss_pred             CCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHH--------HHhhCCCCcceEEEECCeecccCCccccccccccc
Q 019968           27 EKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRI--------QSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADG   97 (333)
Q Consensus        27 ~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI--------~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~g   97 (333)
                      +..+...|+|+|+ ++|+++++.|++++||.+||.+|        +++.++|+++|||+|.|+.|. |+.+|.+|+|.+|
T Consensus        10 ~~~~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~-D~~tL~~~~i~~g   88 (116)
T d1wgha_          10 SHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFG   88 (116)
T ss_dssp             CCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSS
T ss_pred             CCCCCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEec-CCCCHHHcCCCCC
Confidence            3345778999995 89999999999999999999999        577899999999999999998 9999999999999


Q ss_pred             cc--eeeeeec
Q 019968           98 NV--LHLVLRL  106 (333)
Q Consensus        98 st--V~Lv~rl  106 (333)
                      ++  +||++|.
T Consensus        89 ~~~~lhlv~r~   99 (116)
T d1wgha_          89 KTTVMHLVARE   99 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEEeCC
Confidence            86  7777664

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.52  E-value=1.8e-14  Score=114.48  Aligned_cols=77  Identities=23%  Similarity=0.362  Sum_probs=70.0

Q ss_pred             CCcEEEEEE-eCCeEE-EEEecCCCCHHHHHHHHHHh-----hCCC--CcceEEEECCeecccCCcccccccccccc---
Q 019968           31 NDSILIFLS-VGGSVI-PMRVMESDSIASVKLRIQSY-----NGFF--VKKQKLVFEGRELARSNSRVRDYGLADGN---   98 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~-~i~V~~sdTV~~LK~kI~~~-----~gip--~~~Q~Lif~G~~L~~D~~tL~dygI~~gs---   98 (333)
                      .+.|+|+|+ ++|+.+ ++.+++++||.+||.+|++.     .|+|  +++|+|+|+|+.|. |+.+|++|+|.+|+   
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~-D~~tL~dy~i~~g~~~~   83 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG   83 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEec-CCCCHHHcCCCCCCcCC
Confidence            678999995 788876 79999999999999999875     7888  88999999999998 99999999999997   


Q ss_pred             ---ceeeeeeccc
Q 019968           99 ---VLHLVLRLSD  108 (333)
Q Consensus        99 ---tV~Lv~rlsd  108 (333)
                         ++||++|++.
T Consensus        84 ~~~tmHlVvrpp~   96 (101)
T d1se9a_          84 AVTTMHVIIQAPV   96 (101)
T ss_dssp             CCEEEEEEECCCS
T ss_pred             CceEEEEEeCCCC
Confidence               9999998764

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=7.4e-15  Score=114.16  Aligned_cols=77  Identities=16%  Similarity=0.331  Sum_probs=71.6

Q ss_pred             CCCcEEEEEEeCCeEEEE-EecCCCCHHHHHHHHHHhhCCCCcceEEE---ECCeecccCCccccccccccccceeeeee
Q 019968           30 SNDSILIFLSVGGSVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i-~V~~sdTV~~LK~kI~~~~gip~~~Q~Li---f~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      +...|.|+|+..|+.+++ +|++++||.+||.+|+.++|+|+++|+|+   |.|+.|. |+.+|.+|+|++|++|+|+.+
T Consensus         4 ~s~~~~i~Vk~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~-D~~tL~~~~i~~g~~i~lv~s   82 (90)
T d1v5ta_           4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECC
T ss_pred             CCCcEEEEEEECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCC-CcCcHHHcCCCCCCEEEEEee
Confidence            466899999999999998 69999999999999999999999999999   6899998 999999999999999999876


Q ss_pred             cc
Q 019968          106 LS  107 (333)
Q Consensus       106 ls  107 (333)
                      ..
T Consensus        83 ~~   84 (90)
T d1v5ta_          83 RE   84 (90)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-14  Score=113.47  Aligned_cols=77  Identities=25%  Similarity=0.355  Sum_probs=67.0

Q ss_pred             ccccceeEeeeCCc--EEEEEEecCCchHHHHHHHHHhcC--CCCCCCceEEEECCeecCCCCcccccCCCCC--CEEEE
Q 019968          107 SDLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKGR--EFVDLKNQELICDGEELEDQRLITDICKRNE--AVIHL  180 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk--~~~l~V~~sdTV~~LK~~I~~~~G--ip~~~~~QrLif~Gk~LeD~~tL~dy~I~~g--svIhL  180 (333)
                      +.+|+|+|++.+++  .++++|++++||.+||++|++..+  +|  +++|||+|+|+.|+|+.+|++|+...+  .+|||
T Consensus         5 s~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~--~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHL   82 (93)
T d1wgda_           5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHL   82 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEE
T ss_pred             CCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCC--hHHEEEEECCeEccCCCCHHHhCcccCCCCEEEE
Confidence            34689999998775  488999999999999999999975  77  999999999999999999999976544  49999


Q ss_pred             EeecC
Q 019968          181 LVRKS  185 (333)
Q Consensus       181 v~r~~  185 (333)
                      |++..
T Consensus        83 V~~~~   87 (93)
T d1wgda_          83 VCNVK   87 (93)
T ss_dssp             ECCCC
T ss_pred             EecCC
Confidence            98753

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.1e-14  Score=114.57  Aligned_cols=76  Identities=14%  Similarity=0.235  Sum_probs=70.8

Q ss_pred             CCCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           29 LSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        29 ~~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      .+.+.|.|.|++.+++++++|++++||.+||.+|+..+|+|+++|+|+|+|+ |. |+.+|.+|+|++|++|+|+.+.
T Consensus        13 ~~~~~i~v~V~~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~-D~~tL~~~~I~~gs~i~lvgs~   88 (95)
T d1v86a_          13 VGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VP-EDKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred             CCccEEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-cc-CCCcHHHCCCCCCCEEEEEecC
Confidence            3467899999999999999999999999999999999999999999999986 87 8999999999999999998654

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=115.41  Aligned_cols=73  Identities=7%  Similarity=-0.034  Sum_probs=66.9

Q ss_pred             cceeE--eeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          110 QAITV--TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       110 m~I~V--kt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      |+|++  +...|++++++|++++||++||.+|+++.|+|  +++|+|+|+|+.|+|+.||++|+|+++++|+++...
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~--~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~   92 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK   92 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCC--CeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcC
Confidence            44555  55778999999999999999999999999999  999999999999999999999999999999987654

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=2e-14  Score=113.18  Aligned_cols=76  Identities=9%  Similarity=0.139  Sum_probs=68.1

Q ss_pred             CCCcEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           30 SNDSILIFLSV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        30 ~~~~M~I~Vt~-~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      +...|+|+|+. +++.+.++|++++||.+||.+|+..+|+|+++|+|+|.|+.|. |+ +|++|||++|++|+|+....
T Consensus         4 ~s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~-d~-tL~~~gi~~g~~i~lv~t~~   80 (96)
T d1wgga_           4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCCC
T ss_pred             CCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccC-CC-cHHHCCCCCCCEEEEEeeCC
Confidence            46789999986 5555689999999999999999999999999999999999998 65 79999999999999986543

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.8e-14  Score=113.88  Aligned_cols=72  Identities=14%  Similarity=0.093  Sum_probs=62.6

Q ss_pred             ceeEeeeCCc-EEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCC-------EEEEEe
Q 019968          111 AITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEA-------VIHLLV  182 (333)
Q Consensus       111 ~I~Vkt~~Gk-~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gs-------vIhLv~  182 (333)
                      +|||+...++ ++.++|++++||.+||++|++++|+|  +++|+|+|+|++|+|+++|+||||.+++       +++|.+
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip--~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~   78 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF   78 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEE
Confidence            4777776664 67899999999999999999999999  9999999999999999999999996554       566655


Q ss_pred             ec
Q 019968          183 RK  184 (333)
Q Consensus       183 r~  184 (333)
                      +.
T Consensus        79 ~~   80 (103)
T d2c9wb1          79 RA   80 (103)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3.2e-14  Score=110.47  Aligned_cols=76  Identities=16%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             ccccceeEeeeCCcEEEE-EEecCCchHHHHHHHHHhcCCCCCCCceEEE---ECCeecCCCCcccccCCCCCCEEEEEe
Q 019968          107 SDLQAITVTTVCGKVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~l-~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi---f~Gk~LeD~~tL~dy~I~~gsvIhLv~  182 (333)
                      +..|.|+|+. .|+.+.+ +|++++||.+||++|++++|+|  +++|+|+   |.|+.|+|+.+|++|+|++|++|||+.
T Consensus         5 s~~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp--~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~   81 (90)
T d1v5ta_           5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG   81 (90)
T ss_dssp             CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred             CCcEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCC--HHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEe
Confidence            4679999986 6667776 7999999999999999999999  9999999   699999999999999999999999987


Q ss_pred             ecC
Q 019968          183 RKS  185 (333)
Q Consensus       183 r~~  185 (333)
                      +..
T Consensus        82 s~~   84 (90)
T d1v5ta_          82 TRE   84 (90)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            753

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.4e-14  Score=106.92  Aligned_cols=74  Identities=20%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             ccceeEeeeCCcEEEEEE-----ecCCchHHHHHHHHHhcCCCCCCCceEEEECCeec-CCCCcccccCCCCCCEEEEEe
Q 019968          109 LQAITVTTVCGKVFEFHV-----ERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL-EDQRLITDICKRNEAVIHLLV  182 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V-----~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~L-eD~~tL~dy~I~~gsvIhLv~  182 (333)
                      +|.|.| +..++.+.++|     ++++||++||++|++.+|+|  +++|+|+|+|+.| +|+.+|++||+++|++|+|+.
T Consensus         1 gi~i~V-~~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp--~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~   77 (81)
T d1wxva1           1 GLTVTV-THSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG   77 (81)
T ss_dssp             SEEEEE-ECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred             CEEEEE-EECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcC--HHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEE
Confidence            477888 44677888888     46889999999999999999  9999999999999 567899999999999999998


Q ss_pred             ecC
Q 019968          183 RKS  185 (333)
Q Consensus       183 r~~  185 (333)
                      |++
T Consensus        78 ~~~   80 (81)
T d1wxva1          78 KKN   80 (81)
T ss_dssp             CCS
T ss_pred             ecC
Confidence            864

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.1e-14  Score=111.73  Aligned_cols=76  Identities=13%  Similarity=0.101  Sum_probs=70.0

Q ss_pred             CCCcEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           30 SNDSILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        30 ~~~~M~I~Vt---~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      +..+|+|++.   ..|++++++|.+++||.+||.+|++..|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+++...
T Consensus        14 g~ati~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~-d~~tL~~~gI~~~s~i~vi~~~   92 (100)
T d1wjua_          14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKAMVLELK   92 (100)
T ss_dssp             CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEEEEECCC
T ss_pred             ceEEEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcC-CCcCHHHcCCCCCCEEEEEEcC
Confidence            4568999983   57899999999999999999999999999999999999999998 9999999999999999887643

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=6.3e-14  Score=110.08  Aligned_cols=72  Identities=14%  Similarity=0.107  Sum_probs=66.3

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      .|.|.|+ .+++++.++|++++||.+||++|++.+|+|  +++|+|+|+|+ |.|+.+|++|+|++|++|+|+.+.
T Consensus        17 ~i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp--~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~   88 (95)
T d1v86a_          17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP--PAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC--STTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSS
T ss_pred             EEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecC
Confidence            4677776 588999999999999999999999999999  99999999997 999999999999999999998653

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.5e-13  Score=108.28  Aligned_cols=72  Identities=18%  Similarity=0.229  Sum_probs=62.0

Q ss_pred             EEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccc-------cceeeeeec
Q 019968           36 IFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADG-------NVLHLVLRL  106 (333)
Q Consensus        36 I~V--t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~g-------stV~Lv~rl  106 (333)
                      |||  +..+.++.++|++++||.+||.+|+.++|+|+++|+|+|+|++|. |+.+|++|||.++       ++++|.++.
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~-D~~TL~dYgI~~~~~~~~~~~~~~l~~~~   80 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAFRA   80 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCcccccccCCcEEEEEEec
Confidence            556  467788999999999999999999999999999999999999998 9999999999554       456665554


Q ss_pred             cc
Q 019968          107 SD  108 (333)
Q Consensus       107 sd  108 (333)
                      .+
T Consensus        81 ~~   82 (103)
T d2c9wb1          81 DD   82 (103)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=4.3e-13  Score=105.10  Aligned_cols=85  Identities=21%  Similarity=0.231  Sum_probs=65.4

Q ss_pred             cceeeeeeccccc---ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcC--CCCCCCceEEEECCeecCCCCcccccCC
Q 019968           98 NVLHLVLRLSDLQ---AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR--EFVDLKNQELICDGEELEDQRLITDICK  172 (333)
Q Consensus        98 stV~Lv~rlsd~m---~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~G--ip~~~~~QrLif~Gk~LeD~~tL~dy~I  172 (333)
                      +..|+.+++.+..   ...+++.+.+ ....+..+.||.+||++|+++..  .| ++++|+|+|+|++|+|+.+|++|||
T Consensus         4 s~~~~~~~l~~~p~~pk~~i~~p~~~-~~~~~~~~~tV~~lK~~i~~~~~~~~P-~p~~~rLIy~Gk~L~D~~tL~~y~I   81 (94)
T d1x1ma1           4 SDWHLAVKLADQPLAPKSILQLPETE-LGEYSLGGYSISFLKQLIAGKLQESVP-DPELIDLIYCGRKLKDDQTLDFYGI   81 (94)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCS-SCSSCCCCCBHHHHHHHHHHHCTTTCC-CSSSEEEEETTEECCTTCBHHHHTC
T ss_pred             ccceEEEEEccCCCCCcceEECCCCc-cCccCCCccCHHHHHHHHHHHcccCCC-ChhheEEEECCeEECCCccHHHcCC
Confidence            5677888877653   3345444322 22234458899999999999864  43 3799999999999999999999999


Q ss_pred             CCCCEEEEEeec
Q 019968          173 RNEAVIHLLVRK  184 (333)
Q Consensus       173 ~~gsvIhLv~r~  184 (333)
                      ++|++||||.|.
T Consensus        82 ~~gstihLV~r~   93 (94)
T d1x1ma1          82 QPGSTVHVLRKS   93 (94)
T ss_dssp             CTTCEEEEEESS
T ss_pred             CCCCEEEEEEeC
Confidence            999999999873

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.2e-13  Score=103.93  Aligned_cols=77  Identities=17%  Similarity=0.238  Sum_probs=66.1

Q ss_pred             CCCcEEEEEE-eCC--eEEEEEecCCCCHHHHHHHHHHhhC--CCCcceEEEECCeecccCCcccccccccc--ccceee
Q 019968           30 SNDSILIFLS-VGG--SVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGLAD--GNVLHL  102 (333)
Q Consensus        30 ~~~~M~I~Vt-~~G--~~~~i~V~~sdTV~~LK~kI~~~~g--ip~~~Q~Lif~G~~L~~D~~tL~dygI~~--gstV~L  102 (333)
                      +...|+|+|+ +++  ..+++++++++||.+||.+|++..+  +|+++|+|+|+|+.|. |+.+|++|....  +.+|||
T Consensus         4 gs~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~-D~~~L~d~~~~~~~~~viHL   82 (93)
T d1wgda_           4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHL   82 (93)
T ss_dssp             CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEE
T ss_pred             CCCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEcc-CCCCHHHhCcccCCCCEEEE
Confidence            4667999996 444  4589999999999999999999954  9999999999999998 999999997654  459999


Q ss_pred             eeecc
Q 019968          103 VLRLS  107 (333)
Q Consensus       103 v~rls  107 (333)
                      +.+..
T Consensus        83 V~~~~   87 (93)
T d1wgda_          83 VCNVK   87 (93)
T ss_dssp             ECCCC
T ss_pred             EecCC
Confidence            98764

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.1e-12  Score=102.84  Aligned_cols=78  Identities=13%  Similarity=0.027  Sum_probs=68.9

Q ss_pred             ccccceeEeee-CCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCe-------ecCCCCcccccCCCCCCEE
Q 019968          107 SDLQAITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE-------ELEDQRLITDICKRNEAVI  178 (333)
Q Consensus       107 sd~m~I~Vkt~-~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk-------~LeD~~tL~dy~I~~gsvI  178 (333)
                      +.++.|+|++. ++..+..+++++.||.+||++|+..+|+|  +++|+|+|.|+       .++|+.+|++|++.+|++|
T Consensus         5 ss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip--~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~i   82 (95)
T d1v6ea_           5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI   82 (95)
T ss_dssp             CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred             CCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcC--chhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEE
Confidence            45688999773 55568899999999999999999999999  99999999887       4689999999999999999


Q ss_pred             EEEeecCC
Q 019968          179 HLLVRKSA  186 (333)
Q Consensus       179 hLv~r~~~  186 (333)
                      ||+.+.+.
T Consensus        83 hlvd~~p~   90 (95)
T d1v6ea_          83 HVIDHSGS   90 (95)
T ss_dssp             EEBCCSCC
T ss_pred             EEEeCCCC
Confidence            99987643

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.2e-12  Score=102.74  Aligned_cols=79  Identities=19%  Similarity=0.295  Sum_probs=69.3

Q ss_pred             CCCcEEEEEE--eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCee------cccCCcccccccccccccee
Q 019968           30 SNDSILIFLS--VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE------LARSNSRVRDYGLADGNVLH  101 (333)
Q Consensus        30 ~~~~M~I~Vt--~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~------L~~D~~tL~dygI~~gstV~  101 (333)
                      +...|.|+|+  +++..++..+++++||.+||.+|+..+|+|+.+|+|+|.|+.      |.+|+.+|.+|+|.+|++||
T Consensus         4 gss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ih   83 (95)
T d1v6ea_           4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH   83 (95)
T ss_dssp             CCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred             CCCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEE
Confidence            4568999996  455668899999999999999999999999999999998873      44599999999999999999


Q ss_pred             eeeeccc
Q 019968          102 LVLRLSD  108 (333)
Q Consensus       102 Lv~rlsd  108 (333)
                      |+.+.+.
T Consensus        84 lvd~~p~   90 (95)
T d1v6ea_          84 VIDHSGS   90 (95)
T ss_dssp             EBCCSCC
T ss_pred             EEeCCCC
Confidence            9987654

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.28  E-value=7.3e-12  Score=94.60  Aligned_cols=78  Identities=12%  Similarity=0.214  Sum_probs=72.3

Q ss_pred             CCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecccc
Q 019968           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (333)
Q Consensus        31 ~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rlsd~  109 (333)
                      .+.+.|.|+.+|+.+.+.|.+++++..||..++++.|+++++++|+|+|+.|. ++.|+++|+|++|++|+++++..+|
T Consensus         2 ~~~I~ikv~~~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~-~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           2 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             CSEEEEEEESSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             CcEEEEEECCCCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeC-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence            45688888778899999999999999999999999999999999999999998 9999999999999999999987654

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.21  E-value=2.5e-11  Score=91.54  Aligned_cols=72  Identities=11%  Similarity=0.217  Sum_probs=65.9

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      +.|.|++ +|+.+.+.|.+++++..||..++++.|++  +++|+|+|+|+.|.++.|+++|++++|++||+++++
T Consensus         5 I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~--~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q   76 (79)
T d1euvb_           5 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   76 (79)
T ss_dssp             EEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred             EEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCC--hHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEec
Confidence            3455554 67888999999999999999999999999  999999999999999999999999999999999875

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=2.4e-11  Score=95.34  Aligned_cols=74  Identities=15%  Similarity=0.203  Sum_probs=64.6

Q ss_pred             CCcEEEEEE----eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCe-------ecccCCccccccccccccc
Q 019968           31 NDSILIFLS----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR-------ELARSNSRVRDYGLADGNV   99 (333)
Q Consensus        31 ~~~M~I~Vt----~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~-------~L~~D~~tL~dygI~~gst   99 (333)
                      ..-++|.|+    .+++.+++++.+++||.+||.+|+..+|+|+++|+|+|.|+       +|.+|+++|.+|||++|++
T Consensus         7 ~~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~   86 (97)
T d1wjna_           7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC   86 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred             CCeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCE
Confidence            445666664    45788999999999999999999999999999999999886       3776899999999999999


Q ss_pred             eeeee
Q 019968          100 LHLVL  104 (333)
Q Consensus       100 V~Lv~  104 (333)
                      |++..
T Consensus        87 I~V~~   91 (97)
T d1wjna_          87 LLVRW   91 (97)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99864

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=6.1e-11  Score=92.98  Aligned_cols=65  Identities=14%  Similarity=0.080  Sum_probs=58.3

Q ss_pred             eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCee-------cC-CCCcccccCCCCCCEEEEEee
Q 019968          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-------LE-DQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       117 ~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~-------Le-D~~tL~dy~I~~gsvIhLv~r  183 (333)
                      .+++.++++|.++.||.+||.+|+..+|+|  +++|+|+|.|+.       |+ |.++|.+|+|++|++||+...
T Consensus        20 ~~~~~~~~kv~~~~TV~~LK~~i~~~~gip--~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~~~   92 (97)
T d1wjna_          20 PERQILEKQLPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS   92 (97)
T ss_dssp             SSSCCEEEEEETTSBHHHHHHHHHTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHHHHCcC--hHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEEeC
Confidence            456789999999999999999999999999  999999998873       53 789999999999999998543

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.11  E-value=9.1e-11  Score=90.79  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             CcEEEEEEe--CCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCe------ecccCCccccccccccccceeee
Q 019968           32 DSILIFLSV--GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR------ELARSNSRVRDYGLADGNVLHLV  103 (333)
Q Consensus        32 ~~M~I~Vt~--~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~------~L~~D~~tL~dygI~~gstV~Lv  103 (333)
                      +.+.|+|+.  ++..++..++++.||.+||.+|+..+|+|+..|+|+|.|+      .|.+|+.+|.+|||.+|++||++
T Consensus         3 ~~~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvv   82 (90)
T d1t0ya_           3 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   82 (90)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             cEEEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEE
Confidence            345777864  4444677899999999999999999999999999999886      36669999999999999999997


Q ss_pred             ee
Q 019968          104 LR  105 (333)
Q Consensus       104 ~r  105 (333)
                      -+
T Consensus        83 d~   84 (90)
T d1t0ya_          83 DV   84 (90)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.6e-10  Score=86.63  Aligned_cols=74  Identities=12%  Similarity=0.228  Sum_probs=70.0

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEeec
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r~  184 (333)
                      -+.|.|++.+|+.+.+.|.+++++..|+...+++.|++  +.+++|+|+|+.|.++.|+.+|++++|++|+++.+.
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~--~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q   75 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ   75 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECC
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence            35688899999999999999999999999999999999  999999999999999999999999999999999875

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.00  E-value=5.6e-10  Score=86.23  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=60.5

Q ss_pred             cceeEee-eCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCe-------ecCCCCcccccCCCCCCEEEEE
Q 019968          110 QAITVTT-VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE-------ELEDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt-~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk-------~LeD~~tL~dy~I~~gsvIhLv  181 (333)
                      ..+.|.+ .++.....++.++.||.+||.+|+..+|+|  +..|+|+|.|+       ..+|+++|.+||+.+|++||++
T Consensus         5 ~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip--~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvv   82 (90)
T d1t0ya_           5 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   82 (90)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             EEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCC--hhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEE
Confidence            3455533 233346778899999999999999999999  99999999876       3468999999999999999998


Q ss_pred             eecC
Q 019968          182 VRKS  185 (333)
Q Consensus       182 ~r~~  185 (333)
                      -+.+
T Consensus        83 d~~~   86 (90)
T d1t0ya_          83 DVTG   86 (90)
T ss_dssp             ECTT
T ss_pred             eCCC
Confidence            6543

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.6e-10  Score=83.60  Aligned_cols=75  Identities=17%  Similarity=0.322  Sum_probs=69.5

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeeecc
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rls  107 (333)
                      +.|+|.|+ .+|+.+.+.|.++.++..|+...+++.|+++++++|+|+|+.|. ++.|+++|++.+|++|+++.+..
T Consensus         1 e~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~-~~~T~~~l~~edgD~Idv~~~q~   76 (77)
T d2uyzb1           1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQT   76 (77)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEECCC
T ss_pred             CEEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence            35788885 78999999999999999999999999999999999999999998 89999999999999999987653

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=2.4e-10  Score=89.24  Aligned_cols=56  Identities=21%  Similarity=0.332  Sum_probs=50.0

Q ss_pred             cCCCCHHHHHHHHHHhh--CCC-CcceEEEECCeecccCCccccccccccccceeeeeec
Q 019968           50 MESDSIASVKLRIQSYN--GFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (333)
Q Consensus        50 ~~sdTV~~LK~kI~~~~--gip-~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~rl  106 (333)
                      ..+.||.+||.+|+++.  +.| +++|+|+|+|+.|+ |+.+|++|||++|++|||+.|-
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~-D~~tL~~y~I~~gstihLV~r~   93 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGIQPGSTVHVLRKS   93 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTCCTTCEEEEEESS
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEEECCeEEC-CCccHHHcCCCCCCEEEEEEeC
Confidence            45789999999999885  454 69999999999998 9999999999999999999863

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1e-05  Score=59.11  Aligned_cols=68  Identities=13%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhL  180 (333)
                      .|.|+..+|+.+.+.|.++.+...|...-++..|++  +...+++|+|+.+....|.+++++++|++|.+
T Consensus         3 ~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~--~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv   70 (72)
T d1wm3a_           3 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             EEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            456677789999999999999999999999999999  89999999999999999999999999999976

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2e-05  Score=57.48  Aligned_cols=68  Identities=12%  Similarity=0.326  Sum_probs=62.7

Q ss_pred             EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceee
Q 019968           34 ILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL  102 (333)
Q Consensus        34 M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~L  102 (333)
                      ++|.|. .+|+.+.+.|..+.++..|...-++..|++++..+++|+|+.|. .+.|..++++.+|++|.+
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~-~~~Tp~~l~med~D~Idv   70 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEE
Confidence            566664 57899999999999999999999999999999999999999998 889999999999999875

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.89  E-value=6.6e-06  Score=62.82  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=54.8

Q ss_pred             EEEEeCCeEEEEEec-CCCCHHHHHHHHHHhhCCCCcceEEEEC--------------CeecccCCccccccccccccce
Q 019968           36 IFLSVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFE--------------GRELARSNSRVRDYGLADGNVL  100 (333)
Q Consensus        36 I~Vt~~G~~~~i~V~-~sdTV~~LK~kI~~~~gip~~~Q~Lif~--------------G~~L~~D~~tL~dygI~~gstV  100 (333)
                      |.|+-...+..++|+ ++.||.+||.+|++..++|.+.|.|..+              -..|.+|..+|+++||.+|+.|
T Consensus         3 iRiRsrdG~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsiv   82 (94)
T d1wf9a1           3 LRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMV   82 (94)
T ss_dssp             EEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEE
T ss_pred             EEEEecCCceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEE
Confidence            444433346677775 4789999999999999999999999543              2236766778999999999999


Q ss_pred             eeeee
Q 019968          101 HLVLR  105 (333)
Q Consensus       101 ~Lv~r  105 (333)
                      +|...
T Consensus        83 yL~y~   87 (94)
T d1wf9a1          83 YLAYE   87 (94)
T ss_dssp             ECCCS
T ss_pred             EEEee
Confidence            98753

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.79  E-value=1.8e-05  Score=60.40  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=54.9

Q ss_pred             eeEeeeCCcEEEEEEec-CCchHHHHHHHHHhcCCCCCCCceEEEEC--------------Ceec-CCCCcccccCCCCC
Q 019968          112 ITVTTVCGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICD--------------GEEL-EDQRLITDICKRNE  175 (333)
Q Consensus       112 I~Vkt~~Gk~~~l~V~~-sdTV~~LK~~I~~~~Gip~~~~~QrLif~--------------Gk~L-eD~~tL~dy~I~~g  175 (333)
                      |-|++.+| +..++|+. +.|+.+||.+|++..++|  .++|.|..+              -..| +|..+|+.+||.+|
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VP--v~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hG   79 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   79 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCC--cccceeecChhhhccCCccccchhhhccCCccCHHHcCccCc
Confidence            45677776 46788864 789999999999999999  999999553              2335 45667999999999


Q ss_pred             CEEEEEee
Q 019968          176 AVIHLLVR  183 (333)
Q Consensus       176 svIhLv~r  183 (333)
                      +.++|...
T Consensus        80 sivyL~y~   87 (94)
T d1wf9a1          80 SMVYLAYE   87 (94)
T ss_dssp             CEEECCCS
T ss_pred             eEEEEEee
Confidence            99998543

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00057  Score=50.15  Aligned_cols=69  Identities=17%  Similarity=0.131  Sum_probs=63.4

Q ss_pred             EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEECCeecccCCccccccccccccceeeeee
Q 019968           36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        36 I~V-t~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~G~~L~~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      |.| ..+|+..++.|.|+.|+.++-...++++|+.+++..|.|+++.|+ -+..+.-.|+.+|+.+.|+..
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ld-Lsl~~R~sgLpnnakLELv~~   72 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPV   72 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECS
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcC-ccceeeecCCCCCCEEEEEEc
Confidence            344 578999999999999999999999999999999999999999998 889999999999999998753

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.0016  Score=47.68  Aligned_cols=70  Identities=11%  Similarity=0.020  Sum_probs=64.7

Q ss_pred             eeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEee
Q 019968          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       112 I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLif~Gk~LeD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      |.|-+.+|+..++.|.|+.++.++-+...+++|+.  +++..|.|+++.|+-+..++-.|+.+|+.+.|+-.
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~--~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~~   72 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   72 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCC--hhHceeeeCCEEcCccceeeecCCCCCCEEEEEEc
Confidence            56667899999999999999999999999999988  99999999999999999999999999999999743

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.028  Score=40.84  Aligned_cols=68  Identities=12%  Similarity=0.165  Sum_probs=56.4

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHL  180 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~L---eD~~tL~dy~I~~gsvIhL  180 (333)
                      ..|.||..+|+.+.-....++||..|..-|... +..  +....|+  |-.+.+   +.+.||.+.|+.+.++|++
T Consensus         6 ~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~--~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~v   78 (82)
T d1h8ca_           6 SKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL   78 (82)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCC--SSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCC--CCceEEEecCcccccccccccCCHHHCCCCCCCEEEE
Confidence            357789999999999999999999999999875 555  6677777  577888   3467999999999998886

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.049  Score=40.50  Aligned_cols=72  Identities=15%  Similarity=0.153  Sum_probs=56.1

Q ss_pred             ccceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeec--CCCCcccccCCCCCCEEEEEee
Q 019968          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL--EDQRLITDICKRNEAVIHLLVR  183 (333)
Q Consensus       109 ~m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~L--eD~~tL~dy~I~~gsvIhLv~r  183 (333)
                      ...|.||..+|+.+.-....++||.+|..-+..... .  ...-+|+  |-.+.+  +.+.||.+.|+.+.++|++--+
T Consensus        16 ~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~~-~--~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~~   91 (96)
T d2cr5a1          16 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGY-H--KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   91 (96)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTC-C--TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             eEEEEEECCCCCEEEEEECCcccHHHHHHHHHHhcc-C--cccceeecCCCceecCccCCCcHHHCCCCCCCEEEEecC
Confidence            456788888999888899999999999999977644 3  4566776  444666  3478999999999998887443

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.67  E-value=0.079  Score=39.00  Aligned_cols=65  Identities=15%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             ceeEeeeCCcEEEEEEecCCchHHHHHHHHHhc-CCCCCCCceEEEE--CCeec-CCCCcccccCCCCCCEE
Q 019968          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKG-REFVDLKNQELIC--DGEEL-EDQRLITDICKRNEAVI  178 (333)
Q Consensus       111 ~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~-Gip~~~~~QrLif--~Gk~L-eD~~tL~dy~I~~gsvI  178 (333)
                      .|.||..+|+.+......++||.+|..-+.... +..  ...-.|+.  -.+.+ +++.||.+.|+.+ ++|
T Consensus        16 ~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~--~~~f~L~t~~Prr~l~d~~~TL~e~gL~~-s~v   84 (89)
T d1i42a_          16 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMTTFPNKELADENQTLKEANLLN-AVI   84 (89)
T ss_dssp             EEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTS--SCCEEEEETTTTEECCCCSSCSGGGTTCC-SEE
T ss_pred             EEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCC--CCCEEEecCCCCcccCCCcCcHHHCCCcC-ceE
Confidence            577889999999999999999999999998764 444  56677875  46788 4578999999985 444

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.079  Score=38.27  Aligned_cols=72  Identities=21%  Similarity=0.245  Sum_probs=58.2

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc--cCCccccccccccccceeeee
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL  104 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~--~D~~tL~dygI~~gstV~Lv~  104 (333)
                      ...+|-|+ .+|+.+.-...+++||.+|..-|... +.+.....|+  |-.+.+.  +.+.||.+.|+.+.++|++-.
T Consensus         4 ~~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~   80 (82)
T d1h8ca_           4 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   80 (82)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEe
Confidence            34678887 57899999999999999999999874 7777777776  4567774  356799999999999987754

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.067  Score=39.74  Aligned_cols=81  Identities=19%  Similarity=0.263  Sum_probs=61.2

Q ss_pred             CCCCCCCCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEE--CCeecc-cCCccccccccccccce
Q 019968           25 RPEKLSNDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELA-RSNSRVRDYGLADGNVL  100 (333)
Q Consensus        25 ~~~~~~~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif--~G~~L~-~D~~tL~dygI~~gstV  100 (333)
                      +|........+|-|+ .+|+.+.-....++||.+|..-|... +.......|+.  -.+.+. +.+.||.++|+.+.++|
T Consensus         8 EP~~~~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L   86 (96)
T d2cr5a1           8 EPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVL   86 (96)
T ss_dssp             CCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEE
T ss_pred             CCCCCCCCeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEE
Confidence            444445667888897 58899999999999999999999765 44555666653  346664 34789999999999998


Q ss_pred             eeeeec
Q 019968          101 HLVLRL  106 (333)
Q Consensus       101 ~Lv~rl  106 (333)
                      ++..+-
T Consensus        87 ~v~~~d   92 (96)
T d2cr5a1          87 NVEEKE   92 (96)
T ss_dssp             EEEECC
T ss_pred             EEecCC
Confidence            876543

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.07  E-value=0.069  Score=39.36  Aligned_cols=67  Identities=18%  Similarity=0.239  Sum_probs=53.8

Q ss_pred             CcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhh-CCCCcceEEEEC--CeecccCCcccccccccccc
Q 019968           32 DSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYN-GFFVKKQKLVFE--GRELARSNSRVRDYGLADGN   98 (333)
Q Consensus        32 ~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~-gip~~~Q~Lif~--G~~L~~D~~tL~dygI~~gs   98 (333)
                      ....|-|+ .+|..+...+.+++||.+|...+.... +.......|+..  -+.|.+++.||.++|+.+.+
T Consensus        13 p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s~   83 (89)
T d1i42a_          13 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV   83 (89)
T ss_dssp             CCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCSE
T ss_pred             CcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCce
Confidence            35677786 588999999999999999999998763 556666777754  57888788999999998543

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.075  Score=41.60  Aligned_cols=69  Identities=10%  Similarity=0.084  Sum_probs=55.9

Q ss_pred             cceeEeeeCCcEEEEEEecCCchHHHHHHHHHhcCCCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEE
Q 019968          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLL  181 (333)
Q Consensus       110 m~I~Vkt~~Gk~~~l~V~~sdTV~~LK~~I~~~~Gip~~~~~QrLi--f~Gk~L---eD~~tL~dy~I~~gsvIhLv  181 (333)
                      ..|.||..+|+.+.-+...++||.+|...|.... ..  .....|+  |--+.|   +.+.||.+.|+.+.++|++-
T Consensus        44 ~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~~-~~--~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSKG-YP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHH-CC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcc-cC--CcceEEeecccccccccccccCcHHHcCCCCCCEEEEE
Confidence            5688899999999999999999999999998763 34  5666676  566777   34689999999999998763

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.46  Score=36.84  Aligned_cols=74  Identities=16%  Similarity=0.271  Sum_probs=58.0

Q ss_pred             CCcEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEE--ECCeecc--cCCccccccccccccceeeeee
Q 019968           31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVLR  105 (333)
Q Consensus        31 ~~~M~I~Vt-~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Li--f~G~~L~--~D~~tL~dygI~~gstV~Lv~r  105 (333)
                      ...-+|-|+ .+|+.+...+..++||.+|...|... +.......|+  |--+.|.  +.+.+|.+.|+.+.++|++.-.
T Consensus        41 ~p~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee~  119 (124)
T d1wj4a_          41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES  119 (124)
T ss_dssp             SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEec
Confidence            446788887 58899999999999999999999875 4555666665  4456663  3568999999999999877654

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.63  E-value=0.51  Score=35.13  Aligned_cols=74  Identities=14%  Similarity=0.148  Sum_probs=45.7

Q ss_pred             CCcEEEEEEeCC---------eEEEEEec---CCCCHHHHHHHHHHhhCCCCcc-----------eEEEECCeecccCCc
Q 019968           31 NDSILIFLSVGG---------SVIPMRVM---ESDSIASVKLRIQSYNGFFVKK-----------QKLVFEGRELARSNS   87 (333)
Q Consensus        31 ~~~M~I~Vt~~G---------~~~~i~V~---~sdTV~~LK~kI~~~~gip~~~-----------Q~Lif~G~~L~~D~~   87 (333)
                      ...|+|.|.+.|         +.+.+++.   ...||.+|-..+.+...-....           -.++.+|+...    
T Consensus         2 ~~~m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~----   77 (101)
T d1xo3a_           2 AAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE----   77 (101)
T ss_dssp             CSSCEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHH----
T ss_pred             CCCeEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCccee----
Confidence            347888887544         55566664   3579999999998875432211           12333443322    


Q ss_pred             cc--cccccccccceeeeeeccc
Q 019968           88 RV--RDYGLADGNVLHLVLRLSD  108 (333)
Q Consensus        88 tL--~dygI~~gstV~Lv~rlsd  108 (333)
                      .+  .++.|++|+.|.++....+
T Consensus        78 ~l~gl~t~l~dgDeV~~~p~v~G  100 (101)
T d1xo3a_          78 LLGELDYQLQDQDSILFISTLHG  100 (101)
T ss_dssp             HHTTTSCCCCTTCEEEEEETTCC
T ss_pred             ccCCCccCcCCCCEEEEeCCCCC
Confidence            11  3678999999988765543

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.54  E-value=1.2  Score=31.77  Aligned_cols=66  Identities=18%  Similarity=0.238  Sum_probs=43.9

Q ss_pred             cEEEEEEe--------CCeEEEEEecCCCCHHHHHHHHHHhhCCC-----------CcceEEEECCeecccCCccccccc
Q 019968           33 SILIFLSV--------GGSVIPMRVMESDSIASVKLRIQSYNGFF-----------VKKQKLVFEGRELARSNSRVRDYG   93 (333)
Q Consensus        33 ~M~I~Vt~--------~G~~~~i~V~~sdTV~~LK~kI~~~~gip-----------~~~Q~Lif~G~~L~~D~~tL~dyg   93 (333)
                      +|+|.|++        +.....+++..+.||.+|...+.++..-.           ...-++..+|+... +     ++-
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~-~-----d~~   74 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W-----DEE   74 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----TCB
T ss_pred             CeEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcC-C-----CcC
Confidence            58888852        34678899999999999999998864311           11223445555543 3     456


Q ss_pred             cccccceeeee
Q 019968           94 LADGNVLHLVL  104 (333)
Q Consensus        94 I~~gstV~Lv~  104 (333)
                      +++|+.|-+..
T Consensus        75 L~~gDevai~P   85 (88)
T d1vjka_          75 LKDGDVVGVFP   85 (88)
T ss_dssp             CCTTCEEEEES
T ss_pred             cCCCCEEEEeC
Confidence            77888876654

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.09  E-value=2.3  Score=30.52  Aligned_cols=47  Identities=9%  Similarity=0.024  Sum_probs=39.9

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCCcceEEEEC
Q 019968           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE   78 (333)
Q Consensus        30 ~~~~M~I~Vt~~G~~~~i~V~~sdTV~~LK~kI~~~~gip~~~Q~Lif~   78 (333)
                      +..+++|.+.+.+..+.+.+.++.|..+|+.+|+.+++..  ..+|.|.
T Consensus         9 ~~~~ikVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY~   55 (85)
T d1ip9a_           9 GLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTK   55 (85)
T ss_dssp             CCCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEEC
T ss_pred             CCCCEEEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhCCC--ceEEEEE
Confidence            4667888888999999999999999999999999998754  4566664