Citrus Sinensis ID: 019971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRKFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNVEDKSLSTSNKLKPKKQLNKKSAKKGSSKKGKAK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccccccccccHHHHHHHHHccccccccccEEEccccccEEccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccHHEcccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccEEEccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHccHHHHHHHHHHHHHHccccccccccccccccccccccEcccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MESQNQYEVDLgnllafnhshhfpslpssrEELVKECLEEGTKLVQAIADRLfnlpstedvdgpivtlpppttklprskhlpkpkpptkwELFAKKkgikkrkkdKVVWDeqtgtwkrrfgydrvdddrdvpiieakmtdepgedpfaKRQEEKKKRVAKQDKNRLQNLKQAakvgalpsHVQLAAtalpitgtqaapkkftkhelgdvagiaatstasggkfdkkvpgekapkhqgkhrkflpvvegsgigsrekeQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHnknvedkslstsnklkpkkqlnkksakkgsskkgkak
Flexible Loop (DISEMBL)
MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFnlpstedvdgpivtlpppttklprskhlpkpkpptkwelfakkkgikkrkkdkvvwdeqtgtwkrrfgydrvdddrdvpiieakmtdepgedpfakrqeekKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAATALPITGTQAAPKKFTKHELGDVAGIaatstasggkfdKKVPgekapkhqgkhrkflpvvegsgigsrekeqTDKVLNKLFskhsheilnvekavtaynvkrekkqrlkhnknvedkslstsnklkpkkqlnkksakkgsskkgkak
Low Complexity Region (SEG)
MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAkkkgikkrkkdkVVWDEQTGTWKRRFGYdrvdddrdvPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAATALPITGTQAAPKKFTKHELGDVagiaatstasggKFDKKVPGEKAPKHQGKHRKFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNVEDKSLSTsnklkpkkqlnkksakkgsskkgkak
Disordered region (IsUnstruct)
*********DLGNLLAFNHS************LVKECLEEGTKLVQAIADRLFNLP***********************************LF**********KDKVVWDEQTGTWKRRFGYDRVDDDR*V*************************************************HVQLAATALPITG************************************************************************LFSKHSHEILNVEKAVTAYN************************************************
Disordered Region (DISOPRED)
*ESQNQYEVDLGNLLAFNHSHHFPS*********KECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPR*****************************VVWDEQTGTWKRRFGYDRVDDDRDVPIIEAKMTDE***************************************************************************TA*******************************************************************************************************************
Disordered Region (DISEMBL)
********VDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKK************WDEQTGTWKRRFGYDRVDDDRDVPIIEAKMTDEPGEDPFA**************KNRLQNLKQAAKVGALPSHVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKK************HRKFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKRE********************************************
Disordered Region (DISPRO)
***QNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKV**********************************AG*************KKVP*********KHRKFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKRE********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVDDDRDVPIIEAKMTDEPGEDPFAxxxxxxxxxxxxxxxxxxxxxxxxAKVGALPSHVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRKFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNVEDKSLSTSNKLKPKKQLNKKSAKKGSSKKGKAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
Q9SH88	318	Ribosome biogenesis regul	yes	no	0.939	0.984	0.707	1e-126
Q2KIH4	365	Ribosome biogenesis regul	yes	no	0.666	0.608	0.400	3e-41
Q9CYH6	365	Ribosome biogenesis regul	yes	no	0.762	0.695	0.393	4e-41
A1A5P2	365	Ribosome biogenesis regul	yes	no	0.762	0.695	0.393	1e-40
Q15050	365	Ribosome biogenesis regul	yes	no	0.765	0.698	0.409	2e-40
Q9XVT0	333	Ribosome biogenesis regul	yes	no	0.792	0.792	0.372	4e-33
A8WY26	329	Ribosome biogenesis regul	N/A	no	0.732	0.741	0.369	3e-31
Q869Q2	317	Ribosome biogenesis regul	yes	no	0.813	0.854	0.346	4e-29
Q08746	203	Regulator of ribosome bio	yes	no	0.480	0.788	0.375	8e-18
O59678	166	Ribosome biogenesis regul	yes	no	0.360	0.722	0.379	4e-14

>sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/325 (70%), Positives = 262/325 (80%), Gaps = 12/325 (3%)

Query: 1   MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           ME++  Y+VD+GNLLAFN +H FPS PSSR ELVKE L EGTKLVQ IA++LFN PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
            DGPIV LPPPTTKLPR KH+P+PKPPTKWE FA KKGI+KRKK+KVVWDEQT  +KRR 
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GYDRV+DD DVPIIEAK +DEPG DPFAKR ++KKKRV KQ+KNRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
           HVQLAAT+LPI+GT+A PKK  K ELGDVAG+AATSTASGGKFDKK+PGEK PK QGKH 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
           K+LPVV G G  + EKEQT+ VL+K+FSKHSHEILNV KA+  YNVK+EKK+        
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKS------- 297

Query: 301 EDKSLSTSNKLKPKKQLNKKSAKKG 325
                  S+KLKPKK + KK A K 
Sbjct: 298 -----GRSDKLKPKKDITKKPANKA 317

Involved in ribosome biogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2KIH4|RRS1_BOVIN Ribosome biogenesis regulatory protein homolog OS=Bos taurus GN=RRS1 PE=2 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/247 (40%), Positives = 144/247 (58%), Gaps = 25/247 (10%)

Query: 6   QYEVDLGNLLAFNHS------HHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTE 59
           + E DLGNLLA + +      H  P+  +    L ++         Q + ++L+ LP+  
Sbjct: 31  ELEFDLGNLLASDRNPPTGLRHAGPTQEAELRALARDN-------TQLLINQLWQLPTER 83

Query: 60  DVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRR 119
             +  +  LP P+T+LPR K +P+P+P T+W+ FA+ KGI+ +KK  +VWDE +G W+RR
Sbjct: 84  VEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRR 143

Query: 120 FGYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALP 179
           +GY R  DD    +IE     +P ED FAKR + KK+RVAK + NRL+NL +A K+  LP
Sbjct: 144 WGYQRARDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLP 202

Query: 180 SHVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKH 239
           S     A  +  TG Q      +K ELG    +A  STAS G+F +++P EKAP+  GK 
Sbjct: 203 S-----AAGMHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKK 251

Query: 240 RKFLPVV 246
           RKF P+ 
Sbjct: 252 RKFQPLF 258

Involved in ribosome biogenesis.

Bos taurus (taxid: 9913)

>sp|Q9CYH6|RRS1_MOUSE Ribosome biogenesis regulatory protein homolog OS=Mus musculus GN=Rrs1 PE=2 SV=1

 Score =  168 bits (426), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/282 (39%), Positives = 164/282 (58%), Gaps = 28/282 (9%)

Query: 6   QYEVDLGNLLAFNHSHHFPSL-----PSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           + E DLGNLLA + +   P++     PS   EL +    + T+L   + ++L+ LP+   
Sbjct: 31  ELEFDLGNLLASDRNP--PTVLRQAGPSPEAEL-RALARDNTQL---LINQLWRLPTERV 84

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
            +  +  LP P T+LPR K LP+P+P T+W+ FA+ KGI+ +KK  +VWDE +G W+RR+
Sbjct: 85  EEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRW 144

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GY R  DD    +IE   + +P ED FAKR + KK+RVAK + NRL+NL +A K+  +PS
Sbjct: 145 GYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM-QMPS 203

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
                +  L  TG Q      +K ELG    +A  STAS G+F +++P EKAP+  GK R
Sbjct: 204 -----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKR 252

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVT 282
           KF P+    G  + EK+   ++L  + SK     L+V +A  
Sbjct: 253 KFQPLF---GDFAAEKKNQLELLRVMNSKKPR--LDVTRATN 289

Involved in ribosome biogenesis.

Mus musculus (taxid: 10090)

>sp|A1A5P2|RRS1_RAT Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus GN=Rrs1 PE=2 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 28/282 (9%)

Query: 6   QYEVDLGNLLAFNHSHHFPSL-----PSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           + E DLGNLLA + +   P++     PS   EL +    + T+L   + ++L+ LP+   
Sbjct: 31  ELEFDLGNLLASDRNP--PTVLRQAGPSPEAEL-RALARDNTQL---LVNQLWQLPTERV 84

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
            +  +  LP P T+LPR K LP+P+P T+W+ FA+ KGI+ +KK  +VWDE +G W+RR+
Sbjct: 85  EEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRW 144

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GY R  DD    +IE   + +P ED FAKR   KK+RVAK + NRL+NL +A K+  +PS
Sbjct: 145 GYKRARDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM-QMPS 203

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
                +  L  TG Q      +K ELG    +A  STAS G+F +++P EKAP+  GK R
Sbjct: 204 -----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKR 252

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVT 282
           KF P+    G  + EK+   ++L  + SK     L+V +A  
Sbjct: 253 KFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN 289

Involved in ribosome biogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q15050|RRS1_HUMAN Ribosome biogenesis regulatory protein homolog OS=Homo sapiens GN=RRS1 PE=1 SV=2

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/281 (40%), Positives = 164/281 (58%), Gaps = 26/281 (9%)

Query: 6   QYEVDLGNLLAFNH---SHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVD 62
           + + DLGNLLA +    +    + P+   EL +    + T+L   + ++L+ LP TE V+
Sbjct: 31  ELQFDLGNLLASDRNPPTGLRCAGPTPEAEL-QALARDNTQL---LINQLWQLP-TERVE 85

Query: 63  GPIVT-LPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFG 121
             IV  LP PTT+LPR K LP+P+P T+W+ FA+ KGI+ +KK  +VWDE +G W+RR+G
Sbjct: 86  EAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWG 145

Query: 122 YDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSH 181
           Y R  DD    +IE     +P ED FAKR + KK+RVAK + NRL+NL +A K+  LPS 
Sbjct: 146 YQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS- 203

Query: 182 VQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRK 241
               A  L  TG Q      +K ELG    +A  STAS G+F +++P EK P+  GK RK
Sbjct: 204 ----AAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRK 253

Query: 242 FLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVT 282
           F P+    G  + EK+   ++L  + SK     L+V +A  
Sbjct: 254 FQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN 289

Involved in ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q9XVT0|RRS1_CAEEL Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis elegans GN=rrbs-1 PE=3 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/290 (37%), Positives = 155/290 (53%), Gaps = 26/290 (8%)

Query: 9   VDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTL 68
           +DLGNLL  +     P    + E L     E   K  Q + + ++ L      +  IVTL
Sbjct: 16  IDLGNLLFIDRE---PIQGDASEGLE----ERARKNTQLLFNNIWQLEQKRVEEAIIVTL 68

Query: 69  PPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVDDD 128
           PP T +LPR K LP+ K PTKWE +A +KGI+KRKKDK V+DE T  WK  +GY R +DD
Sbjct: 69  PPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKPTYGYRRGNDD 128

Query: 129 RDVPIIEA-KMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAAT 187
               +IE     ++P +D FA+R+E+KK+RVAK D  R++NL +  K     + V+   +
Sbjct: 129 TKDWLIEIPDNAEDPNKDFFAERREKKKERVAKNDMQRMKNLARQMK-----TTVKSGPS 183

Query: 188 ALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRKF----L 243
              + G     K+ +K ++      A  +TAS GKF + + GEKA    GK RKF     
Sbjct: 184 TEKMIGVGVDAKEKSKQQVRFAVDRAKLATASAGKFQEGLKGEKANVKTGKKRKFEANEA 243

Query: 244 PVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQR 293
           PV       S EKE+  ++L ++ SK +   +  EKA       REKK++
Sbjct: 244 PV-------SGEKERALQILQRMKSKKAK--IVEEKAAAVAGPLREKKEK 284

Involved in ribosome biogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|A8WY26|RRS1_CAEBR Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis briggsae GN=rrbs-1 PE=3 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 147/268 (54%), Gaps = 24/268 (8%)

Query: 9   VDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTL 68
           +DLGNLL  +       L    EE ++E   + T+L   + + ++ L      +  IVTL
Sbjct: 16  IDLGNLLFIDRE----PLQGDAEEGLEERARKNTQL---LFNNIWQLEQKRVEEAIIVTL 68

Query: 69  PPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVDDD 128
           P  T +LPR K LP+ K PTKWE +AK+KGI+KRKKDK V+DE T  WK  +GY R +D+
Sbjct: 69  PAATYRLPREKKLPEKKEPTKWEKYAKEKGIEKRKKDKKVFDEATKEWKPTYGYRRGNDN 128

Query: 129 RDVPIIEA-KMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAAT 187
               +IE     ++P +D FA+R+E+KK+RVAK +  R++NL +  K     + V+   +
Sbjct: 129 TKDWLIEIPDNAEDPNKDFFAERREKKKERVAKNEMQRMKNLARQMK-----TTVKTGPS 183

Query: 188 ALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRKF----L 243
              + G     K  +K ++      A  +TAS GKF + + GEKA    GK RKF     
Sbjct: 184 TDKMIGVGIDAKDKSKQDVRFAVDRAKLATASAGKFQEGLKGEKANIKTGKKRKFESNEA 243

Query: 244 PVVEGSGIGSREKEQTDKVLNKLFSKHS 271
           PV       S EKE+  ++L ++ SK +
Sbjct: 244 PV-------SAEKERALQILQRMKSKKA 264

Involved in ribosome biogenesis.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q869Q2|RRS1_DICDI Ribosome biogenesis regulatory protein homolog OS=Dictyostelium discoideum GN=rrs1 PE=3 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 162/297 (54%), Gaps = 26/297 (8%)

Query: 1   MESQNQYEVDLGNLLAFNHSH----HFPSLPSSREELVKECLEEGTKLVQAIADRLFNLP 56
           ++ ++    DLGNL AF+HS      + S P+   E + +   +    VQ +  RLF LP
Sbjct: 21  IDGEDTLLYDLGNLTAFDHSSLNKTEYKSNPN---EYINKLSRDN---VQLLISRLFQLP 74

Query: 57  STEDVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTW 116
             E  +G +  LP  TT +PR + LP  KP T+WE FA+ KGIKK+KK  + WD++   +
Sbjct: 75  IKEIEEGSLALLPRCTTPIPRERSLPTSKPKTRWEAFAEIKGIKKKKKSSMEWDKEHEEY 134

Query: 117 KRRFGYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVG 176
           +  FGY + +D  +   + A+  D+ GEDPF K ++EK  RV+KQ K   +N  +A    
Sbjct: 135 RPTFGYKKANDVANDWAMLARPDDKVGEDPFKKLEDEKNDRVSKQKKREQRNFDEA---- 190

Query: 177 ALPSHVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEK-APKH 235
              S  Q++     ++  +    +  K ++  V  +A  STAS GKFDK+V  EK APK 
Sbjct: 191 ---SMRQMSNVGKTLSFDKEHRGQI-KSDMEKVFDVAKLSTASLGKFDKRVENEKDAPKR 246

Query: 236 QGKHRKFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQ 292
             K    L    G+G  ++E E   K+++++F K +  +LNV+KA   + VK E+++
Sbjct: 247 GKKKLAGL----GAGDVAQESENNSKLIDRMFKKEN--VLNVDKATRQF-VKAEERE 296

Involved in ribosome biogenesis.

Dictyostelium discoideum (taxid: 44689)

>sp|Q08746|RRS1_YEAST Regulator of ribosome biosynthesis OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRS1 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 24/184 (13%)

Query: 10  DLGNLLAFNHS----HHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLP---STEDVD 62
           DLGNL AF+ +    +   S  + REE +K    +    VQ + ++L +LP   +TE V 
Sbjct: 22  DLGNLAAFDSNVLDKNDLDSSNARREEKIKSLTRDN---VQLLINQLLSLPMKTTTESVG 78

Query: 63  GP--------IVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIK-KRKKDKVVWDEQT 113
           G         ++ LP PTT LPR K LPK K  TKWE FA KKGIK K +  K+++DE +
Sbjct: 79  GTGGQSSVMTLLQLPDPTTDLPREKPLPKAKAMTKWEKFAAKKGIKPKERAGKMIYDEAS 138

Query: 114 GTWKRRFGY----DRVDDDRDVPIIE-AKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQN 168
           G W  ++GY     ++DD   V + +  K TD    DP    + E+K+ V K +K + +N
Sbjct: 139 GEWVPKWGYKGANKKLDDQWLVEVDDKVKGTDNELIDPRTLNRAERKRLVKKNEKQQRRN 198

Query: 169 LKQA 172
           +K A
Sbjct: 199 MKNA 202

Required for ribosome biogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59678|RRS1_SCHPO Ribosome biogenesis regulatory protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.16 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 4/124 (3%)

Query: 1   MESQNQYEVDLGNLLAFNHSHHFPS-LPSSREELVKECLEEGTKLVQAIADRLFNLPSTE 59
           +E+    + DLGN+ AF+ S    + L  S +E     L      VQ + +++ +LP   
Sbjct: 5   IENSIPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDN--VQQLVNKMISLPKER 62

Query: 60  DVDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKD-KVVWDEQTGTWKR 118
             DG ++ LP   T LPR+K LPKPKP TKW+ FA+ KGI  +K++ ++V+DE +G W  
Sbjct: 63  TSDGVLLQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWVP 122

Query: 119 RFGY 122
           ++GY
Sbjct: 123 KWGY 126

Involved in ribosome biogenesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
297823677	324	ribosome biogenesis regulatory protein f	0.957	0.984	0.716	1e-128
225453598	327	PREDICTED: ribosome biogenesis regulator	0.897	0.914	0.769	1e-128
225454487	331	PREDICTED: ribosome biogenesis regulator	0.909	0.915	0.745	1e-127
297745415	328	unnamed protein product [Vitis vinifera]	0.909	0.923	0.745	1e-126
18404610	318	ribosome biogenesis regulatory protein-l	0.939	0.984	0.707	1e-125
21593609	318	unknown [Arabidopsis thaliana]	0.939	0.984	0.704	1e-124
224082902	298	predicted protein [Populus trichocarpa]	0.876	0.979	0.770	1e-123
147832302	327	hypothetical protein VITISV_033191 [Viti	0.906	0.923	0.739	1e-123
449462587	329	PREDICTED: ribosome biogenesis regulator	0.981	0.993	0.747	1e-123
356563022	331	PREDICTED: ribosome biogenesis regulator	0.975	0.981	0.720	1e-121

>gi|297823677|ref|XP_002879721.1| ribosome biogenesis regulatory protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297325560|gb|EFH55980.1| ribosome biogenesis regulatory protein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/325 (71%), Positives = 268/325 (82%), Gaps = 6/325 (1%)

Query: 1   MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           ME++  Y+VD+GNLLAFN +H FPS PSSREELV EC+ EGTKLVQAIA+ LFN PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSREELVNECIREGTKLVQAIANTLFNFPSTET 64

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
            DGPIV LPPPTTKLPR KH+P+PKPPTKWE FA KKGI+KRKKDK+V+DEQT  +KRR 
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKDKLVYDEQTDQFKRRH 124

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GYDRV+DD DVPIIEAK TDEPG DPFAKR ++KKKRV KQ+KNRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKATDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
           HVQLAAT+LPI+GT+A PKK  K ELGDVAG+AATSTASGGKFDKK+PGEK PK QGKH 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
           K+LPVV G G  + EKEQT+ VL+K+FSKHSHEILNV KA+  YNVK+EKK+  + +K+ 
Sbjct: 245 KYLPVVAGRGDANAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKSGRSDKS- 303

Query: 301 EDKSLSTSNKLKPKKQLNKKSAKKG 325
                  S+KLKPKK + KKSA K 
Sbjct: 304 -----GRSDKLKPKKDITKKSANKA 323

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453598|ref|XP_002264648.1| PREDICTED: ribosome biogenesis regulatory protein homolog [Vitis vinifera] gi|296088996|emb|CBI38699.3| unnamed protein product [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/304 (76%), Positives = 271/304 (89%), Gaps = 5/304 (1%)

Query: 6   QYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPI 65
           ++++DLG+LLAF+  HHFPS PSSREELVKECL++GT+LVQ+IAD LFNLPSTED+DGP+
Sbjct: 5   EHQIDLGHLLAFDPLHHFPSPPSSREELVKECLQKGTELVQSIADTLFNLPSTEDIDGPL 64

Query: 66  VTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRV 125
           V LPPPTT+LPR KHLPKPKPPTKWELFAK KGIK RKKDK+V+DEQTGTWKRR GYDRV
Sbjct: 65  VKLPPPTTRLPREKHLPKPKPPTKWELFAKAKGIKNRKKDKIVYDEQTGTWKRRHGYDRV 124

Query: 126 DDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLA 185
           +DD D+PIIEAKMTDE GEDPFAKR+ EKKKRV KQ KNRLQNLKQAAKVGALPSH+QLA
Sbjct: 125 NDDEDIPIIEAKMTDEAGEDPFAKRRAEKKKRVEKQGKNRLQNLKQAAKVGALPSHIQLA 184

Query: 186 ATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRKFLPV 245
           ATALPITGTQ APKK +K+EL DVA +AAT+TASGGKFDKK+PGEK  KH+GK+RKFLPV
Sbjct: 185 ATALPITGTQTAPKKVSKNELEDVASMAATATASGGKFDKKLPGEKPEKHKGKYRKFLPV 244

Query: 246 VEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNVEDKSL 305
           VEG+GIGS EK+QT+K+LNKL SK+SHEILNV+KA+  YNVK+EKK+     KN + K  
Sbjct: 245 VEGTGIGSLEKQQTEKILNKLISKNSHEILNVDKAINMYNVKKEKKR-----KNRQGKDS 299

Query: 306 STSN 309
           STS+
Sbjct: 300 STSS 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454487|ref|XP_002281065.1| PREDICTED: ribosome biogenesis regulatory protein homolog [Vitis vinifera]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/307 (74%), Positives = 273/307 (88%), Gaps = 4/307 (1%)

Query: 1   MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           M++Q ++++DLG+L+AF+  HHFPS P+SREELVKECL++GT LVQ IAD LFNLPSTED
Sbjct: 4   MDTQ-EHQIDLGHLMAFDPLHHFPSPPTSREELVKECLQKGTVLVQLIADALFNLPSTED 62

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
           +DGP+V LPPP T+LPR KHLPKPKPPTKWELFAK KGIK RKKDK+V+DEQTGTWKRR 
Sbjct: 63  IDGPLVKLPPPMTRLPREKHLPKPKPPTKWELFAKAKGIKNRKKDKIVYDEQTGTWKRRH 122

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GYDRV+DD+D+PIIEAKMTDEPGEDPF KRQ EKKKRV K +KNRLQNLKQAAKVGALPS
Sbjct: 123 GYDRVNDDKDIPIIEAKMTDEPGEDPFVKRQAEKKKRVEKHEKNRLQNLKQAAKVGALPS 182

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
           H+QLAATALPITGTQAAPKK +K+EL D+A +AA +TASGGKFDKK+ GEK  KH+GK+R
Sbjct: 183 HIQLAATALPITGTQAAPKKASKNELQDIASMAAAATASGGKFDKKLVGEKPEKHKGKYR 242

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
           KFLPVVEG+GIGS+EK+QT+KVLN+L SK+SHEILNV+KA+  YNVK+EKK++   N+  
Sbjct: 243 KFLPVVEGTGIGSQEKQQTEKVLNRLISKNSHEILNVDKAINMYNVKKEKKRK---NQRG 299

Query: 301 EDKSLST 307
           +D S S+
Sbjct: 300 KDSSTSS 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745415|emb|CBI40495.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/307 (74%), Positives = 273/307 (88%), Gaps = 4/307 (1%)

Query: 1   MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           M++Q ++++DLG+L+AF+  HHFPS P+SREELVKECL++GT LVQ IAD LFNLPSTED
Sbjct: 1   MDTQ-EHQIDLGHLMAFDPLHHFPSPPTSREELVKECLQKGTVLVQLIADALFNLPSTED 59

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
           +DGP+V LPPP T+LPR KHLPKPKPPTKWELFAK KGIK RKKDK+V+DEQTGTWKRR 
Sbjct: 60  IDGPLVKLPPPMTRLPREKHLPKPKPPTKWELFAKAKGIKNRKKDKIVYDEQTGTWKRRH 119

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GYDRV+DD+D+PIIEAKMTDEPGEDPF KRQ EKKKRV K +KNRLQNLKQAAKVGALPS
Sbjct: 120 GYDRVNDDKDIPIIEAKMTDEPGEDPFVKRQAEKKKRVEKHEKNRLQNLKQAAKVGALPS 179

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
           H+QLAATALPITGTQAAPKK +K+EL D+A +AA +TASGGKFDKK+ GEK  KH+GK+R
Sbjct: 180 HIQLAATALPITGTQAAPKKASKNELQDIASMAAAATASGGKFDKKLVGEKPEKHKGKYR 239

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
           KFLPVVEG+GIGS+EK+QT+KVLN+L SK+SHEILNV+KA+  YNVK+EKK++   N+  
Sbjct: 240 KFLPVVEGTGIGSQEKQQTEKVLNRLISKNSHEILNVDKAINMYNVKKEKKRK---NQRG 296

Query: 301 EDKSLST 307
           +D S S+
Sbjct: 297 KDSSTSS 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404610|ref|NP_565878.1| ribosome biogenesis regulatory protein-like protein [Arabidopsis thaliana] gi|83305639|sp|Q9SH88.2|RRS1_ARATH RecName: Full=Ribosome biogenesis regulatory protein homolog gi|110740729|dbj|BAE98464.1| hypothetical protein [Arabidopsis thaliana] gi|330254381|gb|AEC09475.1| ribosome biogenesis regulatory protein-like protein [Arabidopsis thaliana]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/325 (70%), Positives = 262/325 (80%), Gaps = 12/325 (3%)

Query: 1   MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           ME++  Y+VD+GNLLAFN +H FPS PSSR ELVKE L EGTKLVQ IA++LFN PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
            DGPIV LPPPTTKLPR KH+P+PKPPTKWE FA KKGI+KRKK+KVVWDEQT  +KRR 
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GYDRV+DD DVPIIEAK +DEPG DPFAKR ++KKKRV KQ+KNRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
           HVQLAAT+LPI+GT+A PKK  K ELGDVAG+AATSTASGGKFDKK+PGEK PK QGKH 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
           K+LPVV G G  + EKEQT+ VL+K+FSKHSHEILNV KA+  YNVK+EKK+        
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKS------- 297

Query: 301 EDKSLSTSNKLKPKKQLNKKSAKKG 325
                  S+KLKPKK + KK A K 
Sbjct: 298 -----GRSDKLKPKKDITKKPANKA 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593609|gb|AAM65576.1| unknown [Arabidopsis thaliana]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/325 (70%), Positives = 261/325 (80%), Gaps = 12/325 (3%)

Query: 1   MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           ME++  Y+VD+GNLLAFN +H F S PSSR ELVKE L EGTKLVQ IA++LFN PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFSSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
            DGPIV LPPPTTKLPR KH+P+PKPPTKWE FA KKGI+KRKK+KVVWDEQT  +KRR 
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GYDRV+DD DVPIIEAK +DEPG DPFAKR ++KKKRV KQ+KNRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
           HVQLAAT+LPI+GT+A PKK  K ELGDVAG+AATSTASGGKFDKK+PGEK PK QGKH 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
           K+LPVV G G  + EKEQT+ VL+K+FSKHSHEILNV KA+  YNVK+EKK+        
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKS------- 297

Query: 301 EDKSLSTSNKLKPKKQLNKKSAKKG 325
                  S+KLKPKK + KK A K 
Sbjct: 298 -----GRSDKLKPKKDITKKPANKA 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082902|ref|XP_002306885.1| predicted protein [Populus trichocarpa] gi|222856334|gb|EEE93881.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/292 (77%), Positives = 256/292 (87%)

Query: 7   YEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIV 66
           Y+VDLGNL+AF+  HHF S+PS+R ELV ECL  GT+LVQAI   +FNLPSTED+DGP+V
Sbjct: 1   YQVDLGNLMAFDPFHHFTSIPSARSELVAECLSNGTELVQAIVSGVFNLPSTEDIDGPLV 60

Query: 67  TLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVD 126
            LPPPTTKLPR K LPKPKPPT+WE FAK KGI+ RKKDKVVWDEQTGTWKRR+GYDRV+
Sbjct: 61  KLPPPTTKLPREKPLPKPKPPTRWEQFAKAKGIRNRKKDKVVWDEQTGTWKRRYGYDRVN 120

Query: 127 DDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAA 186
           DD DVPIIEAKMTDEPG DPFAKR  EKK+RV K  KN+LQNLK AAK GALPSHVQLAA
Sbjct: 121 DDADVPIIEAKMTDEPGVDPFAKRVAEKKERVQKNQKNQLQNLKTAAKAGALPSHVQLAA 180

Query: 187 TALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRKFLPVV 246
           TALPITGTQAA KKFTK ELG+VAG+A+T+TASGGKFDKK+ GEK  K+QGKHRKFLPVV
Sbjct: 181 TALPITGTQAAKKKFTKDELGNVAGLASTATASGGKFDKKLRGEKPVKNQGKHRKFLPVV 240

Query: 247 EGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNK 298
           EGSGIGS+EKEQTD+VL+KL S +SHEILNV+KAVT YNV +E+K+R ++ K
Sbjct: 241 EGSGIGSQEKEQTDRVLSKLISSNSHEILNVDKAVTMYNVNKERKRRNQYGK 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832302|emb|CAN77790.1| hypothetical protein VITISV_033191 [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/307 (73%), Positives = 271/307 (88%), Gaps = 5/307 (1%)

Query: 1   MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           M++Q ++++DLG+L+AF+  HHFPS P+SREELVKECL++GT LVQ IAD LFNLPSTED
Sbjct: 1   MDTQ-EHQIDLGHLMAFDPLHHFPSPPTSREELVKECLQKGTVLVQLIADALFNLPSTED 59

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
           +DGP+V LPPP T+LPR KHLPKPKPPTKWELFAK KGIK RKKDK+V+DEQTGTWKRR 
Sbjct: 60  IDGPLVKLPPPMTRLPREKHLPKPKPPTKWELFAKAKGIKNRKKDKIVYDEQTGTWKRRH 119

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GYDRV+DD+D+PIIEAKMTD  GEDPF KRQ EKKKRV K +KNRLQNLKQAAKVGALPS
Sbjct: 120 GYDRVNDDKDJPIIEAKMTDA-GEDPFXKRQAEKKKRVEKHEKNRLQNLKQAAKVGALPS 178

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
           H+QLAATALPITGTQAAPKK +K+EL D+A +AA +TASGGKFDKK+ GEK  KH+GK+R
Sbjct: 179 HIQLAATALPITGTQAAPKKASKNELQDIASMAAAATASGGKFDKKLVGEKPEKHKGKYR 238

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
           KFLPVVEG+GIGS+EK+QT+KVLN+L SK+SHEILNV+KA+  YNVK+EKK++   N+  
Sbjct: 239 KFLPVVEGTGIGSQEKQQTEKVLNRLISKNSHEILNVDKAINMYNVKKEKKRK---NQRG 295

Query: 301 EDKSLST 307
           +D S S+
Sbjct: 296 KDSSTSS 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462587|ref|XP_004149022.1| PREDICTED: ribosome biogenesis regulatory protein homolog [Cucumis sativus] gi|449476004|ref|XP_004154612.1| PREDICTED: ribosome biogenesis regulatory protein homolog [Cucumis sativus]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/333 (74%), Positives = 289/333 (86%), Gaps = 6/333 (1%)

Query: 1   MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           +E+Q+ +++DLG+L+AFN  H FPSLPSSRE+LV ECL++GT+LVQ+IA+ LFNLPSTED
Sbjct: 3   IENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPSTED 62

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
            DGP+V LPPPTT+LPR K LPKPKPPTKWELFA+KKGIK RKKDK V+DEQT TWKRR 
Sbjct: 63  RDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKRRH 122

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GYDR +D+ ++PIIEAKMTDE GEDPFA R+ +KKKRV KQ+KNRLQNLKQAAKVGALPS
Sbjct: 123 GYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGALPS 182

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
           H+QLAATALPITGTQAAPKK TK ELG+VAG+AATSTASGGKFDKK  GEK  KHQGK+R
Sbjct: 183 HIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGKYR 242

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
           KFLPVVEG+GIGSRE+EQT+KVL++L SK+SHEILNV KAV  YNVK+EKKQR       
Sbjct: 243 KFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQR------N 296

Query: 301 EDKSLSTSNKLKPKKQLNKKSAKKGSSKKGKAK 333
           + KS S S+KLKP K+L KK  KKGSSK+GKAK
Sbjct: 297 QGKSSSMSSKLKPNKKLQKKPLKKGSSKQGKAK 329

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563022|ref|XP_003549765.1| PREDICTED: ribosome biogenesis regulatory protein homolog [Glycine max]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/333 (72%), Positives = 281/333 (84%), Gaps = 8/333 (2%)

Query: 2   ESQNQYEVDLGNLLAFNHSHHFPSLPS-SREELVKECLEEGTKLVQAIADRLFNLPSTED 60
           E Q+Q++VDLGNL+AF+  H FPS P  SRE+L ++CL +GT LVQAIAD LF LPS ED
Sbjct: 4   EKQHQFDVDLGNLMAFDSYHTFPSQPPLSREDLTRQCLLKGTHLVQAIADALFTLPSIED 63

Query: 61  VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRF 120
           VDGP+VTLPPPTTKLPR KHLPKPKPPTKWE FAKKKGI+KRKKDK+V+DEQ+GTWKRR 
Sbjct: 64  VDGPLVTLPPPTTKLPREKHLPKPKPPTKWEAFAKKKGIQKRKKDKIVYDEQSGTWKRRH 123

Query: 121 GYDRVDDDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
           GYDR +D+  +PIIEAK TD+P EDPFAKR+E KK R+ KQ+KNRLQNLK+AAK GALPS
Sbjct: 124 GYDRANDEDAIPIIEAKPTDDPEEDPFAKRKENKKNRIEKQEKNRLQNLKEAAKFGALPS 183

Query: 181 HVQLAATALPITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHR 240
           H+QLAATALPITGTQAAPKK TK ELG+VAGIAAT+TASGGKFDKK+ GEK  KH+GK+R
Sbjct: 184 HIQLAATALPITGTQAAPKKVTKDELGNVAGIAATATASGGKFDKKLAGEKPQKHEGKYR 243

Query: 241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKNV 300
           KFLPVVEG+GIGS E+EQT+K+LNK+ SK+SH ILNVEKAVT +NVK+EKK+R +  K +
Sbjct: 244 KFLPVVEGTGIGSLEREQTEKILNKIISKNSHNILNVEKAVTMHNVKKEKKRRSEKGKAL 303

Query: 301 EDKSLSTSNKLKPKKQLNKKSAKKGSSKKGKAK 333
              + +T  KLK      KKS KKG SKKGKAK
Sbjct: 304 ---ASATDKKLK----TQKKSFKKGDSKKGKAK 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2065553	318	AT2G37990 [Arabidopsis thalian	0.909	0.952	0.636	1.2e-99
ZFIN|ZDB-GENE-030131-9345	346	rrs1 "RRS1 ribosome biogenesis	0.726	0.699	0.381	2.2e-34
MGI|MGI:1929721	365	Rrs1 "RRS1 ribosome biogenesis	0.726	0.663	0.362	6.7e-33
UNIPROTKB|F1RTZ0	372	RRS1 "Uncharacterized protein"	0.726	0.650	0.370	8.5e-33
RGD|1311403	365	Rrs1 "RRS1 ribosome biogenesis	0.726	0.663	0.362	1.8e-32
UNIPROTKB|F1PRD1	365	RRS1 "Uncharacterized protein"	0.732	0.668	0.373	3.7e-32
UNIPROTKB|Q15050	365	RRS1 "Ribosome biogenesis regu	0.732	0.668	0.365	4.7e-32
UNIPROTKB|F1MPT7	365	RRS1 "Ribosome biogenesis regu	0.714	0.652	0.363	6e-32
UNIPROTKB|Q2KIH4	365	RRS1 "Ribosome biogenesis regu	0.714	0.652	0.363	6e-32
DICTYBASE|DDB_G0274521	317	rrs1 "ribosome biogenesis regu	0.816	0.858	0.304	7.1e-29

TAIR|locus:2065553 AT2G37990 [Arabidopsis thaliana (taxid:3702)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 196/308 (63%), Positives = 225/308 (73%)

Query:     1 MESQNQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
             ME++  Y+VD+GNLLAFN +H FPS PSSR ELVKE L EGTKLVQ IA++LFN PSTE 
Sbjct:     5 METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query:    61 VDGPIVTLPPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRRF 120
              DGPIV LPPPTTKLPR KH+P+PKPPTKWE FA            VVWDEQT  +KRR 
Sbjct:    65 NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query:   121 GYXXXXXXXXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPS 180
             GY         PIIEAK +DEPG DPFAKR ++KKKRV KQ+KNRLQNLK A K GALPS
Sbjct:   125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query:   181 HVQLAATALPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEKAPKHQGKHR 240
             HVQLAAT+LPI+GT+A PKK  K ELGDV            KFDKK+PGEK PK QGKH 
Sbjct:   185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query:   241 KFLPVVEGSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQ-----RLK 295
             K+LPVV G G  + EKEQT+ VL+K+FSKHSHEILNV KA+  YNVK+EKK+     +LK
Sbjct:   245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKSGRSDKLK 304

Query:   296 HNKNVEDK 303
               K++  K
Sbjct:   305 PKKDITKK 312

GO:0005634 "nucleus" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

ZFIN|ZDB-GENE-030131-9345 rrs1 "RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 101/265 (38%), Positives = 134/265 (50%)

Query:     8 EVDLGNLLAF--NHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPI 65
             E D G LLAF  N         + RE+ ++    + T+L   + + ++ LP TE VD  I
Sbjct:    33 EFDPGLLLAFDKNRLDTRDFKGNKREDCLRSLARDNTQL---LINEIWKLP-TERVDEVI 88

Query:    66 VT-LPPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRRFGYXX 124
             V  LP PTTKLPR K  PKPKPPTKWE FA            +VWDE    WKRR+GY  
Sbjct:    89 VAKLPEPTTKLPREKPAPKPKPPTKWEQFAKLKGIQKKKKTNLVWDEVHKEWKRRWGYKR 148

Query:   125 XXXXXXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQL 184
                     +IE   T +P ED FAKR + KK+RVA+ + NRL+N+ +A KV       ++
Sbjct:   149 AKDDTKEWLIEVPATADPNEDQFAKRNKAKKERVARNEYNRLKNIARAQKV-------KV 201

Query:   185 AATALPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEKAPKHQGKHRKFLP 244
               T L  T  Q      TK EL               KF +K+P EK  ++ GK RKF P
Sbjct:   202 PGTGLLPTSQQ------TKAELAQAVSLAKISTASVGKFQEKLPKEKPARNTGKKRKFQP 255

Query:   245 VVEGSGIGSREKEQTDKVLNKLFSK 269
             ++   G  S EK++   +L  + SK
Sbjct:   256 LI---GDFSSEKQKQLDLLKVMDSK 277

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1929721 Rrs1 "RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 98/270 (36%), Positives = 144/270 (53%)

Query:     6 QYEVDLGNLLAFNHSHHFPSL-----PSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
             + E DLGNLLA + +   P++     PS   EL +    + T+L   + ++L+ LP TE 
Sbjct:    31 ELEFDLGNLLASDRNP--PTVLRQAGPSPEAEL-RALARDNTQL---LINQLWRLP-TER 83

Query:    61 VDGPIVT-LPPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRR 119
             V+  +V  LP P T+LPR K LP+P+P T+W+ FA            +VWDE +G W+RR
Sbjct:    84 VEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRR 143

Query:   120 FGYXXXXXXXXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALP 179
             +GY          +IE   + +P ED FAKR + KK+RVAK + NRL+NL +A K+  +P
Sbjct:   144 WGYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM-QMP 202

Query:   180 SHVQLAATALPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEKAPKHQGKH 239
             S     +  L  TG Q+      K ELG              +F +++P EKAP+  GK 
Sbjct:   203 S-----SAGLHPTGHQS------KEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKK 251

Query:   240 RKFLPVVEGSGIGSREKEQTDKVLNKLFSK 269
             RKF P+    G  + EK+   ++L  + SK
Sbjct:   252 RKFQPLF---GDFAAEKKNQLELLRVMNSK 278

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0007080 "mitotic metaphase plate congression" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1RTZ0 RRS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 100/270 (37%), Positives = 144/270 (53%)

Query:     6 QYEVDLGNLLAFNHS-----HHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
             + E DLGNLLA + +      H  + P+   EL +    + T+L   + ++L+ LP TE 
Sbjct:    38 ELEFDLGNLLASDRNPPTGLRH--AGPTKEAEL-RALARDNTQL---LINQLWQLP-TER 90

Query:    61 VDGPIVT-LPPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRR 119
             V+  +V  LP PTT+LPR K +P+P+P T+W+ FA            +VWDE +G W+RR
Sbjct:    91 VEETLVARLPEPTTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRR 150

Query:   120 FGYXXXXXXXXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALP 179
             +GY          +IE     +P ED FAKR + KK+RVAK + NRL+NL +A K+  LP
Sbjct:   151 WGYQRARDDTKEWLIEVPSNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLP 209

Query:   180 SHVQLAATALPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEKAPKHQGKH 239
             S    AA   P TG Q+      K ELG              +F +++P EKAP+  GK 
Sbjct:   210 S----AAGMHP-TGHQS------KEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKK 258

Query:   240 RKFLPVVEGSGIGSREKEQTDKVLNKLFSK 269
             RKF P+    G  + EK+   ++L  + SK
Sbjct:   259 RKFQPLF---GDFAAEKKSQLEMLRVMNSK 285

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1311403 Rrs1 "RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 98/270 (36%), Positives = 143/270 (52%)

Query:     6 QYEVDLGNLLAFNHSHHFPSL-----PSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
             + E DLGNLLA + +   P++     PS   EL +    + T+L   + ++L+ LP TE 
Sbjct:    31 ELEFDLGNLLASDRNP--PTVLRQAGPSPEAEL-RALARDNTQL---LVNQLWQLP-TER 83

Query:    61 VDGPIVT-LPPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRR 119
             V+  +V  LP P T+LPR K LP+P+P T+W+ FA            +VWDE +G W+RR
Sbjct:    84 VEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRR 143

Query:   120 FGYXXXXXXXXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALP 179
             +GY          +IE   + +P ED FAKR   KK+RVAK + NRL+NL +A K+  +P
Sbjct:   144 WGYKRARDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM-QMP 202

Query:   180 SHVQLAATALPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEKAPKHQGKH 239
             S     +  L  TG Q+      K ELG              +F +++P EKAP+  GK 
Sbjct:   203 S-----SAGLHPTGHQS------KEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKK 251

Query:   240 RKFLPVVEGSGIGSREKEQTDKVLNKLFSK 269
             RKF P+    G  + EK+   ++L  + SK
Sbjct:   252 RKFQPLF---GDFAAEKKNQLELLRVMNSK 278

GO:0000794 "condensed nuclear chromosome" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0007080 "mitotic metaphase plate congression" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1PRD1 RRS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 100/268 (37%), Positives = 143/268 (53%)

Query:     6 QYEVDLGNLLAFNHSHHFP---SLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVD 62
             + E DLGNLLA + +       + PS   EL +    + T+L   + ++L+ LP TE V+
Sbjct:    31 ELEFDLGNLLASDPNPPAGLRRAGPSPEAEL-QALARDNTQL---LINQLWQLP-TERVE 85

Query:    63 GPIVT-LPPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRRFG 121
               +V  LP PTT+LPR K +P+P+P T+W+ FA            +VWDE +G W+RR+G
Sbjct:    86 EALVARLPEPTTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWG 145

Query:   122 YXXXXXXXXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSH 181
             Y          +IE     +P ED FAKR + KK+RVAK + NRL+NL +A K+  LPS 
Sbjct:   146 YQRARDDTKEWLIEVPGGADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS- 203

Query:   182 VQLAATALPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEKAPKHQGKHRK 241
                AA   P TG Q+      K ELG              +F +++P EKAP+  GK RK
Sbjct:   204 ---AAGMHP-TGHQS------KEELGRAMQVAKVSTASVGRFQERLPKEKAPRSSGKKRK 253

Query:   242 FLPVVEGSGIGSREKEQTDKVLNKLFSK 269
             F P+    G  + EK+   ++L  + SK
Sbjct:   254 FQPLF---GDFAAEKKSQLEMLRVMNSK 278

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q15050 RRS1 "Ribosome biogenesis regulatory protein homolog" [Homo sapiens (taxid:9606)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 98/268 (36%), Positives = 141/268 (52%)

Query:     6 QYEVDLGNLLAFNHSHHFP---SLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVD 62
             + + DLGNLLA + +       + P+   EL +    + T+L   + ++L+ LP TE V+
Sbjct:    31 ELQFDLGNLLASDRNPPTGLRCAGPTPEAEL-QALARDNTQL---LINQLWQLP-TERVE 85

Query:    63 GPIVT-LPPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRRFG 121
               IV  LP PTT+LPR K LP+P+P T+W+ FA            +VWDE +G W+RR+G
Sbjct:    86 EAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWG 145

Query:   122 YXXXXXXXXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSH 181
             Y          +IE     +P ED FAKR + KK+RVAK + NRL+NL +A K+  LPS 
Sbjct:   146 YQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS- 203

Query:   182 VQLAATALPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEKAPKHQGKHRK 241
                 A  L  TG Q+      K ELG              +F +++P EK P+  GK RK
Sbjct:   204 ----AAGLHPTGHQS------KEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRK 253

Query:   242 FLPVVEGSGIGSREKEQTDKVLNKLFSK 269
             F P+    G  + EK+   ++L  + SK
Sbjct:   254 FQPLF---GDFAAEKKNQLELLRVMNSK 278

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007080 "mitotic metaphase plate congression" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1MPT7 RRS1 "Ribosome biogenesis regulatory protein homolog" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 97/267 (36%), Positives = 141/267 (52%)

Query:     6 QYEVDLGNLLAFNHS-----HHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
             + E DLGNLLA + +      H  + P+   EL +    + T+L   + ++L+ LP TE 
Sbjct:    31 ELEFDLGNLLASDRNPPTGLRH--AGPTQEAEL-RALARDNTQL---LINQLWQLP-TER 83

Query:    61 VDGPIVT-LPPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRR 119
             V+  +V  LP P+T+LPR K +P+P+P T+W+ FA            +VWDE +G W+RR
Sbjct:    84 VEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRR 143

Query:   120 FGYXXXXXXXXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALP 179
             +GY          +IE     +P ED FAKR + KK+RVAK + NRL+NL +A K+  LP
Sbjct:   144 WGYQRARDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLP 202

Query:   180 SHVQLAATALPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEKAPKHQGKH 239
             S    AA   P TG Q+      K ELG              +F +++P EKAP+  GK 
Sbjct:   203 S----AAGMHP-TGHQS------KEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKK 251

Query:   240 RKFLPVVEGSGIGSREKEQTD--KVLN 264
             RKF P+       +  K Q +  +V+N
Sbjct:   252 RKFQPLF--GDFAAERKSQLEMLRVMN 276

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q2KIH4 RRS1 "Ribosome biogenesis regulatory protein homolog" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 97/267 (36%), Positives = 141/267 (52%)

Query:     6 QYEVDLGNLLAFNHS-----HHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTED 60
             + E DLGNLLA + +      H  + P+   EL +    + T+L   + ++L+ LP TE 
Sbjct:    31 ELEFDLGNLLASDRNPPTGLRH--AGPTQEAEL-RALARDNTQL---LINQLWQLP-TER 83

Query:    61 VDGPIVT-LPPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRR 119
             V+  +V  LP P+T+LPR K +P+P+P T+W+ FA            +VWDE +G W+RR
Sbjct:    84 VEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRR 143

Query:   120 FGYXXXXXXXXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALP 179
             +GY          +IE     +P ED FAKR + KK+RVAK + NRL+NL +A K+  LP
Sbjct:   144 WGYQRARDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLP 202

Query:   180 SHVQLAATALPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEKAPKHQGKH 239
             S    AA   P TG Q+      K ELG              +F +++P EKAP+  GK 
Sbjct:   203 S----AAGMHP-TGHQS------KEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKK 251

Query:   240 RKFLPVVEGSGIGSREKEQTD--KVLN 264
             RKF P+       +  K Q +  +V+N
Sbjct:   252 RKFQPLF--GDFAAERKSQLEMLRVMN 276

GO:0005730 "nucleolus" evidence=ISS

GO:0007080 "mitotic metaphase plate congression" evidence=ISS

GO:0000794 "condensed nuclear chromosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

DICTYBASE|DDB_G0274521 rrs1 "ribosome biogenesis regulatory protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 89/292 (30%), Positives = 143/292 (48%)

Query:    10 DLGNLLAFNHSH-HFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTL 68
             DLGNL AF+HS  +     S+  E + +   +    VQ +  RLF LP  E  +G +  L
Sbjct:    30 DLGNLTAFDHSSLNKTEYKSNPNEYINKLSRDN---VQLLISRLFQLPIKEIEEGSLALL 86

Query:    69 PPPTTKLPRSKHLPKPKPPTKWELFAXXXXXXXXXXXXVVWDEQTGTWKRRFGYXXXXXX 128
             P  TT +PR + LP  KP T+WE FA            + WD++   ++  FGY      
Sbjct:    87 PRCTTPIPRERSLPTSKPKTRWEAFAEIKGIKKKKKSSMEWDKEHEEYRPTFGYKKANDV 146

Query:   129 XXXPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAATA 188
                  + A+  D+ GEDPF K ++EK  RV+KQ K   +N  +A       S  Q++   
Sbjct:   147 ANDWAMLARPDDKVGEDPFKKLEDEKNDRVSKQKKREQRNFDEA-------SMRQMSNVG 199

Query:   189 LPITGTQAAPKKFTKHELGDVXXXXXXXXXXXXKFDKKVPGEK-APKHQGKHRKFLPVVE 247
               ++  +    +  K ++  V            KFDK+V  EK APK +GK +K   +  
Sbjct:   200 KTLSFDKEHRGQI-KSDMEKVFDVAKLSTASLGKFDKRVENEKDAPK-RGK-KKLAGL-- 254

Query:   248 GSGIGSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNVKREKKQRLKHNKN 299
             G+G  ++E E   K+++++F K +  +LNV+KA   + VK E+++     ++
Sbjct:   255 GAGDVAQESENNSKLIDRMFKKEN--VLNVDKATRQF-VKAEERENYSKKRS 303

GO:0042254 "ribosome biogenesis" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0030687 "preribosome, large subunit precursor" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SH88	RRS1_ARATH	No assigned EC number	0.7076	0.9399	0.9842	yes	no
Q869Q2	RRS1_DICDI	No assigned EC number	0.3468	0.8138	0.8548	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
pfam04939	164	pfam04939, RRS1, Ribosome biogenesis regulatory pr	2e-63
COG5225	172	COG5225, RRS1, Uncharacterized protein involved in	3e-18

>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1)

 Score =  197 bits (504), Expect = 2e-63
 Identities = 90/165 (54%), Positives = 112/165 (67%), Gaps = 4/165 (2%)

Query: 7   YEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIV 66
           YE DLGNLLAF+ +    S  + REE +K    +    VQ + ++L +LP+    DG +V
Sbjct: 3   YEFDLGNLLAFDPNPLDLSDGTDREEDLKSLARDN---VQLLINQLLSLPTERTTDGVLV 59

Query: 67  TLPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVD 126
            LP PTT+LPR K LPKPKPPTKWE FAKKKGIKKRKK K+V+DE TG W  R+GY R +
Sbjct: 60  QLPEPTTRLPREKPLPKPKPPTKWEKFAKKKGIKKRKKSKLVYDEATGEWVPRWGYKRAN 119

Query: 127 -DDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLK 170
            D     IIE K  D+P EDPFAK++ EKK+RVAK +K  L+N K
Sbjct: 120 KDLEKDWIIEVKPNDDPKEDPFAKKRREKKERVAKNEKRELKNKK 164

This family consists of several eukaryotic ribosome biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear protein that is essential for the maturation of 25 S rRNA and the 60 S ribosomal subunit assembly in Saccharomyces cerevisiae. Length = 164

>gnl|CDD|227550 COG5225, RRS1, Uncharacterized protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 80.5 bits (198), Expect = 3e-18
 Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 9/166 (5%)

Query: 9   VDLGNLLAFNHSHHFPS-LPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVT 67
           VDLGN+ AF+ +    + L SS+EE   + L+     VQ + ++L +LP+    D  ++ 
Sbjct: 13  VDLGNVAAFDLNVLDKNDLDSSQEESNIKSLKR--DNVQELKNQLCSLPARRTSDLVLLQ 70

Query: 68  LPPPTTKLPRSKHLPKPKPPTKWELFAKKKGIKKRKKD-KVVWDEQTGTWKRRFGYDRVD 126
           LP  TT LPR K LPK K  TKWE FA+ KGI+ +K+   +V+DE +G W  ++GY   +
Sbjct: 71  LPESTTALPREKPLPKEKIETKWERFARTKGIEPKKRSGPLVYDEASGEWVPKWGYKGKN 130

Query: 127 DDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQA 172
                  +  +   E         + ++K  + K + NR  N+ + 
Sbjct: 131 KR-----LLKQWLVEGEVKLKTLLRRQRKNNIKKNEANRRGNISRR 171

Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
PF04939	164	RRS1: Ribosome biogenesis regulatory protein (RRS1	100.0
KOG1765	181	consensus Regulator of ribosome synthesis [Transla	100.0
COG5225	172	RRS1 Uncharacterized protein involved in ribosome	100.0

>PF04939 RRS1: Ribosome biogenesis regulatory protein (RRS1); InterPro: IPR007023 This is a family of eukaryotic ribosomal biogenesis regulatory proteins

Probab=100.00  E-value=3.9e-68  Score=471.24  Aligned_cols=162  Identities=56%  Similarity=0.927  Sum_probs=156.1

Q ss_pred             CCccccccceecccCCCCCCCCCCChHHHHHHHHHhchhhHHHHHHHHhcCCccccCCCceEecCCCCCCCCCCCCCCCC
Q 019971            5 NQYEVDLGNLLAFNHSHHFPSLPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSKHLPKP   84 (333)
Q Consensus         5 ~~le~DLGnLla~D~n~~~~~~~~~~e~~l~~~~rd~~~n~QlLiN~l~~LP~~~~~dg~~a~LP~p~t~LPReKplPkp   84 (333)
                      |||+||||||||||+|||+....++.|+||.++||||   ||+|||+||+||++++++|+||.||+|+|.||||||||+|
T Consensus         1 t~~~~Dlg~Lla~D~~p~d~~~~~~~e~~L~~~ardn---~Q~Lin~l~~Lp~~~~~~g~~~~LP~p~t~LPReKplPk~   77 (164)
T PF04939_consen    1 TPLEFDLGNLLAFDPNPLDPSSSSDREEYLKSLARDN---TQLLINQLFELPTERTEDGVLAKLPEPTTRLPREKPLPKP   77 (164)
T ss_pred             CCceeeccceeeecCCcccccccCCcHHHHHHHHHHH---HHHHHHHHHhCCceecCCCeEEECCCCCccCcccCCCCCC
Confidence            6899999999999999997655568999999999988   7999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHhCCccccCCCceeecccCcccccccccCCC-CCCCcceeeccCCCCCCCChhHHHHHHHHHHHHHHHH
Q 019971           85 KPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVD-DDRDVPIIEAKMTDEPGEDPFAKRQEEKKKRVAKQDK  163 (333)
Q Consensus        85 Kp~TkWE~FA~~KGI~kkKk~k~v~DE~~~eWvprwGyk~~n-~~~~~wiiEvk~~~d~~eDpf~k~~~ekkerv~Kne~  163 (333)
                      +|+||||+||+.|||+|+||++|||||++++|||||||+++| +.+++|||||++++++++|||+++++||+|||+|||+
T Consensus        78 K~~TkWE~FA~~KGI~K~Kk~~lv~DE~~~eW~prwGyk~~nkd~~~~wiiEv~~~~~~~eDpf~~~~~eKkerv~Kne~  157 (164)
T PF04939_consen   78 KPPTKWEKFAKKKGIKKRKKSKLVYDEETGEWVPRWGYKRANKDKEKDWIIEVKPNDDPGEDPFEKKREEKKERVAKNEK  157 (164)
T ss_pred             CCCChHHHHHHHcCCccccCcCccccccccchhhcccccccccccccCceEEcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999 5678999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 019971          164 NRLQNL  169 (333)
Q Consensus       164 ~~lrN~  169 (333)
                      |||+|+
T Consensus       158 ~~lrN~  163 (164)
T PF04939_consen  158 QRLRNI  163 (164)
T ss_pred             HHHhcC
Confidence            999997

; GO: 0042254 ribosome biogenesis, 0005634 nucleus

>KOG1765 consensus Regulator of ribosome synthesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-64  Score=446.17  Aligned_cols=171  Identities=49%  Similarity=0.799  Sum_probs=161.3

Q ss_pred             CCCCCCccccccceecccCCCCCCC-CCCC---hHHHHHHHHHhchhhHHHHHHHHhcCCccccCCCceEecCCCCCCCC
Q 019971            1 MESQNQYEVDLGNLLAFNHSHHFPS-LPSS---REELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLP   76 (333)
Q Consensus         1 ~~~~~~le~DLGnLla~D~n~~~~~-~~~~---~e~~l~~~~rd~~~n~QlLiN~l~~LP~~~~~dg~~a~LP~p~t~LP   76 (333)
                      |+++.+|+||||||+|||+||++.. ..++   ++..|.+++||+   ||+|||+||+||++++++|+|++||+|||.||
T Consensus         5 vek~i~~~~DlGNllafd~n~l~~~~~~ss~a~~~~~l~~~~rdn---vQ~lvN~l~~lp~~rt~e~vv~qLPe~Tt~LP   81 (181)
T KOG1765|consen    5 VEKEIPLQFDLGNLLAFDRNPLDLLTLVSSGAEREKELNSLTRDN---VQLLVNKLWSLPSKRTEEGVVVQLPEPTTRLP   81 (181)
T ss_pred             ccccccceeecchhhhccCCcCccccccCCchhhhHHHHHHHHHH---HHHHHHHHHhCcccccccceeEeCCCccccCc
Confidence            6899999999999999999998654 3344   677777777765   89999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHhCCccccCCCceeecccCcccccccccCCCCCCC-cceeeccCCCCCCCChhHHHHHHHH
Q 019971           77 RSKHLPKPKPPTKWELFAKKKGIKKRKKDKVVWDEQTGTWKRRFGYDRVDDDRD-VPIIEAKMTDEPGEDPFAKRQEEKK  155 (333)
Q Consensus        77 ReKplPkpKp~TkWE~FA~~KGI~kkKk~k~v~DE~~~eWvprwGyk~~n~~~~-~wiiEvk~~~d~~eDpf~k~~~ekk  155 (333)
                      ||||||+|+|+|+||+||..|||.+|||+++||||++|||+|||||+|+||+.+ +||||+++++++++|||+.++++++
T Consensus        82 ReK~lPr~k~~TkWe~FAr~KGI~krKk~~lV~DEasgew~pr~GY~~~ndd~~~~wLvEi~dk~~~~~D~fa~~r~~kK  161 (181)
T KOG1765|consen   82 REKPLPRPKPETKWERFARKKGIEKRKKEKLVYDEASGEWKPRWGYKRKNDDLDKQWLVEIPDKEKTLVDPFALRRRQKK  161 (181)
T ss_pred             cccCCCCCCCccHHHHHHHHcCcchhhccCcceeccccccccccCccccccchhhhhhhccCCcccccccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999976 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 019971          156 KRVAKQDKNRLQNLKQAAK  174 (333)
Q Consensus       156 erv~Kne~~~lrN~~ra~k  174 (333)
                      +||+|||+|||+||+||.+
T Consensus       162 ~rv~Kne~nRl~Nl~ra~k  180 (181)
T KOG1765|consen  162 NRVKKNEKNRLRNLKRARK  180 (181)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999976

>COG5225 RRS1 Uncharacterized protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-46  Score=325.83  Aligned_cols=162  Identities=32%  Similarity=0.513  Sum_probs=144.2

Q ss_pred             CCCCCccccccceecccCCCCCCC--CCCChHHHHHHHHHhchhhHHHHHHHHhcCCccccCCCceEecCCCCCCCCCCC
Q 019971            2 ESQNQYEVDLGNLLAFNHSHHFPS--LPSSREELVKECLEEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSK   79 (333)
Q Consensus         2 ~~~~~le~DLGnLla~D~n~~~~~--~~~~~e~~l~~~~rd~~~n~QlLiN~l~~LP~~~~~dg~~a~LP~p~t~LPReK   79 (333)
                      +...|+.|||||+.|||.|+++..  ..|..|+.+.++.||+   ||.|+|+|+.||..++.|++|.+||++||.|||||
T Consensus         6 e~~ip~v~dlGn~aafD~n~ld~~~l~~s~~es~i~sL~rdn---VQ~l~nql~slp~~rtsd~VllqLPe~tt~lPR~k   82 (172)
T COG5225           6 ELKIPTVVDLGNVAAFDLNVLDKNDLDSSQEESNIKSLKRDN---VQELKNQLCSLPARRTSDLVLLQLPESTTALPREK   82 (172)
T ss_pred             ccCcceEeeccchhhcccccccccccchhhhhHHHHhhhHHH---HHHHHHHHhcCchhcccceeEEeCCCccccCcccc
Confidence            456789999999999999999643  2234667888888876   99999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccCC-CceeecccCcccccccccCCCCC-CCcceeeccCCCCCCCChhHHHHHHHHHH
Q 019971           80 HLPKPKPPTKWELFAKKKGIKKRKKD-KVVWDEQTGTWKRRFGYDRVDDD-RDVPIIEAKMTDEPGEDPFAKRQEEKKKR  157 (333)
Q Consensus        80 plPkpKp~TkWE~FA~~KGI~kkKk~-k~v~DE~~~eWvprwGyk~~n~~-~~~wiiEvk~~~d~~eDpf~k~~~ekker  157 (333)
                      |+|++++.|+||.||+.|||.+++|+ .|||||++|||||+|||+++|+. .++||+|+....      -+..+++++..
T Consensus        83 plpk~k~eTkWerFAr~KGI~pkkr~g~lvyDEasGEwvPkwGykgknk~l~~qwlve~~~k~------k~l~r~qrkn~  156 (172)
T COG5225          83 PLPKEKIETKWERFARTKGIEPKKRSGPLVYDEASGEWVPKWGYKGKNKRLLKQWLVEGEVKL------KTLLRRQRKNN  156 (172)
T ss_pred             cccccchHHHHHHHHHhcCCCccccCCCceeeccccccccccCccccchHHHHHHHHhhhHHH------HHHHHHHHHHH
Confidence            99999999999999999999999997 99999999999999999999986 679999973221      14678889999


Q ss_pred             HHHHHHHHHHHHHHH
Q 019971          158 VAKQDKNRLQNLKQA  172 (333)
Q Consensus       158 v~Kne~~~lrN~~ra  172 (333)
                      +.|||.+|++||.++
T Consensus       157 ikKne~~rr~n~~~~  171 (172)
T COG5225         157 IKKNEANRRGNISRR  171 (172)
T ss_pred             HHHHHHHHhcchhhc
Confidence            999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 58/385 (15%), Positives = 105/385 (27%), Gaps = 105/385 (27%)

Query: 6   QYEVDLGNLLAFNHSHHFPSLPSSREELV---KECLEE-------------GT------- 42
            Y      L  +N +  F     SR +     ++ L E             G+       
Sbjct: 111 MYIEQRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 43  ------KLVQAIADRLF-----NLPSTEDVDGPIVTL----PPPTTKLPRSKHLPKPKPP 87
                 K+   +  ++F     N  S E V   +  L     P  T   RS H    K  
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT--SRSDHSSNIKLR 226

Query: 88  TKWELFAKKKGIKKRKKDKV------VWDEQTGTWKRRFGY---------DRVDDDRDVP 132
                   ++ +K +  +        V + +   W   F            +   D    
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWN-AFNLSCKILLTTRFKQVTDFLSA 283

Query: 133 IIEAKMTDEPGEDPFAKRQEEKKKRVAKQDKNRLQNLKQAAKVGALPSHVQLAATAL--- 189
                ++ +          +E K  + K    R Q+L +       P  + + A ++   
Sbjct: 284 ATTTHISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDG 340

Query: 190 PITGTQAAPKKFTKHELGDVAGIAATSTASGGKFDKKVPGEKAPKHQGKHRKF--LPVVE 247
             T          KH   D       +T      +   P E    ++    +    P   
Sbjct: 341 LAT------WDNWKHVNCD-----KLTTIIESSLNVLEPAE----YRKMFDRLSVFP--P 383

Query: 248 GSGI---------GSREKEQTDKVLNKLFSKHSHEILNVEKAVTAYNV------KREKKQ 292
            + I             K     V+NKL      E    E  ++  ++      K E + 
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 293 RLKHNKNVE----DKSLSTSNKLKP 313
            L H   V+     K+  + + + P
Sbjct: 444 AL-HRSIVDHYNIPKTFDSDDLIPP 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00