Citrus Sinensis ID: 019975

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF
cHHHHHHHHccccccccccccHHHHHHccccccccccccEEEEcEEccccccHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccEEEcccccccccccccccccEEEEEEEcccHHHHHHHcccccccccccccEEEEEEEEEcccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEcccccccccccccEEEEEEEccccHHHHHHHHHccccccccc
cHHHHHHHHHcccccccccccHHHHHHccccccccccccEEEEEEEHcccccHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHcccccHHHHHHcccccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHcccHHHccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEccccccccEEEEEEccccccccccccEEEEEEEccccHHHHHHHHHHcccccccc
mqragqslmqgpkdlplihsynSIQALNKDISKSEREHDLVIASYVlgevpslqdRITIVRQLWDLTRDVLVlvepgtpqgssiISQMRSHILWMEKRKSRKyearkskdtnketskdlvtlrsgvhivapcphegrcplensgkychFVQRLQRTTSqraykrskseplrgfedekfSFVAfrrgerprerwpldgmkfdtlkeqhakrnpedleIDYEDLLRLQAeaevepckkedlvnyesdevqddtvdsdkdqekgeeetipadlgggwgriifspvrrgRQVAMDVCRSIkrdgsegsfQHLVftrsknptlhrlakkslwgdlwpf
mqragqslmqgpkdlpLIHSYNSIQALNKDISKSEREHDLVIASyvlgevpslqdRITIVRQLWDLTRDVLVLVepgtpqgssiisqmrshilwmekrksrkyearkskdtnketskdlvtlrsgVHIVAPCPHEGRCPLENSGKYCHFVQRLqrttsqraykrskseplrgfedekfsfvafrrgerprerwpldgmkfdtlkeqhakrnpedleIDYEDLLRLQAEAevepckkedlvnyesdevqddtvdsdkdqekgeeetipadlgggwgRIIFSPVRRGRQVAMDVCRSIkrdgsegsfqhlvftrsknptlhrlakkslwgdlwpf
MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF
*****************IHSYNSIQ************HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT*****IISQMRSHILW************************LVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRL*************************SFVAF***********************************YEDLLR********************************************DLGGGWGRIIFSPVRRGRQVAMDVCRSIKRD***GSFQHLVFTRSKNPTLHRLAKKSLWGDLW**
**RAGQSLMQGPKDLPLIHSYNSIQALN*****SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILW*****************************SGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAY*********GFEDEKFSFVAFRRGERP*****************************YEDLL**************************************************WGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF
*********QGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKR******************KDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRT*************LRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYES********************TIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF
****GQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRK***********************RSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLK*****R*PEDLEIDYEDLLRL***************************************TIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF
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MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query333 2.2.26 [Sep-21-2011]
Q3U2U7461 Methyltransferase-like pr yes no 0.384 0.277 0.327 1e-10
Q9UTM2 753 Rsm22-cox11 tandem protei yes no 0.318 0.140 0.345 8e-10
Q86ZU7 753 Rsm22-cox11 tandem protei yes no 0.318 0.140 0.345 8e-10
P36056628 37S ribosomal protein S22 yes no 0.780 0.414 0.260 1e-09
Q2TBP8462 Methyltransferase-like pr yes no 0.387 0.279 0.322 3e-09
Q9H7H0456 Methyltransferase-like pr yes no 0.381 0.278 0.325 4e-09
>sp|Q3U2U7|MET17_MOUSE Methyltransferase-like protein 17, mitochondrial OS=Mus musculus GN=Mettl17 PE=2 SV=2 Back     alignment and function desciption
 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 34/162 (20%)

Query: 37  EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWME 96
           + D+V+++Y L E+PS  DRI +++ LW  T   LVLVE GT  G  ++   R+ +L   
Sbjct: 259 QFDVVVSAYALSELPSRADRIEVIQNLWRKTSHFLVLVENGTKAGHRLLMDARNLVL--- 315

Query: 97  KRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGK--YCHFVQRLQ 154
                            E  K  + LR    + APCPHE  CP  N+ K   C F Q   
Sbjct: 316 ----------------GEKEKSPLDLRPSF-VFAPCPHELPCPQLNASKSLACSFSQ--- 355

Query: 155 RTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRE--RWP 194
                 AY        +  ++E FS V   RG  P+E  RWP
Sbjct: 356 ------AYHPIPFNWNKKPKEEIFSMVILARGS-PKEANRWP 390
May be a component of the mitochondrial small ribosomal subunit.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q9UTM2|CO111_SCHPO Rsm22-cox11 tandem protein 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1101 PE=1 SV=2 Back     alignment and function description
>sp|Q86ZU7|CO112_SCHPO Rsm22-cox11 tandem protein 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cos1102 PE=1 SV=2 Back     alignment and function description
>sp|P36056|RT22_YEAST 37S ribosomal protein S22, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM22 PE=1 SV=1 Back     alignment and function description
>sp|Q2TBP8|MET17_BOVIN Methyltransferase-like protein 17, mitochondrial OS=Bos taurus GN=METTL17 PE=2 SV=1 Back     alignment and function description
>sp|Q9H7H0|MET17_HUMAN Methyltransferase-like protein 17, mitochondrial OS=Homo sapiens GN=METTL17 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
255555683 501 cytochrome C oxidase assembly protein co 0.981 0.652 0.733 1e-138
225426218 585 PREDICTED: methyltransferase-like protei 0.975 0.555 0.719 1e-136
449501769 508 PREDICTED: methyltransferase-like protei 0.981 0.643 0.716 1e-134
449452208 508 PREDICTED: methyltransferase-like protei 0.981 0.643 0.716 1e-134
356546324 527 PREDICTED: methyltransferase-like protei 0.978 0.618 0.670 1e-130
357515371 536 RSM22-like protein [Medicago truncatula] 0.969 0.602 0.696 1e-128
242035311 518 hypothetical protein SORBIDRAFT_01g03129 0.996 0.640 0.659 1e-126
357140856 525 PREDICTED: uncharacterized protein LOC10 0.984 0.624 0.664 1e-125
414867408 517 TPA: hypothetical protein ZEAMMB73_55124 0.993 0.640 0.656 1e-123
326504764 524 predicted protein [Hordeum vulgare subsp 0.978 0.622 0.661 1e-123
>gi|255555683|ref|XP_002518877.1| cytochrome C oxidase assembly protein cox11, putative [Ricinus communis] gi|223541864|gb|EEF43410.1| cytochrome C oxidase assembly protein cox11, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/334 (73%), Positives = 281/334 (84%), Gaps = 7/334 (2%)

Query: 1   MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIV 60
           MQRAG+SL+Q  KDLPLIH YNSIQAL+K ISKSEREHDLVIASYVLGE+PSL+DRITIV
Sbjct: 174 MQRAGRSLIQDLKDLPLIHGYNSIQALSKTISKSEREHDLVIASYVLGEIPSLKDRITIV 233

Query: 61  RQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLV 120
           RQLWDLT DVLVLVEPGTP GS+IISQMRSHILWMEKRK RK     SK  N E  K+LV
Sbjct: 234 RQLWDLTGDVLVLVEPGTPHGSNIISQMRSHILWMEKRKHRK-----SKAQNNEACKELV 288

Query: 121 TLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSF 180
           +++SG  +VAPC H+G CPLE SGKYCHF QRLQRT+SQRAYKRSK EPLRGFEDEKFSF
Sbjct: 289 SIKSGAFVVAPCAHDGYCPLEKSGKYCHFAQRLQRTSSQRAYKRSKGEPLRGFEDEKFSF 348

Query: 181 VAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLV 240
           VAFRRG+RPR  WPLDGMKF+TLKEQ A+R  EDLEIDYED+   Q EA V P ++ D +
Sbjct: 349 VAFRRGQRPRASWPLDGMKFETLKEQRAERKLEDLEIDYEDVDE-QDEAGVVPYEEMDPL 407

Query: 241 NYESDEVQDDTVD-SDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRD 299
           +Y+SD ++ D VD +D D+++ ++ET  ADLGGGWGRIIFSPVRRGRQV++DVCRS+ RD
Sbjct: 408 DYDSDAIETDGVDNNDGDEKEEQDETGHADLGGGWGRIIFSPVRRGRQVSLDVCRSVNRD 467

Query: 300 GSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWPF 333
            SEGSF+ +V TRSKNP LH  AK+SLWGDLWPF
Sbjct: 468 SSEGSFERIVVTRSKNPALHHQAKRSLWGDLWPF 501

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225426218|ref|XP_002263667.1| PREDICTED: methyltransferase-like protein 17, mitochondrial [Vitis vinifera] gi|297742403|emb|CBI34552.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449501769|ref|XP_004161453.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452208|ref|XP_004143852.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356546324|ref|XP_003541577.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|357515371|ref|XP_003627974.1| RSM22-like protein [Medicago truncatula] gi|355521996|gb|AET02450.1| RSM22-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|242035311|ref|XP_002465050.1| hypothetical protein SORBIDRAFT_01g031290 [Sorghum bicolor] gi|241918904|gb|EER92048.1| hypothetical protein SORBIDRAFT_01g031290 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357140856|ref|XP_003571978.1| PREDICTED: uncharacterized protein LOC100843174, partial [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|414867408|tpg|DAA45965.1| TPA: hypothetical protein ZEAMMB73_551244 [Zea mays] Back     alignment and taxonomy information
>gi|326504764|dbj|BAK06673.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
TAIR|locus:2019484537 AT1G64600 [Arabidopsis thalian 0.981 0.608 0.65 4.9e-117
DICTYBASE|DDB_G0292286 1241 DDB_G0292286 [Dictyostelium di 0.315 0.084 0.346 4.3e-23
MGI|MGI:1098577461 Mettl17 "methyltransferase lik 0.189 0.136 0.421 2.1e-13
ASPGD|ASPL0000077683855 AN4613 [Emericella nidulans (t 0.624 0.243 0.297 4.7e-13
UNIPROTKB|I3L7P4345 METTL17 "Uncharacterized prote 0.189 0.182 0.421 5.7e-13
RGD|1559895461 Mettl17 "methyltransferase lik 0.183 0.132 0.403 4.5e-12
UNIPROTKB|F1PNZ8308 METTL17 "Uncharacterized prote 0.189 0.204 0.359 1.3e-11
UNIPROTKB|Q9H7H0456 METTL17 "Methyltransferase-lik 0.189 0.138 0.406 1.7e-11
UNIPROTKB|F1MEK1462 METTL17 "Methyltransferase-lik 0.189 0.136 0.406 2.9e-11
UNIPROTKB|Q2TBP8462 METTL17 "Methyltransferase-lik 0.189 0.136 0.406 2.9e-11
TAIR|locus:2019484 AT1G64600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 221/340 (65%), Positives = 269/340 (79%)

Query:     1 MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREHDLVIASYVLGEVPSLQDRITI 59
             MQRAG++L+QG KDLPLIH Y S+ ALNK+I+K SER+HDLVIASYVLGE+PSL+DRIT+
Sbjct:   173 MQRAGRNLIQGLKDLPLIHGYTSLLALNKEINKKSERKHDLVIASYVLGEIPSLKDRITV 232

Query:    60 VRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDL 119
             VRQLWDLT D+LVLVEPGTP G++IISQMRSHILWMEKRK RK E +  KD      K++
Sbjct:   233 VRQLWDLTDDLLVLVEPGTPHGANIISQMRSHILWMEKRKLRKLEKKMKKD-----GKEV 287

Query:   120 VTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFS 179
             + L+SG HIVAPCPH+G+CPLEN+GKYCHFVQRLQRT+SQR+YKR+K  PLRGFEDEKF 
Sbjct:   288 LDLKSGAHIVAPCPHDGKCPLENTGKYCHFVQRLQRTSSQRSYKRTKGVPLRGFEDEKFC 347

Query:   180 FVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQA-EAE-VEP-CKK 236
             FVAFRRG+RPRE WPLDGMK +TLKE+ A + PEDLEIDYED ++ Q  E   ++P    
Sbjct:   348 FVAFRRGQRPRELWPLDGMKLETLKERRANKKPEDLEIDYEDFIKSQVVEVPYIDPRAYD 407

Query:   237 EDLVNYESDEVQD----DTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDV 292
              D ++   +E +D    D  + DK +E+ EEE+  A +GGGWGRIIF P R+G+QV +D+
Sbjct:   408 SDTMDENEEEQEDGGGTDEDEEDKIEEEIEEESERASVGGGWGRIIFPPFRKGKQVTLDM 467

Query:   293 CRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWP 332
             C   K DGSEG+F+  V T+SKNP LH  AKKS WGDLWP
Sbjct:   468 CVPTKEDGSEGAFERRVITKSKNPDLHLQAKKSFWGDLWP 507
GO:0005507 "copper ion binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006412 "translation" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
DICTYBASE|DDB_G0292286 DDB_G0292286 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1098577 Mettl17 "methyltransferase like 17" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000077683 AN4613 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|I3L7P4 METTL17 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1559895 Mettl17 "methyltransferase like 17" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PNZ8 METTL17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H7H0 METTL17 "Methyltransferase-like protein 17, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MEK1 METTL17 "Methyltransferase-like protein 17, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBP8 METTL17 "Methyltransferase-like protein 17, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006680001
SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (534 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
pfam09243275 pfam09243, Rsm22, Mitochondrial small ribosomal su 2e-23
COG5459484 COG5459, COG5459, Predicted rRNA methylase [Transl 1e-20
pfam09243275 pfam09243, Rsm22, Mitochondrial small ribosomal su 1e-07
>gnl|CDD|220152 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22 Back     alignment and domain information 
 Score = 96.8 bits (241), Expect = 2e-23
 Identities = 52/150 (34%), Positives = 67/150 (44%), Gaps = 34/150 (22%)

Query: 39  DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKR 98
           DLV  SYVL E+     R  ++  LW      LV+VEPGTP G   +         +E R
Sbjct: 105 DLVTISYVLDELTP-ASREKVIDNLWAKAAQALVIVEPGTPAGWRRV---------LEAR 154

Query: 99  KSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTS 158
           +                         G HI APCPHE  CPL   G +CHF QR+ R++ 
Sbjct: 155 ERLIAA--------------------GFHIAAPCPHELACPLVAPGDWCHFSQRVARSSL 194

Query: 159 QRAYKRSKSEPLRGFEDEKFSFVAFRRGER 188
            R   +  S P   +EDEKFS++A  R   
Sbjct: 195 HR-LAKDASVP---WEDEKFSYLAAERQPV 220

Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria. Length = 275
>gnl|CDD|227746 COG5459, COG5459, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|220152 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 333
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 100.0
COG5459484 Predicted rRNA methylase [Translation, ribosomal s 100.0
KOG2539491 consensus Mitochondrial/chloroplast ribosome small 100.0
KOG2539491 consensus Mitochondrial/chloroplast ribosome small 99.12
PLN02232160 ubiquinone biosynthesis methyltransferase 93.21
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 93.16
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 92.56
PLN02233261 ubiquinone biosynthesis methyltransferase 90.97
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 90.32
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 89.48
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 88.58
PF05401201 NodS: Nodulation protein S (NodS); InterPro: IPR00 88.12
TIGR00740239 methyltransferase, putative. A simple BLAST search 87.94
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 86.88
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 86.79
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 86.41
PF0824299 Methyltransf_12: Methyltransferase domain; InterPr 86.03
PF01739196 CheR: CheR methyltransferase, SAM binding domain; 85.91
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 85.09
PRK12335287 tellurite resistance protein TehB; Provisional 82.51
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 81.75
PRK11207197 tellurite resistance protein TehB; Provisional 81.65
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 81.42
PRK06202232 hypothetical protein; Provisional 81.13
PRK10611287 chemotaxis methyltransferase CheR; Provisional 80.12
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information 
Probab=100.00  E-value=5.8e-60  Score=448.20  Aligned_cols=205  Identities=43%  Similarity=0.761  Sum_probs=172.4

Q ss_pred             ChHHhhhhhcCCCCCCcccchhhhhhhhhhcccCCCcccEEEecccccCCCCchhHHHHHHHHHHhcCCeEEEEeCCChh
Q 019975            1 MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ   80 (333)
Q Consensus         1 m~~~~~~ll~~~~~~p~v~~~~~~~~l~~~~~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~~g~LVLVEpGtp~   80 (333)
                      |+++|+.|+++............  ....  ..+-...||||+||+|+||++ .+|.++|++||+++.++|||||||||.
T Consensus        70 ~~~l~~~l~~~~~~~~~~~~~~~--~~~~--~~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt~~  144 (274)
T PF09243_consen   70 MLELAKRLLRAGPNNRNAEWRRV--LYRD--FLPFPPDDLVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGTPA  144 (274)
T ss_pred             HHHHHHHHHhcccccccchhhhh--hhcc--cccCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCChH
Confidence            78899999998766543222111  1111  111224499999999999998 999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcccccccccchhhhhccCCcEEEccCCCCCCCcCCCCCCceeeeeccccChhHH
Q 019975           81 GSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQR  160 (333)
Q Consensus        81 Gf~~I~~AR~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvAPCpH~~~CPm~~~~~wChF~qr~~Rp~~~r  160 (333)
                      ||+.|++||++|+                             ..++||||||||++.|||....+||||+|+++|+++++
T Consensus       145 Gf~~i~~aR~~l~-----------------------------~~~~~v~APCph~~~CP~~~~~~wChf~~r~~~~~~~~  195 (274)
T PF09243_consen  145 GFRRIAEARDQLL-----------------------------EKGAHVVAPCPHDGPCPLLASEDWCHFSQRVERSPFHR  195 (274)
T ss_pred             HHHHHHHHHHHHh-----------------------------hCCCceECCCccCCCCCCCCCCCcccceeeeccchhhh
Confidence            9999999999996                             35899999999999999988779999999999999887


Q ss_pred             HhhhccCCCCCCCccceeEEEEEEeCCCCCCCCCCCCccchhhHhhhccCCCccchhhHHHHHHhhhhcccccccccccc
Q 019975          161 AYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLV  240 (333)
Q Consensus       161 ~~k~~~g~~~r~~ed~kFSYvvlrKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      ..+   +.. .++|++|||||+.+|+++.                                                   
T Consensus       196 ~~k---~~~-~~~e~ekfSYl~~~~~~~~---------------------------------------------------  220 (274)
T PF09243_consen  196 LAK---SAG-LPYEDEKFSYLAKGRGPRA---------------------------------------------------  220 (274)
T ss_pred             hcc---ccc-CCccccceeeeeecccccc---------------------------------------------------
Confidence            665   222 4789999999776665421                                                   


Q ss_pred             cccccccccCcCCCcccccccccccccccCCCCCcccccCceeeCCeEEEeeccCCcCCCCCCCeeEEEEeccCCchhhh
Q 019975          241 NYESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHR  320 (333)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRiI~pPlKR~gHV~ldvCtp~~~~~~~G~ler~~v~Ks~~kq~Y~  320 (333)
                                                     ..|||||+||+||+|||+||||||      +|+|+|+||+||+| ++||
T Consensus       221 -------------------------------~~~~Rii~~p~~~~~hv~~~~C~~------~G~l~~~~v~K~~g-~~y~  262 (274)
T PF09243_consen  221 -------------------------------PAWPRIIRPPLKRKGHVICDLCTP------DGQLERVVVTKRHG-ELYR  262 (274)
T ss_pred             -------------------------------cccchhcchhhccCCcEEEEEECC------CCCEEEEEEcccch-HHHH
Confidence                                           129999999999999999999998      99999999999888 8999


Q ss_pred             hhhhcCCCCCCC
Q 019975          321 LAKKSLWGDLWP  332 (333)
Q Consensus       321 dARKs~WGDLwp  332 (333)
                      +|||+.|||+||
T Consensus       263 ~aRk~~wGD~~p  274 (274)
T PF09243_consen  263 CARKSKWGDLWP  274 (274)
T ss_pred             HHHhccccCCCC
Confidence            999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02232 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PRK10611 chemotaxis methyltransferase CheR; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.5 bits (117), Expect = 9e-07
 Identities = 47/333 (14%), Positives = 88/333 (26%), Gaps = 102/333 (30%)

Query: 47  LGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEAR 106
           L    S +    ++  L  L    L  ++P     S   S ++  I  ++    R  +++
Sbjct: 189 LKNCNSPET---VLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 107 KSKDT--------NKET-------SKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQ 151
             ++         N +         K L+T R                         F Q
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-------------------------FKQ 276

Query: 152 RLQRTTSQRAYKRSKSEPLRGF-EDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKR 210
                ++      S          DE  S +          ++ L   +   L  +    
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---------KY-L-DCRPQDLPREVLTT 325

Query: 211 NPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEE------ 264
           NP  L I       +           ++  +   D++    ++S  +  +  E       
Sbjct: 326 NPRRLSI-------IAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFDR 377

Query: 265 --------TIPAD-LGGGWGRIIFSPVRRGRQVAMDVCRS---IKRDGSEGSF------Q 306
                    IP   L   W  +I S V     V ++       +++   E +        
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDV----MVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 307 HLVFTRSKNPTLHR-------LAKKSLWGDLWP 332
            L         LHR       + K     DL P
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 93.35
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 92.85
3hnr_A220 Probable methyltransferase BT9727_4108; structural 92.72
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 92.3
3dtn_A234 Putative methyltransferase MM_2633; structural gen 91.65
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 91.59
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 90.68
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 89.73
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 89.57
2pxx_A215 Uncharacterized protein MGC2408; structural genomi 89.5
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 89.1
3ggd_A245 SAM-dependent methyltransferase; YP_325210.1, stru 88.95
2gs9_A211 Hypothetical protein TT1324; methyl transferase, s 88.85
3lcc_A235 Putative methyl chloride transferase; halide methy 87.5
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 87.47
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 86.99
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 86.88
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 86.38
3pfg_A263 N-methyltransferase; N,N-dimethyltransferase, SAM 86.35
3bxo_A239 N,N-dimethyltransferase; desosamine, sugar, carboh 85.63
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 85.17
2p7i_A250 Hypothetical protein; putative methyltransferase, 84.85
2ld4_A176 Anamorsin; methyltransferase-like fold, alpha/beta 84.74
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 84.54
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 84.45
3i9f_A170 Putative type 11 methyltransferase; structural gen 84.11
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 84.05
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 83.45
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 83.28
3dp7_A363 SAM-dependent methyltransferase; structural genomi 82.49
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 82.41
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 82.4
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 82.15
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 81.56
3dh0_A219 SAM dependent methyltransferase; cystal structure, 81.39
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 81.36
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 81.14
2a14_A263 Indolethylamine N-methyltransferase; SGC,INMT, str 81.02
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 80.47
1vl5_A260 Unknown conserved protein BH2331; putative methylt 80.32
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 80.27
1ej0_A180 FTSJ; methyltransferase, adoMet, adenosyl methioni 80.13
3m70_A286 Tellurite resistance protein TEHB homolog; structu 80.03
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=93.35  E-value=0.11  Score=47.42  Aligned_cols=46  Identities=15%  Similarity=0.258  Sum_probs=39.0

Q ss_pred             CcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhhh
Q 019975           36 REHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQGS   82 (333)
Q Consensus        36 ~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~Gf   82 (333)
                      ..||+|++.++|.-++ ..+|..+++++.+.+  ||.|||.|+-.+...
T Consensus       138 ~~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~  185 (261)
T 4gek_A          138 ENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSFEDA  185 (261)
T ss_dssp             CSEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSH
T ss_pred             cccccceeeeeeeecC-chhHhHHHHHHHHHcCCCcEEEEEeccCCCCH
Confidence            4699999999999886 678889999999975  999999998765543
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Back     alignment and structure
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 94.21
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 93.13
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 92.56
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 92.43
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 92.34
d1af7a2193 Chemotaxis receptor methyltransferase CheR, C-term 92.23
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 89.55
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 89.18
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 88.16
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 87.83
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 85.11
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 83.33
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 82.0
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.026  Score=49.18  Aligned_cols=51  Identities=12%  Similarity=0.126  Sum_probs=40.3

Q ss_pred             ccCCCcccEEEecccccCCCCchhHHHHHHHHHHhc--CCeEEEEeCCChhhhHHH
Q 019975           32 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT--RDVLVLVEPGTPQGSSII   85 (333)
Q Consensus        32 ~~~~~~~DLVias~~L~EL~s~~~R~~~v~~LW~~~--~g~LVLVEpGtp~Gf~~I   85 (333)
                      ..+..+||+|++.++|--++.   ...+++++++.+  +|.|+|+.+....++..+
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l  170 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL  170 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHH
T ss_pred             cCCCCceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEEecCcchHHHH
Confidence            345679999999999999874   357899999985  899999988766665433
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure